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GSE284636

GSE GEO
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Short 5’ UTRs serve as a marker for mRNA translation inhibition by the IFIT2-IFIT3 antiviral complex

Organism: Mus musculus
Platform: GPL20301
Samples: 87
Experiment Types:
Other
Submitted: Dec 18 2024
Last Updated: Mar 12 2025
Status: Public on Mar 11 2025
Contact: Eric,,Van Nostrand (Baylor College of Medicine)

Relations

BioProject: https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1199975

Summary

Recognition of non-self nucleic acids, including cytoplasmic dsDNA, dsRNA, or mRNAs lacking proper 5' cap structures, is critical for the induction of innate immunity against viruses. Here, we demonstrate that short 5’ untranslated regions (UTRs), a characteristic of many viral mRNAs, can also serve as molecular pattern for innate immune recognition via the interferon-induced proteins, IFIT2 and IFIT3. The IFIT2-IFIT3 heterodimer, formed through an intricate domain swap structure, mediates viral mRNA 5' end recognition, translation inhibition, and ultimately antiviral activity. Critically, 5' UTR lengths <50 nucleotides are necessary and sufficient to sensitize an mRNA to translation inhibition by the IFIT2-IFIT3 complex. Thus, diverse viruses whose mRNAs contain short 5’ UTRs, such as vesicular stomatitis virus and parainfluenza virus 3, are sensitive to IFIT2-IFIT3-mediated antiviral activity. Our work reveals a new size-restricted pattern of nucleic acid innate immune recognition for the selective repression of viral replication.

Overall Design

eCLIP was performed as previously described (Blue SB, et al. Nature Protocols 2022), using antibodies against FLAG (M2 / F1804, Sigma) and HA (HA.11 / 901502, Biolegend) for 293T experiments, and IFIT2 (PA3-845, ThermoFisher) and IFIT3 (ABF1048, Millipore) for MEF experiments. Most experiments were performed in biological duplicate, except for uninfected 293T samples (which were single replicates).

Analysis (10 steps)

View Data Processing
Processing steps for GSE284636
  1. Standard processing of eCLIP data was performed as previously described (Blue SB, et al.
  2. Nature Protocols 2022), with mapping performed to a custom genome index that included both the VSV genome and either hg19 (for 293T experiments) or mm10 (for MEF experiments) as described below.
  3. UMI removal and cut adapt: umi_tools extract --random-seed 1 --bc-pattern NNNNNNNNNN --stdin 23145FL-08-01-37_S37_L001_R1_001.fastq.gz --log /dev/null | cutadapt -j 8 --match-read-wildcards --times 1 -e 0.1 --quality-cutoff 6 -m 18 -a a_adapters.fasta -O 1 - --report minimal 2> EV225_IP.cut.adapt.log | cutadapt -j 8 --match-read-wildcards --times 1 -e 0.1 --quality-cutoff 6 -m 18 -a a_adapters.fasta -O 5 - -o EV225_IP.trim.gz --report minimal >>EV225_IP.cut.adapt.log
  4. Repeat mapping (takes adapter-trimmed fastq files, and maps to a repeat database to filter repeat elements prior to genome mapping: STAR --runMode alignReads --runThreadN 8 --alignEndsType EndToEnd --genomeDir [mus_musculus_repbase_v2 or homo_sapiens_repbase_v2] --genomeLoad NoSharedMemory --outBAMcompression 10 --outFileNamePrefix EV225_IP.repeat.map --outFilterMultimapNmax 100 --outFilterMultimapScoreRange 1 --outFilterScoreMin 10 --outFilterType BySJout --outReadsUnmapped Fastx --outSAMattrRGline ID:foo --outSAMattributes All --outSAMmode Full --outSAMtype BAM Unsorted --outSAMunmapped None --outStd Log --readFilesCommand zcat --readFilesIn EV225_IP.trim.gz
  5. Unique genomic mapping (takes repeat-removed reads and maps to the reference genome: STAR --runMode alignReads --runThreadN 8 --alignEndsType EndToEnd --genomeDir [hg19+VSV or mm10+VSV] --genomeLoad NoSharedMemory --outBAMcompression 10 --outFileNamePrefix EV225_IP.genome.map --outFilterMultimapNmax 1 --outFilterMultimapScoreRange 1 --outFilterScoreMin 10 --outFilterType BySJout --outReadsUnmapped Fastx --outSAMattrRGline ID:foo --outSAMattributes All --outSAMmode Full --outSAMtype BAM Unsorted --outSAMunmapped None --outStd Log --readFilesIn EV225_IP.repeat.mapUnmapped.out.mate1
  6. Sort mapped reads: samtools sort -@ 8 -m 2G -o EV225_IP.genome.map.bam *Aligned.out.bam
  7. Remove PCR duplicate reads: samtools index EV225_IP.genome.map.bam umi_tools dedup --random-seed 1 --stdin EV225_IP.genome.map.bam --method unique --stdout EV225_IP.bam
  8. Make bigwigs: samtools index EV225_IP.bam b2bw EV225_IP.bam --cpus 1
Showing first 8 steps.

Supplementary Files (1)

GSE284636_RAW.tar Download
GEO Samples (87)
GSM8689634 GSM8689635 GSM8689636 GSM8689637 GSM8689638 GSM8689639 GSM8689640 GSM8689641 GSM8689642 GSM8689643 GSM8689644 GSM8689645 GSM8689646 GSM8689647 GSM8689648 GSM8689649 GSM8689650 GSM8689651 GSM8689652 GSM8689653 GSM8689654 GSM8689655 GSM8689656 GSM8689657 GSM8689658 GSM8689659 GSM8689660 GSM8689661 GSM8689662 GSM8689663 GSM8689664 GSM8689665 GSM8689666 GSM8689667 GSM8689668 GSM8689669 GSM8689670 GSM8689671 GSM8689672 GSM8689673 GSM8689674 GSM8689675 GSM8689676 GSM8689677 GSM8689678 GSM8689679 GSM8689680 GSM8689681 GSM8689682 GSM8689683 GSM8689684 GSM8689685 GSM8689686 GSM8689687 GSM8689688 GSM8689689 GSM8689690 GSM8689691 GSM8689692 GSM8689693 GSM8689694 GSM8689695 GSM8689696 GSM8689697 GSM8689698 GSM8689699 GSM8689700 GSM8689701 GSM8689702 GSM8689703 GSM8689704 GSM8689705 GSM8689706 GSM8689707 GSM8689708 GSM8689709 GSM8689710 GSM8689711 GSM8689712 GSM8689713 GSM8689714 GSM8689715 GSM8689716 GSM8689717 GSM8689718 GSM8689719 GSM8689720

Dataset Citations (1)

Short 5' UTRs serve as a marker for viral mRNA translation inhibition by the IFIT2-IFIT3 antiviral complex.
PMID 39990370 · 2025 · bioRxiv : the preprint server for biology
Dustin R Glasner, Candace Todd, Brian Cook, Agustina D'Urso, Shivani Khosla, Elena Estrada, Jaxon D Wagner, Mason D Bartels, Pierce Ford, Jordan Prych, Katie Hatch, Brian A Yee, Kaori M Ego, Qishan Liang, Sarah R Holland, James Brett Case, Kevin D Corbett, Michael S Diamond, Gene W Yeo, Mark A Herzik, Eric L Van Nostrand, Matthew D Daugherty

SRA Experiments (87) and Runs (87)

