Pervasive Chromatin-RNA Binding Protein Interactions Enable RNA-Based Regulation of Transcription.
Rui Xiao, Jia-Yu Chen, Zhengyu Liang, Daji Luo, Geng Chen, Zhi John Lu, Yang Chen, Bing Zhou, Hairi Li, Xian Du, Yang Yang, Mingkui San, Xintao Wei, Wen Liu, Eric Lécuyer, Brenton R Graveley, Gene W Yeo, Christopher B Burge, Michael Q Zhang, Yu Zhou, Xiang-Dong Fu
Cell · 2019 · Vol. 178 (1) · pp. 107-121.e18
Abstract
Increasing evidence suggests that transcriptional control and chromatin activities at large involve regulatory RNAs, which likely enlist specific RNA-binding proteins (RBPs). Although multiple RBPs have been implicated in transcription control, it has remained unclear how extensively RBPs directly act on chromatin. We embarked on a large-scale RBP ChIP-seq analysis, revealing widespread RBP presence in active chromatin regions in the human genome. Like transcription factors (TFs), RBPs also show strong preference for hotspots in the genome, particularly gene promoters, where their association is frequently linked to transcriptional output. Unsupervised clustering reveals extensive co-association between TFs and RBPs, as exemplified by YY1, a known RNA-dependent TF, and RBM25, an RBP involved in splicing regulation. Remarkably, RBM25 depletion attenuates all YY1-dependent activities, including chromatin binding, DNA looping, and transcription. We propose that various RBPs may enhance network interaction through harnessing regulatory RNAs to control transcription.
Linked datasets 4
Pervasive Chromatin-RNA Binding Protein Interactions Enable RNA-based Regulation of Transcription [HiC-Seq]
Homo sapiens
8 data files
| File | Type | Size |
|---|---|---|
| Control_BLHiC_HepG2_rep1_R1.fq.gz | OTHER | 10.4 GB |
| Control_BLHiC_HepG2_rep2_R1.fq.gz | OTHER | 10.2 GB |
| RBM25.KD_BLHiC_HepG2_rep1_R1.fq.gz | OTHER | 12.0 GB |
| RBM25.KD_BLHiC_HepG2_rep2_R1.fq.gz | OTHER | 9.6 GB |
| SRR7868823_GSM3391789 | OTHER | 10.4 GB |
| SRR7868824_GSM3391790 | OTHER | 10.2 GB |
| SRR7868825_GSM3391791 | OTHER | 12.0 GB |
| SRR7868826_GSM3391792 | OTHER | 9.6 GB |
Pervasive Chromatin-RNA Binding Protein Interactions Enable RNA-based Regulation of Transcription
Homo sapiens
Pervasive Chromatin-RNA Binding Protein Interactions Enable RNA-based Regulation of Transcription [GRO-Seq]
Homo sapiens
83 data files
| File | Type | Size |
|---|---|---|
| AGO1.KD_GRO_rep1_HepG2_batch1.fastq.gz | OTHER | 338.5 MB |
| AGO1.KD_GRO_rep2_HepG2_batch1.fastq.gz | OTHER | 398.8 MB |
| AGO2.KD_GRO_rep1_HepG2_batch1.fastq.gz | OTHER | 316.8 MB |
| AGO2.KD_GRO_rep2_HepG2_batch1.fastq.gz | OTHER | 367.4 MB |
| Control_GRO_rep1_HepG2_batch1.fastq.gz | OTHER | 321.8 MB |
| Control_GRO_rep1_HepG2_batch2.fastq.gz | OTHER | 254.2 MB |
| Control_GRO_rep1_HepG2_batch3.fastq.gz | OTHER | 761.9 MB |
| Control_GRO_rep2_HepG2_batch1.fastq.gz | OTHER | 426.4 MB |
| Control_GRO_rep2_HepG2_batch2.fastq.gz | OTHER | 269.1 MB |
| Control_GRO_rep2_HepG2_batch3.fastq.gz | OTHER | 763.2 MB |
| HNRNPH1.KD_GRO_rep1_HepG2_batch2.fastq.gz | OTHER | 245.8 MB |
| HNRNPH1.KD_GRO_rep2_HepG2_batch2.fastq.gz | OTHER | 260.2 MB |
| HNRNPK.KD_GRO_rep1_HepG2_batch2.fastq.gz | OTHER | 254.5 MB |
| HNRNPK.KD_GRO_rep2_HepG2_batch2.fastq.gz | OTHER | 230.1 MB |
| HNRNPL.KD_GRO_rep1_HepG2_batch1.fastq.gz | OTHER | 329.8 MB |
| HNRNPL.KD_GRO_rep2_HepG2_batch1.fastq.gz | OTHER | 374.7 MB |
| HNRNPLL.KD_GRO_rep1_HepG2_batch2.fastq.gz | OTHER | 257.3 MB |
| HNRNPLL.KD_GRO_rep2_HepG2_batch2.fastq.gz | OTHER | 285.0 MB |
| PCBP2.KD_GRO_rep1_HepG2_batch2.fastq.gz | OTHER | 254.4 MB |
| PCBP2.KD_GRO_rep2_HepG2_batch2.fastq.gz | OTHER | 268.5 MB |
| PTBP1.KD_GRO_rep1_HepG2_batch2.fastq.gz | OTHER | 245.6 MB |
| PTBP1.KD_GRO_rep2_HepG2_batch2.fastq.gz | OTHER | 270.8 MB |
| RBM22.KD_GRO_rep1_HepG2_batch2.fastq.gz | OTHER | 264.3 MB |
| RBM22.KD_GRO_rep2_HepG2_batch2.fastq.gz | OTHER | 288.9 MB |
| RBM25.KD_GRO_rep1_HepG2_batch2.fastq.gz | OTHER | 225.0 MB |
