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GSE101938

GSE GEO
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Variation in single-nucleotide sensitivity of eCLIP derived from reverse transcription conditions

Organism: Homo sapiens
Platform: GPL20301
Samples: 62
Experiment Types:
Other
Submitted: Jul 27 2017
Last Updated: Jul 25 2021
Status: Public on Aug 10 2017
Contact: Gene,,Yeo (UCSD)

Relations

BioProject: https://www.ncbi.nlm.nih.gov/bioproject/PRJNA395978 SRA: https://www.ncbi.nlm.nih.gov/sra?term=SRP113666

Summary

Crosslinking and immunoprecipitation (CLIP) followed by high-throughput sequencing identifies the binding sites of RNA binding proteins on RNAs. The covalent RNA-amino acid adducts produced by UV irradiation can cause premature reverse transcription termination, which may decrease overall cDNA yield but is exploited in state of the art CLIP methods to identify these crosslink sites at single-nucleotide resolution. Here, we show the ratio of read-through versus termination is highly dependent on the identity of the reverse transcriptase enzyme as well as on buffer conditions used. Commonly used enzymes, including Superscript III and AffinityScript, show high termination rates in standard magnesium buffer conditions, but show a single base difference in the position of termination for TARDBP motifs. In contrast, manganese-containing buffer promoted read-through at the adduct site. These results validate the use of standard enzymes and suggest that alternative enzyme and buffer choices for particularly challenging samples that contain extensive RNA adducts or other modifications that inhibit standard reverse transcription.

Overall Design

eCLIP-seq in HeK293T Cells

Analysis (33 steps)

View Data Processing
Processing steps for GSE101938
  1. Library strategy: eCLIP-seq
  2. Takes output from raw files.
  3. Run to trim off both 5’ and 3’ adapters on both reads.
  4. Command: quality-cutoff 6 -m 18 -a NNNNNAGATCGGAAGAGCACACGTCTGAACTCCAGTCAC -g CTTCCGATCTACAAGTT -g CTTCCGATCTTGGTCCT -A AACTTGTAGATCGGA -A AGGACCAAGATCGGA -A ACTTGTAGATCGGAA -A GGACCAAGATCGGAA -A CTTGT AGATCGGAAG -A GACCAAGATCGGAAG -A TTGTAGATCGGAAGA -A ACCAAGATCGGAAGA -A TGTAGATCGGAAGAG -A CCAAGATCGGAAGAG -A GTAGATCGGAAGAGC -A CAAGATCGGAAGAGC -A TAGATCGGAAGAGCG -A AAGATCGGAAGAGCG -A AGATCGGAAGAGCGT -A GATCGGAAGAGCGTC -A ATCGGAAGAGCGTCG -A TCGGAAGAGCGTCGT -A CGGAAGAGCGTCGTG -A GGAAGAGCGTCGTGT -o /full/path/to/files/file_R1.C01.fastq.gz.adapterTrim.fastq.gz -p /full/path/to/files/file_R2.C01.fastq.gz.adapterTrim.fastq.gz /full/path/to/files/file_R1.C01.fastq.gz /full/path/to/files/file_R2.C01.fastq.gz > /full/path/to/files/file_R1.C01.fastq.gz.adapterTrim.metrics
  5. Takes output from cutadapt round 1.
  6. Run to trim off the 3’ adapters on read 2, to control for double ligation events.
  7. Command: cutadapt -f fastq --match-read-wildcards --times 1 -e 0.1 -O 5 --quality-cutoff 6 -m 18 -A AACTTGTAGATCGGA -A AGGACCAAGATCGGA -A ACTTGTAGATCGGAA -A GGACCAAGATCGGAA -A CTTGTAGATCGGAAG -A GACCAAGATCGGAAG -A TTGTAGATCGGAAGA -A ACCAAGATCGGAAGA -A TGTAGATCGGAAGAG -A CCAAGATCGGAAGAG -A GTAGATCGGAAGAGC -A CAAGATCGGAAGAGC -A TAGATCGGAAGAGCG -A AAGATCGGAAGAGCG -A AGATCGGAAGAGCGT -A GATCGGAAGAGCGTC -A ATCGGAAGAGCGTCG -A TCGGAAGAGCGTCGT -A CGGAAGAGCGTCGTG -A GGAAGAGCGTCGTGT -o /full/path/to/files/file_R1.C01.fastq.gz.adapterTrim.round2.fastq.gz -p /full/path/to/files/file_R2.C01.fastq.gz.adapterTrim.round2.fastq.gz /full/path/to/files/file_R1.C01.fastq.gz.adapterTrim.fastq.gz /full/path/to/files/file_R2.C01.fastq.gz.adapterTrim.fastq.gz > /full/path/to/files/file_R1.C01.fastq.gz.adapterTrim.round2.metrics
  8. Takes output from cutadapt round 2.
Showing first 8 steps.

Supplementary Files (1)

GSE101938_RAW.tar Download
GEO Samples (62)
GSM2719136 GSM2719137 GSM2719138 GSM2719139 GSM2719140 GSM2719141 GSM2719142 GSM2719143 GSM2719144 GSM2719145 GSM2719146 GSM2719147 GSM2719148 GSM2719149 GSM2719150 GSM2719151 GSM2719152 GSM2719153 GSM2719154 GSM2719155 GSM2719156 GSM2719157 GSM2719158 GSM2719159 GSM2719160 GSM2719161 GSM2719162 GSM2719163 GSM2719164 GSM2719165 GSM2719166 GSM2719167 GSM2719168 GSM2719169 GSM2719170 GSM2719171 GSM2719172 GSM2719173 GSM2719174 GSM2719175 GSM2719176 GSM2719177 GSM2719178 GSM2719179 GSM2719180 GSM2719181 GSM2719182 GSM2719183 GSM2719184 GSM2719185 GSM2719186 GSM2719187 GSM2719188 GSM2719189 GSM2719190 GSM2719191 GSM2719192 GSM2719193 GSM2719194 GSM2719195 GSM2719196 GSM2719197

Dataset Citations (1)

Variation in single-nucleotide sensitivity of eCLIP derived from reverse transcription conditions.
PMID 28790018 · 2017 · Methods (San Diego, Calif.)
Eric L Van Nostrand, Alexander A Shishkin, Gabriel A Pratt, Thai B Nguyen, Gene W Yeo

SRA Experiments (62) and Runs (102)

