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GSE89036

GSE GEO
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Genome-wide maps of H3K27me3 in CD8 T cell subsets

Organism: Mus musculus
Platform: GPL17021
Samples: 8
Experiment Types:
Genome binding/occupancy profiling by high throughput sequencing
Submitted: Oct 21 2016
Last Updated: May 15 2019
Status: Public on Feb 21 2017
Contact: Howard,Y,Chang (Stanford University)

Relations

SubSeries of: GSE95238 BioProject: https://www.ncbi.nlm.nih.gov/bioproject/PRJNA349986 SRA: https://www.ncbi.nlm.nih.gov/sra?term=SRP091924

Summary

To understand epigenetic repression mechanisms underlying CD8 T cell differentiation, we performed ChIP-seq of repressive mark H3K27me3 in CD8 T cell subsets.

Overall Design

Examination of H3K27me3 histone modification in 4 CD8 T cell subsets.

Analysis (3 steps)

View Data Processing
Processing steps for GSE89036
  1. Reads were aligned to mm10 by BWA
  2. Reads with low quality (MAPQ < 30) were filtered out.
  3. If multiple reads were mapped to the exact same location, only one read was kept.

Supplementary Files (4)

GSE89036_MP_H3K27me3.bw Download
GSE89036_Memory_H3K27me3.bw Download
GSE89036_TE_H3K27me3.bw Download
GSE89036_TN_H3K27me3.bw Download
GEO Samples (8)
GSM2357737 GSM2357738 GSM2357739 GSM2357740 GSM2357741 GSM2357742 GSM2357743 GSM2357744

Dataset Citations (2)

Early transcriptional and epigenetic regulation of CD8<sup>+</sup> T cell differentiation revealed by single-cell RNA sequencing.
PMID 28218746 · 2017 · Nature immunology
Boyko Kakaradov, Janilyn Arsenio, Christella E Widjaja, Zhaoren He, Stefan Aigner, Patrick J Metz, Bingfei Yu, Ellen J Wehrens, Justine Lopez, Stephanie H Kim, Elina I Zuniga, Ananda W Goldrath, John T Chang, Gene W Yeo
PubMed citation (PMID 28288100)

SRA Experiments (48) and Runs (48)

