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Early transcriptional and epigenetic regulation of CD8<sup>+</sup> T cell differentiation revealed by single-cell RNA sequencing.

Boyko Kakaradov, Janilyn Arsenio, Christella E Widjaja, Zhaoren He, Stefan Aigner, Patrick J Metz, Bingfei Yu, Ellen J Wehrens, Justine Lopez, Stephanie H Kim, Elina I Zuniga, Ananda W Goldrath, John T Chang, Gene W Yeo

Nature immunology · 2017 · Vol. 18 (4) · pp. 422-432

Abstract

During microbial infection, responding CD8<sup>+</sup> T lymphocytes differentiate into heterogeneous subsets that together provide immediate and durable protection. To elucidate the dynamic transcriptional changes that underlie this process, we applied a single-cell RNA-sequencing approach and analyzed individual CD8<sup>+</sup> T lymphocytes sequentially throughout the course of a viral infection in vivo. Our analyses revealed a striking transcriptional divergence among cells that had undergone their first division and identified previously unknown molecular determinants that controlled the fate specification of CD8<sup>+</sup> T lymphocytes. Our findings suggest a model for the differentiation of terminal effector cells initiated by an early burst of transcriptional activity and subsequently refined by epigenetic silencing of transcripts associated with memory lymphocytes, which highlights the power and necessity of single-cell approaches.

Linked datasets 4

GSE89036 GSE · via ncbi_elink
GEO ↗

Genome-wide maps of H3K27me3 in CD8 T cell subsets

Mus musculus

102 data files
FileTypeSize
Memory_ATAC-seq_rep1.fastq OTHER 381.4 MB
Memory_ATAC-seq_rep2.fastq OTHER 1.0 GB
Memory_H3K27ac_rep1.fastq ChIP-Seq 969.7 MB
Memory_H3K27ac_rep2.fastq ChIP-Seq 326.1 MB
Memory_H3K27me3_rep1.fastq.gz ChIP-Seq 875.2 MB
Memory_H3K27me3_rep2.fastq.gz ChIP-Seq 280.5 MB
Memory_H3K4me1_rep1.fastq ChIP-Seq 1.1 GB
Memory_H3K4me1_rep2.fastq ChIP-Seq 343.6 MB
Memory_H3K4me3_rep1.fastq ChIP-Seq 848.8 MB
Memory_H3K4me3_rep2.fastq ChIP-Seq 266.6 MB
Memory_Input_rep1.fastq ChIP-Seq 644.1 MB
Memory_Input_rep2.fastq ChIP-Seq 361.4 MB
MP_ATAC-seq_rep1.fastq OTHER 684.1 MB
MP_ATAC-seq_rep2.fastq OTHER 622.3 MB
MP_H3K27ac_rep1.fastq ChIP-Seq 708.3 MB
MP_H3K27ac_rep2.fastq ChIP-Seq 691.2 MB
MP_H3K27me3_rep1.fastq.gz ChIP-Seq 420.0 MB
MP_H3K27me3_rep2.fastq.gz ChIP-Seq 394.2 MB
MP_H3K4me1_rep1.fastq ChIP-Seq 891.6 MB
MP_H3K4me1_rep2.fastq ChIP-Seq 861.7 MB
MP_H3K4me3_rep1.fastq ChIP-Seq 615.8 MB
MP_H3K4me3_rep2.fastq ChIP-Seq 540.4 MB
MP_Input_rep1.fastq ChIP-Seq 355.3 MB
MP_Input_rep2.fastq ChIP-Seq 753.4 MB
SRR4437313_GSM2357713 OTHER 882.0 MB
SRR4437314_GSM2357714 OTHER 678.0 MB
SRR4437315_GSM2357715 OTHER 733.0 MB
SRR4437316_GSM2357716 OTHER 649.0 MB
SRR4437317_GSM2357717 OTHER 684.0 MB
SRR4437318 OTHER 622.3 MB
SRR4437318_GSM2357718 OTHER 622.0 MB
SRR4437319_GSM2357719 OTHER 381.0 MB
SRR4437320 OTHER 1.0 GB
SRR4437320_GSM2357720 OTHER 1.0 GB
SRR4437321_GSM2357721 ChIP-Seq 991.0 MB
SRR4437322_GSM2357722 ChIP-Seq 719.0 MB
SRR4437323_GSM2357723 ChIP-Seq 430.0 MB
SRR4437324_GSM2357724 ChIP-Seq 686.0 MB
SRR4437325_GSM2357725 ChIP-Seq 615.0 MB
SRR4437326_GSM2357726 ChIP-Seq 540.0 MB
SRR4437327_GSM2357727 ChIP-Seq 848.0 MB
SRR4437328_GSM2357728 ChIP-Seq 266.0 MB
SRR4437329 ChIP-Seq 609.9 MB
SRR4437329_GSM2357729 ChIP-Seq 609.0 MB
SRR4437330_GSM2357730 ChIP-Seq 727.0 MB
SRR4437331_GSM2357731 ChIP-Seq 921.0 MB
SRR4437332_GSM2357732 ChIP-Seq 1.0 GB
SRR4437333_GSM2357733 ChIP-Seq 891.0 MB
SRR4437334_GSM2357734 ChIP-Seq 861.0 MB
SRR4437335_GSM2357735 ChIP-Seq 1.1 GB
