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GSE120104

GSE GEO
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Pervasive Chromatin-RNA Binding Protein Interactions Enable RNA-based Regulation of Transcription [ChIP-Seq]

Organism: Homo sapiens
Platform: GPL11154
Samples: 110
Experiment Types:
Genome binding/occupancy profiling by high throughput sequencing
Submitted: Sep 18 2018
Last Updated: Sep 26 2019
Status: Public on Jun 27 2019
Contact: Rui,,Xiao (Wuhan University)

Relations

SubSeries of: GSE120110 BioProject: https://www.ncbi.nlm.nih.gov/bioproject/PRJNA491668 SRA: https://www.ncbi.nlm.nih.gov/sra?term=SRP162019

Summary

Increasing evidence suggests that transcriptional control and chromatin activities at large involve regulatory RNAs, which likely enlist specific RNA binding proteins (RBPs). Although multiple RBPs have been implicated in transcriptional control, it has remained unclear how extensively RBPs directly act on chromatin. We embarked on a large-scale RBP ChIP-seq analysis, revealing widespread RBP presence in active chromatin regions in the human genome. Like transcription factors (TFs), RBPs also showed strong preference for hotspots in the genome, particularly gene promoters, where their association is frequently linked to transcriptional output. Unsupervised clustering reveals extensive co-association between TFs and RBPs, as exemplified by YY1, a known RNA-dependent TF, and RBM25, an RBP involved in splicing regulation. Remarkably, RBM25 depletion attenuates all YY1-dependent activities, including chromatin binding, DNA looping and transcription. We propose that various RBPs may enhance network interaction through harnessing regulatory RNAs to control transcription.

Overall Design

Examination of RBP ChIP-seq with 2 replicated experiments in HepG2 and K562 cells

Analysis (5 steps)

View Data Processing
Processing steps for GSE120104
  1. ChIP-seq data were processed in accordance with ENCODE uniform transcription factor ChIP-seq pipeline (https://www.encodeproject.org/chip-seq/transcription_factor/).
  2. Briefly, ChIP-seq reads were aligned to the GRCh37 human genome using BWA
  3. PCR duplicates and reads of low quality were filtered
  4. Peak-calling was performed with SPP and IDR with 0.02 IDR threshhold
  5. Signal tracks were generated with MACS2 and bigWig applications from UCSC genome browser (http://hgdownload.soe.ucsc.edu/admin/exe/linux.x86_64/)

Supplementary Files (3)

GSE120104_RAW.tar Download
GSE120104_RBM25chip-NC-OPTIMAL_ppr.IDR0.02.filt.narrowPeak.gz Download
GSE120104_YY1chip-NC-OPTIMAL_ppr.IDR0.02.filt.narrowPeak.gz Download
GEO Samples (110)
GSM3393527 GSM3393528 GSM3393529 GSM3393530 GSM3393531 GSM3393532 GSM3393533 GSM3393534 GSM3393535 GSM3393536 GSM3393537 GSM3393538 GSM3393539 GSM3393540 GSM3393541 GSM3393542 GSM3393543 GSM3393544 GSM3393545 GSM3393546 GSM3393547 GSM3393548 GSM3393549 GSM3393550 GSM3393551 GSM3393552 GSM3393553 GSM3393554 GSM3393555 GSM3393556 GSM3393557 GSM3393558 GSM3393559 GSM3393560 GSM3393561 GSM3393562 GSM3393563 GSM3393564 GSM3393565 GSM3393566 GSM3393567 GSM3393568 GSM3393569 GSM3393570 GSM3393571 GSM3393572 GSM3393573 GSM3393574 GSM3393575 GSM3393576 GSM3393577 GSM3393578 GSM3393579 GSM3393580 GSM3393581 GSM3393582 GSM3393583 GSM3393584 GSM3393585 GSM3393586 GSM3393587 GSM3393588 GSM3393589 GSM3393590 GSM3393591 GSM3393592 GSM3393593 GSM3393594 GSM3393595 GSM3393596 GSM3393597 GSM3393598 GSM3393599 GSM3393600 GSM3393601 GSM3393602 GSM3393603 GSM3393604 GSM3393605 GSM3393606 GSM3393607 GSM3393608 GSM3393609 GSM3393610 GSM3393611 GSM3393612 GSM3393613 GSM3393614 GSM3393615 GSM3393616 GSM3393617 GSM3393618 GSM3393619 GSM3393620 GSM3393621 GSM3393622 GSM3393623 GSM3393624 GSM3393625 GSM3393626 GSM3393627 GSM3393628 GSM3393629 GSM3393630 GSM3393631 GSM3393632 GSM3393633 GSM3393634 GSM3393635 GSM3393636

Dataset Citations (1)

Pervasive Chromatin-RNA Binding Protein Interactions Enable RNA-Based Regulation of Transcription.
PMID 31251911 · 2019 · Cell
Rui Xiao, Jia-Yu Chen, Zhengyu Liang, Daji Luo, Geng Chen, Zhi John Lu, Yang Chen, Bing Zhou, Hairi Li, Xian Du, Yang Yang, Mingkui San, Xintao Wei, Wen Liu, Eric Lécuyer, Brenton R Graveley, Gene W Yeo, Christopher B Burge, Michael Q Zhang, Yu Zhou, Xiang-Dong Fu

SRA Experiments (110) and Runs (204)

