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GSE71536

GSE GEO
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Biallelic mutations in the 3’ exonuclease TOE1 cause Pontocerebellar Hypoplasia Type 7 and result in snRNA processing defects

Organism: Homo sapiens
Platform: GPL15520
Samples: 154
Experiment Types:
Expression profiling by high throughput sequencing
Submitted: Jul 29 2015
Last Updated: May 15 2019
Status: Public on Dec 31 2016
Contact: Gene,,Yeo (UCSD)

Relations

BioProject: https://www.ncbi.nlm.nih.gov/bioproject/PRJNA291458 SRA: https://www.ncbi.nlm.nih.gov/sra?term=SRP061801

Summary

Processing of RNA polymerase II-transcribed spliceosomal small nuclear RNAs (snRNAs) initiates with cleavage by the Integrator complex, but the factors that subsequently remove 3’ end extensions from metazoan snRNAs have remained unknown. We studied human families with a unique recessive syndromic constellation of pontocerebellar atrophy with ambiguous genitalia, uncovering biallelic inactivating mutations in TOE1, which encodes a conserved unconventional deadenylase. TOE1 demonstrated tight association with snRNA-protein (snRNP) complexes with specificity for incompletely processed pre-snRNAs containing 3’ end extensions that often included post-transcriptionally added tails. Human cells deficient for TOE1 catalytic activity showed accumulation of 3’-end extended U1, U2, U4 and U5 pre-snRNAs, and TOE1 immuno-isolated from human cells was capable of processing 3’-end extended snRNPs in vitro. The missense mutations identified in patients impaired TOE1 stability and snRNA processing in patient cells, which was associated with defects in splicing. Our findings reveal the cause of a unique brain malformation and uncover a long-sought 3’ exonuclease required for snRNA processing.

Overall Design

We performed 154 experiments to profile snRNA tails for U1, U2, U4, and U5 snRNAs. Samples profiled include HEK 293, primary patient fibroblasts, and NPCs derived from primary patient fibroblasts, which were subjected to various treatments to study TOE1/cap1Z function (including siRNA of TOE1 compared to control siRNA, and over-expression of various TOE1 mutants compared to wild-type TOE1 and a FLAG-only control). For some indicated samples total RNA was used; for others in which FLAG-tagged TOE1 was over-expressed, profiling was performed on RNA isolated by RIP (RNA immunoprecipitation) using an anti-FLAG antibody.

Analysis (4 steps)

View Data Processing
Processing steps for GSE71536
  1. Demultiplexing: Reads were demultiplexed based on the presence of the gene-specific primer at the beginning of R2, and a random-mer was extracted off of the beginning of R1.
  2. Read trimming: Reads were trimmed at the 3' end using the cutadapt program, with options "--discard-untrimmed flag -a Gene_Specific_Primer"
  3. Tail counting: Non-PCR duplicate reads were counted by summing reads with the same sequence that did not have the same randommer sequence as any other read.
  4. Counts were performed for unique only (hamming distance > 0), as well as randommers at least 1 nt apart (hamming distance >1)

Supplementary Files (1)

GSE71536_RAW.tar Download
GEO Samples (154)
GSM1836489 GSM1836490 GSM1836491 GSM1836492 GSM1836493 GSM1836494 GSM1836495 GSM1836496 GSM1836497 GSM1836498 GSM1836499 GSM1836500 GSM1836501 GSM1836502 GSM1836503 GSM1836504 GSM1836505 GSM1836506 GSM1836507 GSM1836508 GSM1836509 GSM1836510 GSM1836511 GSM1836512 GSM1836513 GSM1836514 GSM1836515 GSM1836516 GSM1836517 GSM1836518 GSM1836519 GSM1836520 GSM1836521 GSM1836522 GSM1836523 GSM1836524 GSM1836525 GSM1836526 GSM1836527 GSM1836528 GSM1836529 GSM1836530 GSM1836531 GSM1836532 GSM1836533 GSM1836534 GSM1836535 GSM1836536 GSM1836537 GSM1836538 GSM1836539 GSM1836540 GSM1836541 GSM1836542 GSM1836543 GSM1836544 GSM1836545 GSM1836546 GSM1836547 GSM1836548 GSM1836549 GSM1836550 GSM1836551 GSM1836552 GSM1836553 GSM1836554 GSM1836555 GSM1836556 GSM1836557 GSM1836558 GSM1836559 GSM1836560 GSM1836561 GSM1836562 GSM1836563 GSM1836564 GSM1836565 GSM1836566 GSM1836567 GSM1836568 GSM1836569 GSM1836570 GSM1836571 GSM1836572 GSM1836573 GSM1836574 GSM1836575 GSM1836576 GSM1836577 GSM1836578 GSM1836579 GSM1836580 GSM1836581 GSM1836582 GSM1836583 GSM1836584 GSM1836585 GSM1836586 GSM1836587 GSM1836588 GSM1836589 GSM1836590 GSM1836591 GSM1836592 GSM1836593 GSM1836594 GSM1836595 GSM1836596 GSM1836597 GSM1836598 GSM1836599 GSM1836600 GSM1836601 GSM1836602 GSM1836603 GSM1836604 GSM1836605 GSM1836606 GSM1836607 GSM1836608 GSM1836609 GSM1836610 GSM1836611 GSM1836612 GSM1836613 GSM1836614 GSM1836615 GSM1836616 GSM1836617 GSM1836618 GSM1836619 GSM1836620 GSM1836621 GSM1836622 GSM1836623 GSM1836624 GSM1836625 GSM1836626 GSM1836627 GSM1836628 GSM1836629 GSM1836630 GSM1836631 GSM1836632 GSM1836633 GSM1836634 GSM1836635 GSM1836636 GSM1836637 GSM1836638 GSM1836639 GSM1836640 GSM1836641 GSM1836642

Dataset Citations (1)

Biallelic mutations in the 3' exonuclease TOE1 cause pontocerebellar hypoplasia and uncover a role in snRNA processing.
PMID 28092684 · 2017 · Nature genetics
Rea M Lardelli, Ashleigh E Schaffer, Veerle R C Eggens, Maha S Zaki, Stephanie Grainger, Shashank Sathe, Eric L Van Nostrand, Zinayida Schlachetzki, Basak Rosti, Naiara Akizu, Eric Scott, Jennifer L Silhavy, Laura Dean Heckman, Rasim Ozgur Rosti, Esra Dikoglu, Anne Gregor, Alicia Guemez-Gamboa, Damir Musaev, Rohit Mande, Ari Widjaja, Tim L Shaw, Sebastian Markmiller, Isaac Marin-Valencia, Justin H Davies, Linda de Meirleir, Hulya Kayserili, Umut Altunoglu, Mary Louise Freckmann, Linda Warwick, David Chitayat, Susan Blaser, Ahmet Okay Çağlayan, Kaya Bilguvar, Huseyin Per, Christina Fagerberg, Henrik T Christesen, Maria Kibaek, Kimberly A Aldinger, David Manchester, Naomichi Matsumoto, Kazuhiro Muramatsu, Hirotomo Saitsu, Masaaki Shiina, Kazuhiro Ogata, Nicola Foulds, William B Dobyns, Neil C Chi, David Traver, Luigina Spaccini, Stefania Maria Bova, Stacey B Gabriel, Murat Gunel, Enza Maria Valente, Marie-Cecile Nassogne, Eric J Bennett, Gene W Yeo, Frank Baas, Jens Lykke-Andersen, Joseph G Gleeson

SRA Experiments (154) and Runs (154)