| RBM25.KD_GRO_rep1_HepG2_batch3.fastq.gz | OTHER | 871.8 MB |
| RBM25.KD_GRO_rep2_HepG2_batch2.fastq.gz | OTHER | 256.0 MB |
| RBM25.KD_GRO_rep2_HepG2_batch3.fastq.gz | OTHER | 835.0 MB |
| SRR7868785_GSM3393668 | OTHER | 321.0 MB |
| SRR7868786_GSM3393669 | OTHER | 426.0 MB |
| SRR7868787_GSM3393670 | OTHER | 338.0 MB |
| SRR7868788_GSM3393671 | OTHER | 398.0 MB |
| SRR7868789_GSM3393672 | OTHER | 316.0 MB |
| SRR7868790_GSM3393673 | OTHER | 367.0 MB |
| SRR7868791_GSM3393674 | OTHER | 329.0 MB |
| SRR7868792 | OTHER | 374.7 MB |
| SRR7868792_GSM3393675 | OTHER | 374.0 MB |
| SRR7868793_GSM3393676 | OTHER | 309.0 MB |
| SRR7868794_GSM3393677 | OTHER | 407.0 MB |
| SRR7868795 | OTHER | 321.8 MB |
| SRR7868795_GSM3393678 | OTHER | 321.0 MB |
| SRR7868796_GSM3393679 | OTHER | 411.0 MB |
| SRR7868797_GSM3393680 | OTHER | 314.0 MB |
| SRR7868798_GSM3393681 | OTHER | 397.0 MB |
| SRR7868799_GSM3393682 | OTHER | 254.0 MB |
| SRR7868800_GSM3393683 | OTHER | 269.0 MB |
| SRR7868801 | OTHER | 245.8 MB |
| SRR7868801_GSM3393684 | OTHER | 245.0 MB |
| SRR7868802_GSM3393685 | OTHER | 260.0 MB |
| SRR7868803_GSM3393686 | OTHER | 254.0 MB |
| SRR7868804 | OTHER | 230.1 MB |
| SRR7868804_GSM3393687 | OTHER | 230.0 MB |
| SRR7868805_GSM3393688 | OTHER | 257.0 MB |
| SRR7868806_GSM3393689 | OTHER | 284.0 MB |
| SRR7868807_GSM3393690 | OTHER | 254.0 MB |
| SRR7868808_GSM3393691 | OTHER | 268.0 MB |
| SRR7868809 | OTHER | 245.6 MB |
| SRR7868809_GSM3393692 | OTHER | 245.0 MB |
| SRR7868810_GSM3393693 | OTHER | 270.0 MB |
| SRR7868811_GSM3393694 | OTHER | 264.0 MB |
| SRR7868812_GSM3393695 | OTHER | 288.0 MB |
| SRR7868813 | OTHER | 225.0 MB |
| SRR7868813_GSM3393696 | OTHER | 225.0 MB |
| SRR7868814_GSM3393697 | OTHER | 256.0 MB |
| SRR7868815_GSM3393698 | OTHER | 274.0 MB |
| SRR7868816_GSM3393699 | OTHER | 270.0 MB |
| SRR7868817_GSM3393700 | OTHER | 761.0 MB |
| SRR7868818_GSM3393701 | OTHER | 763.0 MB |
| SRR7868819_GSM3393702 | OTHER | 881.0 MB |
| SRR7868820_GSM3393703 | OTHER | 686.0 MB |
| SRR7868821_GSM3393704 | OTHER | 871.0 MB |
| SRR7868822_GSM3393705 | OTHER | 835.0 MB |
| SRSF4.KD_GRO_rep1_HepG2_batch1.fastq.gz | OTHER | 309.2 MB |
| SRSF4.KD_GRO_rep2_HepG2_batch1.fastq.gz | OTHER | 407.1 MB |
| U2AF1.KD_GRO_rep1_HepG2_batch1.fastq.gz | OTHER | 321.8 MB |
| U2AF1.KD_GRO_rep2_HepG2_batch1.fastq.gz | OTHER | 411.6 MB |
| U2AF2.KD_GRO_rep1_HepG2_batch1.fastq.gz | OTHER | 314.2 MB |
| U2AF2.KD_GRO_rep2_HepG2_batch1.fastq.gz | OTHER | 397.6 MB |
| U2AF2.KD_GRO_rep2_HepG2_batch1.fastq.gz | OTHER | 397.6 MB |
| XRCC5.KD_GRO_rep1_HepG2_batch2.fastq.gz | OTHER | 274.4 MB |
| XRCC5.KD_GRO_rep2_HepG2_batch2.fastq.gz | OTHER | 270.5 MB |
| YY1.KD_GRO_rep1_HepG2_batch3.fastq.gz | OTHER | 881.2 MB |
| YY1.KD_GRO_rep2_HepG2_batch3.fastq.gz | OTHER | 687.0 MB |
Pervasive Chromatin-RNA Binding Protein Interactions Enable RNA-based Regulation of Transcription [ChIP-Seq]
Homo sapiens
421 data files
| File | Type | Size |
|---|---|---|
| AGO1_ChIP_rep1_HepG2_batch16.fastq.gz | ChIP-Seq | 847.7 MB |
| AGO1_ChIP_rep1_K562_batch10.fastq.gz | ChIP-Seq | 570.4 MB |
| AGO1_ChIP_rep2_HepG2_batch16.fastq.gz | ChIP-Seq | 1.0 GB |
| AGO1_ChIP_rep2_K562_batch10.fastq.gz | ChIP-Seq | 532.4 MB |
| AGO2_ChIP_rep1_HepG2_batch16.fastq.gz | ChIP-Seq | 463.9 MB |
| AGO2_ChIP_rep2_HepG2_batch16.fastq.gz | ChIP-Seq | 513.6 MB |
| CCAR2_ChIP_rep1_HepG2_batch11.fastq.gz | ChIP-Seq | 1.1 GB |
| CCAR2_ChIP_rep1_K562_batch11.fastq.gz | ChIP-Seq | 344.2 MB |
| CCAR2_ChIP_rep2_HepG2_batch11.fastq.gz | ChIP-Seq | 1.1 GB |
| CCAR2_ChIP_rep2_K562_batch11.fastq.gz | ChIP-Seq | 338.5 MB |
| FIP1L1_ChIP_rep1_HepG2_batch8.fastq.gz | ChIP-Seq | 385.4 MB |
| FIP1L1_ChIP_rep1_K562_batch6.fastq.gz | ChIP-Seq | 286.4 MB |
| FIP1L1_ChIP_rep2_HepG2_batch8.fastq.gz | ChIP-Seq | 376.7 MB |
| FIP1L1_ChIP_rep2_K562_batch6.fastq.gz | ChIP-Seq | 385.2 MB |
| FUS_ChIP_rep1_HepG2_batch12.fastq.gz | ChIP-Seq | 465.6 MB |
| FUS_ChIP_rep1_K562_batch10.fastq.gz | ChIP-Seq | 243.6 MB |
