GSE42519 Processing Pipeline

GSE code_examples 1 step

Publication

The splicing factor RBM17 drives leukemic stem cell maintenance by evading nonsense-mediated decay of pro-leukemic factors.

Nature communications (2022) — PMID 35781533

Dataset

GSE42519

The Hematopoietic System - Myeloid arm

Warning: Pipeline descriptions and code snippets may be inferred or AI-generated. Use them only as a starting point to guide analysis, and validate before use.

Processing Steps

Generate Jupyter Notebook
  1. 1

    Cell intesity files (CEL files) were generated in the Genechip Command Console Software (AGCC), (Affymetrix, Santa Clara, CA, USA)

    Microarray vNot specified
    $ Bash example 
    # CEL files are generated using the Genechip Command Console Software (AGCC).
# This is typically a GUI-based process performed on the Affymetrix instrument workstation,
# not a direct command-line execution in a bioinformatics pipeline.
# The output of this step are the raw CEL intensity files.

Tools Used

Microarray
Raw Source Text 
Cell intesity files (CEL files) were generated in the Genechip Command Console Software (AGCC), (Affymetrix, Santa Clara, CA, USA)
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