GSE205942
GSE GEOSmall intestine and colon tissue-resident memory CD8+ T cells exhibit transcriptional, epigenetic, and functional heterogeneity in concert with differential dependence on Eomesodermin
Organism:
Mus musculus
Platform:
GPL24247
Samples:
20
Experiment Types:
Genome binding/occupancy profiling by high throughput sequencing
Other
Submitted:
Jun 12 2022
Last Updated:
Apr 11 2025
Status:
Public on Dec 28 2022
Contact:
John,,Chang (UC San Diego)
Relations
SuperSeries of: GSE205549
SuperSeries of: GSE205941
BioProject: https://www.ncbi.nlm.nih.gov/bioproject/PRJNA848394
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall Design
Refer to individual Series
Analysis (3 steps)
View Data Processing
Processing steps for GSE205942
- Cell Ranger ATAC (v6.0.1) was used to process sequencing information and single cell barcodes.
- Cellranger outputs were analyzed in R using Signac (v1.6.0)
- Annotation, quality control, dimensional reduction, and UMAPcreationwerecompleted using the standard Signac workflow.
Supplementary Files (1)
GSE205942_RAW.tar
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Dataset Citations (1)
Small intestine and colon tissue-resident memory CD8<sup>+</sup> T cells exhibit molecular heterogeneity and differential dependence on Eomes.
PMID 36580919
· 2023
· Immunity
Yun Hsuan Lin, Han G Duong, Abigail E Limary, Eleanor S Kim, Paul Hsu, Shefali A Patel, William H Wong, Cynthia S Indralingam, Yi Chia Liu, Priscilla Yao, Natalie R Chiang, Sara A Vandenburgh, Taylor R Anderson, Jocelyn G Olvera, Amir Ferry, Kennidy K Takehara, Wenhao Jin, Matthew S Tsai, Gene W Yeo, Ananda W Goldrath, John T Chang