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GSE249245

GSE GEO
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Integrated multi-omics analysis of zinc finger proteins uncovers roles in RNA regulation [Cut&Run]

Organism: Homo sapiens
Platform: GPL24676
Samples: 90
Experiment Types:
Other
Submitted: Dec 04 2023
Last Updated: Jan 03 2025
Status: Public on Sep 20 2024
Contact: Brian,,Yee (UCSD)

Relations

SubSeries of: GSE249247 BioProject: https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1048315

Summary

RNA interactome studies have revealed that hundreds of zinc finger proteins (ZFPs) are candidate RNA-binding proteins (RBPs), despite being annotated as DNA-interacting transcription factors. The RNA substrates of ZFPs and the functional significance of their potential roles as DNA- and RNA-binding proteins (DRBPs) remain largely uncharacterized. Here we present a systematic multi-omics analysis of the DNA and RNA binding targets and regulatory roles of more than 100 ZFPs representing 37 zinc finger families. We show that multiple ZFPs are novel regulators of RNA splicing, polyadenylation, or stability. ZFPs show widespread sequence-specific RNA binding ability and preferentially bind proximal to transcription start and end sites. Additionally, several ZFPs are DRBPs that bind their targets at both the DNA and RNA levels. We highlight ZNF277, a C2H2 ZFP that binds thousands of RNA targets and acts as a multi-functional RBP. We also show that ZNF473 is a DRBP that regulates the expression and splicing of cell cycle genes. Our results reveal diverse roles for ZFPs in transcriptional and post-transcriptional gene regulation, shedding light on a large class of under-studied RBPs.

Overall Design

Cut&Run of V5-tagged zinc finger proteins expressed in HEK293T cells.

Analysis (5 steps)

View Data Processing
Processing steps for GSE249245
  1. *library strategy: Cut&Run
  2. Data analysis was performed using a modified version of CUT&RUNTools 2.0.
  3. Adapters were trimmed using Trimmomatic (v0.36), followed by a second round of trimming to remove any remaining adapter overhang sequences not removed due to fragment read-through.
  4. Reads were aligned to hg38 using bowtie2 (v2.3.5.1) using preset “--very-sensitive-local,” minimum fragment length 10, and maximum fragment length 700.
  5. After removing PCR duplicates with Picard (v0.1.8), peaks were called using MACS2 (v2.2.7.1) on the default narrowPeak setting using the same-batch V5 mock IP sample as a normalization control.

Supplementary Files (1)

GSE249245_RAW.tar Download
GEO Samples (90)
GSM7931961 GSM7931962 GSM7931963 GSM7931964 GSM7931965 GSM7931966 GSM7931967 GSM7931968 GSM7931969 GSM7931970 GSM7931971 GSM7931972 GSM7931973 GSM7931974 GSM7931975 GSM7931976 GSM7931977 GSM7931978 GSM7931979 GSM7931980 GSM7931981 GSM7931982 GSM7931983 GSM7931984 GSM7931985 GSM7931986 GSM7931987 GSM7931988 GSM7931989 GSM7931990 GSM7931991 GSM7931992 GSM7931993 GSM7931994 GSM7931995 GSM7931996 GSM7931997 GSM7931998 GSM7931999 GSM7932000 GSM7932001 GSM7932002 GSM7932003 GSM7932004 GSM7932005 GSM7932006 GSM7932007 GSM7932008 GSM7932009 GSM7932010 GSM7932011 GSM7932012 GSM7932013 GSM7932014 GSM7932015 GSM7932016 GSM7932017 GSM7932018 GSM7932019 GSM7932020 GSM7932021 GSM7932022 GSM7932023 GSM7932024 GSM7932025 GSM7932026 GSM7932027 GSM7932028 GSM7932029 GSM7932030 GSM7932031 GSM7932032 GSM7932033 GSM7932034 GSM7932035 GSM7932036 GSM7932037 GSM7932038 GSM7932039 GSM7932040 GSM7932041 GSM7932042 GSM7932043 GSM7932044 GSM7932045 GSM7932046 GSM7932047 GSM7932048 GSM7932049 GSM7932050

Dataset Citations (1)

Integrated multi-omics analysis of zinc-finger proteins uncovers roles in RNA regulation.
PMID 39303722 · 2024 · Molecular cell
Maya L Gosztyla, Lijun Zhan, Sara Olson, Xintao Wei, Jack Naritomi, Grady Nguyen, Lena Street, Grant A Goda, Francisco F Cavazos, Jonathan C Schmok, Manya Jain, Easin Uddin Syed, Eunjeong Kwon, Wenhao Jin, Eric Kofman, Alexandra T Tankka, Allison Li, Valerie Gonzalez, Eric Lécuyer, Daniel Dominguez, Marko Jovanovic, Brenton R Graveley, Gene W Yeo

SRA Experiments (90) and Runs (90)

