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GSE89036

GSE GEO
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Genome-wide maps of H3K27me3 in CD8 T cell subsets

Organism: Mus musculus
Platform: GPL17021
Samples: 8
Experiment Types:
Genome binding/occupancy profiling by high throughput sequencing
Submitted: Oct 21 2016
Last Updated: May 15 2019
Status: Public on Feb 21 2017
Contact: Howard,Y,Chang (Stanford University)

Relations

SubSeries of: GSE95238 BioProject: https://www.ncbi.nlm.nih.gov/bioproject/PRJNA349986 SRA: https://www.ncbi.nlm.nih.gov/sra?term=SRP091924

Summary

To understand epigenetic repression mechanisms underlying CD8 T cell differentiation, we performed ChIP-seq of repressive mark H3K27me3 in CD8 T cell subsets.

Overall Design

Examination of H3K27me3 histone modification in 4 CD8 T cell subsets.

Analysis (3 steps)

View Data Processing
Processing steps for GSE89036
  1. Reads were aligned to mm10 by BWA
  2. Reads with low quality (MAPQ < 30) were filtered out.
  3. If multiple reads were mapped to the exact same location, only one read was kept.

Supplementary Files (4)

GSE89036_MP_H3K27me3.bw Download
GSE89036_Memory_H3K27me3.bw Download
GSE89036_TE_H3K27me3.bw Download
GSE89036_TN_H3K27me3.bw Download
GEO Samples (8)
GSM2357737 GSM2357738 GSM2357739 GSM2357740 GSM2357741 GSM2357742 GSM2357743 GSM2357744

Dataset Citations (2)

Early transcriptional and epigenetic regulation of CD8<sup>+</sup> T cell differentiation revealed by single-cell RNA sequencing.
PMID 28218746 · 2017 · Nature immunology
Boyko Kakaradov, Janilyn Arsenio, Christella E Widjaja, Zhaoren He, Stefan Aigner, Patrick J Metz, Bingfei Yu, Ellen J Wehrens, Justine Lopez, Stephanie H Kim, Elina I Zuniga, Ananda W Goldrath, John T Chang, Gene W Yeo
PubMed citation (PMID 28288100)

SRA Experiments (48) and Runs (48)