Total: 30383 MB
SRX2263333 SRP091924 OTHER SINGLE
GSM2357713: TN_ATAC-seq_rep1; Mus musculus; OTHER
Sample: SRS1755799
BioProject: PRJNA349986
BioSample: SAMN05933608
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: naive CD8 T cells
strain: C57BL/6
age: six to seven weeks
tissue: Spleen
Original files (1)
naive CD8 T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR4437313 26741423 1337071150 882.3 TN_ATAC-seq_rep1.fastq, SRR4437313, SRR4437313.sralite SRA
SRX2263334 SRP091924 OTHER SINGLE
GSM2357714: TN_ATAC-seq_rep2; Mus musculus; OTHER
Sample: SRS1755800
BioProject: PRJNA349986
BioSample: SAMN05933607
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: naive CD8 T cells
strain: C57BL/6
age: six to seven weeks
tissue: Spleen
Original files (1)
naive CD8 T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR4437314 20542729 1027136450 678.08 TN_ATAC-seq_rep2.fastq, SRR4437314, SRR4437314.sralite SRA
SRX2263335 SRP091924 OTHER SINGLE
GSM2357715: TE_ATAC-seq_rep1; Mus musculus; OTHER
Sample: SRS1755802
BioProject: PRJNA349986
BioSample: SAMN05933606
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: KLRG1hiIL7Rlo terminal effector CD8 T cells
strain: C57BL/6
age: six to seven weeks
tissue: Spleen
Original files (1)
KLRG1hiIL7Rlo terminal effector CD8 T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR4437315 22183765 1109188250 733.27 TE_ATAC-seq_rep1.fastq, SRR4437315, SRR4437315.sralite SRA
SRX2263336 SRP091924 OTHER SINGLE
GSM2357716: TE_ATAC-seq_rep2; Mus musculus; OTHER
Sample: SRS1755801
BioProject: PRJNA349986
BioSample: SAMN05933605
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: KLRG1hiIL7Rlo terminal effector CD8 T cells
strain: C57BL/6
age: six to seven weeks
tissue: Spleen
Original files (1)
KLRG1hiIL7Rlo terminal effector CD8 T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR4437316 19650404 982520200 649.2 TE_ATAC-seq_rep2.fastq, SRR4437316, SRR4437316.sralite SRA
SRX2263337 SRP091924 OTHER SINGLE
GSM2357717: MP_ATAC-seq_rep1; Mus musculus; OTHER
Sample: SRS1755804
BioProject: PRJNA349986
BioSample: SAMN05933604
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: KLRG1loIL7Rhi memory precursor CD8 T cells
strain: C57BL/6
age: six to seven weeks
tissue: Spleen
Original files (1)
KLRG1loIL7Rhi memory precursor CD8 T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR4437317 20803622 1040181100 684.09 MP_ATAC-seq_rep1.fastq, SRR4437317, SRR4437317.sralite SRA
SRX2263338 SRP091924 OTHER SINGLE
GSM2357718: MP_ATAC-seq_rep2; Mus musculus; OTHER
Sample: SRS1755803
BioProject: PRJNA349986
BioSample: SAMN05933603
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: KLRG1loIL7Rhi memory precursor CD8 T cells
strain: C57BL/6
age: six to seven weeks
tissue: Spleen
Original files (1)
KLRG1loIL7Rhi memory precursor CD8 T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR4437318 18856727 942836350 622.28 MP_ATAC-seq_rep2.fastq, SRR4437318, SRR4437318.sralite SRA
SRX2263339 SRP091924 OTHER SINGLE
GSM2357719: Memory_ATAC-seq_rep1; Mus musculus; OTHER
Sample: SRS1755805
BioProject: PRJNA349986
BioSample: SAMN05933602
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: KLRG1loIL7Rhi memory CD8 T cells
strain: C57BL/6
age: six to seven weeks
tissue: Spleen
Original files (1)
KLRG1loIL7Rhi memory CD8 T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR4437319 11537763 576888150 381.38 Memory_ATAC-seq_rep1.fastq, SRR4437319, SRR4437319.sralite SRA
SRX2263340 SRP091924 OTHER SINGLE
GSM2357720: Memory_ATAC-seq_rep2; Mus musculus; OTHER
Sample: SRS1755806
BioProject: PRJNA349986
BioSample: SAMN05933601
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: KLRG1loIL7Rhi memory CD8 T cells
strain: C57BL/6
age: six to seven weeks
tissue: Spleen
Original files (1)
KLRG1loIL7Rhi memory CD8 T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR4437320 32417837 1620891850 1073.05 Memory_ATAC-seq_rep2.fastq, SRR4437320, SRR4437320.sralite SRA
SRX2263341 SRP091924 ChIP-Seq SINGLE
GSM2357721: TN_H3K4me3_rep1; Mus musculus; ChIP-Seq
Sample: SRS1755807
BioProject: PRJNA349986
BioSample: SAMN05933600
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: naive CD8 T cells
strain: C57BL/6
age: six to seven weeks
tissue: Spleen
Original files (1)
naive CD8 T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR4437321 46262495 2313124750 991.89 TN_H3K4me3_rep1.fastq, SRR4437321, SRR4437321.sralite SRA
SRX2263342 SRP091924 ChIP-Seq SINGLE
GSM2357722: TN_H3K4me3_rep2; Mus musculus; ChIP-Seq
Sample: SRS1755808
BioProject: PRJNA349986
BioSample: SAMN05933599
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: naive CD8 T cells
strain: C57BL/6
age: six to seven weeks
tissue: Spleen
Original files (1)