Total: 56581 MB
SRX22725646 SRP475585 OTHER PAIRED
GSM7931961: APEX2 replicate 1 Cut&Run; Homo sapiens; OTHER
Sample: SRS19714694
BioProject: PRJNA1048315
BioSample: SAMN38610943
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Sample attributes
source_name: HEK293T
cell line: HEK293T
cell type: Human embryonic kidney
genotype: APEX2
treatment: Bethyl A190-120A
geo_loc_name: missing
collection_date: missing
Original files (1)
HEK293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR27033928 6253190 637825380 208.87 APEX2_1_S101_L002_R1_001.fastq.gz, APEX2_1_S101_L002_R2_001.fastq.gz,… SRA
SRX22725647 SRP475585 OTHER PAIRED
GSM7931962: APEX2 replicate 2 Cut&Run; Homo sapiens; OTHER
Sample: SRS19714695
BioProject: PRJNA1048315
BioSample: SAMN38610942
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Sample attributes
source_name: HEK293T
cell line: HEK293T
cell type: Human embryonic kidney
genotype: APEX2
treatment: Bethyl A190-120A
geo_loc_name: missing
collection_date: missing
Original files (1)
HEK293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR27033927 4615714 470802828 152.58 APEX2_2_S102_L002_R1_001.fastq.gz, APEX2_2_S102_L002_R2_001.fastq.gz,… SRA
SRX22725648 SRP475585 OTHER PAIRED
GSM7931963: BRCA1 replicate 1 Cut&Run; Homo sapiens; OTHER
Sample: SRS19714696
BioProject: PRJNA1048315
BioSample: SAMN38610941
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Sample attributes
source_name: HEK293T
cell line: HEK293T
cell type: Human embryonic kidney
genotype: BRCA1
treatment: Bethyl A190-120A
geo_loc_name: missing
collection_date: missing
Original files (1)
HEK293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR27033926 6253380 637844760 206.38 BRCA1_1_S109_L002_R1_001.fastq.gz, BRCA1_1_S109_L002_R2_001.fastq.gz,… SRA
SRX22725649 SRP475585 OTHER PAIRED
GSM7931964: BRCA1 replicate 2 Cut&Run; Homo sapiens; OTHER
Sample: SRS19714697
BioProject: PRJNA1048315
BioSample: SAMN38610940
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Sample attributes
source_name: HEK293T
cell line: HEK293T
cell type: Human embryonic kidney
genotype: BRCA1
treatment: Bethyl A190-120A
geo_loc_name: missing
collection_date: missing
Original files (1)
HEK293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR27033925 38922878 3970133556 1250.24 BRCA1_2_S110_L002_R1_001.fastq.gz, BRCA1_2_S110_L002_R2_001.fastq.gz,… SRA
SRX22725650 SRP475585 OTHER PAIRED
GSM7931965: CISD1 replicate 1 Cut&Run; Homo sapiens; OTHER
Sample: SRS19714698
BioProject: PRJNA1048315
BioSample: SAMN38610939
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Sample attributes
source_name: HEK293T
cell line: HEK293T
cell type: Human embryonic kidney
genotype: CISD1
treatment: Bethyl A190-120A
geo_loc_name: missing
collection_date: missing
Original files (1)
HEK293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR27033924 7557966 770912532 252.82 CISD1_1_S15_L001_R1_001.fastq.gz, CISD1_1_S15_L001_R2_001.fastq.gz, S… SRA
SRX22725651 SRP475585 OTHER PAIRED
GSM7931966: CISD1 replicate 2 Cut&Run; Homo sapiens; OTHER
Sample: SRS19714699
BioProject: PRJNA1048315
BioSample: SAMN38610938
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Sample attributes
source_name: HEK293T
cell line: HEK293T
cell type: Human embryonic kidney
genotype: CISD1
treatment: Bethyl A190-120A
geo_loc_name: missing
collection_date: missing
Original files (1)
HEK293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR27033923 8536120 870684240 273.75 CISD1_2_S16_L001_R1_001.fastq.gz, CISD1_2_S16_L001_R2_001.fastq.gz, S… SRA
SRX22725652 SRP475585 OTHER PAIRED
GSM7931967: CISD2 replicate 1 Cut&Run; Homo sapiens; OTHER
Sample: SRS19714700
BioProject: PRJNA1048315
BioSample: SAMN38610937
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Sample attributes
source_name: HEK293T
cell line: HEK293T
cell type: Human embryonic kidney
genotype: CISD2
treatment: Bethyl A190-120A
geo_loc_name: missing
collection_date: missing
Original files (1)
HEK293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR27033922 3697106 377104812 121.51 CISD2_1_S119_L002_R1_001.fastq.gz, CISD2_1_S119_L002_R2_001.fastq.gz,… SRA
SRX22725653 SRP475585 OTHER PAIRED
GSM7931968: CISD2 replicate 2 Cut&Run; Homo sapiens; OTHER
Sample: SRS19714701
BioProject: PRJNA1048315
BioSample: SAMN38610936
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Sample attributes
source_name: HEK293T
cell line: HEK293T
cell type: Human embryonic kidney
genotype: CISD2
treatment: Bethyl A190-120A
geo_loc_name: missing
collection_date: missing
Original files (1)
HEK293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR27033921 3976199 405572298 131.35 CISD2_2_S120_L002_R1_001.fastq.gz, CISD2_2_S120_L002_R2_001.fastq.gz,… SRA
SRX22725654 SRP475585 OTHER PAIRED
GSM7931969: CNBP replicate 1 Cut&Run; Homo sapiens; OTHER
Sample: SRS19714702
BioProject: PRJNA1048315
BioSample: SAMN38610935
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Sample attributes
source_name: HEK293T
cell line: HEK293T
cell type: Human embryonic kidney
genotype: CNBP
treatment: Bethyl A190-120A
geo_loc_name: missing
collection_date: missing
Original files (1)
HEK293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR27033920 16819865 1715626230 539.85 CNBP_1_S13_L001_R1_001.fastq.gz, CNBP_1_S13_L001_R2_001.fastq.gz, SRR… SRA
SRX22725655 SRP475585 OTHER PAIRED
GSM7931970: CNBP replicate 2 Cut&Run; Homo sapiens; OTHER
Sample: SRS19714703
BioProject: PRJNA1048315
BioSample: SAMN38610934
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Sample attributes
source_name: HEK293T
cell line: HEK293T
cell type: Human embryonic kidney
genotype: CNBP
treatment: Bethyl A190-120A
geo_loc_name: missing
collection_date: missing
Original files (1)
HEK293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR27033919 14010084 1429028568 444.69 CNBP_2_S14_L001_R1_001.fastq.gz, CNBP_2_S14_L001_R2_001.fastq.gz, SRR… SRA
SRX22725656 SRP475585 OTHER PAIRED
GSM7931971: CNOT4 replicate 1 Cut&Run; Homo sapiens; OTHER
Sample: SRS19714704
BioProject: PRJNA1048315
BioSample: SAMN38610933
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Sample attributes
source_name: HEK293T
cell line: HEK293T
cell type: Human embryonic kidney
genotype: CNOT4
treatment: Bethyl A190-120A
geo_loc_name: missing
collection_date: missing
Original files (1)
HEK293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR27033918 2963883 302316066 98.29 CNOT4_1_S115_L002_R1_001.fastq.gz, CNOT4_1_S115_L002_R2_001.fastq.gz,… SRA
SRX22725657 SRP475585 OTHER PAIRED
GSM7931972: CNOT4 replicate 2 Cut&Run; Homo sapiens; OTHER
Sample: SRS19714705
BioProject: PRJNA1048315
BioSample: SAMN38610932
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Sample attributes
source_name: HEK293T
cell line: HEK293T
cell type: Human embryonic kidney
genotype: CNOT4
treatment: Bethyl A190-120A
geo_loc_name: missing
collection_date: missing
Original files (1)
HEK293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR27033917 3439082 350786364 115.21 CNOT4_2_S116_L002_R1_001.fastq.gz, CNOT4_2_S116_L002_R2_001.fastq.gz,… SRA
SRX22725658 SRP475585 OTHER PAIRED
GSM7931973: CPSF4L replicate 1 Cut&Run; Homo sapiens; OTHER
Sample: SRS19714706
BioProject: PRJNA1048315
BioSample: SAMN38610931
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Sample attributes
source_name: HEK293T
cell line: HEK293T
cell type: Human embryonic kidney
genotype: CPSF4L
treatment: Bethyl A190-120A
geo_loc_name: missing
collection_date: missing
Original files (1)
HEK293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR27033916 5368628 1621325656 530.26 CPSF4L_1_S56_R1_001.fastq.gz, CPSF4L_1_S56_R2_001.fastq.gz, SRR270339… SRA
SRX22725659 SRP475585 OTHER PAIRED
GSM7931974: CPSF4L replicate 2 Cut&Run; Homo sapiens; OTHER
Sample: SRS19714707
BioProject: PRJNA1048315
BioSample: SAMN38610930
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Sample attributes
source_name: HEK293T
cell line: HEK293T
cell type: Human embryonic kidney
genotype: CPSF4L
treatment: Bethyl A190-120A
geo_loc_name: missing
collection_date: missing
Original files (1)
HEK293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR27033915 4092198 1235843796 408.85 CPSF4L_2_S57_R1_001.fastq.gz, CPSF4L_2_S57_R2_001.fastq.gz, SRR270339… SRA
SRX22725660 SRP475585 OTHER PAIRED
GSM7931975: CPSF4 replicate 1 Cut&Run; Homo sapiens; OTHER
Sample: SRS19714708
BioProject: PRJNA1048315
BioSample: SAMN38610929
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Sample attributes
source_name: HEK293T
cell line: HEK293T
cell type: Human embryonic kidney
genotype: CPSF4
treatment: Bethyl A190-120A
geo_loc_name: missing
collection_date: missing
Original files (1)
HEK293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR27033914 6281333 640695966 211.49 CPSF4_1_S93_L002_R1_001.fastq.gz, CPSF4_1_S93_L002_R2_001.fastq.gz, S… SRA