Total: 24154 MB
SRX3041635 SRP113666 OTHER PAIRED
GSM2719136: AS_1_MMLVMn_IP_RBFOX2; Homo sapiens; OTHER
Sample: SRS2389648
BioProject: PRJNA395978
BioSample: SAMN07418688
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: 293T
cell line: 293T
antibody: RBFOX2
antibody manufacturer: Bethyl
reverse transcriptase: M-MLV
reverse transcriptase buffer: Manganese
Original files (1)
293T
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR5874555 3156217 320218933 141.29 AS_1_MMLVMn_IP_S1_L001_R1_001.C01_AS_1_MMLVMn_IP_RBFOX2.randomer.fast… SRA
SRR5874556 2608033 264834982 120.07 AS_1_MMLVMn_IP_S1_L001_R1_001.D08fixed_AS_1_MMLVMn_IP_RBFOX2.randomer… SRA
SRX3041636 SRP113666 OTHER PAIRED
GSM2719137: AS_1_MMLVMn_IP_RBFOX2_input; Homo sapiens; OTHER
Sample: SRS2389649
BioProject: PRJNA395978
BioSample: SAMN07418687
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: 293T
cell line: 293T
antibody: none (input)
antibody manufacturer: input
reverse transcriptase: M-MLV
reverse transcriptase buffer: Manganese
Original files (1)
293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR5874557 11571756 1248146370 567.15 AS_11_MMLVMn_input_S10_L001_R1_001.unassigned.randomer.fastq.gz, AS_1… SRA
SRX3041637 SRP113666 OTHER PAIRED
GSM2719138: AS_2_SSIIMn_IP_RBFOX2; Homo sapiens; OTHER
Sample: SRS2389650
BioProject: PRJNA395978
BioSample: SAMN07418686
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: 293T
cell line: 293T
antibody: RBFOX2
antibody manufacturer: Bethyl
reverse transcriptase: Superscript II
reverse transcriptase buffer: Manganese
Original files (1)
293T
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR5874558 2904215 295284815 131.45 AS_2_SSIIMn_IP_S2_L001_R1_001.C01_AS_2_SSIIMn_IP_RBFOX2.randomer.fast… SRA
SRR5874560 2551136 259631330 118.88 AS_2_SSIIMn_IP_S2_L001_R1_001.D08fixed_AS_2_SSIIMn_IP_RBFOX2.randomer… SRA
SRX3041638 SRP113666 OTHER PAIRED
GSM2719139: AS_2_SSIIMn_IP_RBFOX2_input; Homo sapiens; OTHER
Sample: SRS2389651
BioProject: PRJNA395978
BioSample: SAMN07418685
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: 293T
cell line: 293T
antibody: none (input)
antibody manufacturer: input
reverse transcriptase: Superscript II
reverse transcriptase buffer: Manganese
Original files (1)
293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR5874561 9261554 996196550 457.42 AS_12_SSIIMn_input_S11_L001_R1_001.unassigned.randomer.fastq.gz, AS_1… SRA
SRX3041639 SRP113666 OTHER PAIRED
GSM2719140: AS_3_SSIIIMn_IP_RBFOX2; Homo sapiens; OTHER
Sample: SRS2389652
BioProject: PRJNA395978
BioSample: SAMN07418684
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: 293T
cell line: 293T
antibody: RBFOX2
antibody manufacturer: Bethyl
reverse transcriptase: Superscript III
reverse transcriptase buffer: Manganese
Original files (1)
293T
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR5874562 2884408 292996118 129.91 AS_3_SSIIIMn_IP_S3_L001_R1_001.C01_AS_3_SSIIIMn_IP_RBFOX2.randomer.fa… SRA
SRR5874563 2475031 251713957 114.6 AS_3_SSIIIMn_IP_S3_L001_R1_001.D08fixed_AS_3_SSIIIMn_IP_RBFOX2.random… SRA
SRX3041640 SRP113666 OTHER PAIRED
GSM2719141: AS_3_SSIIIMn_IP_RBFOX2_input; Homo sapiens; OTHER
Sample: SRS2389653
BioProject: PRJNA395978
BioSample: SAMN07418683
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: 293T
cell line: 293T
antibody: none (input)
antibody manufacturer: input
reverse transcriptase: Superscript III
reverse transcriptase buffer: Manganese
Original files (1)
293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR5874564 9434229 1014555495 464.13 AS_13_SSIIIMn_input_S12_L001_R1_001.unassigned.randomer.fastq.gz, AS_… SRA
SRX3041641 SRP113666 OTHER PAIRED
GSM2719142: AS_4_SSIVMn_IP_RBFOX2; Homo sapiens; OTHER
Sample: SRS2389654
BioProject: PRJNA395978
BioSample: SAMN07418682
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: 293T
cell line: 293T
antibody: RBFOX2
antibody manufacturer: Bethyl
reverse transcriptase: Superscript IV
reverse transcriptase buffer: Manganese
Original files (1)
293T
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR5874559 1597628 161811841 72.0 AS_4_SSIVMn_IP_S4_L001_R1_001.C01_AS_4_SSIVMn_IP_RBFOX2.randomer.fast… SRA
SRR5874565 1108195 112154351 51.92 AS_4_SSIVMn_IP_S4_L001_R1_001.D08fixed_AS_4_SSIVMn_IP_RBFOX2.randomer… SRA
SRX3041642 SRP113666 OTHER PAIRED
GSM2719143: AS_4_SSIVMn_IP_RBFOX2_input; Homo sapiens; OTHER
Sample: SRS2389655
BioProject: PRJNA395978
BioSample: SAMN07418681
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: 293T
cell line: 293T
antibody: none (input)
antibody manufacturer: input
reverse transcriptase: Superscript IV
reverse transcriptase buffer: Manganese
Original files (1)
293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR5874566 6567265 697527125 322.14 AS_14_SSIVMn_input_S13_L001_R1_001.unassigned.randomer.fastq.gz, AS_1… SRA
SRX3041643 SRP113666 OTHER PAIRED
GSM2719144: AS_5_AffScMn_IP_RBFOX2; Homo sapiens; OTHER
Sample: SRS2389656
BioProject: PRJNA395978
BioSample: SAMN07418680
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: 293T
cell line: 293T
antibody: RBFOX2
antibody manufacturer: Bethyl
reverse transcriptase: AffinityScript
reverse transcriptase buffer: Manganese
Original files (1)
293T
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR5874567 2590438 261648635 116.81 AS_5_AffScMn_IP_S5_L001_R1_001.C01_AS_5_AffScMn_IP_RBFOX2.randomer.fa… SRA
SRR5874568 2158604 218535691 100.21 AS_5_AffScMn_IP_S5_L001_R1_001.D08fixed_AS_5_AffScMn_IP_RBFOX2.random… SRA
SRX3041644 SRP113666 OTHER PAIRED
GSM2719145: AS_5_AffScMn_IP_RBFOX2_input; Homo sapiens; OTHER
Sample: SRS2389657
BioProject: PRJNA395978
BioSample: SAMN07418679
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: 293T
cell line: 293T
antibody: none (input)
antibody manufacturer: input
reverse transcriptase: AffinityScript
reverse transcriptase buffer: Manganese
Original files (1)
293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR5874569 9417403 996897425 460.37 AS_15_AffScMn_input_S14_L001_R1_001.unassigned.randomer.fastq.gz, AS_… SRA
SRX3041645 SRP113666 OTHER PAIRED
GSM2719146: AS_6_TGIRTMn_IP_RBFOX2; Homo sapiens; OTHER
Sample: SRS2389658
BioProject: PRJNA395978
BioSample: SAMN07418678
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: 293T
cell line: 293T
antibody: RBFOX2
antibody manufacturer: Bethyl
reverse transcriptase: TGIRT
reverse transcriptase buffer: Manganese
Original files (1)
293T
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR5874570 3171341 321496445 143.49 AS_6_TGIRTMn_IP_S6_L001_R1_001.C01_AS_6_TGIRTMn_IP_RBFOX2.randomer.fa… SRA
SRR5874571 1930319 195982309 89.9 AS_6_TGIRTMn_IP_S6_L001_R1_001.D08fixed_AS_6_TGIRTMn_IP_RBFOX2.random… SRA
SRX3041646 SRP113666 OTHER PAIRED
GSM2719147: AS_6_TGIRTMn_IP_RBFOX2_input; Homo sapiens; OTHER
Sample: SRS2389659
BioProject: PRJNA395978
BioSample: SAMN07418677
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: 293T
cell line: 293T
antibody: none (input)
antibody manufacturer: input
reverse transcriptase: TGIRT
reverse transcriptase buffer: Manganese
Original files (1)
293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR5874572 9369820 1005275516 458.18 AS_16_TGIRTMn_input_S15_L001_R1_001.unassigned.randomer.fastq.gz, AS_… SRA
SRX3041647 SRP113666 OTHER PAIRED
GSM2719148: AS_7_MaximaMn_IP_RBFOX2; Homo sapiens; OTHER
Sample: SRS2389660
BioProject: PRJNA395978
BioSample: SAMN07418676
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: 293T
cell line: 293T
antibody: RBFOX2
antibody manufacturer: Bethyl
reverse transcriptase: Maxima
reverse transcriptase buffer: Manganese
Original files (1)
293T
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR5874573 1565229 158743146 72.12 AS_7_MaximaMn_IP_S7_L001_R1_001.C01_AS_7_MaximaMn_IP_RBFOX2.randomer.… SRA