naive CD8 T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR4437322 33572925 1678646250 719.44 TN_H3K4me3_rep2.fastq, SRR4437322, SRR4437322.sralite SRA
SRX2263343 SRP091924 ChIP-Seq SINGLE
GSM2357723: TE_H3K4me3_rep1; Mus musculus; ChIP-Seq
Sample: SRS1755809
BioProject: PRJNA349986
BioSample: SAMN05933598
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: KLRG1hiIL7Rlo terminal effector CD8 T cells
strain: C57BL/6
age: six to seven weeks
tissue: Spleen
Original files (1)
KLRG1hiIL7Rlo terminal effector CD8 T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR4437323 15400892 770044600 430.46 TE_H3K4me3_rep1.fastq, SRR4437323, SRR4437323.sralite SRA
SRX2263344 SRP091924 ChIP-Seq SINGLE
GSM2357724: TE_H3K4me3_rep2; Mus musculus; ChIP-Seq
Sample: SRS1755810
BioProject: PRJNA349986
BioSample: SAMN05933597
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: KLRG1hiIL7Rlo terminal effector CD8 T cells
strain: C57BL/6
age: six to seven weeks
tissue: Spleen
Original files (1)
KLRG1hiIL7Rlo terminal effector CD8 T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR4437324 31691826 1584591300 686.9 TE_H3K4me3_rep2.fastq, SRR4437324, SRR4437324.sralite SRA
SRX2263345 SRP091924 ChIP-Seq SINGLE
GSM2357725: MP_H3K4me3_rep1; Mus musculus; ChIP-Seq
Sample: SRS1755811
BioProject: PRJNA349986
BioSample: SAMN05933596
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: KLRG1loIL7Rhi memory precursor CD8 T cells
strain: C57BL/6
age: six to seven weeks
tissue: Spleen
Original files (1)
KLRG1loIL7Rhi memory precursor CD8 T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR4437325 22514628 1125731400 615.83 MP_H3K4me3_rep1.fastq, SRR4437325, SRR4437325.sralite SRA
SRX2263346 SRP091924 ChIP-Seq SINGLE
GSM2357726: MP_H3K4me3_rep2; Mus musculus; ChIP-Seq
Sample: SRS1755812
BioProject: PRJNA349986
BioSample: SAMN05933595
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: KLRG1loIL7Rhi memory precursor CD8 T cells
strain: C57BL/6
age: six to seven weeks
tissue: Spleen
Original files (1)
KLRG1loIL7Rhi memory precursor CD8 T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR4437326 25224006 1261200300 540.4 MP_H3K4me3_rep2.fastq, SRR4437326, SRR4437326.sralite SRA
SRX2263347 SRP091924 ChIP-Seq SINGLE
GSM2357727: Memory_H3K4me3_rep1; Mus musculus; ChIP-Seq
Sample: SRS1755813
BioProject: PRJNA349986
BioSample: SAMN05933594
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: KLRG1loIL7Rhi memory CD8 T cells
strain: C57BL/6
age: six to seven weeks
tissue: Spleen
Original files (1)
KLRG1loIL7Rhi memory CD8 T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR4437327 25909358 1295467900 848.84 Memory_H3K4me3_rep1.fastq, SRR4437327, SRR4437327.sralite SRA
SRX2263348 SRP091924 ChIP-Seq SINGLE
GSM2357728: Memory_H3K4me3_rep2; Mus musculus; ChIP-Seq
Sample: SRS1755814
BioProject: PRJNA349986
BioSample: SAMN05933573
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: KLRG1loIL7Rhi memory CD8 T cells
strain: C57BL/6
age: six to seven weeks
tissue: Spleen
Original files (1)
KLRG1loIL7Rhi memory CD8 T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR4437328 16435074 821753700 266.6 Memory_H3K4me3_rep2.fastq, SRR4437328, SRR4437328.sralite SRA
SRX2263349 SRP091924 ChIP-Seq SINGLE
GSM2357729: TN_H3K4me1_rep1; Mus musculus; ChIP-Seq
Sample: SRS1755815
BioProject: PRJNA349986
BioSample: SAMN05933572
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: naive CD8 T cells
strain: C57BL/6
age: six to seven weeks
tissue: Spleen
Original files (1)
naive CD8 T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR4437329 28430510 1421525500 609.9 TN_H3K4me1_rep1.fastq, SRR4437329, SRR4437329.sralite SRA
SRX2263350 SRP091924 ChIP-Seq SINGLE
GSM2357730: TN_H3K4me1_rep2; Mus musculus; ChIP-Seq
Sample: SRS1755816
BioProject: PRJNA349986
BioSample: SAMN05933619
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: naive CD8 T cells
strain: C57BL/6
age: six to seven weeks
tissue: Spleen
Original files (1)
naive CD8 T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR4437330 27592193 1379609650 727.12 TN_H3K4me1_rep2.fastq, SRR4437330, SRR4437330.sralite SRA
SRX2263351 SRP091924 ChIP-Seq SINGLE
GSM2357731: TE_H3K4me1_rep1; Mus musculus; ChIP-Seq
Sample: SRS1755818
BioProject: PRJNA349986
BioSample: SAMN05933618
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: KLRG1hiIL7Rlo terminal effector CD8 T cells
strain: C57BL/6
age: six to seven weeks
tissue: Spleen
Original files (1)
KLRG1hiIL7Rlo terminal effector CD8 T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR4437331 33526334 1676316700 921.58 TE_H3K4me1_rep1.fastq, SRR4437331, SRR4437331.sralite SRA
SRX2263352 SRP091924 ChIP-Seq SINGLE
GSM2357732: TE_H3K4me1_rep2; Mus musculus; ChIP-Seq
Sample: SRS1755817
BioProject: PRJNA349986
BioSample: SAMN05933617