Total: 30383 MB
SRX2263333 SRP091924 OTHER SINGLE
GSM2357713: TN_ATAC-seq_rep1; Mus musculus; OTHER
Sample: SRS1755799
BioProject: PRJNA349986
BioSample: SAMN05933608
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: naive CD8 T cells
strain: C57BL/6
age: six to seven weeks
tissue: Spleen
Original files (1)
naive CD8 T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR4437313 26741423 1337071150 882.3 TN_ATAC-seq_rep1.fastq, SRR4437313, SRR4437313.sralite SRA
SRX2263334 SRP091924 OTHER SINGLE
GSM2357714: TN_ATAC-seq_rep2; Mus musculus; OTHER
Sample: SRS1755800
BioProject: PRJNA349986
BioSample: SAMN05933607
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: naive CD8 T cells
strain: C57BL/6
age: six to seven weeks
tissue: Spleen
Original files (1)
naive CD8 T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR4437314 20542729 1027136450 678.08 TN_ATAC-seq_rep2.fastq, SRR4437314, SRR4437314.sralite SRA
SRX2263335 SRP091924 OTHER SINGLE
GSM2357715: TE_ATAC-seq_rep1; Mus musculus; OTHER
Sample: SRS1755802
BioProject: PRJNA349986
BioSample: SAMN05933606
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: KLRG1hiIL7Rlo terminal effector CD8 T cells
strain: C57BL/6
age: six to seven weeks
tissue: Spleen
Original files (1)
KLRG1hiIL7Rlo terminal effector CD8 T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR4437315 22183765 1109188250 733.27 TE_ATAC-seq_rep1.fastq, SRR4437315, SRR4437315.sralite SRA
SRX2263336 SRP091924 OTHER SINGLE
GSM2357716: TE_ATAC-seq_rep2; Mus musculus; OTHER
Sample: SRS1755801
BioProject: PRJNA349986
BioSample: SAMN05933605
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: KLRG1hiIL7Rlo terminal effector CD8 T cells
strain: C57BL/6
age: six to seven weeks
tissue: Spleen
Original files (1)
KLRG1hiIL7Rlo terminal effector CD8 T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR4437316 19650404 982520200 649.2 TE_ATAC-seq_rep2.fastq, SRR4437316, SRR4437316.sralite SRA
SRX2263337 SRP091924 OTHER SINGLE
GSM2357717: MP_ATAC-seq_rep1; Mus musculus; OTHER
Sample: SRS1755804
BioProject: PRJNA349986
BioSample: SAMN05933604
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: KLRG1loIL7Rhi memory precursor CD8 T cells
strain: C57BL/6
age: six to seven weeks
tissue: Spleen
Original files (1)
KLRG1loIL7Rhi memory precursor CD8 T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR4437317 20803622 1040181100 684.09 MP_ATAC-seq_rep1.fastq, SRR4437317, SRR4437317.sralite SRA
SRX2263338 SRP091924 OTHER SINGLE
GSM2357718: MP_ATAC-seq_rep2; Mus musculus; OTHER
Sample: SRS1755803
BioProject: PRJNA349986
BioSample: SAMN05933603
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: KLRG1loIL7Rhi memory precursor CD8 T cells
strain: C57BL/6
age: six to seven weeks
tissue: Spleen
Original files (1)
KLRG1loIL7Rhi memory precursor CD8 T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR4437318 18856727 942836350 622.28 MP_ATAC-seq_rep2.fastq, SRR4437318, SRR4437318.sralite SRA
SRX2263339 SRP091924 OTHER SINGLE
GSM2357719: Memory_ATAC-seq_rep1; Mus musculus; OTHER
Sample: SRS1755805
BioProject: PRJNA349986
BioSample: SAMN05933602
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: KLRG1loIL7Rhi memory CD8 T cells
strain: C57BL/6
age: six to seven weeks
tissue: Spleen
Original files (1)
KLRG1loIL7Rhi memory CD8 T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR4437319 11537763 576888150 381.38 Memory_ATAC-seq_rep1.fastq, SRR4437319, SRR4437319.sralite SRA
SRX2263340 SRP091924 OTHER SINGLE
GSM2357720: Memory_ATAC-seq_rep2; Mus musculus; OTHER
Sample: SRS1755806
BioProject: PRJNA349986
BioSample: SAMN05933601
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: KLRG1loIL7Rhi memory CD8 T cells
strain: C57BL/6
age: six to seven weeks
tissue: Spleen
Original files (1)
KLRG1loIL7Rhi memory CD8 T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR4437320 32417837 1620891850 1073.05 Memory_ATAC-seq_rep2.fastq, SRR4437320, SRR4437320.sralite SRA