Total: 250 MB
SRX1124428 SRP061801 RNA-Seq SINGLE
GSM1836489: Expt1_input-U1-FLAGonly-siLuc; Homo sapiens; RNA-Seq
Sample: SRS1016929
BioProject: PRJNA291458
BioSample: SAMN03944426
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: HEK 293
cell line: HEK 293
sirna: siControl
expression_construct: FLAG
target_gene: U1
experimental_condition: FLAGonly_siLuc
r1_inline_randommer: CAGCTTNNNNT
Original files (1)
HEK 293
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134474 15661 809671 0.51 Sample1_Expt1_input-U1-FLAGonly-siLuc.fastq.gz, SRR2134474, SRR213447… SRA
SRX1124429 SRP061801 RNA-Seq SINGLE
GSM1836490: Expt1_input-U1-FLAGonly-siCaf1z; Homo sapiens; RNA-Seq
Sample: SRS1016927
BioProject: PRJNA291458
BioSample: SAMN03944427
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: HEK 293
cell line: HEK 293
sirna: siTOE1
expression_construct: FLAG
target_gene: U1
experimental_condition: FLAGonly-siCaf1z
r1_inline_randommer: CAGCTTNNNNT
Original files (1)
HEK 293
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134475 17750 950354 0.59 Sample2_Expt1_input-U1-FLAGonly-siCaf1z.fastq.gz, SRR2134475, SRR2134… SRA
SRX1124430 SRP061801 RNA-Seq SINGLE
GSM1836491: Expt1_input-U1-WTaddback-siCaf1z; Homo sapiens; RNA-Seq
Sample: SRS1016928
BioProject: PRJNA291458
BioSample: SAMN03944428
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: HEK 293
cell line: HEK 293
sirna: siTOE1
expression_construct: FLAG-TOE1WT
target_gene: U1
experimental_condition: WTaddback-siCaf1z
r1_inline_randommer: CAGCTTNNNNT
Original files (1)
HEK 293
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134476 17237 916042 0.56 Sample3_Expt1_input-U1-WTaddback-siCaf1z.fastq.gz, SRR2134476, SRR213… SRA
SRX1124431 SRP061801 RNA-Seq SINGLE
GSM1836492: Expt1_input-U1-DEaddback-siCaf1z; Homo sapiens; RNA-Seq
Sample: SRS1016926
BioProject: PRJNA291458
BioSample: SAMN03944429
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: HEK 293
cell line: HEK 293
sirna: siTOE1
expression_construct: FLAG-TOE1DE
target_gene: U1
experimental_condition: DEaddback-siCaf1z
r1_inline_randommer: CAGCTTNNNNT
Original files (1)
HEK 293
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134477 16601 896488 0.56 Sample4_Expt1_input-U1-DEaddback-siCaf1z.fastq.gz, SRR2134477, SRR213… SRA
SRX1124432 SRP061801 RIP-Seq SINGLE
GSM1836493: Expt1_elu-U1-WTaddback; Homo sapiens; RIP-Seq
Sample: SRS1016924
BioProject: PRJNA291458
BioSample: SAMN03944430
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: HEK 293
cell line: HEK 293
sirna: siTOE1
expression_construct: FLAG-TOE1WT
target_gene: U1
rip antibody: Mouse anti-FLAG (Sigma)
experimental_condition: WTaddback
r1_inline_randommer: CAGCTTNNNNT
Original files (1)
HEK 293
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134478 14711 838979 0.53 Sample5_Expt1_elu-U1-WTaddback.fastq.gz, SRR2134478, SRR2134478.srali… SRA
SRX1124433 SRP061801 RIP-Seq SINGLE
GSM1836494: Expt1_elu-U1-DEaddback; Homo sapiens; RIP-Seq
Sample: SRS1016923
BioProject: PRJNA291458
BioSample: SAMN03944431
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: HEK 293
cell line: HEK 293
sirna: siTOE1
expression_construct: FLAG-TOE1DE
target_gene: U1
rip antibody: Mouse anti-FLAG (Sigma)
experimental_condition: DEaddback
r1_inline_randommer: CAGCTTNNNNT
Original files (1)
HEK 293
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134479 18627 1138657 0.7 Sample6_Expt1_elu-U1-DEaddback.fastq.gz, SRR2134479, SRR2134479.srali… SRA
SRX1124434 SRP061801 RNA-Seq SINGLE
GSM1836495: Expt1_input-U2-FLAGonly-siLuc; Homo sapiens; RNA-Seq
Sample: SRS1016925
BioProject: PRJNA291458
BioSample: SAMN03944432
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: HEK 293
cell line: HEK 293
sirna: siControl
expression_construct: FLAG
target_gene: U2
experimental_condition: FLAGonly_siLuc
r1_inline_randommer: CAGCTTNNNNT
Original files (1)
HEK 293
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134480 17760 1156742 0.73 Sample7_Expt1_input-U2-FLAGonly-siLuc.fastq.gz, SRR2134480, SRR213448… SRA
SRX1124435 SRP061801 RNA-Seq SINGLE
GSM1836496: Expt1_input-U2-FLAGonly-siCaf1z; Homo sapiens; RNA-Seq
Sample: SRS1016922
BioProject: PRJNA291458
BioSample: SAMN03944433
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: HEK 293
cell line: HEK 293
sirna: siTOE1
expression_construct: FLAG
target_gene: U2
experimental_condition: FLAGonly-siCaf1z
r1_inline_randommer: CAGCTTNNNNT
Original files (1)
HEK 293
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134481 16581 1116400 0.7 Sample8_Expt1_input-U2-FLAGonly-siCaf1z.fastq.gz, SRR2134481, SRR2134… SRA
SRX1124436 SRP061801 RNA-Seq SINGLE
GSM1836497: Expt1_input-U2-WTaddback-siCaf1z; Homo sapiens; RNA-Seq
Sample: SRS1016921
BioProject: PRJNA291458
BioSample: SAMN03944434
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: HEK 293
cell line: HEK 293
sirna: siTOE1
expression_construct: FLAG-TOE1WT
target_gene: U2
experimental_condition: WTaddback-siCaf1z
r1_inline_randommer: CAGCTTNNNNT
Original files (1)
HEK 293
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134482 16904 1096872 0.69 Sample9_Expt1_input-U2-WTaddback-siCaf1z.fastq.gz, SRR2134482, SRR213… SRA
SRX1124437 SRP061801 RNA-Seq SINGLE
GSM1836498: Expt1_input-U2-DEaddback-siCaf1z; Homo sapiens; RNA-Seq
Sample: SRS1016920
BioProject: PRJNA291458
BioSample: SAMN03944435
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: HEK 293
cell line: HEK 293
sirna: siTOE1
expression_construct: FLAG-TOE1DE
target_gene: U2
experimental_condition: DEaddback-siCaf1z
r1_inline_randommer: CAGCTTNNNNT
Original files (1)
HEK 293
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134483 19185 1296082 0.8 Sample10_Expt1_input-U2-DEaddback-siCaf1z.fastq.gz, SRR2134483, SRR21… SRA
SRX1124438 SRP061801 RIP-Seq SINGLE
GSM1836499: Expt1_elu-U2-WTaddback; Homo sapiens; RIP-Seq
Sample: SRS1016919
BioProject: PRJNA291458
BioSample: SAMN03944436
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: HEK 293
cell line: HEK 293
sirna: siTOE1
expression_construct: FLAG-TOE1WT
target_gene: U2
rip antibody: Mouse anti-FLAG (Sigma)
experimental_condition: WTaddback
r1_inline_randommer: CAGCTTNNNNT
Original files (1)
HEK 293
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134484 19795 1313886 0.83 Sample11_Expt1_elu-U2-WTaddback.fastq.gz, SRR2134484, SRR2134484.sral… SRA
SRX1124439 SRP061801 RIP-Seq SINGLE
GSM1836500: Expt1_elu-U2-Deaddback; Homo sapiens; RIP-Seq
Sample: SRS1016917
BioProject: PRJNA291458
BioSample: SAMN03944437
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: HEK 293
cell line: HEK 293
sirna: siTOE1
expression_construct: FLAG-TOE1DE
target_gene: U2
rip antibody: Mouse anti-FLAG (Sigma)
experimental_condition: DEaddback
r1_inline_randommer: CAGCTTNNNNT
Original files (1)
HEK 293
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134485 19348 1375968 0.85 Sample12_Expt1_elu-U2-Deaddback.fastq.gz, SRR2134485, SRR2134485.sral… SRA
SRX1124440 SRP061801 RNA-Seq SINGLE
GSM1836501: Expt2_input-U1-FLAGonly-siLuc; Homo sapiens; RNA-Seq
Sample: SRS1016918
BioProject: PRJNA291458
BioSample: SAMN03944438
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: HEK 293
cell line: HEK 293
sirna: siControl
expression_construct: FLAG
target_gene: U1
experimental_condition: FLAGonly_siLuc
r1_inline_randommer: NNNNNNNNNNCT
Original files (1)
HEK 293
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134486 6521 838948 0.46 Sample13_Expt2_input-U1-FLAGonly-siLuc.fastq.gz, SRR2134486, SRR21344… SRA
SRX1124441 SRP061801 RNA-Seq SINGLE
GSM1836502: Expt2_input-U1-FLAGonly-siCaf1z; Homo sapiens; RNA-Seq
Sample: SRS1016916
BioProject: PRJNA291458
BioSample: SAMN03944439
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: HEK 293
cell line: HEK 293
sirna: siTOE1
expression_construct: FLAG
target_gene: U1
experimental_condition: FLAGonly-siCaf1z
r1_inline_randommer: NNNNNNNNNNCT
Original files (1)
HEK 293
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134487 5232 673359 0.39 Sample14_Expt2_input-U1-FLAGonly-siCaf1z.fastq.gz, SRR2134487, SRR213… SRA
SRX1124442 SRP061801 RNA-Seq SINGLE
GSM1836503: Expt2_input-U1-WTaddback-siCaf1z; Homo sapiens; RNA-Seq
Sample: SRS1016915
BioProject: PRJNA291458
BioSample: SAMN03944440
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: HEK 293
cell line: HEK 293
sirna: siTOE1
expression_construct: FLAG-TOE1WT
target_gene: U1
experimental_condition: WTaddback-siCaf1z
r1_inline_randommer: NNNNNNNNNNNCT
Original files (1)
HEK 293
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134488 5764 749567 0.42 Sample15_Expt2_input-U1-WTaddback-siCaf1z.fastq.gz, SRR2134488, SRR21… SRA
SRX1124443 SRP061801 RNA-Seq SINGLE
GSM1836504: Expt2_input-U1-DEaddback-siCaf1z; Homo sapiens; RNA-Seq
Sample: SRS1016914
BioProject: PRJNA291458
BioSample: SAMN03944441
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: HEK 293
cell line: HEK 293
sirna: siTOE1
expression_construct: FLAG-TOE1DE
target_gene: U1
experimental_condition: DEaddback-siCaf1z
r1_inline_randommer: NNNNNNNNNNNCT
Original files (1)
HEK 293
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134489 6376 830116 0.46 Sample16_Expt2_input-U1-DEaddback-siCaf1z.fastq.gz, SRR2134489, SRR21… SRA
SRX1124444 SRP061801 RIP-Seq SINGLE
GSM1836505: Expt2_elu-U1-WTaddback; Homo sapiens; RIP-Seq
Sample: SRS1016913
BioProject: PRJNA291458
BioSample: SAMN03944442
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: HEK 293
cell line: HEK 293
sirna: siTOE1
expression_construct: FLAG-TOE1WT
target_gene: U1
rip antibody: Mouse anti-FLAG (Sigma)
experimental_condition: WTaddback
r1_inline_randommer: NNNNNNNNNNNCT
Original files (1)
HEK 293
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134490 3251 425902 0.28 Sample17_Expt2_elu-U1-WTaddback.fastq.gz, SRR2134490, SRR2134490.sral… SRA
SRX1124445 SRP061801 RIP-Seq SINGLE
GSM1836506: Expt2_elu-U1-DEaddback; Homo sapiens; RIP-Seq
Sample: SRS1016912
BioProject: PRJNA291458
BioSample: SAMN03944443
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: HEK 293
cell line: HEK 293
sirna: siTOE1
expression_construct: FLAG-TOE1DE
target_gene: U1
rip antibody: Mouse anti-FLAG (Sigma)
experimental_condition: DEaddback
r1_inline_randommer: NNNNNNNNNNCT
Original files (1)
HEK 293
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134491 2630 346835 0.24 Sample18_Expt2_elu-U1-DEaddback.fastq.gz, SRR2134491, SRR2134491.sral… SRA
SRX1124446 SRP061801 RNA-Seq SINGLE
GSM1836507: Expt2_input-U2-FLAGonly-siLuc; Homo sapiens; RNA-Seq
Sample: SRS1016909
BioProject: PRJNA291458
BioSample: SAMN03944444
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: HEK 293
cell line: HEK 293
sirna: siControl
expression_construct: FLAG
target_gene: U2
experimental_condition: FLAGonly_siLuc
r1_inline_randommer: NNNNNNNNNNCT
Original files (1)
HEK 293
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134492 5348 361631 0.27 Sample19_Expt2_input-U2-FLAGonly-siLuc.fastq.gz, SRR2134492, SRR21344… SRA
SRX1124447 SRP061801 RNA-Seq SINGLE
GSM1836508: Expt2_input-U2-FLAGonly-siCaf1z; Homo sapiens; RNA-Seq
Sample: SRS1016910
BioProject: PRJNA291458
BioSample: SAMN03944445
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: HEK 293
cell line: HEK 293
sirna: siTOE1
expression_construct: FLAG
target_gene: U2
experimental_condition: FLAGonly-siCaf1z
r1_inline_randommer: NNNNNNNNNNCT
Original files (1)
HEK 293
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134493 4303 298882 0.23 Sample20_Expt2_input-U2-FLAGonly-siCaf1z.fastq.gz, SRR2134493, SRR213… SRA
SRX1124448 SRP061801 RNA-Seq SINGLE
GSM1836509: Expt2_input-U2-WTaddback-siCaf1z; Homo sapiens; RNA-Seq
Sample: SRS1016776
BioProject: PRJNA291458
BioSample: SAMN03944446
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: HEK 293
cell line: HEK 293
sirna: siTOE1
expression_construct: FLAG-TOE1WT
target_gene: U2
experimental_condition: WTaddback-siCaf1z
r1_inline_randommer: NNNNNNNNNNNCT
Original files (1)
HEK 293
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134494 5095 349365 0.26 Sample21_Expt2_input-U2-WTaddback-siCaf1z.fastq.gz, SRR2134494, SRR21… SRA
SRX1124449 SRP061801 RNA-Seq SINGLE
GSM1836510: Expt2_input-U2-DEaddback-siCaf1z; Homo sapiens; RNA-Seq
Sample: SRS1016911
BioProject: PRJNA291458
BioSample: SAMN03944447
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: HEK 293
cell line: HEK 293
sirna: siTOE1
expression_construct: FLAG-TOE1DE
target_gene: U2
experimental_condition: DEaddback-siCaf1z
r1_inline_randommer: NNNNNNNNNNNCT
Original files (1)
HEK 293
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134495 5203 368027 0.27 Sample22_Expt2_input-U2-DEaddback-siCaf1z.fastq.gz, SRR2134495, SRR21… SRA
SRX1124450 SRP061801 RIP-Seq SINGLE
GSM1836511: Expt2_elu-U2-WTaddback; Homo sapiens; RIP-Seq
Sample: SRS1016907
BioProject: PRJNA291458
BioSample: SAMN03944448
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: HEK 293
cell line: HEK 293
sirna: siTOE1
expression_construct: FLAG-TOE1WT
target_gene: U2
rip antibody: Mouse anti-FLAG (Sigma)
experimental_condition: WTaddback
r1_inline_randommer: NNNNNNNNNNNCT
Original files (1)
HEK 293
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134496 4987 349880 0.26 Sample23_Expt2_elu-U2-WTaddback.fastq.gz, SRR2134496, SRR2134496.sral… SRA
SRX1124451 SRP061801 RIP-Seq SINGLE
GSM1836512: Expt2_elu-U2-DEaddback; Homo sapiens; RIP-Seq
Sample: SRS1016908
BioProject: PRJNA291458
BioSample: SAMN03944449
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: HEK 293
cell line: HEK 293
sirna: siTOE1
expression_construct: FLAG-TOE1DE
target_gene: U2
rip antibody: Mouse anti-FLAG (Sigma)
experimental_condition: DEaddback
r1_inline_randommer: NNNNNNNNNNCT
Original files (1)
HEK 293
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134497 5223 383336 0.28 Sample24_Expt2_elu-U2-DEaddback.fastq.gz, SRR2134497, SRR2134497.sral… SRA
SRX1124452 SRP061801 RNA-Seq SINGLE
GSM1836513: Expt2_input-U4-FLAGonly-siLuc; Homo sapiens; RNA-Seq
Sample: SRS1016906
BioProject: PRJNA291458
BioSample: SAMN03944450
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: HEK 293
cell line: HEK 293
sirna: siControl
expression_construct: FLAG
target_gene: U4
experimental_condition: FLAGonly_siLuc
r1_inline_randommer: NNNNNNNNNNCT
Original files (1)
HEK 293
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134498 6768 826168 0.55 Sample25_Expt2_input-U4-FLAGonly-siLuc.fastq.gz, SRR2134498, SRR21344… SRA
SRX1124453 SRP061801 RNA-Seq SINGLE
GSM1836514: Expt2_input-U4-FLAGonly-siCaf1z; Homo sapiens; RNA-Seq
Sample: SRS1016905
BioProject: PRJNA291458
BioSample: SAMN03944451
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: HEK 293
cell line: HEK 293
sirna: siTOE1
expression_construct: FLAG
target_gene: U4
experimental_condition: FLAGonly-siCaf1z
r1_inline_randommer: NNNNNNNNNNCT