SRX22725661 SRP475585 OTHER PAIRED
GSM7931976: CPSF4 replicate 2 Cut&Run; Homo sapiens; OTHER
Sample: SRS19714709
BioProject: PRJNA1048315
BioSample: SAMN38610928
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Sample attributes
source_name: HEK293T
cell line: HEK293T
cell type: Human embryonic kidney
genotype: CPSF4
treatment: Bethyl A190-120A
geo_loc_name: missing
collection_date: missing
Original files (1)
HEK293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR27033913 4882433 498008166 162.93 CPSF4_2_S94_L002_R1_001.fastq.gz, CPSF4_2_S94_L002_R2_001.fastq.gz, S… SRA
SRX22725662 SRP475585 OTHER PAIRED
GSM7931977: CTCF replicate 1 Cut&Run; Homo sapiens; OTHER
Sample: SRS19714710
BioProject: PRJNA1048315
BioSample: SAMN38610927
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Sample attributes
source_name: HEK293T
cell line: HEK293T
cell type: Human embryonic kidney
genotype: CTCF
treatment: Bethyl A190-120A
geo_loc_name: missing
collection_date: missing
Original files (1)
HEK293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR27033912 11826520 3571609040 1128.15 CTCF_1_S28_L001_R1_001.fastq.gz, CTCF_1_S28_L001_R2_001.fastq.gz, SRR… SRA
SRX22725663 SRP475585 OTHER PAIRED
GSM7931978: CTCF replicate 2 Cut&Run; Homo sapiens; OTHER
Sample: SRS19714711
BioProject: PRJNA1048315
BioSample: SAMN38610926
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Sample attributes
source_name: HEK293T
cell line: HEK293T
cell type: Human embryonic kidney
genotype: CTCF
treatment: Bethyl A190-120A
geo_loc_name: missing
collection_date: missing
Original files (1)
HEK293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR27033911 8216694 2481441588 783.9 CTCF_2_S29_L001_R1_001.fastq.gz, CTCF_2_S29_L001_R2_001.fastq.gz, SRR… SRA
SRX22725664 SRP475585 OTHER PAIRED
GSM7931979: ERI2 replicate 1 Cut&Run; Homo sapiens; OTHER
Sample: SRS19714712
BioProject: PRJNA1048315
BioSample: SAMN38610925
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Sample attributes
source_name: HEK293T
cell line: HEK293T
cell type: Human embryonic kidney
genotype: ERI2
treatment: Bethyl A190-120A
geo_loc_name: missing
collection_date: missing
Original files (1)
HEK293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR27033910 3857556 393470712 129.92 ERI2_1_S99_L002_R1_001.fastq.gz, ERI2_1_S99_L002_R2_001.fastq.gz, SRR… SRA
SRX22725665 SRP475585 OTHER PAIRED
GSM7931980: ERI2 replicate 2 Cut&Run; Homo sapiens; OTHER
Sample: SRS19714713
BioProject: PRJNA1048315
BioSample: SAMN38610924
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Sample attributes
source_name: HEK293T
cell line: HEK293T
cell type: Human embryonic kidney
genotype: ERI2
treatment: Bethyl A190-120A
geo_loc_name: missing
collection_date: missing
Original files (1)
HEK293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR27033909 6429712 655830624 217.14 ERI2_2_S100_L002_R1_001.fastq.gz, ERI2_2_S100_L002_R2_001.fastq.gz, S… SRA
SRX22725666 SRP475585 OTHER PAIRED
GSM7931981: FUS replicate 1 Cut&Run; Homo sapiens; OTHER
Sample: SRS19714714
BioProject: PRJNA1048315
BioSample: SAMN38610923
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Sample attributes
source_name: HEK293T
cell line: HEK293T
cell type: Human embryonic kidney
genotype: FUS
treatment: Bethyl A190-120A
geo_loc_name: missing
collection_date: missing
Original files (1)
HEK293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR27033908 55646778 5675971356 1797.57 FUS_1_S107_L002_R1_001.fastq.gz, FUS_1_S107_L002_R2_001.fastq.gz, SRR… SRA
SRX22725667 SRP475585 OTHER PAIRED
GSM7931982: FUS replicate 2 Cut&Run; Homo sapiens; OTHER
Sample: SRS19714715
BioProject: PRJNA1048315
BioSample: SAMN38610922
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Sample attributes
source_name: HEK293T
cell line: HEK293T
cell type: Human embryonic kidney
genotype: FUS
treatment: Bethyl A190-120A
geo_loc_name: missing
collection_date: missing
Original files (1)
HEK293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR27033907 4680699 477431298 156.51 FUS_2_S108_L002_R1_001.fastq.gz, FUS_2_S108_L002_R2_001.fastq.gz, SRR… SRA
SRX22725668 SRP475585 OTHER PAIRED
GSM7931983: G2E3 replicate 1 Cut&Run; Homo sapiens; OTHER
Sample: SRS19714716
BioProject: PRJNA1048315
BioSample: SAMN38610921
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Sample attributes
source_name: HEK293T
cell line: HEK293T
cell type: Human embryonic kidney
genotype: G2E3
treatment: Bethyl A190-120A
geo_loc_name: missing
collection_date: missing
Original files (1)
HEK293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR27033906 3300968 336698736 120.07 G2E3_1_S79_L002_R1_001.fastq.gz, G2E3_1_S79_L002_R2_001.fastq.gz, SRR… SRA
SRX22725669 SRP475585 OTHER PAIRED
GSM7931984: G2E3 replicate 2 Cut&Run; Homo sapiens; OTHER
Sample: SRS19714717
BioProject: PRJNA1048315
BioSample: SAMN38610920
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Sample attributes
source_name: HEK293T
cell line: HEK293T
cell type: Human embryonic kidney
genotype: G2E3
treatment: Bethyl A190-120A
geo_loc_name: missing
collection_date: missing
Original files (1)
HEK293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR27033905 5796224 591214848 205.46 G2E3_2_S80_L002_R1_001.fastq.gz, G2E3_2_S80_L002_R2_001.fastq.gz, SRR… SRA
SRX22725670 SRP475585 OTHER PAIRED
GSM7931985: GIN1 replicate 1 Cut&Run; Homo sapiens; OTHER
Sample: SRS19714718
BioProject: PRJNA1048315
BioSample: SAMN38610919
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Sample attributes
source_name: HEK293T
cell line: HEK293T
cell type: Human embryonic kidney
genotype: GIN1
treatment: Bethyl A190-120A
geo_loc_name: missing
collection_date: missing
Original files (1)
HEK293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR27033904 9311843 949807986 316.11 GIN1_1_S81_L002_R1_001.fastq.gz, GIN1_1_S81_L002_R2_001.fastq.gz, SRR… SRA
SRX22725671 SRP475585 OTHER PAIRED
GSM7931986: GIN1 replicate 2 Cut&Run; Homo sapiens; OTHER
Sample: SRS19714719
BioProject: PRJNA1048315
BioSample: SAMN38610918
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Sample attributes
source_name: HEK293T
cell line: HEK293T
cell type: Human embryonic kidney
genotype: GIN1
treatment: Bethyl A190-120A
geo_loc_name: missing
collection_date: missing
Original files (1)
HEK293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR27033903 8685485 885919470 290.88 GIN1_2_S82_L002_R1_001.fastq.gz, GIN1_2_S82_L002_R2_001.fastq.gz, SRR… SRA
SRX22725672 SRP475585 OTHER PAIRED
GSM7931987: GTF3C4 replicate 1 Cut&Run; Homo sapiens; OTHER
Sample: SRS19714720
BioProject: PRJNA1048315
BioSample: SAMN38610917
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Sample attributes
source_name: HEK293T
cell line: HEK293T
cell type: Human embryonic kidney
genotype: GTF3C4
treatment: Bethyl A190-120A
geo_loc_name: missing
collection_date: missing
Original files (1)
HEK293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR27033902 48606831 9721366200 3010.56 GTF3C4-1_S49_R1_001.fastq.gz, GTF3C4-1_S49_R2_001.fastq.gz, SRR270339… SRA
SRX22725673 SRP475585 OTHER PAIRED
GSM7931988: GTF3C4 replicate 2 Cut&Run; Homo sapiens; OTHER
Sample: SRS19714721
BioProject: PRJNA1048315
BioSample: SAMN38610916
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Sample attributes
source_name: HEK293T
cell line: HEK293T
cell type: Human embryonic kidney
genotype: GTF3C4
treatment: Bethyl A190-120A
geo_loc_name: missing
collection_date: missing
Original files (1)
HEK293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR27033901 40755241 8151048200 2526.53 GTF3C4-2_S50_R1_001.fastq.gz, GTF3C4-2_S50_R2_001.fastq.gz, SRR270339… SRA
SRX22725674 SRP475585 OTHER PAIRED
GSM7931989: IGHMBP2 replicate 1 Cut&Run; Homo sapiens; OTHER
Sample: SRS19714722
BioProject: PRJNA1048315
BioSample: SAMN38610915
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Sample attributes
source_name: HEK293T
cell line: HEK293T
cell type: Human embryonic kidney
genotype: IGHMBP2
treatment: Bethyl A190-120A
geo_loc_name: missing
collection_date: missing
Original files (1)
HEK293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR27033900 10120975 1032339450 333.27 IGHMBP2_1_S125_L002_R1_001.fastq.gz, IGHMBP2_1_S125_L002_R2_001.fastq… SRA
SRX22725675 SRP475585 OTHER PAIRED
GSM7931990: IGHMBP2 replicate 2 Cut&Run; Homo sapiens; OTHER
Sample: SRS19714723
BioProject: PRJNA1048315
BioSample: SAMN38610914
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Sample attributes
source_name: HEK293T
cell line: HEK293T
cell type: Human embryonic kidney
genotype: IGHMBP2
treatment: Bethyl A190-120A
geo_loc_name: missing
collection_date: missing
Original files (1)
HEK293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR27033899 5597551 570950202 181.24 IGHMBP2_2_S126_L002_R1_001.fastq.gz, IGHMBP2_2_S126_L002_R2_001.fastq… SRA
SRX22725676 SRP475585 OTHER PAIRED