SRR5874574 1000318 101410322 48.15 AS_7_MaximaMn_IP_S7_L001_R1_001.D08fixed_AS_7_MaximaMn_IP_RBFOX2.rand… SRA
SRX3041648 SRP113666 OTHER PAIRED
GSM2719149: AS_7_MaximaMn_IP_RBFOX2_input; Homo sapiens; OTHER
Sample: SRS2389661
BioProject: PRJNA395978
BioSample: SAMN07418675
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: 293T
cell line: 293T
antibody: none (input)
antibody manufacturer: input
reverse transcriptase: Maxima
reverse transcriptase buffer: Manganese
Original files (1)
293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR5874575 6091603 652710895 303.96 AS_17_MaximaMn_input_S16_L001_R1_001.unassigned.randomer.fastq.gz, AS… SRA
SRX3041649 SRP113666 OTHER PAIRED
GSM2719150: AS_8_SSIII_IP_RBFOX2; Homo sapiens; OTHER
Sample: SRS2389662
BioProject: PRJNA395978
BioSample: SAMN07418674
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: 293T
cell line: 293T
antibody: RBFOX2
antibody manufacturer: Bethyl
reverse transcriptase: Superscript III
reverse transcriptase buffer: Standard (magnesium)
Original files (1)
293T
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR5874576 2934608 298387673 134.31 AS_8_SSIII_IP_S8_L001_R1_001.C01_AS_8_SSIII_IP_RBFOX2.randomer.fastq.… SRA
SRR5874577 2474911 251856186 116.89 AS_8_SSIII_IP_S8_L001_R1_001.D08fixed_AS_8_SSIII_IP_RBFOX2.randomer.f… SRA
SRX3041650 SRP113666 OTHER PAIRED
GSM2719151: AS_8_SSIII_IP_RBFOX2_input; Homo sapiens; OTHER
Sample: SRS2389663
BioProject: PRJNA395978
BioSample: SAMN07418673
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: 293T
cell line: 293T
antibody: none (input)
antibody manufacturer: input
reverse transcriptase: Superscript III
reverse transcriptase buffer: Standard (magnesium)
Original files (1)
293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR5874578 8449384 911055006 418.61 AS_18_SSIII_input_S17_L001_R1_001.unassigned.randomer.fastq.gz, AS_18… SRA
SRX3041651 SRP113666 OTHER PAIRED
GSM2719152: AS_9_Maxima_IP_RBFOX2; Homo sapiens; OTHER
Sample: SRS2389664
BioProject: PRJNA395978
BioSample: SAMN07418672
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: 293T
cell line: 293T
antibody: RBFOX2
antibody manufacturer: Bethyl
reverse transcriptase: Maxima
reverse transcriptase buffer: Standard (magnesium)
Original files (1)
293T
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR5874579 2883487 293079011 129.59 AS_9_Maxima_IP_S9_L001_R1_001.C01_AS_9_Maxima_IP_RBFOX2.randomer.fast… SRA
SRR5874580 2377380 241827481 110.03 AS_9_Maxima_IP_S9_L001_R1_001.D08fixed_AS_9_Maxima_IP_RBFOX2.randomer… SRA
SRX3041652 SRP113666 OTHER PAIRED
GSM2719153: AS_9_Maxima_IP_RBFOX2_input; Homo sapiens; OTHER
Sample: SRS2389665
BioProject: PRJNA395978
BioSample: SAMN07418690
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: 293T
cell line: 293T
antibody: none (input)
antibody manufacturer: input
reverse transcriptase: Maxima
reverse transcriptase buffer: Standard (magnesium)
Original files (1)
293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR5874581 19526857 2112411867 961.72 AS_19_Maxima_input_S18_L001_R1_001.unassigned.randomer.fastq.gz, AS_1… SRA
SRX3041653 SRP113666 OTHER PAIRED
GSM2719154: AS_FOX2_AFFSC_CLIP_RBFOX2; Homo sapiens; OTHER
Sample: SRS2389666
BioProject: PRJNA395978
BioSample: SAMN07418689
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: 293T
cell line: 293T
antibody: RBFOX2
antibody manufacturer: Bethyl
reverse transcriptase: AffinityScript
reverse transcriptase buffer: Standard (magnesium)
Original files (1)
293T
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR5874582 6693997 756421661 253.12 AS_FOX2_AFFSC_CLIP_S105_L008_R1_001.A01_AS_FOX2_AFFSC_CLIP_RBFOX2.ran… SRA
SRR5874583 6233225 704354425 236.99 AS_FOX2_AFFSC_CLIP_S105_L008_R1_001.B06_AS_FOX2_AFFSC_CLIP_RBFOX2.ran… SRA
SRX3041654 SRP113666 OTHER PAIRED
GSM2719155: FOX2_AFFSC_RBFOX2; Homo sapiens; OTHER
Sample: SRS2389667
BioProject: PRJNA395978
BioSample: SAMN07418692
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: 293T
cell line: 293T
antibody: RBFOX2
antibody manufacturer: Bethyl
reverse transcriptase: AffinityScript
reverse transcriptase buffer: Standard (magnesium)
Original files (1)
293T
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR5874584 4796641 542020433 182.88 FOX2_AFFSC_L000_R1_001.A01_FOX2_AFFSC_RBFOX2.randomer.fastq.gz, FOX2_… SRA
SRR5874585 6451735 729046055 247.01 FOX2_AFFSC_L000_R1_001.B06_FOX2_AFFSC_RBFOX2.randomer.fastq.gz, FOX2_… SRA
SRX3041655 SRP113666 OTHER PAIRED
GSM2719156: AS_AMV_RBFOX2; Homo sapiens; OTHER
Sample: SRS2389668
BioProject: PRJNA395978
BioSample: SAMN07418691
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: 293T
cell line: 293T
antibody: RBFOX2
antibody manufacturer: Bethyl
reverse transcriptase: AMV
reverse transcriptase buffer: Standard (magnesium)
Original files (1)
293T
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR5874586 10074011 1087993188 346.01 AS_AMV_S70_L004_R1_001.X2A_AS_AMV_RBFOX2.randomer.fastq.gz, AS_AMV_S7… SRA
SRR5874587 5844214 631175112 201.66 AS_AMV_S70_L004_R1_001.X2B_AS_AMV_RBFOX2.randomer.fastq.gz, AS_AMV_S7… SRA
SRX3041656 SRP113666 OTHER PAIRED
GSM2719157: AS_M_MLV_RBFOX2; Homo sapiens; OTHER
Sample: SRS2389669
BioProject: PRJNA395978
BioSample: SAMN07418644
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: 293T
cell line: 293T
antibody: RBFOX2
antibody manufacturer: Bethyl
reverse transcriptase: M-MLV
reverse transcriptase buffer: Standard (magnesium)
Original files (1)
293T
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR5874588 10400841 1123290828 362.01 AS_M_MLV_S71_L004_R1_001.X2A_AS_M_MLV_RBFOX2.randomer.fastq.gz, AS_M_… SRA
SRR5874589 6005832 648629856 210.23 AS_M_MLV_S71_L004_R1_001.X2B_AS_M_MLV_RBFOX2.randomer.fastq.gz, AS_M_… SRA
SRX3041657 SRP113666 OTHER PAIRED
GSM2719158: AS_SuS2_RBFOX2; Homo sapiens; OTHER
Sample: SRS2389670
BioProject: PRJNA395978
BioSample: SAMN07418670
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: 293T
cell line: 293T
antibody: RBFOX2
antibody manufacturer: Bethyl
reverse transcriptase: Superscript II
reverse transcriptase buffer: Standard (magnesium)
Original files (1)
293T
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR5874590 10816141 1168143228 376.58 AS_SuS2_S72_L004_R1_001.X2A_AS_SuS2_RBFOX2.randomer.fastq.gz, AS_SuS2… SRA
SRR5874591 6293434 679690872 220.42 AS_SuS2_S72_L004_R1_001.X2B_AS_SuS2_RBFOX2.randomer.fastq.gz, AS_SuS2… SRA
SRX3041658 SRP113666 OTHER PAIRED
GSM2719159: AS_FOX2_SSIII_CLIP_RBFOX2; Homo sapiens; OTHER
Sample: SRS2389671
BioProject: PRJNA395978
BioSample: SAMN07418671
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: 293T
cell line: 293T
antibody: RBFOX2
antibody manufacturer: Bethyl
reverse transcriptase: Superscript III
reverse transcriptase buffer: Standard (magnesium)
Original files (1)
293T
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR5874592 3443722 389140586 134.02 FOX2_SSIII_L000_R1_001.A01_FOX2_SSIII_RBFOX2.randomer.fastq.gz, FOX2_… SRA
SRR5874593 4637243 524008459 181.23 FOX2_SSIII_L000_R1_001.B06_FOX2_SSIII_RBFOX2.randomer.fastq.gz, FOX2_… SRA
SRX3041659 SRP113666 OTHER PAIRED
GSM2719160: AS_SSc3_RBFOX2; Homo sapiens; OTHER
Sample: SRS2389672
BioProject: PRJNA395978
BioSample: SAMN07418660
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: 293T
cell line: 293T
antibody: RBFOX2
antibody manufacturer: Bethyl
reverse transcriptase: Superscript III
reverse transcriptase buffer: Standard (magnesium)
Original files (1)
293T
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR5874594 10788698 1165179384 369.76 AS_SSc3_S74_L004_R1_001.X2A_AS_SSc3_RBFOX2.randomer.fastq.gz, AS_SSc3… SRA
SRR5874595 6216607 671393556 214.76 AS_SSc3_S74_L004_R1_001.X2B_AS_SSc3_RBFOX2.randomer.fastq.gz, AS_SSc3… SRA