Total: 41108 MB
SRX27135143 SRP552549 OTHER SINGLE
GSM8689634: 293T_control_HA_IP_VSV_rep1; Homo sapiens; OTHER
Sample: SRS23590686
BioProject: PRJNA1199975
BioSample: SAMN45902245
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: HEK293T
cell line: HEK293T
genotype: WT
treatment: -
geo_loc_name: missing
collection_date: missing
Original files (1)
HEK293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR31773569 15619046 1171428450 445.44 E_HA_IP_1_S64_L005_R1_001.fastq.gz, SRR31773569, SRR31773569.lite SRA
SRX27135144 SRP552549 OTHER SINGLE
GSM8689635: 293T_control_HA_input_VSV_rep1; Homo sapiens; OTHER
Sample: SRS23590687
BioProject: PRJNA1199975
BioSample: SAMN45902244
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: HEK293T
cell line: HEK293T
genotype: WT
treatment: -
geo_loc_name: missing
collection_date: missing
Original files (1)
HEK293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR31773568 15526388 1164479100 437.45 E_HA_INPUT_1_S71_L005_R1_001.fastq.gz, SRR31773568, SRR31773568.lite SRA
SRX27135145 SRP552549 OTHER SINGLE
GSM8689636: 293T_control_FLAG_IP_VSV_rep1; Homo sapiens; OTHER
Sample: SRS23590688
BioProject: PRJNA1199975
BioSample: SAMN45902243
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: HEK293T
cell line: HEK293T
genotype: WT
treatment: -
geo_loc_name: missing
collection_date: missing
Original files (1)
HEK293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR31773567 18587330 1394049750 531.14 E_FLAG_IP_1_S65_L005_R1_001.fastq.gz, SRR31773567, SRR31773567.lite SRA
SRX27135146 SRP552549 OTHER SINGLE
GSM8689637: 293T_control_FLAG_input_VSV_rep1; Homo sapiens; OTHER
Sample: SRS23590689
BioProject: PRJNA1199975
BioSample: SAMN45902242
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: HEK293T
cell line: HEK293T
genotype: WT
treatment: -
geo_loc_name: missing
collection_date: missing
Original files (1)
HEK293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR31773566 17337901 1300342575 490.42 E_FLAG_INPUT_1_S72_L005_R1_001.fastq.gz, SRR31773566, SRR31773566.lite SRA
SRX27135147 SRP552549 OTHER SINGLE
GSM8689638: 293T_IFIT1:FLAGoe_FLAG_IP_VSV_rep1; Homo sapiens; OTHER
Sample: SRS23590690
BioProject: PRJNA1199975
BioSample: SAMN45902241
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: HEK293T
cell line: HEK293T
genotype: IFIT1:FLAG o/e
treatment: -
geo_loc_name: missing
collection_date: missing
Original files (1)
HEK293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR31773565 19475222 1460641650 555.0 H1_IP_1_S66_L005_R1_001.fastq.gz, SRR31773565, SRR31773565.lite SRA
SRX27135148 SRP552549 OTHER SINGLE
GSM8689639: 293T_IFIT1:FLAGoe_FLAG_input_VSV_rep1; Homo sapiens; OTHER
Sample: SRS23590691
BioProject: PRJNA1199975
BioSample: SAMN45902240
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: HEK293T
cell line: HEK293T
genotype: IFIT1:FLAG o/e
treatment: -
geo_loc_name: missing
collection_date: missing
Original files (1)
HEK293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR31773564 15221803 1141635225 430.06 H1_INPUT_1_S73_L005_R1_001.fastq.gz, SRR31773564, SRR31773564.lite SRA
SRX27135149 SRP552549 OTHER SINGLE
GSM8689640: 293T_IFIT2:FLAGoe_FLAG_IP_VSV_rep1; Homo sapiens; OTHER
Sample: SRS23590692
BioProject: PRJNA1199975
BioSample: SAMN45902239
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: HEK293T
cell line: HEK293T
genotype: IFIT2:FLAG o/e
treatment: -
geo_loc_name: missing
collection_date: missing
Original files (1)
HEK293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR31773563 18591879 1394390925 535.23 M2_IP_1_S67_L005_R1_001.fastq.gz, SRR31773563, SRR31773563.lite SRA
SRX27135150 SRP552549 OTHER SINGLE
GSM8689641: 293T_IFIT2:FLAGoe_FLAG_input_VSV_rep1; Homo sapiens; OTHER
Sample: SRS23590693
BioProject: PRJNA1199975
BioSample: SAMN45902238
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: HEK293T
cell line: HEK293T
genotype: IFIT2:FLAG o/e
treatment: -
geo_loc_name: missing
collection_date: missing
Original files (1)
HEK293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR31773562 16239213 1217940975 460.48 M2_INPUT_1_S74_L005_R1_001.fastq.gz, SRR31773562, SRR31773562.lite SRA
SRX27135151 SRP552549 OTHER SINGLE
GSM8689642: 293T_IFIT3:HAoe_HA_IP_VSV_rep1; Homo sapiens; OTHER
Sample: SRS23590694
BioProject: PRJNA1199975
BioSample: SAMN45902237
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: HEK293T
cell line: HEK293T
genotype: IFIT3:HA o/e
treatment: -
geo_loc_name: missing
collection_date: missing
Original files (1)
HEK293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR31773561 12860498 964537350 370.52 M3_IP_1_S68_L005_R1_001.fastq.gz, SRR31773561, SRR31773561.lite SRA
SRX27135152 SRP552549 OTHER SINGLE
GSM8689643: 293T_IFIT3:HAoe_HA_input_VSV_rep1; Homo sapiens; OTHER
Sample: SRS23590695
BioProject: PRJNA1199975
BioSample: SAMN45902236
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: HEK293T
cell line: HEK293T
genotype: IFIT3:HA o/e
treatment: -
geo_loc_name: missing
collection_date: missing
Original files (1)
HEK293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR31773560 17125378 1284403350 482.22 M3_INPUT_1_S75_L005_R1_001.fastq.gz, SRR31773560, SRR31773560.lite SRA
SRX27135153 SRP552549 OTHER SINGLE
GSM8689644: 293T_IFIT2:FLAG+IFIT3:HAoe_HA_IP_VSV_rep1; Homo sapiens; OTHER
Sample: SRS23590696
BioProject: PRJNA1199975
BioSample: SAMN45902235
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: HEK293T
cell line: HEK293T
genotype: IFIT2:FLAG+IFIT3:HA o/e
treatment: -
geo_loc_name: missing
collection_date: missing
Original files (1)
HEK293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR31773559 39461629 2959622175 1121.04 M23_HA_IP_1_S69_L005_R1_001.fastq.gz, SRR31773559, SRR31773559.lite SRA
SRX27135154 SRP552549 OTHER SINGLE
GSM8689645: 293T_IFIT2:FLAG+IFIT3:HAoe_HA_input_VSV_rep1; Homo sapiens; OTHER
Sample: SRS23590697
BioProject: PRJNA1199975
BioSample: SAMN45902234
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: HEK293T
cell line: HEK293T
genotype: IFIT2:FLAG+IFIT3:HA o/e
treatment: -
geo_loc_name: missing
collection_date: missing
Original files (1)
HEK293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR31773558 16240282 1218021150 458.42 M23_HA_INPUT_1_S76_L005_R1_001.fastq.gz, SRR31773558, SRR31773558.lite SRA
SRX27135155 SRP552549 OTHER SINGLE
GSM8689646: 293T_IFIT2:FLAG+IFIT3:HAoe_FLAG_IP_VSV_rep1; Homo sapiens; OTHER
Sample: SRS23590698
BioProject: PRJNA1199975
BioSample: SAMN45902233
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: HEK293T
cell line: HEK293T
genotype: IFIT2:FLAG+IFIT3:HA o/e
treatment: -
geo_loc_name: missing
collection_date: missing
Original files (1)
HEK293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR31773557 50302058 3772654350 1417.82 M23_FLAG_IP_1_S70_L005_R1_001.fastq.gz, SRR31773557, SRR31773557.lite SRA
SRX27135156 SRP552549 OTHER SINGLE
GSM8689647: 293T_IFIT2:FLAG+IFIT3:HAoe_FLAG_input_VSV_rep1; Homo sapiens; OTHER
Sample: SRS23590699
BioProject: PRJNA1199975
BioSample: SAMN45902232
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: HEK293T
cell line: HEK293T
genotype: IFIT2:FLAG+IFIT3:HA o/e
treatment: -
geo_loc_name: missing
collection_date: missing
Original files (1)
HEK293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR31773556 13412212 1005915900 378.48 M23_FLAG_INPUT_1_S77_L005_R1_001.fastq.gz, SRR31773556, SRR31773556.l… SRA
SRX27135157 SRP552549 OTHER SINGLE
GSM8689648: 293T_control_HA_IP_VSV_rep2; Homo sapiens; OTHER
Sample: SRS23590700
BioProject: PRJNA1199975
BioSample: SAMN45902231
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: HEK293T
cell line: HEK293T
genotype: WT
treatment: -
geo_loc_name: missing
collection_date: missing
Original files (1)
HEK293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR31773555 12175227 913142025 354.32 E_HA_IP_2_S84_L006_R1_001.fastq.gz, SRR31773555, SRR31773555.lite SRA
SRX27135158 SRP552549 OTHER SINGLE
GSM8689649: 293T_control_HA_input_2; Homo sapiens; OTHER
Sample: SRS23590701
BioProject: PRJNA1199975
BioSample: SAMN45902230
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: HEK293T
cell line: HEK293T
genotype: WT