SRR4437336_GSM2357736 ChIP-Seq 343.0 MB
SRR4437337_GSM2357737 ChIP-Seq 348.0 MB
SRR4437338_GSM2357738 ChIP-Seq 319.0 MB
SRR4437339 ChIP-Seq 1.0 GB
SRR4437339_GSM2357739 ChIP-Seq 1.0 GB
SRR4437340_GSM2357740 ChIP-Seq 239.0 MB
SRR4437341 ChIP-Seq 420.0 MB
SRR4437341_GSM2357741 ChIP-Seq 420.0 MB
SRR4437342 ChIP-Seq 394.2 MB
SRR4437342_GSM2357742 ChIP-Seq 394.0 MB
SRR4437343_GSM2357743 ChIP-Seq 875.0 MB
SRR4437344_GSM2357744 ChIP-Seq 280.0 MB
SRR4437345_GSM2357745 ChIP-Seq 730.0 MB
SRR4437346_GSM2357746 ChIP-Seq 432.0 MB
SRR4437347_GSM2357747 ChIP-Seq 669.0 MB
SRR4437348_GSM2357748 ChIP-Seq 323.0 MB
SRR4437349_GSM2357749 ChIP-Seq 708.0 MB
SRR4437350_GSM2357750 ChIP-Seq 691.0 MB
SRR4437351_GSM2357751 ChIP-Seq 969.0 MB
SRR4437352_GSM2357752 ChIP-Seq 326.0 MB
SRR4437353_GSM2357753 ChIP-Seq 355.0 MB
SRR4437354_GSM2357754 ChIP-Seq 319.0 MB
SRR4437355_GSM2357755 ChIP-Seq 1.1 GB
SRR4437356_GSM2357756 ChIP-Seq 346.0 MB
SRR4437357_GSM2357757 ChIP-Seq 355.0 MB
SRR4437358_GSM2357758 ChIP-Seq 753.0 MB
SRR4437359_GSM2357759 ChIP-Seq 644.0 MB
SRR4437360_GSM2357760 ChIP-Seq 361.0 MB
TE_ATAC-seq_rep1.fastq OTHER 733.3 MB
TE_ATAC-seq_rep2.fastq OTHER 649.2 MB
TE_H3K27ac_rep1.fastq ChIP-Seq 669.8 MB
TE_H3K27ac_rep2.fastq ChIP-Seq 323.9 MB
TE_H3K27me3_rep1.fastq.gz ChIP-Seq 1.0 GB
TE_H3K27me3_rep2.fastq.gz ChIP-Seq 239.6 MB
TE_H3K4me1_rep1.fastq ChIP-Seq 921.6 MB
TE_H3K4me1_rep2.fastq ChIP-Seq 1.0 GB
TE_H3K4me3_rep1.fastq ChIP-Seq 430.5 MB
TE_H3K4me3_rep2.fastq ChIP-Seq 686.9 MB
TE_Input_rep1.fastq ChIP-Seq 1.1 GB
TE_Input_rep2.fastq ChIP-Seq 346.4 MB
TN_ATAC-seq_rep1.fastq OTHER 882.3 MB
TN_ATAC-seq_rep2.fastq OTHER 678.1 MB
TN_H3K27ac_rep1.fastq ChIP-Seq 730.0 MB
TN_H3K27ac_rep2.fastq ChIP-Seq 432.8 MB
TN_H3K27me3_rep1.fastq.gz ChIP-Seq 348.8 MB
TN_H3K27me3_rep2.fastq.gz ChIP-Seq 319.9 MB
TN_H3K4me1_rep1.fastq ChIP-Seq 609.9 MB
TN_H3K4me1_rep2.fastq ChIP-Seq 727.1 MB
TN_H3K4me3_rep1.fastq ChIP-Seq 991.9 MB
TN_H3K4me3_rep2.fastq ChIP-Seq 719.4 MB
TN_Input_rep1.fastq ChIP-Seq 355.2 MB
TN_Input_rep2.fastq ChIP-Seq 319.8 MB
GSE89405 GSE · via ncbi_elink
GEO ↗

Early transcriptional and epigenetic regulation of CD8+ T cell differentiation revealed by single-cell RNA-seq

Mus musculus

608 data files
FileTypeSize
1A10_CGAGGCTG_L001_R1.fastq.gz RNA-Seq 791.9 MB
1A11_AAGAGGCA_L001_R1.fastq.gz RNA-Seq 613.7 MB
1A12_GTAGAGGA_L001_R1.fastq.gz RNA-Seq 4.6 GB
1A1_TAAGGCGA_L001_R1.fastq.gz RNA-Seq 666.2 MB
1A2_CGTACTAG_L001_R1.fastq.gz RNA-Seq 1.2 GB
1A3_AGGCAGAA_L001_R1.fastq.gz RNA-Seq 1.7 GB
1A4_TCCTGAGC_L001_R1.fastq.gz RNA-Seq 1.0 GB
1A5_GGACTCCT_L001_R1.fastq.gz RNA-Seq 1.9 GB
1A6_TAGGCATG_L001_R1.fastq.gz RNA-Seq 1.1 GB
1A7_CTCTCTAC_L001_R1.fastq.gz RNA-Seq 1.3 GB
1A8_CAGAGAGG_L001_R1.fastq.gz RNA-Seq 1.2 GB
1A9_GCTACGCT_L001_R1.fastq.gz RNA-Seq 2.3 GB
1B10_CGAGGCTG_L002_R1.fastq.gz RNA-Seq 517.5 MB
1B11_AAGAGGCA_L002_R1.fastq.gz RNA-Seq 1.6 GB
1B12_GTAGAGGA_L002_R1.fastq.gz RNA-Seq 1.2 GB
1B1_TAAGGCGA_L002_R1.fastq.gz RNA-Seq 497.4 MB
1B2_CGTACTAG_L002_R1.fastq.gz RNA-Seq 1.8 GB
1B3_AGGCAGAA_L002_R1.fastq.gz RNA-Seq 1.9 GB
1B4_TCCTGAGC_L002_R1.fastq.gz RNA-Seq 1.6 GB
1B5_GGACTCCT_L002_R1.fastq.gz RNA-Seq 2.1 GB
1B6_TAGGCATG_L002_R1.fastq.gz RNA-Seq 2.2 GB
1B7_CTCTCTAC_L002_R1.fastq.gz RNA-Seq 1.9 GB
1B8_CAGAGAGG_L002_R1.fastq.gz RNA-Seq 610.2 MB
1B9_GCTACGCT_L002_R1.fastq.gz RNA-Seq 2.1 GB
1C10_CGAGGCTG_L003_R1.fastq.gz RNA-Seq 726.3 MB
1C11_AAGAGGCA_L003_R1.fastq.gz RNA-Seq 2.0 GB
1C12_GTAGAGGA_L003_R1.fastq.gz RNA-Seq 862.5 MB
1C1_TAAGGCGA_L003_R1.fastq.gz RNA-Seq 923.7 MB
1C2_CGTACTAG_L003_R1.fastq.gz RNA-Seq 581.0 MB