Original files (1)
HEK 293
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134499 6405 782481 0.52 Sample26_Expt2_input-U4-FLAGonly-siCaf1z.fastq.gz, SRR2134499, SRR213… SRA
SRX1124454 SRP061801 RNA-Seq SINGLE
GSM1836515: Expt2_input-U4-WTaddback-siCaf1z; Homo sapiens; RNA-Seq
Sample: SRS1016904
BioProject: PRJNA291458
BioSample: SAMN03944452
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: HEK 293
cell line: HEK 293
sirna: siTOE1
expression_construct: FLAG-TOE1WT
target_gene: U4
experimental_condition: WTaddback-siCaf1z
r1_inline_randommer: NNNNNNNNNNNCT
Original files (1)
HEK 293
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134500 5395 663931 0.45 Sample27_Expt2_input-U4-WTaddback-siCaf1z.fastq.gz, SRR2134500, SRR21… SRA
SRX1124455 SRP061801 RNA-Seq SINGLE
GSM1836516: Expt2_input-U4-DEaddback-siCaf1z; Homo sapiens; RNA-Seq
Sample: SRS1016903
BioProject: PRJNA291458
BioSample: SAMN03944453
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: HEK 293
cell line: HEK 293
sirna: siTOE1
expression_construct: FLAG-TOE1DE
target_gene: U4
experimental_condition: DEaddback-siCaf1z
r1_inline_randommer: NNNNNNNNNNNCT
Original files (1)
HEK 293
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134501 5069 624992 0.43 Sample28_Expt2_input-U4-DEaddback-siCaf1z.fastq.gz, SRR2134501, SRR21… SRA
SRX1124456 SRP061801 RIP-Seq SINGLE
GSM1836517: Expt2_elu-U4-WTaddback; Homo sapiens; RIP-Seq
Sample: SRS1016902
BioProject: PRJNA291458
BioSample: SAMN03944454
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: HEK 293
cell line: HEK 293
sirna: siTOE1
expression_construct: FLAG-TOE1WT
target_gene: U4
rip antibody: Mouse anti-FLAG (Sigma)
experimental_condition: WTaddback
r1_inline_randommer: NNNNNNNNNNNCT
Original files (1)
HEK 293
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134502 6621 814280 0.54 Sample29_Expt2_elu-U4-WTaddback.fastq.gz, SRR2134502, SRR2134502.sral… SRA
SRX1124457 SRP061801 RIP-Seq SINGLE
GSM1836518: Expt2_elu-U4-DEaddback; Homo sapiens; RIP-Seq
Sample: SRS1016900
BioProject: PRJNA291458
BioSample: SAMN03944455
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: HEK 293
cell line: HEK 293
sirna: siTOE1
expression_construct: FLAG-TOE1DE
target_gene: U4
rip antibody: Mouse anti-FLAG (Sigma)
experimental_condition: DEaddback
r1_inline_randommer: NNNNNNNNNNCT
Original files (1)
HEK 293
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134503 6477 790531 0.52 Sample30_Expt2_elu-U4-DEaddback.fastq.gz, SRR2134503, SRR2134503.sral… SRA
SRX1124458 SRP061801 RNA-Seq SINGLE
GSM1836519: Expt2_input-U5-WTaddback-siCaf1z; Homo sapiens; RNA-Seq
Sample: SRS1016901
BioProject: PRJNA291458
BioSample: SAMN03944552
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: HEK 293
cell line: HEK 293
sirna: siTOE1
expression_construct: FLAG-TOE1WT
target_gene: U5
experimental_condition: WTaddback-siCaf1z
r1_inline_randommer: NNNNNNNNNNNCT
Original files (1)
HEK 293
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134504 6112 674764 0.39 Sample31_Expt2_input-U5-WTaddback-siCaf1z.fastq.gz, SRR2134504, SRR21… SRA
SRX1124459 SRP061801 RNA-Seq SINGLE
GSM1836520: Expt2_input-U5-DEaddback-siCaf1z; Homo sapiens; RNA-Seq
Sample: SRS1016899
BioProject: PRJNA291458
BioSample: SAMN03944553
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: HEK 293
cell line: HEK 293
sirna: siTOE1
expression_construct: FLAG-TOE1DE
target_gene: U5
experimental_condition: DEaddback-siCaf1z
r1_inline_randommer: NNNNNNNNNNNCT
Original files (1)
HEK 293
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134505 6316 702439 0.4 Sample32_Expt2_input-U5-DEaddback-siCaf1z.fastq.gz, SRR2134505, SRR21… SRA
SRX1124460 SRP061801 RIP-Seq SINGLE
GSM1836521: Expt2_elu-U5-WTaddback; Homo sapiens; RIP-Seq
Sample: SRS1016897
BioProject: PRJNA291458
BioSample: SAMN03944554
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: HEK 293
cell line: HEK 293
sirna: siTOE1
expression_construct: FLAG-TOE1WT
target_gene: U5
rip antibody: Mouse anti-FLAG (Sigma)
experimental_condition: WTaddback
r1_inline_randommer: NNNNNNNNNNNCT
Original files (1)
HEK 293
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134506 6370 702387 0.41 Sample33_Expt2_elu-U5-WTaddback.fastq.gz, SRR2134506, SRR2134506.sral… SRA
SRX1124461 SRP061801 RIP-Seq SINGLE
GSM1836522: Expt2_elu-U5-DEaddback; Homo sapiens; RIP-Seq
Sample: SRS1016898
BioProject: PRJNA291458
BioSample: SAMN03944555
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: HEK 293
cell line: HEK 293
sirna: siTOE1
expression_construct: FLAG-TOE1DE
target_gene: U5
rip antibody: Mouse anti-FLAG (Sigma)
experimental_condition: DEaddback
r1_inline_randommer: NNNNNNNNNNCT
Original files (1)
HEK 293
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134507 5658 631723 0.37 Sample34_Expt2_elu-U5-DEaddback.fastq.gz, SRR2134507, SRR2134507.sral… SRA
SRX1124462 SRP061801 RNA-Seq SINGLE
GSM1836523: Expt2_input-U6-FLAGonly-siLuc; Homo sapiens; RNA-Seq
Sample: SRS1016896
BioProject: PRJNA291458
BioSample: SAMN03944556
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: HEK 293
cell line: HEK 293
sirna: siControl
expression_construct: FLAG
target_gene: U6
experimental_condition: FLAGonly_siLuc
r1_inline_randommer: NNNNNNNNNNCT
Original files (1)
HEK 293
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134508 3853 362962 0.25 Sample35_Expt2_input-U6-FLAGonly-siLuc.fastq.gz, SRR2134508, SRR21345… SRA
SRX1124463 SRP061801 RNA-Seq SINGLE
GSM1836524: Expt2_input-U6-FLAGonly-siCaf1z; Homo sapiens; RNA-Seq
Sample: SRS1016894
BioProject: PRJNA291458
BioSample: SAMN03944557
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: HEK 293
cell line: HEK 293
sirna: siTOE1
expression_construct: FLAG
target_gene: U6
experimental_condition: FLAGonly-siCaf1z
r1_inline_randommer: NNNNNNNNNNCT
Original files (1)
HEK 293
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134509 3798 357995 0.25 Sample36_Expt2_input-U6-FLAGonly-siCaf1z.fastq.gz, SRR2134509, SRR213… SRA
SRX1124464 SRP061801 RNA-Seq SINGLE
GSM1836525: Expt2_input-U6-WTaddback-siCaf1z; Homo sapiens; RNA-Seq
Sample: SRS1016895
BioProject: PRJNA291458
BioSample: SAMN03944558
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: HEK 293
cell line: HEK 293
sirna: siTOE1
expression_construct: FLAG-TOE1WT
target_gene: U6
experimental_condition: WTaddback-siCaf1z
r1_inline_randommer: NNNNNNNNNNNCT
Original files (1)
HEK 293
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134510 4482 417892 0.28 Sample37_Expt2_input-U6-WTaddback-siCaf1z.fastq.gz, SRR2134510, SRR21… SRA
SRX1124465 SRP061801 RNA-Seq SINGLE
GSM1836526: Expt2_input-U6-DEaddback-siCaf1z; Homo sapiens; RNA-Seq
Sample: SRS1016893
BioProject: PRJNA291458
BioSample: SAMN03944559
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: HEK 293
cell line: HEK 293
sirna: siTOE1
expression_construct: FLAG-TOE1DE
target_gene: U6
experimental_condition: DEaddback-siCaf1z
r1_inline_randommer: NNNNNNNNNNNCT
Original files (1)
HEK 293
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134511 4355 421201 0.28 Sample38_Expt2_input-U6-DEaddback-siCaf1z.fastq.gz, SRR2134511, SRR21… SRA
SRX1124466 SRP061801 RIP-Seq SINGLE
GSM1836527: Expt2_elu-U6-Wtaddback; Homo sapiens; RIP-Seq
Sample: SRS1016892
BioProject: PRJNA291458
BioSample: SAMN03944560
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: HEK 293
cell line: HEK 293
sirna: siTOE1
expression_construct: FLAG-TOE1WT
target_gene: U6
rip antibody: Mouse anti-FLAG (Sigma)
experimental_condition: WTaddback
r1_inline_randommer: NNNNNNNNNNNCT
Original files (1)
HEK 293
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134512 5240 497389 0.32 Sample39_Expt2_elu-U6-Wtaddback.fastq.gz, SRR2134512, SRR2134512.sral… SRA
SRX1124467 SRP061801 RIP-Seq SINGLE
GSM1836528: Expt2_elu-U6-DEaddback; Homo sapiens; RIP-Seq
Sample: SRS1016891
BioProject: PRJNA291458
BioSample: SAMN03944561
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: HEK 293
cell line: HEK 293
sirna: siTOE1
expression_construct: FLAG-TOE1DE
target_gene: U6
rip antibody: Mouse anti-FLAG (Sigma)
experimental_condition: DEaddback
r1_inline_randommer: NNNNNNNNNNCT
Original files (1)
HEK 293
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134513 5782 532146 0.34 Sample40_Expt2_elu-U6-DEaddback.fastq.gz, SRR2134513, SRR2134513.sral… SRA
SRX1124468 SRP061801 RNA-Seq SINGLE
GSM1836529: Expt3_input-U1-FLAGonly-siLuc; Homo sapiens; RNA-Seq
Sample: SRS1016890
BioProject: PRJNA291458
BioSample: SAMN03944562
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: HEK 293
cell line: HEK 293
sirna: siControl
expression_construct: FLAG
target_gene: U1
experimental_condition: FLAGonly_siLuc
r1_inline_randommer: NNNNNNNNNNCT
Original files (1)
HEK 293
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134514 37027 4745529 2.29 Sample41_Expt3_input-U1-FLAGonly-siLuc.fastq.gz, SRR2134514, SRR21345… SRA
SRX1124469 SRP061801 RNA-Seq SINGLE
GSM1836530: Expt3_input-U1-FLAGonly-siCaf1z; Homo sapiens; RNA-Seq
Sample: SRS1016889
BioProject: PRJNA291458
BioSample: SAMN03944563
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: HEK 293
cell line: HEK 293
sirna: siTOE1
expression_construct: FLAG
target_gene: U1
experimental_condition: FLAGonly-siCaf1z
r1_inline_randommer: NNNNNNNNNNCT
Original files (1)
HEK 293
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134515 42451 5471670 2.68 Sample42_Expt3_input-U1-FLAGonly-siCaf1z.fastq.gz, SRR2134515, SRR213… SRA
SRX1124470 SRP061801 RNA-Seq SINGLE
GSM1836531: Expt3_input-U1-WTaddback-siCaf1z; Homo sapiens; RNA-Seq
Sample: SRS1016888
BioProject: PRJNA291458
BioSample: SAMN03944564
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: HEK 293
cell line: HEK 293
sirna: siTOE1
expression_construct: FLAG-TOE1WT
target_gene: U1
experimental_condition: WTaddback-siCaf1z
r1_inline_randommer: NNNNNNNNNNNCT
Original files (1)
HEK 293
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134516 58893 7626860 3.65 Sample43_Expt3_input-U1-WTaddback-siCaf1z.fastq.gz, SRR2134516, SRR21… SRA
SRX1124471 SRP061801 RNA-Seq SINGLE
GSM1836532: Expt3_input-U1-DEaddback-siCaf1z; Homo sapiens; RNA-Seq
Sample: SRS1016886
BioProject: PRJNA291458
BioSample: SAMN03944565
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: HEK 293
cell line: HEK 293
sirna: siTOE1
expression_construct: FLAG-TOE1DE
target_gene: U1
experimental_condition: DEaddback-siCaf1z
r1_inline_randommer: NNNNNNNNNNNCT
Original files (1)
HEK 293
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134517 38630 5006446 2.46 Sample44_Expt3_input-U1-DEaddback-siCaf1z.fastq.gz, SRR2134517, SRR21… SRA
SRX1124472 SRP061801 RIP-Seq SINGLE
GSM1836533: Expt3_elu-U1-WTaddback; Homo sapiens; RIP-Seq
Sample: SRS1016887
BioProject: PRJNA291458
BioSample: SAMN03944566
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: HEK 293
cell line: HEK 293
sirna: siTOE1
expression_construct: FLAG-TOE1WT
target_gene: U1
rip antibody: Mouse anti-FLAG (Sigma)
experimental_condition: WTaddback
r1_inline_randommer: NNNNNNNNNNCT
Original files (1)
HEK 293
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134518 47279 6275621 3.08 Sample45_Expt3_elu-U1-WTaddback.fastq.gz, SRR2134518, SRR2134518.sral… SRA
SRX1124473 SRP061801 RIP-Seq SINGLE
GSM1836534: Expt3_elu-U1-Deaddback; Homo sapiens; RIP-Seq
Sample: SRS1016885
BioProject: PRJNA291458
BioSample: SAMN03944567
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: HEK 293
cell line: HEK 293
sirna: siTOE1
expression_construct: FLAG-TOE1DE
target_gene: U1
rip antibody: Mouse anti-FLAG (Sigma)
experimental_condition: DEaddback
r1_inline_randommer: NNNNNNNNNNNCT
Original files (1)
HEK 293
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134519 53503 7324739 3.6 Sample46_Expt3_elu-U1-Deaddback.fastq.gz, SRR2134519, SRR2134519.sral… SRA
SRX1124474 SRP061801 RNA-Seq SINGLE
GSM1836535: Expt3_input-U2-FLAGonly-siLuc; Homo sapiens; RNA-Seq
Sample: SRS1016884
BioProject: PRJNA291458
BioSample: SAMN03944568
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: HEK 293
cell line: HEK 293
sirna: siControl
expression_construct: FLAG
target_gene: U2
experimental_condition: FLAGonly_siLuc
r1_inline_randommer: NNNNNNNNNNCT
Original files (1)
HEK 293
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134520 105776 7171351 3.83 Sample47_Expt3_input-U2-FLAGonly-siLuc.fastq.gz, SRR2134520, SRR21345… SRA
SRX1124475 SRP061801 RNA-Seq SINGLE
GSM1836536: Expt3_input-U2-FLAGonly-siCaf1z; Homo sapiens; RNA-Seq
Sample: SRS1016883
BioProject: PRJNA291458
BioSample: SAMN03944569
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: HEK 293
cell line: HEK 293
sirna: siTOE1
expression_construct: FLAG
target_gene: U2
experimental_condition: FLAGonly-siCaf1z
r1_inline_randommer: NNNNNNNNNNCT
Original files (1)
HEK 293
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134521 43242 3007782 1.64 Sample48_Expt3_input-U2-FLAGonly-siCaf1z.fastq.gz, SRR2134521, SRR213… SRA
SRX1124476 SRP061801 RNA-Seq SINGLE
GSM1836537: Expt3_input-U2-WTaddback-siCaf1z; Homo sapiens; RNA-Seq
Sample: SRS1016882
BioProject: PRJNA291458
BioSample: SAMN03944570
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: HEK 293
cell line: HEK 293
sirna: siTOE1
expression_construct: FLAG-TOE1WT
target_gene: U2
experimental_condition: WTaddback-siCaf1z
r1_inline_randommer: NNNNNNNNNNNCT
Original files (1)
HEK 293
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134522 57278 3929693 2.14 Sample49_Expt3_input-U2-WTaddback-siCaf1z.fastq.gz, SRR2134522, SRR21… SRA
SRX1124477 SRP061801 RNA-Seq SINGLE
GSM1836538: Expt3_input-U2-DEaddback-siCaf1z; Homo sapiens; RNA-Seq
Sample: SRS1016881
BioProject: PRJNA291458
BioSample: SAMN03944571
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: HEK 293
cell line: HEK 293
sirna: siTOE1
expression_construct: FLAG-TOE1DE
target_gene: U2
experimental_condition: DEaddback-siCaf1z
r1_inline_randommer: NNNNNNNNNNNCT
Original files (1)
HEK 293
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134523 35733 2529687 1.39 Sample50_Expt3_input-U2-DEaddback-siCaf1z.fastq.gz, SRR2134523, SRR21… SRA
SRX1124478 SRP061801 RIP-Seq SINGLE
GSM1836539: Expt3_elu-U2-WTaddback; Homo sapiens; RIP-Seq
Sample: SRS1016879
BioProject: PRJNA291458
BioSample: SAMN03944572
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: HEK 293
cell line: HEK 293
sirna: siTOE1
expression_construct: FLAG-TOE1WT
target_gene: U2
rip antibody: Mouse anti-FLAG (Sigma)
experimental_condition: WTaddback
r1_inline_randommer: NNNNNNNNNNCT
Original files (1)
HEK 293
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134524 62255 4431283 2.43 Sample51_Expt3_elu-U2-WTaddback.fastq.gz, SRR2134524, SRR2134524.sral… SRA
SRX1124479 SRP061801 RIP-Seq SINGLE
GSM1836540: Expt3_elu-U2-DEaddback; Homo sapiens; RIP-Seq
Sample: SRS1016880
BioProject: PRJNA291458