SRX3041660 SRP113666 OTHER PAIRED
GSM2719161: FOX2_SSIII_RBFOX2; Homo sapiens; OTHER
Sample: SRS2389673
BioProject: PRJNA395978
BioSample: SAMN07418693
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: 293T
cell line: 293T
antibody: RBFOX2
antibody manufacturer: Bethyl
reverse transcriptase: Superscript III
reverse transcriptase buffer: Standard (magnesium)
Original files (1)
293T
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR5874596 7056923 797432299 269.69 AS_FOX2_SSIII_CLIP_S109_L008_R1_001.A01_AS_FOX2_SSIII_CLIP_RBFOX2.ran… SRA
SRR5874597 6542980 739356740 251.55 AS_FOX2_SSIII_CLIP_S109_L008_R1_001.B06_AS_FOX2_SSIII_CLIP_RBFOX2.ran… SRA
SRX3041661 SRP113666 OTHER PAIRED
GSM2719162: AS_FOX2_SS4_CLIP_RBFOX2; Homo sapiens; OTHER
Sample: SRS2389674
BioProject: PRJNA395978
BioSample: SAMN07418659
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: 293T
cell line: 293T
antibody: RBFOX2
antibody manufacturer: Bethyl
reverse transcriptase: Superscript IV
reverse transcriptase buffer: Standard (magnesium)
Original files (1)
293T
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR5874598 5837906 659683378 225.2 AS_FOX2_SS4_CLIP_S113_L008_R1_001.A01_AS_FOX2_SS4_CLIP_RBFOX2.randome… SRA
SRR5874599 5174058 584668554 201.18 AS_FOX2_SS4_CLIP_S113_L008_R1_001.B06_AS_FOX2_SS4_CLIP_RBFOX2.randome… SRA
SRX3041662 SRP113666 OTHER PAIRED
GSM2719163: AS_SSc4_RBFOX2; Homo sapiens; OTHER
Sample: SRS2389675
BioProject: PRJNA395978
BioSample: SAMN07418658
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: 293T
cell line: 293T
antibody: RBFOX2
antibody manufacturer: Bethyl
reverse transcriptase: Superscript IV
reverse transcriptase buffer: Standard (magnesium)
Original files (1)
293T
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR5874600 9992640 1079205120 344.48 AS_SSc4_S75_L004_R1_001.X2A_AS_SSc4_RBFOX2.randomer.fastq.gz, AS_SSc4… SRA
SRR5874601 5715210 617242680 198.8 AS_SSc4_S75_L004_R1_001.X2B_AS_SSc4_RBFOX2.randomer.fastq.gz, AS_SSc4… SRA
SRX3041663 SRP113666 OTHER PAIRED
GSM2719164: FOX2_SS4_RBFOX2; Homo sapiens; OTHER
Sample: SRS2389676
BioProject: PRJNA395978
BioSample: SAMN07418657
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: 293T
cell line: 293T
antibody: RBFOX2
antibody manufacturer: Bethyl
reverse transcriptase: Superscript IV
reverse transcriptase buffer: Standard (magnesium)
Original files (1)
293T
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR5874602 2182889 246666457 84.4 FOX2_SS4_L000_R1_001.A01_FOX2_SS4_RBFOX2.randomer.fastq.gz, FOX2_SS4_… SRA
SRR5874603 2870879 324409327 111.59 FOX2_SS4_L000_R1_001.B06_FOX2_SS4_RBFOX2.randomer.fastq.gz, FOX2_SS4_… SRA
SRX3041664 SRP113666 OTHER PAIRED
GSM2719165: FOX2_SS4in3B_CLIP_-AS45_RBFOX2; Homo sapiens; OTHER
Sample: SRS2389677
BioProject: PRJNA395978
BioSample: SAMN07418656
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: 293T
cell line: 293T
antibody: RBFOX2
antibody manufacturer: Bethyl
reverse transcriptase: Superscript IV
reverse transcriptase buffer: Superscript III buffer
Original files (1)
293T
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR5874604 5384708 608472004 198.28 FOX2_SS4in3B_CLIP_-AS45_S99_L007_R1_001.A01_FOX2_SS4in3B_CLIP_-AS45_R… SRA
SRR5874605 4758236 537680668 176.4 FOX2_SS4in3B_CLIP_-AS45_S99_L007_R1_001.B06_FOX2_SS4in3B_CLIP_-AS45_R… SRA
SRX3041665 SRP113666 OTHER PAIRED
GSM2719166: FOX2_SS4in3B_RBFOX2; Homo sapiens; OTHER
Sample: SRS2389678
BioProject: PRJNA395978
BioSample: SAMN07418655
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: 293T
cell line: 293T
antibody: RBFOX2
antibody manufacturer: Bethyl
reverse transcriptase: Superscript IV
reverse transcriptase buffer: Superscript III buffer
Original files (1)
293T
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR5874606 2895484 327189692 112.39 FOX2_SS4in3B_L000_R1_001.A01_FOX2_SS4in3B_RBFOX2.randomer.fastq.gz, F… SRA
SRR5874607 3843372 434301036 150.03 FOX2_SS4in3B_L000_R1_001.B06_FOX2_SS4in3B_RBFOX2.randomer.fastq.gz, F… SRA
SRX3041666 SRP113666 OTHER PAIRED
GSM2719167: AS_FOX2_SS4_MN_CLIP_RBFOX2; Homo sapiens; OTHER
Sample: SRS2389679
BioProject: PRJNA395978
BioSample: SAMN07418654
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: 293T
cell line: 293T
antibody: RBFOX2
antibody manufacturer: Bethyl
reverse transcriptase: Superscript IV
reverse transcriptase buffer: Manganese
Original files (1)
293T
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR5874608 2250307 254284691 88.09 AS_FOX2_SS4_MN_CLIP_S117_L008_R1_001.A01_AS_FOX2_SS4_MN_CLIP_RBFOX2.r… SRA
SRR5874609 1779772 201114236 70.22 AS_FOX2_SS4_MN_CLIP_S117_L008_R1_001.B06_AS_FOX2_SS4_MN_CLIP_RBFOX2.r… SRA
SRX3041667 SRP113666 OTHER PAIRED
GSM2719168: AS_SS4Mn_RBFOX2; Homo sapiens; OTHER
Sample: SRS2389680
BioProject: PRJNA395978
BioSample: SAMN07418653
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: 293T
cell line: 293T
antibody: RBFOX2
antibody manufacturer: Bethyl
reverse transcriptase: Superscript IV
reverse transcriptase buffer: Manganese
Original files (1)
293T
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR5874610 7437488 803248704 258.09 AS_SS4Mn_S76_L004_R1_001.X2A_AS_SS4Mn_RBFOX2.randomer.fastq.gz, AS_SS… SRA
SRR5874611 3972088 428985504 139.07 AS_SS4Mn_S76_L004_R1_001.X2B_AS_SS4Mn_RBFOX2.randomer.fastq.gz, AS_SS… SRA
SRX3041668 SRP113666 OTHER PAIRED
GSM2719169: FOX2_SS4_MN_RBFOX2; Homo sapiens; OTHER
Sample: SRS2389681
BioProject: PRJNA395978
BioSample: SAMN07418652
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: 293T
cell line: 293T
antibody: RBFOX2
antibody manufacturer: Bethyl
reverse transcriptase: Superscript IV
reverse transcriptase buffer: Manganese
Original files (1)
293T
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR5874612 1061457 119944641 42.96 FOX2_SS4_MN_L000_R1_001.A01_FOX2_SS4_MN_RBFOX2.randomer.fastq.gz, FOX… SRA
SRR5874613 1111119 125556447 45.3 FOX2_SS4_MN_L000_R1_001.B06_FOX2_SS4_MN_RBFOX2.randomer.fastq.gz, FOX… SRA
SRX3041669 SRP113666 OTHER PAIRED
GSM2719170: AS_FOX2_TGIRT_CLIP_RBFOX2; Homo sapiens; OTHER
Sample: SRS2389682
BioProject: PRJNA395978
BioSample: SAMN07418651
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: 293T
cell line: 293T
antibody: RBFOX2
antibody manufacturer: Bethyl
reverse transcriptase: TGIRT
reverse transcriptase buffer: Standard (magnesium)
Original files (1)
293T
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR5874614 8689334 981894742 327.12 AS_FOX2_TGIRT_CLIP_S121_L008_R1_001.A01_AS_FOX2_TGIRT_CLIP_RBFOX2.ran… SRA
SRR5874615 6506937 735283881 247.48 AS_FOX2_TGIRT_CLIP_S121_L008_R1_001.B06_AS_FOX2_TGIRT_CLIP_RBFOX2.ran… SRA
SRX3041670 SRP113666 OTHER PAIRED
GSM2719171: AS_TiGER_RBFOX2; Homo sapiens; OTHER
Sample: SRS2389683
BioProject: PRJNA395978
BioSample: SAMN07418650
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: 293T
cell line: 293T
antibody: RBFOX2
antibody manufacturer: Bethyl
reverse transcriptase: TGIRT
reverse transcriptase buffer: Standard (magnesium)
Original files (1)
293T
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR5874616 11395289 1230691212 388.74 AS_TiGER_S77_L004_R1_001.X2A_AS_TiGER_RBFOX2.randomer.fastq.gz, AS_Ti… SRA
SRR5874617 6016024 649730592 206.72 AS_TiGER_S77_L004_R1_001.X2B_AS_TiGER_RBFOX2.randomer.fastq.gz, AS_Ti… SRA
SRX3041671 SRP113666 OTHER PAIRED
GSM2719172: FOX2_TGIRT_RBFOX2; Homo sapiens; OTHER
Sample: SRS2389684
BioProject: PRJNA395978
BioSample: SAMN07418649
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: 293T
cell line: 293T
antibody: RBFOX2
antibody manufacturer: Bethyl
reverse transcriptase: TGIRT
reverse transcriptase buffer: Standard (magnesium)
Original files (1)
293T
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR5874618 5978988 675625644 223.44 FOX2_TGIRT_L000_R1_001.A01_FOX2_TGIRT_RBFOX2.randomer.fastq.gz, FOX2_… SRA