GSM7931991: LIN28B replicate 1 Cut&Run; Homo sapiens; OTHER
Sample: SRS19714724
BioProject: PRJNA1048315
BioSample: SAMN38610913
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Sample attributes
source_name: HEK293T
cell line: HEK293T
cell type: Human embryonic kidney
genotype: LIN28B
treatment: Bethyl A190-120A
geo_loc_name: missing
collection_date: missing
Original files (1)
HEK293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR27033898 34934306 3563299212 1115.63 LIN28B_1_S7_L001_R1_001.fastq.gz, LIN28B_1_S7_L001_R2_001.fastq.gz, S… SRA
SRX22725677 SRP475585 OTHER PAIRED
GSM7931992: LIN28B replicate 2 Cut&Run; Homo sapiens; OTHER
Sample: SRS19714725
BioProject: PRJNA1048315
BioSample: SAMN38610912
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Sample attributes
source_name: HEK293T
cell line: HEK293T
cell type: Human embryonic kidney
genotype: LIN28B
treatment: Bethyl A190-120A
geo_loc_name: missing
collection_date: missing
Original files (1)
HEK293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR27033897 52191397 5323522494 1658.32 LIN28B_2_S8_L001_R1_001.fastq.gz, LIN28B_2_S8_L001_R2_001.fastq.gz, S… SRA
SRX22725678 SRP475585 OTHER PAIRED
GSM7931993: MAZ replicate 1 Cut&Run; Homo sapiens; OTHER
Sample: SRS19714726
BioProject: PRJNA1048315
BioSample: SAMN38610911
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Sample attributes
source_name: HEK293T
cell line: HEK293T
cell type: Human embryonic kidney
genotype: MAZ
treatment: Bethyl A190-120A
geo_loc_name: missing
collection_date: missing
Original files (1)
HEK293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR27033896 8707618 1758938836 534.99 MAZ_1_R1_001.fastq.gz, MAZ_1_R2_001.fastq.gz, SRR27033896, SRR2703389… SRA
SRX22725679 SRP475585 OTHER PAIRED
GSM7931994: MAZ replicate 2 Cut&Run; Homo sapiens; OTHER
Sample: SRS19714727
BioProject: PRJNA1048315
BioSample: SAMN38610910
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Sample attributes
source_name: HEK293T
cell line: HEK293T
cell type: Human embryonic kidney
genotype: MAZ
treatment: Bethyl A190-120A
geo_loc_name: missing
collection_date: missing
Original files (1)
HEK293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR27033895 23928023 4833460646 1453.72 MAZ_2_R1_001.fastq.gz, MAZ_2_R2_001.fastq.gz, SRR27033895, SRR2703389… SRA
SRX22725680 SRP475585 OTHER PAIRED
GSM7931995: MBNL1 replicate 1 Cut&Run; Homo sapiens; OTHER
Sample: SRS19714728
BioProject: PRJNA1048315
BioSample: SAMN38610909
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Sample attributes
source_name: HEK293T
cell line: HEK293T
cell type: Human embryonic kidney
genotype: MBNL1
treatment: Bethyl A190-120A
geo_loc_name: missing
collection_date: missing
Original files (1)
HEK293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR27033894 52915 5397330 2.0 MBNL1_1_S89_L002_R1_001.fastq.gz, MBNL1_1_S89_L002_R2_001.fastq.gz, S… SRA
SRX22725681 SRP475585 OTHER PAIRED
GSM7931996: MBNL1 replicate 2 Cut&Run; Homo sapiens; OTHER
Sample: SRS19714729
BioProject: PRJNA1048315
BioSample: SAMN38610908
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Sample attributes
source_name: HEK293T
cell line: HEK293T
cell type: Human embryonic kidney
genotype: MBNL1
treatment: Bethyl A190-120A
geo_loc_name: missing
collection_date: missing
Original files (1)
HEK293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR27033893 4776644 487217688 155.35 MBNL1_2_S90_L002_R1_001.fastq.gz, MBNL1_2_S90_L002_R2_001.fastq.gz, S… SRA
SRX22725682 SRP475585 OTHER PAIRED
GSM7931997: NANOS2 replicate 1 Cut&Run; Homo sapiens; OTHER
Sample: SRS19714730
BioProject: PRJNA1048315
BioSample: SAMN38610907
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Sample attributes
source_name: HEK293T
cell line: HEK293T
cell type: Human embryonic kidney
genotype: NANOS2
treatment: Bethyl A190-120A
geo_loc_name: missing
collection_date: missing
Original files (1)
HEK293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR27033892 3908187 398635074 129.67 NANOS2_1_S111_L002_R1_001.fastq.gz, NANOS2_1_S111_L002_R2_001.fastq.g… SRA
SRX22725683 SRP475585 OTHER PAIRED
GSM7931998: NANOS2 replicate 2 Cut&Run; Homo sapiens; OTHER
Sample: SRS19714731
BioProject: PRJNA1048315
BioSample: SAMN38610906
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Sample attributes
source_name: HEK293T
cell line: HEK293T
cell type: Human embryonic kidney
genotype: NANOS2
treatment: Bethyl A190-120A
geo_loc_name: missing
collection_date: missing
Original files (1)
HEK293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR27033891 5553391 566445882 182.89 NANOS2_2_S112_L002_R1_001.fastq.gz, NANOS2_2_S112_L002_R2_001.fastq.g… SRA
SRX22725684 SRP475585 OTHER PAIRED
GSM7931999: PHF7 replicate 1 Cut&Run; Homo sapiens; OTHER
Sample: SRS19714732
BioProject: PRJNA1048315
BioSample: SAMN38610905
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Sample attributes
source_name: HEK293T
cell line: HEK293T
cell type: Human embryonic kidney
genotype: PHF7
treatment: Bethyl A190-120A
geo_loc_name: missing
collection_date: missing
Original files (1)
HEK293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR27033890 6965008 710430816 238.4 PHF7_1_S91_L002_R1_001.fastq.gz, PHF7_1_S91_L002_R2_001.fastq.gz, SRR… SRA
SRX22725685 SRP475585 OTHER PAIRED
GSM7932000: PHF7 replicate 2 Cut&Run; Homo sapiens; OTHER
Sample: SRS19714733
BioProject: PRJNA1048315
BioSample: SAMN38610904
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Sample attributes
source_name: HEK293T
cell line: HEK293T
cell type: Human embryonic kidney
genotype: PHF7
treatment: Bethyl A190-120A
geo_loc_name: missing
collection_date: missing
Original files (1)
HEK293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR27033889 6164838 628813476 201.97 PHF7_2_S92_L002_R1_001.fastq.gz, PHF7_2_S92_L002_R2_001.fastq.gz, SRR… SRA
SRX22725686 SRP475585 OTHER PAIRED
GSM7932001: RBM5 replicate 1 Cut&Run; Homo sapiens; OTHER
Sample: SRS19714734
BioProject: PRJNA1048315
BioSample: SAMN38610903
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Sample attributes
source_name: HEK293T
cell line: HEK293T
cell type: Human embryonic kidney
genotype: RBM5
treatment: Bethyl A190-120A
geo_loc_name: missing
collection_date: missing
Original files (1)
HEK293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR27033888 5228104 1578887408 516.62 RBM5_1_S54_R1_001.fastq.gz, RBM5_1_S54_R2_001.fastq.gz, SRR27033888, … SRA
SRX22725687 SRP475585 OTHER PAIRED
GSM7932002: RBM5 replicate 2 Cut&Run; Homo sapiens; OTHER
Sample: SRS19714735
BioProject: PRJNA1048315
BioSample: SAMN38610902
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Sample attributes
source_name: HEK293T
cell line: HEK293T
cell type: Human embryonic kidney
genotype: RBM5
treatment: Bethyl A190-120A
geo_loc_name: missing
collection_date: missing
Original files (1)
HEK293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR27033887 8890833 2685031566 865.57 RBM5_2_S55_R1_001.fastq.gz, RBM5_2_S55_R2_001.fastq.gz, SRR27033887, … SRA
SRX22725688 SRP475585 OTHER PAIRED
GSM7932003: RNF113A replicate 1 Cut&Run; Homo sapiens; OTHER
Sample: SRS19714736
BioProject: PRJNA1048315
BioSample: SAMN38610901
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Sample attributes
source_name: HEK293T
cell line: HEK293T
cell type: Human embryonic kidney
genotype: RNF113A
treatment: Bethyl A190-120A
geo_loc_name: missing
collection_date: missing
Original files (1)
HEK293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR27033886 9246483 2792437866 950.6 RNF113A_1_S58_R1_001.fastq.gz, RNF113A_1_S58_R2_001.fastq.gz, SRR2703… SRA
SRX22725689 SRP475585 OTHER PAIRED
GSM7932004: RNF113A replicate 2 Cut&Run; Homo sapiens; OTHER
Sample: SRS19714737
BioProject: PRJNA1048315
BioSample: SAMN38610900
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Sample attributes
source_name: HEK293T
cell line: HEK293T
cell type: Human embryonic kidney
genotype: RNF113A
treatment: Bethyl A190-120A
geo_loc_name: missing
collection_date: missing
Original files (1)
HEK293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR27033885 10859498 3279568396 1082.94 RNF113A_2_S69_R1_001.fastq.gz, RNF113A_2_S69_R2_001.fastq.gz, SRR2703… SRA
SRX22725690 SRP475585 OTHER PAIRED
GSM7932005: RNF14 replicate 1 Cut&Run; Homo sapiens; OTHER
Sample: SRS19714738
BioProject: PRJNA1048315
BioSample: SAMN38610899
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Sample attributes
source_name: HEK293T
cell line: HEK293T
cell type: Human embryonic kidney
genotype: RNF14
treatment: Bethyl A190-120A
geo_loc_name: missing
collection_date: missing
Original files (1)
HEK293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR27033884 28709690 5741938000 1768.87 RNF14-1_S45_R1_001.fastq.gz, RNF14-1_S45_R2_001.fastq.gz, SRR27033884… SRA
SRX22725691 SRP475585 OTHER PAIRED
GSM7932006: RNF14 replicate 2 Cut&Run; Homo sapiens; OTHER