BioSample: SAMN03944574
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: HEK 293
cell line: HEK 293
sirna: siTOE1
expression_construct: FLAG-TOE1DE
target_gene: U2
rip antibody: Mouse anti-FLAG (Sigma)
experimental_condition: DEaddback
r1_inline_randommer: NNNNNNNNNNNCT
Original files (1)
HEK 293
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134525 40506 3013122 1.66 Sample52_Expt3_elu-U2-DEaddback.fastq.gz, SRR2134525, SRR2134525.sral… SRA
SRX1124480 SRP061801 RNA-Seq SINGLE
GSM1836541: Expt3_input-U4-FLAGonly-siLuc; Homo sapiens; RNA-Seq
Sample: SRS1016878
BioProject: PRJNA291458
BioSample: SAMN03944575
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: HEK 293
cell line: HEK 293
sirna: siControl
expression_construct: FLAG
target_gene: U4
experimental_condition: FLAGonly_siLuc
r1_inline_randommer: NNNNNNNNNNCT
Original files (1)
HEK 293
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134526 64175 7828530 4.41 Sample53_Expt3_input-U4-FLAGonly-siLuc.fastq.gz, SRR2134526, SRR21345… SRA
SRX1124481 SRP061801 RNA-Seq SINGLE
GSM1836542: Expt3_input-U4-FLAGonly-siCaf1z; Homo sapiens; RNA-Seq
Sample: SRS1016876
BioProject: PRJNA291458
BioSample: SAMN03944576
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: HEK 293
cell line: HEK 293
sirna: siTOE1
expression_construct: FLAG
target_gene: U4
experimental_condition: FLAGonly-siCaf1z
r1_inline_randommer: NNNNNNNNNNCT
Original files (1)
HEK 293
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134527 53246 6513827 3.7 Sample54_Expt3_input-U4-FLAGonly-siCaf1z.fastq.gz, SRR2134527, SRR213… SRA
SRX1124482 SRP061801 RNA-Seq SINGLE
GSM1836543: Expt3_input-U4-WTaddback-siCaf1z; Homo sapiens; RNA-Seq
Sample: SRS1016877
BioProject: PRJNA291458
BioSample: SAMN03944577
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: HEK 293
cell line: HEK 293
sirna: siTOE1
expression_construct: FLAG-TOE1WT
target_gene: U4
experimental_condition: WTaddback-siCaf1z
r1_inline_randommer: NNNNNNNNNNNCT
Original files (1)
HEK 293
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134528 66132 8133250 4.57 Sample55_Expt3_input-U4-WTaddback-siCaf1z.fastq.gz, SRR2134528, SRR21… SRA
SRX1124483 SRP061801 RNA-Seq SINGLE
GSM1836544: Expt3_input-U4-DEaddback-siCaf1z; Homo sapiens; RNA-Seq
Sample: SRS1016875
BioProject: PRJNA291458
BioSample: SAMN03944578
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: HEK 293
cell line: HEK 293
sirna: siTOE1
expression_construct: FLAG-TOE1DE
target_gene: U4
experimental_condition: DEaddback-siCaf1z
r1_inline_randommer: NNNNNNNNNNNCT
Original files (1)
HEK 293
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134529 41256 5093831 2.92 Sample56_Expt3_input-U4-DEaddback-siCaf1z.fastq.gz, SRR2134529, SRR21… SRA
SRX1124484 SRP061801 RIP-Seq SINGLE
GSM1836545: Expt3_elu-U4-WTaddback; Homo sapiens; RIP-Seq
Sample: SRS1016874
BioProject: PRJNA291458
BioSample: SAMN03944579
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: HEK 293
cell line: HEK 293
sirna: siTOE1
expression_construct: FLAG-TOE1WT
target_gene: U4
rip antibody: Mouse anti-FLAG (Sigma)
experimental_condition: WTaddback
r1_inline_randommer: NNNNNNNNNNCT
Original files (1)
HEK 293
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134530 55035 6700226 3.86 Sample57_Expt3_elu-U4-WTaddback.fastq.gz, SRR2134530, SRR2134530.sral… SRA
SRX1124485 SRP061801 RIP-Seq SINGLE
GSM1836546: Expt3_elu-U4-DEaddback; Homo sapiens; RIP-Seq
Sample: SRS1016873
BioProject: PRJNA291458
BioSample: SAMN03944486
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: HEK 293
cell line: HEK 293
sirna: siTOE1
expression_construct: FLAG-TOE1DE
target_gene: U4
rip antibody: Mouse anti-FLAG (Sigma)
experimental_condition: DEaddback
r1_inline_randommer: NNNNNNNNNNNCT
Original files (1)
HEK 293
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134531 53739 6643550 3.79 Sample58_Expt3_elu-U4-DEaddback.fastq.gz, SRR2134531, SRR2134531.sral… SRA
SRX1124486 SRP061801 RNA-Seq SINGLE
GSM1836547: Expt3_input-U5-WTaddback-siCaf1z; Homo sapiens; RNA-Seq
Sample: SRS1016871
BioProject: PRJNA291458
BioSample: SAMN03944487
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: HEK 293
cell line: HEK 293
sirna: siTOE1
expression_construct: FLAG-TOE1WT
target_gene: U5
experimental_condition: WTaddback-siCaf1z
r1_inline_randommer: NNNNNNNNNNNCT
Original files (1)
HEK 293
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134532 75756 8325588 3.97 Sample59_Expt3_input-U5-WTaddback-siCaf1z.fastq.gz, SRR2134532, SRR21… SRA
SRX1124487 SRP061801 RNA-Seq SINGLE
GSM1836548: Expt3_input-U5-DEaddback-siCaf1z; Homo sapiens; RNA-Seq
Sample: SRS1016872
BioProject: PRJNA291458
BioSample: SAMN03944488
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: HEK 293
cell line: HEK 293
sirna: siTOE1
expression_construct: FLAG-TOE1DE
target_gene: U5
experimental_condition: DEaddback-siCaf1z
r1_inline_randommer: NNNNNNNNNNNCT
Original files (1)
HEK 293
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134533 51835 5752242 2.74 Sample60_Expt3_input-U5-DEaddback-siCaf1z.fastq.gz, SRR2134533, SRR21… SRA
SRX1124488 SRP061801 RIP-Seq SINGLE
GSM1836549: Expt3_elu-U5-WTaddback; Homo sapiens; RIP-Seq
Sample: SRS1016869
BioProject: PRJNA291458
BioSample: SAMN03944573
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: HEK 293
cell line: HEK 293
sirna: siTOE1
expression_construct: FLAG-TOE1WT
target_gene: U5
rip antibody: Mouse anti-FLAG (Sigma)
experimental_condition: WTaddback
r1_inline_randommer: NNNNNNNNNNCT
Original files (1)
HEK 293
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134534 47785 5126079 2.51 Sample61_Expt3_elu-U5-WTaddback.fastq.gz, SRR2134534, SRR2134534.sral… SRA
SRX1124489 SRP061801 RIP-Seq SINGLE
GSM1836550: Expt3_elu-U5-DEaddback; Homo sapiens; RIP-Seq
Sample: SRS1016870
BioProject: PRJNA291458
BioSample: SAMN03944489
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: HEK 293
cell line: HEK 293
sirna: siTOE1
expression_construct: FLAG-TOE1DE
target_gene: U5
rip antibody: Mouse anti-FLAG (Sigma)
experimental_condition: DEaddback
r1_inline_randommer: NNNNNNNNNNNCT
Original files (1)
HEK 293
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134535 40657 4568147 2.24 Sample62_Expt3_elu-U5-DEaddback.fastq.gz, SRR2134535, SRR2134535.sral… SRA
SRX1124490 SRP061801 RNA-Seq SINGLE
GSM1836551: Expt8_PATFIB_U1_ATCC; Homo sapiens; RNA-Seq
Sample: SRS1016868
BioProject: PRJNA291458
BioSample: SAMN03944490
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: Primary Fibroblast
cell type: Primary Fibroblast
expression_construct: TOE1WT
target_gene: U1
r1_inline_randommer: NNNNNNNNNNCT
Original files (1)
Primary Fibroblast
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134536 145071 18986198 8.74 Sample63_Expt8_PATFIB_U1_ATCC.fastq.gz, SRR2134536, SRR2134536.sralite SRA
SRX1124491 SRP061801 RNA-Seq SINGLE
GSM1836552: Expt8_PATFIB_U1_1603A; Homo sapiens; RNA-Seq
Sample: SRS1016867
BioProject: PRJNA291458
BioSample: SAMN03944491
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: Primary Fibroblast
cell type: Primary Fibroblast
expression_construct: TOE1E220K/E220K
target_gene: U1
r1_inline_randommer: NNNNNNNNNNNCT
Original files (1)
Primary Fibroblast
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134537 138343 18209100 8.74 Sample64_Expt8_PATFIB_U1_1603A.fastq.gz, SRR2134537, SRR2134537.srali… SRA
SRX1124492 SRP061801 RNA-Seq SINGLE
GSM1836553: Expt8_PATFIB_U1_1603U; Homo sapiens; RNA-Seq
Sample: SRS1016866
BioProject: PRJNA291458
BioSample: SAMN03944492
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: Primary Fibroblast
cell type: Primary Fibroblast
expression_construct: TOE1WT/E220K
target_gene: U1
r1_inline_randommer: NNNNNNNNNNNCT
Original files (1)
Primary Fibroblast
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134538 86703 11343174 5.29 Sample65_Expt8_PATFIB_U1_1603U.fastq.gz, SRR2134538, SRR2134538.srali… SRA
SRX1124493 SRP061801 RNA-Seq SINGLE
GSM1836554: Expt8_PATFIB_U1_4127A; Homo sapiens; RNA-Seq
Sample: SRS1016864
BioProject: PRJNA291458
BioSample: SAMN03944493
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: Primary Fibroblast
cell type: Primary Fibroblast
expression_construct: TOE1F148Y/F148Y
target_gene: U1
r1_inline_randommer: NNNNNNNNNNNCT
Original files (1)
Primary Fibroblast
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134539 124416 16481835 8.12 Sample66_Expt8_PATFIB_U1_4127A.fastq.gz, SRR2134539, SRR2134539.srali… SRA
SRX1124494 SRP061801 RNA-Seq SINGLE
GSM1836555: Expt8_PATFIB_U1_4128A; Homo sapiens; RNA-Seq
Sample: SRS1016865
BioProject: PRJNA291458
BioSample: SAMN03944494
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: Primary Fibroblast
cell type: Primary Fibroblast
expression_construct: TOE1A103T/A103T
target_gene: U1
r1_inline_randommer: NNNNNNNNNNNCT
Original files (1)
Primary Fibroblast
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134540 141085 18667889 9.13 Sample67_Expt8_PATFIB_U1_4128A.fastq.gz, SRR2134540, SRR2134540.srali… SRA
SRX1124495 SRP061801 RNA-Seq SINGLE
GSM1836556: Expt8_PATFIB_U1_4128U; Homo sapiens; RNA-Seq
Sample: SRS1016863
BioProject: PRJNA291458
BioSample: SAMN03944495
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: Primary Fibroblast
cell type: Primary Fibroblast
expression_construct: TOE1WT/A103T
target_gene: U1
r1_inline_randommer: NNNNNNNNNNNCT
Original files (1)
Primary Fibroblast
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134541 193915 25576050 11.81 Sample68_Expt8_PATFIB_U1_4128U.fastq.gz, SRR2134541, SRR2134541.srali… SRA
SRX1124496 SRP061801 RIP-Seq SINGLE
GSM1836557: Expt4_input-U5-FLAGonly-siLuc; Homo sapiens; RIP-Seq
Sample: SRS1016861
BioProject: PRJNA291458
BioSample: SAMN03944496
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: HEK 293
cell line: HEK 293
sirna: siTOE1
expression_construct: FLAG
target_gene: U5
experimental_condition: FLAGonly-siLuc
r1_inline_randommer: NNNNNNNNNNCT
Original files (1)
HEK 293
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134542 33829 3668262 2.0 Sample69_Expt4_input-U5-FLAGonly-siLuc.fastq.gz, SRR2134542, SRR21345… SRA
SRX1124497 SRP061801 RIP-Seq SINGLE
GSM1836558: Expt4_input-U5-FLAGonly-Caf1z; Homo sapiens; RIP-Seq
Sample: SRS1016862
BioProject: PRJNA291458
BioSample: SAMN03944497
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: HEK 293
cell line: HEK 293
sirna: siTOE1
expression_construct: FLAG
target_gene: U5
experimental_condition: FLAGonly-siCaf1z
r1_inline_randommer: NNNNNNNNNNCT
Original files (1)
HEK 293
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134543 29225 3201717 1.76 Sample70_Expt4_input-U5-FLAGonly-Caf1z.fastq.gz, SRR2134543, SRR21345… SRA
SRX1124498 SRP061801 RIP-Seq SINGLE
GSM1836559: Expt5_FU1-Vs-01_V173_rip; Homo sapiens; RIP-Seq
Sample: SRS1016859
BioProject: PRJNA291458
BioSample: SAMN03944498
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: HEK 293
cell line: HEK 293
sirna: siTOE1
expression_construct: FLAG-TOE1V173G
target_gene: U1
rip antibody: Mouse anti-FLAG (Sigma)
experimental_condition: V173 addback
r1_inline_randommer: NNNNNNNNNNCT
Original files (1)
HEK 293
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134544 17744 2261899 1.16 Sample71_Expt5_FU1-Vs-01_V173_rip.fastq.gz, SRR2134544, SRR2134544.sr… SRA
SRX1124499 SRP061801 RIP-Seq SINGLE
GSM1836560: Expt5_FU1-Vs-02_E220_rip; Homo sapiens; RIP-Seq
Sample: SRS1016860
BioProject: PRJNA291458
BioSample: SAMN03944499
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: HEK 293
cell line: HEK 293
sirna: siTOE1
expression_construct: FLAG-TOE1E220K
target_gene: U1
rip antibody: Mouse anti-FLAG (Sigma)
experimental_condition: E220 addback
r1_inline_randommer: NNNNNNNNNNCT
Original files (1)
HEK 293
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134545 18340 2399059 1.22 Sample72_Expt5_FU1-Vs-02_E220_rip.fastq.gz, SRR2134545, SRR2134545.sr… SRA
SRX1124500 SRP061801 RIP-Seq SINGLE
GSM1836561: Expt5_FU1-Vs-03_wt_rip; Homo sapiens; RIP-Seq
Sample: SRS1016858
BioProject: PRJNA291458
BioSample: SAMN03944500
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: HEK 293
cell line: HEK 293
sirna: siTOE1
expression_construct: FLAG-TOE1WT
target_gene: U1
rip antibody: Mouse anti-FLAG (Sigma)
experimental_condition: WTaddback
r1_inline_randommer: NNNNNNNNNNCT
Original files (1)
HEK 293
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134546 11547 1521184 0.8 Sample73_Expt5_FU1-Vs-03_wt_rip.fastq.gz, SRR2134546, SRR2134546.sral… SRA
SRX1124501 SRP061801 RIP-Seq SINGLE
GSM1836562: Expt5_FU1-Vs-04_de_rip; Homo sapiens; RIP-Seq
Sample: SRS1016856
BioProject: PRJNA291458
BioSample: SAMN03944501
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: HEK 293
cell line: HEK 293
sirna: siTOE1
expression_construct: FLAG-TOE1DE
target_gene: U1
rip antibody: Mouse anti-FLAG (Sigma)
experimental_condition: DEaddback
r1_inline_randommer: NNNNNNNNNNCT
Original files (1)
HEK 293
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134547 26144 3559268 1.77 Sample74_Expt5_FU1-Vs-04_de_rip.fastq.gz, SRR2134547, SRR2134547.sral… SRA
SRX1124502 SRP061801 RIP-Seq SINGLE
GSM1836563: Expt5_FU1-Vs-05_a103_rip; Homo sapiens; RIP-Seq
Sample: SRS1016857
BioProject: PRJNA291458
BioSample: SAMN03944502
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: HEK 293
cell line: HEK 293
sirna: siTOE1
expression_construct: FLAG-TOE1A103T
target_gene: U1
rip antibody: Mouse anti-FLAG (Sigma)
experimental_condition: A103 addback
r1_inline_randommer: NNNNNNNNNNNCT
Original files (1)
HEK 293
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134548 27958 3703000 1.83 Sample75_Expt5_FU1-Vs-05_a103_rip.fastq.gz, SRR2134548, SRR2134548.sr… SRA
SRX1124503 SRP061801 RIP-Seq SINGLE
GSM1836564: Expt5_FU1-Vs-06_f148_rip; Homo sapiens; RIP-Seq
Sample: SRS1016854
BioProject: PRJNA291458
BioSample: SAMN03944503
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: HEK 293
cell line: HEK 293
sirna: siTOE1
expression_construct: FLAG-TOE1F148Y
target_gene: U1
rip antibody: Mouse anti-FLAG (Sigma)
experimental_condition: F148 addback
r1_inline_randommer: NNNNNNNNNNNCT
Original files (1)
HEK 293
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134549 15933 2088797 1.07 Sample76_Expt5_FU1-Vs-06_f148_rip.fastq.gz, SRR2134549, SRR2134549.sr… SRA
SRX1124504 SRP061801 RNA-Seq SINGLE
GSM1836565: Expt5_FU1-Vs-12_siL_tot; Homo sapiens; RNA-Seq
Sample: SRS1016853
BioProject: PRJNA291458
BioSample: SAMN03944504
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: HEK 293
cell line: HEK 293
sirna: siControl
expression_construct: FLAG
target_gene: U1
experimental_condition: FLAGonly_siLuc
r1_inline_randommer: NNNNNNNNNNCT
Original files (1)
HEK 293
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134550 21089 2724584 1.33 Sample77_Expt5_FU1-Vs-12_siL_tot.fastq.gz, SRR2134550, SRR2134550.sra… SRA