| FUS_ChIP_rep2_HepG2_batch12.fastq.gz | ChIP-Seq | 755.0 MB |
| FUS_ChIP_rep2_K562_batch10.fastq.gz | ChIP-Seq | 251.5 MB |
| GTF2F1_ChIP_rep1_HepG2_batch17.fastq.gz | ChIP-Seq | 348.6 MB |
| GTF2F1_ChIP_rep1_K562_batch3.fastq.gz | ChIP-Seq | 773.7 MB |
| GTF2F1_ChIP_rep2_HepG2_batch17.fastq.gz | ChIP-Seq | 394.5 MB |
| GTF2F1_ChIP_rep2_K562_batch3.fastq.gz | ChIP-Seq | 510.6 MB |
| HNRNPC_ChIP_rep1_HepG2_batch16.fastq.gz | ChIP-Seq | 473.9 MB |
| HNRNPC_ChIP_rep1_K562_batch4.fastq.gz | ChIP-Seq | 291.5 MB |
| HNRNPC_ChIP_rep2_HepG2_batch16.fastq.gz | ChIP-Seq | 488.0 MB |
| HNRNPC_ChIP_rep2_K562_batch4.fastq.gz | ChIP-Seq | 305.0 MB |
| HNRNPH1_ChIP_rep1_HepG2_batch16.fastq.gz | ChIP-Seq | 592.6 MB |
| HNRNPH1_ChIP_rep1_K562_batch11.fastq.gz | ChIP-Seq | 426.4 MB |
| HNRNPH1_ChIP_rep2_HepG2_batch16.fastq.gz | ChIP-Seq | 551.4 MB |
| HNRNPH1_ChIP_rep2_K562_batch11.fastq.gz | ChIP-Seq | 458.5 MB |
| HNRNPK_ChIP_rep1_HepG2_batch6.fastq.gz | ChIP-Seq | 492.7 MB |
| HNRNPK_ChIP_rep1_K562_batch1.fastq.gz | ChIP-Seq | 887.9 MB |
| HNRNPK_ChIP_rep2_HepG2_batch6.fastq.gz | ChIP-Seq | 673.9 MB |
| HNRNPK_ChIP_rep2_K562_batch1.fastq.gz | ChIP-Seq | 965.2 MB |
| HNRNPL_ChIP_rep1_HepG2_batch17.fastq.gz | ChIP-Seq | 353.1 MB |
| HNRNPL_ChIP_rep1_K562_batch9.fastq.gz | ChIP-Seq | 359.6 MB |
| HNRNPL_ChIP_rep2_HepG2_batch17.fastq.gz | ChIP-Seq | 323.6 MB |
| HNRNPL_ChIP_rep2_K562_batch9.fastq.gz | ChIP-Seq | 392.2 MB |
| HNRNPLL_ChIP_rep1_HepG2_batch16.fastq.gz | ChIP-Seq | 731.4 MB |
| HNRNPLL_ChIP_rep1_K562_batch9.fastq.gz | ChIP-Seq | 1003.5 MB |
| HNRNPLL_ChIP_rep2_HepG2_batch16.fastq.gz | ChIP-Seq | 1.0 GB |
| HNRNPLL_ChIP_rep2_K562_batch9.fastq.gz | ChIP-Seq | 1.1 GB |
| HNRNPUL1_ChIP_rep1_HepG2_batch17.fastq.gz | ChIP-Seq | 514.0 MB |
| HNRNPUL1_ChIP_rep1_K562_batch11.fastq.gz | ChIP-Seq | 701.3 MB |
| HNRNPUL1_ChIP_rep2_HepG2_batch17.fastq.gz | ChIP-Seq | 577.4 MB |
| HNRNPUL1_ChIP_rep2_K562_batch11.fastq.gz | ChIP-Seq | 601.6 MB |
| input_Control_rep1_HepG2_batch10.fastq.gz | ChIP-Seq | 900.5 MB |
| input_Control_rep1_HepG2_batch11.fastq.gz | ChIP-Seq | 917.1 MB |
| input_Control_rep1_HepG2_batch12.fastq.gz | ChIP-Seq | 898.9 MB |
| input_Control_rep1_HepG2_batch13.fastq.gz | ChIP-Seq | 2.3 GB |
| input_Control_rep1_HepG2_batch14.fastq.gz | ChIP-Seq | 556.8 MB |
| input_Control_rep1_HepG2_batch15.fastq.gz | ChIP-Seq | 594.9 MB |
| input_Control_rep1_HepG2_batch16.fastq.gz | ChIP-Seq | 664.2 MB |
| input_Control_rep1_HepG2_batch17.fastq.gz | ChIP-Seq | 575.4 MB |
| input_Control_rep1_HepG2_batch3.fastq.gz | ChIP-Seq | 1.3 GB |
| input_Control_rep1_HepG2_batch5.fastq.gz | ChIP-Seq | 980.9 MB |
| input_Control_rep1_HepG2_batch6.fastq.gz | ChIP-Seq | 717.9 MB |
| input_Control_rep1_HepG2_batch7.fastq.gz | ChIP-Seq | 652.0 MB |
| input_Control_rep1_HepG2_batch8.fastq.gz | ChIP-Seq | 964.1 MB |
| input_Control_rep1_K562_batch10.fastq.gz | ChIP-Seq | 693.2 MB |
| input_Control_rep1_K562_batch11.fastq.gz | ChIP-Seq | 522.8 MB |
| input_Control_rep1_K562_batch1.fastq.gz | ChIP-Seq | 672.2 MB |
| input_Control_rep1_K562_batch2.fastq.gz | ChIP-Seq | 633.8 MB |
| input_Control_rep1_K562_batch3.fastq.gz | ChIP-Seq | 591.3 MB |
| input_Control_rep1_K562_batch4.fastq.gz | ChIP-Seq | 549.3 MB |
| input_Control_rep1_K562_batch5.fastq.gz | ChIP-Seq | 751.0 MB |
| input_Control_rep1_K562_batch6.fastq.gz | ChIP-Seq | 706.7 MB |
| input_Control_rep1_K562_batch7.fastq.gz | ChIP-Seq | 1.8 GB |
| input_Control_rep1_K562_batch8.fastq.gz | ChIP-Seq | 502.0 MB |
| input_Control_rep1_K562_batch9.fastq.gz | ChIP-Seq | 640.4 MB |
| input_Control_rep2_HepG2_batch10.fastq.gz | ChIP-Seq | 874.8 MB |
| input_Control_rep2_HepG2_batch11.fastq.gz | ChIP-Seq | 868.2 MB |
| input_Control_rep2_HepG2_batch12.fastq.gz | ChIP-Seq | 1.1 GB |
| input_Control_rep2_HepG2_batch13.fastq.gz | ChIP-Seq | 2.1 GB |
| input_Control_rep2_HepG2_batch14.fastq.gz | ChIP-Seq | 721.4 MB |