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: KLRG1hiIL7Rlo terminal effector CD8 T cells
strain: C57BL/6
age: six to seven weeks
tissue: Spleen
Original files (1)
KLRG1hiIL7Rlo terminal effector CD8 T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR4437332 30871872 1543593600 1040.42 TE_H3K4me1_rep2.fastq, SRR4437332, SRR4437332.sralite SRA
SRX2263353 SRP091924 ChIP-Seq SINGLE
GSM2357733: MP_H3K4me1_rep1; Mus musculus; ChIP-Seq
Sample: SRS1755820
BioProject: PRJNA349986
BioSample: SAMN05933616
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: KLRG1loIL7Rhi memory precursor CD8 T cells
strain: C57BL/6
age: six to seven weeks
tissue: Spleen
Original files (1)
KLRG1loIL7Rhi memory precursor CD8 T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR4437333 25989205 1299460250 891.58 MP_H3K4me1_rep1.fastq, SRR4437333, SRR4437333.sralite SRA
SRX2263354 SRP091924 ChIP-Seq SINGLE
GSM2357734: MP_H3K4me1_rep2; Mus musculus; ChIP-Seq
Sample: SRS1755819
BioProject: PRJNA349986
BioSample: SAMN05933615
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: KLRG1loIL7Rhi memory precursor CD8 T cells
strain: C57BL/6
age: six to seven weeks
tissue: Spleen
Original files (1)
KLRG1loIL7Rhi memory precursor CD8 T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR4437334 40052229 2002611450 861.74 MP_H3K4me1_rep2.fastq, SRR4437334, SRR4437334.sralite SRA
SRX2263355 SRP091924 ChIP-Seq SINGLE
GSM2357735: Memory_H3K4me1_rep1; Mus musculus; ChIP-Seq
Sample: SRS1755821
BioProject: PRJNA349986
BioSample: SAMN05933614
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: KLRG1loIL7Rhi memory CD8 T cells
strain: C57BL/6
age: six to seven weeks
tissue: Spleen
Original files (1)
KLRG1loIL7Rhi memory CD8 T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR4437335 34807959 1740397950 1116.17 Memory_H3K4me1_rep1.fastq, SRR4437335, SRR4437335.sralite SRA
SRX2263356 SRP091924 ChIP-Seq SINGLE
GSM2357736: Memory_H3K4me1_rep2; Mus musculus; ChIP-Seq
Sample: SRS1755822
BioProject: PRJNA349986
BioSample: SAMN05933613
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: KLRG1loIL7Rhi memory CD8 T cells
strain: C57BL/6
age: six to seven weeks
tissue: Spleen
Original files (1)
KLRG1loIL7Rhi memory CD8 T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR4437336 21119917 1055995850 343.62 Memory_H3K4me1_rep2.fastq, SRR4437336, SRR4437336.sralite SRA
SRX2263357 SRP091924 ChIP-Seq SINGLE
GSM2357737: TN_H3K27me3_rep1; Mus musculus; ChIP-Seq
Sample: SRS1755823
BioProject: PRJNA349986
BioSample: SAMN05933612
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: naive CD8 T cells
strain: C57BL/6
age: six to seven weeks
tissue: Spleen
Original files (1)
naive CD8 T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR4437337 12663733 633186650 348.76 TN_H3K27me3_rep1.fastq.gz, SRR4437337, SRR4437337.sralite SRA
SRX2263358 SRP091924 ChIP-Seq SINGLE
GSM2357738: TN_H3K27me3_rep2; Mus musculus; ChIP-Seq
Sample: SRS1755825
BioProject: PRJNA349986
BioSample: SAMN05933611
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: naive CD8 T cells
strain: C57BL/6
age: six to seven weeks
tissue: Spleen
Original files (1)
naive CD8 T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR4437338 11791027 589551350 319.94 TN_H3K27me3_rep2.fastq.gz, SRR4437338, SRR4437338.sralite SRA
SRX2263359 SRP091924 ChIP-Seq SINGLE
GSM2357739: TE_H3K27me3_rep1; Mus musculus; ChIP-Seq
Sample: SRS1755824
BioProject: PRJNA349986
BioSample: SAMN05933610
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: KLRG1hiIL7Rlo terminal effector CD8 T cells
strain: C57BL/6
age: six to seven weeks
tissue: Spleen
Original files (1)
KLRG1hiIL7Rlo terminal effector CD8 T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR4437339 38371878 1918593900 1050.02 TE_H3K27me3_rep1.fastq.gz, SRR4437339, SRR4437339.sralite SRA
SRX2263360 SRP091924 ChIP-Seq SINGLE
GSM2357740: TE_H3K27me3_rep2; Mus musculus; ChIP-Seq
Sample: SRS1755826
BioProject: PRJNA349986
BioSample: SAMN05933609
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: KLRG1hiIL7Rlo terminal effector CD8 T cells
strain: C57BL/6
age: six to seven weeks
tissue: Spleen
Original files (1)
KLRG1hiIL7Rlo terminal effector CD8 T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR4437340 8767775 438388750 239.57 TE_H3K27me3_rep2.fastq.gz, SRR4437340, SRR4437340.sralite SRA
SRX2263361 SRP091924 ChIP-Seq SINGLE
GSM2357741: MP_H3K27me3_rep1; Mus musculus; ChIP-Seq
Sample: SRS1755828
BioProject: PRJNA349986
BioSample: SAMN05933593
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: KLRG1loIL7Rhi memory precursor CD8 T cells
strain: C57BL/6
age: six to seven weeks
tissue: Spleen
Original files (1)