Total: 148101 MB
SRX4708013 SRP162019 ChIP-Seq SINGLE
GSM3393527: SRSF1_ChIP-seq_HepG2; Homo sapiens; ChIP-Seq
Sample: SRS3793717
BioProject: PRJNA491668
BioSample: SAMN10081892
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: HepG2
biomaterial_provider: ATCC (HB-8065)
cell line: HepG2
cell type: Hepatocellular carcinoma
chip antibody: SRSF1 (Bethyl Cat#A302-052A)
Original files (1)
HepG2
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR7868840 31467622 1258704880 457.43 SRSF1_ChIP_rep1_HepG2_batch17.fastq.gz, SRR7868840, SRR7868840.sralite SRA
SRR7868841 29190882 1167635280 466.04 SRSF1_ChIP_rep2_HepG2_batch17.fastq.gz, SRR7868841, SRR7868841.sralite SRA
SRX4708014 SRP162019 ChIP-Seq SINGLE
GSM3393528: SRSF3_ChIP-seq_HepG2; Homo sapiens; ChIP-Seq
Sample: SRS3793721
BioProject: PRJNA491668
BioSample: SAMN10081890
Platform: ILLUMINA
Instrument: Illumina HiSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: HepG2
biomaterial_provider: ATCC (HB-8065)
cell line: HepG2
cell type: Hepatocellular carcinoma
chip antibody: SRSF3 (MBL Cat# RN080PW)
Original files (1)
HepG2
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR7868842 22998446 896101116 605.17 SRSF3_ChIP_rep1_HepG2_batch3.fastq.gz, SRR7868842, SRR7868842.sralite SRA
SRR7868843 23927146 932768462 630.56 SRSF3_ChIP_rep2_HepG2_batch3.fastq.gz, SRR7868843, SRR7868843.sralite SRA
SRX4708015 SRP162019 ChIP-Seq SINGLE
GSM3393529: SRSF4_ChIP-seq_HepG2; Homo sapiens; ChIP-Seq
Sample: SRS3793720
BioProject: PRJNA491668
BioSample: SAMN10081888
Platform: ILLUMINA
Instrument: Illumina HiSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: HepG2
biomaterial_provider: ATCC (HB-8065)
cell line: HepG2
cell type: Hepatocellular carcinoma
chip antibody: SRSF4 (Bethyl Cat# A303-670A)
Original files (1)
HepG2
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR7868844 39920763 1596830520 868.67 SRSF4_ChIP_rep1_HepG2_batch5.fastq.gz, SRR7868844, SRR7868844.sralite SRA
SRR7868845 44675833 1787033320 1005.12 SRSF4_ChIP_rep2_HepG2_batch5.fastq.gz, SRR7868845, SRR7868845.sralite SRA
SRX4708016 SRP162019 ChIP-Seq SINGLE
GSM3393530: SRSF7_ChIP-seq_HepG2; Homo sapiens; ChIP-Seq
Sample: SRS3793719
BioProject: PRJNA491668
BioSample: SAMN10081887
Platform: ILLUMINA
Instrument: Illumina HiSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: HepG2
biomaterial_provider: ATCC (HB-8065)
cell line: HepG2
cell type: Hepatocellular carcinoma
chip antibody: SRSF7 (MBL Cat# RN079PW)
Original files (1)
HepG2
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR7868846 24758765 990350600 480.6 SRSF7_ChIP_rep1_HepG2_batch5.fastq.gz, SRR7868846, SRR7868846.sralite SRA
SRR7868847 27298476 1091939040 528.9 SRSF7_ChIP_rep2_HepG2_batch5.fastq.gz, SRR7868847, SRR7868847.sralite SRA
SRX4708017 SRP162019 ChIP-Seq SINGLE
GSM3393531: SRSF9_ChIP-seq_HepG2; Homo sapiens; ChIP-Seq
Sample: SRS3793718
BioProject: PRJNA491668
BioSample: SAMN10081885
Platform: ILLUMINA
Instrument: Illumina HiSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: HepG2
biomaterial_provider: ATCC (HB-8065)
cell line: HepG2
cell type: Hepatocellular carcinoma
chip antibody: SRSF9 (MBL Cat# RN081PW)
Original files (1)
HepG2
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR7868848 32811903 1312476120 842.94 SRSF9_ChIP_rep1_HepG2_batch5.fastq.gz, SRR7868848, SRR7868848.sralite SRA
SRR7868849 37903670 1516146800 974.65 SRSF9_ChIP_rep2_HepG2_batch5.fastq.gz, SRR7868849, SRR7868849.sralite SRA
SRX4708018 SRP162019 ChIP-Seq SINGLE
GSM3393532: U2AF1_ChIP-seq_HepG2; Homo sapiens; ChIP-Seq
Sample: SRS3793844
BioProject: PRJNA491668
BioSample: SAMN10081883
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: HepG2
biomaterial_provider: ATCC (HB-8065)
cell line: HepG2
cell type: Hepatocellular carcinoma
chip antibody: U2AF1 (Bethyl Cat# A302-079A)
Original files (1)
HepG2
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR7868850 32420501 1296820040 480.9 U2AF1_ChIP_rep1_HepG2_batch17.fastq.gz, SRR7868850, SRR7868850.sralite SRA
SRR7868851 25506290 1020251600 389.67 U2AF1_ChIP_rep2_HepG2_batch17.fastq.gz, SRR7868851, SRR7868851.sralite SRA
SRX4708019 SRP162019 ChIP-Seq SINGLE
GSM3393533: U2AF2_ChIP-seq_HepG2; Homo sapiens; ChIP-Seq
Sample: SRS3793722
BioProject: PRJNA491668
BioSample: SAMN10081881
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: HepG2
biomaterial_provider: ATCC (HB-8065)
cell line: HepG2
cell type: Hepatocellular carcinoma
chip antibody: U2AF2 (Bethyl Cat# A303-665A)
Original files (1)
HepG2
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR7868852 26485574 1059422960 406.76 U2AF2_ChIP_rep1_HepG2_batch17.fastq.gz, SRR7868852, SRR7868852.sralite SRA
SRR7868853 28187084 1127483360 447.86 U2AF2_ChIP_rep2_HepG2_batch17.fastq.gz, SRR7868853, SRR7868853.sralite SRA
SRX4708020 SRP162019 ChIP-Seq SINGLE
GSM3393534: HNRNPC_ChIP-seq_HepG2; Homo sapiens; ChIP-Seq
Sample: SRS3793728
BioProject: PRJNA491668
BioSample: SAMN10081876
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: HepG2
biomaterial_provider: ATCC (HB-8065)
cell line: HepG2
cell type: Hepatocellular carcinoma
chip antibody: HNRNPC (Santa Cruz Biotechnology Cat# sc-10037)
Original files (1)
HepG2
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR7868854 32464110 1298564400 473.89 HNRNPC_ChIP_rep1_HepG2_batch16.fastq.gz, SRR7868854, SRR7868854.srali… SRA
SRR7868855 33425846 1337033840 487.97 HNRNPC_ChIP_rep2_HepG2_batch16.fastq.gz, SRR7868855, SRR7868855.srali… SRA
SRX4708021 SRP162019 ChIP-Seq SINGLE
GSM3393535: HNRNPH1_ChIP-seq_HepG2; Homo sapiens; ChIP-Seq
Sample: SRS3793723
BioProject: PRJNA491668
BioSample: SAMN10081874
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: HepG2
biomaterial_provider: ATCC (HB-8065)
cell line: HepG2
cell type: Hepatocellular carcinoma
chip antibody: HNRNPH1 (Aviva Cat# ARP58479_P050)
Original files (1)
HepG2
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR7868856 38844507 1553780280 592.58 HNRNPH1_ChIP_rep1_HepG2_batch16.fastq.gz, SRR7868856, SRR7868856.sral… SRA
SRR7868857 35934184 1437367360 551.43 HNRNPH1_ChIP_rep2_HepG2_batch16.fastq.gz, SRR7868857, SRR7868857.sral… SRA
SRX4708022 SRP162019 ChIP-Seq SINGLE
GSM3393536: HNRNPK_ChIP-seq_HepG2; Homo sapiens; ChIP-Seq
Sample: SRS3793724
BioProject: PRJNA491668
BioSample: SAMN10081873
Platform: ILLUMINA
Instrument: Illumina HiSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: HepG2
biomaterial_provider: ATCC (HB-8065)
cell line: HepG2
cell type: Hepatocellular carcinoma
chip antibody: HNRNPK (MBL Cat# RN019P)
Original files (1)
HepG2
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR7868858 26326286 1053051440 492.7 HNRNPK_ChIP_rep1_HepG2_batch6.fastq.gz, SRR7868858, SRR7868858.sralite SRA
SRR7868859 38813678 1552547120 673.87 HNRNPK_ChIP_rep2_HepG2_batch6.fastq.gz, SRR7868859, SRR7868859.sralite SRA
SRX4708023 SRP162019 ChIP-Seq SINGLE
GSM3393537: HNRNPL_ChIP-seq_HepG2; Homo sapiens; ChIP-Seq
Sample: SRS3793727
BioProject: PRJNA491668
BioSample: SAMN10081871
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: HepG2
biomaterial_provider: ATCC (HB-8065)
cell line: HepG2
cell type: Hepatocellular carcinoma
chip antibody: HNRNPL (Aviva Cat# ARP40368_P050)
Original files (1)
HepG2
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR7868860 21272810 850912400 353.14 HNRNPL_ChIP_rep1_HepG2_batch17.fastq.gz, SRR7868860, SRR7868860.srali… SRA
SRR7868861 19511681 780467240 323.62 HNRNPL_ChIP_rep2_HepG2_batch17.fastq.gz, SRR7868861, SRR7868861.srali… SRA
SRX4708024 SRP162019 ChIP-Seq SINGLE
GSM3393538: HNRNPLL_ChIP-seq_HepG2; Homo sapiens; ChIP-Seq
Sample: SRS3793726
BioProject: PRJNA491668
BioSample: SAMN10081870
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: HepG2
biomaterial_provider: ATCC (HB-8065)
cell line: HepG2
cell type: Hepatocellular carcinoma
chip antibody: HNRNPLL (Cell Signaling Technology Cat# 4783S)
Original files (1)
HepG2
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR7868862 47261239 1890449560 731.45 HNRNPLL_ChIP_rep1_HepG2_batch16.fastq.gz, SRR7868862, SRR7868862.sral… SRA
SRR7868863 69809802 2792392080 1059.03 HNRNPLL_ChIP_rep2_HepG2_batch16.fastq.gz, SRR7868863, SRR7868863.sral… SRA
SRX4708025 SRP162019 ChIP-Seq SINGLE
GSM3393539: HNRNPUL1_ChIP-seq_HepG2; Homo sapiens; ChIP-Seq
Sample: SRS3793725
BioProject: PRJNA491668
BioSample: SAMN10081868
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: HepG2
biomaterial_provider: ATCC (HB-8065)
cell line: HepG2
cell type: Hepatocellular carcinoma
chip antibody: HNRNPUL1 (Abcam Cat# ab68480)
Original files (1)
HepG2
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR7868864 32991506 1319660240 514.04 HNRNPUL1_ChIP_rep1_HepG2_batch17.fastq.gz, SRR7868864, SRR7868864.sra… SRA
SRR7868865 36210094 1448403760 577.36 HNRNPUL1_ChIP_rep2_HepG2_batch17.fastq.gz, SRR7868865, SRR7868865.sra… SRA
SRX4708026 SRP162019 ChIP-Seq SINGLE
GSM3393540: PTBP1_ChIP-seq_HepG2; Homo sapiens; ChIP-Seq
Sample: SRS3793729
BioProject: PRJNA491668
BioSample: SAMN10081945
Platform: ILLUMINA
Instrument: Illumina HiSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: HepG2
biomaterial_provider: ATCC (HB-8065)
cell line: HepG2
cell type: Hepatocellular carcinoma
chip antibody: PTBP1 (MBL Cat# RN011P)
Original files (1)
HepG2
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR7868866 50897740 2016558854 1022.77 PTBP1_ChIP_rep1_HepG2_batch3.fastq.gz, SRR7868866, SRR7868866.sralite SRA
SRR7868867 36290222 1427848646 801.46 PTBP1_ChIP_rep2_HepG2_batch3.fastq.gz, SRR7868867, SRR7868867.sralite SRA
SRX4708027 SRP162019 ChIP-Seq SINGLE
GSM3393541: PCBP1_ChIP-seq_HepG2; Homo sapiens; ChIP-Seq
Sample: SRS3793730
BioProject: PRJNA491668
BioSample: SAMN10081944
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: HepG2
biomaterial_provider: ATCC (HB-8065)
cell line: HepG2
cell type: Hepatocellular carcinoma
chip antibody: PCBP1 (MBL Cat# RN024P)
Original files (1)
HepG2
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR7868868 23433241 937329640 380.96 PCBP1_ChIP_rep1_HepG2_batch17.fastq.gz, SRR7868868, SRR7868868.sralite SRA
SRR7868869 20637498 825499920 346.63 PCBP1_ChIP_rep2_HepG2_batch17.fastq.gz, SRR7868869, SRR7868869.sralite SRA
SRX4708028 SRP162019 ChIP-Seq SINGLE
GSM3393542: PCBP2_ChIP-seq_HepG2; Homo sapiens; ChIP-Seq
Sample: SRS3793731
BioProject: PRJNA491668
BioSample: SAMN10081942
Platform: ILLUMINA
Instrument: Illumina HiSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: HepG2
biomaterial_provider: ATCC (HB-8065)
cell line: HepG2
cell type: Hepatocellular carcinoma
chip antibody: PCBP2 (MBL Cat# RN025P)
Original files (1)
HepG2
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR7868870 43067136 1722685440 774.83 PCBP2_ChIP_rep1_HepG2_batch7.fastq.gz, SRR7868870, SRR7868870.sralite SRA
SRR7868871 46293235 1851729400 839.7 PCBP2_ChIP_rep2_HepG2_batch7.fastq.gz, SRR7868871, SRR7868871.sralite SRA
SRX4708029 SRP162019 ChIP-Seq SINGLE
GSM3393543: FUS_ChIP-seq_HepG2; Homo sapiens; ChIP-Seq
Sample: SRS3793732
BioProject: PRJNA491668
BioSample: SAMN10081941
Platform: ILLUMINA
Instrument: Illumina HiSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: HepG2
biomaterial_provider: ATCC (HB-8065)
cell line: HepG2
cell type: Hepatocellular carcinoma
chip antibody: FUS (Bethyl Cat# A300-294A)
Original files (1)
HepG2
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR7868872 23490129 939605160 465.65 FUS_ChIP_rep1_HepG2_batch12.fastq.gz, SRR7868872, SRR7868872.sralite SRA
SRR7868873 38862529 1554501160 755.01 FUS_ChIP_rep2_HepG2_batch12.fastq.gz, SRR7868873, SRR7868873.sralite SRA
SRX4708030 SRP162019 ChIP-Seq SINGLE
GSM3393544: TAF15_ChIP-seq_HepG2; Homo sapiens; ChIP-Seq
Sample: SRS3793735
BioProject: PRJNA491668
BioSample: SAMN10081939
Platform: ILLUMINA
Instrument: Illumina HiSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: HepG2