Sample: SRS19714739
BioProject: PRJNA1048315
BioSample: SAMN38610898
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Sample attributes
source_name: HEK293T
cell line: HEK293T
cell type: Human embryonic kidney
genotype: RNF14
treatment: Bethyl A190-120A
geo_loc_name: missing
collection_date: missing
Original files (1)
HEK293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR27033883 24063780 4812756000 1483.88 RNF14-2_S46_R1_001.fastq.gz, RNF14-2_S46_R2_001.fastq.gz, SRR27033883… SRA
SRX22725692 SRP475585 OTHER PAIRED
GSM7932007: SALL4 replicate 1 Cut&Run; Homo sapiens; OTHER
Sample: SRS19714740
BioProject: PRJNA1048315
BioSample: SAMN38610897
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Sample attributes
source_name: HEK293T
cell line: HEK293T
cell type: Human embryonic kidney
genotype: SALL4
treatment: Bethyl A190-120A
geo_loc_name: missing
collection_date: missing
Original files (1)
HEK293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR27033882 55975605 5709511710 1768.13 SALL4_1_S9_L001_R1_001.fastq.gz, SALL4_1_S9_L001_R2_001.fastq.gz, SRR… SRA
SRX22725693 SRP475585 OTHER PAIRED
GSM7932008: SALL4 replicate 2 Cut&Run; Homo sapiens; OTHER
Sample: SRS19714741
BioProject: PRJNA1048315
BioSample: SAMN38610896
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Sample attributes
source_name: HEK293T
cell line: HEK293T
cell type: Human embryonic kidney
genotype: SALL4
treatment: Bethyl A190-120A
geo_loc_name: missing
collection_date: missing
Original files (1)
HEK293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR27033881 5298779 540475458 168.82 SALL4_2_S10_L001_R1_001.fastq.gz, SALL4_2_S10_L001_R2_001.fastq.gz, S… SRA
SRX22725694 SRP475585 OTHER PAIRED
GSM7932009: SNRPC replicate 1 Cut&Run; Homo sapiens; OTHER
Sample: SRS19714742
BioProject: PRJNA1048315
BioSample: SAMN38610895
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Sample attributes
source_name: HEK293T
cell line: HEK293T
cell type: Human embryonic kidney
genotype: SNRPC
treatment: Bethyl A190-120A
geo_loc_name: missing
collection_date: missing
Original files (1)
HEK293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR27033880 4579393 467098086 155.1 SNRPC_1_S85_L002_R1_001.fastq.gz, SNRPC_1_S85_L002_R2_001.fastq.gz, S… SRA
SRX22725695 SRP475585 OTHER PAIRED
GSM7932010: SNRPC replicate 2 Cut&Run; Homo sapiens; OTHER
Sample: SRS19714743
BioProject: PRJNA1048315
BioSample: SAMN38610894
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Sample attributes
source_name: HEK293T
cell line: HEK293T
cell type: Human embryonic kidney
genotype: SNRPC
treatment: Bethyl A190-120A
geo_loc_name: missing
collection_date: missing
Original files (1)
HEK293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR27033879 6192238 631608276 202.52 SNRPC_2_S86_L002_R1_001.fastq.gz, SNRPC_2_S86_L002_R2_001.fastq.gz, S… SRA
SRX22725696 SRP475585 OTHER PAIRED
GSM7932011: TEX13A replicate 1 Cut&Run; Homo sapiens; OTHER
Sample: SRS19714745
BioProject: PRJNA1048315
BioSample: SAMN38610893
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Sample attributes
source_name: HEK293T
cell line: HEK293T
cell type: Human embryonic kidney
genotype: TEX13A
treatment: Bethyl A190-120A
geo_loc_name: missing
collection_date: missing
Original files (1)
HEK293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR27033878 4512314 460256028 150.44 TEX13A_1_S117_L002_R1_001.fastq.gz, TEX13A_1_S117_L002_R2_001.fastq.g… SRA
SRX22725697 SRP475585 OTHER PAIRED
GSM7932036: ZNF317 replicate 2 Cut&Run; Homo sapiens; OTHER
Sample: SRS19714744
BioProject: PRJNA1048315
BioSample: SAMN38610868
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Sample attributes
source_name: HEK293T
cell line: HEK293T
cell type: Human embryonic kidney
genotype: ZNF317
treatment: Bethyl A190-120A
geo_loc_name: missing
collection_date: missing
Original files (1)
HEK293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR27033877 4533914 462459228 143.37 ZNF317_2_S18_L001_R1_001.fastq.gz, ZNF317_2_S18_L001_R2_001.fastq.gz,… SRA
SRX22725698 SRP475585 OTHER PAIRED
GSM7932037: ZNF473 RBD-deleted replicate 1 Cut&Run; Homo sapiens; OTHER
Sample: SRS19714746
BioProject: PRJNA1048315
BioSample: SAMN38610867
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Sample attributes
source_name: HEK293T
cell line: HEK293T
cell type: Human embryonic kidney
genotype: ZNF473 RBD-deleted
treatment: Bethyl A190-120A
geo_loc_name: missing
collection_date: missing
Original files (1)
HEK293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR27033876 28092623 5618524600 1748.34 ZNF473-DEL-1_S60_R1_001.fastq.gz, ZNF473-DEL-1_S60_R2_001.fastq.gz, S… SRA
SRX22725699 SRP475585 OTHER PAIRED
GSM7932038: ZNF473 RBD-deleted replicate 2 Cut&Run; Homo sapiens; OTHER
Sample: SRS19714747
BioProject: PRJNA1048315
BioSample: SAMN38610866
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Sample attributes
source_name: HEK293T
cell line: HEK293T
cell type: Human embryonic kidney
genotype: ZNF473 RBD-deleted
treatment: Bethyl A190-120A
geo_loc_name: missing
collection_date: missing
Original files (1)
HEK293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR27033875 24364653 4872930600 1508.7 ZNF473-DEL-2_S61_R1_001.fastq.gz, ZNF473-DEL-2_S61_R2_001.fastq.gz, S… SRA
SRX22725700 SRP475585 OTHER PAIRED
GSM7932039: ZNF473 RBD-wild type replicate 1 Cut&Run; Homo sapiens; OTHER
Sample: SRS19714748
BioProject: PRJNA1048315
BioSample: SAMN38610865
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Sample attributes
source_name: HEK293T
cell line: HEK293T
cell type: Human embryonic kidney
genotype: ZNF473 RBD-wild type
treatment: Bethyl A190-120A
geo_loc_name: missing
collection_date: missing
Original files (1)
HEK293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR27033874 29915285 5983057000 1847.94 ZNF473-WT-1_S58_R1_001.fastq.gz, ZNF473-WT-1_S58_R2_001.fastq.gz, SRR… SRA
SRX22725701 SRP475585 OTHER PAIRED
GSM7932040: ZNF473 RBD-wild type replicate 2 Cut&Run; Homo sapiens; OTHER
Sample: SRS19714749
BioProject: PRJNA1048315
BioSample: SAMN38610864
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Sample attributes
source_name: HEK293T
cell line: HEK293T
cell type: Human embryonic kidney
genotype: ZNF473 RBD-wild type
treatment: Bethyl A190-120A
geo_loc_name: missing
collection_date: missing
Original files (1)
HEK293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR27033873 26365829 5273165800 1635.51 ZNF473-WT-2_S59_R1_001.fastq.gz, ZNF473-WT-2_S59_R2_001.fastq.gz, SRR… SRA
SRX22725702 SRP475585 OTHER PAIRED
GSM7932041: ZNF473 replicate 1 Cut&Run; Homo sapiens; OTHER
Sample: SRS19714750
BioProject: PRJNA1048315
BioSample: SAMN38610863
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Sample attributes
source_name: HEK293T
cell line: HEK293T
cell type: Human embryonic kidney
genotype: ZNF473
treatment: Bethyl A190-120A
geo_loc_name: missing
collection_date: missing
Original files (1)
HEK293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR27033872 4523298 461376396 155.18 ZNF473_1_S83_L002_R1_001.fastq.gz, ZNF473_1_S83_L002_R2_001.fastq.gz,… SRA
SRX22725703 SRP475585 OTHER PAIRED
GSM7932042: ZNF473 replicate 2 Cut&Run; Homo sapiens; OTHER
Sample: SRS19714751
BioProject: PRJNA1048315
BioSample: SAMN38610862
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Sample attributes
source_name: HEK293T
cell line: HEK293T
cell type: Human embryonic kidney
genotype: ZNF473
treatment: Bethyl A190-120A
geo_loc_name: missing
collection_date: missing
Original files (1)
HEK293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR27033871 6403725 653179950 216.15 ZNF473_2_S84_L002_R1_001.fastq.gz, ZNF473_2_S84_L002_R2_001.fastq.gz,… SRA
SRX22725704 SRP475585 OTHER PAIRED
GSM7932043: ZNF574 replicate 1 Cut&Run; Homo sapiens; OTHER
Sample: SRS19714752
BioProject: PRJNA1048315
BioSample: SAMN38610861
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Sample attributes
source_name: HEK293T
cell line: HEK293T
cell type: Human embryonic kidney
genotype: ZNF574
treatment: Bethyl A190-120A
geo_loc_name: missing
collection_date: missing
Original files (1)
HEK293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR27033870 51285728 10257145600 3149.93 ZNF574-1_S47_R1_001.fastq.gz, ZNF574-1_S47_R2_001.fastq.gz, SRR270338… SRA
SRX22725705 SRP475585 OTHER PAIRED
GSM7932044: ZNF574 replicate 2 Cut&Run; Homo sapiens; OTHER
Sample: SRS19714754
BioProject: PRJNA1048315
BioSample: SAMN38610860
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Sample attributes
source_name: HEK293T
cell line: HEK293T
cell type: Human embryonic kidney
genotype: ZNF574
treatment: Bethyl A190-120A
geo_loc_name: missing
collection_date: missing
Original files (1)
HEK293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR27033869 36182081 7236416200 2235.49 ZNF574-2_S48_R1_001.fastq.gz, ZNF574-2_S48_R2_001.fastq.gz, SRR270338… SRA