SRR5874619 6441050 727838650 241.44 FOX2_TGIRT_L000_R1_001.B06_FOX2_TGIRT_RBFOX2.randomer.fastq.gz, FOX2_… SRA
SRX3041672 SRP113666 OTHER PAIRED
GSM2719173: AS_FOX2_AFFSC_CLIP_RBFOX2_input; Homo sapiens; OTHER
Sample: SRS2389685
BioProject: PRJNA395978
BioSample: SAMN07418648
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: 293T
cell line: 293T
antibody: none (input)
antibody manufacturer: input
reverse transcriptase: AffinityScript
reverse transcriptase buffer: Standard (magnesium)
Original files (1)
293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR5874620 12685418 1522250160 529.64 AS_FOX2_AFFSC_IN_S106_L008_R1_001.unassigned.randomer.fastq.gz, AS_FO… SRA
SRX3041673 SRP113666 OTHER PAIRED
GSM2719174: AS_FOX2_SS4_CLIP_RBFOX2_input; Homo sapiens; OTHER
Sample: SRS2389686
BioProject: PRJNA395978
BioSample: SAMN07418647
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: 293T
cell line: 293T
antibody: none (input)
antibody manufacturer: input
reverse transcriptase: Superscript IV
reverse transcriptase buffer: Standard (magnesium)
Original files (1)
293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR5874621 2428234 291388080 102.01 AS_FOX2_SS4_IN_S114_L008_R1_001.unassigned.randomer.fastq.gz, AS_FOX2… SRA
SRX3041674 SRP113666 OTHER PAIRED
GSM2719175: AS_FOX2_SS4_MN_CLIP_RBFOX2_input; Homo sapiens; OTHER
Sample: SRS2389687
BioProject: PRJNA395978
BioSample: SAMN07418646
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: 293T
cell line: 293T
antibody: none (input)
antibody manufacturer: input
reverse transcriptase: Superscript IV
reverse transcriptase buffer: Manganese
Original files (1)
293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR5874622 4666190 559942800 199.18 AS_FOX2_SS4_MN_IN_S118_L008_R1_001.unassigned.randomer.fastq.gz, AS_F… SRA
SRX3041675 SRP113666 OTHER PAIRED
GSM2719176: AS_FOX2_SSIII_CLIP_RBFOX2_input; Homo sapiens; OTHER
Sample: SRS2389688
BioProject: PRJNA395978
BioSample: SAMN07418645
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: 293T
cell line: 293T
antibody: none (input)
antibody manufacturer: input
reverse transcriptase: Superscript III
reverse transcriptase buffer: Standard (magnesium)
Original files (1)
293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR5874623 7951059 954127080 332.24 AS_FOX2_SSIII_IN_S110_L008_R1_001.unassigned.randomer.fastq.gz, AS_FO… SRA
SRX3041676 SRP113666 OTHER PAIRED
GSM2719177: AS_FOX2_TGIRT_CLIP_RBFOX2_input; Homo sapiens; OTHER
Sample: SRS2389689
BioProject: PRJNA395978
BioSample: SAMN07418707
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: 293T
cell line: 293T
antibody: none (input)
antibody manufacturer: input
reverse transcriptase: TGIRT
reverse transcriptase buffer: Standard (magnesium)
Original files (1)
293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR5874624 8270070 992408400 344.97 AS_FOX2_TGIRT_IN_S122_L008_R1_001.unassigned.randomer.fastq.gz, AS_FO… SRA
SRX3041677 SRP113666 OTHER PAIRED
GSM2719178: FOX2_SS4in3B_CLIP_-AS45_RBFOX2_input; Homo sapiens; OTHER
Sample: SRS2389690
BioProject: PRJNA395978
BioSample: SAMN07418706
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: 293T
cell line: 293T
antibody: none (input)
antibody manufacturer: input
reverse transcriptase: Superscript IV
reverse transcriptase buffer: Superscript III buffer
Original files (1)
293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR5874625 10830291 1299634920 444.01 FOX2_SS4in3B_IN_AS46_S100_L007_R1_001.unassigned.randomer.fastq.gz, F… SRA
SRX3041678 SRP113666 OTHER PAIRED
GSM2719179: TDP_AFFSC_TARDBP; Homo sapiens; OTHER
Sample: SRS2389692
BioProject: PRJNA395978
BioSample: SAMN07418705
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: 293T
cell line: 293T
antibody: TARDBP
antibody manufacturer: Bethyl
reverse transcriptase: AffinityScript
reverse transcriptase buffer: Standard (magnesium)
Original files (1)
293T
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR5874626 4787451 540981963 181.08 TDP_AFFSC_L000_R1_001.C01_TDP_AFFSC_TARDBP.randomer.fastq.gz, TDP_AFF… SRA
SRR5874627 3806484 430132692 144.54 TDP_AFFSC_L000_R1_001.D08fixed_TDP_AFFSC_TARDBP.randomer.fastq.gz, TD… SRA
SRX3041679 SRP113666 OTHER PAIRED
GSM2719180: TDP_SS4_MN_TARDBP; Homo sapiens; OTHER
Sample: SRS2389691
BioProject: PRJNA395978
BioSample: SAMN07418704
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: 293T
cell line: 293T
antibody: TARDBP
antibody manufacturer: Bethyl
reverse transcriptase: Superscript IV
reverse transcriptase buffer: Manganese
Original files (1)
293T
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR5874628 987434 111580042 39.11 TDP_SS4_MN_L000_R1_001.C01_TDP_SS4_MN_TARDBP.randomer.fastq.gz, TDP_S… SRA
SRR5874629 727304 82185352 28.97 TDP_SS4_MN_L000_R1_001.D08fixed_TDP_SS4_MN_TARDBP.randomer.fastq.gz, … SRA
SRX3041680 SRP113666 OTHER PAIRED
GSM2719181: TDP_SS4_TARDBP; Homo sapiens; OTHER
Sample: SRS2389693
BioProject: PRJNA395978
BioSample: SAMN07418703
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: 293T
cell line: 293T
antibody: TARDBP
antibody manufacturer: Bethyl
reverse transcriptase: Superscript IV
reverse transcriptase buffer: Standard (magnesium)
Original files (1)
293T
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR5874630 1705742 192748846 64.82 TDP_SS4_L000_R1_001.C01_TDP_SS4_TARDBP.randomer.fastq.gz, TDP_SS4_L00… SRA
SRR5874631 1393512 157466856 53.1 TDP_SS4_L000_R1_001.D08fixed_TDP_SS4_TARDBP.randomer.fastq.gz, TDP_SS… SRA
SRX3041681 SRP113666 OTHER PAIRED
GSM2719182: TDP_SS4in3B_CLIP_AS47_TARDBP; Homo sapiens; OTHER
Sample: SRS2389694
BioProject: PRJNA395978
BioSample: SAMN07418702
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: 293T
cell line: 293T
antibody: TARDBP
antibody manufacturer: Bethyl
reverse transcriptase: Superscript IV
reverse transcriptase buffer: Superscript III buffer
Original files (1)
293T
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR5874632 5682229 642091877 211.86 TDP_SS4in3B_CLIP_AS47_S101_L007_R1_001.C01_TDP_SS4in3B_CLIP_AS47_TARD… SRA
SRR5874633 3733591 421895783 139.78 TDP_SS4in3B_CLIP_AS47_S101_L007_R1_001.D08fixed_TDP_SS4in3B_CLIP_AS47… SRA
SRX3041682 SRP113666 OTHER PAIRED
GSM2719183: TDP_SS4in3B_TARDBP; Homo sapiens; OTHER
Sample: SRS2389695
BioProject: PRJNA395978
BioSample: SAMN07418701
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: 293T
cell line: 293T
antibody: TARDBP
antibody manufacturer: Bethyl
reverse transcriptase: Superscript IV
reverse transcriptase buffer: Superscript III buffer
Original files (1)
293T
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR5874634 1652712 186756456 63.47 TDP_SS4in3B_L000_R1_001.C01_TDP_SS4in3B_TARDBP.randomer.fastq.gz, TDP… SRA
SRR5874635 1394754 157607202 53.7 TDP_SS4in3B_L000_R1_001.D08fixed_TDP_SS4in3B_TARDBP.randomer.fastq.gz… SRA
SRX3041683 SRP113666 OTHER PAIRED
GSM2719184: TDP_SSIII_TARDBP; Homo sapiens; OTHER
Sample: SRS2389696
BioProject: PRJNA395978
BioSample: SAMN07418700
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: 293T
cell line: 293T
antibody: TARDBP
antibody manufacturer: Bethyl
reverse transcriptase: Superscript III
reverse transcriptase buffer: Standard (magnesium)
Original files (1)
293T
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR5874636 3064925 346336525 117.84 TDP_SSIII_L000_R1_001.C01_TDP_SSIII_TARDBP.randomer.fastq.gz, TDP_SSI… SRA
SRR5874637 2493570 281773410 96.18 TDP_SSIII_L000_R1_001.D08fixed_TDP_SSIII_TARDBP.randomer.fastq.gz, TD… SRA
SRX3041684 SRP113666 OTHER PAIRED
GSM2719185: TDP_TGIRT_TARDBP; Homo sapiens; OTHER
Sample: SRS2389697
BioProject: PRJNA395978
BioSample: SAMN07418699
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: 293T