1C3_AGGCAGAA_L003_R1.fastq.gz RNA-Seq 776.7 MB
1C4_TCCTGAGC_L003_R1.fastq.gz RNA-Seq 1.3 GB
1C5_GGACTCCT_L003_R1.fastq.gz RNA-Seq 1.6 GB
1C6_TAGGCATG_L003_R1.fastq.gz RNA-Seq 1.3 GB
1C7_CTCTCTAC_L003_R1.fastq.gz RNA-Seq 1.7 GB
1C8_CAGAGAGG_L003_R1.fastq.gz RNA-Seq 2.9 GB
1C9_GCTACGCT_L003_R1.fastq.gz RNA-Seq 1.8 GB
1D10_CGAGGCTG_L004_R1.fastq.gz RNA-Seq 1.1 GB
1D11_AAGAGGCA_L004_R1.fastq.gz RNA-Seq 2.1 GB
1D12_GTAGAGGA_L004_R1.fastq.gz RNA-Seq 1.5 GB
1D1_TAAGGCGA_L004_R1.fastq.gz RNA-Seq 1.7 GB
1D2_CGTACTAG_L004_R1.fastq.gz RNA-Seq 1.6 GB
1D3_AGGCAGAA_L004_R1.fastq.gz RNA-Seq 1.7 GB
1D4_TCCTGAGC_L004_R1.fastq.gz RNA-Seq 1.8 GB
1D5_GGACTCCT_L004_R1.fastq.gz RNA-Seq 1.6 GB
1D6_TAGGCATG_L004_R1.fastq.gz RNA-Seq 502.5 MB
1D7_CTCTCTAC_L004_R1.fastq.gz RNA-Seq 1.6 GB
1D8_CAGAGAGG_L004_R1.fastq.gz RNA-Seq 1.4 GB
1D9_GCTACGCT_L004_R1.fastq.gz RNA-Seq 1.0 GB
1E10_CGAGGCTG_L005_R1.fastq.gz RNA-Seq 1023.6 MB
1E11_AAGAGGCA_L005_R1.fastq.gz RNA-Seq 2.9 GB
1E12_GTAGAGGA_L005_R1.fastq.gz RNA-Seq 1.9 GB
1E1_TAAGGCGA_L005_R1.fastq.gz RNA-Seq 1.2 GB
1E2_CGTACTAG_L005_R1.fastq.gz RNA-Seq 661.6 MB
1E3_AGGCAGAA_L005_R1.fastq.gz RNA-Seq 1.9 GB
1E4_TCCTGAGC_L005_R1.fastq.gz RNA-Seq 1.8 GB
1E5_GGACTCCT_L005_R1.fastq.gz RNA-Seq 1.3 GB
1E6_TAGGCATG_L005_R1.fastq.gz RNA-Seq 2.4 GB
1E7_CTCTCTAC_L005_R1.fastq.gz RNA-Seq 2.1 GB
1E8_CAGAGAGG_L005_R1.fastq.gz RNA-Seq 462.1 MB
1E9_GCTACGCT_L005_R1.fastq.gz RNA-Seq 1.6 GB
1F10_CGAGGCTG_L006_R1.fastq.gz RNA-Seq 1.7 GB
1F11_AAGAGGCA_L006_R1.fastq.gz RNA-Seq 2.2 GB
1F12_GTAGAGGA_L006_R1.fastq.gz RNA-Seq 653.4 MB
1F1_TAAGGCGA_L006_R1.fastq.gz RNA-Seq 1.1 GB
1F2_CGTACTAG_L006_R1.fastq.gz RNA-Seq 383.9 MB
1F3_AGGCAGAA_L006_R1.fastq.gz RNA-Seq 2.6 GB
1F4_TCCTGAGC_L006_R1.fastq.gz RNA-Seq 814.4 MB
1F5_GGACTCCT_L006_R1.fastq.gz RNA-Seq 1.8 GB
1F6_TAGGCATG_L006_R1.fastq.gz RNA-Seq 1.8 GB
1F7_CTCTCTAC_L006_R1.fastq.gz RNA-Seq 1.9 GB
1F8_CAGAGAGG_L006_R1.fastq.gz RNA-Seq 711.6 MB
1F9_GCTACGCT_L006_R1.fastq.gz RNA-Seq 1.8 GB
1G10_CGAGGCTG_L007_R1.fastq.gz RNA-Seq 757.2 MB
1G11_AAGAGGCA_L007_R1.fastq.gz RNA-Seq 1.9 GB
1G12_GTAGAGGA_L007_R1.fastq.gz RNA-Seq 610.3 MB
1G1_TAAGGCGA_L007_R1.fastq.gz RNA-Seq 1.5 GB
1G2_CGTACTAG_L007_R1.fastq.gz RNA-Seq 857.3 MB
1G3_AGGCAGAA_L007_R1.fastq.gz RNA-Seq 2.0 GB
1G4_TCCTGAGC_L007_R1.fastq.gz RNA-Seq 1.7 GB
1G5_GGACTCCT_L007_R1.fastq.gz RNA-Seq 1.7 GB
1G6_TAGGCATG_L007_R1.fastq.gz RNA-Seq 1.3 GB
1G7_CTCTCTAC_L007_R1.fastq.gz RNA-Seq 2.6 GB
1G8_CAGAGAGG_L007_R1.fastq.gz RNA-Seq 616.4 MB
1G9_GCTACGCT_L007_R1.fastq.gz RNA-Seq 2.6 GB
1H10_CGAGGCTG_L008_R1.fastq.gz RNA-Seq 925.1 MB
1H11_AAGAGGCA_L008_R1.fastq.gz RNA-Seq 1.3 GB
1H12_GTAGAGGA_L008_R1.fastq.gz RNA-Seq 1.1 GB
1H1_TAAGGCGA_L008_R1.fastq.gz RNA-Seq 1.4 GB
1H2_CGTACTAG_L008_R1.fastq.gz RNA-Seq 435.4 MB
1H3_AGGCAGAA_L008_R1.fastq.gz RNA-Seq 158.9 MB
1H4_TCCTGAGC_L008_R1.fastq.gz RNA-Seq 733.2 MB
1H5_GGACTCCT_L008_R1.fastq.gz RNA-Seq 1.5 GB
1H6_TAGGCATG_L008_R1.fastq.gz RNA-Seq 524.7 MB
1H7_CTCTCTAC_L008_R1.fastq.gz RNA-Seq 1.2 GB
1H8_CAGAGAGG_L008_R1.fastq.gz RNA-Seq 1.3 GB
1H9_GCTACGCT_L008_R1.fastq.gz RNA-Seq 1.6 GB
2A10_CGAGGCTG_L001_R1.fastq.gz RNA-Seq 887.3 MB
2A11_AAGAGGCA_L001_R1.fastq.gz RNA-Seq 949.5 MB
2A12_GTAGAGGA_L001_R1.fastq.gz RNA-Seq 957.1 MB
2A1_TAAGGCGA_L001_R1.fastq.gz RNA-Seq 948.5 MB
2A2_CGTACTAG_L001_R1.fastq.gz RNA-Seq 700.3 MB
2A3_AGGCAGAA_L001_R1.fastq.gz RNA-Seq 2.0 GB
2A4_TCCTGAGC_L001_R1.fastq.gz RNA-Seq 753.6 MB
2A5_GGACTCCT_L001_R1.fastq.gz RNA-Seq 1.4 GB
2A6_TAGGCATG_L001_R1.fastq.gz RNA-Seq 940.2 MB
2A7_CTCTCTAC_L001_R1.fastq.gz RNA-Seq 1.0 GB