| input_Control_rep2_HepG2_batch15.fastq.gz | ChIP-Seq | 691.9 MB |
| input_Control_rep2_HepG2_batch16.fastq.gz | ChIP-Seq | 608.4 MB |
| input_Control_rep2_HepG2_batch17.fastq.gz | ChIP-Seq | 635.2 MB |
| input_Control_rep2_HepG2_batch3.fastq.gz | ChIP-Seq | 1.3 GB |
| input_Control_rep2_HepG2_batch5.fastq.gz | ChIP-Seq | 1.1 GB |
| input_Control_rep2_HepG2_batch6.fastq.gz | ChIP-Seq | 696.9 MB |
| input_Control_rep2_HepG2_batch7.fastq.gz | ChIP-Seq | 837.8 MB |
| input_Control_rep2_HepG2_batch8.fastq.gz | ChIP-Seq | 739.5 MB |
| input_Control_rep2_K562_batch10.fastq.gz | ChIP-Seq | 561.3 MB |
| input_Control_rep2_K562_batch11.fastq.gz | ChIP-Seq | 510.6 MB |
| input_Control_rep2_K562_batch1.fastq.gz | ChIP-Seq | 614.2 MB |
| input_Control_rep2_K562_batch2.fastq.gz | ChIP-Seq | 636.8 MB |
| input_Control_rep2_K562_batch3.fastq.gz | ChIP-Seq | 637.0 MB |
| input_Control_rep2_K562_batch4.fastq.gz | ChIP-Seq | 542.8 MB |
| input_Control_rep2_K562_batch5.fastq.gz | ChIP-Seq | 852.2 MB |
| input_Control_rep2_K562_batch6.fastq.gz | ChIP-Seq | 779.8 MB |
| input_Control_rep2_K562_batch7.fastq.gz | ChIP-Seq | 2.1 GB |
| input_Control_rep2_K562_batch8.fastq.gz | ChIP-Seq | 731.1 MB |
| input_Control_rep2_K562_batch9.fastq.gz | ChIP-Seq | 690.0 MB |
| input-NC4rbm25chip-rep1_R1.fq.gz | ChIP-Seq | 2.1 GB |
| input-NC4rbm25chip-rep2_R1.fq.gz | ChIP-Seq | 2.0 GB |
| input-NC4yy1chip-rep1_R1.fq.gz | ChIP-Seq | 2.2 GB |
| input-NC4yy1chip-rep2_R1.fq.gz | ChIP-Seq | 1.8 GB |
| input-rbm25kd4yy1chip-rep1_R1.fq.gz | ChIP-Seq | 1.7 GB |
| input-rbm25kd4yy1chip-rep2_R1.fq.gz | ChIP-Seq | 1.9 GB |
| input-yy1kd4rbm25chip-rep1_R1.fq.gz | ChIP-Seq | 2.4 GB |
| input-yy1kd4rbm25chip-rep2_R1.fq.gz | ChIP-Seq | 2.0 GB |
| NONO_ChIP_rep1_HepG2_batch14.fastq.gz | ChIP-Seq | 340.8 MB |
| NONO_ChIP_rep1_K562_batch8.fastq.gz | ChIP-Seq | 340.0 MB |
| NONO_ChIP_rep2_HepG2_batch14.fastq.gz | ChIP-Seq | 317.2 MB |
| NONO_ChIP_rep2_K562_batch8.fastq.gz | ChIP-Seq | 290.8 MB |
| PCBP1_ChIP_rep1_HepG2_batch17.fastq.gz | ChIP-Seq | 381.0 MB |
| PCBP1_ChIP_rep1_K562_batch2.fastq.gz | ChIP-Seq | 750.1 MB |
| PCBP1_ChIP_rep2_HepG2_batch17.fastq.gz | ChIP-Seq | 346.6 MB |
| PCBP1_ChIP_rep2_K562_batch2.fastq.gz | ChIP-Seq | 684.6 MB |
| PCBP2_ChIP_rep1_HepG2_batch7.fastq.gz | ChIP-Seq | 774.8 MB |
| PCBP2_ChIP_rep1_K562_batch2.fastq.gz | ChIP-Seq | 773.7 MB |
| PCBP2_ChIP_rep2_HepG2_batch7.fastq.gz | ChIP-Seq | 839.7 MB |
| PCBP2_ChIP_rep2_K562_batch2.fastq.gz | ChIP-Seq | 354.7 MB |
| POLR2G_ChIP_rep1_HepG2_batch7.fastq.gz | ChIP-Seq | 450.4 MB |
| POLR2G_ChIP_rep1_K562_batch10.fastq.gz | ChIP-Seq | 455.2 MB |
| POLR2G_ChIP_rep2_HepG2_batch7.fastq.gz | ChIP-Seq | 549.9 MB |
| POLR2G_ChIP_rep2_K562_batch10.fastq.gz | ChIP-Seq | 419.6 MB |
| PRPF4_ChIP_rep1_HepG2_batch7.fastq.gz | ChIP-Seq | 611.0 MB |
| PRPF4_ChIP_rep1_K562_batch2.fastq.gz | ChIP-Seq | 1.6 GB |
| PRPF4_ChIP_rep2_HepG2_batch7.fastq.gz | ChIP-Seq | 1.0 GB |
| PRPF4_ChIP_rep2_K562_batch2.fastq.gz | ChIP-Seq | 1.5 GB |
| PTBP1_ChIP_rep1_HepG2_batch3.fastq.gz | ChIP-Seq | 1022.8 MB |
| PTBP1_ChIP_rep1_K562_batch10.fastq.gz | ChIP-Seq | 256.4 MB |
| PTBP1_ChIP_rep2_HepG2_batch3.fastq.gz | ChIP-Seq | 801.5 MB |
| PTBP1_ChIP_rep2_K562_batch10.fastq.gz | ChIP-Seq | 254.3 MB |
| RBFOX2_ChIP_rep1_HepG2_batch16.fastq.gz | ChIP-Seq | 293.1 MB |
| RBFOX2_ChIP_rep1_K562_batch10.fastq.gz | ChIP-Seq | 460.8 MB |
| RBFOX2_ChIP_rep2_HepG2_batch16.fastq.gz | ChIP-Seq | 271.2 MB |
| RBFOX2_ChIP_rep2_K562_batch10.fastq.gz | ChIP-Seq | 544.2 MB |
| RBM22_ChIP_rep1_HepG2_batch13.fastq.gz | ChIP-Seq | 740.3 MB |
| RBM22_ChIP_rep1_K562_batch5.fastq.gz | ChIP-Seq | 537.6 MB |
| RBM22_ChIP_rep2_HepG2_batch13.fastq.gz | ChIP-Seq | 820.9 MB |
| RBM22_ChIP_rep2_K562_batch5.fastq.gz | ChIP-Seq | 533.0 MB |
| RBM25chip-NC.rep1_R1.fq.gz | ChIP-Seq | 1.7 GB |
| RBM25chip-NC.rep2_R1.fq.gz | ChIP-Seq | 1.9 GB |
| RBM25_ChIP_rep1_HepG2_batch14.fastq.gz | ChIP-Seq | 436.2 MB |
| RBM25_ChIP_rep1_K562_batch5.fastq.gz | ChIP-Seq | 431.0 MB |