biomaterial_provider: ATCC (HB-8065)
cell line: HepG2
cell type: Hepatocellular carcinoma
chip antibody: TAF15 (Abcam Cat# ab134916)
Original files (1)
HepG2
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR7868874 39039252 1561570080 737.85 TAF15_ChIP_rep1_HepG2_batch12.fastq.gz, SRR7868874, SRR7868874.sralite SRA
SRR7868875 71326311 2853052440 1336.69 TAF15_ChIP_rep2_HepG2_batch12.fastq.gz, SRR7868875, SRR7868875.sralite SRA
SRX4708031 SRP162019 ChIP-Seq SINGLE
GSM3393545: SNRNP70_ChIP-seq_HepG2; Homo sapiens; ChIP-Seq
Sample: SRS3793733
BioProject: PRJNA491668
BioSample: SAMN10081938
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: HepG2
biomaterial_provider: ATCC (HB-8065)
cell line: HepG2
cell type: Hepatocellular carcinoma
chip antibody: SNRNP70 (Santa Cruz Biotechnology Cat# sc-9571)
Original files (1)
HepG2
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR7868876 29486985 1179479400 443.89 SNRNP70_ChIP_rep1_HepG2_batch17.fastq.gz, SRR7868876, SRR7868876.sral… SRA
SRR7868877 33513683 1340547320 526.41 SNRNP70_ChIP_rep2_HepG2_batch17.fastq.gz, SRR7868877, SRR7868877.sral… SRA
SRX4708032 SRP162019 ChIP-Seq SINGLE
GSM3393546: PRPF4_ChIP-seq_HepG2; Homo sapiens; ChIP-Seq
Sample: SRS3793734
BioProject: PRJNA491668
BioSample: SAMN10081908
Platform: ILLUMINA
Instrument: Illumina HiSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: HepG2
biomaterial_provider: ATCC (HB-8065)
cell line: HepG2
cell type: Hepatocellular carcinoma
chip antibody: PRPF4 (MBL Cat# RN093PW)
Original files (1)
HepG2
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR7868878 34014358 1360574320 611.05 PRPF4_ChIP_rep1_HepG2_batch7.fastq.gz, SRR7868878, SRR7868878.sralite SRA
SRR7868879 57424453 2296978120 1034.43 PRPF4_ChIP_rep2_HepG2_batch7.fastq.gz, SRR7868879, SRR7868879.sralite SRA
SRX4708033 SRP162019 ChIP-Seq SINGLE
GSM3393547: FIP1L1_ChIP-seq_HepG2; Homo sapiens; ChIP-Seq
Sample: SRS3793736
BioProject: PRJNA491668
BioSample: SAMN10081907
Platform: ILLUMINA
Instrument: Illumina HiSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: HepG2
biomaterial_provider: ATCC (HB-8065)
cell line: HepG2
cell type: Hepatocellular carcinoma
chip antibody: FIP1L1 (Abclonal Cat# #A5016)
Original files (1)
HepG2
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR7868880 20667037 826681480 385.38 FIP1L1_ChIP_rep1_HepG2_batch8.fastq.gz, SRR7868880, SRR7868880.sralite SRA
SRR7868881 19317468 772698720 376.71 FIP1L1_ChIP_rep2_HepG2_batch8.fastq.gz, SRR7868881, SRR7868881.sralite SRA
SRX4708034 SRP162019 ChIP-Seq SINGLE
GSM3393548: RBFOX2_ChIP-seq_HepG2; Homo sapiens; ChIP-Seq
Sample: SRS3793738
BioProject: PRJNA491668
BioSample: SAMN10081906
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: HepG2
biomaterial_provider: ATCC (HB-8065)
cell line: HepG2
cell type: Hepatocellular carcinoma
chip antibody: RBFOX2 (Bethyl Cat# A300-864A)
Original files (1)
HepG2
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR7868882 19446967 777878680 293.14 RBFOX2_ChIP_rep1_HepG2_batch16.fastq.gz, SRR7868882, SRR7868882.srali… SRA
SRR7868883 17901547 716061880 271.24 RBFOX2_ChIP_rep2_HepG2_batch16.fastq.gz, SRR7868883, SRR7868883.srali… SRA
SRX4708035 SRP162019 ChIP-Seq SINGLE
GSM3393549: RBM22_ChIP-seq_HepG2; Homo sapiens; ChIP-Seq
Sample: SRS3793737
BioProject: PRJNA491668
BioSample: SAMN10081905
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: HepG2
biomaterial_provider: ATCC (HB-8065)
cell line: HepG2
cell type: Hepatocellular carcinoma
chip antibody: RBM22 (Bethyl Cat# A303-923A)
Original files (1)
HepG2
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR7868884 39441781 1577671240 740.29 RBM22_ChIP_rep1_HepG2_batch13.fastq.gz, SRR7868884, SRR7868884.sralite SRA
SRR7868885 42640827 1705633080 820.9 RBM22_ChIP_rep2_HepG2_batch13.fastq.gz, SRR7868885, SRR7868885.sralite SRA
SRX4708036 SRP162019 ChIP-Seq SINGLE
GSM3393550: RBM25_ChIP-seq_HepG2; Homo sapiens; ChIP-Seq
Sample: SRS3793740
BioProject: PRJNA491668
BioSample: SAMN10081903
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: HepG2
biomaterial_provider: ATCC (HB-8065)
cell line: HepG2
cell type: Hepatocellular carcinoma
chip antibody: RBM25 (Bethyl Cat# A301-068A)
Original files (1)
HepG2
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR7868886 23394192 935767680 436.16 RBM25_ChIP_rep1_HepG2_batch14.fastq.gz, SRR7868886, SRR7868886.sralite SRA
SRR7868887 31319126 1252765040 574.98 RBM25_ChIP_rep2_HepG2_batch14.fastq.gz, SRR7868887, SRR7868887.sralite SRA
SRX4708037 SRP162019 ChIP-Seq SINGLE
GSM3393551: RBM39_ChIP-seq_HepG2; Homo sapiens; ChIP-Seq
Sample: SRS3793739
BioProject: PRJNA491668
BioSample: SAMN10081901
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: HepG2
biomaterial_provider: ATCC (HB-8065)
cell line: HepG2
cell type: Hepatocellular carcinoma
chip antibody: RBM39 (Bethyl Cat# A300-291A)
Original files (1)
HepG2
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR7868888 75398089 3015923560 1120.69 RBM39_ChIP_rep1_HepG2_batch14.fastq.gz, SRR7868888, SRR7868888.sralite SRA
SRR7868889 128553595 5142143800 1907.83 RBM39_ChIP_rep2_HepG2_batch14.fastq.gz, SRR7868889, SRR7868889.sralite SRA
SRX4708038 SRP162019 ChIP-Seq SINGLE
GSM3393552: AGO1_ChIP-seq_HepG2; Homo sapiens; ChIP-Seq
Sample: SRS3793741
BioProject: PRJNA491668
BioSample: SAMN10081900
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: HepG2
biomaterial_provider: ATCC (HB-8065)
cell line: HepG2
cell type: Hepatocellular carcinoma
chip antibody: AGO1 (Cell Signaling Technology Cat# 5053)
Original files (1)
HepG2
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR7868890 54979405 2199176200 847.66 AGO1_ChIP_rep1_HepG2_batch16.fastq.gz, SRR7868890, SRR7868890.sralite SRA
SRR7868891 68489198 2739567920 1036.92 AGO1_ChIP_rep2_HepG2_batch16.fastq.gz, SRR7868891, SRR7868891.sralite SRA
SRX4708039 SRP162019 ChIP-Seq SINGLE
GSM3393553: AGO2_ChIP-seq_HepG2; Homo sapiens; ChIP-Seq
Sample: SRS3793742
BioProject: PRJNA491668
BioSample: SAMN10081898
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: HepG2
biomaterial_provider: ATCC (HB-8065)
cell line: HepG2
cell type: Hepatocellular carcinoma
chip antibody: AGO2 (Abnova Cat# H00027161-M01)
Original files (1)
HepG2
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR7868892 32624891 1304995640 463.92 AGO2_ChIP_rep1_HepG2_batch16.fastq.gz, SRR7868892, SRR7868892.sralite SRA
SRR7868893 36226474 1449058960 513.65 AGO2_ChIP_rep2_HepG2_batch16.fastq.gz, SRR7868893, SRR7868893.sralite SRA
SRX4708040 SRP162019 ChIP-Seq SINGLE
GSM3393554: SAFB2_ChIP-seq_HepG2; Homo sapiens; ChIP-Seq
Sample: SRS3793743
BioProject: PRJNA491668
BioSample: SAMN10081896
Platform: ILLUMINA
Instrument: Illumina HiSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: HepG2
biomaterial_provider: ATCC (HB-8065)
cell line: HepG2
cell type: Hepatocellular carcinoma
chip antibody: SAFB2 (Bethyl Cat# A301-112A)
Original files (1)
HepG2
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR7868894 22078894 883155760 430.26 SAFB2_ChIP_rep1_HepG2_batch10.fastq.gz, SRR7868894, SRR7868894.sralite SRA
SRR7868895 23900461 956018440 460.83 SAFB2_ChIP_rep2_HepG2_batch10.fastq.gz, SRR7868895, SRR7868895.sralite SRA
SRX4708041 SRP162019 ChIP-Seq SINGLE
GSM3393555: NONO_ChIP-seq_HepG2; Homo sapiens; ChIP-Seq
Sample: SRS3793746
BioProject: PRJNA491668
BioSample: SAMN10082002
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: HepG2
biomaterial_provider: ATCC (HB-8065)
cell line: HepG2
cell type: Hepatocellular carcinoma
chip antibody: NONO (Santa Cruz Biotechnology Cat# sc-166702)
Original files (1)
HepG2
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR7868896 20396148 815845920 340.8 NONO_ChIP_rep1_HepG2_batch14.fastq.gz, SRR7868896, SRR7868896.sralite SRA
SRR7868897 18968702 758748080 317.24 NONO_ChIP_rep2_HepG2_batch14.fastq.gz, SRR7868897, SRR7868897.sralite SRA
SRX4708042 SRP162019 ChIP-Seq SINGLE
GSM3393556: GTF2F1_ChIP-seq_HepG2; Homo sapiens; ChIP-Seq
Sample: SRS3793745
BioProject: PRJNA491668
BioSample: SAMN10082001
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: HepG2
biomaterial_provider: ATCC (HB-8065)
cell line: HepG2
cell type: Hepatocellular carcinoma
chip antibody: GTF2F1 (GeneTex Cat# GTX114455)
Original files (1)
HepG2
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR7868898 22696638 907865520 348.62 GTF2F1_ChIP_rep1_HepG2_batch17.fastq.gz, SRR7868898, SRR7868898.srali… SRA
SRR7868899 25458994 1018359760 394.5 GTF2F1_ChIP_rep2_HepG2_batch17.fastq.gz, SRR7868899, SRR7868899.srali… SRA
SRX4708043 SRP162019 ChIP-Seq SINGLE
GSM3393557: POLR2G_ChIP-seq_HepG2; Homo sapiens; ChIP-Seq
Sample: SRS3793744
BioProject: PRJNA491668
BioSample: SAMN10082000
Platform: ILLUMINA
Instrument: Illumina HiSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: HepG2
biomaterial_provider: ATCC (HB-8065)
cell line: HepG2
cell type: Hepatocellular carcinoma
chip antibody: POLR2G (GeneTex Cat# GTX108874)
Original files (1)
HepG2
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR7868900 23755128 950205120 450.43 POLR2G_ChIP_rep1_HepG2_batch7.fastq.gz, SRR7868900, SRR7868900.sralite SRA
SRR7868901 30607730 1224309200 549.91 POLR2G_ChIP_rep2_HepG2_batch7.fastq.gz, SRR7868901, SRR7868901.sralite SRA
SRX4708044 SRP162019 ChIP-Seq SINGLE
GSM3393558: SFPQ_ChIP-seq_HepG2; Homo sapiens; ChIP-Seq
Sample: SRS3793747
BioProject: PRJNA491668
BioSample: SAMN10081999
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: HepG2
biomaterial_provider: ATCC (HB-8065)
cell line: HepG2
cell type: Hepatocellular carcinoma
chip antibody: SFPQ (Bethyl Cat# A301-321A)
Original files (1)
HepG2
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR7868902 22309766 892390640 358.33 SFPQ_ChIP_rep1_HepG2_batch17.fastq.gz, SRR7868902, SRR7868902.sralite SRA
SRR7868903 22643289 905731560 366.73 SFPQ_ChIP_rep2_HepG2_batch17.fastq.gz, SRR7868903, SRR7868903.sralite SRA
SRX4708045 SRP162019 ChIP-Seq SINGLE
GSM3393559: TARDBP_ChIP-seq_HepG2; Homo sapiens; ChIP-Seq
Sample: SRS3793748
BioProject: PRJNA491668
BioSample: SAMN10081998
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: HepG2
biomaterial_provider: ATCC (HB-8065)
cell line: HepG2
cell type: Hepatocellular carcinoma
chip antibody: TARDBP (Bethyl Cat# A303-223A)
Original files (1)
HepG2
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR7868904 41487762 1659510480 716.17 TARDBP_ChIP_rep1_HepG2_batch15.fastq.gz, SRR7868904, SRR7868904.srali… SRA
SRR7868905 39327645 1573105800 672.16 TARDBP_ChIP_rep2_HepG2_batch15.fastq.gz, SRR7868905, SRR7868905.srali… SRA
SRX4708046 SRP162019 ChIP-Seq SINGLE
GSM3393560: XRCC5_ChIP-seq_HepG2; Homo sapiens; ChIP-Seq
Sample: SRS3793749
BioProject: PRJNA491668
BioSample: SAMN10081997
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: HepG2
biomaterial_provider: ATCC (HB-8065)
cell line: HepG2
cell type: Hepatocellular carcinoma
chip antibody: XRCC5 (Zen BioScience Cat# 201004)
Original files (1)
HepG2
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR7868906 36285322 1451412880 496.16 XRCC5_ChIP_rep1_HepG2_batch16.fastq.gz, SRR7868906, SRR7868906.sralite SRA
SRR7868907 42157025 1686281000 573.15 XRCC5_ChIP_rep2_HepG2_batch16.fastq.gz, SRR7868907, SRR7868907.sralite SRA
SRX4708047 SRP162019 ChIP-Seq SINGLE
GSM3393561: CCAR2_ChIP-seq_HepG2; Homo sapiens; ChIP-Seq
Sample: SRS3793754
BioProject: PRJNA491668
BioSample: SAMN10081996
Platform: ILLUMINA
Instrument: Illumina HiSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: HepG2
biomaterial_provider: ATCC (HB-8065)
cell line: HepG2
cell type: Hepatocellular carcinoma
chip antibody: CCAR2 (Zen BioScience Cat# 200093)
Original files (1)
HepG2
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR7868908 53723691 2148947640 1155.98 CCAR2_ChIP_rep1_HepG2_batch11.fastq.gz, SRR7868908, SRR7868908.sralite SRA