SRX1124505 SRP061801 RNA-Seq SINGLE
GSM1836566: Expt5_FU1-Vs-13_siC_tot; Homo sapiens; RNA-Seq
Sample: SRS1016852
BioProject: PRJNA291458
BioSample: SAMN03944505
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: HEK 293
cell line: HEK 293
sirna: siTOE1
expression_construct: FLAG
target_gene: U1
experimental_condition: FLAGonly-siCaf1z
r1_inline_randommer: NNNNNNNNNNCT
Original files (1)
HEK 293
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134551 24895 3205649 1.58 Sample78_Expt5_FU1-Vs-13_siC_tot.fastq.gz, SRR2134551, SRR2134551.sra… SRA
SRX1124506 SRP061801 RNA-Seq SINGLE
GSM1836567: Expt5_FU1-Vs-14_wt_tot; Homo sapiens; RNA-Seq
Sample: SRS1016855
BioProject: PRJNA291458
BioSample: SAMN03944506
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: HEK 293
cell line: HEK 293
sirna: siTOE1
expression_construct: FLAG-TOE1WT
target_gene: U1
experimental_condition: WTaddback-siCaf1z
r1_inline_randommer: NNNNNNNNNNNCT
Original files (1)
HEK 293
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134552 26970 3490362 1.69 Sample79_Expt5_FU1-Vs-14_wt_tot.fastq.gz, SRR2134552, SRR2134552.sral… SRA
SRX1124507 SRP061801 RNA-Seq SINGLE
GSM1836568: Expt5_FU1-Vs-15_de_tot; Homo sapiens; RNA-Seq
Sample: SRS1016850
BioProject: PRJNA291458
BioSample: SAMN03944507
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: HEK 293
cell line: HEK 293
sirna: siTOE1
expression_construct: FLAG-TOE1DE
target_gene: U1
experimental_condition: DEaddback-siCaf1z
r1_inline_randommer: NNNNNNNNNNNCT
Original files (1)
HEK 293
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134553 34350 4429637 2.16 Sample80_Expt5_FU1-Vs-15_de_tot.fastq.gz, SRR2134553, SRR2134553.sral… SRA
SRX1124508 SRP061801 RNA-Seq SINGLE
GSM1836569: Expt5_FU1-Vs-16_a103_tot; Homo sapiens; RNA-Seq
Sample: SRS1016851
BioProject: PRJNA291458
BioSample: SAMN03944508
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: HEK 293
cell line: HEK 293
sirna: siTOE1
expression_construct: FLAG-TOE1A103T
target_gene: U1
experimental_condition: A103 addback - siCaf1z
r1_inline_randommer: NNNNNNNNNNCT
Original files (1)
HEK 293
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134554 23732 3046641 1.47 Sample81_Expt5_FU1-Vs-16_a103_tot.fastq.gz, SRR2134554, SRR2134554.sr… SRA
SRX1124509 SRP061801 RNA-Seq SINGLE
GSM1836570: Expt5_FU1-Vs-17_f148_tot; Homo sapiens; RNA-Seq
Sample: SRS1016849
BioProject: PRJNA291458
BioSample: SAMN03944509
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: HEK 293
cell line: HEK 293
sirna: siTOE1
expression_construct: FLAG-TOE1F148Y
target_gene: U1
experimental_condition: F148 addback- siCaf1z
r1_inline_randommer: NNNNNNNNNNCT
Original files (1)
HEK 293
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134555 27836 3555286 1.72 Sample82_Expt5_FU1-Vs-17_f148_tot.fastq.gz, SRR2134555, SRR2134555.sr… SRA
SRX1124510 SRP061801 RNA-Seq SINGLE
GSM1836571: Expt5_FU1-Vs-18_v173_tot; Homo sapiens; RNA-Seq
Sample: SRS1016777
BioProject: PRJNA291458
BioSample: SAMN03944510
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: HEK 293
cell line: HEK 293
sirna: siTOE1
expression_construct: FLAG-TOE1V173G
target_gene: U1
experimental_condition: V173 addback- siCaf1z
r1_inline_randommer: NNNNNNNNNNNCT
Original files (1)
HEK 293
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134556 28435 3624506 1.77 Sample83_Expt5_FU1-Vs-18_v173_tot.fastq.gz, SRR2134556, SRR2134556.sr… SRA
SRX1124511 SRP061801 RNA-Seq SINGLE
GSM1836572: Expt5_FU1-Vs-19_e220_tot; Homo sapiens; RNA-Seq
Sample: SRS1016848
BioProject: PRJNA291458
BioSample: SAMN03944511
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: HEK 293
cell line: HEK 293
sirna: siTOE1
expression_construct: FLAG-TOE1E220K
target_gene: U1
experimental_condition: E220 addback- siCaf1z
r1_inline_randommer: NNNNNNNNNNNCT
Original files (1)
HEK 293
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134557 23932 3051064 1.49 Sample84_Expt5_FU1-Vs-19_e220_tot.fastq.gz, SRR2134557, SRR2134557.sr… SRA
SRX1124512 SRP061801 RNA-Seq SINGLE
GSM1836573: Expt8_PATFIB_U2_ATCC; Homo sapiens; RNA-Seq
Sample: SRS1016847
BioProject: PRJNA291458
BioSample: SAMN03944512
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: Primary Fibroblast
cell type: Primary Fibroblast
expression_construct: TOE1WT
target_gene: U2
r1_inline_randommer: NNNNNNNNNNCT
Original files (1)
Primary Fibroblast
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134558 23248 1574226 0.88 Sample85_Expt8_PATFIB_U2_ATCC.fastq.gz, SRR2134558, SRR2134558.sralite SRA
SRX1124513 SRP061801 RNA-Seq SINGLE
GSM1836574: Expt8_PATFIB_U2_1603A; Homo sapiens; RNA-Seq
Sample: SRS1016845
BioProject: PRJNA291458
BioSample: SAMN03944513
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: Primary Fibroblast
cell type: Primary Fibroblast
expression_construct: TOE1E220K/E220K
target_gene: U2
r1_inline_randommer: NNNNNNNNNNCT
Original files (1)
Primary Fibroblast
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134559 17264 1184943 0.67 Sample86_Expt8_PATFIB_U2_1603A.fastq.gz, SRR2134559, SRR2134559.srali… SRA
SRX1124514 SRP061801 RNA-Seq SINGLE
GSM1836575: Expt8_PATFIB_U2_1603U; Homo sapiens; RNA-Seq
Sample: SRS1016844
BioProject: PRJNA291458
BioSample: SAMN03944514
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: Primary Fibroblast
cell type: Primary Fibroblast
expression_construct: TOE1WT/E220K
target_gene: U2
r1_inline_randommer: NNNNNNNNNNCT
Original files (1)
Primary Fibroblast
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134560 19672 1337655 0.76 Sample87_Expt8_PATFIB_U2_1603U.fastq.gz, SRR2134560, SRR2134560.srali… SRA
SRX1124515 SRP061801 RNA-Seq SINGLE
GSM1836576: Expt8_PATFIB_U2_4127A; Homo sapiens; RNA-Seq
Sample: SRS1016846
BioProject: PRJNA291458
BioSample: SAMN03944515
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: Primary Fibroblast
cell type: Primary Fibroblast
expression_construct: TOE1F148Y/F148Y
target_gene: U2
r1_inline_randommer: NNNNNNNNNNNCT
Original files (1)
Primary Fibroblast
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134561 29010 2016976 1.09 Sample88_Expt8_PATFIB_U2_4127A.fastq.gz, SRR2134561, SRR2134561.srali… SRA
SRX1124516 SRP061801 RNA-Seq SINGLE
GSM1836577: Expt8_PATFIB_U2_4128A; Homo sapiens; RNA-Seq
Sample: SRS1016842
BioProject: PRJNA291458
BioSample: SAMN03944522
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: Primary Fibroblast
cell type: Primary Fibroblast
expression_construct: TOE1A103T/A103T
target_gene: U2
r1_inline_randommer: NNNNNNNNNNNCT
Original files (1)
Primary Fibroblast
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134562 17631 1241168 0.71 Sample89_Expt8_PATFIB_U2_4128A.fastq.gz, SRR2134562, SRR2134562.srali… SRA
SRX1124517 SRP061801 RNA-Seq SINGLE
GSM1836578: Expt8_PATFIB_U2_4128U; Homo sapiens; RNA-Seq
Sample: SRS1016841
BioProject: PRJNA291458
BioSample: SAMN03944523
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: Primary Fibroblast
cell type: Primary Fibroblast
expression_construct: TOE1WT/A103T
target_gene: U2
r1_inline_randommer: NNNNNNNNNNNCT
Original files (1)
Primary Fibroblast
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134563 26255 1809919 0.99 Sample90_Expt8_PATFIB_U2_4128U.fastq.gz, SRR2134563, SRR2134563.srali… SRA
SRX1124518 SRP061801 RNA-Seq SINGLE
GSM1836579: Expt8_PATFIB_U5_ATCC; Homo sapiens; RNA-Seq
Sample: SRS1016843
BioProject: PRJNA291458
BioSample: SAMN03944524
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: Primary Fibroblast
cell type: Primary Fibroblast
expression_construct: TOE1WT
target_gene: U5
r1_inline_randommer: NNNNNNNNNNCT
Original files (1)
Primary Fibroblast
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134564 32281 3528691 1.7 Sample91_Expt8_PATFIB_U5_ATCC.fastq.gz, SRR2134564, SRR2134564.sralite SRA
SRX1124519 SRP061801 RNA-Seq SINGLE
GSM1836580: Expt8_PATFIB_U5_1603A; Homo sapiens; RNA-Seq
Sample: SRS1016839
BioProject: PRJNA291458
BioSample: SAMN03944525
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: Primary Fibroblast
cell type: Primary Fibroblast
expression_construct: TOE1E220K/E220K
target_gene: U5
r1_inline_randommer: NNNNNNNNNNCT
Original files (1)
Primary Fibroblast
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134565 10604 1170939 0.6 Sample92_Expt8_PATFIB_U5_1603A.fastq.gz, SRR2134565, SRR2134565.srali… SRA
SRX1124520 SRP061801 RNA-Seq SINGLE
GSM1836581: Expt8_PATFIB_U5_1603U; Homo sapiens; RNA-Seq
Sample: SRS1016840
BioProject: PRJNA291458
BioSample: SAMN03944526
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: Primary Fibroblast
cell type: Primary Fibroblast
expression_construct: TOE1WT/E220K
target_gene: U5
r1_inline_randommer: NNNNNNNNNNCT
Original files (1)
Primary Fibroblast
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134566 17279 1891925 0.94 Sample93_Expt8_PATFIB_U5_1603U.fastq.gz, SRR2134566, SRR2134566.srali… SRA
SRX1124521 SRP061801 RNA-Seq SINGLE
GSM1836582: Expt8_PATFIB_U5_4127A; Homo sapiens; RNA-Seq
Sample: SRS1016838
BioProject: PRJNA291458
BioSample: SAMN03944527
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: Primary Fibroblast
cell type: Primary Fibroblast
expression_construct: TOE1F148Y/F148Y
target_gene: U5
r1_inline_randommer: NNNNNNNNNNNCT
Original files (1)
Primary Fibroblast
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134567 16327 1815398 0.9 Sample94_Expt8_PATFIB_U5_4127A.fastq.gz, SRR2134567, SRR2134567.srali… SRA
SRX1124522 SRP061801 RNA-Seq SINGLE
GSM1836583: Expt8_PATFIB_U5_4128A; Homo sapiens; RNA-Seq
Sample: SRS1016836
BioProject: PRJNA291458
BioSample: SAMN03944528
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: Primary Fibroblast
cell type: Primary Fibroblast
expression_construct: TOE1A103T/A103T
target_gene: U5
r1_inline_randommer: NNNNNNNNNNNCT
Original files (1)
Primary Fibroblast
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134568 23880 2660388 1.29 Sample95_Expt8_PATFIB_U5_4128A.fastq.gz, SRR2134568, SRR2134568.srali… SRA
SRX1124523 SRP061801 RNA-Seq SINGLE
GSM1836584: Expt8_PATFIB_U5_4128U; Homo sapiens; RNA-Seq
Sample: SRS1016837
BioProject: PRJNA291458
BioSample: SAMN03944529
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: Primary Fibroblast
cell type: Primary Fibroblast
expression_construct: TOE1WT/A103T
target_gene: U5
r1_inline_randommer: NNNNNNNNNNNCT
Original files (1)
Primary Fibroblast
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134569 16101 1774882 0.89 Sample96_Expt8_PATFIB_U5_4128U.fastq.gz, SRR2134569, SRR2134569.srali… SRA
SRX1124524 SRP061801 RNA-Seq SINGLE
GSM1836585: Expt2_FU5-09_siLuc_totalrip35; Homo sapiens; RNA-Seq
Sample: SRS1016835
BioProject: PRJNA291458
BioSample: SAMN03944530
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: HEK 293
cell line: HEK 293
sirna: siControl
expression_construct: FLAG
target_gene: U5
experimental_condition: FLAGonly-siLuc
r1_inline_randommer: NNNNNNNNNNCT
Original files (1)
HEK 293
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134570 54013 5860605 2.8 Sample97_Expt2_FU5-09_siLuc_totalrip35.fastq.gz, SRR2134570, SRR21345… SRA
SRX1124525 SRP061801 RNA-Seq SINGLE
GSM1836586: Expt2_FU5-10_siCaf_totalrip35; Homo sapiens; RNA-Seq
Sample: SRS1016833
BioProject: PRJNA291458
BioSample: SAMN03944531
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: HEK 293
cell line: HEK 293
sirna: siTOE1
expression_construct: FLAG
target_gene: U5
experimental_condition: FLAGonly-siCaf1z
r1_inline_randommer: NNNNNNNNNNNCT
Original files (1)
HEK 293
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134571 51135 5638043 2.7 Sample98_Expt2_FU5-10_siCaf_totalrip35.fastq.gz, SRR2134571, SRR21345… SRA
SRX1124526 SRP061801 RNA-Seq SINGLE
GSM1836587: Expt3_input-U6-FLAGonly-siLuc; Homo sapiens; RNA-Seq
Sample: SRS1016834
BioProject: PRJNA291458
BioSample: SAMN03944532
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: HEK 293
cell line: HEK 293
sirna: siControl
expression_construct: FLAG
target_gene: U6
experimental_condition: FLAGonly-siLuc
r1_inline_randommer: NNNNNNNNNNCT
Original files (1)
HEK 293
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134572 17137 1654810 0.87 Sample99_Expt3_input-U6-FLAGonly-siLuc.fastq.gz, SRR2134572, SRR21345… SRA
SRX1124527 SRP061801 RNA-Seq SINGLE
GSM1836588: Expt3_input-U6-FLAGonly-siCaf1z; Homo sapiens; RNA-Seq
Sample: SRS1016832
BioProject: PRJNA291458
BioSample: SAMN03944533
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: HEK 293
cell line: HEK 293
sirna: siTOE1
expression_construct: FLAG
target_gene: U6
experimental_condition: FLAGonly-siCaf1z
r1_inline_randommer: NNNNNNNNNNCT
Original files (1)
HEK 293
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134573 17641 1705707 0.89 Sample100_Expt3_input-U6-FLAGonly-siCaf1z.fastq.gz, SRR2134573, SRR21… SRA
SRX1124528 SRP061801 RNA-Seq SINGLE
GSM1836589: Expt3_input-U6-WTaddback-siCaf1z; Homo sapiens; RNA-Seq
Sample: SRS1016831
BioProject: PRJNA291458
BioSample: SAMN03944534
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: HEK 293
cell line: HEK 293
sirna: siTOE1
expression_construct: FLAG-TOE1WT
target_gene: U6
experimental_condition: WTaddback-siCaf1z
r1_inline_randommer: NNNNNNNNNNNCT
Original files (1)
HEK 293
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134574 16468 1586653 0.84 Sample101_Expt3_input-U6-WTaddback-siCaf1z.fastq.gz, SRR2134574, SRR2… SRA
SRX1124529 SRP061801 RNA-Seq SINGLE
GSM1836590: Expt3_input-U6-DEaddback-siCaf1z; Homo sapiens; RNA-Seq
Sample: SRS1016830
BioProject: PRJNA291458
BioSample: SAMN03944535
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: HEK 293
cell line: HEK 293
sirna: siTOE1
expression_construct: FLAG-TOE1DE
target_gene: U6
experimental_condition: DEaddback-siCaf1z
r1_inline_randommer: NNNNNNNNNNNCT
Original files (1)
HEK 293
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134575 41685 4026781 2.0 Sample102_Expt3_input-U6-DEaddback-siCaf1z.fastq.gz, SRR2134575, SRR2… SRA
SRX1124530 SRP061801 RIP-Seq SINGLE
GSM1836591: Expt3_elu-U6-DEaddback; Homo sapiens; RIP-Seq
Sample: SRS1016828
BioProject: PRJNA291458
BioSample: SAMN03944536
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: HEK 293
cell line: HEK 293
sirna: siTOE1
expression_construct: FLAG-TOE1DE
target_gene: U6
rip antibody: Mouse anti-FLAG (Sigma)
experimental_condition: DEaddback
r1_inline_randommer: NNNNNNNNNNNCT
Original files (1)
HEK 293
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134576 19274 1440656 0.86 Sample103_Expt3_elu-U6-DEaddback.fastq.gz, SRR2134576, SRR2134576.sra… SRA
SRX1124531 SRP061801 RNA-Seq SINGLE
GSM1836592: Expt4_input-U6-FLAGonly-siLuc; Homo sapiens; RNA-Seq
Sample: SRS1016827
BioProject: PRJNA291458
BioSample: SAMN03944537
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: HEK 293
cell line: HEK 293