| RBM25_ChIP_rep2_HepG2_batch14.fastq.gz | ChIP-Seq | 575.0 MB |
| RBM25_ChIP_rep2_K562_batch5.fastq.gz | ChIP-Seq | 433.4 MB |
| RBM25chip-yy1kd.rep1_R1.fq.gz | ChIP-Seq | 1.3 GB |
| RBM25chip-yy1kd.rep2_R1.fq.gz | ChIP-Seq | 1.9 GB |
| RBM39_ChIP_rep1_HepG2_batch14.fastq.gz | ChIP-Seq | 1.1 GB |
| RBM39_ChIP_rep1_K562_batch11.fastq.gz | ChIP-Seq | 467.0 MB |
| RBM39_ChIP_rep2_HepG2_batch14.fastq.gz | ChIP-Seq | 1.9 GB |
| RBM39_ChIP_rep2_K562_batch11.fastq.gz | ChIP-Seq | 441.6 MB |
| SAFB2_ChIP_rep1_HepG2_batch10.fastq.gz | ChIP-Seq | 430.3 MB |
| SAFB2_ChIP_rep1_K562_batch5.fastq.gz | ChIP-Seq | 230.6 MB |
| SAFB2_ChIP_rep2_HepG2_batch10.fastq.gz | ChIP-Seq | 460.8 MB |
| SAFB2_ChIP_rep2_K562_batch5.fastq.gz | ChIP-Seq | 306.9 MB |
| SAFB_ChIP_rep1_K562_batch3.fastq.gz | ChIP-Seq | 339.1 MB |
| SAFB_ChIP_rep2_K562_batch3.fastq.gz | ChIP-Seq | 303.9 MB |
| SFPQ_ChIP_rep1_HepG2_batch17.fastq.gz | ChIP-Seq | 358.3 MB |
| SFPQ_ChIP_rep1_K562_batch9.fastq.gz | ChIP-Seq | 489.3 MB |
| SFPQ_ChIP_rep2_HepG2_batch17.fastq.gz | ChIP-Seq | 366.7 MB |
| SFPQ_ChIP_rep2_K562_batch9.fastq.gz | ChIP-Seq | 417.6 MB |
| SNRNP70_ChIP_rep1_HepG2_batch17.fastq.gz | ChIP-Seq | 443.9 MB |
| SNRNP70_ChIP_rep1_K562_batch11.fastq.gz | ChIP-Seq | 388.8 MB |
| SNRNP70_ChIP_rep2_HepG2_batch17.fastq.gz | ChIP-Seq | 526.4 MB |
| SNRNP70_ChIP_rep2_K562_batch11.fastq.gz | ChIP-Seq | 403.2 MB |
| SRR7868840_GSM3393527 | ChIP-Seq | 457.0 MB |
| SRR7868841_GSM3393527 | ChIP-Seq | 466.0 MB |
| SRR7868842_GSM3393528 | ChIP-Seq | 605.0 MB |
| SRR7868843_GSM3393528 | ChIP-Seq | 630.0 MB |
| SRR7868844_GSM3393529 | ChIP-Seq | 868.0 MB |
| SRR7868845_GSM3393529 | ChIP-Seq | 1005.0 MB |
| SRR7868846_GSM3393530 | ChIP-Seq | 480.0 MB |
| SRR7868847_GSM3393530 | ChIP-Seq | 528.0 MB |
| SRR7868848_GSM3393531 | ChIP-Seq | 842.0 MB |
| SRR7868849_GSM3393531 | ChIP-Seq | 974.0 MB |
| SRR7868850_GSM3393532 | ChIP-Seq | 480.0 MB |
| SRR7868851_GSM3393532 | ChIP-Seq | 389.0 MB |
| SRR7868852_GSM3393533 | ChIP-Seq | 406.0 MB |
| SRR7868853_GSM3393533 | ChIP-Seq | 447.0 MB |
| SRR7868854_GSM3393534 | ChIP-Seq | 473.0 MB |
| SRR7868855_GSM3393534 | ChIP-Seq | 487.0 MB |
| SRR7868856_GSM3393535 | ChIP-Seq | 592.0 MB |
| SRR7868857_GSM3393535 | ChIP-Seq | 551.0 MB |
| SRR7868858_GSM3393536 | ChIP-Seq | 492.0 MB |
| SRR7868859_GSM3393536 | ChIP-Seq | 673.0 MB |
| SRR7868860_GSM3393537 | ChIP-Seq | 353.0 MB |
| SRR7868861_GSM3393537 | ChIP-Seq | 323.0 MB |
| SRR7868862_GSM3393538 | ChIP-Seq | 731.0 MB |
| SRR7868863_GSM3393538 | ChIP-Seq | 1.0 GB |
| SRR7868864 | ChIP-Seq | 514.0 MB |
| SRR7868864_GSM3393539 | ChIP-Seq | 514.0 MB |
| SRR7868865_GSM3393539 | ChIP-Seq | 577.0 MB |
| SRR7868866_GSM3393540 | ChIP-Seq | 1022.0 MB |
| SRR7868867_GSM3393540 | ChIP-Seq | 801.0 MB |
| SRR7868868_GSM3393541 | ChIP-Seq | 380.0 MB |
| SRR7868869_GSM3393541 | ChIP-Seq | 346.0 MB |
| SRR7868870_GSM3393542 | ChIP-Seq | 774.0 MB |
| SRR7868871_GSM3393542 | ChIP-Seq | 839.0 MB |
| SRR7868872_GSM3393543 | ChIP-Seq | 465.0 MB |
| SRR7868873_GSM3393543 | ChIP-Seq | 755.0 MB |
| SRR7868874_GSM3393544 | ChIP-Seq | 737.0 MB |
| SRR7868875_GSM3393544 | ChIP-Seq | 1.3 GB |
| SRR7868876_GSM3393545 | ChIP-Seq | 443.0 MB |
| SRR7868877_GSM3393545 | ChIP-Seq | 526.0 MB |
| SRR7868878_GSM3393546 | ChIP-Seq | 611.0 MB |
| SRR7868879_GSM3393546 | ChIP-Seq | 1.0 GB |
| SRR7868880_GSM3393547 | ChIP-Seq | 385.0 MB |
| SRR7868881_GSM3393547 | ChIP-Seq | 376.0 MB |
| SRR7868882_GSM3393548 | ChIP-Seq | 293.0 MB |
| SRR7868883_GSM3393548 | ChIP-Seq | 271.0 MB |
| SRR7868884_GSM3393549 | ChIP-Seq | 740.0 MB |
| SRR7868885_GSM3393549 | ChIP-Seq | 820.0 MB |
| SRR7868886_GSM3393550 | ChIP-Seq | 436.0 MB |
| SRR7868887_GSM3393550 | ChIP-Seq | 574.0 MB |
| SRR7868888_GSM3393551 | ChIP-Seq | 1.1 GB |
| SRR7868889 | ChIP-Seq | 1.9 GB |
| SRR7868889_GSM3393551 | ChIP-Seq | 1.9 GB |
| SRR7868890_GSM3393552 | ChIP-Seq | 847.0 MB |
| SRR7868891_GSM3393552 | ChIP-Seq | 1.0 GB |