KLRG1loIL7Rhi memory precursor CD8 T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR4437341 15404929 770246450 420.01 MP_H3K27me3_rep1.fastq.gz, SRR4437341, SRR4437341.sralite SRA
SRX2263362 SRP091924 ChIP-Seq SINGLE
GSM2357742: MP_H3K27me3_rep2; Mus musculus; ChIP-Seq
Sample: SRS1755829
BioProject: PRJNA349986
BioSample: SAMN05933592
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: KLRG1loIL7Rhi memory precursor CD8 T cells
strain: C57BL/6
age: six to seven weeks
tissue: Spleen
Original files (1)
KLRG1loIL7Rhi memory precursor CD8 T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR4437342 14558192 727909600 394.25 MP_H3K27me3_rep2.fastq.gz, SRR4437342, SRR4437342.sralite SRA
SRX2263363 SRP091924 ChIP-Seq SINGLE
GSM2357743: Memory_H3K27me3_rep1; Mus musculus; ChIP-Seq
Sample: SRS1755827
BioProject: PRJNA349986
BioSample: SAMN05933591
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: KLRG1loIL7Rhi memory CD8 T cells
strain: C57BL/6
age: six to seven weeks
tissue: Spleen
Original files (1)
KLRG1loIL7Rhi memory CD8 T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR4437343 27525845 1376292250 875.18 Memory_H3K27me3_rep1.fastq.gz, SRR4437343, SRR4437343.sralite SRA
SRX2263364 SRP091924 ChIP-Seq SINGLE
GSM2357744: Memory_H3K27me3_rep2; Mus musculus; ChIP-Seq
Sample: SRS1755830
BioProject: PRJNA349986
BioSample: SAMN05933590
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: KLRG1loIL7Rhi memory CD8 T cells
strain: C57BL/6
age: six to seven weeks
tissue: Spleen
Original files (1)
KLRG1loIL7Rhi memory CD8 T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR4437344 17196195 859809750 280.5 Memory_H3K27me3_rep2.fastq.gz, SRR4437344, SRR4437344.sralite SRA
SRX2263365 SRP091924 ChIP-Seq SINGLE
GSM2357745: TN_H3K27ac_rep1; Mus musculus; ChIP-Seq
Sample: SRS1755833
BioProject: PRJNA349986
BioSample: SAMN05933589
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: naive CD8 T cells
strain: C57BL/6
age: six to seven weeks
tissue: Spleen
Original files (1)
naive CD8 T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR4437345 26883088 1344154400 730.01 TN_H3K27ac_rep1.fastq, SRR4437345, SRR4437345.sralite SRA
SRX2263366 SRP091924 ChIP-Seq SINGLE
GSM2357746: TN_H3K27ac_rep2; Mus musculus; ChIP-Seq
Sample: SRS1755831
BioProject: PRJNA349986
BioSample: SAMN05933588
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: naive CD8 T cells
strain: C57BL/6
age: six to seven weeks
tissue: Spleen
Original files (1)
naive CD8 T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR4437346 16039187 801959350 432.8 TN_H3K27ac_rep2.fastq, SRR4437346, SRR4437346.sralite SRA
SRX2263367 SRP091924 ChIP-Seq SINGLE
GSM2357747: TE_H3K27ac_rep1; Mus musculus; ChIP-Seq
Sample: SRS1755832
BioProject: PRJNA349986
BioSample: SAMN05933587
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: KLRG1hiIL7Rlo terminal effector CD8 T cells
strain: C57BL/6
age: six to seven weeks
tissue: Spleen
Original files (1)
KLRG1hiIL7Rlo terminal effector CD8 T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR4437347 20159315 1007965750 669.78 TE_H3K27ac_rep1.fastq, SRR4437347, SRR4437347.sralite SRA
SRX2263368 SRP091924 ChIP-Seq SINGLE
GSM2357748: TE_H3K27ac_rep2; Mus musculus; ChIP-Seq
Sample: SRS1755834
BioProject: PRJNA349986
BioSample: SAMN05933586
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: KLRG1hiIL7Rlo terminal effector CD8 T cells
strain: C57BL/6
age: six to seven weeks
tissue: Spleen
Original files (1)
KLRG1hiIL7Rlo terminal effector CD8 T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR4437348 15236332 761816600 323.95 TE_H3K27ac_rep2.fastq, SRR4437348, SRR4437348.sralite SRA
SRX2263369 SRP091924 ChIP-Seq SINGLE
GSM2357749: MP_H3K27ac_rep1; Mus musculus; ChIP-Seq
Sample: SRS1755835
BioProject: PRJNA349986
BioSample: SAMN05933585
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: KLRG1loIL7Rhi memory precursor CD8 T cells
strain: C57BL/6
age: six to seven weeks
tissue: Spleen
Original files (1)
KLRG1loIL7Rhi memory precursor CD8 T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR4437349 26129267 1306463350 708.3 MP_H3K27ac_rep1.fastq, SRR4437349, SRR4437349.sralite SRA
SRX2263370 SRP091924 ChIP-Seq SINGLE
GSM2357750: MP_H3K27ac_rep2; Mus musculus; ChIP-Seq
Sample: SRS1755836
BioProject: PRJNA349986
BioSample: SAMN05933584
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: KLRG1loIL7Rhi memory precursor CD8 T cells
strain: C57BL/6
age: six to seven weeks
tissue: Spleen
Original files (1)
KLRG1loIL7Rhi memory precursor CD8 T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR4437350 20831757 1041587850 691.19 MP_H3K27ac_rep2.fastq, SRR4437350, SRR4437350.sralite SRA
SRX2263371 SRP091924 ChIP-Seq SINGLE
GSM2357751: Memory_H3K27ac_rep1; Mus musculus; ChIP-Seq
Sample: SRS1755838
BioProject: PRJNA349986
BioSample: SAMN05933583