2A8_CAGAGAGG_L001_R1.fastq.gz RNA-Seq 1.5 GB
2A9_GCTACGCT_L001_R1.fastq.gz RNA-Seq 1.0 GB
2B10_CGAGGCTG_L002_R1.fastq.gz RNA-Seq 877.3 MB
2B11_AAGAGGCA_L002_R1.fastq.gz RNA-Seq 764.0 MB
2B12_GTAGAGGA_L002_R1.fastq.gz RNA-Seq 1.3 GB
2B1_TAAGGCGA_L002_R1.fastq.gz RNA-Seq 1.3 GB
2B2_CGTACTAG_L002_R1.fastq.gz RNA-Seq 310.3 MB
2B3_AGGCAGAA_L002_R1.fastq.gz RNA-Seq 1.4 GB
2B4_TCCTGAGC_L002_R1.fastq.gz RNA-Seq 1.4 GB
2B5_GGACTCCT_L002_R1.fastq.gz RNA-Seq 2.2 GB
2B6_TAGGCATG_L002_R1.fastq.gz RNA-Seq 759.1 MB
2B7_CTCTCTAC_L002_R1.fastq.gz RNA-Seq 1020.7 MB
2B8_CAGAGAGG_L002_R1.fastq.gz RNA-Seq 717.9 MB
2B9_GCTACGCT_L002_R1.fastq.gz RNA-Seq 1.5 GB
2C10_CGAGGCTG_L003_R1.fastq.gz RNA-Seq 1.2 GB
2C11_AAGAGGCA_L003_R1.fastq.gz RNA-Seq 848.8 MB
2C12_GTAGAGGA_L003_R1.fastq.gz RNA-Seq 1.3 GB
2C1_TAAGGCGA_L003_R1.fastq.gz RNA-Seq 776.2 MB
2C2_CGTACTAG_L003_R1.fastq.gz RNA-Seq 488.7 MB
2C3_AGGCAGAA_L003_R1.fastq.gz RNA-Seq 1.9 GB
2C4_TCCTGAGC_L003_R1.fastq.gz RNA-Seq 655.7 MB
2C5_GGACTCCT_L003_R1.fastq.gz RNA-Seq 1.5 GB
2C6_TAGGCATG_L003_R1.fastq.gz RNA-Seq 1.7 GB
2C7_CTCTCTAC_L003_R1.fastq.gz RNA-Seq 1.0 GB
2C8_CAGAGAGG_L003_R1.fastq.gz RNA-Seq 1.3 GB
2C9_GCTACGCT_L003_R1.fastq.gz RNA-Seq 1.1 GB
2D10_CGAGGCTG_L004_R1.fastq.gz RNA-Seq 752.4 MB
2D11_AAGAGGCA_L004_R1.fastq.gz RNA-Seq 674.8 MB
2D12_GTAGAGGA_L004_R1.fastq.gz RNA-Seq 1.3 GB
2D1_TAAGGCGA_L004_R1.fastq.gz RNA-Seq 622.8 MB
2D2_CGTACTAG_L004_R1.fastq.gz RNA-Seq 634.8 MB
2D3_AGGCAGAA_L004_R1.fastq.gz RNA-Seq 1.2 GB
2D4_TCCTGAGC_L004_R1.fastq.gz RNA-Seq 1.2 GB
2D5_GGACTCCT_L004_R1.fastq.gz RNA-Seq 365.7 MB
2D6_TAGGCATG_L004_R1.fastq.gz RNA-Seq 1.1 GB
2D7_CTCTCTAC_L004_R1.fastq.gz RNA-Seq 867.4 MB
2D8_CAGAGAGG_L004_R1.fastq.gz RNA-Seq 1007.2 MB
2D9_GCTACGCT_L004_R1.fastq.gz RNA-Seq 642.9 MB
2E10_CGAGGCTG_L005_R1.fastq.gz RNA-Seq 932.9 MB
2E11_AAGAGGCA_L005_R1.fastq.gz RNA-Seq 757.9 MB
2E12_GTAGAGGA_L005_R1.fastq.gz RNA-Seq 972.9 MB
2E1_TAAGGCGA_L005_R1.fastq.gz RNA-Seq 468.6 MB
2E2_CGTACTAG_L005_R1.fastq.gz RNA-Seq 819.2 MB
2E3_AGGCAGAA_L005_R1.fastq.gz RNA-Seq 1.7 GB
2E4_TCCTGAGC_L005_R1.fastq.gz RNA-Seq 940.4 MB
2E5_GGACTCCT_L005_R1.fastq.gz RNA-Seq 2.0 GB
2E6_TAGGCATG_L005_R1.fastq.gz RNA-Seq 1.2 GB
2E7_CTCTCTAC_L005_R1.fastq.gz RNA-Seq 1.1 GB
2E8_CAGAGAGG_L005_R1.fastq.gz RNA-Seq 1.1 GB
2E9_GCTACGCT_L005_R1.fastq.gz RNA-Seq 1.5 GB
2F10_CGAGGCTG_L006_R1.fastq.gz RNA-Seq 605.5 MB
2F11_AAGAGGCA_L006_R1.fastq.gz RNA-Seq 1.3 GB
2F12_GTAGAGGA_L006_R1.fastq.gz RNA-Seq 1.2 GB
2F1_TAAGGCGA_L006_R1.fastq.gz RNA-Seq 1.2 GB
2F2_CGTACTAG_L006_R1.fastq.gz RNA-Seq 1.0 GB
2F3_AGGCAGAA_L006_R1.fastq.gz RNA-Seq 1.0 GB
2F4_TCCTGAGC_L006_R1.fastq.gz RNA-Seq 1.5 GB
2F5_GGACTCCT_L006_R1.fastq.gz RNA-Seq 329.6 MB
2F6_TAGGCATG_L006_R1.fastq.gz RNA-Seq 1.2 GB
2F7_CTCTCTAC_L006_R1.fastq.gz RNA-Seq 1.2 GB
2F8_CAGAGAGG_L006_R1.fastq.gz RNA-Seq 1.2 GB
2F9_GCTACGCT_L006_R1.fastq.gz RNA-Seq 1.3 GB
2G10_CGAGGCTG_L007_R1.fastq.gz RNA-Seq 1.5 GB
2G11_AAGAGGCA_L007_R1.fastq.gz RNA-Seq 736.7 MB
2G12_GTAGAGGA_L007_R1.fastq.gz RNA-Seq 1.7 GB
2G1_TAAGGCGA_L007_R1.fastq.gz RNA-Seq 571.3 MB
2G2_CGTACTAG_L007_R1.fastq.gz RNA-Seq 392.9 MB
2G3_AGGCAGAA_L007_R1.fastq.gz RNA-Seq 1.6 GB
2G4_TCCTGAGC_L007_R1.fastq.gz RNA-Seq 630.3 MB
2G5_GGACTCCT_L007_R1.fastq.gz RNA-Seq 1.2 GB
2G6_TAGGCATG_L007_R1.fastq.gz RNA-Seq 1.6 GB
2G7_CTCTCTAC_L007_R1.fastq.gz RNA-Seq 1.3 GB
2G8_CAGAGAGG_L007_R1.fastq.gz RNA-Seq 1.2 GB
2G9_GCTACGCT_L007_R1.fastq.gz RNA-Seq 1.3 GB
2H10_CGAGGCTG_L008_R1.fastq.gz RNA-Seq 746.1 MB
2H11_AAGAGGCA_L008_R1.fastq.gz RNA-Seq 916.8 MB
2H12_GTAGAGGA_L008_R1.fastq.gz RNA-Seq 917.0 MB