| SRR7868892_GSM3393553 | ChIP-Seq | 463.0 MB |
| SRR7868893_GSM3393553 | ChIP-Seq | 513.0 MB |
| SRR7868894_GSM3393554 | ChIP-Seq | 430.0 MB |
| SRR7868895_GSM3393554 | ChIP-Seq | 460.0 MB |
| SRR7868896_GSM3393555 | ChIP-Seq | 340.0 MB |
| SRR7868897_GSM3393555 | ChIP-Seq | 317.0 MB |
| SRR7868898_GSM3393556 | ChIP-Seq | 348.0 MB |
| SRR7868899_GSM3393556 | ChIP-Seq | 394.0 MB |
| SRR7868900_GSM3393557 | ChIP-Seq | 450.0 MB |
| SRR7868901_GSM3393557 | ChIP-Seq | 549.0 MB |
| SRR7868902_GSM3393558 | ChIP-Seq | 358.0 MB |
| SRR7868903_GSM3393558 | ChIP-Seq | 366.0 MB |
| SRR7868904_GSM3393559 | ChIP-Seq | 716.0 MB |
| SRR7868905_GSM3393559 | ChIP-Seq | 672.0 MB |
| SRR7868906_GSM3393560 | ChIP-Seq | 496.0 MB |
| SRR7868907_GSM3393560 | ChIP-Seq | 573.0 MB |
| SRR7868908_GSM3393561 | ChIP-Seq | 1.1 GB |
| SRR7868909_GSM3393561 | ChIP-Seq | 1.1 GB |
| SRR7868910_GSM3393562 | ChIP-Seq | 1.3 GB |
| SRR7868911_GSM3393562 | ChIP-Seq | 1.3 GB |
| SRR7868912_GSM3393563 | ChIP-Seq | 980.0 MB |
| SRR7868913_GSM3393563 | ChIP-Seq | 1.1 GB |
| SRR7868914_GSM3393564 | ChIP-Seq | 717.0 MB |
| SRR7868915_GSM3393564 | ChIP-Seq | 696.0 MB |
| SRR7868916_GSM3393565 | ChIP-Seq | 652.0 MB |
| SRR7868917_GSM3393565 | ChIP-Seq | 837.0 MB |
| SRR7868918_GSM3393566 | ChIP-Seq | 964.0 MB |
| SRR7868919_GSM3393566 | ChIP-Seq | 739.0 MB |
| SRR7868920_GSM3393567 | ChIP-Seq | 900.0 MB |
| SRR7868921_GSM3393567 | ChIP-Seq | 874.0 MB |
| SRR7868922_GSM3393568 | ChIP-Seq | 917.0 MB |
| SRR7868923_GSM3393568 | ChIP-Seq | 868.0 MB |
| SRR7868924_GSM3393569 | ChIP-Seq | 898.0 MB |
| SRR7868925_GSM3393569 | ChIP-Seq | 1.1 GB |
| SRR7868926_GSM3393570 | ChIP-Seq | 2.3 GB |
| SRR7868927_GSM3393570 | ChIP-Seq | 2.1 GB |
| SRR7868928_GSM3393571 | ChIP-Seq | 556.0 MB |
| SRR7868929_GSM3393571 | ChIP-Seq | 721.0 MB |
| SRR7868930_GSM3393572 | ChIP-Seq | 594.0 MB |
| SRR7868931_GSM3393572 | ChIP-Seq | 691.0 MB |
| SRR7868932_GSM3393573 | ChIP-Seq | 664.0 MB |
| SRR7868933_GSM3393573 | ChIP-Seq | 608.0 MB |
| SRR7868934_GSM3393574 | ChIP-Seq | 575.0 MB |
| SRR7868935_GSM3393574 | ChIP-Seq | 635.0 MB |
| SRR7868936_GSM3393575 | ChIP-Seq | 417.0 MB |
| SRR7868937_GSM3393575 | ChIP-Seq | 452.0 MB |
| SRR7868938_GSM3393576 | ChIP-Seq | 338.0 MB |
| SRR7868939_GSM3393576 | ChIP-Seq | 496.0 MB |
| SRR7868940_GSM3393577 | ChIP-Seq | 360.0 MB |
| SRR7868941_GSM3393577 | ChIP-Seq | 398.0 MB |
| SRR7868942_GSM3393578 | ChIP-Seq | 323.0 MB |
| SRR7868943_GSM3393578 | ChIP-Seq | 280.0 MB |
| SRR7868944_GSM3393579 | ChIP-Seq | 271.0 MB |
| SRR7868945 | ChIP-Seq | 241.8 MB |
| SRR7868945_GSM3393579 | ChIP-Seq | 241.0 MB |
| SRR7868946 | ChIP-Seq | 458.6 MB |
| SRR7868946_GSM3393580 | ChIP-Seq | 458.0 MB |
| SRR7868947_GSM3393580 | ChIP-Seq | 500.0 MB |
| SRR7868948_GSM3393581 | ChIP-Seq | 305.0 MB |
| SRR7868949_GSM3393581 | ChIP-Seq | 351.0 MB |
| SRR7868950_GSM3393582 | ChIP-Seq | 291.0 MB |
| SRR7868951_GSM3393582 | ChIP-Seq | 304.0 MB |
| SRR7868952_GSM3393583 | ChIP-Seq | 426.0 MB |
| SRR7868953_GSM3393583 | ChIP-Seq | 458.0 MB |
| SRR7868954_GSM3393584 | ChIP-Seq | 887.0 MB |
| SRR7868955_GSM3393584 | ChIP-Seq | 965.0 MB |
| SRR7868956 | ChIP-Seq | 359.6 MB |
| SRR7868956_GSM3393585 | ChIP-Seq | 359.0 MB |
| SRR7868957_GSM3393585 | ChIP-Seq | 392.0 MB |
| SRR7868958_GSM3393586 | ChIP-Seq | 1003.0 MB |
| SRR7868959_GSM3393586 | ChIP-Seq | 1.1 GB |
| SRR7868960_GSM3393587 | ChIP-Seq | 701.0 MB |
| SRR7868961_GSM3393587 | ChIP-Seq | 601.0 MB |
| SRR7868962_GSM3393588 | ChIP-Seq | 256.0 MB |
| SRR7868963_GSM3393588 | ChIP-Seq | 254.0 MB |
| SRR7868964 | ChIP-Seq | 750.1 MB |
| SRR7868964_GSM3393589 | ChIP-Seq | 750.0 MB |
| SRR7868965 | ChIP-Seq | 684.6 MB |
| SRR7868965_GSM3393589 | ChIP-Seq | 684.0 MB |
| SRR7868966_GSM3393590 | ChIP-Seq | 773.0 MB |
| SRR7868967_GSM3393590 | ChIP-Seq | 354.0 MB |
| SRR7868968_GSM3393591 | ChIP-Seq | 243.0 MB |
| SRR7868969_GSM3393591 | ChIP-Seq | 251.0 MB |
| SRR7868970_GSM3393592 | ChIP-Seq | 334.0 MB |