SRR7868909 52354800 2094192000 1138.52 CCAR2_ChIP_rep2_HepG2_batch11.fastq.gz, SRR7868909, SRR7868909.sralite SRA
SRX4708048 SRP162019 ChIP-Seq SINGLE
GSM3393562: input_Control_HepG2_batch3; Homo sapiens; ChIP-Seq
Sample: SRS3793750
BioProject: PRJNA491668
BioSample: SAMN10081995
Platform: ILLUMINA
Instrument: Illumina HiSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: HepG2
biomaterial_provider: ATCC (HB-8065)
cell line: HepG2
cell type: Hepatocellular carcinoma
Original files (1)
HepG2
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR7868910 51658218 2000487724 1349.0 input_Control_rep1_HepG2_batch3.fastq.gz, SRR7868910, SRR7868910.sral… SRA
SRR7868911 50661902 1964638724 1326.45 input_Control_rep2_HepG2_batch3.fastq.gz, SRR7868911, SRR7868911.sral… SRA
SRX4708049 SRP162019 ChIP-Seq SINGLE
GSM3393563: input_Control_HepG2_batch5; Homo sapiens; ChIP-Seq
Sample: SRS3793751
BioProject: PRJNA491668
BioSample: SAMN10081994
Platform: ILLUMINA
Instrument: Illumina HiSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: HepG2
biomaterial_provider: ATCC (HB-8065)
cell line: HepG2
cell type: Hepatocellular carcinoma
Original files (1)
HepG2
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR7868912 48190490 1927619600 980.87 input_Control_rep1_HepG2_batch5.fastq.gz, SRR7868912, SRR7868912.sral… SRA
SRR7868913 52280534 2091221360 1092.19 input_Control_rep2_HepG2_batch5.fastq.gz, SRR7868913, SRR7868913.sral… SRA
SRX4708050 SRP162019 ChIP-Seq SINGLE
GSM3393564: input_Control_HepG2_batch6; Homo sapiens; ChIP-Seq
Sample: SRS3793752
BioProject: PRJNA491668
BioSample: SAMN10081993
Platform: ILLUMINA
Instrument: Illumina HiSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: HepG2
biomaterial_provider: ATCC (HB-8065)
cell line: HepG2
cell type: Hepatocellular carcinoma
Original files (1)
HepG2
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR7868914 36647910 1465916400 717.91 input_Control_rep1_HepG2_batch6.fastq.gz, SRR7868914, SRR7868914.sral… SRA
SRR7868915 33473336 1338933440 696.89 input_Control_rep2_HepG2_batch6.fastq.gz, SRR7868915, SRR7868915.sral… SRA
SRX4708051 SRP162019 ChIP-Seq SINGLE
GSM3393565: input_Control_HepG2_batch7; Homo sapiens; ChIP-Seq
Sample: SRS3793753
BioProject: PRJNA491668
BioSample: SAMN10081991
Platform: ILLUMINA
Instrument: Illumina HiSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: HepG2
biomaterial_provider: ATCC (HB-8065)
cell line: HepG2
cell type: Hepatocellular carcinoma
Original files (1)
HepG2
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR7868916 32440778 1297631120 652.02 input_Control_rep1_HepG2_batch7.fastq.gz, SRR7868916, SRR7868916.sral… SRA
SRR7868917 41845910 1673836400 837.8 input_Control_rep2_HepG2_batch7.fastq.gz, SRR7868917, SRR7868917.sral… SRA
SRX4708052 SRP162019 ChIP-Seq SINGLE
GSM3393566: input_Control_HepG2_batch8; Homo sapiens; ChIP-Seq
Sample: SRS3793755
BioProject: PRJNA491668
BioSample: SAMN10081990
Platform: ILLUMINA
Instrument: Illumina HiSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: HepG2
biomaterial_provider: ATCC (HB-8065)
cell line: HepG2
cell type: Hepatocellular carcinoma
Original files (1)
HepG2
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR7868918 50118319 2004732760 964.15 input_Control_rep1_HepG2_batch8.fastq.gz, SRR7868918, SRR7868918.sral… SRA
SRR7868919 34821700 1392868000 739.52 input_Control_rep2_HepG2_batch8.fastq.gz, SRR7868919, SRR7868919.sral… SRA
SRX4708053 SRP162019 ChIP-Seq SINGLE
GSM3393567: input_Control_HepG2_batch10; Homo sapiens; ChIP-Seq
Sample: SRS3793758
BioProject: PRJNA491668
BioSample: SAMN10081989
Platform: ILLUMINA
Instrument: Illumina HiSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: HepG2
biomaterial_provider: ATCC (HB-8065)
cell line: HepG2
cell type: Hepatocellular carcinoma
Original files (1)
HepG2
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR7868920 45862967 1834518680 900.49 input_Control_rep1_HepG2_batch10.fastq.gz, SRR7868920, SRR7868920.sra… SRA
SRR7868921 42002238 1680089520 874.84 input_Control_rep2_HepG2_batch10.fastq.gz, SRR7868921, SRR7868921.sra… SRA
SRX4708054 SRP162019 ChIP-Seq SINGLE
GSM3393568: input_Control_HepG2_batch11; Homo sapiens; ChIP-Seq
Sample: SRS3793759
BioProject: PRJNA491668
BioSample: SAMN10081988
Platform: ILLUMINA
Instrument: Illumina HiSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: HepG2
biomaterial_provider: ATCC (HB-8065)
cell line: HepG2
cell type: Hepatocellular carcinoma
Original files (1)
HepG2
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR7868922 50449849 2017993960 917.11 input_Control_rep1_HepG2_batch11.fastq.gz, SRR7868922, SRR7868922.sra… SRA
SRR7868923 44955300 1798212000 868.17 input_Control_rep2_HepG2_batch11.fastq.gz, SRR7868923, SRR7868923.sra… SRA
SRX4708055 SRP162019 ChIP-Seq SINGLE
GSM3393569: input_Control_HepG2_batch12; Homo sapiens; ChIP-Seq
Sample: SRS3793762
BioProject: PRJNA491668
BioSample: SAMN10081987
Platform: ILLUMINA
Instrument: Illumina HiSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: HepG2
biomaterial_provider: ATCC (HB-8065)
cell line: HepG2
cell type: Hepatocellular carcinoma
Original files (1)
HepG2
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR7868924 45495313 1819812520 898.94 input_Control_rep1_HepG2_batch12.fastq.gz, SRR7868924, SRR7868924.sra… SRA
SRR7868925 58716645 2348665800 1155.29 input_Control_rep2_HepG2_batch12.fastq.gz, SRR7868925, SRR7868925.sra… SRA
SRX4708056 SRP162019 ChIP-Seq SINGLE
GSM3393570: input_Control_HepG2_batch13; Homo sapiens; ChIP-Seq
Sample: SRS3793756
BioProject: PRJNA491668
BioSample: SAMN10082027
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: HepG2
biomaterial_provider: ATCC (HB-8065)
cell line: HepG2
cell type: Hepatocellular carcinoma
Original files (1)
HepG2
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR7868926 108574977 4342999080 2325.68 input_Control_rep1_HepG2_batch13.fastq.gz, SRR7868926, SRR7868926.sra… SRA
SRR7868927 102863960 4114558400 2175.38 input_Control_rep2_HepG2_batch13.fastq.gz, SRR7868927, SRR7868927.sra… SRA
SRX4708057 SRP162019 ChIP-Seq SINGLE
GSM3393571: input_Control_HepG2_batch14; Homo sapiens; ChIP-Seq
Sample: SRS3793760
BioProject: PRJNA491668
BioSample: SAMN10082026
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: HepG2
biomaterial_provider: ATCC (HB-8065)
cell line: HepG2
cell type: Hepatocellular carcinoma
Original files (1)
HepG2
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR7868928 33670603 1346824120 556.77 input_Control_rep1_HepG2_batch14.fastq.gz, SRR7868928, SRR7868928.sra… SRA
SRR7868929 44487495 1779499800 721.4 input_Control_rep2_HepG2_batch14.fastq.gz, SRR7868929, SRR7868929.sra… SRA
SRX4708058 SRP162019 ChIP-Seq SINGLE
GSM3393572: input_Control_HepG2_batch15; Homo sapiens; ChIP-Seq
Sample: SRS3793761
BioProject: PRJNA491668
BioSample: SAMN10082025
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: HepG2
biomaterial_provider: ATCC (HB-8065)
cell line: HepG2
cell type: Hepatocellular carcinoma
Original files (1)
HepG2
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR7868930 37964483 1518579320 594.94 input_Control_rep1_HepG2_batch15.fastq.gz, SRR7868930, SRR7868930.sra… SRA
SRR7868931 40674926 1626997040 691.86 input_Control_rep2_HepG2_batch15.fastq.gz, SRR7868931, SRR7868931.sra… SRA
SRX4708059 SRP162019 ChIP-Seq SINGLE
GSM3393573: input_Control_HepG2_batch16; Homo sapiens; ChIP-Seq
Sample: SRS3793757
BioProject: PRJNA491668
BioSample: SAMN10082017
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: HepG2
biomaterial_provider: ATCC (HB-8065)
cell line: HepG2
cell type: Hepatocellular carcinoma
Original files (1)
HepG2
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR7868932 44410121 1776404840 664.25 input_Control_rep1_HepG2_batch16.fastq.gz, SRR7868932, SRR7868932.sra… SRA
SRR7868933 40537154 1621486160 608.42 input_Control_rep2_HepG2_batch16.fastq.gz, SRR7868933, SRR7868933.sra… SRA
SRX4708060 SRP162019 ChIP-Seq SINGLE
GSM3393574: input_Control_HepG2_batch17; Homo sapiens; ChIP-Seq
Sample: SRS3793763
BioProject: PRJNA491668
BioSample: SAMN10082024
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: HepG2
biomaterial_provider: ATCC (HB-8065)
cell line: HepG2
cell type: Hepatocellular carcinoma
Original files (1)
HepG2
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR7868934 36576721 1463068840 575.43 input_Control_rep1_HepG2_batch17.fastq.gz, SRR7868934, SRR7868934.sra… SRA
SRR7868935 40399514 1615980560 635.24 input_Control_rep2_HepG2_batch17.fastq.gz, SRR7868935, SRR7868935.sra… SRA
SRX4708061 SRP162019 ChIP-Seq SINGLE
GSM3393575: SRSF1_ChIP-seq_K562; Homo sapiens; ChIP-Seq
Sample: SRS3793767
BioProject: PRJNA491668
BioSample: SAMN10082023
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: K562
biomaterial_provider: ATCC (CCL-243)
cell line: K562
cell type: Hepatocellular carcinoma
chip antibody: SRSF1 (Bethyl Cat#A302-052A)
Original files (1)
K562
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR7868936 26791698 1071667920 417.49 SRSF1_ChIP_rep1_K562_batch11.fastq.gz, SRR7868936, SRR7868936.sralite SRA
SRR7868937 28748489 1149939560 452.49 SRSF1_ChIP_rep2_K562_batch11.fastq.gz, SRR7868937, SRR7868937.sralite SRA
SRX4708062 SRP162019 ChIP-Seq SINGLE
GSM3393576: SRSF3_ChIP-seq_K562; Homo sapiens; ChIP-Seq
Sample: SRS3793764
BioProject: PRJNA491668
BioSample: SAMN10082022
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: K562
biomaterial_provider: ATCC (CCL-243)
cell line: K562
cell type: Hepatocellular carcinoma
chip antibody: SRSF3 (MBL Cat# RN080PW)
Original files (1)
K562
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR7868938 25428955 1017158200 338.63 SRSF3_ChIP_rep1_K562_batch4.fastq.gz, SRR7868938, SRR7868938.sralite SRA
SRR7868939 36487283 1459491320 496.22 SRSF3_ChIP_rep2_K562_batch4.fastq.gz, SRR7868939, SRR7868939.sralite SRA
SRX4708063 SRP162019 ChIP-Seq SINGLE
GSM3393577: SRSF4_ChIP-seq_K562; Homo sapiens; ChIP-Seq
Sample: SRS3793770
BioProject: PRJNA491668
BioSample: SAMN10082021
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: K562
biomaterial_provider: ATCC (CCL-243)
cell line: K562
cell type: Hepatocellular carcinoma
chip antibody: SRSF4 (Bethyl Cat# A303-670A)
Original files (1)
K562
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR7868940 23698017 947920680 360.15 SRSF4_ChIP_rep1_K562_batch6.fastq.gz, SRR7868940, SRR7868940.sralite SRA
SRR7868941 28136218 1125448720 398.08 SRSF4_ChIP_rep2_K562_batch6.fastq.gz, SRR7868941, SRR7868941.sralite SRA
SRX4708064 SRP162019 ChIP-Seq SINGLE
GSM3393578: SRSF7_ChIP-seq_K562; Homo sapiens; ChIP-Seq
Sample: SRS3793768
BioProject: PRJNA491668
BioSample: SAMN10082020
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: K562
biomaterial_provider: ATCC (CCL-243)
cell line: K562
cell type: Hepatocellular carcinoma
chip antibody: SRSF7 (MBL Cat# RN079PW)
Original files (1)
K562
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR7868942 22734702 909388080 323.72 SRSF7_ChIP_rep1_K562_batch4.fastq.gz, SRR7868942, SRR7868942.sralite SRA
SRR7868943 20070514 802820560 280.94 SRSF7_ChIP_rep2_K562_batch4.fastq.gz, SRR7868943, SRR7868943.sralite SRA
SRX4708065 SRP162019 ChIP-Seq SINGLE
GSM3393579: SRSF9_ChIP-seq_K562; Homo sapiens; ChIP-Seq
Sample: SRS3793765
BioProject: PRJNA491668
BioSample: SAMN10082019
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: K562
biomaterial_provider: ATCC (CCL-243)
cell line: K562
cell type: Hepatocellular carcinoma
chip antibody: SRSF9 (MBL Cat# RN081PW)
Original files (1)
K562
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR7868944 19790840 791633600 271.15 SRSF9_ChIP_rep1_K562_batch4.fastq.gz, SRR7868944, SRR7868944.sralite SRA
SRR7868945 17598443 703937720 241.84 SRSF9_ChIP_rep2_K562_batch4.fastq.gz, SRR7868945, SRR7868945.sralite SRA
SRX4708066 SRP162019 ChIP-Seq SINGLE
GSM3393580: U2AF1_ChIP-seq_K562; Homo sapiens; ChIP-Seq
Sample: SRS3793769