sirna: siControl
expression_construct: FLAG
target_gene: U6
experimental_condition: FLAGonly-siLuc
r1_inline_randommer: NNNNNNNNNNCT
Original files (1)
HEK 293
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134577 22051 2140587 1.1 Sample104_Expt4_input-U6-FLAGonly-siLuc.fastq.gz, SRR2134577, SRR2134… SRA
SRX1124532 SRP061801 RNA-Seq SINGLE
GSM1836593: Expt4_input-U6-FLAGonly-siCaf1z; Homo sapiens; RNA-Seq
Sample: SRS1016829
BioProject: PRJNA291458
BioSample: SAMN03944538
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: HEK 293
cell line: HEK 293
sirna: siTOE1
expression_construct: FLAG
target_gene: U6
experimental_condition: FLAGonly-siCaf1z
r1_inline_randommer: NNNNNNNNNNCT
Original files (1)
HEK 293
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134578 19437 1877634 0.98 Sample105_Expt4_input-U6-FLAGonly-siCaf1z.fastq.gz, SRR2134578, SRR21… SRA
SRX1124533 SRP061801 RNA-Seq SINGLE
GSM1836594: Expt4_input-U6-WTaddback-siCaf1z; Homo sapiens; RNA-Seq
Sample: SRS1016825
BioProject: PRJNA291458
BioSample: SAMN03944539
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: HEK 293
cell line: HEK 293
sirna: siTOE1
expression_construct: FLAG-TOE1WT
target_gene: U6
experimental_condition: WTaddback-siCaf1z
r1_inline_randommer: NNNNNNNNNNNCT
Original files (1)
HEK 293
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134579 21992 2140630 1.1 Sample106_Expt4_input-U6-WTaddback-siCaf1z.fastq.gz, SRR2134579, SRR2… SRA
SRX1124534 SRP061801 RNA-Seq SINGLE
GSM1836595: Expt4_input-U6-DEaddback-siCaf1z; Homo sapiens; RNA-Seq
Sample: SRS1016826
BioProject: PRJNA291458
BioSample: SAMN03944540
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: HEK 293
cell line: HEK 293
sirna: siTOE1
expression_construct: FLAG-TOE1DE
target_gene: U6
experimental_condition: DEaddback-siCaf1z
r1_inline_randommer: NNNNNNNNNNNCT
Original files (1)
HEK 293
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134580 19220 1859828 0.97 Sample107_Expt4_input-U6-DEaddback-siCaf1z.fastq.gz, SRR2134580, SRR2… SRA
SRX1124535 SRP061801 RIP-Seq SINGLE
GSM1836596: Expt4_elu-U6-Wtaddback; Homo sapiens; RIP-Seq
Sample: SRS1016824
BioProject: PRJNA291458
BioSample: SAMN03944541
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: HEK 293
cell line: HEK 293
sirna: siTOE1
expression_construct: FLAG-TOE1WT
target_gene: U6
rip antibody: Mouse anti-FLAG (Sigma)
experimental_condition: WTaddback
r1_inline_randommer: NNNNNNNNNNCT
Original files (1)
HEK 293
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134581 53432 3690065 2.18 Sample108_Expt4_elu-U6-Wtaddback.fastq.gz, SRR2134581, SRR2134581.sra… SRA
SRX1124536 SRP061801 RIP-Seq SINGLE
GSM1836597: Expt4_elu-U6-DEaddback; Homo sapiens; RIP-Seq
Sample: SRS1016823
BioProject: PRJNA291458
BioSample: SAMN03944542
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: HEK 293
cell line: HEK 293
sirna: siTOE1
expression_construct: FLAG-TOE1DE
target_gene: U6
rip antibody: Mouse anti-FLAG (Sigma)
experimental_condition: DEaddback
r1_inline_randommer: NNNNNNNNNNCT
Original files (1)
HEK 293
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134582 4388 327146 0.25 Sample109_Expt4_elu-U6-DEaddback.fastq.gz, SRR2134582, SRR2134582.sra… SRA
SRX1124537 SRP061801 RNA-Seq SINGLE
GSM1836598: Expt4_FU4-01_siLUCtot_rip41; Homo sapiens; RNA-Seq
Sample: SRS1016822
BioProject: PRJNA291458
BioSample: SAMN03944543
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: HEK 293
cell line: HEK 293
sirna: siControl
expression_construct: FLAG
target_gene: U4
experimental_condition: FLAGonly-siLuc
r1_inline_randommer: NNNNNNNNNNCT
Original files (1)
HEK 293
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134583 20281 2473522 1.46 Sample110_Expt4_FU4-01_siLUCtot_rip41.fastq.gz, SRR2134583, SRR213458… SRA
SRX1124538 SRP061801 RNA-Seq SINGLE
GSM1836599: Expt4_FU4-02_siCaf1ztot_rip41; Homo sapiens; RNA-Seq
Sample: SRS1016821
BioProject: PRJNA291458
BioSample: SAMN03944544
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: HEK 293
cell line: HEK 293
sirna: siTOE1
expression_construct: FLAG
target_gene: U4
experimental_condition: FLAGonly-siCaf1z
r1_inline_randommer: NNNNNNNNNNCT
Original files (1)
HEK 293
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134584 26019 3179733 1.86 Sample111_Expt4_FU4-02_siCaf1ztot_rip41.fastq.gz, SRR2134584, SRR2134… SRA
SRX1124539 SRP061801 RNA-Seq SINGLE
GSM1836600: Expt4_FU4-03_WTtot_rip41; Homo sapiens; RNA-Seq
Sample: SRS1016820
BioProject: PRJNA291458
BioSample: SAMN03944545
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: HEK 293
cell line: HEK 293
sirna: siTOE1
expression_construct: FLAG-TOE1WT
target_gene: U4
experimental_condition: WTaddback-siCaf1z
r1_inline_randommer: NNNNNNNNNNNCT
Original files (1)
HEK 293
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134585 26149 3214866 1.87 Sample112_Expt4_FU4-03_WTtot_rip41.fastq.gz, SRR2134585, SRR2134585.s… SRA
SRX1124540 SRP061801 RNA-Seq SINGLE
GSM1836601: Expt4_FU4-04_DEtot_rip41; Homo sapiens; RNA-Seq
Sample: SRS1016819
BioProject: PRJNA291458
BioSample: SAMN03944546
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: HEK 293
cell line: HEK 293
sirna: siTOE1
expression_construct: FLAG-TOE1DE
target_gene: U4
experimental_condition: DEaddback-siCaf1z
r1_inline_randommer: NNNNNNNNNNNCT
Original files (1)
HEK 293
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134586 22160 2732257 1.62 Sample113_Expt4_FU4-04_DEtot_rip41.fastq.gz, SRR2134586, SRR2134586.s… SRA
SRX1124541 SRP061801 RIP-Seq SINGLE
GSM1836602: Expt4_FU4-05_WTrip_rip41; Homo sapiens; RIP-Seq
Sample: SRS1016818
BioProject: PRJNA291458
BioSample: SAMN03944547
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: HEK 293
cell line: HEK 293
sirna: siTOE1
expression_construct: FLAG-TOE1WT
target_gene: U4
rip antibody: Mouse anti-FLAG (Sigma)
experimental_condition: WTaddback
r1_inline_randommer: NNNNNNNNNNCT
Original files (1)
HEK 293
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134587 86439 6914215 4.1 Sample114_Expt4_FU4-05_WTrip_rip41.fastq.gz, SRR2134587, SRR2134587.s… SRA
SRX1124542 SRP061801 RIP-Seq SINGLE
GSM1836603: Expt4_FU4-06_DErip_rip41; Homo sapiens; RIP-Seq
Sample: SRS1016817
BioProject: PRJNA291458
BioSample: SAMN03944548
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: HEK 293
cell line: HEK 293
sirna: siTOE1
expression_construct: FLAG-TOE1DE
target_gene: U4
rip antibody: Mouse anti-FLAG (Sigma)
experimental_condition: DEaddback
r1_inline_randommer: NNNNNNNNNNCT
Original files (1)
HEK 293
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134588 50171 4774926 2.83 Sample115_Expt4_FU4-06_DErip_rip41.fastq.gz, SRR2134588, SRR2134588.s… SRA
SRX1124543 SRP061801 RNA-Seq SINGLE
GSM1836604: Expt6_FU1-Vs-09_siL_tot_42; Homo sapiens; RNA-Seq
Sample: SRS1016816
BioProject: PRJNA291458
BioSample: SAMN03944549
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: HEK 293
cell line: HEK 293
sirna: siControl
expression_construct: FLAG
target_gene: U1
experimental_condition: FLAGonly-siLuc
r1_inline_randommer: NNNNNNNNNNCT
Original files (1)
HEK 293
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134589 25756 3332441 1.53 Sample116_Expt6_FU1-Vs-09_siL_tot_42.fastq.gz, SRR2134589, SRR2134589… SRA
SRX1124544 SRP061801 RNA-Seq SINGLE
GSM1836605: Expt6_FU1-Vs-10_siC_tot_42; Homo sapiens; RNA-Seq
Sample: SRS1016815
BioProject: PRJNA291458
BioSample: SAMN03944550
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: HEK 293
cell line: HEK 293
sirna: siTOE1
expression_construct: FLAG
target_gene: U1
experimental_condition: FLAGonly-siCaf1z
r1_inline_randommer: NNNNNNNNNNCT
Original files (1)
HEK 293
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134590 30031 3897851 1.82 Sample117_Expt6_FU1-Vs-10_siC_tot_42.fastq.gz, SRR2134590, SRR2134590… SRA
SRX1124545 SRP061801 RNA-Seq SINGLE
GSM1836606: Expt6_FU1-Vs-11_WT_tot_42; Homo sapiens; RNA-Seq
Sample: SRS1016814
BioProject: PRJNA291458
BioSample: SAMN03944551
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: HEK 293
cell line: HEK 293
sirna: siTOE1
expression_construct: FLAG-TOE1WT
target_gene: U1
experimental_condition: WTaddback-siCaf1z
r1_inline_randommer: NNNNNNNNNNNCT
Original files (1)
HEK 293
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134591 26613 3462687 1.6 Sample118_Expt6_FU1-Vs-11_WT_tot_42.fastq.gz, SRR2134591, SRR2134591.… SRA
SRX1124546 SRP061801 RNA-Seq SINGLE
GSM1836607: Expt6_FU1-Vs-12_DE_tot_42; Homo sapiens; RNA-Seq
Sample: SRS1016813
BioProject: PRJNA291458
BioSample: SAMN03944456
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: HEK 293
cell line: HEK 293
sirna: siTOE1
expression_construct: FLAG-TOE1DE
target_gene: U1
experimental_condition: DEaddback-siCaf1z
r1_inline_randommer: NNNNNNNNNNNCT
Original files (1)
HEK 293
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134592 30973 4051152 1.92 Sample119_Expt6_FU1-Vs-12_DE_tot_42.fastq.gz, SRR2134592, SRR2134592.… SRA
SRX1124547 SRP061801 RIP-Seq SINGLE
GSM1836608: Expt6_FU1-Vs-01_WT_el_42_trizol; Homo sapiens; RIP-Seq
Sample: SRS1016812
BioProject: PRJNA291458
BioSample: SAMN03944457
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: HEK 293
cell line: HEK 293
sirna: siTOE1
expression_construct: FLAG-TOE1WT
target_gene: U1
rip antibody: Mouse anti-FLAG (Sigma)
experimental_condition: WTaddback
r1_inline_randommer: NNNNNNNNNNNCT
Original files (1)
HEK 293
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134593 20047 2691709 1.36 Sample120_Expt6_FU1-Vs-01_WT_el_42_trizol.fastq.gz, SRR2134593, SRR21… SRA
SRX1124548 SRP061801 RIP-Seq SINGLE
GSM1836609: Expt6_FU1-Vs-02_WT_el_42_Mg; Homo sapiens; RIP-Seq
Sample: SRS1016811
BioProject: PRJNA291458
BioSample: SAMN03944458
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: HEK 293
cell line: HEK 293
sirna: siTOE1
expression_construct: FLAG-TOE1WT
target_gene: U1
rip antibody: Mouse anti-FLAG (Sigma)
experimental_condition: WTaddback
r1_inline_randommer: NNNNNNNNNNCT
Original files (1)
HEK 293
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134594 18440 2408534 1.17 Sample121_Expt6_FU1-Vs-02_WT_el_42_Mg.fastq.gz, SRR2134594, SRR213459… SRA
SRX1124549 SRP061801 RIP-Seq SINGLE
GSM1836610: Expt6_FU1-Vs-03_WT_el_42_EDTA; Homo sapiens; RIP-Seq
Sample: SRS1016810
BioProject: PRJNA291458
BioSample: SAMN03944459
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: HEK 293
cell line: HEK 293
sirna: siTOE1
expression_construct: FLAG-TOE1WT
target_gene: U1
rip antibody: Mouse anti-FLAG (Sigma)
experimental_condition: WTaddback
r1_inline_randommer: NNNNNNNNNNCT
Original files (1)
HEK 293
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134595 6027 804080 0.46 Sample122_Expt6_FU1-Vs-03_WT_el_42_EDTA.fastq.gz, SRR2134595, SRR2134… SRA
SRX1124550 SRP061801 RIP-Seq SINGLE
GSM1836611: Expt6_FU1-Vs-04_DE_el_42_trizol; Homo sapiens; RIP-Seq
Sample: SRS1016809
BioProject: PRJNA291458
BioSample: SAMN03944460
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: HEK 293
cell line: HEK 293
sirna: siTOE1
expression_construct: FLAG-TOE1DE
target_gene: U1
rip antibody: Mouse anti-FLAG (Sigma)
experimental_condition: DEaddback
r1_inline_randommer: NNNNNNNNNNNCT
Original files (1)
HEK 293
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134596 16223 2221691 1.14 Sample123_Expt6_FU1-Vs-04_DE_el_42_trizol.fastq.gz, SRR2134596, SRR21… SRA
SRX1124551 SRP061801 RIP-Seq SINGLE
GSM1836612: Expt6_FU1-Vs-05_DE_el__42_Mg; Homo sapiens; RIP-Seq
Sample: SRS1016808
BioProject: PRJNA291458
BioSample: SAMN03944461
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: HEK 293
cell line: HEK 293
sirna: siTOE1
expression_construct: FLAG-TOE1DE
target_gene: U1
rip antibody: Mouse anti-FLAG (Sigma)
experimental_condition: DEaddback
r1_inline_randommer: NNNNNNNNNNCT
Original files (1)
HEK 293
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134597 18358 2494062 1.25 Sample124_Expt6_FU1-Vs-05_DE_el__42_Mg.fastq.gz, SRR2134597, SRR21345… SRA
SRX1124552 SRP061801 RIP-Seq SINGLE
GSM1836613: Expt6_FU1-Vs-06_DE_el__42_EDTA; Homo sapiens; RIP-Seq
Sample: SRS1016807
BioProject: PRJNA291458
BioSample: SAMN03944462
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: HEK 293
cell line: HEK 293
sirna: siTOE1
expression_construct: FLAG-TOE1DE
target_gene: U1
rip antibody: Mouse anti-FLAG (Sigma)
experimental_condition: DEaddback
r1_inline_randommer: NNNNNNNNNNCT
Original files (1)
HEK 293
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134598 21574 2935743 1.46 Sample125_Expt6_FU1-Vs-06_DE_el__42_EDTA.fastq.gz, SRR2134598, SRR213… SRA
SRX1124553 SRP061801 RNA-Seq SINGLE
GSM1836614: Expt7_FU1-Vs-20_siL_tot_40; Homo sapiens; RNA-Seq
Sample: SRS1016806
BioProject: PRJNA291458
BioSample: SAMN03944463
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: HEK 293
cell line: HEK 293
sirna: siControl
expression_construct: FLAG
target_gene: U1
experimental_condition: FLAGonly_siLuc
r1_inline_randommer: NNNNNNNNNNCT
Original files (1)
HEK 293
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134599 22656 2951262 1.35 Sample126_Expt7_FU1-Vs-20_siL_tot_40.fastq.gz, SRR2134599, SRR2134599… SRA
SRX1124554 SRP061801 RNA-Seq SINGLE
GSM1836615: Expt7_FU1-Vs-21_siC_tot_40; Homo sapiens; RNA-Seq
Sample: SRS1016805
BioProject: PRJNA291458
BioSample: SAMN03944464
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: HEK 293
cell line: HEK 293
sirna: siTOE1
expression_construct: FLAG
target_gene: U1
experimental_condition: FLAGonly-siCaf1z
r1_inline_randommer: NNNNNNNNNNCT
Original files (1)
HEK 293
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134600 21430 2791917 1.31 Sample127_Expt7_FU1-Vs-21_siC_tot_40.fastq.gz, SRR2134600, SRR2134600… SRA
SRX1124555 SRP061801 RNA-Seq SINGLE
GSM1836616: Expt7_FU1-Vs-22_WT_tot_40; Homo sapiens; RNA-Seq
Sample: SRS1016804
BioProject: PRJNA291458
BioSample: SAMN03944465
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: HEK 293
cell line: HEK 293
sirna: siTOE1
expression_construct: FLAG-TOE1WT
target_gene: U1
experimental_condition: WTaddback-siCaf1z
r1_inline_randommer: NNNNNNNNNNNCT
Original files (1)
HEK 293
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134601 19829 2604164 1.21 Sample128_Expt7_FU1-Vs-22_WT_tot_40.fastq.gz, SRR2134601, SRR2134601.… SRA
SRX1124556 SRP061801 RNA-Seq SINGLE
GSM1836617: Expt7_FU1-Vs-07_DE_tot_40; Homo sapiens; RNA-Seq
Sample: SRS1016803
BioProject: PRJNA291458
BioSample: SAMN03944466
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: HEK 293
cell line: HEK 293
sirna: siTOE1
expression_construct: FLAG-TOE1DE
target_gene: U1
experimental_condition: DEaddback-siCaf1z
r1_inline_randommer: NNNNNNNNNNNCT
Original files (1)
HEK 293
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134602 19746 2601357 1.23 Sample129_Expt7_FU1-Vs-07_DE_tot_40.fastq.gz, SRR2134602, SRR2134602.… SRA