SRX2263341 SRP091924 ChIP-Seq SINGLE
GSM2357721: TN_H3K4me3_rep1; Mus musculus; ChIP-Seq
Sample: SRS1755807
BioProject: PRJNA349986
BioSample: SAMN05933600
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: naive CD8 T cells
strain: C57BL/6
age: six to seven weeks
tissue: Spleen
Original files (1)
naive CD8 T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR4437321 46262495 2313124750 991.89 TN_H3K4me3_rep1.fastq, SRR4437321, SRR4437321.sralite SRA
SRX2263342 SRP091924 ChIP-Seq SINGLE
GSM2357722: TN_H3K4me3_rep2; Mus musculus; ChIP-Seq
Sample: SRS1755808
BioProject: PRJNA349986
BioSample: SAMN05933599
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: naive CD8 T cells
strain: C57BL/6
age: six to seven weeks
tissue: Spleen
Original files (1)
naive CD8 T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR4437322 33572925 1678646250 719.44 TN_H3K4me3_rep2.fastq, SRR4437322, SRR4437322.sralite SRA
SRX2263343 SRP091924 ChIP-Seq SINGLE
GSM2357723: TE_H3K4me3_rep1; Mus musculus; ChIP-Seq
Sample: SRS1755809
BioProject: PRJNA349986
BioSample: SAMN05933598
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: KLRG1hiIL7Rlo terminal effector CD8 T cells
strain: C57BL/6
age: six to seven weeks
tissue: Spleen
Original files (1)
KLRG1hiIL7Rlo terminal effector CD8 T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR4437323 15400892 770044600 430.46 TE_H3K4me3_rep1.fastq, SRR4437323, SRR4437323.sralite SRA
SRX2263344 SRP091924 ChIP-Seq SINGLE
GSM2357724: TE_H3K4me3_rep2; Mus musculus; ChIP-Seq
Sample: SRS1755810
BioProject: PRJNA349986
BioSample: SAMN05933597
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: KLRG1hiIL7Rlo terminal effector CD8 T cells
strain: C57BL/6
age: six to seven weeks
tissue: Spleen
Original files (1)
KLRG1hiIL7Rlo terminal effector CD8 T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR4437324 31691826 1584591300 686.9 TE_H3K4me3_rep2.fastq, SRR4437324, SRR4437324.sralite SRA
SRX2263345 SRP091924 ChIP-Seq SINGLE
GSM2357725: MP_H3K4me3_rep1; Mus musculus; ChIP-Seq
Sample: SRS1755811
BioProject: PRJNA349986
BioSample: SAMN05933596
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: KLRG1loIL7Rhi memory precursor CD8 T cells
strain: C57BL/6
age: six to seven weeks
tissue: Spleen
Original files (1)
KLRG1loIL7Rhi memory precursor CD8 T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR4437325 22514628 1125731400 615.83 MP_H3K4me3_rep1.fastq, SRR4437325, SRR4437325.sralite SRA
SRX2263346 SRP091924 ChIP-Seq SINGLE
GSM2357726: MP_H3K4me3_rep2; Mus musculus; ChIP-Seq
Sample: SRS1755812
BioProject: PRJNA349986
BioSample: SAMN05933595
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: KLRG1loIL7Rhi memory precursor CD8 T cells
strain: C57BL/6
age: six to seven weeks
tissue: Spleen
Original files (1)
KLRG1loIL7Rhi memory precursor CD8 T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR4437326 25224006 1261200300 540.4 MP_H3K4me3_rep2.fastq, SRR4437326, SRR4437326.sralite SRA
SRX2263347 SRP091924 ChIP-Seq SINGLE
GSM2357727: Memory_H3K4me3_rep1; Mus musculus; ChIP-Seq
Sample: SRS1755813
BioProject: PRJNA349986
BioSample: SAMN05933594
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: KLRG1loIL7Rhi memory CD8 T cells
strain: C57BL/6
age: six to seven weeks
tissue: Spleen
Original files (1)
KLRG1loIL7Rhi memory CD8 T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR4437327 25909358 1295467900 848.84 Memory_H3K4me3_rep1.fastq, SRR4437327, SRR4437327.sralite SRA
SRX2263348 SRP091924 ChIP-Seq SINGLE
GSM2357728: Memory_H3K4me3_rep2; Mus musculus; ChIP-Seq
Sample: SRS1755814
BioProject: PRJNA349986
BioSample: SAMN05933573
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: KLRG1loIL7Rhi memory CD8 T cells
strain: C57BL/6
age: six to seven weeks
tissue: Spleen
Original files (1)
KLRG1loIL7Rhi memory CD8 T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR4437328 16435074 821753700 266.6 Memory_H3K4me3_rep2.fastq, SRR4437328, SRR4437328.sralite SRA