BioProject: PRJNA491668
BioSample: SAMN10082018
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: K562
biomaterial_provider: ATCC (CCL-243)
cell line: K562
cell type: Hepatocellular carcinoma
chip antibody: U2AF1 (Bethyl Cat# A302-079A)
Original files (1)
K562
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR7868946 30123928 1204957120 458.64 U2AF1_ChIP_rep1_K562_batch11.fastq.gz, SRR7868946, SRR7868946.sralite SRA
SRR7868947 31931468 1277258720 500.35 U2AF1_ChIP_rep2_K562_batch11.fastq.gz, SRR7868947, SRR7868947.sralite SRA
SRX4708067 SRP162019 ChIP-Seq SINGLE
GSM3393581: U2AF2_ChIP-seq_K562; Homo sapiens; ChIP-Seq
Sample: SRS3793766
BioProject: PRJNA491668
BioSample: SAMN10082016
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: K562
biomaterial_provider: ATCC (CCL-243)
cell line: K562
cell type: Hepatocellular carcinoma
chip antibody: U2AF2 (Bethyl Cat# A303-665A)
Original files (1)
K562
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR7868948 18762119 750484760 305.28 U2AF2_ChIP_rep1_K562_batch11.fastq.gz, SRR7868948, SRR7868948.sralite SRA
SRR7868949 21224511 848980440 351.04 U2AF2_ChIP_rep2_K562_batch11.fastq.gz, SRR7868949, SRR7868949.sralite SRA
SRX4708068 SRP162019 ChIP-Seq SINGLE
GSM3393582: HNRNPC_ChIP-seq_K562; Homo sapiens; ChIP-Seq
Sample: SRS3793771
BioProject: PRJNA491668
BioSample: SAMN10082015
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: K562
biomaterial_provider: ATCC (CCL-243)
cell line: K562
cell type: Hepatocellular carcinoma
chip antibody: HNRNPC (Santa Cruz Biotechnology Cat# sc-10037)
Original files (1)
K562
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR7868950 21102328 844093120 291.53 HNRNPC_ChIP_rep1_K562_batch4.fastq.gz, SRR7868950, SRR7868950.sralite SRA
SRR7868951 21972761 878910440 304.97 HNRNPC_ChIP_rep2_K562_batch4.fastq.gz, SRR7868951, SRR7868951.sralite SRA
SRX4708069 SRP162019 ChIP-Seq SINGLE
GSM3393583: HNRNPH1_ChIP-seq_K562; Homo sapiens; ChIP-Seq
Sample: SRS3793772
BioProject: PRJNA491668
BioSample: SAMN10082014
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: K562
biomaterial_provider: ATCC (CCL-243)
cell line: K562
cell type: Hepatocellular carcinoma
chip antibody: HNRNPH1 (Aviva Cat# ARP58479_P050)
Original files (1)
K562
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR7868952 27473749 1098949960 426.45 HNRNPH1_ChIP_rep1_K562_batch11.fastq.gz, SRR7868952, SRR7868952.srali… SRA
SRR7868953 28997710 1159908400 458.55 HNRNPH1_ChIP_rep2_K562_batch11.fastq.gz, SRR7868953, SRR7868953.srali… SRA
SRX4708070 SRP162019 ChIP-Seq SINGLE
GSM3393584: HNRNPK_ChIP-seq_K562; Homo sapiens; ChIP-Seq
Sample: SRS3793773
BioProject: PRJNA491668
BioSample: SAMN10082013
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: K562
biomaterial_provider: ATCC (CCL-243)
cell line: K562
cell type: Hepatocellular carcinoma
chip antibody: HNRNPK (MBL Cat# RN019P)
Original files (1)
K562
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR7868954 61903458 2476138320 887.88 HNRNPK_ChIP_rep1_K562_batch1.fastq.gz, SRR7868954, SRR7868954.sralite SRA
SRR7868955 67347081 2693883240 965.21 HNRNPK_ChIP_rep2_K562_batch1.fastq.gz, SRR7868955, SRR7868955.sralite SRA
SRX4708071 SRP162019 ChIP-Seq SINGLE
GSM3393585: HNRNPL_ChIP-seq_K562; Homo sapiens; ChIP-Seq
Sample: SRS3793774
BioProject: PRJNA491668
BioSample: SAMN10081936
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: K562
biomaterial_provider: ATCC (CCL-243)
cell line: K562
cell type: Hepatocellular carcinoma
chip antibody: HNRNPL (Aviva Cat# ARP40368_P050)
Original files (1)
K562
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR7868956 22716868 908674720 359.59 HNRNPL_ChIP_rep1_K562_batch9.fastq.gz, SRR7868956, SRR7868956.sralite SRA
SRR7868957 24817979 992719160 392.2 HNRNPL_ChIP_rep2_K562_batch9.fastq.gz, SRR7868957, SRR7868957.sralite SRA
SRX4708072 SRP162019 ChIP-Seq SINGLE
GSM3393586: HNRNPLL_ChIP-seq_K562; Homo sapiens; ChIP-Seq
Sample: SRS3793775
BioProject: PRJNA491668
BioSample: SAMN10081935
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: K562
biomaterial_provider: ATCC (CCL-243)
cell line: K562
cell type: Hepatocellular carcinoma
chip antibody: HNRNPLL (Cell Signaling Technology Cat# 4783S)
Original files (1)
K562
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR7868958 69789532 2791581280 1003.46 HNRNPLL_ChIP_rep1_K562_batch9.fastq.gz, SRR7868958, SRR7868958.sralite SRA
SRR7868959 76273602 3050944080 1101.47 HNRNPLL_ChIP_rep2_K562_batch9.fastq.gz, SRR7868959, SRR7868959.sralite SRA
SRX4708073 SRP162019 ChIP-Seq SINGLE
GSM3393587: HNRNPUL1_ChIP-seq_K562; Homo sapiens; ChIP-Seq
Sample: SRS3793776
BioProject: PRJNA491668
BioSample: SAMN10081933
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: K562
biomaterial_provider: ATCC (CCL-243)
cell line: K562
cell type: Hepatocellular carcinoma
chip antibody: HNRNPUL1 (Abcam Cat# ab68480)
Original files (1)
K562
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR7868960 45701646 1828065840 701.26 HNRNPUL1_ChIP_rep1_K562_batch11.fastq.gz, SRR7868960, SRR7868960.sral… SRA
SRR7868961 38979512 1559180480 601.62 HNRNPUL1_ChIP_rep2_K562_batch11.fastq.gz, SRR7868961, SRR7868961.sral… SRA
SRX4708074 SRP162019 ChIP-Seq SINGLE
GSM3393588: PTBP1_ChIP-seq_K562; Homo sapiens; ChIP-Seq
Sample: SRS3793777
BioProject: PRJNA491668
BioSample: SAMN10081931
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: K562
biomaterial_provider: ATCC (CCL-243)
cell line: K562
cell type: Hepatocellular carcinoma
chip antibody: PTBP1 (MBL Cat# RN011P)
Original files (1)
K562
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR7868962 17339027 693561080 256.4 PTBP1_ChIP_rep1_K562_batch10.fastq.gz, SRR7868962, SRR7868962.sralite SRA
SRR7868963 17178034 687121360 254.31 PTBP1_ChIP_rep2_K562_batch10.fastq.gz, SRR7868963, SRR7868963.sralite SRA
SRX4708075 SRP162019 ChIP-Seq SINGLE
GSM3393589: PCBP1_ChIP-seq_K562; Homo sapiens; ChIP-Seq
Sample: SRS3793778
BioProject: PRJNA491668
BioSample: SAMN10081930
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: K562
biomaterial_provider: ATCC (CCL-243)
cell line: K562
cell type: Hepatocellular carcinoma
chip antibody: PCBP1 (MBL Cat# RN024P)
Original files (1)
K562
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR7868964 52233873 2089354920 750.08 PCBP1_ChIP_rep1_K562_batch2.fastq.gz, SRR7868964, SRR7868964.sralite SRA
SRR7868965 47549353 1901974120 684.57 PCBP1_ChIP_rep2_K562_batch2.fastq.gz, SRR7868965, SRR7868965.sralite SRA
SRX4708076 SRP162019 ChIP-Seq SINGLE
GSM3393590: PCBP2_ChIP-seq_K562; Homo sapiens; ChIP-Seq
Sample: SRS3793782
BioProject: PRJNA491668
BioSample: SAMN10081928
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: K562
biomaterial_provider: ATCC (CCL-243)
cell line: K562
cell type: Hepatocellular carcinoma
chip antibody: PCBP2 (MBL Cat# RN025P)
Original files (1)
K562
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR7868966 54543253 2181730120 773.73 PCBP2_ChIP_rep1_K562_batch2.fastq.gz, SRR7868966, SRR7868966.sralite SRA
SRR7868967 25740233 1029609320 354.68 PCBP2_ChIP_rep2_K562_batch2.fastq.gz, SRR7868967, SRR7868967.sralite SRA
SRX4708077 SRP162019 ChIP-Seq SINGLE
GSM3393591: FUS_ChIP-seq_K562; Homo sapiens; ChIP-Seq
Sample: SRS3793779
BioProject: PRJNA491668
BioSample: SAMN10081926
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: K562
biomaterial_provider: ATCC (CCL-243)
cell line: K562
cell type: Hepatocellular carcinoma
chip antibody: FUS (Bethyl Cat# A300-294A)
Original files (1)
K562
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR7868968 16401575 656063000 243.59 FUS_ChIP_rep1_K562_batch10.fastq.gz, SRR7868968, SRR7868968.sralite SRA
SRR7868969 16827379 673095160 251.48 FUS_ChIP_rep2_K562_batch10.fastq.gz, SRR7868969, SRR7868969.sralite SRA
SRX4708078 SRP162019 ChIP-Seq SINGLE
GSM3393592: TAF15_ChIP-seq_K562; Homo sapiens; ChIP-Seq
Sample: SRS3793780
BioProject: PRJNA491668
BioSample: SAMN10081924
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: K562
biomaterial_provider: ATCC (CCL-243)
cell line: K562
cell type: Hepatocellular carcinoma
chip antibody: TAF15 (Abcam Cat# ab134916)
Original files (1)
K562
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR7868970 21806544 872261760 334.75 TAF15_ChIP_rep1_K562_batch9.fastq.gz, SRR7868970, SRR7868970.sralite SRA
SRR7868971 26281233 1051249320 419.15 TAF15_ChIP_rep2_K562_batch9.fastq.gz, SRR7868971, SRR7868971.sralite SRA
SRX4708079 SRP162019 ChIP-Seq SINGLE
GSM3393593: SNRNP70_ChIP-seq_K562; Homo sapiens; ChIP-Seq
Sample: SRS3793784
BioProject: PRJNA491668
BioSample: SAMN10081923
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: K562
biomaterial_provider: ATCC (CCL-243)
cell line: K562
cell type: Hepatocellular carcinoma
chip antibody: SNRNP70 (Santa Cruz Biotechnology Cat# sc-9571)
Original files (1)
K562
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR7868972 25235366 1009414640 388.84 SNRNP70_ChIP_rep1_K562_batch11.fastq.gz, SRR7868972, SRR7868972.srali… SRA
SRR7868973 25942973 1037718920 403.21 SNRNP70_ChIP_rep2_K562_batch11.fastq.gz, SRR7868973, SRR7868973.srali… SRA
SRX4708080 SRP162019 ChIP-Seq SINGLE
GSM3393594: PRPF4_ChIP-seq_K562; Homo sapiens; ChIP-Seq
Sample: SRS3793783
BioProject: PRJNA491668
BioSample: SAMN10081921
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: K562
biomaterial_provider: ATCC (CCL-243)
cell line: K562
cell type: Hepatocellular carcinoma
chip antibody: PRPF4 (MBL Cat# RN093PW)
Original files (1)
K562
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR7868974 112246126 4489845040 1655.47 PRPF4_ChIP_rep1_K562_batch2.fastq.gz, SRR7868974, SRR7868974.sralite SRA
SRR7868975 102700385 4108015400 1513.87 PRPF4_ChIP_rep2_K562_batch2.fastq.gz, SRR7868975, SRR7868975.sralite SRA
SRX4708081 SRP162019 ChIP-Seq SINGLE
GSM3393595: FIP1L1_ChIP-seq_K562; Homo sapiens; ChIP-Seq
Sample: SRS3793781
BioProject: PRJNA491668
BioSample: SAMN10081919
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: K562
biomaterial_provider: ATCC (CCL-243)
cell line: K562
cell type: Hepatocellular carcinoma
chip antibody: FIP1L1 (Abclonal Cat# #A5016)
Original files (1)
K562
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR7868976 20557766 822310640 286.38 FIP1L1_ChIP_rep1_K562_batch6.fastq.gz, SRR7868976, SRR7868976.sralite SRA
SRR7868977 27314914 1092596560 385.24 FIP1L1_ChIP_rep2_K562_batch6.fastq.gz, SRR7868977, SRR7868977.sralite SRA
SRX4708082 SRP162019 ChIP-Seq SINGLE
GSM3393596: RBFOX2_ChIP-seq_K562; Homo sapiens; ChIP-Seq
Sample: SRS3793785
BioProject: PRJNA491668
BioSample: SAMN10081917
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: K562
biomaterial_provider: ATCC (CCL-243)
cell line: K562
cell type: Hepatocellular carcinoma
chip antibody: RBFOX2 (Bethyl Cat# A300-864A)
Original files (1)
K562
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR7868978 33040804 1321632160 460.82 RBFOX2_ChIP_rep1_K562_batch10.fastq.gz, SRR7868978, SRR7868978.sralite SRA
SRR7868979 39196626 1567865040 544.24 RBFOX2_ChIP_rep2_K562_batch10.fastq.gz, SRR7868979, SRR7868979.sralite SRA
SRX4708083 SRP162019 ChIP-Seq SINGLE
GSM3393597: RBM22_ChIP-seq_K562; Homo sapiens; ChIP-Seq
Sample: SRS3793786
BioProject: PRJNA491668
BioSample: SAMN10081915
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: K562
biomaterial_provider: ATCC (CCL-243)
cell line: K562
cell type: Hepatocellular carcinoma
chip antibody: RBM22 (Bethyl Cat# A303-923A)
Original files (1)
K562
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR7868980 39511240 1580449600 537.56 RBM22_ChIP_rep1_K562_batch5.fastq.gz, SRR7868980, SRR7868980.sralite SRA
SRR7868981 38178884 1527155360 532.98 RBM22_ChIP_rep2_K562_batch5.fastq.gz, SRR7868981, SRR7868981.sralite SRA
SRX4708084 SRP162019 ChIP-Seq SINGLE
GSM3393598: RBM25_ChIP-seq_K562; Homo sapiens; ChIP-Seq
Sample: SRS3793788
BioProject: PRJNA491668
BioSample: SAMN10081913