SRX1124557 SRP061801 RNA-Seq SINGLE
GSM1836618: Expt7_FU1-Vs-13_A103_tot_40; Homo sapiens; RNA-Seq
Sample: SRS1016802
BioProject: PRJNA291458
BioSample: SAMN03944467
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: HEK 293
cell line: HEK 293
sirna: siTOE1
expression_construct: FLAG-TOE1A103T
target_gene: U1
experimental_condition: A103 addback - siCaf1z
r1_inline_randommer: NNNNNNNNNNCT
Original files (1)
HEK 293
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134603 23180 3031492 1.41 Sample130_Expt7_FU1-Vs-13_A103_tot_40.fastq.gz, SRR2134603, SRR213460… SRA
SRX1124558 SRP061801 RNA-Seq SINGLE
GSM1836619: Expt7_FU1-Vs-14_F148_tot_40; Homo sapiens; RNA-Seq
Sample: SRS1016801
BioProject: PRJNA291458
BioSample: SAMN03944468
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: HEK 293
cell line: HEK 293
sirna: siTOE1
expression_construct: FLAG-TOE1F148Y
target_gene: U1
experimental_condition: F148 addback- siCaf1z
r1_inline_randommer: NNNNNNNNNNCT
Original files (1)
HEK 293
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134604 21824 2855774 1.32 Sample131_Expt7_FU1-Vs-14_F148_tot_40.fastq.gz, SRR2134604, SRR213460… SRA
SRX1124559 SRP061801 RNA-Seq SINGLE
GSM1836620: Expt7_FU1-Vs-15_V173_tot_40; Homo sapiens; RNA-Seq
Sample: SRS1016800
BioProject: PRJNA291458
BioSample: SAMN03944469
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: HEK 293
cell line: HEK 293
sirna: siTOE1
expression_construct: FLAG-TOE1V173G
target_gene: U1
experimental_condition: V173 addback- siCaf1z
r1_inline_randommer: NNNNNNNNNNNCT
Original files (1)
HEK 293
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134605 17043 2245424 1.06 Sample132_Expt7_FU1-Vs-15_V173_tot_40.fastq.gz, SRR2134605, SRR213460… SRA
SRX1124560 SRP061801 RNA-Seq SINGLE
GSM1836621: Expt7_FU1-Vs-16_E220_tot_40; Homo sapiens; RNA-Seq
Sample: SRS1016799
BioProject: PRJNA291458
BioSample: SAMN03944470
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: HEK 293
cell line: HEK 293
sirna: siTOE1
expression_construct: FLAG-TOE1E220K
target_gene: U1
experimental_condition: E220 addback- siCaf1z
r1_inline_randommer: NNNNNNNNNNNCT
Original files (1)
HEK 293
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134606 15069 1987355 0.94 Sample133_Expt7_FU1-Vs-16_E220_tot_40.fastq.gz, SRR2134606, SRR213460… SRA
SRX1124561 SRP061801 RNA-Seq SINGLE
GSM1836622: Expt9_FU1V68-01_NPC__ATCC; Homo sapiens; RNA-Seq
Sample: SRS1016798
BioProject: PRJNA291458
BioSample: SAMN03944471
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: NPC derived from primary fibroblasts
cell type: NPC derived from primary fibroblasts
expression_construct: TOE1WT
target_gene: U1
r1_inline_randommer: NNNNNNNNNNCT
Original files (1)
NPC derived from primary fibroblasts
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134607 22779 1466866 0.74 Sample134_Expt9_FU1V68-01_NPC__ATCC.fastq.gz, SRR2134607, SRR2134607.… SRA
SRX1124562 SRP061801 RNA-Seq SINGLE
GSM1836623: Expt9_FU1V68-02_NPC_1603A1; Homo sapiens; RNA-Seq
Sample: SRS1016797
BioProject: PRJNA291458
BioSample: SAMN03944472
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: NPC derived from primary fibroblasts
cell type: NPC derived from primary fibroblasts
expression_construct: TOE1E220K/E220K
target_gene: U1
r1_inline_randommer: NNNNNNNNNNCT
Original files (1)
NPC derived from primary fibroblasts
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134608 26802 1761193 0.91 Sample135_Expt9_FU1V68-02_NPC_1603A1.fastq.gz, SRR2134608, SRR2134608… SRA
SRX1124563 SRP061801 RNA-Seq SINGLE
GSM1836624: Expt9_FU1V68-03_NPC_1603A3; Homo sapiens; RNA-Seq
Sample: SRS1016796
BioProject: PRJNA291458
BioSample: SAMN03944473
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: NPC derived from primary fibroblasts
cell type: NPC derived from primary fibroblasts
expression_construct: TOE1E220K/E220K
target_gene: U1
r1_inline_randommer: NNNNNNNNNNNCT
Original files (1)
NPC derived from primary fibroblasts
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134609 21155 1408818 0.75 Sample136_Expt9_FU1V68-03_NPC_1603A3.fastq.gz, SRR2134609, SRR2134609… SRA
SRX1124564 SRP061801 RNA-Seq SINGLE
GSM1836625: Expt9_FU1V68-04_NPC_1603U3; Homo sapiens; RNA-Seq
Sample: SRS1016795
BioProject: PRJNA291458
BioSample: SAMN03944474
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: NPC derived from primary fibroblasts
cell type: NPC derived from primary fibroblasts
expression_construct: TOE1WT/E220K
target_gene: U1
r1_inline_randommer: NNNNNNNNNNNCT
Original files (1)
NPC derived from primary fibroblasts
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134610 26152 1712267 0.87 Sample137_Expt9_FU1V68-04_NPC_1603U3.fastq.gz, SRR2134610, SRR2134610… SRA
SRX1124565 SRP061801 RNA-Seq SINGLE
GSM1836626: Expt9_FU1V68-05_NPC_1603U4; Homo sapiens; RNA-Seq
Sample: SRS1016778
BioProject: PRJNA291458
BioSample: SAMN03944475
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: NPC derived from primary fibroblasts
cell type: NPC derived from primary fibroblasts
expression_construct: TOE1WT/E220K
target_gene: U1
r1_inline_randommer: NNNNNNNNNNCT
Original files (1)
NPC derived from primary fibroblasts
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134611 21196 1365418 0.7 Sample138_Expt9_FU1V68-05_NPC_1603U4.fastq.gz, SRR2134611, SRR2134611… SRA
SRX1124566 SRP061801 RNA-Seq SINGLE
GSM1836627: Expt9_FU2-01_NPC__ATCC; Homo sapiens; RNA-Seq
Sample: SRS1016794
BioProject: PRJNA291458
BioSample: SAMN03944476
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: NPC derived from primary fibroblasts
cell type: NPC derived from primary fibroblasts
expression_construct: TOE1WT
target_gene: U2
r1_inline_randommer: NNNNNNNNNNCT
Original files (1)
NPC derived from primary fibroblasts
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134612 23947 1652733 0.92 Sample139_Expt9_FU2-01_NPC__ATCC.fastq.gz, SRR2134612, SRR2134612.sra… SRA
SRX1124567 SRP061801 RNA-Seq SINGLE
GSM1836628: Expt9_FU2-02_NPC_1603A1; Homo sapiens; RNA-Seq
Sample: SRS1016793
BioProject: PRJNA291458
BioSample: SAMN03944477
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: NPC derived from primary fibroblasts
cell type: NPC derived from primary fibroblasts
expression_construct: TOE1E220K/E220K
target_gene: U2
r1_inline_randommer: NNNNNNNNNNCT
Original files (1)
NPC derived from primary fibroblasts
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134613 19613 1350072 0.77 Sample140_Expt9_FU2-02_NPC_1603A1.fastq.gz, SRR2134613, SRR2134613.sr… SRA
SRX1124568 SRP061801 RNA-Seq SINGLE
GSM1836629: Expt9_FU2-03_NPC_1603A3; Homo sapiens; RNA-Seq
Sample: SRS1016792
BioProject: PRJNA291458
BioSample: SAMN03944478
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: NPC derived from primary fibroblasts
cell type: NPC derived from primary fibroblasts
expression_construct: TOE1E220K/E220K
target_gene: U2
r1_inline_randommer: NNNNNNNNNNNCT
Original files (1)
NPC derived from primary fibroblasts
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134614 19108 1328274 0.75 Sample141_Expt9_FU2-03_NPC_1603A3.fastq.gz, SRR2134614, SRR2134614.sr… SRA
SRX1124569 SRP061801 RNA-Seq SINGLE
GSM1836630: Expt9_FU2-04_NPC_1603U3; Homo sapiens; RNA-Seq
Sample: SRS1016791
BioProject: PRJNA291458
BioSample: SAMN03944479
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: NPC derived from primary fibroblasts
cell type: NPC derived from primary fibroblasts
expression_construct: TOE1WT/E220K
target_gene: U2
r1_inline_randommer: NNNNNNNNNNNCT
Original files (1)
NPC derived from primary fibroblasts
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134615 23250 1610122 0.89 Sample142_Expt9_FU2-04_NPC_1603U3.fastq.gz, SRR2134615, SRR2134615.sr… SRA
SRX1124570 SRP061801 RNA-Seq SINGLE
GSM1836631: Expt9_FU2-05_NPC_1603U4; Homo sapiens; RNA-Seq
Sample: SRS1016790
BioProject: PRJNA291458
BioSample: SAMN03944480
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: NPC derived from primary fibroblasts
cell type: NPC derived from primary fibroblasts
expression_construct: TOE1WT/E220K
target_gene: U2
r1_inline_randommer: NNNNNNNNNNCT
Original files (1)
NPC derived from primary fibroblasts
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134616 16336 1114796 0.64 Sample143_Expt9_FU2-05_NPC_1603U4.fastq.gz, SRR2134616, SRR2134616.sr… SRA
SRX1124571 SRP061801 RNA-Seq SINGLE
GSM1836632: Expt9_FU5-03_NPC__ATCC; Homo sapiens; RNA-Seq
Sample: SRS1016789
BioProject: PRJNA291458
BioSample: SAMN03944481
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: NPC derived from primary fibroblasts
cell type: NPC derived from primary fibroblasts
expression_construct: TOE1WT
target_gene: U5
r1_inline_randommer: NNNNNNNNNNCT
Original files (1)
NPC derived from primary fibroblasts
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134617 27431 3001352 1.41 Sample144_Expt9_FU5-03_NPC__ATCC.fastq.gz, SRR2134617, SRR2134617.sra… SRA
SRX1124572 SRP061801 RNA-Seq SINGLE
GSM1836633: Expt9_FU5-04_NPC_1603A1; Homo sapiens; RNA-Seq
Sample: SRS1016788
BioProject: PRJNA291458
BioSample: SAMN03944482
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: NPC derived from primary fibroblasts
cell type: NPC derived from primary fibroblasts
expression_construct: TOE1E220K/E220K
target_gene: U5
r1_inline_randommer: NNNNNNNNNNCT
Original files (1)
NPC derived from primary fibroblasts
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134618 23764 2627813 1.23 Sample145_Expt9_FU5-04_NPC_1603A1.fastq.gz, SRR2134618, SRR2134618.sr… SRA
SRX1124573 SRP061801 RNA-Seq SINGLE
GSM1836634: Expt9_FU5-05_NPC_1603A3; Homo sapiens; RNA-Seq
Sample: SRS1016787
BioProject: PRJNA291458
BioSample: SAMN03944483
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: NPC derived from primary fibroblasts
cell type: NPC derived from primary fibroblasts
expression_construct: TOE1E220K/E220K
target_gene: U5
r1_inline_randommer: NNNNNNNNNNNCT
Original files (1)
NPC derived from primary fibroblasts
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134619 30687 3420051 1.58 Sample146_Expt9_FU5-05_NPC_1603A3.fastq.gz, SRR2134619, SRR2134619.sr… SRA
SRX1124574 SRP061801 RNA-Seq SINGLE
GSM1836635: Expt9_FU5-06_NPC_1603U3; Homo sapiens; RNA-Seq
Sample: SRS1016786
BioProject: PRJNA291458
BioSample: SAMN03944518
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: NPC derived from primary fibroblasts
cell type: NPC derived from primary fibroblasts
expression_construct: TOE1WT/E220K
target_gene: U5
r1_inline_randommer: NNNNNNNNNNNCT
Original files (1)
NPC derived from primary fibroblasts
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134620 26203 2908573 1.35 Sample147_Expt9_FU5-06_NPC_1603U3.fastq.gz, SRR2134620, SRR2134620.sr… SRA
SRX1124575 SRP061801 RNA-Seq SINGLE
GSM1836636: Expt9_FU5-07_NPC_1603U4; Homo sapiens; RNA-Seq
Sample: SRS1016785
BioProject: PRJNA291458
BioSample: SAMN03944519
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: NPC derived from primary fibroblasts
cell type: NPC derived from primary fibroblasts
expression_construct: TOE1WT/E220K
target_gene: U5
r1_inline_randommer: NNNNNNNNNNCT
Original files (1)
NPC derived from primary fibroblasts
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134621 27380 3010593 1.39 Sample148_Expt9_FU5-07_NPC_1603U4.fastq.gz, SRR2134621, SRR2134621.sr… SRA
SRX1124576 SRP061801 RNA-Seq SINGLE
GSM1836637: Expt4_FU5-08_siLuc_tot_41; Homo sapiens; RNA-Seq
Sample: SRS1016784
BioProject: PRJNA291458
BioSample: SAMN03944520
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: HEK 293
cell line: HEK 293
sirna: siControl
expression_construct: FLAG
target_gene: U5
experimental_condition: FLAGonly-siLuc
r1_inline_randommer: NNNNNNNNNNCT
Original files (1)
HEK 293
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134622 36295 3923932 1.85 Sample149_Expt4_FU5-08_siLuc_tot_41.fastq.gz, SRR2134622, SRR2134622.… SRA
SRX1124577 SRP061801 RNA-Seq SINGLE
GSM1836638: Expt4_FU5-09_siC_tot_41; Homo sapiens; RNA-Seq
Sample: SRS1016783
BioProject: PRJNA291458
BioSample: SAMN03944521
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: HEK 293
cell line: HEK 293
sirna: siTOE1
expression_construct: FLAG
target_gene: U5
experimental_condition: FLAGonly-siCaf1z
r1_inline_randommer: NNNNNNNNNNCT
Original files (1)
HEK 293
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134623 47499 5180885 2.42 Sample150_Expt4_FU5-09_siC_tot_41.fastq.gz, SRR2134623, SRR2134623.sr… SRA
SRX1124578 SRP061801 RNA-Seq SINGLE
GSM1836639: Expt4_FU5-10_WT_tot_41; Homo sapiens; RNA-Seq
Sample: SRS1016782
BioProject: PRJNA291458
BioSample: SAMN03944484
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: HEK 293
cell line: HEK 293
sirna: siTOE1
expression_construct: FLAG-TOE1WT
target_gene: U5
experimental_condition: WTaddback-siCaf1z
r1_inline_randommer: NNNNNNNNNNNCT
Original files (1)
HEK 293
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134624 32050 3512435 1.67 Sample151_Expt4_FU5-10_WT_tot_41.fastq.gz, SRR2134624, SRR2134624.sra… SRA
SRX1124579 SRP061801 RNA-Seq SINGLE
GSM1836640: Expt4_FU5-11_DE_tot_41; Homo sapiens; RNA-Seq
Sample: SRS1016781
BioProject: PRJNA291458
BioSample: SAMN03944485
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: HEK 293
cell line: HEK 293
sirna: siTOE1
expression_construct: FLAG-TOE1DE
target_gene: U5
experimental_condition: DEaddback-siCaf1z
r1_inline_randommer: NNNNNNNNNNNCT
Original files (1)
HEK 293
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134625 28316 3123944 1.49 Sample152_Expt4_FU5-11_DE_tot_41.fastq.gz, SRR2134625, SRR2134625.sra… SRA
SRX1124580 SRP061801 RIP-Seq SINGLE
GSM1836641: Expt4_FU5-12_WT_el_41; Homo sapiens; RIP-Seq
Sample: SRS1016780
BioProject: PRJNA291458
BioSample: SAMN03944516
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: HEK 293
cell line: HEK 293
sirna: siTOE1
expression_construct: FLAG-TOE1WT
target_gene: U5
rip antibody: Mouse anti-FLAG (Sigma)
experimental_condition: WTaddback
r1_inline_randommer: NNNNNNNNNNCT
Original files (1)
HEK 293
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134626 9058 908648 0.51 Sample153_Expt4_FU5-12_WT_el_41.fastq.gz, SRR2134626, SRR2134626.sral… SRA
SRX1124581 SRP061801 RIP-Seq SINGLE
GSM1836642: Expt4_FU5-13_DE_el_41; Homo sapiens; RIP-Seq
Sample: SRS1016779
BioProject: PRJNA291458
BioSample: SAMN03944517
Platform: ILLUMINA
Instrument: Illumina MiSeq
Organism: Homo sapiens
Sample attributes
source_name: HEK 293
cell line: HEK 293
sirna: siTOE1
expression_construct: FLAG-TOE1DE
target_gene: U5
rip antibody: Mouse anti-FLAG (Sigma)
experimental_condition: DEaddback
r1_inline_randommer: NNNNNNNNNNCT
Original files (1)
HEK 293
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2134627 9564 1039317 0.56 Sample154_Expt4_FU5-13_DE_el_41.fastq.gz, SRR2134627, SRR2134627.sral… SRA