cell line: 293T
antibody: TARDBP
antibody manufacturer: Bethyl
reverse transcriptase: TGIRT
reverse transcriptase buffer: Standard (magnesium)
Original files (1)
293T
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR5874638 4403931 497644203 163.98 TDP_TGIRT_L000_R1_001.C01_TDP_TGIRT_TARDBP.randomer.fastq.gz, TDP_TGI… SRA
SRR5874639 2915012 329396356 108.79 TDP_TGIRT_L000_R1_001.D08fixed_TDP_TGIRT_TARDBP.randomer.fastq.gz, TD… SRA
SRX3041685 SRP113666 OTHER PAIRED
GSM2719186: AS_TDP_AFFSC_CLIP_TARDBP; Homo sapiens; OTHER
Sample: SRS2389698
BioProject: PRJNA395978
BioSample: SAMN07418698
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: 293T
cell line: 293T
antibody: TARDBP
antibody manufacturer: Bethyl
reverse transcriptase: AffinityScript
reverse transcriptase buffer: Standard (magnesium)
Original files (1)
293T
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR5874640 7438446 840544398 284.24 AS_TDP_AFFSC_CLIP_S107_L008_R1_001.C01_AS_TDP_AFFSC_CLIP_TARDBP.rando… SRA
SRR5874641 4961375 560635375 190.6 AS_TDP_AFFSC_CLIP_S107_L008_R1_001.D08fixed_AS_TDP_AFFSC_CLIP_TARDBP.… SRA
SRX3041686 SRP113666 OTHER PAIRED
GSM2719187: AS_TDP_SS4_CLIP_TARDBP; Homo sapiens; OTHER
Sample: SRS2389699
BioProject: PRJNA395978
BioSample: SAMN07418697
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: 293T
cell line: 293T
antibody: TARDBP
antibody manufacturer: Bethyl
reverse transcriptase: Superscript IV
reverse transcriptase buffer: Standard (magnesium)
Original files (1)
293T
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR5874642 6306206 712601278 246.24 AS_TDP_SS4_CLIP_S115_L008_R1_001.C01_AS_TDP_SS4_CLIP_TARDBP.randomer.… SRA
SRR5874643 4168882 471083666 163.19 AS_TDP_SS4_CLIP_S115_L008_R1_001.D08fixed_AS_TDP_SS4_CLIP_TARDBP.rand… SRA
SRX3041687 SRP113666 OTHER PAIRED
GSM2719188: AS_TDP_SS4_MN_CLIP_TARDBP; Homo sapiens; OTHER
Sample: SRS2389700
BioProject: PRJNA395978
BioSample: SAMN07418696
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: 293T
cell line: 293T
antibody: TARDBP
antibody manufacturer: Bethyl
reverse transcriptase: Superscript IV
reverse transcriptase buffer: Standard (magnesium)
Original files (1)
293T
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR5874644 1985824 224398112 79.28 AS_TDP_SS4_MN_CLIP_S119_L008_R1_001.C01_AS_TDP_SS4_MN_CLIP_TARDBP.ran… SRA
SRR5874645 1187182 134151566 47.53 AS_TDP_SS4_MN_CLIP_S119_L008_R1_001.D08fixed_AS_TDP_SS4_MN_CLIP_TARDB… SRA
SRX3041688 SRP113666 OTHER PAIRED
GSM2719189: AS_TDP_SSIII_CLIP_TARDBP; Homo sapiens; OTHER
Sample: SRS2389701
BioProject: PRJNA395978
BioSample: SAMN07418695
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: 293T
cell line: 293T
antibody: TARDBP
antibody manufacturer: Bethyl
reverse transcriptase: Superscript III
reverse transcriptase buffer: Standard (magnesium)
Original files (1)
293T
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR5874646 8238397 930938861 321.87 AS_TDP_SSIII_CLIP_S111_L008_R1_001.C01_AS_TDP_SSIII_CLIP_TARDBP.rando… SRA
SRR5874647 5531392 625047296 216.54 AS_TDP_SSIII_CLIP_S111_L008_R1_001.D08fixed_AS_TDP_SSIII_CLIP_TARDBP.… SRA
SRX3041689 SRP113666 OTHER PAIRED
GSM2719190: AS_TDP_TGIRT_CLIP_TARDBP; Homo sapiens; OTHER
Sample: SRS2389702
BioProject: PRJNA395978
BioSample: SAMN07418694
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: 293T
cell line: 293T
antibody: TARDBP
antibody manufacturer: Bethyl
reverse transcriptase: TGIRT
reverse transcriptase buffer: Standard (magnesium)
Original files (1)
293T
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR5874648 7712414 871502782 294.92 AS_TDP_TGIRT_CLIP_S123_L008_R1_001.C01_AS_TDP_TGIRT_CLIP_TARDBP.rando… SRA
SRR5874649 4819952 544654576 185.34 AS_TDP_TGIRT_CLIP_S123_L008_R1_001.D08fixed_AS_TDP_TGIRT_CLIP_TARDBP.… SRA
SRX3041690 SRP113666 OTHER PAIRED
GSM2719191: TDP_SS4in3B_CLIP_AS47_TARDBP_input; Homo sapiens; OTHER
Sample: SRS2389703
BioProject: PRJNA395978
BioSample: SAMN07418669
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: 293T
cell line: 293T
antibody: none (input)
antibody manufacturer: input
reverse transcriptase: Superscript IV
reverse transcriptase buffer: Superscript III buffer
Original files (1)
293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR5874650 11811704 1417404480 482.19 TDP_SS4in3B_IN_AS48_S102_L007_R1_001.unassigned.randomer.fastq.gz, TD… SRA
SRX3041691 SRP113666 OTHER PAIRED
GSM2719192: AS_TDP_AFFSC_CLIP_TARDBP_input; Homo sapiens; OTHER
Sample: SRS2389704
BioProject: PRJNA395978
BioSample: SAMN07418668
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: 293T
cell line: 293T
antibody: none (input)
antibody manufacturer: input
reverse transcriptase: AffinityScript
reverse transcriptase buffer: Standard (magnesium)
Original files (1)
293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR5874651 12003587 1440430440 495.33 AS_TDP_AFFSC_IN_S108_L008_R1_001.unassigned.randomer.fastq.gz, AS_TDP… SRA
SRX3041692 SRP113666 OTHER PAIRED
GSM2719193: AS_TDP_SS4_CLIP_TARDBP_input; Homo sapiens; OTHER
Sample: SRS2389705
BioProject: PRJNA395978
BioSample: SAMN07418667
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: 293T
cell line: 293T
antibody: none (input)
antibody manufacturer: input
reverse transcriptase: Superscript IV
reverse transcriptase buffer: Standard (magnesium)
Original files (1)
293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR5874652 11929740 1431568800 506.53 AS_TDP_SS4_IN_S116_L008_R1_001.unassigned.randomer.fastq.gz, AS_TDP_S… SRA
SRX3041693 SRP113666 OTHER PAIRED
GSM2719194: AS_TDP_SS4_MN_CLIP_TARDBP_input; Homo sapiens; OTHER
Sample: SRS2389706
BioProject: PRJNA395978
BioSample: SAMN07418666
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: 293T
cell line: 293T
antibody: none (input)
antibody manufacturer: input
reverse transcriptase: Superscript IV
reverse transcriptase buffer: Manganese
Original files (1)
293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR5874653 9965760 1195891200 428.26 AS_TDP_SS4_MN_IN_S120_L008_R1_001.unassigned.randomer.fastq.gz, AS_TD… SRA
SRX3041694 SRP113666 OTHER PAIRED
GSM2719195: AS_TDP_SSIII_CLIP_TARDBP_input; Homo sapiens; OTHER
Sample: SRS2389707
BioProject: PRJNA395978
BioSample: SAMN07418665
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: 293T
cell line: 293T
antibody: none (input)
antibody manufacturer: input
reverse transcriptase: Superscript III
reverse transcriptase buffer: Standard (magnesium)
Original files (1)
293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR5874654 15324607 1838952840 660.08 AS_TDP_SSIII_IN_S112_L008_R1_001.unassigned.randomer.fastq.gz, AS_TDP… SRA
SRX3041695 SRP113666 OTHER PAIRED
GSM2719196: AS_TDP_TGIRT_CLIP_TARDBP_input; Homo sapiens; OTHER
Sample: SRS2389708
BioProject: PRJNA395978
BioSample: SAMN07418664
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: 293T
cell line: 293T
antibody: none (input)
antibody manufacturer: input
reverse transcriptase: TGIRT
reverse transcriptase buffer: Standard (magnesium)
Original files (1)
293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR5874655 12851842 1542221040 539.94 AS_TDP_TGIRT_IN_S124_L008_R1_001.unassigned.randomer.fastq.gz, AS_TDP… SRA
SRX3041696 SRP113666 OTHER PAIRED
GSM2719197: 293XT_Input; Homo sapiens; OTHER
Sample: SRS2389709
BioProject: PRJNA395978
BioSample: SAMN07418663
Platform: ILLUMINA
Instrument: Illumina HiSeq 4000
Organism: Homo sapiens
Sample attributes
source_name: 293T
cell line: 293T
antibody: none (input)
antibody manufacturer: input
reverse transcriptase: AffinityScript
reverse transcriptase buffer: Standard (magnesium)
Original files (1)
293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR5874656 32054523 3365724915 1098.43 SRR5874656, SRR5874656.sralite SRA