treatment: -
geo_loc_name: missing
collection_date: missing
Original files (1)
HEK293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR31773554 11136522 835239150 321.98 E_HA_INPUT_2_S90_L006_R1_001.fastq.gz, SRR31773554, SRR31773554.lite SRA
SRX27135159 SRP552549 OTHER SINGLE
GSM8689650: 293T_control_FLAG_IP_2; Homo sapiens; OTHER
Sample: SRS23590702
BioProject: PRJNA1199975
BioSample: SAMN45902229
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: HEK293T
cell line: HEK293T
genotype: WT
treatment: -
geo_loc_name: missing
collection_date: missing
Original files (1)
HEK293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR31773553 16649065 1248679875 484.05 E_FLAG_IP_2_S85_L006_R1_001.fastq.gz, SRR31773553, SRR31773553.lite SRA
SRX27135160 SRP552549 OTHER SINGLE
GSM8689651: 293T_control_FLAG_input_2; Homo sapiens; OTHER
Sample: SRS23590703
BioProject: PRJNA1199975
BioSample: SAMN45902228
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: HEK293T
cell line: HEK293T
genotype: WT
treatment: -
geo_loc_name: missing
collection_date: missing
Original files (1)
HEK293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR31773552 15382601 1153695075 443.83 E_FLAG_INPUT_2_S91_L006_R1_001.fastq.gz, SRR31773552, SRR31773552.lite SRA
SRX27135161 SRP552549 OTHER SINGLE
GSM8689652: 293T_IFIT1:FLAGoe_FLAG_IP_VSV_rep2; Homo sapiens; OTHER
Sample: SRS23590704
BioProject: PRJNA1199975
BioSample: SAMN45902227
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: HEK293T
cell line: HEK293T
genotype: IFIT1:FLAG o/e
treatment: -
geo_loc_name: missing
collection_date: missing
Original files (1)
HEK293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR31773551 14060345 1054525875 409.62 H1_IP_1_S66_L006_R1_001.fastq.gz, SRR31773551, SRR31773551.lite SRA
SRX27135162 SRP552549 OTHER SINGLE
GSM8689653: 293T_IFIT1:FLAGoe_FLAG_input_VSV_rep2; Homo sapiens; OTHER
Sample: SRS23590705
BioProject: PRJNA1199975
BioSample: SAMN45902226
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: HEK293T
cell line: HEK293T
genotype: IFIT1:FLAG o/e
treatment: -
geo_loc_name: missing
collection_date: missing
Original files (1)
HEK293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR31773550 12899816 967486200 372.39 H1_INPUT_2_S92_L006_R1_001.fastq.gz, SRR31773550, SRR31773550.lite SRA
SRX27135163 SRP552549 OTHER SINGLE
GSM8689654: 293T_IFIT2:FLAGoe_FLAG_IP_VSV_rep2; Homo sapiens; OTHER
Sample: SRS23590706
BioProject: PRJNA1199975
BioSample: SAMN45902225
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: HEK293T
cell line: HEK293T
genotype: IFIT2:FLAG o/e
treatment: -
geo_loc_name: missing
collection_date: missing
Original files (1)
HEK293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR31773549 15226833 1142012475 447.16 M2_IP_2_S86_L006_R1_001.fastq.gz, SRR31773549, SRR31773549.lite SRA
SRX27135164 SRP552549 OTHER SINGLE
GSM8689655: 293T_IFIT2:FLAGoe_FLAG_input_VSV_rep2; Homo sapiens; OTHER
Sample: SRS23590707
BioProject: PRJNA1199975
BioSample: SAMN45902224
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: HEK293T
cell line: HEK293T
genotype: IFIT2:FLAG o/e
treatment: -
geo_loc_name: missing
collection_date: missing
Original files (1)
HEK293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR31773548 18397058 1379779350 532.51 M2_INPUT_2_S93_L006_R1_001.fastq.gz, SRR31773548, SRR31773548.lite SRA
SRX27135165 SRP552549 OTHER SINGLE
GSM8689656: 293T_IFIT3:HAoe_HA_IP_VSV_rep2; Homo sapiens; OTHER
Sample: SRS23590708
BioProject: PRJNA1199975
BioSample: SAMN45902223
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: HEK293T
cell line: HEK293T
genotype: IFIT3:HA o/e
treatment: -
geo_loc_name: missing
collection_date: missing
Original files (1)
HEK293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR31773547 20000464 1500034800 578.72 M3_IP_2_S87_L006_R1_001.fastq.gz, SRR31773547, SRR31773547.lite SRA
SRX27135166 SRP552549 OTHER SINGLE
GSM8689657: 293T_IFIT3:HAoe_HA_input_VSV_rep2; Homo sapiens; OTHER
Sample: SRS23590709
BioProject: PRJNA1199975
BioSample: SAMN45902222
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: HEK293T
cell line: HEK293T
genotype: IFIT3:HA o/e
treatment: -
geo_loc_name: missing
collection_date: missing
Original files (1)
HEK293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR31773546 13898031 1042352325 399.72 M3_INPUT_2_S94_L006_R1_001.fastq.gz, SRR31773546, SRR31773546.lite SRA
SRX27135167 SRP552549 OTHER SINGLE
GSM8689658: 293T_IFIT2:FLAG+IFIT3:HAoe_HA_IP_VSV_rep2; Homo sapiens; OTHER
Sample: SRS23590710
BioProject: PRJNA1199975
BioSample: SAMN45902221
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: HEK293T
cell line: HEK293T
genotype: IFIT2:FLAG+IFIT3:HA o/e
treatment: -
geo_loc_name: missing
collection_date: missing
Original files (1)
HEK293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR31773545 41647718 3123578850 1195.57 M23_HA_IP_2_S88_L006_R1_001.fastq.gz, SRR31773545, SRR31773545.lite SRA
SRX27135168 SRP552549 OTHER SINGLE
GSM8689659: 293T_IFIT2:FLAG+IFIT3:HAoe_HA_input_VSV_rep2; Homo sapiens; OTHER
Sample: SRS23590711
BioProject: PRJNA1199975
BioSample: SAMN45902220
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: HEK293T
cell line: HEK293T
genotype: IFIT2:FLAG+IFIT3:HA o/e
treatment: -
geo_loc_name: missing
collection_date: missing
Original files (1)
HEK293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR31773544 15220760 1141557000 437.12 M23_HA_INPUT_2_S95_L006_R1_001.fastq.gz, SRR31773544, SRR31773544.lite SRA
SRX27135169 SRP552549 OTHER SINGLE
GSM8689660: 293T_IFIT2:FLAG+IFIT3:HAoe_FLAG_IP_VSV_rep2; Homo sapiens; OTHER
Sample: SRS23590712
BioProject: PRJNA1199975
BioSample: SAMN45902219
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: HEK293T
cell line: HEK293T
genotype: IFIT2:FLAG+IFIT3:HA o/e
treatment: -
geo_loc_name: missing
collection_date: missing
Original files (1)
HEK293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR31773543 40293885 3022041375 1156.47 M23_FLAG_IP_2_S89_L006_R1_001.fastq.gz, SRR31773543, SRR31773543.lite SRA
SRX27135170 SRP552549 OTHER SINGLE
GSM8689661: 293T_IFIT2:FLAG+IFIT3:HAoe_FLAG_input_VSV_rep2; Homo sapiens; OTHER
Sample: SRS23590713
BioProject: PRJNA1199975
BioSample: SAMN45902218
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: HEK293T
cell line: HEK293T
genotype: IFIT2:FLAG+IFIT3:HA o/e
treatment: -
geo_loc_name: missing
collection_date: missing
Original files (1)
HEK293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR31773542 16956317 1271723775 485.14 M23_FLAG_INPUT_2_S96_L006_R1_001.fastq.gz, SRR31773542, SRR31773542.l… SRA
SRX27135171 SRP552549 OTHER SINGLE
GSM8689662: 293T_control_HA_IP_3; Homo sapiens; OTHER
Sample: SRS23590714
BioProject: PRJNA1199975
BioSample: SAMN45902217
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: HEK293T
cell line: HEK293T
genotype: WT
treatment: -
geo_loc_name: missing
collection_date: missing
Original files (1)
HEK293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR31773541 29103450 2182758750 774.26 E_HA_IP_3_S113_L007_R1_001.fastq.gz, SRR31773541, SRR31773541.lite SRA
SRX27135172 SRP552549 OTHER SINGLE
GSM8689663: 293T_control_HA_input_3; Homo sapiens; OTHER
Sample: SRS23590715
BioProject: PRJNA1199975
BioSample: SAMN45902216
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: HEK293T
cell line: HEK293T
genotype: WT
treatment: -
geo_loc_name: missing
collection_date: missing
Original files (1)
HEK293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR31773540 13716335 1028725125 398.62 E_HA_INPUT_3_S120_L007_R1_001.fastq.gz, SRR31773540, SRR31773540.lite SRA
SRX27135173 SRP552549 OTHER SINGLE
GSM8689664: 293T_control_FLAG_IP_3; Homo sapiens; OTHER
Sample: SRS23590716
BioProject: PRJNA1199975
BioSample: SAMN45902215
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: HEK293T
cell line: HEK293T
genotype: WT
treatment: -
geo_loc_name: missing
collection_date: missing
Original files (1)
HEK293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR31773539 24193483 1814511225 693.84 E_FLAG_IP_3_S114_L007_R1_001.fastq.gz, SRR31773539, SRR31773539.lite SRA
SRX27135174 SRP552549 OTHER SINGLE