SRX22725706 SRP475585 OTHER PAIRED
GSM7932045: ZNF593 replicate 1 Cut&Run; Homo sapiens; OTHER
Sample: SRS19714753
BioProject: PRJNA1048315
BioSample: SAMN38610859
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Sample attributes
source_name: HEK293T
cell line: HEK293T
cell type: Human embryonic kidney
genotype: ZNF593
treatment: Bethyl A190-120A
geo_loc_name: missing
collection_date: missing
Original files (1)
HEK293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR27033868 15214094 3073246988 931.46 ZNF593_1_R1_001.fastq.gz, ZNF593_1_R2_001.fastq.gz, SRR27033868, SRR2… SRA
SRX22725707 SRP475585 OTHER PAIRED
GSM7932046: ZNF593 replicate 2 Cut&Run; Homo sapiens; OTHER
Sample: SRS19714755
BioProject: PRJNA1048315
BioSample: SAMN38610858
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Sample attributes
source_name: HEK293T
cell line: HEK293T
cell type: Human embryonic kidney
genotype: ZNF593
treatment: Bethyl A190-120A
geo_loc_name: missing
collection_date: missing
Original files (1)
HEK293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR27033867 15575379 3146226558 952.85 ZNF593_2_R1_001.fastq.gz, ZNF593_2_R2_001.fastq.gz, SRR27033867, SRR2… SRA
SRX22725708 SRP475585 OTHER PAIRED
GSM7932047: ZNF706 replicate 1 Cut&Run; Homo sapiens; OTHER
Sample: SRS19714756
BioProject: PRJNA1048315
BioSample: SAMN38610857
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Sample attributes
source_name: HEK293T
cell line: HEK293T
cell type: Human embryonic kidney
genotype: ZNF706
treatment: Bethyl A190-120A
geo_loc_name: missing
collection_date: missing
Original files (1)
HEK293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR27033866 16074414 3214882800 996.15 ZNF706-1_S41_R1_001.fastq.gz, ZNF706-1_S41_R2_001.fastq.gz, SRR270338… SRA
SRX22725709 SRP475585 OTHER PAIRED
GSM7932048: ZNF706 replicate 2 Cut&Run; Homo sapiens; OTHER
Sample: SRS19714757
BioProject: PRJNA1048315
BioSample: SAMN38610856
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Sample attributes
source_name: HEK293T
cell line: HEK293T
cell type: Human embryonic kidney
genotype: ZNF706
treatment: Bethyl A190-120A
geo_loc_name: missing
collection_date: missing
Original files (1)
HEK293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR27033865 20524363 4104872600 1269.71 ZNF706-2_S42_R1_001.fastq.gz, ZNF706-2_S42_R2_001.fastq.gz, SRR270338… SRA
SRX22725710 SRP475585 OTHER PAIRED
GSM7932049: ZNF800 replicate 1 Cut&Run; Homo sapiens; OTHER
Sample: SRS19714758
BioProject: PRJNA1048315
BioSample: SAMN38610855
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Sample attributes
source_name: HEK293T
cell line: HEK293T
cell type: Human embryonic kidney
genotype: ZNF800
treatment: Bethyl A190-120A
geo_loc_name: missing
collection_date: missing
Original files (1)
HEK293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR27033864 23637923 4727584600 1466.71 ZNF800-1_S43_R1_001.fastq.gz, ZNF800-1_S43_R2_001.fastq.gz, SRR270338… SRA
SRX22725711 SRP475585 OTHER PAIRED
GSM7932050: ZNF800 replicate 2 Cut&Run; Homo sapiens; OTHER
Sample: SRS19714759
BioProject: PRJNA1048315
BioSample: SAMN38610854
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Sample attributes
source_name: HEK293T
cell line: HEK293T
cell type: Human embryonic kidney
genotype: ZNF800
treatment: Bethyl A190-120A
geo_loc_name: missing
collection_date: missing
Original files (1)
HEK293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR27033863 21489431 4297886200 1336.33 ZNF800-2_S44_R1_001.fastq.gz, ZNF800-2_S44_R2_001.fastq.gz, SRR270338… SRA
SRX22725712 SRP475585 OTHER PAIRED
GSM7932012: TEX13A replicate 2 Cut&Run; Homo sapiens; OTHER
Sample: SRS19714760
BioProject: PRJNA1048315
BioSample: SAMN38610892
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Sample attributes
source_name: HEK293T
cell line: HEK293T
cell type: Human embryonic kidney
genotype: TEX13A
treatment: Bethyl A190-120A
geo_loc_name: missing
collection_date: missing
Original files (1)
HEK293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR27033862 5438573 554734446 176.63 TEX13A_2_S118_L002_R1_001.fastq.gz, TEX13A_2_S118_L002_R2_001.fastq.g… SRA
SRX22725713 SRP475585 OTHER PAIRED
GSM7932013: TRIM55 replicate 1 Cut&Run; Homo sapiens; OTHER
Sample: SRS19714761
BioProject: PRJNA1048315
BioSample: SAMN38610891
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Sample attributes
source_name: HEK293T
cell line: HEK293T
cell type: Human embryonic kidney
genotype: TRIM55
treatment: Bethyl A190-120A
geo_loc_name: missing
collection_date: missing
Original files (1)
HEK293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR27033861 3621057 369347814 119.0 TRIM55_1_S127_L002_R1_001.fastq.gz, TRIM55_1_S127_L002_R2_001.fastq.g… SRA
SRX22725714 SRP475585 OTHER PAIRED
GSM7932014: TRIM55 replicate 2 Cut&Run; Homo sapiens; OTHER
Sample: SRS19714762
BioProject: PRJNA1048315
BioSample: SAMN38610890
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Sample attributes
source_name: HEK293T
cell line: HEK293T
cell type: Human embryonic kidney
genotype: TRIM55
treatment: Bethyl A190-120A
geo_loc_name: missing
collection_date: missing
Original files (1)
HEK293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR27033860 25328 2583456 0.96 TRIM55_2_S128_L002_R1_001.fastq.gz, TRIM55_2_S128_L002_R2_001.fastq.g… SRA
SRX22725715 SRP475585 OTHER PAIRED
GSM7932015: U2AF1 replicate 1 Cut&Run; Homo sapiens; OTHER
Sample: SRS19714763
BioProject: PRJNA1048315
BioSample: SAMN38610889
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Sample attributes
source_name: HEK293T
cell line: HEK293T
cell type: Human embryonic kidney
genotype: U2AF1
treatment: Bethyl A190-120A
geo_loc_name: missing
collection_date: missing
Original files (1)
HEK293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR27033859 6950381 708938862 229.79 U2AF1_1_S95_L002_R1_001.fastq.gz, U2AF1_1_S95_L002_R2_001.fastq.gz, S… SRA
SRX22725716 SRP475585 OTHER PAIRED
GSM7932016: U2AF1 replicate 2 Cut&Run; Homo sapiens; OTHER
Sample: SRS19714764
BioProject: PRJNA1048315
BioSample: SAMN38610888
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Sample attributes
source_name: HEK293T
cell line: HEK293T
cell type: Human embryonic kidney
genotype: U2AF1
treatment: Bethyl A190-120A
geo_loc_name: missing
collection_date: missing
Original files (1)
HEK293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR27033858 6914739 705303378 229.69 U2AF1_2_S96_L002_R1_001.fastq.gz, U2AF1_2_S96_L002_R2_001.fastq.gz, S… SRA
SRX22725717 SRP475585 OTHER PAIRED
GSM7932017: V5 Mock IP 1 Cut&Run; Homo sapiens; OTHER
Sample: SRS19714765
BioProject: PRJNA1048315
BioSample: SAMN38610887
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Sample attributes
source_name: HEK293T
cell line: HEK293T
cell type: Human embryonic kidney
genotype: V5 Mock IP 1 Cut&Run
treatment: Bethyl A190-120A
geo_loc_name: missing
collection_date: missing
Original files (1)
HEK293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR27033857 11141582 3364757764 1073.66 UT_S25_L001_R1_001.fastq.gz, UT_S25_L001_R2_001.fastq.gz, SRR27033857… SRA
SRX22725718 SRP475585 OTHER PAIRED
GSM7932018: V5 Mock IP 2 Cut&Run; Homo sapiens; OTHER
Sample: SRS19714767
BioProject: PRJNA1048315
BioSample: SAMN38610886
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Sample attributes
source_name: HEK293T
cell line: HEK293T
cell type: Human embryonic kidney
genotype: V5 Mock IP 2 Cut&Run
treatment: Bethyl A190-120A
geo_loc_name: missing
collection_date: missing
Original files (1)
HEK293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR27033856 17968126 3593625200 1110.77 UT-2_S57_R1_001.fastq.gz, UT-2_S57_R2_001.fastq.gz, SRR27033856, SRR2… SRA
SRX22725719 SRP475585 OTHER PAIRED
GSM7932019: WBP4 replicate 1 Cut&Run; Homo sapiens; OTHER
Sample: SRS19714766
BioProject: PRJNA1048315
BioSample: SAMN38610885
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Sample attributes
source_name: HEK293T
cell line: HEK293T
cell type: Human embryonic kidney
genotype: WBP4
treatment: Bethyl A190-120A
geo_loc_name: missing
collection_date: missing
Original files (1)
HEK293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR27033855 5734556 584924712 192.31 WBP4_1_S103_L002_R1_001.fastq.gz, WBP4_1_S103_L002_R2_001.fastq.gz, S… SRA
SRX22725720 SRP475585 OTHER PAIRED
GSM7932020: WBP4 replicate 2 Cut&Run; Homo sapiens; OTHER
Sample: SRS19714768
BioProject: PRJNA1048315
BioSample: SAMN38610884
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Sample attributes
source_name: HEK293T
cell line: HEK293T
cell type: Human embryonic kidney
genotype: WBP4
treatment: Bethyl A190-120A
geo_loc_name: missing
collection_date: missing
Original files (1)
HEK293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR27033854 6268464 639383328 204.88 WBP4_2_S104_L002_R1_001.fastq.gz, WBP4_2_S104_L002_R2_001.fastq.gz, S… SRA