2H1_TAAGGCGA_L008_R1.fastq.gz RNA-Seq 977.6 MB
2H2_CGTACTAG_L008_R1.fastq.gz RNA-Seq 417.8 MB
2H3_AGGCAGAA_L008_R1.fastq.gz RNA-Seq 1.3 GB
2H4_TCCTGAGC_L008_R1.fastq.gz RNA-Seq 1.3 GB
2H5_GGACTCCT_L008_R1.fastq.gz RNA-Seq 1.6 GB
2H6_TAGGCATG_L008_R1.fastq.gz RNA-Seq 424.0 MB
2H7_CTCTCTAC_L008_R1.fastq.gz RNA-Seq 782.6 MB
2H8_CAGAGAGG_L008_R1.fastq.gz RNA-Seq 1.0 GB
2H9_GCTACGCT_L008_R1.fastq.gz RNA-Seq 2.3 GB
3A10_CGAGGCTG-GCGTAAGA_L001_R1.fastq.gz RNA-Seq 575.3 MB
3A11_AAGAGGCA-GCGTAAGA_L001_R1.fastq.gz RNA-Seq 658.9 MB
3A12_GTAGAGGA-GCGTAAGA_L001_R1.fastq.gz RNA-Seq 599.1 MB
3A1_TAAGGCGA-GCGTAAGA_L001_R1.fastq.gz RNA-Seq 503.0 MB
3A2_CGTACTAG-GCGTAAGA_L001_R1.fastq.gz RNA-Seq 792.6 MB
3A3_AGGCAGAA-GCGTAAGA_L001_R1.fastq.gz RNA-Seq 766.5 MB
3A4_TCCTGAGC-GCGTAAGA_L001_R1.fastq.gz RNA-Seq 205.6 MB
3A5_GGACTCCT-GCGTAAGA_L001_R1.fastq.gz RNA-Seq 526.4 MB
3A6_TAGGCATG-GCGTAAGA_L001_R1.fastq.gz RNA-Seq 769.1 MB
3A7_CTCTCTAC-GCGTAAGA_L001_R1.fastq.gz RNA-Seq 663.6 MB
3A8_CAGAGAGG-GCGTAAGA_L001_R1.fastq.gz RNA-Seq 584.2 MB
3A9_GCTACGCT-GCGTAAGA_L001_R1.fastq.gz RNA-Seq 335.5 MB
3B10_CGAGGCTG-CTCTCTAT_L002_R1.fastq.gz RNA-Seq 729.5 MB
3B11_AAGAGGCA-CTCTCTAT_L002_R1.fastq.gz RNA-Seq 847.3 MB
3B12_GTAGAGGA-CTCTCTAT_L002_R1.fastq.gz RNA-Seq 879.1 MB
3B1_TAAGGCGA-CTCTCTAT_L002_R1.fastq.gz RNA-Seq 793.5 MB
3B2_CGTACTAG-CTCTCTAT_L002_R1.fastq.gz RNA-Seq 732.2 MB
3B3_AGGCAGAA-CTCTCTAT_L002_R1.fastq.gz RNA-Seq 1.3 GB
3B4_TCCTGAGC-CTCTCTAT_L002_R1.fastq.gz RNA-Seq 1.3 GB
3B5_GGACTCCT-CTCTCTAT_L002_R1.fastq.gz RNA-Seq 976.6 MB
3B6_TAGGCATG-CTCTCTAT_L002_R1.fastq.gz RNA-Seq 820.1 MB
3B7_CTCTCTAC-CTCTCTAT_L002_R1.fastq.gz RNA-Seq 920.9 MB
3B8_CAGAGAGG-CTCTCTAT_L002_R1.fastq.gz RNA-Seq 759.1 MB
3B9_GCTACGCT-CTCTCTAT_L002_R1.fastq.gz RNA-Seq 932.8 MB
3C10_CGAGGCTG-TATCCTCT_L003_R1.fastq.gz RNA-Seq 621.1 MB
3C11_AAGAGGCA-TATCCTCT_L003_R1.fastq.gz RNA-Seq 842.9 MB
3C12_GTAGAGGA-TATCCTCT_L003_R1.fastq.gz RNA-Seq 543.8 MB
3C1_TAAGGCGA-TATCCTCT_L003_R1.fastq.gz RNA-Seq 557.6 MB
3C2_CGTACTAG-TATCCTCT_L003_R1.fastq.gz RNA-Seq 692.1 MB
3C3_AGGCAGAA-TATCCTCT_L003_R1.fastq.gz RNA-Seq 1.0 GB
3C4_TCCTGAGC-TATCCTCT_L003_R1.fastq.gz RNA-Seq 650.1 MB
3C5_GGACTCCT-TATCCTCT_L003_R1.fastq.gz RNA-Seq 722.5 MB
3C6_TAGGCATG-TATCCTCT_L003_R1.fastq.gz RNA-Seq 769.3 MB
3C7_CTCTCTAC-TATCCTCT_L003_R1.fastq.gz RNA-Seq 915.0 MB
3C8_CAGAGAGG-TATCCTCT_L003_R1.fastq.gz RNA-Seq 1.6 GB
3C9_GCTACGCT-TATCCTCT_L003_R1.fastq.gz RNA-Seq 688.0 MB
3D10_CGAGGCTG-AGAGTAGA_L004_R1.fastq.gz RNA-Seq 1.1 GB
3D11_AAGAGGCA-AGAGTAGA_L004_R1.fastq.gz RNA-Seq 919.0 MB
3D12_GTAGAGGA-AGAGTAGA_L004_R1.fastq.gz RNA-Seq 751.2 MB
3D1_TAAGGCGA-AGAGTAGA_L004_R1.fastq.gz RNA-Seq 1.3 GB
3D2_CGTACTAG-AGAGTAGA_L004_R1.fastq.gz RNA-Seq 1.5 GB
3D3_AGGCAGAA-AGAGTAGA_L004_R1.fastq.gz RNA-Seq 1.3 GB
3D4_TCCTGAGC-AGAGTAGA_L004_R1.fastq.gz RNA-Seq 1.1 GB
3D5_GGACTCCT-AGAGTAGA_L004_R1.fastq.gz RNA-Seq 649.8 MB
3D6_TAGGCATG-AGAGTAGA_L004_R1.fastq.gz RNA-Seq 1.5 GB
3D7_CTCTCTAC-AGAGTAGA_L004_R1.fastq.gz RNA-Seq 798.2 MB
3D8_CAGAGAGG-AGAGTAGA_L004_R1.fastq.gz RNA-Seq 871.3 MB
3D9_GCTACGCT-AGAGTAGA_L004_R1.fastq.gz RNA-Seq 347.5 MB
3E10_CGAGGCTG-GTAAGGAG_L005_R1.fastq.gz RNA-Seq 692.4 MB
3E11_AAGAGGCA-GTAAGGAG_L005_R1.fastq.gz RNA-Seq 1.0 GB
3E12_GTAGAGGA-GTAAGGAG_L005_R1.fastq.gz RNA-Seq 1.0 GB
3E1_TAAGGCGA-GTAAGGAG_L005_R1.fastq.gz RNA-Seq 941.7 MB
3E2_CGTACTAG-GTAAGGAG_L005_R1.fastq.gz RNA-Seq 765.6 MB
3E3_AGGCAGAA-GTAAGGAG_L005_R1.fastq.gz RNA-Seq 1.2 GB
3E4_TCCTGAGC-GTAAGGAG_L005_R1.fastq.gz RNA-Seq 815.9 MB
3E5_GGACTCCT-GTAAGGAG_L005_R1.fastq.gz RNA-Seq 449.8 MB