SRX2263349 SRP091924 ChIP-Seq SINGLE
GSM2357729: TN_H3K4me1_rep1; Mus musculus; ChIP-Seq
Sample: SRS1755815
BioProject: PRJNA349986
BioSample: SAMN05933572
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: naive CD8 T cells
strain: C57BL/6
age: six to seven weeks
tissue: Spleen
Original files (1)
naive CD8 T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR4437329 28430510 1421525500 609.9 TN_H3K4me1_rep1.fastq, SRR4437329, SRR4437329.sralite SRA
SRX2263350 SRP091924 ChIP-Seq SINGLE
GSM2357730: TN_H3K4me1_rep2; Mus musculus; ChIP-Seq
Sample: SRS1755816
BioProject: PRJNA349986
BioSample: SAMN05933619
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: naive CD8 T cells
strain: C57BL/6
age: six to seven weeks
tissue: Spleen
Original files (1)
naive CD8 T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR4437330 27592193 1379609650 727.12 TN_H3K4me1_rep2.fastq, SRR4437330, SRR4437330.sralite SRA
SRX2263351 SRP091924 ChIP-Seq SINGLE
GSM2357731: TE_H3K4me1_rep1; Mus musculus; ChIP-Seq
Sample: SRS1755818
BioProject: PRJNA349986
BioSample: SAMN05933618
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: KLRG1hiIL7Rlo terminal effector CD8 T cells
strain: C57BL/6
age: six to seven weeks
tissue: Spleen
Original files (1)
KLRG1hiIL7Rlo terminal effector CD8 T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR4437331 33526334 1676316700 921.58 TE_H3K4me1_rep1.fastq, SRR4437331, SRR4437331.sralite SRA
SRX2263352 SRP091924 ChIP-Seq SINGLE
GSM2357732: TE_H3K4me1_rep2; Mus musculus; ChIP-Seq
Sample: SRS1755817
BioProject: PRJNA349986
BioSample: SAMN05933617
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: KLRG1hiIL7Rlo terminal effector CD8 T cells
strain: C57BL/6
age: six to seven weeks
tissue: Spleen
Original files (1)
KLRG1hiIL7Rlo terminal effector CD8 T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR4437332 30871872 1543593600 1040.42 TE_H3K4me1_rep2.fastq, SRR4437332, SRR4437332.sralite SRA
SRX2263353 SRP091924 ChIP-Seq SINGLE
GSM2357733: MP_H3K4me1_rep1; Mus musculus; ChIP-Seq
Sample: SRS1755820
BioProject: PRJNA349986
BioSample: SAMN05933616
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: KLRG1loIL7Rhi memory precursor CD8 T cells
strain: C57BL/6
age: six to seven weeks
tissue: Spleen
Original files (1)
KLRG1loIL7Rhi memory precursor CD8 T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR4437333 25989205 1299460250 891.58 MP_H3K4me1_rep1.fastq, SRR4437333, SRR4437333.sralite SRA
SRX2263354 SRP091924 ChIP-Seq SINGLE
GSM2357734: MP_H3K4me1_rep2; Mus musculus; ChIP-Seq
Sample: SRS1755819
BioProject: PRJNA349986
BioSample: SAMN05933615
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: KLRG1loIL7Rhi memory precursor CD8 T cells
strain: C57BL/6
age: six to seven weeks
tissue: Spleen
Original files (1)
KLRG1loIL7Rhi memory precursor CD8 T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR4437334 40052229 2002611450 861.74 MP_H3K4me1_rep2.fastq, SRR4437334, SRR4437334.sralite SRA
SRX2263355 SRP091924 ChIP-Seq SINGLE
GSM2357735: Memory_H3K4me1_rep1; Mus musculus; ChIP-Seq
Sample: SRS1755821
BioProject: PRJNA349986
BioSample: SAMN05933614
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: KLRG1loIL7Rhi memory CD8 T cells
strain: C57BL/6
age: six to seven weeks
tissue: Spleen
Original files (1)
KLRG1loIL7Rhi memory CD8 T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR4437335 34807959 1740397950 1116.17 Memory_H3K4me1_rep1.fastq, SRR4437335, SRR4437335.sralite SRA
SRX2263356 SRP091924 ChIP-Seq SINGLE
GSM2357736: Memory_H3K4me1_rep2; Mus musculus; ChIP-Seq
Sample: SRS1755822
BioProject: PRJNA349986
BioSample: SAMN05933613
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: KLRG1loIL7Rhi memory CD8 T cells
strain: C57BL/6
age: six to seven weeks
tissue: Spleen
Original files (1)
KLRG1loIL7Rhi memory CD8 T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR4437336 21119917 1055995850 343.62 Memory_H3K4me1_rep2.fastq, SRR4437336, SRR4437336.sralite SRA