SRX22725721 SRP475585 OTHER PAIRED
GSM7932021: ZC3H3 replicate 1 Cut&Run; Homo sapiens; OTHER
Sample: SRS19714769
BioProject: PRJNA1048315
BioSample: SAMN38610883
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Sample attributes
source_name: HEK293T
cell line: HEK293T
cell type: Human embryonic kidney
genotype: ZC3H3
treatment: Bethyl A190-120A
geo_loc_name: missing
collection_date: missing
Original files (1)
HEK293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR27033853 7008078 714823956 231.88 ZC3H3_1_S97_L002_R1_001.fastq.gz, ZC3H3_1_S97_L002_R2_001.fastq.gz, S… SRA
SRX22725722 SRP475585 OTHER PAIRED
GSM7932022: ZC3H3 replicate 2 Cut&Run; Homo sapiens; OTHER
Sample: SRS19714770
BioProject: PRJNA1048315
BioSample: SAMN38610882
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Sample attributes
source_name: HEK293T
cell line: HEK293T
cell type: Human embryonic kidney
genotype: ZC3H3
treatment: Bethyl A190-120A
geo_loc_name: missing
collection_date: missing
Original files (1)
HEK293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR27033852 29403 2999106 1.13 ZC3H3_2_S98_L002_R1_001.fastq.gz, ZC3H3_2_S98_L002_R2_001.fastq.gz, S… SRA
SRX22725723 SRP475585 OTHER PAIRED
GSM7932023: ZFP36L1 replicate 1 Cut&Run; Homo sapiens; OTHER
Sample: SRS19714771
BioProject: PRJNA1048315
BioSample: SAMN38610881
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Sample attributes
source_name: HEK293T
cell line: HEK293T
cell type: Human embryonic kidney
genotype: ZFP36L1
treatment: Bethyl A190-120A
geo_loc_name: missing
collection_date: missing
Original files (1)
HEK293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR27033851 9468709 965808318 310.14 ZFP36L1_1_S11_L001_R1_001.fastq.gz, ZFP36L1_1_S11_L001_R2_001.fastq.g… SRA
SRX22725724 SRP475585 OTHER PAIRED
GSM7932024: ZFP36L1 replicate 2 Cut&Run; Homo sapiens; OTHER
Sample: SRS19714772
BioProject: PRJNA1048315
BioSample: SAMN38610880
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Sample attributes
source_name: HEK293T
cell line: HEK293T
cell type: Human embryonic kidney
genotype: ZFP36L1
treatment: Bethyl A190-120A
geo_loc_name: missing
collection_date: missing
Original files (1)
HEK293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR27033850 12075842 1231735884 381.5 ZFP36L1_2_S12_L001_R1_001.fastq.gz, ZFP36L1_2_S12_L001_R2_001.fastq.g… SRA
SRX22725725 SRP475585 OTHER PAIRED
GSM7932025: ZMAT3 replicate 1 Cut&Run; Homo sapiens; OTHER
Sample: SRS19714773
BioProject: PRJNA1048315
BioSample: SAMN38610879
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Sample attributes
source_name: HEK293T
cell line: HEK293T
cell type: Human embryonic kidney
genotype: ZMAT3
treatment: Bethyl A190-120A
geo_loc_name: missing
collection_date: missing
Original files (1)
HEK293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR27033849 5197658 530161116 174.69 ZMAT3_1_S105_L002_R1_001.fastq.gz, ZMAT3_1_S105_L002_R2_001.fastq.gz,… SRA
SRX22725726 SRP475585 OTHER PAIRED
GSM7932026: ZMAT3 replicate 2 Cut&Run; Homo sapiens; OTHER
Sample: SRS19714774
BioProject: PRJNA1048315
BioSample: SAMN38610878
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Sample attributes
source_name: HEK293T
cell line: HEK293T
cell type: Human embryonic kidney
genotype: ZMAT3
treatment: Bethyl A190-120A
geo_loc_name: missing
collection_date: missing
Original files (1)
HEK293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR27033848 4370915 445833330 144.75 ZMAT3_2_S106_L002_R1_001.fastq.gz, ZMAT3_2_S106_L002_R2_001.fastq.gz,… SRA
SRX22725727 SRP475585 OTHER PAIRED
GSM7932027: ZMAT5 replicate 1 Cut&Run; Homo sapiens; OTHER
Sample: SRS19714775
BioProject: PRJNA1048315
BioSample: SAMN38610877
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Sample attributes
source_name: HEK293T
cell line: HEK293T
cell type: Human embryonic kidney
genotype: ZMAT5
treatment: Bethyl A190-120A
geo_loc_name: missing
collection_date: missing
Original files (1)
HEK293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR27033847 3737508 381225816 124.17 ZMAT5_1_S123_L002_R1_001.fastq.gz, ZMAT5_1_S123_L002_R2_001.fastq.gz,… SRA
SRX22725728 SRP475585 OTHER PAIRED
GSM7932028: ZMAT5 replicate 2 Cut&Run; Homo sapiens; OTHER
Sample: SRS19714776
BioProject: PRJNA1048315
BioSample: SAMN38610876
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Sample attributes
source_name: HEK293T
cell line: HEK293T
cell type: Human embryonic kidney
genotype: ZMAT5
treatment: Bethyl A190-120A
geo_loc_name: missing
collection_date: missing
Original files (1)
HEK293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR27033846 8048 820896 0.38 ZMAT5_2_S124_L002_R1_001.fastq.gz, ZMAT5_2_S124_L002_R2_001.fastq.gz,… SRA
SRX22725729 SRP475585 OTHER PAIRED
GSM7932029: ZNF22 replicate 1 Cut&Run; Homo sapiens; OTHER
Sample: SRS19714777
BioProject: PRJNA1048315
BioSample: SAMN38610875
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Sample attributes
source_name: HEK293T
cell line: HEK293T
cell type: Human embryonic kidney
genotype: ZNF22
treatment: Bethyl A190-120A
geo_loc_name: missing
collection_date: missing
Original files (1)
HEK293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR27033845 5635396 574810392 190.2 ZNF22_1_S87_L002_R1_001.fastq.gz, ZNF22_1_S87_L002_R2_001.fastq.gz, S… SRA
SRX22725730 SRP475585 OTHER PAIRED
GSM7932030: ZNF22 replicate 2 Cut&Run; Homo sapiens; OTHER
Sample: SRS19714778
BioProject: PRJNA1048315
BioSample: SAMN38610874
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Sample attributes
source_name: HEK293T
cell line: HEK293T
cell type: Human embryonic kidney
genotype: ZNF22
treatment: Bethyl A190-120A
geo_loc_name: missing
collection_date: missing
Original files (1)
HEK293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR27033844 7636809 778954518 257.75 ZNF22_2_S88_L002_R1_001.fastq.gz, ZNF22_2_S88_L002_R2_001.fastq.gz, S… SRA
SRX22725731 SRP475585 OTHER PAIRED
GSM7932031: ZNF277 replicate 1 Cut&Run; Homo sapiens; OTHER
Sample: SRS19714780
BioProject: PRJNA1048315
BioSample: SAMN38610873
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Sample attributes
source_name: HEK293T
cell line: HEK293T
cell type: Human embryonic kidney
genotype: ZNF277
treatment: Bethyl A190-120A
geo_loc_name: missing
collection_date: missing
Original files (1)
HEK293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR27033843 5031608 513224016 162.33 ZNF277_1_S19_L001_R1_001.fastq.gz, ZNF277_1_S19_L001_R2_001.fastq.gz,… SRA
SRX22725732 SRP475585 OTHER PAIRED
GSM7932032: ZNF277 replicate 2 Cut&Run; Homo sapiens; OTHER
Sample: SRS19714779
BioProject: PRJNA1048315
BioSample: SAMN38610872
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Sample attributes
source_name: HEK293T
cell line: HEK293T
cell type: Human embryonic kidney
genotype: ZNF277
treatment: Bethyl A190-120A
geo_loc_name: missing
collection_date: missing
Original files (1)
HEK293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR27033842 4705267 479937234 152.55 ZNF277_2_S20_L001_R1_001.fastq.gz, ZNF277_2_S20_L001_R2_001.fastq.gz,… SRA
SRX22725733 SRP475585 OTHER PAIRED
GSM7932033: ZNF2 replicate 1 Cut&Run; Homo sapiens; OTHER
Sample: SRS19714781
BioProject: PRJNA1048315
BioSample: SAMN38610871
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Sample attributes
source_name: HEK293T
cell line: HEK293T
cell type: Human embryonic kidney
genotype: ZNF2
treatment: Bethyl A190-120A
geo_loc_name: missing
collection_date: missing
Original files (1)
HEK293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR27033841 5196660 530059320 172.05 ZNF2_1_S113_L002_R1_001.fastq.gz, ZNF2_1_S113_L002_R2_001.fastq.gz, S… SRA
SRX22725734 SRP475585 OTHER PAIRED
GSM7932034: ZNF2 replicate 2 Cut&Run; Homo sapiens; OTHER
Sample: SRS19714782
BioProject: PRJNA1048315
BioSample: SAMN38610870
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Sample attributes
source_name: HEK293T
cell line: HEK293T
cell type: Human embryonic kidney
genotype: ZNF2
treatment: Bethyl A190-120A
geo_loc_name: missing
collection_date: missing
Original files (1)
HEK293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR27033840 2856237 291336174 94.26 ZNF2_2_S114_L002_R1_001.fastq.gz, ZNF2_2_S114_L002_R2_001.fastq.gz, S… SRA
SRX22725735 SRP475585 OTHER PAIRED
GSM7932035: ZNF317 replicate 1 Cut&Run; Homo sapiens; OTHER
Sample: SRS19714783
BioProject: PRJNA1048315
BioSample: SAMN38610869
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Sample attributes
source_name: HEK293T
cell line: HEK293T
cell type: Human embryonic kidney
genotype: ZNF317
treatment: Bethyl A190-120A
geo_loc_name: missing
collection_date: missing
Original files (1)
HEK293T
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR27033839 4862274 495951948 158.5 ZNF317_1_S17_L001_R1_001.fastq.gz, ZNF317_1_S17_L001_R2_001.fastq.gz,… SRA