Linked Publications (1)

Variation in single-nucleotide sensitivity of eCLIP derived from reverse transcription conditions.
Methods (San Diego, Calif.) · 2017

Data Files (102)

Accession File Name Stored Type Output Type Mapping Assembly Size Download
— AS_11_MMLVMn_input_S10_L001_R1_001.unassigned.randomer… OTHER 567.1 MB link
— AS_12_SSIIMn_input_S11_L001_R1_001.unassigned.randomer… OTHER 457.4 MB link
— AS_13_SSIIIMn_input_S12_L001_R1_001.unassigned.randome… OTHER 464.1 MB link
— AS_14_SSIVMn_input_S13_L001_R1_001.unassigned.randomer… OTHER 322.1 MB link
— AS_15_AffScMn_input_S14_L001_R1_001.unassigned.randome… OTHER 460.4 MB link
— AS_16_TGIRTMn_input_S15_L001_R1_001.unassigned.randome… OTHER 458.2 MB link
— AS_17_MaximaMn_input_S16_L001_R1_001.unassigned.random… OTHER 304.0 MB link
— AS_18_SSIII_input_S17_L001_R1_001.unassigned.randomer.… OTHER 418.6 MB link
— AS_19_Maxima_input_S18_L001_R1_001.unassigned.randomer… OTHER 961.7 MB link
— AS_1_MMLVMn_IP_S1_L001_R1_001.C01_AS_1_MMLVMn_IP_RBFOX… OTHER 141.3 MB link
— AS_1_MMLVMn_IP_S1_L001_R1_001.D08fixed_AS_1_MMLVMn_IP_… OTHER 120.1 MB link
— AS_2_SSIIMn_IP_S2_L001_R1_001.C01_AS_2_SSIIMn_IP_RBFOX… OTHER 131.4 MB link
— AS_2_SSIIMn_IP_S2_L001_R1_001.D08fixed_AS_2_SSIIMn_IP_… OTHER 118.9 MB link
— AS_3_SSIIIMn_IP_S3_L001_R1_001.C01_AS_3_SSIIIMn_IP_RBF… OTHER 129.9 MB link
— AS_3_SSIIIMn_IP_S3_L001_R1_001.D08fixed_AS_3_SSIIIMn_I… OTHER 114.6 MB link
— AS_4_SSIVMn_IP_S4_L001_R1_001.C01_AS_4_SSIVMn_IP_RBFOX… OTHER 72.0 MB link
— AS_4_SSIVMn_IP_S4_L001_R1_001.D08fixed_AS_4_SSIVMn_IP_… OTHER 51.9 MB link
— AS_5_AffScMn_IP_S5_L001_R1_001.C01_AS_5_AffScMn_IP_RBF… OTHER 116.8 MB link
— AS_5_AffScMn_IP_S5_L001_R1_001.D08fixed_AS_5_AffScMn_I… OTHER 100.2 MB link
— AS_6_TGIRTMn_IP_S6_L001_R1_001.C01_AS_6_TGIRTMn_IP_RBF… OTHER 143.5 MB link
— AS_6_TGIRTMn_IP_S6_L001_R1_001.D08fixed_AS_6_TGIRTMn_I… OTHER 89.9 MB link
— AS_7_MaximaMn_IP_S7_L001_R1_001.C01_AS_7_MaximaMn_IP_R… OTHER 72.1 MB link
— AS_7_MaximaMn_IP_S7_L001_R1_001.D08fixed_AS_7_MaximaMn… OTHER 48.1 MB link
— AS_8_SSIII_IP_S8_L001_R1_001.C01_AS_8_SSIII_IP_RBFOX2.… OTHER 134.3 MB link
— AS_8_SSIII_IP_S8_L001_R1_001.D08fixed_AS_8_SSIII_IP_RB… OTHER 116.9 MB link
— AS_9_Maxima_IP_S9_L001_R1_001.C01_AS_9_Maxima_IP_RBFOX… OTHER 129.6 MB link
— AS_9_Maxima_IP_S9_L001_R1_001.D08fixed_AS_9_Maxima_IP_… OTHER 110.0 MB link
— AS_AMV_S70_L004_R1_001.X2A_AS_AMV_RBFOX2.randomer.fast… OTHER 346.0 MB link
— AS_AMV_S70_L004_R1_001.X2B_AS_AMV_RBFOX2.randomer.fast… OTHER 201.7 MB link
— AS_FOX2_AFFSC_CLIP_S105_L008_R1_001.A01_AS_FOX2_AFFSC_… OTHER 253.1 MB link
— AS_FOX2_AFFSC_CLIP_S105_L008_R1_001.B06_AS_FOX2_AFFSC_… OTHER 237.0 MB link
— AS_FOX2_AFFSC_IN_S106_L008_R1_001.unassigned.randomer.… OTHER 529.6 MB link
— AS_FOX2_SS4_CLIP_S113_L008_R1_001.A01_AS_FOX2_SS4_CLIP… OTHER 225.2 MB link
— AS_FOX2_SS4_CLIP_S113_L008_R1_001.B06_AS_FOX2_SS4_CLIP… OTHER 201.2 MB link
— AS_FOX2_SS4_IN_S114_L008_R1_001.unassigned.randomer.fa… OTHER 102.0 MB link
— AS_FOX2_SS4_MN_CLIP_S117_L008_R1_001.A01_AS_FOX2_SS4_M… OTHER 88.1 MB link
— AS_FOX2_SS4_MN_CLIP_S117_L008_R1_001.B06_AS_FOX2_SS4_M… OTHER 70.2 MB link
— AS_FOX2_SS4_MN_IN_S118_L008_R1_001.unassigned.randomer… OTHER 199.2 MB link
— AS_FOX2_SSIII_CLIP_S109_L008_R1_001.A01_AS_FOX2_SSIII_… OTHER 269.7 MB link
— AS_FOX2_SSIII_CLIP_S109_L008_R1_001.B06_AS_FOX2_SSIII_… OTHER 251.5 MB link
— AS_FOX2_SSIII_IN_S110_L008_R1_001.unassigned.randomer.… OTHER 332.2 MB link
— AS_FOX2_TGIRT_CLIP_S121_L008_R1_001.A01_AS_FOX2_TGIRT_… OTHER 327.1 MB link
— AS_FOX2_TGIRT_CLIP_S121_L008_R1_001.B06_AS_FOX2_TGIRT_… OTHER 247.5 MB link
— AS_FOX2_TGIRT_IN_S122_L008_R1_001.unassigned.randomer.… OTHER 345.0 MB link
— AS_M_MLV_S71_L004_R1_001.X2A_AS_M_MLV_RBFOX2.randomer.… OTHER 362.0 MB link
— AS_M_MLV_S71_L004_R1_001.X2B_AS_M_MLV_RBFOX2.randomer.… OTHER 210.2 MB link
— AS_SS4Mn_S76_L004_R1_001.X2A_AS_SS4Mn_RBFOX2.randomer.… OTHER 258.1 MB link
— AS_SS4Mn_S76_L004_R1_001.X2B_AS_SS4Mn_RBFOX2.randomer.… OTHER 139.1 MB link
— AS_SSc3_S74_L004_R1_001.X2A_AS_SSc3_RBFOX2.randomer.fa… OTHER 369.8 MB link