SRX2263357 SRP091924 ChIP-Seq SINGLE
GSM2357737: TN_H3K27me3_rep1; Mus musculus; ChIP-Seq
Sample: SRS1755823
BioProject: PRJNA349986
BioSample: SAMN05933612
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: naive CD8 T cells
strain: C57BL/6
age: six to seven weeks
tissue: Spleen
Original files (1)
naive CD8 T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR4437337 12663733 633186650 348.76 TN_H3K27me3_rep1.fastq.gz, SRR4437337, SRR4437337.sralite SRA
SRX2263358 SRP091924 ChIP-Seq SINGLE
GSM2357738: TN_H3K27me3_rep2; Mus musculus; ChIP-Seq
Sample: SRS1755825
BioProject: PRJNA349986
BioSample: SAMN05933611
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: naive CD8 T cells
strain: C57BL/6
age: six to seven weeks
tissue: Spleen
Original files (1)
naive CD8 T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR4437338 11791027 589551350 319.94 TN_H3K27me3_rep2.fastq.gz, SRR4437338, SRR4437338.sralite SRA
SRX2263359 SRP091924 ChIP-Seq SINGLE
GSM2357739: TE_H3K27me3_rep1; Mus musculus; ChIP-Seq
Sample: SRS1755824
BioProject: PRJNA349986
BioSample: SAMN05933610
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: KLRG1hiIL7Rlo terminal effector CD8 T cells
strain: C57BL/6
age: six to seven weeks
tissue: Spleen
Original files (1)
KLRG1hiIL7Rlo terminal effector CD8 T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR4437339 38371878 1918593900 1050.02 TE_H3K27me3_rep1.fastq.gz, SRR4437339, SRR4437339.sralite SRA
SRX2263360 SRP091924 ChIP-Seq SINGLE
GSM2357740: TE_H3K27me3_rep2; Mus musculus; ChIP-Seq
Sample: SRS1755826
BioProject: PRJNA349986
BioSample: SAMN05933609
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: KLRG1hiIL7Rlo terminal effector CD8 T cells
strain: C57BL/6
age: six to seven weeks
tissue: Spleen
Original files (1)
KLRG1hiIL7Rlo terminal effector CD8 T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR4437340 8767775 438388750 239.57 TE_H3K27me3_rep2.fastq.gz, SRR4437340, SRR4437340.sralite SRA
SRX2263361 SRP091924 ChIP-Seq SINGLE
GSM2357741: MP_H3K27me3_rep1; Mus musculus; ChIP-Seq
Sample: SRS1755828
BioProject: PRJNA349986
BioSample: SAMN05933593
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: KLRG1loIL7Rhi memory precursor CD8 T cells
strain: C57BL/6
age: six to seven weeks
tissue: Spleen
Original files (1)
KLRG1loIL7Rhi memory precursor CD8 T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR4437341 15404929 770246450 420.01 MP_H3K27me3_rep1.fastq.gz, SRR4437341, SRR4437341.sralite SRA
SRX2263362 SRP091924 ChIP-Seq SINGLE
GSM2357742: MP_H3K27me3_rep2; Mus musculus; ChIP-Seq
Sample: SRS1755829
BioProject: PRJNA349986
BioSample: SAMN05933592
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: KLRG1loIL7Rhi memory precursor CD8 T cells
strain: C57BL/6
age: six to seven weeks
tissue: Spleen
Original files (1)
KLRG1loIL7Rhi memory precursor CD8 T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR4437342 14558192 727909600 394.25 MP_H3K27me3_rep2.fastq.gz, SRR4437342, SRR4437342.sralite SRA
SRX2263363 SRP091924 ChIP-Seq SINGLE
GSM2357743: Memory_H3K27me3_rep1; Mus musculus; ChIP-Seq
Sample: SRS1755827
BioProject: PRJNA349986
BioSample: SAMN05933591
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: KLRG1loIL7Rhi memory CD8 T cells
strain: C57BL/6
age: six to seven weeks
tissue: Spleen
Original files (1)
KLRG1loIL7Rhi memory CD8 T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR4437343 27525845 1376292250 875.18 Memory_H3K27me3_rep1.fastq.gz, SRR4437343, SRR4437343.sralite SRA
SRX2263364 SRP091924 ChIP-Seq SINGLE
GSM2357744: Memory_H3K27me3_rep2; Mus musculus; ChIP-Seq
Sample: SRS1755830
BioProject: PRJNA349986
BioSample: SAMN05933590
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: KLRG1loIL7Rhi memory CD8 T cells
strain: C57BL/6
age: six to seven weeks
tissue: Spleen
Original files (1)
KLRG1loIL7Rhi memory CD8 T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR4437344 17196195 859809750 280.5 Memory_H3K27me3_rep2.fastq.gz, SRR4437344, SRR4437344.sralite SRA