GSM8689665: 293T_control_FLAG_input_3; Homo sapiens; OTHER
Sample: SRS23590717
BioProject: PRJNA1199975
BioSample: SAMN45902214
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: HEK293T
cell line: HEK293T
genotype: WT
treatment: -
geo_loc_name: missing
collection_date: missing
Original files (1)
HEK293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR31773538 19796422 1484731650 572.74 E_FLAG_INPUT_3_S121_L007_R1_001.fastq.gz, SRR31773538, SRR31773538.li… SRA
SRX27135175 SRP552549 OTHER SINGLE
GSM8689698: MEF_IP-WT-VSV-3-B; Mus musculus; OTHER
Sample: SRS23590718
BioProject: PRJNA1199975
BioSample: SAMN45902181
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Mus musculus
Sample attributes
source_name: Mouse Embryonic Fibroblast
cell type: Mouse Embryonic Fibroblast
genotype: WT
treatment: untreated
geo_loc_name: missing
collection_date: missing
Original files (1)
Mouse Embryonic Fibroblast
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR31773537 10887695 1099657195 310.37 IP-WT-VSV-3-B_R1_001.fastq.gz, SRR31773537 SRA
SRX27135176 SRP552549 OTHER SINGLE
GSM8689699: MEF_IP-WT-VSV-INF-3B; Mus musculus; OTHER
Sample: SRS23590719
BioProject: PRJNA1199975
BioSample: SAMN45902180
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Mus musculus
Sample attributes
source_name: Mouse Embryonic Fibroblast
cell type: Mouse Embryonic Fibroblast
genotype: WT
treatment: Interferon treated
geo_loc_name: missing
collection_date: missing
Original files (1)
Mouse Embryonic Fibroblast
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR31773536 12653048 1277957848 358.97 IP-WT-VSV-INF-3B_R1_001.fastq.gz, SRR31773536 SRA
SRX27135177 SRP552549 OTHER SINGLE
GSM8689700: MEF_INPUT-2KO-INF-A; Mus musculus; OTHER
Sample: SRS23590720
BioProject: PRJNA1199975
BioSample: SAMN45902179
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Mus musculus
Sample attributes
source_name: Mouse Embryonic Fibroblast
cell type: Mouse Embryonic Fibroblast
genotype: IFIT2KO
treatment: Interferon treated
geo_loc_name: missing
collection_date: missing
Original files (1)
Mouse Embryonic Fibroblast
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR31773535 15866725 1602539225 451.24 INPUT-2KO-INF-A_R1_001.fastq.gz, SRR31773535 SRA
SRX27135178 SRP552549 OTHER SINGLE
GSM8689701: MEF_IP-2KO-INF-2A; Mus musculus; OTHER
Sample: SRS23590721
BioProject: PRJNA1199975
BioSample: SAMN45902178
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Mus musculus
Sample attributes
source_name: Mouse Embryonic Fibroblast
cell type: Mouse Embryonic Fibroblast
genotype: IFIT2KO
treatment: Interferon treated
geo_loc_name: missing
collection_date: missing
Original files (1)
Mouse Embryonic Fibroblast
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR31773534 13623472 1375970672 386.11 IP-2KO-INF-2A_R1_001.fastq.gz, SRR31773534 SRA
SRX27135179 SRP552549 OTHER SINGLE
GSM8689702: MEF_IP-2KO-INF-3A; Mus musculus; OTHER
Sample: SRS23590722
BioProject: PRJNA1199975
BioSample: SAMN45902177
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Mus musculus
Sample attributes
source_name: Mouse Embryonic Fibroblast
cell type: Mouse Embryonic Fibroblast
genotype: IFIT2KO
treatment: Interferon treated
geo_loc_name: missing
collection_date: missing
Original files (1)
Mouse Embryonic Fibroblast
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR31773533 15801371 1595938471 448.19 IP-2KO-INF-3A_R1_001.fastq.gz, SRR31773533 SRA
SRX27135180 SRP552549 OTHER SINGLE
GSM8689703: MEF_INPUT-2KO-VSV-INF-A; Mus musculus; OTHER
Sample: SRS23590723
BioProject: PRJNA1199975
BioSample: SAMN45902176
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Mus musculus
Sample attributes
source_name: Mouse Embryonic Fibroblast
cell type: Mouse Embryonic Fibroblast
genotype: IFIT2KO
treatment: Interferon treated
geo_loc_name: missing
collection_date: missing
Original files (1)
Mouse Embryonic Fibroblast
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR31773532 15708998 1586608798 446.24 INPUT-2KO-VSV-INF-A_R1_001.fastq.gz, SRR31773532 SRA
SRX27135181 SRP552549 OTHER SINGLE
GSM8689704: MEF_IP-2KO-VSV-INF-2A; Mus musculus; OTHER
Sample: SRS23590724
BioProject: PRJNA1199975
BioSample: SAMN45902175
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Mus musculus
Sample attributes
source_name: Mouse Embryonic Fibroblast
cell type: Mouse Embryonic Fibroblast
genotype: IFIT2KO
treatment: Interferon treated
geo_loc_name: missing
collection_date: missing
Original files (1)
Mouse Embryonic Fibroblast
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR31773531 13646229 1378269129 383.89 IP-2KO-VSV-INF-2A_R1_001.fastq.gz, SRR31773531 SRA
SRX27135182 SRP552549 OTHER SINGLE
GSM8689705: MEF_IP-2KO-VSV-INF-3A; Mus musculus; OTHER
Sample: SRS23590725
BioProject: PRJNA1199975
BioSample: SAMN45902174
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Mus musculus
Sample attributes
source_name: Mouse Embryonic Fibroblast
cell type: Mouse Embryonic Fibroblast
genotype: IFIT2KO
treatment: Interferon treated
geo_loc_name: missing
collection_date: missing
Original files (1)
Mouse Embryonic Fibroblast
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR31773530 12481883 1260670183 351.8 IP-2KO-VSV-INF-3A_R1_001.fastq.gz, SRR31773530 SRA
SRX27135183 SRP552549 OTHER SINGLE
GSM8689706: MEF_INPUT-2KO-INF-B; Mus musculus; OTHER
Sample: SRS23590726
BioProject: PRJNA1199975
BioSample: SAMN45902173
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Mus musculus
Sample attributes
source_name: Mouse Embryonic Fibroblast
cell type: Mouse Embryonic Fibroblast
genotype: IFIT2KO
treatment: Interferon treated
geo_loc_name: missing
collection_date: missing
Original files (1)
Mouse Embryonic Fibroblast
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR31773529 14910207 1505930907 424.45 INPUT-2KO-INF-B_R1_001.fastq.gz, SRR31773529 SRA
SRX27135184 SRP552549 OTHER SINGLE
GSM8689707: MEF_IP-2KO-INF-2B; Mus musculus; OTHER
Sample: SRS23590727
BioProject: PRJNA1199975
BioSample: SAMN45902172
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Mus musculus
Sample attributes
source_name: Mouse Embryonic Fibroblast
cell type: Mouse Embryonic Fibroblast
genotype: IFIT2KO
treatment: Interferon treated
geo_loc_name: missing
collection_date: missing
Original files (1)
Mouse Embryonic Fibroblast
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR31773528 13322299 1345552199 378.31 IP-2KO-INF-2B_R1_001.fastq.gz, SRR31773528 SRA
SRX27135185 SRP552549 OTHER SINGLE
GSM8689708: MEF_IP-2KO-INF-3B; Mus musculus; OTHER
Sample: SRS23590728
BioProject: PRJNA1199975
BioSample: SAMN45902171
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Mus musculus
Sample attributes
source_name: Mouse Embryonic Fibroblast
cell type: Mouse Embryonic Fibroblast
genotype: IFIT2KO
treatment: Interferon treated
geo_loc_name: missing
collection_date: missing
Original files (1)
Mouse Embryonic Fibroblast
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR31773527 14550821 1469632921 412.09 IP-2KO-INF-3B_R1_001.fastq.gz, SRR31773527 SRA
SRX27135186 SRP552549 OTHER SINGLE
GSM8689709: MEF_INPUT-2KO-VSV-INF-B; Mus musculus; OTHER
Sample: SRS23590729
BioProject: PRJNA1199975
BioSample: SAMN45902170
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Mus musculus
Sample attributes
source_name: Mouse Embryonic Fibroblast
cell type: Mouse Embryonic Fibroblast
genotype: IFIT2KO
treatment: Interferon treated
geo_loc_name: missing
collection_date: missing
Original files (1)
Mouse Embryonic Fibroblast
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR31773526 16079481 1624027581 456.7 INPUT-2KO-VSV-INF-B_R1_001.fastq.gz, SRR31773526 SRA
SRX27135187 SRP552549 OTHER SINGLE
GSM8689710: MEF_IP-2KO-VSV-INF-2-B; Mus musculus; OTHER
Sample: SRS23590730
BioProject: PRJNA1199975
BioSample: SAMN45902169
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Mus musculus
Sample attributes
source_name: Mouse Embryonic Fibroblast
cell type: Mouse Embryonic Fibroblast
genotype: IFIT2KO
treatment: Interferon treated
geo_loc_name: missing
collection_date: missing
Original files (1)
Mouse Embryonic Fibroblast