Linked Publications (1)

Integrated multi-omics analysis of zinc-finger proteins uncovers roles in RNA regulation.
Molecular cell · 2024

Data Files (180)

Accession File Name Stored Type Output Type Mapping Assembly Size Download
— APEX2_1_S101_L002_R1_001.fastq.gz OTHER 208.9 MB link
— APEX2_2_S102_L002_R1_001.fastq.gz OTHER 152.6 MB link
— BRCA1_1_S109_L002_R1_001.fastq.gz OTHER 206.4 MB link
— BRCA1_2_S110_L002_R1_001.fastq.gz OTHER 1.2 GB link
— CISD1_1_S15_L001_R1_001.fastq.gz OTHER 252.8 MB link
— CISD1_2_S16_L001_R1_001.fastq.gz OTHER 273.8 MB link
— CISD2_1_S119_L002_R1_001.fastq.gz OTHER 121.5 MB link
— CISD2_2_S120_L002_R1_001.fastq.gz OTHER 131.3 MB link
— CNBP_1_S13_L001_R1_001.fastq.gz OTHER 539.8 MB link
— CNBP_2_S14_L001_R1_001.fastq.gz OTHER 444.7 MB link
— CNOT4_1_S115_L002_R1_001.fastq.gz OTHER 98.3 MB link
— CNOT4_2_S116_L002_R1_001.fastq.gz OTHER 115.2 MB link
— CPSF4_1_S93_L002_R1_001.fastq.gz OTHER 211.5 MB link
— CPSF4_2_S94_L002_R1_001.fastq.gz OTHER 162.9 MB link
— CPSF4L_1_S56_R1_001.fastq.gz OTHER 530.3 MB link
— CPSF4L_2_S57_R1_001.fastq.gz OTHER 408.8 MB link
— CTCF_1_S28_L001_R1_001.fastq.gz OTHER 1.1 GB link
— CTCF_2_S29_L001_R1_001.fastq.gz OTHER 783.9 MB link
— ERI2_1_S99_L002_R1_001.fastq.gz OTHER 129.9 MB link
— ERI2_2_S100_L002_R1_001.fastq.gz OTHER 217.1 MB link
— FUS_1_S107_L002_R1_001.fastq.gz OTHER 1.8 GB link
— FUS_2_S108_L002_R1_001.fastq.gz OTHER 156.5 MB link
— G2E3_1_S79_L002_R1_001.fastq.gz OTHER 120.1 MB link
— G2E3_2_S80_L002_R1_001.fastq.gz OTHER 205.5 MB link
— GIN1_1_S81_L002_R1_001.fastq.gz OTHER 316.1 MB link
— GIN1_2_S82_L002_R1_001.fastq.gz OTHER 290.9 MB link
— GTF3C4-1_S49_R1_001.fastq.gz OTHER 2.9 GB link
— GTF3C4-2_S50_R1_001.fastq.gz OTHER 2.5 GB link
— IGHMBP2_1_S125_L002_R1_001.fastq.gz OTHER 333.3 MB link
— IGHMBP2_2_S126_L002_R1_001.fastq.gz OTHER 181.2 MB link
— LIN28B_1_S7_L001_R1_001.fastq.gz OTHER 1.1 GB link
— LIN28B_2_S8_L001_R1_001.fastq.gz OTHER 1.6 GB link
— MAZ_1_R1_001.fastq.gz OTHER 535.0 MB link
— MAZ_2_R1_001.fastq.gz OTHER 1.4 GB link
— MBNL1_1_S89_L002_R1_001.fastq.gz OTHER 2.0 MB link
— MBNL1_2_S90_L002_R1_001.fastq.gz OTHER 155.3 MB link
— NANOS2_1_S111_L002_R1_001.fastq.gz OTHER 129.7 MB link
— NANOS2_2_S112_L002_R1_001.fastq.gz OTHER 182.9 MB link
— PHF7_1_S91_L002_R1_001.fastq.gz OTHER 238.4 MB link
— PHF7_2_S92_L002_R1_001.fastq.gz OTHER 202.0 MB link
— RBM5_1_S54_R1_001.fastq.gz OTHER 516.6 MB link
— RBM5_2_S55_R1_001.fastq.gz OTHER 865.6 MB link
— RNF113A_1_S58_R1_001.fastq.gz OTHER 950.6 MB link
— RNF113A_2_S69_R1_001.fastq.gz OTHER 1.1 GB link
— RNF14-1_S45_R1_001.fastq.gz OTHER 1.7 GB link
— RNF14-2_S46_R1_001.fastq.gz OTHER 1.4 GB link
— SALL4_1_S9_L001_R1_001.fastq.gz OTHER 1.7 GB link
— SALL4_2_S10_L001_R1_001.fastq.gz OTHER 168.8 MB link
— SNRPC_1_S85_L002_R1_001.fastq.gz OTHER 155.1 MB link
— SNRPC_2_S86_L002_R1_001.fastq.gz OTHER 202.5 MB link
— SRR27033839_GSM7932035 OTHER 158.0 MB link
— SRR27033840_GSM7932034 OTHER 94.0 MB link
— SRR27033841_GSM7932033 OTHER 172.0 MB link
— SRR27033842_GSM7932032 OTHER 152.0 MB link
— SRR27033843_GSM7932031 OTHER 162.0 MB link
— SRR27033844_GSM7932030 OTHER 257.0 MB link
— SRR27033845_GSM7932029 OTHER 190.0 MB link
— SRR27033846_GSM7932028 OTHER link
— SRR27033847_GSM7932027 OTHER 124.0 MB link
— SRR27033848_GSM7932026 OTHER 144.0 MB link
— SRR27033849_GSM7932025 OTHER 174.0 MB link
— SRR27033850_GSM7932024 OTHER 381.0 MB link
— SRR27033851_GSM7932023 OTHER 310.0 MB link
— SRR27033852_GSM7932022 OTHER 1.0 MB link
— SRR27033853_GSM7932021 OTHER 231.0 MB link
— SRR27033854_GSM7932020 OTHER 204.0 MB link
— SRR27033855_GSM7932019 OTHER 192.0 MB link
— SRR27033856_GSM7932018 OTHER 1.1 GB link
— SRR27033857_GSM7932017 OTHER 1.0 GB link
— SRR27033858_GSM7932016 OTHER 229.0 MB link
— SRR27033859_GSM7932015 OTHER 229.0 MB link
— SRR27033860_GSM7932014 OTHER link
— SRR27033861_GSM7932013 OTHER 119.0 MB link
— SRR27033862_GSM7932012 OTHER 176.0 MB link
— SRR27033863_GSM7932050 OTHER 1.3 GB link
— SRR27033864_GSM7932049 OTHER 1.4 GB link
— SRR27033865_GSM7932048 OTHER 1.2 GB link
— SRR27033866_GSM7932047 OTHER 996.0 MB link
— SRR27033867_GSM7932046 OTHER 952.0 MB link
— SRR27033868_GSM7932045 OTHER 931.0 MB link
— SRR27033869_GSM7932044 OTHER 2.2 GB link
— SRR27033870_GSM7932043 OTHER 3.1 GB link
— SRR27033871_GSM7932042 OTHER 216.0 MB link
— SRR27033872_GSM7932041 OTHER 155.0 MB link
— SRR27033873_GSM7932040 OTHER 1.6 GB link
— SRR27033874_GSM7932039 OTHER 1.8 GB link
— SRR27033875_GSM7932038 OTHER 1.5 GB link
— SRR27033876_GSM7932037 OTHER 1.7 GB link
— SRR27033877_GSM7932036 OTHER 143.0 MB link
— SRR27033878_GSM7932011 OTHER 150.0 MB link
— SRR27033879_GSM7932010 OTHER 202.0 MB link
— SRR27033880_GSM7932009 OTHER 155.0 MB link
— SRR27033881_GSM7932008 OTHER 168.0 MB link
— SRR27033882_GSM7932007 OTHER 1.7 GB link
— SRR27033883_GSM7932006 OTHER 1.4 GB link
— SRR27033884_GSM7932005 OTHER 1.7 GB link
— SRR27033885_GSM7932004 OTHER 1.1 GB link
— SRR27033886_GSM7932003 OTHER 950.0 MB link
— SRR27033887_GSM7932002 OTHER 865.0 MB link
— SRR27033888_GSM7932001 OTHER 516.0 MB link
— SRR27033889_GSM7932000 OTHER 201.0 MB link
— SRR27033890_GSM7931999 OTHER 238.0 MB link
— SRR27033891_GSM7931998 OTHER 182.0 MB link
— SRR27033892_GSM7931997 OTHER 129.0 MB link
— SRR27033893_GSM7931996 OTHER 155.0 MB link
— SRR27033894_GSM7931995 OTHER 1.0 MB link
— SRR27033895_GSM7931994 OTHER 1.4 GB link
— SRR27033896_GSM7931993 OTHER 534.0 MB link
— SRR27033897_GSM7931992 OTHER 1.6 GB link
— SRR27033898_GSM7931991 OTHER 1.1 GB link
— SRR27033899_GSM7931990 OTHER 181.0 MB link
— SRR27033900_GSM7931989 OTHER 333.0 MB link
— SRR27033901_GSM7931988 OTHER 2.5 GB link
— SRR27033902_GSM7931987 OTHER 2.9 GB link
— SRR27033903_GSM7931986 OTHER 290.0 MB link
— SRR27033904_GSM7931985 OTHER 316.0 MB link
— SRR27033905_GSM7931984 OTHER 205.0 MB link
— SRR27033906_GSM7931983 OTHER 120.0 MB link
— SRR27033907_GSM7931982 OTHER 156.0 MB link
— SRR27033908_GSM7931981 OTHER 1.8 GB link
— SRR27033909_GSM7931980 OTHER 217.0 MB link
— SRR27033910_GSM7931979 OTHER 129.0 MB link
— SRR27033911_GSM7931978 OTHER 783.0 MB link
— SRR27033912_GSM7931977 OTHER 1.1 GB link
— SRR27033913_GSM7931976 OTHER 162.0 MB link
— SRR27033914_GSM7931975 OTHER 211.0 MB link
— SRR27033915_GSM7931974 OTHER 408.0 MB link
— SRR27033916_GSM7931973 OTHER 530.0 MB link
— SRR27033917_GSM7931972 OTHER 115.0 MB link
— SRR27033918_GSM7931971 OTHER 98.0 MB link
— SRR27033919_GSM7931970 OTHER 444.0 MB link
— SRR27033920_GSM7931969 OTHER 539.0 MB link
— SRR27033921_GSM7931968 OTHER 131.0 MB link
— SRR27033922_GSM7931967 OTHER 121.0 MB link
— SRR27033923_GSM7931966 OTHER 273.0 MB link
— SRR27033924_GSM7931965 OTHER 252.0 MB link
— SRR27033925_GSM7931964 OTHER 1.2 GB link
— SRR27033926_GSM7931963 OTHER 206.0 MB link
— SRR27033927_GSM7931962 OTHER 152.0 MB link
— SRR27033928_GSM7931961 OTHER 208.0 MB link
— TEX13A_1_S117_L002_R1_001.fastq.gz OTHER 150.4 MB link
— TEX13A_2_S118_L002_R1_001.fastq.gz OTHER 176.6 MB link
— TRIM55_1_S127_L002_R1_001.fastq.gz OTHER 119.0 MB link
— TRIM55_2_S128_L002_R1_001.fastq.gz OTHER 983.0 KB link
— U2AF1_1_S95_L002_R1_001.fastq.gz OTHER 229.8 MB link
— U2AF1_2_S96_L002_R1_001.fastq.gz OTHER 229.7 MB link
— UT-2_S57_R1_001.fastq.gz OTHER 1.1 GB link
— UT_S25_L001_R1_001.fastq.gz OTHER 1.0 GB link
— WBP4_1_S103_L002_R1_001.fastq.gz OTHER 192.3 MB link
— WBP4_2_S104_L002_R1_001.fastq.gz OTHER 204.9 MB link
— ZC3H3_1_S97_L002_R1_001.fastq.gz OTHER 231.9 MB link
— ZC3H3_2_S98_L002_R1_001.fastq.gz OTHER 1.1 MB link
— ZFP36L1_1_S11_L001_R1_001.fastq.gz OTHER 310.1 MB link
— ZFP36L1_2_S12_L001_R1_001.fastq.gz OTHER 381.5 MB link
— ZMAT3_1_S105_L002_R1_001.fastq.gz OTHER 174.7 MB link
— ZMAT3_2_S106_L002_R1_001.fastq.gz OTHER 144.8 MB link
— ZMAT5_1_S123_L002_R1_001.fastq.gz OTHER 124.2 MB link
— ZMAT5_2_S124_L002_R1_001.fastq.gz OTHER 389.1 KB link
— ZNF2_1_S113_L002_R1_001.fastq.gz OTHER 172.0 MB link
— ZNF22_1_S87_L002_R1_001.fastq.gz OTHER 190.2 MB link
— ZNF22_2_S88_L002_R1_001.fastq.gz OTHER 257.8 MB link
— ZNF2_2_S114_L002_R1_001.fastq.gz OTHER 94.3 MB link
— ZNF277_1_S19_L001_R1_001.fastq.gz OTHER 162.3 MB link
— ZNF277_2_S20_L001_R1_001.fastq.gz OTHER 152.5 MB link
— ZNF317_1_S17_L001_R1_001.fastq.gz OTHER 158.5 MB link
— ZNF317_2_S18_L001_R1_001.fastq.gz OTHER 143.4 MB link
— ZNF473_1_S83_L002_R1_001.fastq.gz OTHER 155.2 MB link
— ZNF473_2_S84_L002_R1_001.fastq.gz OTHER 216.1 MB link
— ZNF473-DEL-1_S60_R1_001.fastq.gz OTHER 1.7 GB link
— ZNF473-DEL-2_S61_R1_001.fastq.gz OTHER 1.5 GB link
— ZNF473-WT-1_S58_R1_001.fastq.gz OTHER 1.8 GB link
— ZNF473-WT-2_S59_R1_001.fastq.gz OTHER 1.6 GB link
— ZNF574-1_S47_R1_001.fastq.gz OTHER 3.1 GB link
— ZNF574-2_S48_R1_001.fastq.gz OTHER 2.2 GB link
— ZNF593_1_R1_001.fastq.gz OTHER 931.5 MB link
— ZNF593_2_R1_001.fastq.gz OTHER 952.8 MB link
— ZNF706-1_S41_R1_001.fastq.gz OTHER 996.1 MB link
— ZNF706-2_S42_R1_001.fastq.gz OTHER 1.2 GB link
— ZNF800-1_S43_R1_001.fastq.gz OTHER 1.4 GB link
— ZNF800-2_S44_R1_001.fastq.gz OTHER 1.3 GB link