SRX2263365 SRP091924 ChIP-Seq SINGLE
GSM2357745: TN_H3K27ac_rep1; Mus musculus; ChIP-Seq
Sample: SRS1755833
BioProject: PRJNA349986
BioSample: SAMN05933589
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: naive CD8 T cells
strain: C57BL/6
age: six to seven weeks
tissue: Spleen
Original files (1)
naive CD8 T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR4437345 26883088 1344154400 730.01 TN_H3K27ac_rep1.fastq, SRR4437345, SRR4437345.sralite SRA
SRX2263366 SRP091924 ChIP-Seq SINGLE
GSM2357746: TN_H3K27ac_rep2; Mus musculus; ChIP-Seq
Sample: SRS1755831
BioProject: PRJNA349986
BioSample: SAMN05933588
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: naive CD8 T cells
strain: C57BL/6
age: six to seven weeks
tissue: Spleen
Original files (1)
naive CD8 T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR4437346 16039187 801959350 432.8 TN_H3K27ac_rep2.fastq, SRR4437346, SRR4437346.sralite SRA
SRX2263367 SRP091924 ChIP-Seq SINGLE
GSM2357747: TE_H3K27ac_rep1; Mus musculus; ChIP-Seq
Sample: SRS1755832
BioProject: PRJNA349986
BioSample: SAMN05933587
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: KLRG1hiIL7Rlo terminal effector CD8 T cells
strain: C57BL/6
age: six to seven weeks
tissue: Spleen
Original files (1)
KLRG1hiIL7Rlo terminal effector CD8 T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR4437347 20159315 1007965750 669.78 TE_H3K27ac_rep1.fastq, SRR4437347, SRR4437347.sralite SRA
SRX2263368 SRP091924 ChIP-Seq SINGLE
GSM2357748: TE_H3K27ac_rep2; Mus musculus; ChIP-Seq
Sample: SRS1755834
BioProject: PRJNA349986
BioSample: SAMN05933586
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: KLRG1hiIL7Rlo terminal effector CD8 T cells
strain: C57BL/6
age: six to seven weeks
tissue: Spleen
Original files (1)
KLRG1hiIL7Rlo terminal effector CD8 T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR4437348 15236332 761816600 323.95 TE_H3K27ac_rep2.fastq, SRR4437348, SRR4437348.sralite SRA
SRX2263369 SRP091924 ChIP-Seq SINGLE
GSM2357749: MP_H3K27ac_rep1; Mus musculus; ChIP-Seq
Sample: SRS1755835
BioProject: PRJNA349986
BioSample: SAMN05933585
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: KLRG1loIL7Rhi memory precursor CD8 T cells
strain: C57BL/6
age: six to seven weeks
tissue: Spleen
Original files (1)
KLRG1loIL7Rhi memory precursor CD8 T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR4437349 26129267 1306463350 708.3 MP_H3K27ac_rep1.fastq, SRR4437349, SRR4437349.sralite SRA
SRX2263370 SRP091924 ChIP-Seq SINGLE
GSM2357750: MP_H3K27ac_rep2; Mus musculus; ChIP-Seq
Sample: SRS1755836
BioProject: PRJNA349986
BioSample: SAMN05933584
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: KLRG1loIL7Rhi memory precursor CD8 T cells
strain: C57BL/6
age: six to seven weeks
tissue: Spleen
Original files (1)
KLRG1loIL7Rhi memory precursor CD8 T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR4437350 20831757 1041587850 691.19 MP_H3K27ac_rep2.fastq, SRR4437350, SRR4437350.sralite SRA
SRX2263371 SRP091924 ChIP-Seq SINGLE
GSM2357751: Memory_H3K27ac_rep1; Mus musculus; ChIP-Seq
Sample: SRS1755838
BioProject: PRJNA349986
BioSample: SAMN05933583
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: KLRG1loIL7Rhi memory CD8 T cells
strain: C57BL/6
age: six to seven weeks
tissue: Spleen
Original files (1)
KLRG1loIL7Rhi memory CD8 T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR4437351 29446953 1472347650 969.68 Memory_H3K27ac_rep1.fastq, SRR4437351, SRR4437351.sralite SRA
SRX2263372 SRP091924 ChIP-Seq SINGLE
GSM2357752: Memory_H3K27ac_rep2; Mus musculus; ChIP-Seq
Sample: SRS1755837
BioProject: PRJNA349986
BioSample: SAMN05933582
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: KLRG1loIL7Rhi memory CD8 T cells
strain: C57BL/6
age: six to seven weeks
tissue: Spleen
Original files (1)
KLRG1loIL7Rhi memory CD8 T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR4437352 20144233 1007211650 326.1 Memory_H3K27ac_rep2.fastq, SRR4437352, SRR4437352.sralite SRA