3E6_TAGGCATG-GTAAGGAG_L005_R1.fastq.gz RNA-Seq 871.0 MB
3E7_CTCTCTAC-GTAAGGAG_L005_R1.fastq.gz RNA-Seq 689.6 MB
3E8_CAGAGAGG-GTAAGGAG_L005_R1.fastq.gz RNA-Seq 458.9 MB
3E9_GCTACGCT-GTAAGGAG_L005_R1.fastq.gz RNA-Seq 817.8 MB
3F10_CGAGGCTG-ACTGCATA_L006_R1.fastq.gz RNA-Seq 1.2 GB
3F11_AAGAGGCA-ACTGCATA_L006_R1.fastq.gz RNA-Seq 769.4 MB
3F12_GTAGAGGA-ACTGCATA_L006_R1.fastq.gz RNA-Seq 700.4 MB
3F1_TAAGGCGA-ACTGCATA_L006_R1.fastq.gz RNA-Seq 788.5 MB
3F2_CGTACTAG-ACTGCATA_L006_R1.fastq.gz RNA-Seq 1.0 GB
3F3_AGGCAGAA-ACTGCATA_L006_R1.fastq.gz RNA-Seq 951.8 MB
3F4_TCCTGAGC-ACTGCATA_L006_R1.fastq.gz RNA-Seq 779.1 MB
3F5_GGACTCCT-ACTGCATA_L006_R1.fastq.gz RNA-Seq 1.0 GB
3F6_TAGGCATG-ACTGCATA_L006_R1.fastq.gz RNA-Seq 936.1 MB
3F7_CTCTCTAC-ACTGCATA_L006_R1.fastq.gz RNA-Seq 1.1 GB
3F8_CAGAGAGG-ACTGCATA_L006_R1.fastq.gz RNA-Seq 571.0 MB
3F9_GCTACGCT-ACTGCATA_L006_R1.fastq.gz RNA-Seq 691.3 MB
3G10_CGAGGCTG-AAGGAGTA_L007_R1.fastq.gz RNA-Seq 969.8 MB
3G11_AAGAGGCA-AAGGAGTA_L007_R1.fastq.gz RNA-Seq 729.1 MB
3G12_GTAGAGGA-AAGGAGTA_L007_R1.fastq.gz RNA-Seq 714.1 MB
3G1_TAAGGCGA-AAGGAGTA_L007_R1.fastq.gz RNA-Seq 935.6 MB
3G2_CGTACTAG-AAGGAGTA_L007_R1.fastq.gz RNA-Seq 977.8 MB
3G3_AGGCAGAA-AAGGAGTA_L007_R1.fastq.gz RNA-Seq 1.4 GB
3G4_TCCTGAGC-AAGGAGTA_L007_R1.fastq.gz RNA-Seq 394.8 MB
3G5_GGACTCCT-AAGGAGTA_L007_R1.fastq.gz RNA-Seq 611.6 MB
3G6_TAGGCATG-AAGGAGTA_L007_R1.fastq.gz RNA-Seq 717.0 MB
3G7_CTCTCTAC-AAGGAGTA_L007_R1.fastq.gz RNA-Seq 555.0 MB
3G8_CAGAGAGG-AAGGAGTA_L007_R1.fastq.gz RNA-Seq 1.8 GB
3G9_GCTACGCT-AAGGAGTA_L007_R1.fastq.gz RNA-Seq 905.9 MB
3H10_CGAGGCTG-CTAAGCCT_L008_R1.fastq.gz RNA-Seq 565.7 MB
3H11_AAGAGGCA-CTAAGCCT_L008_R1.fastq.gz RNA-Seq 885.3 MB
3H12_GTAGAGGA-CTAAGCCT_L008_R1.fastq.gz RNA-Seq 805.7 MB
3H1_TAAGGCGA-CTAAGCCT_L008_R1.fastq.gz RNA-Seq 680.7 MB
3H2_CGTACTAG-CTAAGCCT_L008_R1.fastq.gz RNA-Seq 831.0 MB
3H3_AGGCAGAA-CTAAGCCT_L008_R1.fastq.gz RNA-Seq 925.3 MB
3H4_TCCTGAGC-CTAAGCCT_L008_R1.fastq.gz RNA-Seq 934.4 MB
3H5_GGACTCCT-CTAAGCCT_L008_R1.fastq.gz RNA-Seq 1005.1 MB
3H6_TAGGCATG-CTAAGCCT_L008_R1.fastq.gz RNA-Seq 379.7 MB
3H7_CTCTCTAC-CTAAGCCT_L008_R1.fastq.gz RNA-Seq 1.0 GB
3H8_CAGAGAGG-CTAAGCCT_L008_R1.fastq.gz RNA-Seq 2.2 GB
3H9_GCTACGCT-CTAAGCCT_L008_R1.fastq.gz RNA-Seq 544.5 MB
CW05_S5_L002_R1_001.fastq.gz RNA-Seq 965.3 MB
CW06_S6_L002_R1_001.fastq.gz RNA-Seq 916.1 MB
CW07_S7_L002_R1_001.fastq.gz RNA-Seq 953.7 MB
CW08_S8_L002_R1_001.fastq.gz RNA-Seq 860.4 MB
H3K27me3_KO1.fastq.gz ChIP-Seq 968.4 MB
H3K27me3_KO2.fastq.gz ChIP-Seq 1.2 GB
H3K27me3_WT1.fastq.gz ChIP-Seq 851.4 MB
H3K27me3_WT2.fastq.gz ChIP-Seq 1.2 GB
Input_KO1.fastq.gz ChIP-Seq 2.1 GB
Input_KO2.fastq.gz ChIP-Seq 1.6 GB
Input_WT1.fastq.gz ChIP-Seq 1.6 GB
Input_WT2.fastq.gz ChIP-Seq 1.8 GB
SAD4EZH3_S31_L008_R1_001.fastq.gz ChIP-Seq 321.6 MB
SAD4H3K3_S33_L008_R1_001.fastq.gz ChIP-Seq 552.9 MB
SAD4INP1_S39_L008_R1_001.fastq.gz ChIP-Seq 325.2 MB
SAD4POL3_S32_L008_R1_001.fastq.gz ChIP-Seq 502.9 MB
SRR4785508_GSM2370654 ChIP-Seq 851.0 MB
SRR4785509_GSM2370655 ChIP-Seq 1.2 GB
SRR4785510_GSM2370656 ChIP-Seq 968.0 MB
SRR4785511_GSM2370657 ChIP-Seq 1.2 GB
SRR4785512_GSM2370658 ChIP-Seq 1.6 GB
SRR4785513_GSM2370659 ChIP-Seq 1.8 GB
SRR4785514_GSM2370660 ChIP-Seq 2.1 GB
SRR4785515_GSM2370661 ChIP-Seq 1.6 GB
SRR4785516_GSM2370662 ChIP-Seq 321.0 MB
SRR4785517_GSM2370663 ChIP-Seq 552.0 MB
SRR4785518_GSM2370664 ChIP-Seq 502.0 MB
SRR4785519_GSM2370665 ChIP-Seq 325.0 MB
SRR4785520_GSM2370666 RNA-Seq 965.0 MB
SRR4785521_GSM2370667 RNA-Seq 916.0 MB
SRR4785522_GSM2370668 RNA-Seq 953.0 MB
SRR4785523_GSM2370669 RNA-Seq 860.0 MB