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR31773525 13042011 1317243111 370.05 IP-2KO-VSV-INF-2-B_R1_001.fastq.gz, SRR31773525 SRA
SRX27135188 SRP552549 OTHER SINGLE
GSM8689711: MEF_IP-2KO-VSV-INF-3-B; Mus musculus; OTHER
Sample: SRS23590731
BioProject: PRJNA1199975
BioSample: SAMN45902168
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Mus musculus
Sample attributes
source_name: Mouse Embryonic Fibroblast
cell type: Mouse Embryonic Fibroblast
genotype: IFIT2KO
treatment: Interferon treated
geo_loc_name: missing
collection_date: missing
Original files (1)
Mouse Embryonic Fibroblast
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR31773524 13211211 1334332311 373.33 IP-2KO-VSV-INF-3-B_R1_001.fastq.gz, SRR31773524 SRA
SRX27135189 SRP552549 OTHER SINGLE
GSM8689712: MEF_INPUT-3KO-INF-A; Mus musculus; OTHER
Sample: SRS23590732
BioProject: PRJNA1199975
BioSample: SAMN45902167
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Mus musculus
Sample attributes
source_name: Mouse Embryonic Fibroblast
cell type: Mouse Embryonic Fibroblast
genotype: IFIT3KO
treatment: Interferon treated
geo_loc_name: missing
collection_date: missing
Original files (1)
Mouse Embryonic Fibroblast
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR31773523 13748118 1388559918 389.18 INPUT-3KO-INF-A_R1_001.fastq.gz, SRR31773523 SRA
SRX27135190 SRP552549 OTHER SINGLE
GSM8689713: MEF_IP-3KO-INF-2-A; Mus musculus; OTHER
Sample: SRS23590733
BioProject: PRJNA1199975
BioSample: SAMN45902166
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Mus musculus
Sample attributes
source_name: Mouse Embryonic Fibroblast
cell type: Mouse Embryonic Fibroblast
genotype: IFIT3KO
treatment: Interferon treated
geo_loc_name: missing
collection_date: missing
Original files (1)
Mouse Embryonic Fibroblast
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR31773522 14949507 1509900207 422.15 IP-3KO-INF-2-A_R1_001.fastq.gz, SRR31773522 SRA
SRX27135191 SRP552549 OTHER SINGLE
GSM8689666: 293T_IFIT1:FLAGoe_FLAG_IP_3; Homo sapiens; OTHER
Sample: SRS23590734
BioProject: PRJNA1199975
BioSample: SAMN45902213
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: HEK293T
cell line: HEK293T
genotype: IFIT1:FLAG o/e
treatment: -
geo_loc_name: missing
collection_date: missing
Original files (1)
HEK293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR31773521 23162868 1737215100 654.32 H1_IP_3_S115_L007_R1_001.fastq.gz, SRR31773521, SRR31773521.lite SRA
SRX27135192 SRP552549 OTHER SINGLE
GSM8689667: 293T_IFIT1:FLAGoe_FLAG_input_3; Homo sapiens; OTHER
Sample: SRS23590735
BioProject: PRJNA1199975
BioSample: SAMN45902212
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: HEK293T
cell line: HEK293T
genotype: IFIT1:FLAG o/e
treatment: -
geo_loc_name: missing
collection_date: missing
Original files (1)
HEK293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR31773520 15117017 1133776275 440.02 H1_INPUT_3_S122_L007_R1_001.fastq.gz, SRR31773520, SRR31773520.lite SRA
SRX27135193 SRP552549 OTHER SINGLE
GSM8689668: 293T_IFIT2:FLAGoe_FLAG_IP_3; Homo sapiens; OTHER
Sample: SRS23590736
BioProject: PRJNA1199975
BioSample: SAMN45902211
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: HEK293T
cell line: HEK293T
genotype: IFIT2:FLAG o/e
treatment: -
geo_loc_name: missing
collection_date: missing
Original files (1)
HEK293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR31773519 16083935 1206295125 470.81 M2_IP_3_S116_L007_R1_001.fastq.gz, SRR31773519, SRR31773519.lite SRA
SRX27135194 SRP552549 OTHER SINGLE
GSM8689669: 293T_IFIT2:FLAGoe_FLAG_input_3; Homo sapiens; OTHER
Sample: SRS23590737
BioProject: PRJNA1199975
BioSample: SAMN45902210
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: HEK293T
cell line: HEK293T
genotype: IFIT2:FLAG o/e
treatment: -
geo_loc_name: missing
collection_date: missing
Original files (1)
HEK293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR31773518 17328206 1299615450 504.03 M2_INPUT_3_S123_L007_R1_001.fastq.gz, SRR31773518, SRR31773518.lite SRA
SRX27135195 SRP552549 OTHER SINGLE
GSM8689670: 293T_IFIT3:HAoe_HA_IP_3; Homo sapiens; OTHER
Sample: SRS23590738
BioProject: PRJNA1199975
BioSample: SAMN45902209
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: HEK293T
cell line: HEK293T
genotype: IFIT3:HA o/e
treatment: -
geo_loc_name: missing
collection_date: missing
Original files (1)
HEK293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR31773517 19349389 1451204175 570.26 M3_IP_3_S117_L007_R1_001.fastq.gz, SRR31773517, SRR31773517.lite SRA
SRX27135196 SRP552549 OTHER SINGLE
GSM8689671: 293T_IFIT3:HAoe_HA_input_3; Homo sapiens; OTHER
Sample: SRS23590739
BioProject: PRJNA1199975
BioSample: SAMN45902208
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: HEK293T
cell line: HEK293T
genotype: IFIT3:HA o/e
treatment: -
geo_loc_name: missing
collection_date: missing
Original files (1)
HEK293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR31773516 14087751 1056581325 408.76 M3_INPUT_3_S124_L007_R1_001.fastq.gz, SRR31773516, SRR31773516.lite SRA
SRX27135197 SRP552549 OTHER SINGLE
GSM8689672: 293T_IFIT2:FLAG+IFIT3:HAoe_HA_IP_3; Homo sapiens; OTHER
Sample: SRS23590740
BioProject: PRJNA1199975
BioSample: SAMN45902207
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: HEK293T
cell line: HEK293T
genotype: IFIT2:FLAG+IFIT3:HA o/e
treatment: -
geo_loc_name: missing
collection_date: missing
Original files (1)
HEK293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR31773515 22241714 1668128550 646.38 M23_HA_IP_3_S118_L007_R1_001.fastq.gz, SRR31773515, SRR31773515.lite SRA
SRX27135198 SRP552549 OTHER SINGLE
GSM8689673: 293T_IFIT2:FLAG+IFIT3:HAoe_HA_input_3; Homo sapiens; OTHER
Sample: SRS23590741
BioProject: PRJNA1199975
BioSample: SAMN45902206
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: HEK293T
cell line: HEK293T
genotype: IFIT2:FLAG+IFIT3:HA o/e
treatment: -
geo_loc_name: missing
collection_date: missing
Original files (1)
HEK293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR31773514 14102060 1057654500 408.45 M23_HA_INPUT_3_S125_L007_R1_001.fastq.gz, SRR31773514, SRR31773514.li… SRA
SRX27135199 SRP552549 OTHER SINGLE
GSM8689674: 293T_IFIT2:FLAG+IFIT3:HAoe_FLAG_IP_3; Homo sapiens; OTHER
Sample: SRS23590742
BioProject: PRJNA1199975
BioSample: SAMN45902205
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: HEK293T
cell line: HEK293T
genotype: IFIT2:FLAG+IFIT3:HA o/e
treatment: -
geo_loc_name: missing
collection_date: missing
Original files (1)
HEK293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR31773513 21616323 1621224225 624.88 M23_FLAG_IP_3_S119_L007_R1_001.fastq.gz, SRR31773513, SRR31773513.lite SRA
SRX27135200 SRP552549 OTHER SINGLE
GSM8689675: 293T_IFIT2:FLAG+IFIT3:HAoe_FLAG_input_3; Homo sapiens; OTHER
Sample: SRS23590743
BioProject: PRJNA1199975
BioSample: SAMN45902204
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: HEK293T
cell line: HEK293T
genotype: IFIT2:FLAG+IFIT3:HA o/e
treatment: -
geo_loc_name: missing
collection_date: missing
Original files (1)
HEK293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR31773512 16343614 1225771050 475.89 M23_FLAG_INPUT_3_S126_L007_R1_001.fastq.gz, SRR31773512, SRR31773512.… SRA
SRX27135201 SRP552549 OTHER SINGLE
GSM8689676: MEF_INPUT-WT-NO-INF-A; Mus musculus; OTHER
Sample: SRS23590744
BioProject: PRJNA1199975
BioSample: SAMN45902203
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Mus musculus
Sample attributes
source_name: Mouse Embryonic Fibroblast
cell type: Mouse Embryonic Fibroblast
genotype: WT
treatment: untreated
geo_loc_name: missing
collection_date: missing
Original files (1)
Mouse Embryonic Fibroblast
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR31773511 13142093 1327351393 371.88 INPUT-WT-NO-INF-A_R1_001.fastq.gz, SRR31773511 SRA
SRX27135202 SRP552549 OTHER SINGLE
GSM8689677: MEF_IP-WT-NO-INF-2-A; Mus musculus; OTHER
Sample: SRS23590745
BioProject: PRJNA1199975
BioSample: SAMN45902202
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Mus musculus
Sample attributes
source_name: Mouse Embryonic Fibroblast
cell type: Mouse Embryonic Fibroblast
genotype: WT
treatment: untreated
geo_loc_name: missing