SRX2263373 SRP091924 ChIP-Seq SINGLE
GSM2357753: TN_Input_rep1; Mus musculus; ChIP-Seq
Sample: SRS1755839
BioProject: PRJNA349986
BioSample: SAMN05933581
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: naive CD8 T cells
strain: C57BL/6
age: six to seven weeks
tissue: Spleen
Original files (1)
naive CD8 T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR4437353 12401697 620084850 355.16 TN_Input_rep1.fastq, SRR4437353, SRR4437353.sralite SRA
SRX2263374 SRP091924 ChIP-Seq SINGLE
GSM2357754: TN_Input_rep2; Mus musculus; ChIP-Seq
Sample: SRS1755840
BioProject: PRJNA349986
BioSample: SAMN05933580
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: naive CD8 T cells
strain: C57BL/6
age: six to seven weeks
tissue: Spleen
Original files (1)
naive CD8 T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR4437354 10478129 523906450 319.78 TN_Input_rep2.fastq, SRR4437354, SRR4437354.sralite SRA
SRX2263375 SRP091924 ChIP-Seq SINGLE
GSM2357755: TE_Input_rep1; Mus musculus; ChIP-Seq
Sample: SRS1755841
BioProject: PRJNA349986
BioSample: SAMN05933579
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: KLRG1hiIL7Rlo terminal effector CD8 T cells
strain: C57BL/6
age: six to seven weeks
tissue: Spleen
Original files (1)
KLRG1hiIL7Rlo terminal effector CD8 T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR4437355 42172067 2108603350 1151.65 TE_Input_rep1.fastq, SRR4437355, SRR4437355.sralite SRA
SRX2263376 SRP091924 ChIP-Seq SINGLE
GSM2357756: TE_Input_rep2; Mus musculus; ChIP-Seq
Sample: SRS1755842
BioProject: PRJNA349986
BioSample: SAMN05933578
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: KLRG1hiIL7Rlo terminal effector CD8 T cells
strain: C57BL/6
age: six to seven weeks
tissue: Spleen
Original files (1)
KLRG1hiIL7Rlo terminal effector CD8 T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR4437356 11279019 563950950 346.44 TE_Input_rep2.fastq, SRR4437356, SRR4437356.sralite SRA
SRX2263377 SRP091924 ChIP-Seq SINGLE
GSM2357757: MP_Input_rep1; Mus musculus; ChIP-Seq
Sample: SRS1755844
BioProject: PRJNA349986
BioSample: SAMN05933577
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: KLRG1loIL7Rhi memory precursor CD8 T cells
strain: C57BL/6
age: six to seven weeks
tissue: Spleen
Original files (1)
KLRG1loIL7Rhi memory precursor CD8 T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR4437357 12394792 619739600 355.28 MP_Input_rep1.fastq, SRR4437357, SRR4437357.sralite SRA
SRX2263378 SRP091924 ChIP-Seq SINGLE
GSM2357758: MP_Input_rep2; Mus musculus; ChIP-Seq
Sample: SRS1755843
BioProject: PRJNA349986
BioSample: SAMN05933576
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: KLRG1loIL7Rhi memory precursor CD8 T cells
strain: C57BL/6
age: six to seven weeks
tissue: Spleen
Original files (1)
KLRG1loIL7Rhi memory precursor CD8 T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR4437358 21921114 1096055700 753.36 MP_Input_rep2.fastq, SRR4437358, SRR4437358.sralite SRA
SRX2263379 SRP091924 ChIP-Seq SINGLE
GSM2357759: Memory_Input_rep1; Mus musculus; ChIP-Seq
Sample: SRS1755845
BioProject: PRJNA349986
BioSample: SAMN05933575
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: KLRG1loIL7Rhi memory CD8 T cells
strain: C57BL/6
age: six to seven weeks
tissue: Spleen
Original files (1)
KLRG1loIL7Rhi memory CD8 T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR4437359 18321954 916097700 644.11 Memory_Input_rep1.fastq, SRR4437359, SRR4437359.sralite SRA
SRX2263380 SRP091924 ChIP-Seq SINGLE
GSM2357760: Memory_Input_rep2; Mus musculus; ChIP-Seq
Sample: SRS1755846
BioProject: PRJNA349986
BioSample: SAMN05933574
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: KLRG1loIL7Rhi memory CD8 T cells
strain: C57BL/6
age: six to seven weeks
tissue: Spleen
Original files (1)
KLRG1loIL7Rhi memory CD8 T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR4437360 22357439 1117871950 361.42 Memory_Input_rep2.fastq, SRR4437360, SRR4437360.sralite SRA