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: KLRG1loIL7Rhi memory CD8 T cells
strain: C57BL/6
age: six to seven weeks
tissue: Spleen
Original files (1)
KLRG1loIL7Rhi memory CD8 T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR4437351 29446953 1472347650 969.68 Memory_H3K27ac_rep1.fastq, SRR4437351, SRR4437351.sralite SRA
SRX2263372 SRP091924 ChIP-Seq SINGLE
GSM2357752: Memory_H3K27ac_rep2; Mus musculus; ChIP-Seq
Sample: SRS1755837
BioProject: PRJNA349986
BioSample: SAMN05933582
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: KLRG1loIL7Rhi memory CD8 T cells
strain: C57BL/6
age: six to seven weeks
tissue: Spleen
Original files (1)
KLRG1loIL7Rhi memory CD8 T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR4437352 20144233 1007211650 326.1 Memory_H3K27ac_rep2.fastq, SRR4437352, SRR4437352.sralite SRA
SRX2263373 SRP091924 ChIP-Seq SINGLE
GSM2357753: TN_Input_rep1; Mus musculus; ChIP-Seq
Sample: SRS1755839
BioProject: PRJNA349986
BioSample: SAMN05933581
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: naive CD8 T cells
strain: C57BL/6
age: six to seven weeks
tissue: Spleen
Original files (1)
naive CD8 T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR4437353 12401697 620084850 355.16 TN_Input_rep1.fastq, SRR4437353, SRR4437353.sralite SRA
SRX2263374 SRP091924 ChIP-Seq SINGLE
GSM2357754: TN_Input_rep2; Mus musculus; ChIP-Seq
Sample: SRS1755840
BioProject: PRJNA349986
BioSample: SAMN05933580
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: naive CD8 T cells
strain: C57BL/6
age: six to seven weeks
tissue: Spleen
Original files (1)
naive CD8 T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR4437354 10478129 523906450 319.78 TN_Input_rep2.fastq, SRR4437354, SRR4437354.sralite SRA
SRX2263375 SRP091924 ChIP-Seq SINGLE
GSM2357755: TE_Input_rep1; Mus musculus; ChIP-Seq
Sample: SRS1755841
BioProject: PRJNA349986
BioSample: SAMN05933579
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: KLRG1hiIL7Rlo terminal effector CD8 T cells
strain: C57BL/6
age: six to seven weeks
tissue: Spleen
Original files (1)
KLRG1hiIL7Rlo terminal effector CD8 T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR4437355 42172067 2108603350 1151.65 TE_Input_rep1.fastq, SRR4437355, SRR4437355.sralite SRA
SRX2263376 SRP091924 ChIP-Seq SINGLE
GSM2357756: TE_Input_rep2; Mus musculus; ChIP-Seq
Sample: SRS1755842
BioProject: PRJNA349986
BioSample: SAMN05933578
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: KLRG1hiIL7Rlo terminal effector CD8 T cells
strain: C57BL/6
age: six to seven weeks
tissue: Spleen
Original files (1)
KLRG1hiIL7Rlo terminal effector CD8 T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR4437356 11279019 563950950 346.44 TE_Input_rep2.fastq, SRR4437356, SRR4437356.sralite SRA
SRX2263377 SRP091924 ChIP-Seq SINGLE
GSM2357757: MP_Input_rep1; Mus musculus; ChIP-Seq
Sample: SRS1755844
BioProject: PRJNA349986
BioSample: SAMN05933577
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: KLRG1loIL7Rhi memory precursor CD8 T cells
strain: C57BL/6
age: six to seven weeks
tissue: Spleen
Original files (1)
KLRG1loIL7Rhi memory precursor CD8 T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR4437357 12394792 619739600 355.28 MP_Input_rep1.fastq, SRR4437357, SRR4437357.sralite SRA
SRX2263378 SRP091924 ChIP-Seq SINGLE
GSM2357758: MP_Input_rep2; Mus musculus; ChIP-Seq
Sample: SRS1755843
BioProject: PRJNA349986
BioSample: SAMN05933576
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: KLRG1loIL7Rhi memory precursor CD8 T cells
strain: C57BL/6
age: six to seven weeks
tissue: Spleen
Original files (1)
KLRG1loIL7Rhi memory precursor CD8 T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR4437358 21921114 1096055700 753.36 MP_Input_rep2.fastq, SRR4437358, SRR4437358.sralite SRA
SRX2263379 SRP091924 ChIP-Seq SINGLE
GSM2357759: Memory_Input_rep1; Mus musculus; ChIP-Seq
Sample: SRS1755845
BioProject: PRJNA349986
BioSample: SAMN05933575
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: KLRG1loIL7Rhi memory CD8 T cells
strain: C57BL/6
age: six to seven weeks
tissue: Spleen
Original files (1)
KLRG1loIL7Rhi memory CD8 T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR4437359 18321954 916097700 644.11 Memory_Input_rep1.fastq, SRR4437359, SRR4437359.sralite SRA
SRX2263380 SRP091924 ChIP-Seq SINGLE
GSM2357760: Memory_Input_rep2; Mus musculus; ChIP-Seq
Sample: SRS1755846
BioProject: PRJNA349986
BioSample: SAMN05933574
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: KLRG1loIL7Rhi memory CD8 T cells
strain: C57BL/6
age: six to seven weeks
tissue: Spleen
Original files (1)
KLRG1loIL7Rhi memory CD8 T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR4437360 22357439 1117871950 361.42 Memory_Input_rep2.fastq, SRR4437360, SRR4437360.sralite SRA