| SRR7868971_GSM3393592 | ChIP-Seq | 419.0 MB |
| SRR7868972_GSM3393593 | ChIP-Seq | 388.0 MB |
| SRR7868973_GSM3393593 | ChIP-Seq | 403.0 MB |
| SRR7868974_GSM3393594 | ChIP-Seq | 1.6 GB |
| SRR7868975_GSM3393594 | ChIP-Seq | 1.5 GB |
| SRR7868976 | ChIP-Seq | 286.4 MB |
| SRR7868976_GSM3393595 | ChIP-Seq | 286.0 MB |
| SRR7868977 | ChIP-Seq | 385.2 MB |
| SRR7868977_GSM3393595 | ChIP-Seq | 385.0 MB |
| SRR7868978_GSM3393596 | ChIP-Seq | 460.0 MB |
| SRR7868979_GSM3393596 | ChIP-Seq | 544.0 MB |
| SRR7868980_GSM3393597 | ChIP-Seq | 537.0 MB |
| SRR7868981_GSM3393597 | ChIP-Seq | 532.0 MB |
| SRR7868982_GSM3393598 | ChIP-Seq | 431.0 MB |
| SRR7868983_GSM3393598 | ChIP-Seq | 433.0 MB |
| SRR7868984_GSM3393599 | ChIP-Seq | 466.0 MB |
| SRR7868985_GSM3393599 | ChIP-Seq | 441.0 MB |
| SRR7868986_GSM3393600 | ChIP-Seq | 570.0 MB |
| SRR7868987_GSM3393600 | ChIP-Seq | 532.0 MB |
| SRR7868988_GSM3393601 | ChIP-Seq | 339.0 MB |
| SRR7868989_GSM3393601 | ChIP-Seq | 303.0 MB |
| SRR7868990_GSM3393602 | ChIP-Seq | 230.0 MB |
| SRR7868991_GSM3393602 | ChIP-Seq | 306.0 MB |
| SRR7868992_GSM3393603 | ChIP-Seq | 340.0 MB |
| SRR7868993 | ChIP-Seq | 290.8 MB |
| SRR7868993_GSM3393603 | ChIP-Seq | 290.0 MB |
| SRR7868994_GSM3393604 | ChIP-Seq | 773.0 MB |
| SRR7868995_GSM3393604 | ChIP-Seq | 510.0 MB |
| SRR7868996 | ChIP-Seq | 455.2 MB |
| SRR7868996_GSM3393605 | ChIP-Seq | 455.0 MB |
| SRR7868997_GSM3393605 | ChIP-Seq | 419.0 MB |
| SRR7868998 | ChIP-Seq | 489.3 MB |
| SRR7868998_GSM3393606 | ChIP-Seq | 489.0 MB |
| SRR7868999_GSM3393606 | ChIP-Seq | 417.0 MB |
| SRR7869000_GSM3393607 | ChIP-Seq | 569.0 MB |
| SRR7869001_GSM3393607 | ChIP-Seq | 594.0 MB |
| SRR7869002_GSM3393608 | ChIP-Seq | 805.0 MB |
| SRR7869003_GSM3393608 | ChIP-Seq | 668.0 MB |
| SRR7869004_GSM3393609 | ChIP-Seq | 344.0 MB |
| SRR7869005_GSM3393609 | ChIP-Seq | 338.0 MB |
| SRR7869006_GSM3393610 | ChIP-Seq | 672.0 MB |
| SRR7869007 | ChIP-Seq | 614.2 MB |
| SRR7869007_GSM3393610 | ChIP-Seq | 614.0 MB |
| SRR7869008_GSM3393611 | ChIP-Seq | 633.0 MB |
| SRR7869009_GSM3393611 | ChIP-Seq | 636.0 MB |
| SRR7869010_GSM3393612 | ChIP-Seq | 591.0 MB |
| SRR7869011_GSM3393612 | ChIP-Seq | 636.0 MB |
| SRR7869012_GSM3393613 | ChIP-Seq | 549.0 MB |
| SRR7869013_GSM3393613 | ChIP-Seq | 542.0 MB |
| SRR7869014_GSM3393614 | ChIP-Seq | 750.0 MB |
| SRR7869015_GSM3393614 | ChIP-Seq | 852.0 MB |
| SRR7869016_GSM3393615 | ChIP-Seq | 706.0 MB |
| SRR7869017_GSM3393615 | ChIP-Seq | 779.0 MB |
| SRR7869018_GSM3393616 | ChIP-Seq | 1.8 GB |
| SRR7869019_GSM3393616 | ChIP-Seq | 2.1 GB |
| SRR7869020_GSM3393617 | ChIP-Seq | 502.0 MB |
| SRR7869021_GSM3393617 | ChIP-Seq | 731.0 MB |
| SRR7869022_GSM3393618 | ChIP-Seq | 640.0 MB |
| SRR7869023_GSM3393618 | ChIP-Seq | 690.0 MB |
| SRR7869024_GSM3393619 | ChIP-Seq | 693.0 MB |
| SRR7869025_GSM3393619 | ChIP-Seq | 561.0 MB |
| SRR7869026_GSM3393620 | ChIP-Seq | 522.0 MB |
| SRR7869027_GSM3393620 | ChIP-Seq | 510.0 MB |
| SRR7869028_GSM3393621 | ChIP-Seq | 1.7 GB |
| SRR7869029_GSM3393622 | ChIP-Seq | 1.9 GB |
| SRR7869030_GSM3393623 | ChIP-Seq | 1.3 GB |
| SRR7869031_GSM3393624 | ChIP-Seq | 1.9 GB |
| SRR7869032_GSM3393625 | ChIP-Seq | 2.1 GB |
| SRR7869033_GSM3393626 | ChIP-Seq | 2.0 GB |
| SRR7869034_GSM3393627 | ChIP-Seq | 2.4 GB |
| SRR7869035_GSM3393628 | ChIP-Seq | 2.0 GB |
| SRR7869036_GSM3393629 | ChIP-Seq | 885.0 MB |
| SRR7869037_GSM3393630 | ChIP-Seq | 1.1 GB |
| SRR7869038_GSM3393631 | ChIP-Seq | 823.0 MB |
| SRR7869039_GSM3393632 | ChIP-Seq | 1.4 GB |
| SRR7869040_GSM3393633 | ChIP-Seq | 2.2 GB |
| SRR7869041_GSM3393634 | ChIP-Seq | 1.8 GB |
| SRR7869042_GSM3393635 | ChIP-Seq | 1.7 GB |
| SRR7869043_GSM3393636 | ChIP-Seq | 1.9 GB |
| SRSF1_ChIP_rep1_HepG2_batch17.fastq.gz | ChIP-Seq | 457.4 MB |
| SRSF1_ChIP_rep1_K562_batch11.fastq.gz | ChIP-Seq | 417.5 MB |
| SRSF1_ChIP_rep2_HepG2_batch17.fastq.gz | ChIP-Seq | 466.0 MB |
| SRSF1_ChIP_rep2_K562_batch11.fastq.gz | ChIP-Seq | 452.5 MB |