Linked Publications (1)

Biallelic mutations in the 3' exonuclease TOE1 cause pontocerebellar hypoplasia and uncover a role in snRNA processing.
Nature genetics · 2017

Potentially Related Publications (1)

This accession was text-mined from the PMC full text of these publications. It may be referenced for comparison or reused from another study rather than generated for them.

Biallelic mutations in the 3' exonuclease TOE1 cause pontocerebellar hypoplasia and uncover a role in snRNA processing.
Nature genetics · 2017

Data Files (308)

Accession File Name Stored Type Output Type Mapping Assembly Size Download
— Sample103_Expt3_elu-U6-DEaddback.fastq.gz RIP-Seq 880.6 KB link
— Sample108_Expt4_elu-U6-Wtaddback.fastq.gz RIP-Seq 2.2 MB link
— Sample109_Expt4_elu-U6-DEaddback.fastq.gz RIP-Seq 256.0 KB link
— Sample114_Expt4_FU4-05_WTrip_rip41.fastq.gz RIP-Seq 4.1 MB link
— Sample115_Expt4_FU4-06_DErip_rip41.fastq.gz RIP-Seq 2.8 MB link
— Sample11_Expt1_elu-U2-WTaddback.fastq.gz RIP-Seq 849.9 KB link
— Sample120_Expt6_FU1-Vs-01_WT_el_42_trizol.fastq.gz RIP-Seq 1.4 MB link
— Sample121_Expt6_FU1-Vs-02_WT_el_42_Mg.fastq.gz RIP-Seq 1.2 MB link
— Sample122_Expt6_FU1-Vs-03_WT_el_42_EDTA.fastq.gz RIP-Seq 471.0 KB link
— Sample123_Expt6_FU1-Vs-04_DE_el_42_trizol.fastq.gz RIP-Seq 1.1 MB link
— Sample124_Expt6_FU1-Vs-05_DE_el__42_Mg.fastq.gz RIP-Seq 1.2 MB link
— Sample125_Expt6_FU1-Vs-06_DE_el__42_EDTA.fastq.gz RIP-Seq 1.5 MB link
— Sample12_Expt1_elu-U2-Deaddback.fastq.gz RIP-Seq 870.4 KB link
— Sample153_Expt4_FU5-12_WT_el_41.fastq.gz RIP-Seq 522.2 KB link
— Sample154_Expt4_FU5-13_DE_el_41.fastq.gz RIP-Seq 573.4 KB link
— Sample17_Expt2_elu-U1-WTaddback.fastq.gz RIP-Seq 286.7 KB link
— Sample18_Expt2_elu-U1-DEaddback.fastq.gz RIP-Seq 245.8 KB link
— Sample23_Expt2_elu-U2-WTaddback.fastq.gz RIP-Seq 266.2 KB link
— Sample24_Expt2_elu-U2-DEaddback.fastq.gz RIP-Seq 286.7 KB link
— Sample29_Expt2_elu-U4-WTaddback.fastq.gz RIP-Seq 553.0 KB link
— Sample30_Expt2_elu-U4-DEaddback.fastq.gz RIP-Seq 532.5 KB link
— Sample33_Expt2_elu-U5-WTaddback.fastq.gz RIP-Seq 419.8 KB link
— Sample34_Expt2_elu-U5-DEaddback.fastq.gz RIP-Seq 378.9 KB link
— Sample39_Expt2_elu-U6-Wtaddback.fastq.gz RIP-Seq 327.7 KB link
— Sample40_Expt2_elu-U6-DEaddback.fastq.gz RIP-Seq 348.2 KB link
— Sample45_Expt3_elu-U1-WTaddback.fastq.gz RIP-Seq 3.1 MB link
— Sample46_Expt3_elu-U1-Deaddback.fastq.gz RIP-Seq 3.6 MB link
— Sample51_Expt3_elu-U2-WTaddback.fastq.gz RIP-Seq 2.4 MB link
— Sample52_Expt3_elu-U2-DEaddback.fastq.gz RIP-Seq 1.7 MB link
— Sample57_Expt3_elu-U4-WTaddback.fastq.gz RIP-Seq 3.9 MB link
— Sample58_Expt3_elu-U4-DEaddback.fastq.gz RIP-Seq 3.8 MB link
— Sample5_Expt1_elu-U1-WTaddback.fastq.gz RIP-Seq 542.7 KB link
— Sample61_Expt3_elu-U5-WTaddback.fastq.gz RIP-Seq 2.5 MB link
— Sample62_Expt3_elu-U5-DEaddback.fastq.gz RIP-Seq 2.2 MB link
— Sample69_Expt4_input-U5-FLAGonly-siLuc.fastq.gz RIP-Seq 2.0 MB link
— Sample6_Expt1_elu-U1-DEaddback.fastq.gz RIP-Seq 716.8 KB link
— Sample70_Expt4_input-U5-FLAGonly-Caf1z.fastq.gz RIP-Seq 1.8 MB link
— Sample71_Expt5_FU1-Vs-01_V173_rip.fastq.gz RIP-Seq 1.2 MB link
— Sample72_Expt5_FU1-Vs-02_E220_rip.fastq.gz RIP-Seq 1.2 MB link
— Sample73_Expt5_FU1-Vs-03_wt_rip.fastq.gz RIP-Seq 819.2 KB link
— Sample74_Expt5_FU1-Vs-04_de_rip.fastq.gz RIP-Seq 1.8 MB link
— Sample75_Expt5_FU1-Vs-05_a103_rip.fastq.gz RIP-Seq 1.8 MB link
— Sample76_Expt5_FU1-Vs-06_f148_rip.fastq.gz RIP-Seq 1.1 MB link
— SRR2134478_GSM1836493 RIP-Seq link
— SRR2134479_GSM1836494 RIP-Seq link
— SRR2134484_GSM1836499 RIP-Seq link
— SRR2134485_GSM1836500 RIP-Seq link
— SRR2134490_GSM1836505 RIP-Seq link
— SRR2134491_GSM1836506 RIP-Seq link
— SRR2134496_GSM1836511 RIP-Seq link
— SRR2134497_GSM1836512 RIP-Seq link
— SRR2134502_GSM1836517 RIP-Seq link
— SRR2134503_GSM1836518 RIP-Seq link
— SRR2134506_GSM1836521 RIP-Seq link
— SRR2134507_GSM1836522 RIP-Seq link
— SRR2134512_GSM1836527 RIP-Seq link
— SRR2134513_GSM1836528 RIP-Seq link
— SRR2134518_GSM1836533 RIP-Seq 3.0 MB link
— SRR2134519_GSM1836534 RIP-Seq 3.0 MB link
— SRR2134524_GSM1836539 RIP-Seq 2.0 MB link
— SRR2134525_GSM1836540 RIP-Seq 1.0 MB link
— SRR2134530_GSM1836545 RIP-Seq 3.0 MB link
— SRR2134531_GSM1836546 RIP-Seq 3.0 MB link
— SRR2134534_GSM1836549 RIP-Seq 2.0 MB link
— SRR2134535_GSM1836550 RIP-Seq 2.0 MB link
— SRR2134542_GSM1836557 RIP-Seq 2.0 MB link
— SRR2134543_GSM1836558 RIP-Seq 1.0 MB link
— SRR2134544_GSM1836559 RIP-Seq 1.0 MB link
— SRR2134545_GSM1836560 RIP-Seq 1.0 MB link
— SRR2134546_GSM1836561 RIP-Seq link
— SRR2134547_GSM1836562 RIP-Seq 1.0 MB link
— SRR2134548_GSM1836563 RIP-Seq 1.0 MB link
— SRR2134549_GSM1836564 RIP-Seq 1.0 MB link
— SRR2134576_GSM1836591 RIP-Seq link
— SRR2134581_GSM1836596 RIP-Seq 2.0 MB link
— SRR2134582_GSM1836597 RIP-Seq link
— SRR2134587_GSM1836602 RIP-Seq 4.0 MB link
— SRR2134588_GSM1836603 RIP-Seq 2.0 MB link
— SRR2134593_GSM1836608 RIP-Seq 1.0 MB link
— SRR2134594_GSM1836609 RIP-Seq 1.0 MB link
— SRR2134595_GSM1836610 RIP-Seq link
— SRR2134596_GSM1836611 RIP-Seq 1.0 MB link
— SRR2134597_GSM1836612 RIP-Seq 1.0 MB link
— SRR2134598_GSM1836613 RIP-Seq 1.0 MB link
— SRR2134626_GSM1836641 RIP-Seq link
— SRR2134627_GSM1836642 RIP-Seq link
— Sample100_Expt3_input-U6-FLAGonly-siCaf1z.fastq.gz RNA-Seq 911.4 KB link
— Sample101_Expt3_input-U6-WTaddback-siCaf1z.fastq.gz RNA-Seq 860.2 KB link
— Sample102_Expt3_input-U6-DEaddback-siCaf1z.fastq.gz RNA-Seq 2.0 MB link
— Sample104_Expt4_input-U6-FLAGonly-siLuc.fastq.gz RNA-Seq 1.1 MB link
— Sample105_Expt4_input-U6-FLAGonly-siCaf1z.fastq.gz RNA-Seq 1003.5 KB link
— Sample106_Expt4_input-U6-WTaddback-siCaf1z.fastq.gz RNA-Seq 1.1 MB link
— Sample107_Expt4_input-U6-DEaddback-siCaf1z.fastq.gz RNA-Seq 993.3 KB link
— Sample10_Expt1_input-U2-DEaddback-siCaf1z.fastq.gz RNA-Seq 819.2 KB link
— Sample110_Expt4_FU4-01_siLUCtot_rip41.fastq.gz RNA-Seq 1.5 MB link
— Sample111_Expt4_FU4-02_siCaf1ztot_rip41.fastq.gz RNA-Seq 1.9 MB link
— Sample112_Expt4_FU4-03_WTtot_rip41.fastq.gz RNA-Seq 1.9 MB link
— Sample113_Expt4_FU4-04_DEtot_rip41.fastq.gz RNA-Seq 1.6 MB link
— Sample116_Expt6_FU1-Vs-09_siL_tot_42.fastq.gz RNA-Seq 1.5 MB link
— Sample117_Expt6_FU1-Vs-10_siC_tot_42.fastq.gz RNA-Seq 1.8 MB link
— Sample118_Expt6_FU1-Vs-11_WT_tot_42.fastq.gz RNA-Seq 1.6 MB link
— Sample119_Expt6_FU1-Vs-12_DE_tot_42.fastq.gz RNA-Seq 1.9 MB link
— Sample126_Expt7_FU1-Vs-20_siL_tot_40.fastq.gz RNA-Seq 1.3 MB link
— Sample127_Expt7_FU1-Vs-21_siC_tot_40.fastq.gz RNA-Seq 1.3 MB link
— Sample128_Expt7_FU1-Vs-22_WT_tot_40.fastq.gz RNA-Seq 1.2 MB link
— Sample129_Expt7_FU1-Vs-07_DE_tot_40.fastq.gz RNA-Seq 1.2 MB link
— Sample130_Expt7_FU1-Vs-13_A103_tot_40.fastq.gz RNA-Seq 1.4 MB link
— Sample131_Expt7_FU1-Vs-14_F148_tot_40.fastq.gz RNA-Seq 1.3 MB link
— Sample132_Expt7_FU1-Vs-15_V173_tot_40.fastq.gz RNA-Seq 1.1 MB link
— Sample133_Expt7_FU1-Vs-16_E220_tot_40.fastq.gz RNA-Seq 962.6 KB link
— Sample134_Expt9_FU1V68-01_NPC__ATCC.fastq.gz RNA-Seq 757.8 KB link
— Sample135_Expt9_FU1V68-02_NPC_1603A1.fastq.gz RNA-Seq 931.8 KB link
— Sample136_Expt9_FU1V68-03_NPC_1603A3.fastq.gz RNA-Seq 768.0 KB link
— Sample137_Expt9_FU1V68-04_NPC_1603U3.fastq.gz RNA-Seq 890.9 KB link
— Sample138_Expt9_FU1V68-05_NPC_1603U4.fastq.gz RNA-Seq 716.8 KB link
— Sample139_Expt9_FU2-01_NPC__ATCC.fastq.gz RNA-Seq 942.1 KB link
— Sample13_Expt2_input-U1-FLAGonly-siLuc.fastq.gz RNA-Seq 471.0 KB link
— Sample140_Expt9_FU2-02_NPC_1603A1.fastq.gz RNA-Seq 788.5 KB link
— Sample141_Expt9_FU2-03_NPC_1603A3.fastq.gz RNA-Seq 768.0 KB link
— Sample142_Expt9_FU2-04_NPC_1603U3.fastq.gz RNA-Seq 911.4 KB link
— Sample143_Expt9_FU2-05_NPC_1603U4.fastq.gz RNA-Seq 655.4 KB link
— Sample144_Expt9_FU5-03_NPC__ATCC.fastq.gz RNA-Seq 1.4 MB link
— Sample145_Expt9_FU5-04_NPC_1603A1.fastq.gz RNA-Seq 1.2 MB link
— Sample146_Expt9_FU5-05_NPC_1603A3.fastq.gz RNA-Seq 1.6 MB link
— Sample147_Expt9_FU5-06_NPC_1603U3.fastq.gz RNA-Seq 1.3 MB link
— Sample148_Expt9_FU5-07_NPC_1603U4.fastq.gz RNA-Seq 1.4 MB link
— Sample149_Expt4_FU5-08_siLuc_tot_41.fastq.gz RNA-Seq 1.8 MB link
— Sample14_Expt2_input-U1-FLAGonly-siCaf1z.fastq.gz RNA-Seq 399.4 KB link
— Sample150_Expt4_FU5-09_siC_tot_41.fastq.gz RNA-Seq 2.4 MB link
— Sample151_Expt4_FU5-10_WT_tot_41.fastq.gz RNA-Seq 1.7 MB link
— Sample152_Expt4_FU5-11_DE_tot_41.fastq.gz RNA-Seq 1.5 MB link
— Sample15_Expt2_input-U1-WTaddback-siCaf1z.fastq.gz RNA-Seq 430.1 KB link
— Sample16_Expt2_input-U1-DEaddback-siCaf1z.fastq.gz RNA-Seq 471.0 KB link
— Sample19_Expt2_input-U2-FLAGonly-siLuc.fastq.gz RNA-Seq 276.5 KB link
— Sample1_Expt1_input-U1-FLAGonly-siLuc.fastq.gz RNA-Seq 522.2 KB link
— Sample20_Expt2_input-U2-FLAGonly-siCaf1z.fastq.gz RNA-Seq 235.5 KB link
— Sample21_Expt2_input-U2-WTaddback-siCaf1z.fastq.gz RNA-Seq 266.2 KB link
— Sample22_Expt2_input-U2-DEaddback-siCaf1z.fastq.gz RNA-Seq 276.5 KB link
— Sample25_Expt2_input-U4-FLAGonly-siLuc.fastq.gz RNA-Seq 563.2 KB link
— Sample26_Expt2_input-U4-FLAGonly-siCaf1z.fastq.gz RNA-Seq 532.5 KB link
— Sample27_Expt2_input-U4-WTaddback-siCaf1z.fastq.gz RNA-Seq 460.8 KB link
— Sample28_Expt2_input-U4-DEaddback-siCaf1z.fastq.gz RNA-Seq 440.3 KB link
— Sample2_Expt1_input-U1-FLAGonly-siCaf1z.fastq.gz RNA-Seq 604.2 KB link
— Sample31_Expt2_input-U5-WTaddback-siCaf1z.fastq.gz RNA-Seq 399.4 KB link
— Sample32_Expt2_input-U5-DEaddback-siCaf1z.fastq.gz RNA-Seq 409.6 KB link
— Sample35_Expt2_input-U6-FLAGonly-siLuc.fastq.gz RNA-Seq 256.0 KB link
— Sample36_Expt2_input-U6-FLAGonly-siCaf1z.fastq.gz RNA-Seq 256.0 KB link
— Sample37_Expt2_input-U6-WTaddback-siCaf1z.fastq.gz RNA-Seq 286.7 KB link
— Sample38_Expt2_input-U6-DEaddback-siCaf1z.fastq.gz RNA-Seq 286.7 KB link
— Sample3_Expt1_input-U1-WTaddback-siCaf1z.fastq.gz RNA-Seq 573.4 KB link
— Sample41_Expt3_input-U1-FLAGonly-siLuc.fastq.gz RNA-Seq 2.3 MB link
— Sample42_Expt3_input-U1-FLAGonly-siCaf1z.fastq.gz RNA-Seq 2.7 MB link
— Sample43_Expt3_input-U1-WTaddback-siCaf1z.fastq.gz RNA-Seq 3.6 MB link
— Sample44_Expt3_input-U1-DEaddback-siCaf1z.fastq.gz RNA-Seq 2.5 MB link
— Sample47_Expt3_input-U2-FLAGonly-siLuc.fastq.gz RNA-Seq 3.8 MB link
— Sample48_Expt3_input-U2-FLAGonly-siCaf1z.fastq.gz RNA-Seq 1.6 MB link
— Sample49_Expt3_input-U2-WTaddback-siCaf1z.fastq.gz RNA-Seq 2.1 MB link
— Sample4_Expt1_input-U1-DEaddback-siCaf1z.fastq.gz RNA-Seq 573.4 KB link
— Sample50_Expt3_input-U2-DEaddback-siCaf1z.fastq.gz RNA-Seq 1.4 MB link
— Sample53_Expt3_input-U4-FLAGonly-siLuc.fastq.gz RNA-Seq 4.4 MB link
— Sample54_Expt3_input-U4-FLAGonly-siCaf1z.fastq.gz RNA-Seq 3.7 MB link
— Sample55_Expt3_input-U4-WTaddback-siCaf1z.fastq.gz RNA-Seq 4.6 MB link
— Sample56_Expt3_input-U4-DEaddback-siCaf1z.fastq.gz RNA-Seq 2.9 MB link
— Sample59_Expt3_input-U5-WTaddback-siCaf1z.fastq.gz RNA-Seq 4.0 MB link
— Sample60_Expt3_input-U5-DEaddback-siCaf1z.fastq.gz RNA-Seq 2.7 MB link
— Sample63_Expt8_PATFIB_U1_ATCC.fastq.gz RNA-Seq 8.7 MB link
— Sample64_Expt8_PATFIB_U1_1603A.fastq.gz RNA-Seq 8.7 MB link
— Sample65_Expt8_PATFIB_U1_1603U.fastq.gz RNA-Seq 5.3 MB link
— Sample66_Expt8_PATFIB_U1_4127A.fastq.gz RNA-Seq 8.1 MB link
— Sample67_Expt8_PATFIB_U1_4128A.fastq.gz RNA-Seq 9.1 MB link
— Sample68_Expt8_PATFIB_U1_4128U.fastq.gz RNA-Seq 11.8 MB link
— Sample77_Expt5_FU1-Vs-12_siL_tot.fastq.gz RNA-Seq 1.3 MB link
— Sample78_Expt5_FU1-Vs-13_siC_tot.fastq.gz RNA-Seq 1.6 MB link
— Sample79_Expt5_FU1-Vs-14_wt_tot.fastq.gz RNA-Seq 1.7 MB link
— Sample7_Expt1_input-U2-FLAGonly-siLuc.fastq.gz RNA-Seq 747.5 KB link
— Sample80_Expt5_FU1-Vs-15_de_tot.fastq.gz RNA-Seq 2.2 MB link
— Sample81_Expt5_FU1-Vs-16_a103_tot.fastq.gz RNA-Seq 1.5 MB link
— Sample82_Expt5_FU1-Vs-17_f148_tot.fastq.gz RNA-Seq 1.7 MB link
— Sample83_Expt5_FU1-Vs-18_v173_tot.fastq.gz RNA-Seq 1.8 MB link
— Sample84_Expt5_FU1-Vs-19_e220_tot.fastq.gz RNA-Seq 1.5 MB link
— Sample85_Expt8_PATFIB_U2_ATCC.fastq.gz RNA-Seq 901.1 KB link
— Sample86_Expt8_PATFIB_U2_1603A.fastq.gz RNA-Seq 686.1 KB link
— Sample87_Expt8_PATFIB_U2_1603U.fastq.gz RNA-Seq 778.2 KB link
— Sample88_Expt8_PATFIB_U2_4127A.fastq.gz RNA-Seq 1.1 MB link
— Sample89_Expt8_PATFIB_U2_4128A.fastq.gz RNA-Seq 727.0 KB link
— Sample8_Expt1_input-U2-FLAGonly-siCaf1z.fastq.gz RNA-Seq 716.8 KB link
— Sample90_Expt8_PATFIB_U2_4128U.fastq.gz RNA-Seq 1013.8 KB link
— Sample91_Expt8_PATFIB_U5_ATCC.fastq.gz RNA-Seq 1.7 MB link
— Sample92_Expt8_PATFIB_U5_1603A.fastq.gz RNA-Seq 614.4 KB link
— Sample93_Expt8_PATFIB_U5_1603U.fastq.gz RNA-Seq 962.6 KB link
— Sample94_Expt8_PATFIB_U5_4127A.fastq.gz RNA-Seq 921.6 KB link
— Sample95_Expt8_PATFIB_U5_4128A.fastq.gz RNA-Seq 1.3 MB link
— Sample96_Expt8_PATFIB_U5_4128U.fastq.gz RNA-Seq 911.4 KB link
— Sample97_Expt2_FU5-09_siLuc_totalrip35.fastq.gz RNA-Seq 2.8 MB link
— Sample98_Expt2_FU5-10_siCaf_totalrip35.fastq.gz RNA-Seq 2.7 MB link
— Sample99_Expt3_input-U6-FLAGonly-siLuc.fastq.gz RNA-Seq 890.9 KB link
— Sample9_Expt1_input-U2-WTaddback-siCaf1z.fastq.gz RNA-Seq 706.6 KB link
— SRR2134474_GSM1836489 RNA-Seq link
— SRR2134475_GSM1836490 RNA-Seq link
— SRR2134476_GSM1836491 RNA-Seq link
— SRR2134477_GSM1836492 RNA-Seq link
— SRR2134480_GSM1836495 RNA-Seq link
— SRR2134481_GSM1836496 RNA-Seq link
— SRR2134482_GSM1836497 RNA-Seq link
— SRR2134483_GSM1836498 RNA-Seq link
— SRR2134486_GSM1836501 RNA-Seq link
— SRR2134487_GSM1836502 RNA-Seq link
— SRR2134488_GSM1836503 RNA-Seq link
— SRR2134489_GSM1836504 RNA-Seq link
— SRR2134492_GSM1836507 RNA-Seq link
— SRR2134493_GSM1836508 RNA-Seq link
— SRR2134494_GSM1836509 RNA-Seq link
— SRR2134495_GSM1836510 RNA-Seq link
— SRR2134498_GSM1836513 RNA-Seq link
— SRR2134499_GSM1836514 RNA-Seq link
— SRR2134500_GSM1836515 RNA-Seq link
— SRR2134501_GSM1836516 RNA-Seq link
— SRR2134504_GSM1836519 RNA-Seq link
— SRR2134505_GSM1836520 RNA-Seq link
— SRR2134508_GSM1836523 RNA-Seq link
— SRR2134509_GSM1836524 RNA-Seq link
— SRR2134510_GSM1836525 RNA-Seq link
— SRR2134511_GSM1836526 RNA-Seq link
— SRR2134514_GSM1836529 RNA-Seq 2.0 MB link
— SRR2134515_GSM1836530 RNA-Seq 2.0 MB link
— SRR2134516_GSM1836531 RNA-Seq 3.0 MB link
— SRR2134517_GSM1836532 RNA-Seq 2.0 MB link
— SRR2134520_GSM1836535 RNA-Seq 3.0 MB link
— SRR2134521_GSM1836536 RNA-Seq 1.0 MB link
— SRR2134522_GSM1836537 RNA-Seq 2.0 MB link
— SRR2134523_GSM1836538 RNA-Seq 1.0 MB link
— SRR2134526_GSM1836541 RNA-Seq 4.0 MB link
— SRR2134527_GSM1836542 RNA-Seq 3.0 MB link
— SRR2134528_GSM1836543 RNA-Seq 4.0 MB link
— SRR2134529_GSM1836544 RNA-Seq 2.0 MB link
— SRR2134532_GSM1836547 RNA-Seq 3.0 MB link
— SRR2134533_GSM1836548 RNA-Seq 2.0 MB link
— SRR2134536_GSM1836551 RNA-Seq 8.0 MB link
— SRR2134537_GSM1836552 RNA-Seq 8.0 MB link
— SRR2134538_GSM1836553 RNA-Seq 5.0 MB link
— SRR2134539_GSM1836554 RNA-Seq 8.0 MB link
— SRR2134540_GSM1836555 RNA-Seq 9.0 MB link
— SRR2134541_GSM1836556 RNA-Seq 11.0 MB link
— SRR2134550_GSM1836565 RNA-Seq 1.0 MB link
— SRR2134551_GSM1836566 RNA-Seq 1.0 MB link
— SRR2134552_GSM1836567 RNA-Seq 1.0 MB link
— SRR2134553_GSM1836568 RNA-Seq 2.0 MB link
— SRR2134554_GSM1836569 RNA-Seq 1.0 MB link
— SRR2134555_GSM1836570 RNA-Seq 1.0 MB link
— SRR2134556_GSM1836571 RNA-Seq 1.0 MB link
— SRR2134557_GSM1836572 RNA-Seq 1.0 MB link
— SRR2134558_GSM1836573 RNA-Seq link
— SRR2134559_GSM1836574 RNA-Seq link
— SRR2134560_GSM1836575 RNA-Seq link
— SRR2134561_GSM1836576 RNA-Seq 1.0 MB link
— SRR2134562_GSM1836577 RNA-Seq link
— SRR2134563_GSM1836578 RNA-Seq link
— SRR2134564_GSM1836579 RNA-Seq 1.0 MB link
— SRR2134565_GSM1836580 RNA-Seq link
— SRR2134566_GSM1836581 RNA-Seq link
— SRR2134567_GSM1836582 RNA-Seq link
— SRR2134568_GSM1836583 RNA-Seq 1.0 MB link
— SRR2134569_GSM1836584 RNA-Seq link
— SRR2134570_GSM1836585 RNA-Seq 2.0 MB link
— SRR2134571_GSM1836586 RNA-Seq 2.0 MB link
— SRR2134572_GSM1836587 RNA-Seq link
— SRR2134573_GSM1836588 RNA-Seq link
— SRR2134574_GSM1836589 RNA-Seq link
— SRR2134575_GSM1836590 RNA-Seq 2.0 MB link
— SRR2134577_GSM1836592 RNA-Seq 1.0 MB link
— SRR2134578_GSM1836593 RNA-Seq link
— SRR2134579_GSM1836594 RNA-Seq 1.0 MB link
— SRR2134580_GSM1836595 RNA-Seq link
— SRR2134583_GSM1836598 RNA-Seq 1.0 MB link
— SRR2134584_GSM1836599 RNA-Seq 1.0 MB link
— SRR2134585_GSM1836600 RNA-Seq 1.0 MB link
— SRR2134586_GSM1836601 RNA-Seq 1.0 MB link
— SRR2134589_GSM1836604 RNA-Seq 1.0 MB link
— SRR2134590_GSM1836605 RNA-Seq 1.0 MB link
— SRR2134591_GSM1836606 RNA-Seq 1.0 MB link
— SRR2134592_GSM1836607 RNA-Seq 1.0 MB link
— SRR2134599_GSM1836614 RNA-Seq 1.0 MB link
— SRR2134600_GSM1836615 RNA-Seq 1.0 MB link
— SRR2134601_GSM1836616 RNA-Seq 1.0 MB link
— SRR2134602_GSM1836617 RNA-Seq 1.0 MB link
— SRR2134603_GSM1836618 RNA-Seq 1.0 MB link
— SRR2134604_GSM1836619 RNA-Seq 1.0 MB link
— SRR2134605_GSM1836620 RNA-Seq 1.0 MB link
— SRR2134606_GSM1836621 RNA-Seq link
— SRR2134607_GSM1836622 RNA-Seq link
— SRR2134608_GSM1836623 RNA-Seq link
— SRR2134609_GSM1836624 RNA-Seq link
— SRR2134610_GSM1836625 RNA-Seq link
— SRR2134611_GSM1836626 RNA-Seq link
— SRR2134612_GSM1836627 RNA-Seq link
— SRR2134613_GSM1836628 RNA-Seq link
— SRR2134614_GSM1836629 RNA-Seq link
— SRR2134615_GSM1836630 RNA-Seq link
— SRR2134616_GSM1836631 RNA-Seq link
— SRR2134617_GSM1836632 RNA-Seq 1.0 MB link
— SRR2134618_GSM1836633 RNA-Seq 1.0 MB link
— SRR2134619_GSM1836634 RNA-Seq 1.0 MB link
— SRR2134620_GSM1836635 RNA-Seq 1.0 MB link
— SRR2134621_GSM1836636 RNA-Seq 1.0 MB link
— SRR2134622_GSM1836637 RNA-Seq 1.0 MB link
— SRR2134623_GSM1836638 RNA-Seq 2.0 MB link
— SRR2134624_GSM1836639 RNA-Seq 1.0 MB link
— SRR2134625_GSM1836640 RNA-Seq 1.0 MB link