Linked Publications (1)

Early transcriptional and epigenetic regulation of CD8<sup>+</sup> T cell differentiation revealed by single-cell RNA sequencing.
Nature immunology · 2017

Potentially Related Publications (1)

This accession was text-mined from the PMC full text of these publications. It may be referenced for comparison or reused from another study rather than generated for them.

Early transcriptional and epigenetic regulation of CD8<sup>+</sup> T cell differentiation revealed by single-cell RNA sequencing.
Nature immunology · 2017

Data Files (102)

Accession File Name Stored Type Output Type Mapping Assembly Size Download
— Memory_H3K27ac_rep1.fastq ChIP-Seq 969.7 MB link
— Memory_H3K27ac_rep2.fastq ChIP-Seq 326.1 MB link
— Memory_H3K27me3_rep1.fastq.gz ChIP-Seq 875.2 MB link
— Memory_H3K27me3_rep2.fastq.gz ChIP-Seq 280.5 MB link
— Memory_H3K4me1_rep1.fastq ChIP-Seq 1.1 GB link
— Memory_H3K4me1_rep2.fastq ChIP-Seq 343.6 MB link
— Memory_H3K4me3_rep1.fastq ChIP-Seq 848.8 MB link
— Memory_H3K4me3_rep2.fastq ChIP-Seq 266.6 MB link
— Memory_Input_rep1.fastq ChIP-Seq 644.1 MB link
— Memory_Input_rep2.fastq ChIP-Seq 361.4 MB link
— MP_H3K27ac_rep1.fastq ChIP-Seq 708.3 MB link
— MP_H3K27ac_rep2.fastq ChIP-Seq 691.2 MB link
— MP_H3K27me3_rep1.fastq.gz ChIP-Seq 420.0 MB link
— MP_H3K27me3_rep2.fastq.gz ChIP-Seq 394.2 MB link
— MP_H3K4me1_rep1.fastq ChIP-Seq 891.6 MB link
— MP_H3K4me1_rep2.fastq ChIP-Seq 861.7 MB link
— MP_H3K4me3_rep1.fastq ChIP-Seq 615.8 MB link
— MP_H3K4me3_rep2.fastq ChIP-Seq 540.4 MB link
— MP_Input_rep1.fastq ChIP-Seq 355.3 MB link
— MP_Input_rep2.fastq ChIP-Seq 753.4 MB link
— SRR4437321_GSM2357721 ChIP-Seq 991.0 MB link
— SRR4437322_GSM2357722 ChIP-Seq 719.0 MB link
— SRR4437323_GSM2357723 ChIP-Seq 430.0 MB link
— SRR4437324_GSM2357724 ChIP-Seq 686.0 MB link
— SRR4437325_GSM2357725 ChIP-Seq 615.0 MB link
— SRR4437326_GSM2357726 ChIP-Seq 540.0 MB link
— SRR4437327_GSM2357727 ChIP-Seq 848.0 MB link
— SRR4437328_GSM2357728 ChIP-Seq 266.0 MB link
— SRR4437329 ChIP-Seq 609.9 MB link
— SRR4437329_GSM2357729 ChIP-Seq 609.0 MB link
— SRR4437330_GSM2357730 ChIP-Seq 727.0 MB link
— SRR4437331_GSM2357731 ChIP-Seq 921.0 MB link
— SRR4437332_GSM2357732 ChIP-Seq 1.0 GB link
— SRR4437333_GSM2357733 ChIP-Seq 891.0 MB link
— SRR4437334_GSM2357734 ChIP-Seq 861.0 MB link
— SRR4437335_GSM2357735 ChIP-Seq 1.1 GB link
— SRR4437336_GSM2357736 ChIP-Seq 343.0 MB link
— SRR4437337_GSM2357737 ChIP-Seq 348.0 MB link
— SRR4437338_GSM2357738 ChIP-Seq 319.0 MB link
— SRR4437339 ChIP-Seq 1.0 GB link
— SRR4437339_GSM2357739 ChIP-Seq 1.0 GB link
— SRR4437340_GSM2357740 ChIP-Seq 239.0 MB link
— SRR4437341 ChIP-Seq 420.0 MB link