Linked Publications (1)

Early transcriptional and epigenetic regulation of CD8<sup>+</sup> T cell differentiation revealed by single-cell RNA sequencing.
Nature immunology · 2017

Data Files (54)

Accession File Name Stored Type Output Type Mapping Assembly Size Download
— Memory_H3K27ac_rep1.fastq ChIP-Seq 969.7 MB link
— Memory_H3K27ac_rep2.fastq ChIP-Seq 326.1 MB link
— Memory_H3K27me3_rep1.fastq.gz ChIP-Seq 875.2 MB link
— Memory_H3K27me3_rep2.fastq.gz ChIP-Seq 280.5 MB link
— Memory_H3K4me1_rep1.fastq ChIP-Seq 1.1 GB link
— Memory_H3K4me1_rep2.fastq ChIP-Seq 343.6 MB link
— Memory_H3K4me3_rep1.fastq ChIP-Seq 848.8 MB link
— Memory_H3K4me3_rep2.fastq ChIP-Seq 266.6 MB link
— Memory_Input_rep1.fastq ChIP-Seq 644.1 MB link
— Memory_Input_rep2.fastq ChIP-Seq 361.4 MB link
— MP_H3K27ac_rep1.fastq ChIP-Seq 708.3 MB link
— MP_H3K27ac_rep2.fastq ChIP-Seq 691.2 MB link
— MP_H3K27me3_rep1.fastq.gz ChIP-Seq 420.0 MB link
— MP_H3K27me3_rep2.fastq.gz ChIP-Seq 394.2 MB link
— MP_H3K4me1_rep1.fastq ChIP-Seq 891.6 MB link
— MP_H3K4me1_rep2.fastq ChIP-Seq 861.7 MB link
— MP_H3K4me3_rep1.fastq ChIP-Seq 615.8 MB link
— MP_H3K4me3_rep2.fastq ChIP-Seq 540.4 MB link
— MP_Input_rep1.fastq ChIP-Seq 355.3 MB link
— MP_Input_rep2.fastq ChIP-Seq 753.4 MB link
— SRR4437329 ChIP-Seq 609.9 MB link
— SRR4437339 ChIP-Seq 1.0 GB link
— SRR4437341 ChIP-Seq 420.0 MB link
— SRR4437342 ChIP-Seq 394.2 MB link
— TE_H3K27ac_rep1.fastq ChIP-Seq 669.8 MB link
— TE_H3K27ac_rep2.fastq ChIP-Seq 323.9 MB link
— TE_H3K27me3_rep1.fastq.gz ChIP-Seq 1.0 GB link
— TE_H3K27me3_rep2.fastq.gz ChIP-Seq 239.6 MB link
— TE_H3K4me1_rep1.fastq ChIP-Seq 921.6 MB link
— TE_H3K4me1_rep2.fastq ChIP-Seq 1.0 GB link
— TE_H3K4me3_rep1.fastq ChIP-Seq 430.5 MB link
— TE_H3K4me3_rep2.fastq ChIP-Seq 686.9 MB link
— TE_Input_rep1.fastq ChIP-Seq 1.1 GB link
— TE_Input_rep2.fastq ChIP-Seq 346.4 MB link
— TN_H3K27ac_rep1.fastq ChIP-Seq 730.0 MB link
— TN_H3K27ac_rep2.fastq ChIP-Seq 432.8 MB link
— TN_H3K27me3_rep1.fastq.gz ChIP-Seq 348.8 MB link
— TN_H3K27me3_rep2.fastq.gz ChIP-Seq 319.9 MB link
— TN_H3K4me1_rep1.fastq ChIP-Seq 609.9 MB link
— TN_H3K4me1_rep2.fastq ChIP-Seq 727.1 MB link
— TN_H3K4me3_rep1.fastq ChIP-Seq 991.9 MB link
— TN_H3K4me3_rep2.fastq ChIP-Seq 719.4 MB link
— TN_Input_rep1.fastq ChIP-Seq 355.2 MB link
— TN_Input_rep2.fastq ChIP-Seq 319.8 MB link
— Memory_ATAC-seq_rep1.fastq OTHER 381.4 MB link
— Memory_ATAC-seq_rep2.fastq OTHER 1.0 GB link
— MP_ATAC-seq_rep1.fastq OTHER 684.1 MB link
— MP_ATAC-seq_rep2.fastq OTHER 622.3 MB link
— SRR4437318 OTHER 622.3 MB link
— SRR4437320 OTHER 1.0 GB link
— TE_ATAC-seq_rep1.fastq OTHER 733.3 MB link
— TE_ATAC-seq_rep2.fastq OTHER 649.2 MB link
— TN_ATAC-seq_rep1.fastq OTHER 882.3 MB link
— TN_ATAC-seq_rep2.fastq OTHER 678.1 MB link