collection_date: missing
Original files (1)
Mouse Embryonic Fibroblast
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR31773510 13488594 1362347994 383.07 IP-WT-NO-INF-2-A_R1_001.fastq.gz, SRR31773510 SRA
SRX27135203 SRP552549 OTHER SINGLE
GSM8689678: MEF_INPUT-WT-INF-A; Mus musculus; OTHER
Sample: SRS23590746
BioProject: PRJNA1199975
BioSample: SAMN45902201
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Mus musculus
Sample attributes
source_name: Mouse Embryonic Fibroblast
cell type: Mouse Embryonic Fibroblast
genotype: WT
treatment: Interferon treated
geo_loc_name: missing
collection_date: missing
Original files (1)
Mouse Embryonic Fibroblast
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR31773509 12816670 1294483670 362.96 INPUT-WT-INF-A_R1_001.fastq.gz, SRR31773509 SRA
SRX27135204 SRP552549 OTHER SINGLE
GSM8689679: MEF_IP-WT-INF-2-A; Mus musculus; OTHER
Sample: SRS23590747
BioProject: PRJNA1199975
BioSample: SAMN45902200
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Mus musculus
Sample attributes
source_name: Mouse Embryonic Fibroblast
cell type: Mouse Embryonic Fibroblast
genotype: WT
treatment: Interferon treated
geo_loc_name: missing
collection_date: missing
Original files (1)
Mouse Embryonic Fibroblast
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR31773508 14407464 1455153864 411.1 IP-WT-INF-2-A_R1_001.fastq.gz, SRR31773508, SRR31773508.lite SRA
SRX27135205 SRP552549 OTHER SINGLE
GSM8689680: MEF_INPUT-WT-VSV-A; Mus musculus; OTHER
Sample: SRS23590748
BioProject: PRJNA1199975
BioSample: SAMN45902199
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Mus musculus
Sample attributes
source_name: Mouse Embryonic Fibroblast
cell type: Mouse Embryonic Fibroblast
genotype: WT
treatment: untreated
geo_loc_name: missing
collection_date: missing
Original files (1)
Mouse Embryonic Fibroblast
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR31773507 12529551 1265484651 356.53 INPUT-WT-VSV-A_R1_001.fastq.gz, SRR31773507 SRA
SRX27135206 SRP552549 OTHER SINGLE
GSM8689681: MEF_IP-WT-VSV-2-A; Mus musculus; OTHER
Sample: SRS23590749
BioProject: PRJNA1199975
BioSample: SAMN45902198
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Mus musculus
Sample attributes
source_name: Mouse Embryonic Fibroblast
cell type: Mouse Embryonic Fibroblast
genotype: WT
treatment: untreated
geo_loc_name: missing
collection_date: missing
Original files (1)
Mouse Embryonic Fibroblast
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR31773506 16334027 1649736727 461.6 IP-WT-VSV-2-A_R1_001.fastq.gz, SRR31773506 SRA
SRX27135207 SRP552549 OTHER SINGLE
GSM8689682: MEF_INPUT-WT-VSV-INF-A; Mus musculus; OTHER
Sample: SRS23590750
BioProject: PRJNA1199975
BioSample: SAMN45902197
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Mus musculus
Sample attributes
source_name: Mouse Embryonic Fibroblast
cell type: Mouse Embryonic Fibroblast
genotype: WT
treatment: Interferon treated
geo_loc_name: missing
collection_date: missing
Original files (1)
Mouse Embryonic Fibroblast
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR31773505 11267881 1138055981 321.25 INPUT-WT-VSV-INF-A_R1_001.fastq.gz, SRR31773505 SRA
SRX27135208 SRP552549 OTHER SINGLE
GSM8689683: MEF_IP-WT-VSV-INF-2-A; Mus musculus; OTHER
Sample: SRS23590751
BioProject: PRJNA1199975
BioSample: SAMN45902196
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Mus musculus
Sample attributes
source_name: Mouse Embryonic Fibroblast
cell type: Mouse Embryonic Fibroblast
genotype: WT
treatment: Interferon treated
geo_loc_name: missing
collection_date: missing
Original files (1)
Mouse Embryonic Fibroblast
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR31773504 12871623 1300033923 364.82 IP-WT-VSV-INF-2-A_R1_001.fastq.gz, SRR31773504 SRA
SRX27135209 SRP552549 OTHER SINGLE
GSM8689684: MEF_IP-WT-NO-INF-3-A; Mus musculus; OTHER
Sample: SRS23590752
BioProject: PRJNA1199975
BioSample: SAMN45902195
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Mus musculus
Sample attributes
source_name: Mouse Embryonic Fibroblast
cell type: Mouse Embryonic Fibroblast
genotype: WT
treatment: untreated
geo_loc_name: missing
collection_date: missing
Original files (1)
Mouse Embryonic Fibroblast
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR31773503 13648199 1378468099 387.81 IP-WT-NO-INF-3-A_R1_001.fastq.gz, SRR31773503 SRA
SRX27135210 SRP552549 OTHER SINGLE
GSM8689685: MEF_IP-WT-INF-3-A; Mus musculus; OTHER
Sample: SRS23590753
BioProject: PRJNA1199975
BioSample: SAMN45902194
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Mus musculus
Sample attributes
source_name: Mouse Embryonic Fibroblast
cell type: Mouse Embryonic Fibroblast
genotype: WT
treatment: Interferon treated
geo_loc_name: missing
collection_date: missing
Original files (1)
Mouse Embryonic Fibroblast
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR31773502 16510204 1667530604 467.9 IP-WT-INF-3-A_R1_001.fastq.gz, SRR31773502 SRA
SRX27135211 SRP552549 OTHER SINGLE
GSM8689686: MEF_IP-WT-VSV-3-A; Mus musculus; OTHER
Sample: SRS23590754
BioProject: PRJNA1199975
BioSample: SAMN45902193
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Mus musculus
Sample attributes
source_name: Mouse Embryonic Fibroblast
cell type: Mouse Embryonic Fibroblast
genotype: WT
treatment: untreated
geo_loc_name: missing
collection_date: missing
Original files (1)
Mouse Embryonic Fibroblast
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR31773501 12739522 1286691722 360.37 IP-WT-VSV-3-A_R1_001.fastq.gz, SRR31773501 SRA
SRX27135212 SRP552549 OTHER SINGLE
GSM8689687: MEF_IP-WT-VSV-INF-3-A; Mus musculus; OTHER
Sample: SRS23590755
BioProject: PRJNA1199975
BioSample: SAMN45902192
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Mus musculus
Sample attributes
source_name: Mouse Embryonic Fibroblast
cell type: Mouse Embryonic Fibroblast
genotype: WT
treatment: Interferon treated
geo_loc_name: missing
collection_date: missing
Original files (1)
Mouse Embryonic Fibroblast
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR31773500 14146101 1428756201 400.46 IP-WT-VSV-INF-3-A_R1_001.fastq.gz, SRR31773500 SRA
SRX27135213 SRP552549 OTHER SINGLE
GSM8689688: MEF_INPUT-WT-NO-INF-B; Mus musculus; OTHER
Sample: SRS23590756
BioProject: PRJNA1199975
BioSample: SAMN45902191
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Mus musculus
Sample attributes
source_name: Mouse Embryonic Fibroblast
cell type: Mouse Embryonic Fibroblast
genotype: WT
treatment: untreated
geo_loc_name: missing
collection_date: missing
Original files (1)
Mouse Embryonic Fibroblast
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR31773499 14301189 1444420089 407.01 INPUT-WT-NO-INF-B_R1_001.fastq.gz, SRR31773499 SRA
SRX27135214 SRP552549 OTHER SINGLE
GSM8689689: MEF_IP-WT-NO-INF-2-B; Mus musculus; OTHER
Sample: SRS23590757
BioProject: PRJNA1199975
BioSample: SAMN45902190
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Mus musculus
Sample attributes
source_name: Mouse Embryonic Fibroblast
cell type: Mouse Embryonic Fibroblast
genotype: WT
treatment: untreated
geo_loc_name: missing
collection_date: missing
Original files (1)
Mouse Embryonic Fibroblast
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR31773498 14492027 1463694727 411.82 IP-WT-NO-INF-2-B_R1_001.fastq.gz, SRR31773498 SRA
SRX27135215 SRP552549 OTHER SINGLE
GSM8689690: MEF_INPUT-WT-INF-B; Mus musculus; OTHER
Sample: SRS23590758
BioProject: PRJNA1199975
BioSample: SAMN45902189
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Mus musculus
Sample attributes
source_name: Mouse Embryonic Fibroblast
cell type: Mouse Embryonic Fibroblast
genotype: WT
treatment: Interferon treated
geo_loc_name: missing
collection_date: missing
Original files (1)
Mouse Embryonic Fibroblast
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR31773497 13745183 1388263483 390.44 INPUT-WT-INF-B_R1_001.fastq.gz, SRR31773497 SRA
SRX27135216 SRP552549 OTHER SINGLE
GSM8689691: MEF_IP-WT-INF-2-B; Mus musculus; OTHER
Sample: SRS23590759
BioProject: PRJNA1199975
BioSample: SAMN45902188
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Mus musculus
Sample attributes