SRR4785524_GSM2370670 RNA-Seq 791.0 MB
SRR4785525_GSM2370671 RNA-Seq 613.0 MB
SRR4785526_GSM2370672 RNA-Seq 4.6 GB
SRR4785527_GSM2370673 RNA-Seq 666.0 MB
SRR4785528_GSM2370674 RNA-Seq 1.2 GB
SRR4785529_GSM2370675 RNA-Seq 1.7 GB
SRR4785530_GSM2370676 RNA-Seq 1.0 GB
SRR4785531_GSM2370677 RNA-Seq 1.9 GB
SRR4785532_GSM2370678 RNA-Seq 1.1 GB
SRR4785533_GSM2370679 RNA-Seq 1.3 GB
SRR4785534_GSM2370680 RNA-Seq 1.2 GB
SRR4785535_GSM2370681 RNA-Seq 2.3 GB
SRR4785536_GSM2370682 RNA-Seq 517.0 MB
SRR4785537_GSM2370683 RNA-Seq 1.6 GB
SRR4785538_GSM2370684 RNA-Seq 1.2 GB
SRR4785539_GSM2370685 RNA-Seq 497.0 MB
SRR4785540_GSM2370686 RNA-Seq 1.8 GB
SRR4785541_GSM2370687 RNA-Seq 1.9 GB
SRR4785542_GSM2370688 RNA-Seq 1.6 GB
SRR4785543_GSM2370689 RNA-Seq 2.1 GB
SRR4785544_GSM2370690 RNA-Seq 2.2 GB
SRR4785545_GSM2370691 RNA-Seq 1.9 GB
SRR4785546_GSM2370692 RNA-Seq 610.0 MB
SRR4785547_GSM2370693 RNA-Seq 2.1 GB
SRR4785548_GSM2370694 RNA-Seq 726.0 MB
SRR4785549_GSM2370695 RNA-Seq 2.0 GB
SRR4785550_GSM2370696 RNA-Seq 862.0 MB
SRR4785551_GSM2370697 RNA-Seq 923.0 MB
SRR4785552_GSM2370698 RNA-Seq 581.0 MB
SRR4785553_GSM2370699 RNA-Seq 776.0 MB
SRR4785554_GSM2370700 RNA-Seq 1.3 GB
SRR4785555_GSM2370701 RNA-Seq 1.6 GB
SRR4785556_GSM2370702 RNA-Seq 1.3 GB
SRR4785557_GSM2370703 RNA-Seq 1.7 GB
SRR4785558_GSM2370704 RNA-Seq 2.9 GB
SRR4785559_GSM2370705 RNA-Seq 1.8 GB
SRR4785560_GSM2370706 RNA-Seq 1.1 GB
SRR4785561_GSM2370707 RNA-Seq 2.1 GB
SRR4785562_GSM2370708 RNA-Seq 1.5 GB
SRR4785563_GSM2370709 RNA-Seq 1.7 GB
SRR4785564_GSM2370710 RNA-Seq 1.6 GB
SRR4785565_GSM2370711 RNA-Seq 1.7 GB
SRR4785566_GSM2370712 RNA-Seq 1.8 GB
SRR4785567_GSM2370713 RNA-Seq 1.6 GB
SRR4785568_GSM2370714 RNA-Seq 502.0 MB
SRR4785569_GSM2370715 RNA-Seq 1.6 GB
SRR4785570_GSM2370716 RNA-Seq 1.4 GB
SRR4785571_GSM2370717 RNA-Seq 1.0 GB
SRR4785572_GSM2370718 RNA-Seq 1023.0 MB
SRR4785573_GSM2370719 RNA-Seq 2.9 GB
SRR4785574_GSM2370720 RNA-Seq 1.9 GB
SRR4785575_GSM2370721 RNA-Seq 1.2 GB
SRR4785576_GSM2370722 RNA-Seq 661.0 MB
SRR4785577_GSM2370723 RNA-Seq 1.9 GB
SRR4785578_GSM2370724 RNA-Seq 1.8 GB
SRR4785579_GSM2370725 RNA-Seq 1.3 GB
SRR4785580_GSM2370726 RNA-Seq 2.4 GB
SRR4785581_GSM2370727 RNA-Seq 2.0 GB
SRR4785582_GSM2370728 RNA-Seq 462.0 MB
SRR4785583_GSM2370729 RNA-Seq 1.6 GB
SRR4785584_GSM2370730 RNA-Seq 1.7 GB
SRR4785585_GSM2370731 RNA-Seq 2.2 GB
SRR4785586_GSM2370732 RNA-Seq 653.0 MB
SRR4785587_GSM2370733 RNA-Seq 1.1 GB
SRR4785588_GSM2370734 RNA-Seq 383.0 MB
SRR4785589_GSM2370735 RNA-Seq 2.6 GB
SRR4785590_GSM2370736 RNA-Seq 814.0 MB
SRR4785591_GSM2370737 RNA-Seq 1.8 GB
SRR4785592_GSM2370738 RNA-Seq 1.8 GB
SRR4785593_GSM2370739 RNA-Seq 1.9 GB
SRR4785594_GSM2370740 RNA-Seq 711.0 MB
SRR4785595_GSM2370741 RNA-Seq 1.8 GB
SRR4785596_GSM2370742 RNA-Seq 757.0 MB
SRR4785597_GSM2370743 RNA-Seq 1.9 GB
SRR4785598_GSM2370744 RNA-Seq 610.0 MB
SRR4785599_GSM2370745 RNA-Seq 1.5 GB
SRR4785600_GSM2370746 RNA-Seq 857.0 MB
SRR4785601_GSM2370747 RNA-Seq 2.0 GB
SRR4785602_GSM2370748 RNA-Seq 1.7 GB
SRR4785603_GSM2370749 RNA-Seq 1.7 GB
SRR4785604_GSM2370750 RNA-Seq 1.3 GB
SRR4785605_GSM2370751 RNA-Seq 2.6 GB
SRR4785606_GSM2370752 RNA-Seq 616.0 MB
SRR4785607_GSM2370753 RNA-Seq 2.6 GB
SRR4785608_GSM2370754 RNA-Seq 925.0 MB
SRR4785609_GSM2370755 RNA-Seq 1.3 GB
SRR4785610_GSM2370756 RNA-Seq 1.1 GB
SRR4785611_GSM2370757 RNA-Seq 1.4 GB
SRR4785612_GSM2370758 RNA-Seq 435.0 MB
SRR4785613_GSM2370759 RNA-Seq 158.0 MB
SRR4785614_GSM2370760 RNA-Seq 733.0 MB
SRR4785615_GSM2370761 RNA-Seq 1.5 GB
SRR4785616_GSM2370762 RNA-Seq 524.0 MB
SRR4785617_GSM2370763 RNA-Seq 1.2 GB
SRR4785618_GSM2370764 RNA-Seq 1.3 GB