— AS_SSc3_S74_L004_R1_001.X2B_AS_SSc3_RBFOX2.randomer.fa… OTHER 214.8 MB link
— AS_SSc4_S75_L004_R1_001.X2A_AS_SSc4_RBFOX2.randomer.fa… OTHER 344.5 MB link
— AS_SSc4_S75_L004_R1_001.X2B_AS_SSc4_RBFOX2.randomer.fa… OTHER 198.8 MB link
— AS_SuS2_S72_L004_R1_001.X2A_AS_SuS2_RBFOX2.randomer.fa… OTHER 376.6 MB link
— AS_SuS2_S72_L004_R1_001.X2B_AS_SuS2_RBFOX2.randomer.fa… OTHER 220.4 MB link
— AS_TDP_AFFSC_CLIP_S107_L008_R1_001.C01_AS_TDP_AFFSC_CL… OTHER 284.2 MB link
— AS_TDP_AFFSC_CLIP_S107_L008_R1_001.D08fixed_AS_TDP_AFF… OTHER 190.6 MB link
— AS_TDP_AFFSC_IN_S108_L008_R1_001.unassigned.randomer.f… OTHER 495.3 MB link
— AS_TDP_SS4_CLIP_S115_L008_R1_001.C01_AS_TDP_SS4_CLIP_T… OTHER 246.2 MB link
— AS_TDP_SS4_CLIP_S115_L008_R1_001.D08fixed_AS_TDP_SS4_C… OTHER 163.2 MB link
— AS_TDP_SS4_IN_S116_L008_R1_001.unassigned.randomer.fas… OTHER 506.5 MB link
— AS_TDP_SS4_MN_CLIP_S119_L008_R1_001.C01_AS_TDP_SS4_MN_… OTHER 79.3 MB link
— AS_TDP_SS4_MN_CLIP_S119_L008_R1_001.D08fixed_AS_TDP_SS… OTHER 47.5 MB link
— AS_TDP_SS4_MN_IN_S120_L008_R1_001.unassigned.randomer.… OTHER 428.3 MB link
— AS_TDP_SSIII_CLIP_S111_L008_R1_001.C01_AS_TDP_SSIII_CL… OTHER 321.9 MB link
— AS_TDP_SSIII_CLIP_S111_L008_R1_001.D08fixed_AS_TDP_SSI… OTHER 216.5 MB link
— AS_TDP_SSIII_IN_S112_L008_R1_001.unassigned.randomer.f… OTHER 660.1 MB link
— AS_TDP_TGIRT_CLIP_S123_L008_R1_001.C01_AS_TDP_TGIRT_CL… OTHER 294.9 MB link
— AS_TDP_TGIRT_CLIP_S123_L008_R1_001.D08fixed_AS_TDP_TGI… OTHER 185.3 MB link
— AS_TDP_TGIRT_IN_S124_L008_R1_001.unassigned.randomer.f… OTHER 539.9 MB link
— AS_TiGER_S77_L004_R1_001.X2A_AS_TiGER_RBFOX2.randomer.… OTHER 388.7 MB link
— AS_TiGER_S77_L004_R1_001.X2B_AS_TiGER_RBFOX2.randomer.… OTHER 206.7 MB link
— FOX2_AFFSC_L000_R1_001.A01_FOX2_AFFSC_RBFOX2.randomer.… OTHER 182.9 MB link
— FOX2_AFFSC_L000_R1_001.B06_FOX2_AFFSC_RBFOX2.randomer.… OTHER 247.0 MB link
— FOX2_SS4in3B_CLIP_-AS45_S99_L007_R1_001.A01_FOX2_SS4in… OTHER 198.3 MB link
— FOX2_SS4in3B_CLIP_-AS45_S99_L007_R1_001.B06_FOX2_SS4in… OTHER 176.4 MB link
— FOX2_SS4in3B_IN_AS46_S100_L007_R1_001.unassigned.rando… OTHER 444.0 MB link
— FOX2_SS4in3B_L000_R1_001.A01_FOX2_SS4in3B_RBFOX2.rando… OTHER 112.4 MB link
— FOX2_SS4in3B_L000_R1_001.B06_FOX2_SS4in3B_RBFOX2.rando… OTHER 150.0 MB link
— FOX2_SS4_L000_R1_001.A01_FOX2_SS4_RBFOX2.randomer.fast… OTHER 84.4 MB link
— FOX2_SS4_L000_R1_001.B06_FOX2_SS4_RBFOX2.randomer.fast… OTHER 111.6 MB link
— FOX2_SS4_MN_L000_R1_001.A01_FOX2_SS4_MN_RBFOX2.randome… OTHER 43.0 MB link
— FOX2_SS4_MN_L000_R1_001.B06_FOX2_SS4_MN_RBFOX2.randome… OTHER 45.3 MB link
— FOX2_SSIII_L000_R1_001.A01_FOX2_SSIII_RBFOX2.randomer.… OTHER 134.0 MB link
— FOX2_SSIII_L000_R1_001.B06_FOX2_SSIII_RBFOX2.randomer.… OTHER 181.2 MB link
— FOX2_TGIRT_L000_R1_001.A01_FOX2_TGIRT_RBFOX2.randomer.… OTHER 223.4 MB link
— FOX2_TGIRT_L000_R1_001.B06_FOX2_TGIRT_RBFOX2.randomer.… OTHER 241.4 MB link
— SRR5874656 OTHER 1.1 GB link
— TDP_AFFSC_L000_R1_001.C01_TDP_AFFSC_TARDBP.randomer.fa… OTHER 181.1 MB link
— TDP_AFFSC_L000_R1_001.D08fixed_TDP_AFFSC_TARDBP.random… OTHER 144.5 MB link
— TDP_SS4in3B_CLIP_AS47_S101_L007_R1_001.C01_TDP_SS4in3B… OTHER 211.9 MB link
— TDP_SS4in3B_CLIP_AS47_S101_L007_R1_001.D08fixed_TDP_SS… OTHER 139.8 MB link
— TDP_SS4in3B_IN_AS48_S102_L007_R1_001.unassigned.random… OTHER 482.2 MB link
— TDP_SS4in3B_L000_R1_001.C01_TDP_SS4in3B_TARDBP.randome… OTHER 63.5 MB link
— TDP_SS4in3B_L000_R1_001.D08fixed_TDP_SS4in3B_TARDBP.ra… OTHER 53.7 MB link
— TDP_SS4_L000_R1_001.C01_TDP_SS4_TARDBP.randomer.fastq.… OTHER 64.8 MB link
— TDP_SS4_L000_R1_001.D08fixed_TDP_SS4_TARDBP.randomer.f… OTHER 53.1 MB link
— TDP_SS4_MN_L000_R1_001.C01_TDP_SS4_MN_TARDBP.randomer.… OTHER 39.1 MB link
— TDP_SS4_MN_L000_R1_001.D08fixed_TDP_SS4_MN_TARDBP.rand… OTHER 29.0 MB link
— TDP_SSIII_L000_R1_001.C01_TDP_SSIII_TARDBP.randomer.fa… OTHER 117.8 MB link
— TDP_SSIII_L000_R1_001.D08fixed_TDP_SSIII_TARDBP.random… OTHER 96.2 MB link
— TDP_TGIRT_L000_R1_001.C01_TDP_TGIRT_TARDBP.randomer.fa… OTHER 164.0 MB link
— TDP_TGIRT_L000_R1_001.D08fixed_TDP_TGIRT_TARDBP.random… OTHER 108.8 MB link