| SRSF3_ChIP_rep1_HepG2_batch3.fastq.gz | ChIP-Seq | 605.2 MB |
| SRSF3_ChIP_rep1_K562_batch4.fastq.gz | ChIP-Seq | 338.6 MB |
| SRSF3_ChIP_rep2_HepG2_batch3.fastq.gz | ChIP-Seq | 630.6 MB |
| SRSF3_ChIP_rep2_K562_batch4.fastq.gz | ChIP-Seq | 496.2 MB |
| SRSF4_ChIP_rep1_HepG2_batch5.fastq.gz | ChIP-Seq | 868.7 MB |
| SRSF4_ChIP_rep1_K562_batch6.fastq.gz | ChIP-Seq | 360.1 MB |
| SRSF4_ChIP_rep2_HepG2_batch5.fastq.gz | ChIP-Seq | 1005.1 MB |
| SRSF4_ChIP_rep2_K562_batch6.fastq.gz | ChIP-Seq | 398.1 MB |
| SRSF7_ChIP_rep1_HepG2_batch5.fastq.gz | ChIP-Seq | 480.6 MB |
| SRSF7_ChIP_rep1_K562_batch4.fastq.gz | ChIP-Seq | 323.7 MB |
| SRSF7_ChIP_rep2_HepG2_batch5.fastq.gz | ChIP-Seq | 528.9 MB |
| SRSF7_ChIP_rep2_K562_batch4.fastq.gz | ChIP-Seq | 280.9 MB |
| SRSF9_ChIP_rep1_HepG2_batch5.fastq.gz | ChIP-Seq | 842.9 MB |
| SRSF9_ChIP_rep1_K562_batch4.fastq.gz | ChIP-Seq | 271.1 MB |
| SRSF9_ChIP_rep2_HepG2_batch5.fastq.gz | ChIP-Seq | 974.6 MB |
| SRSF9_ChIP_rep2_K562_batch4.fastq.gz | ChIP-Seq | 241.8 MB |
| TAF15_ChIP_rep1_HepG2_batch12.fastq.gz | ChIP-Seq | 737.8 MB |
| TAF15_ChIP_rep1_K562_batch9.fastq.gz | ChIP-Seq | 334.8 MB |
| TAF15_ChIP_rep2_HepG2_batch12.fastq.gz | ChIP-Seq | 1.3 GB |
| TAF15_ChIP_rep2_K562_batch9.fastq.gz | ChIP-Seq | 419.1 MB |
| TARDBP_ChIP_rep1_HepG2_batch15.fastq.gz | ChIP-Seq | 716.2 MB |
| TARDBP_ChIP_rep1_K562_batch10.fastq.gz | ChIP-Seq | 569.9 MB |
| TARDBP_ChIP_rep2_HepG2_batch15.fastq.gz | ChIP-Seq | 672.2 MB |
| TARDBP_ChIP_rep2_K562_batch10.fastq.gz | ChIP-Seq | 594.6 MB |
| U2AF1_ChIP_rep1_HepG2_batch17.fastq.gz | ChIP-Seq | 480.9 MB |
| U2AF1_ChIP_rep1_K562_batch11.fastq.gz | ChIP-Seq | 458.6 MB |
| U2AF1_ChIP_rep2_HepG2_batch17.fastq.gz | ChIP-Seq | 389.7 MB |
| U2AF1_ChIP_rep2_K562_batch11.fastq.gz | ChIP-Seq | 500.3 MB |
| U2AF2_ChIP_rep1_HepG2_batch17.fastq.gz | ChIP-Seq | 406.8 MB |
| U2AF2_ChIP_rep1_K562_batch11.fastq.gz | ChIP-Seq | 305.3 MB |
| U2AF2_ChIP_rep2_HepG2_batch17.fastq.gz | ChIP-Seq | 447.9 MB |
| U2AF2_ChIP_rep2_K562_batch11.fastq.gz | ChIP-Seq | 351.0 MB |
| XRCC5_ChIP_rep1_HepG2_batch16.fastq.gz | ChIP-Seq | 496.2 MB |
| XRCC5_ChIP_rep1_K562_batch7.fastq.gz | ChIP-Seq | 805.3 MB |
| XRCC5_ChIP_rep2_HepG2_batch16.fastq.gz | ChIP-Seq | 573.1 MB |
| XRCC5_ChIP_rep2_K562_batch7.fastq.gz | ChIP-Seq | 668.0 MB |
| YY1chip-NC.rep1_R1.fq.gz | ChIP-Seq | 885.2 MB |
| YY1chip-NC.rep2_R1.fq.gz | ChIP-Seq | 1.1 GB |
| YY1chip-rbm25kd.rep1_R1.fq.gz | ChIP-Seq | 823.8 MB |
| YY1chip-rbm25kd.rep2_R1.fq.gz | ChIP-Seq | 1.4 GB |
Potentially related datasets 3
These accessions were text-mined from the PMC full text. They may be referenced for comparison, cited from other studies, or otherwise mentioned without being primary data for this paper.
| Accession | Source | Title |
|---|---|---|
| GSE120105 | GSE · GEO GEO ↗ | Pervasive Chromatin-RNA Binding Protein Interactions Enable RNA-based Regulation of Transcription [GRO-Seq] |
| GSE120023 | GSE · GEO GEO ↗ | Pervasive Chromatin-RNA Binding Protein Interactions Enable RNA-based Regulation of Transcription [HiC-Seq] |
| GSE120104 | GSE · GEO GEO ↗ | Pervasive Chromatin-RNA Binding Protein Interactions Enable RNA-based Regulation of Transcription [ChIP-Seq] |
Analysis pipelines 4
| Pipeline | Assay | Steps | Dataset |
|---|---|---|---|
| GSE120023 Hi-C Data Processing geo_data_processing | Hi-C | 5 | GSE120023 |
| GSE120104 ChIP-seq Data Processing geo_data_processing | ChIP-seq | 5 | GSE120104 |
| GSE120105 Data Processing geo_data_processing | — | 5 | GSE120105 |
| GSE120110 Hi-C Data Processing geo_data_processing | Hi-C | 5 | GSE120110 |
Funding 6 grants
| Grant | Funder |
|---|---|
| R01 HG004659 | NHGRI NIH HHS (United States) |
| U54 HG007005 | NHGRI NIH HHS (United States) |
| K99 DK120952 | NIDDK NIH HHS (United States) |
| R01 GM052872 | NIGMS NIH HHS (United States) |
| RC1 CA145889 | NCI NIH HHS (United States) |
| R01 GM049369 | NIGMS NIH HHS (United States) |