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: K562
biomaterial_provider: ATCC (CCL-243)
cell line: K562
cell type: Hepatocellular carcinoma
chip antibody: RBM25 (Bethyl Cat# A301-068A)
Original files (1)
K562
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR7868982 30840200 1233608000 431.05 RBM25_ChIP_rep1_K562_batch5.fastq.gz, SRR7868982, SRR7868982.sralite SRA
SRR7868983 31141643 1245665720 433.4 RBM25_ChIP_rep2_K562_batch5.fastq.gz, SRR7868983, SRR7868983.sralite SRA
SRX4708085 SRP162019 ChIP-Seq SINGLE
GSM3393599: RBM39_ChIP-seq_K562; Homo sapiens; ChIP-Seq
Sample: SRS3793789
BioProject: PRJNA491668
BioSample: SAMN10081912
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: K562
biomaterial_provider: ATCC (CCL-243)
cell line: K562
cell type: Hepatocellular carcinoma
chip antibody: RBM39 (Bethyl Cat# A300-291A)
Original files (1)
K562
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR7868984 30171050 1206842000 466.97 RBM39_ChIP_rep1_K562_batch11.fastq.gz, SRR7868984, SRR7868984.sralite SRA
SRR7868985 28500699 1140027960 441.57 RBM39_ChIP_rep2_K562_batch11.fastq.gz, SRR7868985, SRR7868985.sralite SRA
SRX4708086 SRP162019 ChIP-Seq SINGLE
GSM3393600: AGO1_ChIP-seq_K562; Homo sapiens; ChIP-Seq
Sample: SRS3793790
BioProject: PRJNA491668
BioSample: SAMN10081910
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: K562
biomaterial_provider: ATCC (CCL-243)
cell line: K562
cell type: Hepatocellular carcinoma
chip antibody: AGO1 (Cell Signaling Technology Cat# 5053)
Original files (1)
K562
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR7868986 35125255 1405010200 570.42 AGO1_ChIP_rep1_K562_batch10.fastq.gz, SRR7868986, SRR7868986.sralite SRA
SRR7868987 32338303 1293532120 532.38 AGO1_ChIP_rep2_K562_batch10.fastq.gz, SRR7868987, SRR7868987.sralite SRA
SRX4708087 SRP162019 ChIP-Seq SINGLE
GSM3393601: SAFB_ChIP-seq_K562; Homo sapiens; ChIP-Seq
Sample: SRS3793787
BioProject: PRJNA491668
BioSample: SAMN10081986
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: K562
biomaterial_provider: ATCC (CCL-243)
cell line: K562
cell type: Hepatocellular carcinoma
chip antibody: SAFB (Zen BioScience Cat# 200580)
Original files (1)
K562
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR7868988 24265978 970639120 339.08 SAFB_ChIP_rep1_K562_batch3.fastq.gz, SRR7868988, SRR7868988.sralite SRA
SRR7868989 21945410 877816400 303.94 SAFB_ChIP_rep2_K562_batch3.fastq.gz, SRR7868989, SRR7868989.sralite SRA
SRX4708088 SRP162019 ChIP-Seq SINGLE
GSM3393602: SAFB2_ChIP-seq_K562; Homo sapiens; ChIP-Seq
Sample: SRS3793791
BioProject: PRJNA491668
BioSample: SAMN10081984
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: K562
biomaterial_provider: ATCC (CCL-243)
cell line: K562
cell type: Hepatocellular carcinoma
chip antibody: SAFB2 (Bethyl Cat# A301-112A)
Original files (1)
K562
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR7868990 16931708 677268320 230.63 SAFB2_ChIP_rep1_K562_batch5.fastq.gz, SRR7868990, SRR7868990.sralite SRA
SRR7868991 22329231 893169240 306.89 SAFB2_ChIP_rep2_K562_batch5.fastq.gz, SRR7868991, SRR7868991.sralite SRA
SRX4708089 SRP162019 ChIP-Seq SINGLE
GSM3393603: NONO_ChIP-seq_K562; Homo sapiens; ChIP-Seq
Sample: SRS3793792
BioProject: PRJNA491668
BioSample: SAMN10081983
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: K562
biomaterial_provider: ATCC (CCL-243)
cell line: K562
cell type: Hepatocellular carcinoma
chip antibody: NONO (Santa Cruz Biotechnology Cat# sc-166702)
Original files (1)
K562
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR7868992 20459522 818380880 340.05 NONO_ChIP_rep1_K562_batch8.fastq.gz, SRR7868992, SRR7868992.sralite SRA
SRR7868993 17528376 701135040 290.85 NONO_ChIP_rep2_K562_batch8.fastq.gz, SRR7868993, SRR7868993.sralite SRA
SRX4708090 SRP162019 ChIP-Seq SINGLE
GSM3393604: GTF2F1_ChIP-seq_K562; Homo sapiens; ChIP-Seq
Sample: SRS3793793
BioProject: PRJNA491668
BioSample: SAMN10081981
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: K562
biomaterial_provider: ATCC (CCL-243)
cell line: K562
cell type: Hepatocellular carcinoma
chip antibody: GTF2F1 (GeneTex Cat# GTX114455)
Original files (1)
K562
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR7868994 52153832 2086153280 773.73 GTF2F1_ChIP_rep1_K562_batch3.fastq.gz, SRR7868994, SRR7868994.sralite SRA
SRR7868995 36119910 1444796400 510.56 GTF2F1_ChIP_rep2_K562_batch3.fastq.gz, SRR7868995, SRR7868995.sralite SRA
SRX4708091 SRP162019 ChIP-Seq SINGLE
GSM3393605: POLR2G_ChIP-seq_K562; Homo sapiens; ChIP-Seq
Sample: SRS3793794
BioProject: PRJNA491668
BioSample: SAMN10081980
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: K562
biomaterial_provider: ATCC (CCL-243)
cell line: K562
cell type: Hepatocellular carcinoma
chip antibody: POLR2G (GeneTex Cat# GTX108874)
Original files (1)
K562
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR7868996 33211083 1328443320 455.19 POLR2G_ChIP_rep1_K562_batch10.fastq.gz, SRR7868996, SRR7868996.sralite SRA
SRR7868997 30346181 1213847240 419.59 POLR2G_ChIP_rep2_K562_batch10.fastq.gz, SRR7868997, SRR7868997.sralite SRA
SRX4708092 SRP162019 ChIP-Seq SINGLE
GSM3393606: SFPQ_ChIP-seq_K562; Homo sapiens; ChIP-Seq
Sample: SRS3793795
BioProject: PRJNA491668
BioSample: SAMN10081978
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: K562
biomaterial_provider: ATCC (CCL-243)
cell line: K562
cell type: Hepatocellular carcinoma
chip antibody: SFPQ (Bethyl Cat# A301-321A)
Original files (1)
K562
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR7868998 30919868 1236794720 489.28 SFPQ_ChIP_rep1_K562_batch9.fastq.gz, SRR7868998, SRR7868998.sralite SRA
SRR7868999 26345835 1053833400 417.64 SFPQ_ChIP_rep2_K562_batch9.fastq.gz, SRR7868999, SRR7868999.sralite SRA
SRX4708093 SRP162019 ChIP-Seq SINGLE
GSM3393607: TARDBP_ChIP-seq_K562; Homo sapiens; ChIP-Seq
Sample: SRS3793798
BioProject: PRJNA491668
BioSample: SAMN10081976
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: K562
biomaterial_provider: ATCC (CCL-243)
cell line: K562
cell type: Hepatocellular carcinoma
chip antibody: TARDBP (Bethyl Cat# A303-223A)
Original files (1)
K562
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR7869000 40766206 1630648240 569.93 TARDBP_ChIP_rep1_K562_batch10.fastq.gz, SRR7869000, SRR7869000.sralite SRA
SRR7869001 42488981 1699559240 594.61 TARDBP_ChIP_rep2_K562_batch10.fastq.gz, SRR7869001, SRR7869001.sralite SRA
SRX4708094 SRP162019 ChIP-Seq SINGLE
GSM3393608: XRCC5_ChIP-seq_K562; Homo sapiens; ChIP-Seq
Sample: SRS3793797
BioProject: PRJNA491668
BioSample: SAMN10081975
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: K562
biomaterial_provider: ATCC (CCL-243)
cell line: K562
cell type: Hepatocellular carcinoma
chip antibody: XRCC5 (Zen BioScience Cat# 201004)
Original files (1)
K562
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR7869002 37182748 1487309920 805.28 XRCC5_ChIP_rep1_K562_batch7.fastq.gz, SRR7869002, SRR7869002.sralite SRA
SRR7869003 30753962 1230158480 668.03 XRCC5_ChIP_rep2_K562_batch7.fastq.gz, SRR7869003, SRR7869003.sralite SRA
SRX4708095 SRP162019 ChIP-Seq SINGLE
GSM3393609: CCAR2_ChIP-seq_K562; Homo sapiens; ChIP-Seq
Sample: SRS3793800
BioProject: PRJNA491668
BioSample: SAMN10081973
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: K562
biomaterial_provider: ATCC (CCL-243)
cell line: K562
cell type: Hepatocellular carcinoma
chip antibody: CCAR2 (Zen BioScience Cat# 200093)
Original files (1)
K562
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR7869004 22262167 890486680 344.21 CCAR2_ChIP_rep1_K562_batch11.fastq.gz, SRR7869004, SRR7869004.sralite SRA
SRR7869005 21825022 873000880 338.46 CCAR2_ChIP_rep2_K562_batch11.fastq.gz, SRR7869005, SRR7869005.sralite SRA
SRX4708096 SRP162019 ChIP-Seq SINGLE
GSM3393610: input_Control_K562_batch1; Homo sapiens; ChIP-Seq
Sample: SRS3793796
BioProject: PRJNA491668
BioSample: SAMN10081971
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: K562
biomaterial_provider: ATCC (CCL-243)
cell line: K562
cell type: Hepatocellular carcinoma
Original files (1)
K562
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR7869006 46268080 1850723200 672.16 input_Control_rep1_K562_batch1.fastq.gz, SRR7869006, SRR7869006.srali… SRA
SRR7869007 42053204 1682128160 614.19 input_Control_rep2_K562_batch1.fastq.gz, SRR7869007, SRR7869007.srali… SRA
SRX4708097 SRP162019 ChIP-Seq SINGLE
GSM3393611: input_Control_K562_batch2; Homo sapiens; ChIP-Seq
Sample: SRS3793801
BioProject: PRJNA491668
BioSample: SAMN10081969
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: K562
biomaterial_provider: ATCC (CCL-243)
cell line: K562
cell type: Hepatocellular carcinoma
Original files (1)
K562
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR7869008 45337890 1813515600 633.76 input_Control_rep1_K562_batch2.fastq.gz, SRR7869008, SRR7869008.srali… SRA
SRR7869009 45450285 1818011400 636.8 input_Control_rep2_K562_batch2.fastq.gz, SRR7869009, SRR7869009.srali… SRA
SRX4708098 SRP162019 ChIP-Seq SINGLE
GSM3393612: input_Control_K562_batch3; Homo sapiens; ChIP-Seq
Sample: SRS3793802
BioProject: PRJNA491668
BioSample: SAMN10081968
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: K562
biomaterial_provider: ATCC (CCL-243)
cell line: K562
cell type: Hepatocellular carcinoma
Original files (1)
K562
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR7869010 42909650 1716386000 591.26 input_Control_rep1_K562_batch3.fastq.gz, SRR7869010, SRR7869010.srali… SRA
SRR7869011 45983061 1839322440 636.97 input_Control_rep2_K562_batch3.fastq.gz, SRR7869011, SRR7869011.srali… SRA
SRX4708099 SRP162019 ChIP-Seq SINGLE
GSM3393613: input_Control_K562_batch4; Homo sapiens; ChIP-Seq
Sample: SRS3793799
BioProject: PRJNA491668
BioSample: SAMN10081967
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: K562
biomaterial_provider: ATCC (CCL-243)
cell line: K562
cell type: Hepatocellular carcinoma
Original files (1)
K562
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR7869012 39809574 1592382960 549.32 input_Control_rep1_K562_batch4.fastq.gz, SRR7869012, SRR7869012.srali… SRA
SRR7869013 39601694 1584067760 542.79 input_Control_rep2_K562_batch4.fastq.gz, SRR7869013, SRR7869013.srali… SRA
SRX4708100 SRP162019 ChIP-Seq SINGLE
GSM3393614: input_Control_K562_batch5; Homo sapiens; ChIP-Seq
Sample: SRS3793804
BioProject: PRJNA491668
BioSample: SAMN10081966
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: K562
biomaterial_provider: ATCC (CCL-243)
cell line: K562
cell type: Hepatocellular carcinoma
Original files (1)
K562
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR7869014 53122733 2124909320 750.97 input_Control_rep1_K562_batch5.fastq.gz, SRR7869014, SRR7869014.srali… SRA
SRR7869015 59942955 2397718200 852.16 input_Control_rep2_K562_batch5.fastq.gz, SRR7869015, SRR7869015.srali… SRA
SRX4708101 SRP162019 ChIP-Seq SINGLE
GSM3393615: input_Control_K562_batch6; Homo sapiens; ChIP-Seq
Sample: SRS3793803
BioProject: PRJNA491668
BioSample: SAMN10081964
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: K562
biomaterial_provider: ATCC (CCL-243)
cell line: K562
cell type: Hepatocellular carcinoma
Original files (1)
K562
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR7869016 50521429 2020857160 706.73 input_Control_rep1_K562_batch6.fastq.gz, SRR7869016, SRR7869016.srali… SRA
SRR7869017 55420982 2216839280 779.8 input_Control_rep2_K562_batch6.fastq.gz, SRR7869017, SRR7869017.srali… SRA
SRX4708102 SRP162019 ChIP-Seq SINGLE
GSM3393616: input_Control_K562_batch7; Homo sapiens; ChIP-Seq
Sample: SRS3793805
BioProject: PRJNA491668
BioSample: SAMN10081962
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: K562
biomaterial_provider: ATCC (CCL-243)
cell line: K562
cell type: Hepatocellular carcinoma
Original files (1)
K562
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR7869018 87455968 3498238720 1893.71 input_Control_rep1_K562_batch7.fastq.gz, SRR7869018, SRR7869018.srali… SRA