source_name: Mouse Embryonic Fibroblast
cell type: Mouse Embryonic Fibroblast
genotype: WT
treatment: Interferon treated
geo_loc_name: missing
collection_date: missing
Original files (1)
Mouse Embryonic Fibroblast
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR31773496 15201303 1535331603 431.1 IP-WT-INF-2-B_R1_001.fastq.gz, SRR31773496 SRA
SRX27135217 SRP552549 OTHER SINGLE
GSM8689692: MEF_INPUT-WT-VSV-B; Mus musculus; OTHER
Sample: SRS23590760
BioProject: PRJNA1199975
BioSample: SAMN45902187
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Mus musculus
Sample attributes
source_name: Mouse Embryonic Fibroblast
cell type: Mouse Embryonic Fibroblast
genotype: WT
treatment: untreated
geo_loc_name: missing
collection_date: missing
Original files (1)
Mouse Embryonic Fibroblast
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR31773495 11147395 1125886895 317.93 INPUT-WT-VSV-B_R1_001.fastq.gz, SRR31773495 SRA
SRX27135218 SRP552549 OTHER SINGLE
GSM8689693: MEF_IP-WT-VSV-2-B; Mus musculus; OTHER
Sample: SRS23590761
BioProject: PRJNA1199975
BioSample: SAMN45902186
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Mus musculus
Sample attributes
source_name: Mouse Embryonic Fibroblast
cell type: Mouse Embryonic Fibroblast
genotype: WT
treatment: untreated
geo_loc_name: missing
collection_date: missing
Original files (1)
Mouse Embryonic Fibroblast
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR31773494 13733909 1387124809 389.34 IP-WT-VSV-2-B_R1_001.fastq.gz, SRR31773494 SRA
SRX27135219 SRP552549 OTHER SINGLE
GSM8689694: MEF_INPUT-WT-VSV-INF-B; Mus musculus; OTHER
Sample: SRS23590762
BioProject: PRJNA1199975
BioSample: SAMN45902185
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Mus musculus
Sample attributes
source_name: Mouse Embryonic Fibroblast
cell type: Mouse Embryonic Fibroblast
genotype: WT
treatment: Interferon treated
geo_loc_name: missing
collection_date: missing
Original files (1)
Mouse Embryonic Fibroblast
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR31773493 10617394 1072356794 301.57 INPUT-WT-VSV-INF-B_R1_001.fastq.gz, SRR31773493 SRA
SRX27135220 SRP552549 OTHER SINGLE
GSM8689695: MEF_IP-WT-VSV-INF-2-B; Mus musculus; OTHER
Sample: SRS23590763
BioProject: PRJNA1199975
BioSample: SAMN45902184
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Mus musculus
Sample attributes
source_name: Mouse Embryonic Fibroblast
cell type: Mouse Embryonic Fibroblast
genotype: WT
treatment: Interferon treated
geo_loc_name: missing
collection_date: missing
Original files (1)
Mouse Embryonic Fibroblast
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR31773492 14035448 1417580248 397.24 IP-WT-VSV-INF-2-B_R1_001.fastq.gz, SRR31773492 SRA
SRX27135221 SRP552549 OTHER SINGLE
GSM8689696: MEF_IP-WT-NO-INF-3-B; Mus musculus; OTHER
Sample: SRS23590764
BioProject: PRJNA1199975
BioSample: SAMN45902183
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Mus musculus
Sample attributes
source_name: Mouse Embryonic Fibroblast
cell type: Mouse Embryonic Fibroblast
genotype: WT
treatment: untreated
geo_loc_name: missing
collection_date: missing
Original files (1)
Mouse Embryonic Fibroblast
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR31773491 12385390 1250924390 352.01 IP-WT-NO-INF-3-B_R1_001.fastq.gz, SRR31773491 SRA
SRX27135222 SRP552549 OTHER SINGLE
GSM8689697: MEF_IP-WT-INF-3-B; Mus musculus; OTHER
Sample: SRS23590765
BioProject: PRJNA1199975
BioSample: SAMN45902182
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Mus musculus
Sample attributes
source_name: Mouse Embryonic Fibroblast
cell type: Mouse Embryonic Fibroblast
genotype: WT
treatment: Interferon treated
geo_loc_name: missing
collection_date: missing
Original files (1)
Mouse Embryonic Fibroblast
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR31773490 12436348 1256071148 357.53 IP-WT-INF-3-B_R1_001.fastq.gz, SRR31773490, SRR31773490.lite SRA
SRX27135223 SRP552549 OTHER SINGLE
GSM8689714: MEF_IP-3KO-INF-3-A; Mus musculus; OTHER
Sample: SRS23590766
BioProject: PRJNA1199975
BioSample: SAMN45902165
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Mus musculus
Sample attributes
source_name: Mouse Embryonic Fibroblast
cell type: Mouse Embryonic Fibroblast
genotype: IFIT3KO
treatment: Interferon treated
geo_loc_name: missing
collection_date: missing
Original files (1)
Mouse Embryonic Fibroblast
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR31773489 17554629 1773017529 493.6 IP-3KO-INF-3-A_R1_001.fastq.gz, SRR31773489 SRA
SRX27135224 SRP552549 OTHER SINGLE
GSM8689715: MEF_INPUT-3KO-VSV-INF-A; Mus musculus; OTHER
Sample: SRS23590767
BioProject: PRJNA1199975
BioSample: SAMN45902164
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Mus musculus
Sample attributes
source_name: Mouse Embryonic Fibroblast
cell type: Mouse Embryonic Fibroblast
genotype: IFIT3KO
treatment: Interferon treated
geo_loc_name: missing
collection_date: missing
Original files (1)
Mouse Embryonic Fibroblast
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR31773488 12217325 1233949825 347.13 INPUT-3KO-VSV-INF-A_R1_001.fastq.gz, SRR31773488 SRA
SRX27135225 SRP552549 OTHER SINGLE
GSM8689716: MEF_IP-3KO-VSV-INF-2-A; Mus musculus; OTHER
Sample: SRS23590768
BioProject: PRJNA1199975
BioSample: SAMN45902163
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Mus musculus
Sample attributes
source_name: Mouse Embryonic Fibroblast
cell type: Mouse Embryonic Fibroblast
genotype: IFIT3KO
treatment: Interferon treated
geo_loc_name: missing
collection_date: missing
Original files (1)
Mouse Embryonic Fibroblast
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR31773487 15434451 1558879551 434.33 IP-3KO-VSV-INF-2-A_R1_001.fastq.gz, SRR31773487 SRA
SRX27135226 SRP552549 OTHER SINGLE
GSM8689717: MEF_IP-3KO-VSV-INF-3-A; Mus musculus; OTHER
Sample: SRS23590769
BioProject: PRJNA1199975
BioSample: SAMN45902162
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Mus musculus
Sample attributes
source_name: Mouse Embryonic Fibroblast
cell type: Mouse Embryonic Fibroblast
genotype: IFIT3KO
treatment: Interferon treated
geo_loc_name: missing
collection_date: missing
Original files (1)
Mouse Embryonic Fibroblast
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR31773486 15573414 1572914814 437.97 IP-3KO-VSV-INF-3-A_R1_001.fastq.gz, SRR31773486 SRA
SRX27135227 SRP552549 OTHER SINGLE
GSM8689718: MEF_IP-3KO-INF-3-B; Mus musculus; OTHER
Sample: SRS23590770
BioProject: PRJNA1199975
BioSample: SAMN45902161
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Mus musculus
Sample attributes
source_name: Mouse Embryonic Fibroblast
cell type: Mouse Embryonic Fibroblast
genotype: IFIT3KO
treatment: Interferon treated
geo_loc_name: missing
collection_date: missing
Original files (1)
Mouse Embryonic Fibroblast
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR31773485 16055251 1621580351 451.66 IP-3KO-INF-3-B_R1_001.fastq.gz, SRR31773485 SRA
SRX27135228 SRP552549 OTHER SINGLE
GSM8689719: MEF_INPUT-3KO-VSV-INF-B; Mus musculus; OTHER
Sample: SRS23590771
BioProject: PRJNA1199975
BioSample: SAMN45902160
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Mus musculus
Sample attributes
source_name: Mouse Embryonic Fibroblast
cell type: Mouse Embryonic Fibroblast
genotype: IFIT3KO
treatment: Interferon treated
geo_loc_name: missing
collection_date: missing
Original files (1)
Mouse Embryonic Fibroblast
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR31773484 11810061 1192816161 337.19 INPUT-3KO-VSV-INF-B_R1_001.fastq.gz, SRR31773484, SRR31773484.lite SRA
SRX27135229 SRP552549 OTHER SINGLE
GSM8689720: MEF_IP-3KO-VSV-INF-2-B; Mus musculus; OTHER
Sample: SRS23590772
BioProject: PRJNA1199975
BioSample: SAMN45902159
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Mus musculus
Sample attributes
source_name: Mouse Embryonic Fibroblast
cell type: Mouse Embryonic Fibroblast
genotype: IFIT3KO
treatment: Interferon treated
geo_loc_name: missing
collection_date: missing
Original files (1)
Mouse Embryonic Fibroblast
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR31773483 16424841 1658908941 461.71 IP-3KO-VSV-INF-2-B_R1_001.fastq.gz, SRR31773483 SRA