— SRR4437341_GSM2357741 ChIP-Seq 420.0 MB link
— SRR4437342 ChIP-Seq 394.2 MB link
— SRR4437342_GSM2357742 ChIP-Seq 394.0 MB link
— SRR4437343_GSM2357743 ChIP-Seq 875.0 MB link
— SRR4437344_GSM2357744 ChIP-Seq 280.0 MB link
— SRR4437345_GSM2357745 ChIP-Seq 730.0 MB link
— SRR4437346_GSM2357746 ChIP-Seq 432.0 MB link
— SRR4437347_GSM2357747 ChIP-Seq 669.0 MB link
— SRR4437348_GSM2357748 ChIP-Seq 323.0 MB link
— SRR4437349_GSM2357749 ChIP-Seq 708.0 MB link
— SRR4437350_GSM2357750 ChIP-Seq 691.0 MB link
— SRR4437351_GSM2357751 ChIP-Seq 969.0 MB link
— SRR4437352_GSM2357752 ChIP-Seq 326.0 MB link
— SRR4437353_GSM2357753 ChIP-Seq 355.0 MB link
— SRR4437354_GSM2357754 ChIP-Seq 319.0 MB link
— SRR4437355_GSM2357755 ChIP-Seq 1.1 GB link
— SRR4437356_GSM2357756 ChIP-Seq 346.0 MB link
— SRR4437357_GSM2357757 ChIP-Seq 355.0 MB link
— SRR4437358_GSM2357758 ChIP-Seq 753.0 MB link
— SRR4437359_GSM2357759 ChIP-Seq 644.0 MB link
— SRR4437360_GSM2357760 ChIP-Seq 361.0 MB link
— TE_H3K27ac_rep1.fastq ChIP-Seq 669.8 MB link
— TE_H3K27ac_rep2.fastq ChIP-Seq 323.9 MB link
— TE_H3K27me3_rep1.fastq.gz ChIP-Seq 1.0 GB link
— TE_H3K27me3_rep2.fastq.gz ChIP-Seq 239.6 MB link
— TE_H3K4me1_rep1.fastq ChIP-Seq 921.6 MB link
— TE_H3K4me1_rep2.fastq ChIP-Seq 1.0 GB link
— TE_H3K4me3_rep1.fastq ChIP-Seq 430.5 MB link
— TE_H3K4me3_rep2.fastq ChIP-Seq 686.9 MB link
— TE_Input_rep1.fastq ChIP-Seq 1.1 GB link
— TE_Input_rep2.fastq ChIP-Seq 346.4 MB link
— TN_H3K27ac_rep1.fastq ChIP-Seq 730.0 MB link
— TN_H3K27ac_rep2.fastq ChIP-Seq 432.8 MB link
— TN_H3K27me3_rep1.fastq.gz ChIP-Seq 348.8 MB link
— TN_H3K27me3_rep2.fastq.gz ChIP-Seq 319.9 MB link
— TN_H3K4me1_rep1.fastq ChIP-Seq 609.9 MB link
— TN_H3K4me1_rep2.fastq ChIP-Seq 727.1 MB link
— TN_H3K4me3_rep1.fastq ChIP-Seq 991.9 MB link
— TN_H3K4me3_rep2.fastq ChIP-Seq 719.4 MB link
— TN_Input_rep1.fastq ChIP-Seq 355.2 MB link
— TN_Input_rep2.fastq ChIP-Seq 319.8 MB link
— Memory_ATAC-seq_rep1.fastq OTHER 381.4 MB link
— Memory_ATAC-seq_rep2.fastq OTHER 1.0 GB link
— MP_ATAC-seq_rep1.fastq OTHER 684.1 MB link
— MP_ATAC-seq_rep2.fastq OTHER 622.3 MB link
— SRR4437313_GSM2357713 OTHER 882.0 MB link
— SRR4437314_GSM2357714 OTHER 678.0 MB link
— SRR4437315_GSM2357715 OTHER 733.0 MB link
— SRR4437316_GSM2357716 OTHER 649.0 MB link
— SRR4437317_GSM2357717 OTHER 684.0 MB link
— SRR4437318 OTHER 622.3 MB link
— SRR4437318_GSM2357718 OTHER 622.0 MB link
— SRR4437319_GSM2357719 OTHER 381.0 MB link
— SRR4437320 OTHER 1.0 GB link
— SRR4437320_GSM2357720 OTHER 1.0 GB link
— TE_ATAC-seq_rep1.fastq OTHER 733.3 MB link
— TE_ATAC-seq_rep2.fastq OTHER 649.2 MB link
— TN_ATAC-seq_rep1.fastq OTHER 882.3 MB link
— TN_ATAC-seq_rep2.fastq OTHER 678.1 MB link