SRR7869019 99877767 3995110680 2162.5 input_Control_rep2_K562_batch7.fastq.gz, SRR7869019, SRR7869019.srali… SRA
SRX4708103 SRP162019 ChIP-Seq SINGLE
GSM3393617: input_Control_K562_batch8; Homo sapiens; ChIP-Seq
Sample: SRS3793807
BioProject: PRJNA491668
BioSample: SAMN10081960
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: K562
biomaterial_provider: ATCC (CCL-243)
cell line: K562
cell type: Hepatocellular carcinoma
Original files (1)
K562
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR7869020 30484090 1219363600 502.04 input_Control_rep1_K562_batch8.fastq.gz, SRR7869020, SRR7869020.srali… SRA
SRR7869021 44332086 1773283440 731.08 input_Control_rep2_K562_batch8.fastq.gz, SRR7869021, SRR7869021.srali… SRA
SRX4708104 SRP162019 ChIP-Seq SINGLE
GSM3393618: input_Control_K562_batch9; Homo sapiens; ChIP-Seq
Sample: SRS3793808
BioProject: PRJNA491668
BioSample: SAMN10081958
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: K562
biomaterial_provider: ATCC (CCL-243)
cell line: K562
cell type: Hepatocellular carcinoma
Original files (1)
K562
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR7869022 42510618 1700424720 640.4 input_Control_rep1_K562_batch9.fastq.gz, SRR7869022, SRR7869022.srali… SRA
SRR7869023 45615738 1824629520 690.05 input_Control_rep2_K562_batch9.fastq.gz, SRR7869023, SRR7869023.srali… SRA
SRX4708105 SRP162019 ChIP-Seq SINGLE
GSM3393619: input_Control_K562_batch10; Homo sapiens; ChIP-Seq
Sample: SRS3793809
BioProject: PRJNA491668
BioSample: SAMN10081956
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: K562
biomaterial_provider: ATCC (CCL-243)
cell line: K562
cell type: Hepatocellular carcinoma
Original files (1)
K562
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR7869024 45295439 1811817560 693.24 input_Control_rep1_K562_batch10.fastq.gz, SRR7869024, SRR7869024.sral… SRA
SRR7869025 38310111 1532404440 561.33 input_Control_rep2_K562_batch10.fastq.gz, SRR7869025, SRR7869025.sral… SRA
SRX4708106 SRP162019 ChIP-Seq SINGLE
GSM3393620: input_Control_K562_batch11; Homo sapiens; ChIP-Seq
Sample: SRS3793806
BioProject: PRJNA491668
BioSample: SAMN10081955
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: K562
biomaterial_provider: ATCC (CCL-243)
cell line: K562
cell type: Hepatocellular carcinoma
Original files (1)
K562
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR7869026 32963240 1318529600 522.83 input_Control_rep1_K562_batch11.fastq.gz, SRR7869026, SRR7869026.sral… SRA
SRR7869027 32278118 1291124720 510.64 input_Control_rep2_K562_batch11.fastq.gz, SRR7869027, SRR7869027.sral… SRA
SRX4708107 SRP162019 ChIP-Seq PAIRED
GSM3393621: RBM25_NC ChIP-seq rep1; Homo sapiens; ChIP-Seq
Sample: SRS3793810
BioProject: PRJNA491668
BioSample: SAMN10081953
Platform: ILLUMINA
Instrument: HiSeq X Ten
Organism: Homo sapiens
Sample attributes
source_name: HepG2
biomaterial_provider: ATCC (HB-8065)
cell line: HepG2
cell type: Hepatocellular carcinoma
chip antibody: RBM25 (Bethyl Cat# A301-068A)
Original files (1)
HepG2
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR7869028 15923783 4777134900 1782.36 RBM25chip-NC.rep1_R1.fq.gz, RBM25chip-NC.rep1_R2.fq.gz, SRR7869028, S… SRA
SRX4708108 SRP162019 ChIP-Seq PAIRED
GSM3393622: RBM25_NC ChIP-seq rep2; Homo sapiens; ChIP-Seq
Sample: SRS3793811
BioProject: PRJNA491668
BioSample: SAMN10081952
Platform: ILLUMINA
Instrument: HiSeq X Ten
Organism: Homo sapiens
Sample attributes
source_name: HepG2
biomaterial_provider: ATCC (HB-8065)
cell line: HepG2
cell type: Hepatocellular carcinoma
chip antibody: RBM25 (Bethyl Cat# A301-068A)
Original files (1)
HepG2
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR7869029 17887600 5366280000 1985.22 RBM25chip-NC.rep2_R1.fq.gz, RBM25chip-NC.rep2_R2.fq.gz, SRR7869029, S… SRA
SRX4708109 SRP162019 ChIP-Seq PAIRED
GSM3393623: RBM25_YY1-KD ChIP-seq rep1; Homo sapiens; ChIP-Seq
Sample: SRS3793812
BioProject: PRJNA491668
BioSample: SAMN10082035
Platform: ILLUMINA
Instrument: HiSeq X Ten
Organism: Homo sapiens
Sample attributes
source_name: HepG2
biomaterial_provider: ATCC (HB-8065)
cell line: HepG2
cell type: Hepatocellular carcinoma
chip antibody: RBM25 (Bethyl Cat# A301-068A)
Original files (1)
HepG2
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR7869030 12339696 3701908800 1381.21 RBM25chip-yy1kd.rep1_R1.fq.gz, RBM25chip-yy1kd.rep1_R2.fq.gz, SRR7869… SRA
SRX4708110 SRP162019 ChIP-Seq PAIRED
GSM3393624: RBM25_YY1-KD ChIP-seq rep2; Homo sapiens; ChIP-Seq
Sample: SRS3793813
BioProject: PRJNA491668
BioSample: SAMN10081950
Platform: ILLUMINA
Instrument: HiSeq X Ten
Organism: Homo sapiens
Sample attributes
source_name: HepG2
biomaterial_provider: ATCC (HB-8065)
cell line: HepG2
cell type: Hepatocellular carcinoma
chip antibody: RBM25 (Bethyl Cat# A301-068A)
Original files (1)
HepG2
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR7869031 17572265 5271679500 1947.99 RBM25chip-yy1kd.rep2_R1.fq.gz, RBM25chip-yy1kd.rep2_R2.fq.gz, SRR7869… SRA
SRX4708111 SRP162019 ChIP-Seq PAIRED
GSM3393625: RBM25_NC ChIP-seq Input rep1; Homo sapiens; ChIP-Seq
Sample: SRS3793817
BioProject: PRJNA491668
BioSample: SAMN10081949
Platform: ILLUMINA
Instrument: HiSeq X Ten
Organism: Homo sapiens
Sample attributes
source_name: HepG2
biomaterial_provider: ATCC (HB-8065)
cell line: HepG2
cell type: Hepatocellular carcinoma
Original files (1)
HepG2
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR7869032 17526336 5257900800 2119.8 input-NC4rbm25chip-rep1_R1.fq.gz, input-NC4rbm25chip-rep1_R2.fq.gz, S… SRA
SRX4708112 SRP162019 ChIP-Seq PAIRED
GSM3393626: RBM25_NC ChIP-seq Input rep2; Homo sapiens; ChIP-Seq
Sample: SRS3793814
BioProject: PRJNA491668
BioSample: SAMN10081947
Platform: ILLUMINA
Instrument: HiSeq X Ten
Organism: Homo sapiens
Sample attributes
source_name: HepG2
biomaterial_provider: ATCC (HB-8065)
cell line: HepG2
cell type: Hepatocellular carcinoma
Original files (1)
HepG2
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR7869033 17713791 5314137300 2061.77 input-NC4rbm25chip-rep2_R1.fq.gz, input-NC4rbm25chip-rep2_R2.fq.gz, S… SRA
SRX4708113 SRP162019 ChIP-Seq PAIRED
GSM3393627: RBM25_YY1-KD ChIP-seq Input rep1; Homo sapiens; ChIP-Seq
Sample: SRS3793815
BioProject: PRJNA491668
BioSample: SAMN10082012
Platform: ILLUMINA
Instrument: HiSeq X Ten
Organism: Homo sapiens
Sample attributes
source_name: HepG2
biomaterial_provider: ATCC (HB-8065)
cell line: HepG2
cell type: Hepatocellular carcinoma
Original files (1)
HepG2
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR7869034 20406044 6121813200 2473.45 input-yy1kd4rbm25chip-rep1_R1.fq.gz, input-yy1kd4rbm25chip-rep1_R2.fq… SRA
SRX4708114 SRP162019 ChIP-Seq PAIRED
GSM3393628: RBM25_YY1-KD ChIP-seq Input rep2; Homo sapiens; ChIP-Seq
Sample: SRS3793818
BioProject: PRJNA491668
BioSample: SAMN10082011
Platform: ILLUMINA
Instrument: HiSeq X Ten
Organism: Homo sapiens
Sample attributes
source_name: HepG2
biomaterial_provider: ATCC (HB-8065)
cell line: HepG2
cell type: Hepatocellular carcinoma
Original files (1)
HepG2
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR7869035 16902288 5070686400 2077.47 input-yy1kd4rbm25chip-rep2_R1.fq.gz, input-yy1kd4rbm25chip-rep2_R2.fq… SRA
SRX4708115 SRP162019 ChIP-Seq PAIRED
GSM3393629: YY1_NC ChIP-seq rep1; Homo sapiens; ChIP-Seq
Sample: SRS3793820
BioProject: PRJNA491668
BioSample: SAMN10082007
Platform: ILLUMINA
Instrument: HiSeq X Ten
Organism: Homo sapiens
Sample attributes
source_name: HepG2
biomaterial_provider: ATCC (HB-8065)
cell line: HepG2
cell type: Hepatocellular carcinoma
chip antibody: YY1 (Proteintech Cat# 66281-1-lg)
Original files (1)
HepG2
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR7869036 7823926 2347177800 885.22 YY1chip-NC.rep1_R1.fq.gz, YY1chip-NC.rep1_R2.fq.gz, SRR7869036, SRR78… SRA
SRX4708116 SRP162019 ChIP-Seq PAIRED
GSM3393630: YY1_NC ChIP-seq rep2; Homo sapiens; ChIP-Seq
Sample: SRS3793819
BioProject: PRJNA491668
BioSample: SAMN10082006
Platform: ILLUMINA
Instrument: HiSeq X Ten
Organism: Homo sapiens
Sample attributes
source_name: HepG2
biomaterial_provider: ATCC (HB-8065)
cell line: HepG2
cell type: Hepatocellular carcinoma
chip antibody: YY1 (Proteintech Cat# 66281-1-lg)
Original files (1)
HepG2
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR7869037 9567965 2870389500 1078.06 YY1chip-NC.rep2_R1.fq.gz, YY1chip-NC.rep2_R2.fq.gz, SRR7869037, SRR78… SRA
SRX4708117 SRP162019 ChIP-Seq PAIRED
GSM3393631: YY1_RBM25-KD ChIP-seq rep1; Homo sapiens; ChIP-Seq
Sample: SRS3793816
BioProject: PRJNA491668
BioSample: SAMN10082005
Platform: ILLUMINA
Instrument: HiSeq X Ten
Organism: Homo sapiens
Sample attributes
source_name: HepG2
biomaterial_provider: ATCC (HB-8065)
cell line: HepG2
cell type: Hepatocellular carcinoma
chip antibody: YY1 (Proteintech Cat# 66281-1-lg)
Original files (1)
HepG2
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR7869038 7396132 2218839600 823.85 YY1chip-rbm25kd.rep1_R1.fq.gz, YY1chip-rbm25kd.rep1_R2.fq.gz, SRR7869… SRA
SRX4708118 SRP162019 ChIP-Seq PAIRED
GSM3393632: YY1_RBM25-KD ChIP-seq rep2; Homo sapiens; ChIP-Seq
Sample: SRS3793821
BioProject: PRJNA491668
BioSample: SAMN10082004
Platform: ILLUMINA
Instrument: HiSeq X Ten
Organism: Homo sapiens
Sample attributes
source_name: HepG2
biomaterial_provider: ATCC (HB-8065)
cell line: HepG2
cell type: Hepatocellular carcinoma
chip antibody: YY1 (Proteintech Cat# 66281-1-lg)
Original files (1)
HepG2
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR7869039 12895032 3868509600 1417.35 YY1chip-rbm25kd.rep2_R1.fq.gz, YY1chip-rbm25kd.rep2_R2.fq.gz, SRR7869… SRA
SRX4708119 SRP162019 ChIP-Seq PAIRED
GSM3393633: YY1_NC ChIP-seq Input rep1; Homo sapiens; ChIP-Seq
Sample: SRS3793822
BioProject: PRJNA491668
BioSample: SAMN10082003
Platform: ILLUMINA
Instrument: HiSeq X Ten
Organism: Homo sapiens
Sample attributes
source_name: HepG2
biomaterial_provider: ATCC (HB-8065)
cell line: HepG2
cell type: Hepatocellular carcinoma
Original files (1)
HepG2
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR7869040 19642296 5892688800 2299.2 input-NC4yy1chip-rep1_R1.fq.gz, input-NC4yy1chip-rep1_R2.fq.gz, SRR78… SRA
SRX4708120 SRP162019 ChIP-Seq PAIRED
GSM3393634: YY1_NC ChIP-seq Input rep2; Homo sapiens; ChIP-Seq
Sample: SRS3793824
BioProject: PRJNA491668
BioSample: SAMN10082010
Platform: ILLUMINA
Instrument: HiSeq X Ten
Organism: Homo sapiens
Sample attributes
source_name: HepG2
biomaterial_provider: ATCC (HB-8065)
cell line: HepG2
cell type: Hepatocellular carcinoma
Original files (1)
HepG2
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR7869041 16013226 4803967800 1836.67 input-NC4yy1chip-rep2_R1.fq.gz, input-NC4yy1chip-rep2_R2.fq.gz, SRR78… SRA
SRX4708121 SRP162019 ChIP-Seq PAIRED
GSM3393635: YY1_RBM25-KD ChIP-seq Input rep1; Homo sapiens; ChIP-Seq
Sample: SRS3793823
BioProject: PRJNA491668
BioSample: SAMN10082009
Platform: ILLUMINA
Instrument: HiSeq X Ten
Organism: Homo sapiens
Sample attributes
source_name: HepG2
biomaterial_provider: ATCC (HB-8065)
cell line: HepG2
cell type: Hepatocellular carcinoma
Original files (1)
HepG2
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR7869042 15143561 4543068300 1779.95 input-rbm25kd4yy1chip-rep1_R1.fq.gz, input-rbm25kd4yy1chip-rep1_R2.fq… SRA
SRX4708122 SRP162019 ChIP-Seq PAIRED
GSM3393636: YY1_RBM25-KD ChIP-seq Input rep2; Homo sapiens; ChIP-Seq
Sample: SRS3793825
BioProject: PRJNA491668
BioSample: SAMN10082008
Platform: ILLUMINA
Instrument: HiSeq X Ten
Organism: Homo sapiens
Sample attributes
source_name: HepG2
biomaterial_provider: ATCC (HB-8065)
cell line: HepG2
cell type: Hepatocellular carcinoma
Original files (1)
HepG2
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR7869043 16842380 5052714000 1907.66 input-rbm25kd4yy1chip-rep2_R1.fq.gz, input-rbm25kd4yy1chip-rep2_R2.fq… SRA