Linked Publications (3)

The IFIT2-IFIT3 antiviral complex targets short 5' untranslated regions on viral mRNAs for translation inhibition.
Nature microbiology · 2025
Short 5' UTRs serve as a marker for viral mRNA translation inhibition by the IFIT2-IFIT3 antiviral complex.
bioRxiv : the preprint server for biology · 2025
Short 5' UTRs serve as a marker for viral mRNA translation inhibition by the IFIT2-IFIT3 antiviral complex.
bioRxiv : the preprint server for biology · 2025

Data Files (91)

Accession File Name Stored Type Output Type Mapping Assembly Size Download
— E_FLAG_INPUT_1_S72_L005_R1_001.fastq.gz OTHER 490.4 MB link
— E_FLAG_INPUT_2_S91_L006_R1_001.fastq.gz OTHER 443.8 MB link
— E_FLAG_INPUT_3_S121_L007_R1_001.fastq.gz OTHER 572.7 MB link
— E_FLAG_IP_1_S65_L005_R1_001.fastq.gz OTHER 531.1 MB link
— E_FLAG_IP_2_S85_L006_R1_001.fastq.gz OTHER 484.0 MB link
— E_FLAG_IP_3_S114_L007_R1_001.fastq.gz OTHER 693.8 MB link
— E_HA_INPUT_1_S71_L005_R1_001.fastq.gz OTHER 437.4 MB link
— E_HA_INPUT_2_S90_L006_R1_001.fastq.gz OTHER 322.0 MB link
— E_HA_INPUT_3_S120_L007_R1_001.fastq.gz OTHER 398.6 MB link
— E_HA_IP_1_S64_L005_R1_001.fastq.gz OTHER 445.4 MB link
— E_HA_IP_2_S84_L006_R1_001.fastq.gz OTHER 354.3 MB link
— E_HA_IP_3_S113_L007_R1_001.fastq.gz OTHER 774.3 MB link
— H1_INPUT_1_S73_L005_R1_001.fastq.gz OTHER 430.1 MB link
— H1_INPUT_2_S92_L006_R1_001.fastq.gz OTHER 372.4 MB link
— H1_INPUT_3_S122_L007_R1_001.fastq.gz OTHER 440.0 MB link
— H1_IP_1_S66_L005_R1_001.fastq.gz OTHER 555.0 MB link
— H1_IP_1_S66_L006_R1_001.fastq.gz OTHER 409.6 MB link
— H1_IP_3_S115_L007_R1_001.fastq.gz OTHER 654.3 MB link
— INPUT-2KO-INF-A_R1_001.fastq.gz OTHER 451.2 MB link
— INPUT-2KO-INF-B_R1_001.fastq.gz OTHER 424.4 MB link
— INPUT-2KO-VSV-INF-A_R1_001.fastq.gz OTHER 446.2 MB link
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