Linked Publications (1)

Pervasive Chromatin-RNA Binding Protein Interactions Enable RNA-Based Regulation of Transcription.
Cell · 2019

Data Files (217)

Accession File Name Stored Type Output Type Mapping Assembly Size Download
— AGO1_ChIP_rep1_HepG2_batch16.fastq.gz ChIP-Seq 847.7 MB link
— AGO1_ChIP_rep1_K562_batch10.fastq.gz ChIP-Seq 570.4 MB link
— AGO1_ChIP_rep2_HepG2_batch16.fastq.gz ChIP-Seq 1.0 GB link
— AGO1_ChIP_rep2_K562_batch10.fastq.gz ChIP-Seq 532.4 MB link
— AGO2_ChIP_rep1_HepG2_batch16.fastq.gz ChIP-Seq 463.9 MB link
— AGO2_ChIP_rep2_HepG2_batch16.fastq.gz ChIP-Seq 513.6 MB link
— CCAR2_ChIP_rep1_HepG2_batch11.fastq.gz ChIP-Seq 1.1 GB link
— CCAR2_ChIP_rep1_K562_batch11.fastq.gz ChIP-Seq 344.2 MB link
— CCAR2_ChIP_rep2_HepG2_batch11.fastq.gz ChIP-Seq 1.1 GB link
— CCAR2_ChIP_rep2_K562_batch11.fastq.gz ChIP-Seq 338.5 MB link
— FIP1L1_ChIP_rep1_HepG2_batch8.fastq.gz ChIP-Seq 385.4 MB link
— FIP1L1_ChIP_rep1_K562_batch6.fastq.gz ChIP-Seq 286.4 MB link
— FIP1L1_ChIP_rep2_HepG2_batch8.fastq.gz ChIP-Seq 376.7 MB link
— FIP1L1_ChIP_rep2_K562_batch6.fastq.gz ChIP-Seq 385.2 MB link
— FUS_ChIP_rep1_HepG2_batch12.fastq.gz ChIP-Seq 465.6 MB link
— FUS_ChIP_rep1_K562_batch10.fastq.gz ChIP-Seq 243.6 MB link
— FUS_ChIP_rep2_HepG2_batch12.fastq.gz ChIP-Seq 755.0 MB link
— FUS_ChIP_rep2_K562_batch10.fastq.gz ChIP-Seq 251.5 MB link
— GTF2F1_ChIP_rep1_HepG2_batch17.fastq.gz ChIP-Seq 348.6 MB link
— GTF2F1_ChIP_rep1_K562_batch3.fastq.gz ChIP-Seq 773.7 MB link
— GTF2F1_ChIP_rep2_HepG2_batch17.fastq.gz ChIP-Seq 394.5 MB link
— GTF2F1_ChIP_rep2_K562_batch3.fastq.gz ChIP-Seq 510.6 MB link
— HNRNPC_ChIP_rep1_HepG2_batch16.fastq.gz ChIP-Seq 473.9 MB link
— HNRNPC_ChIP_rep1_K562_batch4.fastq.gz ChIP-Seq 291.5 MB link
— HNRNPC_ChIP_rep2_HepG2_batch16.fastq.gz ChIP-Seq 488.0 MB link
— HNRNPC_ChIP_rep2_K562_batch4.fastq.gz ChIP-Seq 305.0 MB link
— HNRNPH1_ChIP_rep1_HepG2_batch16.fastq.gz ChIP-Seq 592.6 MB link
— HNRNPH1_ChIP_rep1_K562_batch11.fastq.gz ChIP-Seq 426.4 MB link
— HNRNPH1_ChIP_rep2_HepG2_batch16.fastq.gz ChIP-Seq 551.4 MB link
— HNRNPH1_ChIP_rep2_K562_batch11.fastq.gz ChIP-Seq 458.5 MB link
— HNRNPK_ChIP_rep1_HepG2_batch6.fastq.gz ChIP-Seq 492.7 MB link
— HNRNPK_ChIP_rep1_K562_batch1.fastq.gz ChIP-Seq 887.9 MB link
— HNRNPK_ChIP_rep2_HepG2_batch6.fastq.gz ChIP-Seq 673.9 MB link
— HNRNPK_ChIP_rep2_K562_batch1.fastq.gz ChIP-Seq 965.2 MB link
— HNRNPL_ChIP_rep1_HepG2_batch17.fastq.gz ChIP-Seq 353.1 MB link
— HNRNPL_ChIP_rep1_K562_batch9.fastq.gz ChIP-Seq 359.6 MB link
— HNRNPL_ChIP_rep2_HepG2_batch17.fastq.gz ChIP-Seq 323.6 MB link
— HNRNPL_ChIP_rep2_K562_batch9.fastq.gz ChIP-Seq 392.2 MB link
— HNRNPLL_ChIP_rep1_HepG2_batch16.fastq.gz ChIP-Seq 731.4 MB link
— HNRNPLL_ChIP_rep1_K562_batch9.fastq.gz ChIP-Seq 1003.5 MB link
— HNRNPLL_ChIP_rep2_HepG2_batch16.fastq.gz ChIP-Seq 1.0 GB link
— HNRNPLL_ChIP_rep2_K562_batch9.fastq.gz ChIP-Seq 1.1 GB link
— HNRNPUL1_ChIP_rep1_HepG2_batch17.fastq.gz ChIP-Seq 514.0 MB link
— HNRNPUL1_ChIP_rep1_K562_batch11.fastq.gz ChIP-Seq 701.3 MB link
— HNRNPUL1_ChIP_rep2_HepG2_batch17.fastq.gz ChIP-Seq 577.4 MB link
— HNRNPUL1_ChIP_rep2_K562_batch11.fastq.gz ChIP-Seq 601.6 MB link
— input_Control_rep1_HepG2_batch10.fastq.gz ChIP-Seq 900.5 MB link
— input_Control_rep1_HepG2_batch11.fastq.gz ChIP-Seq 917.1 MB link
— input_Control_rep1_HepG2_batch12.fastq.gz ChIP-Seq 898.9 MB link
— input_Control_rep1_HepG2_batch13.fastq.gz ChIP-Seq 2.3 GB link
— input_Control_rep1_HepG2_batch14.fastq.gz ChIP-Seq 556.8 MB link
— input_Control_rep1_HepG2_batch15.fastq.gz ChIP-Seq 594.9 MB link
— input_Control_rep1_HepG2_batch16.fastq.gz ChIP-Seq 664.2 MB link
— input_Control_rep1_HepG2_batch17.fastq.gz ChIP-Seq 575.4 MB link
— input_Control_rep1_HepG2_batch3.fastq.gz ChIP-Seq 1.3 GB link
— input_Control_rep1_HepG2_batch5.fastq.gz ChIP-Seq 980.9 MB link
— input_Control_rep1_HepG2_batch6.fastq.gz ChIP-Seq 717.9 MB link
— input_Control_rep1_HepG2_batch7.fastq.gz ChIP-Seq 652.0 MB link
— input_Control_rep1_HepG2_batch8.fastq.gz ChIP-Seq 964.1 MB link
— input_Control_rep1_K562_batch10.fastq.gz ChIP-Seq 693.2 MB link
— input_Control_rep1_K562_batch11.fastq.gz ChIP-Seq 522.8 MB link
— input_Control_rep1_K562_batch1.fastq.gz ChIP-Seq 672.2 MB link
— input_Control_rep1_K562_batch2.fastq.gz ChIP-Seq 633.8 MB link
— input_Control_rep1_K562_batch3.fastq.gz ChIP-Seq 591.3 MB link
— input_Control_rep1_K562_batch4.fastq.gz ChIP-Seq 549.3 MB link
— input_Control_rep1_K562_batch5.fastq.gz ChIP-Seq 751.0 MB link
— input_Control_rep1_K562_batch6.fastq.gz ChIP-Seq 706.7 MB link
— input_Control_rep1_K562_batch7.fastq.gz ChIP-Seq 1.8 GB link
— input_Control_rep1_K562_batch8.fastq.gz ChIP-Seq 502.0 MB link
— input_Control_rep1_K562_batch9.fastq.gz ChIP-Seq 640.4 MB link
— input_Control_rep2_HepG2_batch10.fastq.gz ChIP-Seq 874.8 MB link
— input_Control_rep2_HepG2_batch11.fastq.gz ChIP-Seq 868.2 MB link
— input_Control_rep2_HepG2_batch12.fastq.gz ChIP-Seq 1.1 GB link
— input_Control_rep2_HepG2_batch13.fastq.gz ChIP-Seq 2.1 GB link
— input_Control_rep2_HepG2_batch14.fastq.gz ChIP-Seq 721.4 MB link
— input_Control_rep2_HepG2_batch15.fastq.gz ChIP-Seq 691.9 MB link
— input_Control_rep2_HepG2_batch16.fastq.gz ChIP-Seq 608.4 MB link
— input_Control_rep2_HepG2_batch17.fastq.gz ChIP-Seq 635.2 MB link
— input_Control_rep2_HepG2_batch3.fastq.gz ChIP-Seq 1.3 GB link
— input_Control_rep2_HepG2_batch5.fastq.gz ChIP-Seq 1.1 GB link
— input_Control_rep2_HepG2_batch6.fastq.gz ChIP-Seq 696.9 MB link
— input_Control_rep2_HepG2_batch7.fastq.gz ChIP-Seq 837.8 MB link
— input_Control_rep2_HepG2_batch8.fastq.gz ChIP-Seq 739.5 MB link
— input_Control_rep2_K562_batch10.fastq.gz ChIP-Seq 561.3 MB link
— input_Control_rep2_K562_batch11.fastq.gz ChIP-Seq 510.6 MB link
— input_Control_rep2_K562_batch1.fastq.gz ChIP-Seq 614.2 MB link
— input_Control_rep2_K562_batch2.fastq.gz ChIP-Seq 636.8 MB link
— input_Control_rep2_K562_batch3.fastq.gz ChIP-Seq 637.0 MB link
— input_Control_rep2_K562_batch4.fastq.gz ChIP-Seq 542.8 MB link
— input_Control_rep2_K562_batch5.fastq.gz ChIP-Seq 852.2 MB link
— input_Control_rep2_K562_batch6.fastq.gz ChIP-Seq 779.8 MB link
— input_Control_rep2_K562_batch7.fastq.gz ChIP-Seq 2.1 GB link
— input_Control_rep2_K562_batch8.fastq.gz ChIP-Seq 731.1 MB link
— input_Control_rep2_K562_batch9.fastq.gz ChIP-Seq 690.0 MB link
— input-NC4rbm25chip-rep1_R1.fq.gz ChIP-Seq 2.1 GB link
— input-NC4rbm25chip-rep2_R1.fq.gz ChIP-Seq 2.0 GB link
— input-NC4yy1chip-rep1_R1.fq.gz ChIP-Seq 2.2 GB link
— input-NC4yy1chip-rep2_R1.fq.gz ChIP-Seq 1.8 GB link
— input-rbm25kd4yy1chip-rep1_R1.fq.gz ChIP-Seq 1.7 GB link
— input-rbm25kd4yy1chip-rep2_R1.fq.gz ChIP-Seq 1.9 GB link
— input-yy1kd4rbm25chip-rep1_R1.fq.gz ChIP-Seq 2.4 GB link
— input-yy1kd4rbm25chip-rep2_R1.fq.gz ChIP-Seq 2.0 GB link
— NONO_ChIP_rep1_HepG2_batch14.fastq.gz ChIP-Seq 340.8 MB link
— NONO_ChIP_rep1_K562_batch8.fastq.gz ChIP-Seq 340.0 MB link
— NONO_ChIP_rep2_HepG2_batch14.fastq.gz ChIP-Seq 317.2 MB link
— NONO_ChIP_rep2_K562_batch8.fastq.gz ChIP-Seq 290.8 MB link
— PCBP1_ChIP_rep1_HepG2_batch17.fastq.gz ChIP-Seq 381.0 MB link
— PCBP1_ChIP_rep1_K562_batch2.fastq.gz ChIP-Seq 750.1 MB link
— PCBP1_ChIP_rep2_HepG2_batch17.fastq.gz ChIP-Seq 346.6 MB link
— PCBP1_ChIP_rep2_K562_batch2.fastq.gz ChIP-Seq 684.6 MB link
— PCBP2_ChIP_rep1_HepG2_batch7.fastq.gz ChIP-Seq 774.8 MB link
— PCBP2_ChIP_rep1_K562_batch2.fastq.gz ChIP-Seq 773.7 MB link
— PCBP2_ChIP_rep2_HepG2_batch7.fastq.gz ChIP-Seq 839.7 MB link
— PCBP2_ChIP_rep2_K562_batch2.fastq.gz ChIP-Seq 354.7 MB link
— POLR2G_ChIP_rep1_HepG2_batch7.fastq.gz ChIP-Seq 450.4 MB link
— POLR2G_ChIP_rep1_K562_batch10.fastq.gz ChIP-Seq 455.2 MB link
— POLR2G_ChIP_rep2_HepG2_batch7.fastq.gz ChIP-Seq 549.9 MB link
— POLR2G_ChIP_rep2_K562_batch10.fastq.gz ChIP-Seq 419.6 MB link
— PRPF4_ChIP_rep1_HepG2_batch7.fastq.gz ChIP-Seq 611.0 MB link
— PRPF4_ChIP_rep1_K562_batch2.fastq.gz ChIP-Seq 1.6 GB link
— PRPF4_ChIP_rep2_HepG2_batch7.fastq.gz ChIP-Seq 1.0 GB link
— PRPF4_ChIP_rep2_K562_batch2.fastq.gz ChIP-Seq 1.5 GB link
— PTBP1_ChIP_rep1_HepG2_batch3.fastq.gz ChIP-Seq 1022.8 MB link
— PTBP1_ChIP_rep1_K562_batch10.fastq.gz ChIP-Seq 256.4 MB link
— PTBP1_ChIP_rep2_HepG2_batch3.fastq.gz ChIP-Seq 801.5 MB link
— PTBP1_ChIP_rep2_K562_batch10.fastq.gz ChIP-Seq 254.3 MB link
— RBFOX2_ChIP_rep1_HepG2_batch16.fastq.gz ChIP-Seq 293.1 MB link
— RBFOX2_ChIP_rep1_K562_batch10.fastq.gz ChIP-Seq 460.8 MB link
— RBFOX2_ChIP_rep2_HepG2_batch16.fastq.gz ChIP-Seq 271.2 MB link
— RBFOX2_ChIP_rep2_K562_batch10.fastq.gz ChIP-Seq 544.2 MB link
— RBM22_ChIP_rep1_HepG2_batch13.fastq.gz ChIP-Seq 740.3 MB link
— RBM22_ChIP_rep1_K562_batch5.fastq.gz ChIP-Seq 537.6 MB link
— RBM22_ChIP_rep2_HepG2_batch13.fastq.gz ChIP-Seq 820.9 MB link
— RBM22_ChIP_rep2_K562_batch5.fastq.gz ChIP-Seq 533.0 MB link
— RBM25chip-NC.rep1_R1.fq.gz ChIP-Seq 1.7 GB link
— RBM25chip-NC.rep2_R1.fq.gz ChIP-Seq 1.9 GB link
— RBM25_ChIP_rep1_HepG2_batch14.fastq.gz ChIP-Seq 436.2 MB link
— RBM25_ChIP_rep1_K562_batch5.fastq.gz ChIP-Seq 431.0 MB link
— RBM25_ChIP_rep2_HepG2_batch14.fastq.gz ChIP-Seq 575.0 MB link
— RBM25_ChIP_rep2_K562_batch5.fastq.gz ChIP-Seq 433.4 MB link
— RBM25chip-yy1kd.rep1_R1.fq.gz ChIP-Seq 1.3 GB link
— RBM25chip-yy1kd.rep2_R1.fq.gz ChIP-Seq 1.9 GB link
— RBM39_ChIP_rep1_HepG2_batch14.fastq.gz ChIP-Seq 1.1 GB link
— RBM39_ChIP_rep1_K562_batch11.fastq.gz ChIP-Seq 467.0 MB link
— RBM39_ChIP_rep2_HepG2_batch14.fastq.gz ChIP-Seq 1.9 GB link
— RBM39_ChIP_rep2_K562_batch11.fastq.gz ChIP-Seq 441.6 MB link
— SAFB2_ChIP_rep1_HepG2_batch10.fastq.gz ChIP-Seq 430.3 MB link
— SAFB2_ChIP_rep1_K562_batch5.fastq.gz ChIP-Seq 230.6 MB link
— SAFB2_ChIP_rep2_HepG2_batch10.fastq.gz ChIP-Seq 460.8 MB link
— SAFB2_ChIP_rep2_K562_batch5.fastq.gz ChIP-Seq 306.9 MB link
— SAFB_ChIP_rep1_K562_batch3.fastq.gz ChIP-Seq 339.1 MB link
— SAFB_ChIP_rep2_K562_batch3.fastq.gz ChIP-Seq 303.9 MB link
— SFPQ_ChIP_rep1_HepG2_batch17.fastq.gz ChIP-Seq 358.3 MB link
— SFPQ_ChIP_rep1_K562_batch9.fastq.gz ChIP-Seq 489.3 MB link
— SFPQ_ChIP_rep2_HepG2_batch17.fastq.gz ChIP-Seq 366.7 MB link
— SFPQ_ChIP_rep2_K562_batch9.fastq.gz ChIP-Seq 417.6 MB link
— SNRNP70_ChIP_rep1_HepG2_batch17.fastq.gz ChIP-Seq 443.9 MB link
— SNRNP70_ChIP_rep1_K562_batch11.fastq.gz ChIP-Seq 388.8 MB link
— SNRNP70_ChIP_rep2_HepG2_batch17.fastq.gz ChIP-Seq 526.4 MB link
— SNRNP70_ChIP_rep2_K562_batch11.fastq.gz ChIP-Seq 403.2 MB link
— SRR7868864 ChIP-Seq 514.0 MB link
— SRR7868889 ChIP-Seq 1.9 GB link
— SRR7868945 ChIP-Seq 241.8 MB link
— SRR7868946 ChIP-Seq 458.6 MB link
— SRR7868956 ChIP-Seq 359.6 MB link
— SRR7868964 ChIP-Seq 750.1 MB link
— SRR7868965 ChIP-Seq 684.6 MB link
— SRR7868976 ChIP-Seq 286.4 MB link
— SRR7868977 ChIP-Seq 385.2 MB link
— SRR7868993 ChIP-Seq 290.8 MB link
— SRR7868996 ChIP-Seq 455.2 MB link
— SRR7868998 ChIP-Seq 489.3 MB link
— SRR7869007 ChIP-Seq 614.2 MB link
— SRSF1_ChIP_rep1_HepG2_batch17.fastq.gz ChIP-Seq 457.4 MB link
— SRSF1_ChIP_rep1_K562_batch11.fastq.gz ChIP-Seq 417.5 MB link
— SRSF1_ChIP_rep2_HepG2_batch17.fastq.gz ChIP-Seq 466.0 MB link
— SRSF1_ChIP_rep2_K562_batch11.fastq.gz ChIP-Seq 452.5 MB link
— SRSF3_ChIP_rep1_HepG2_batch3.fastq.gz ChIP-Seq 605.2 MB link
— SRSF3_ChIP_rep1_K562_batch4.fastq.gz ChIP-Seq 338.6 MB link
— SRSF3_ChIP_rep2_HepG2_batch3.fastq.gz ChIP-Seq 630.6 MB link
— SRSF3_ChIP_rep2_K562_batch4.fastq.gz ChIP-Seq 496.2 MB link
— SRSF4_ChIP_rep1_HepG2_batch5.fastq.gz ChIP-Seq 868.7 MB link
— SRSF4_ChIP_rep1_K562_batch6.fastq.gz ChIP-Seq 360.1 MB link
— SRSF4_ChIP_rep2_HepG2_batch5.fastq.gz ChIP-Seq 1005.1 MB link
— SRSF4_ChIP_rep2_K562_batch6.fastq.gz ChIP-Seq 398.1 MB link
— SRSF7_ChIP_rep1_HepG2_batch5.fastq.gz ChIP-Seq 480.6 MB link
— SRSF7_ChIP_rep1_K562_batch4.fastq.gz ChIP-Seq 323.7 MB link
— SRSF7_ChIP_rep2_HepG2_batch5.fastq.gz ChIP-Seq 528.9 MB link
— SRSF7_ChIP_rep2_K562_batch4.fastq.gz ChIP-Seq 280.9 MB link
— SRSF9_ChIP_rep1_HepG2_batch5.fastq.gz ChIP-Seq 842.9 MB link
— SRSF9_ChIP_rep1_K562_batch4.fastq.gz ChIP-Seq 271.1 MB link
— SRSF9_ChIP_rep2_HepG2_batch5.fastq.gz ChIP-Seq 974.6 MB link
— SRSF9_ChIP_rep2_K562_batch4.fastq.gz ChIP-Seq 241.8 MB link
— TAF15_ChIP_rep1_HepG2_batch12.fastq.gz ChIP-Seq 737.8 MB link
— TAF15_ChIP_rep1_K562_batch9.fastq.gz ChIP-Seq 334.8 MB link
— TAF15_ChIP_rep2_HepG2_batch12.fastq.gz ChIP-Seq 1.3 GB link
— TAF15_ChIP_rep2_K562_batch9.fastq.gz ChIP-Seq 419.1 MB link
— TARDBP_ChIP_rep1_HepG2_batch15.fastq.gz ChIP-Seq 716.2 MB link
— TARDBP_ChIP_rep1_K562_batch10.fastq.gz ChIP-Seq 569.9 MB link
— TARDBP_ChIP_rep2_HepG2_batch15.fastq.gz ChIP-Seq 672.2 MB link
— TARDBP_ChIP_rep2_K562_batch10.fastq.gz ChIP-Seq 594.6 MB link
— U2AF1_ChIP_rep1_HepG2_batch17.fastq.gz ChIP-Seq 480.9 MB link
— U2AF1_ChIP_rep1_K562_batch11.fastq.gz ChIP-Seq 458.6 MB link
— U2AF1_ChIP_rep2_HepG2_batch17.fastq.gz ChIP-Seq 389.7 MB link
— U2AF1_ChIP_rep2_K562_batch11.fastq.gz ChIP-Seq 500.3 MB link
— U2AF2_ChIP_rep1_HepG2_batch17.fastq.gz ChIP-Seq 406.8 MB link
— U2AF2_ChIP_rep1_K562_batch11.fastq.gz ChIP-Seq 305.3 MB link
— U2AF2_ChIP_rep2_HepG2_batch17.fastq.gz ChIP-Seq 447.9 MB link
— U2AF2_ChIP_rep2_K562_batch11.fastq.gz ChIP-Seq 351.0 MB link
— XRCC5_ChIP_rep1_HepG2_batch16.fastq.gz ChIP-Seq 496.2 MB link
— XRCC5_ChIP_rep1_K562_batch7.fastq.gz ChIP-Seq 805.3 MB link
— XRCC5_ChIP_rep2_HepG2_batch16.fastq.gz ChIP-Seq 573.1 MB link
— XRCC5_ChIP_rep2_K562_batch7.fastq.gz ChIP-Seq 668.0 MB link
— YY1chip-NC.rep1_R1.fq.gz ChIP-Seq 885.2 MB link
— YY1chip-NC.rep2_R1.fq.gz ChIP-Seq 1.1 GB link
— YY1chip-rbm25kd.rep1_R1.fq.gz ChIP-Seq 823.8 MB link
— YY1chip-rbm25kd.rep2_R1.fq.gz ChIP-Seq 1.4 GB link