SRR4785619_GSM2370765 RNA-Seq 1.6 GB
SRR4785620_GSM2370766 RNA-Seq 887.0 MB
SRR4785621_GSM2370767 RNA-Seq 949.0 MB
SRR4785622_GSM2370768 RNA-Seq 957.0 MB
SRR4785623_GSM2370769 RNA-Seq 948.0 MB
SRR4785624_GSM2370770 RNA-Seq 700.0 MB
SRR4785625_GSM2370771 RNA-Seq 2.0 GB
SRR4785626_GSM2370772 RNA-Seq 753.0 MB
SRR4785627_GSM2370773 RNA-Seq 1.4 GB
SRR4785628_GSM2370774 RNA-Seq 940.0 MB
SRR4785629_GSM2370775 RNA-Seq 1.0 GB
SRR4785630_GSM2370776 RNA-Seq 1.5 GB
SRR4785631_GSM2370777 RNA-Seq 1.0 GB
SRR4785632_GSM2370778 RNA-Seq 877.0 MB
SRR4785633_GSM2370779 RNA-Seq 764.0 MB
SRR4785634_GSM2370780 RNA-Seq 1.3 GB
SRR4785635_GSM2370781 RNA-Seq 1.3 GB
SRR4785636_GSM2370782 RNA-Seq 310.0 MB
SRR4785637_GSM2370783 RNA-Seq 1.4 GB
SRR4785638_GSM2370784 RNA-Seq 1.4 GB
SRR4785639_GSM2370785 RNA-Seq 2.2 GB
SRR4785640_GSM2370786 RNA-Seq 759.0 MB
SRR4785641_GSM2370787 RNA-Seq 1020.0 MB
SRR4785642_GSM2370788 RNA-Seq 717.0 MB
SRR4785643_GSM2370789 RNA-Seq 1.5 GB
SRR4785644_GSM2370790 RNA-Seq 1.2 GB
SRR4785645_GSM2370791 RNA-Seq 848.0 MB
SRR4785646_GSM2370792 RNA-Seq 1.3 GB
SRR4785647_GSM2370793 RNA-Seq 776.0 MB
SRR4785648_GSM2370794 RNA-Seq 488.0 MB
SRR4785649_GSM2370795 RNA-Seq 1.9 GB
SRR4785650_GSM2370796 RNA-Seq 655.0 MB
SRR4785651_GSM2370797 RNA-Seq 1.5 GB
SRR4785652_GSM2370798 RNA-Seq 1.7 GB
SRR4785653_GSM2370799 RNA-Seq 1.0 GB
SRR4785654_GSM2370800 RNA-Seq 1.3 GB
SRR4785655_GSM2370801 RNA-Seq 1.1 GB
SRR4785656_GSM2370802 RNA-Seq 752.0 MB
SRR4785657_GSM2370803 RNA-Seq 674.0 MB
SRR4785658_GSM2370804 RNA-Seq 1.3 GB
SRR4785659_GSM2370805 RNA-Seq 622.0 MB
SRR4785660_GSM2370806 RNA-Seq 634.0 MB
SRR4785661_GSM2370807 RNA-Seq 1.2 GB
SRR4785662_GSM2370808 RNA-Seq 1.2 GB
SRR4785663_GSM2370809 RNA-Seq 365.0 MB
SRR4785664_GSM2370810 RNA-Seq 1.1 GB
SRR4785665_GSM2370811 RNA-Seq 867.0 MB
SRR4785666_GSM2370812 RNA-Seq 1007.0 MB
SRR4785667_GSM2370813 RNA-Seq 642.0 MB
SRR4785668_GSM2370814 RNA-Seq 932.0 MB
SRR4785669_GSM2370815 RNA-Seq 757.0 MB
SRR4785670_GSM2370816 RNA-Seq 972.0 MB
SRR4785671_GSM2370817 RNA-Seq 468.0 MB
SRR4785672_GSM2370818 RNA-Seq 819.0 MB
SRR4785673_GSM2370819 RNA-Seq 1.7 GB
SRR4785674_GSM2370820 RNA-Seq 940.0 MB
SRR4785675_GSM2370821 RNA-Seq 2.0 GB
SRR4785676_GSM2370822 RNA-Seq 1.2 GB
SRR4785677_GSM2370823 RNA-Seq 1.1 GB
SRR4785678_GSM2370824 RNA-Seq 1.1 GB
SRR4785679_GSM2370825 RNA-Seq 1.5 GB
SRR4785680_GSM2370826 RNA-Seq 605.0 MB
SRR4785681_GSM2370827 RNA-Seq 1.3 GB
SRR4785682_GSM2370828 RNA-Seq 1.2 GB
SRR4785683_GSM2370829 RNA-Seq 1.2 GB
SRR4785684_GSM2370830 RNA-Seq 1.0 GB
SRR4785685_GSM2370831 RNA-Seq 1.0 GB
SRR4785686_GSM2370832 RNA-Seq 1.5 GB
SRR4785687_GSM2370833 RNA-Seq 329.0 MB
SRR4785688_GSM2370834 RNA-Seq 1.2 GB
SRR4785689_GSM2370835 RNA-Seq 1.2 GB
SRR4785690_GSM2370836 RNA-Seq 1.2 GB
SRR4785691_GSM2370837 RNA-Seq 1.3 GB
SRR4785692_GSM2370838 RNA-Seq 1.5 GB
SRR4785693_GSM2370839 RNA-Seq 736.0 MB
SRR4785694_GSM2370840 RNA-Seq 1.7 GB
SRR4785695_GSM2370841 RNA-Seq 571.0 MB
SRR4785696_GSM2370842 RNA-Seq 392.0 MB
SRR4785697_GSM2370843 RNA-Seq 1.6 GB
SRR4785698_GSM2370844 RNA-Seq 630.0 MB
SRR4785699_GSM2370845 RNA-Seq 1.2 GB
SRR4785700_GSM2370846 RNA-Seq 1.6 GB
SRR4785701_GSM2370847 RNA-Seq 1.3 GB
SRR4785702_GSM2370848 RNA-Seq 1.2 GB
SRR4785703_GSM2370849 RNA-Seq 1.3 GB
SRR4785704_GSM2370850 RNA-Seq 746.0 MB
SRR4785705_GSM2370851 RNA-Seq 916.0 MB
SRR4785706_GSM2370852 RNA-Seq 916.0 MB
SRR4785707_GSM2370853 RNA-Seq 977.0 MB
SRR4785708_GSM2370854 RNA-Seq 417.0 MB
SRR4785709_GSM2370855 RNA-Seq 1.3 GB
SRR4785710_GSM2370856 RNA-Seq 1.3 GB
SRR4785711_GSM2370857 RNA-Seq 1.6 GB
SRR4785712_GSM2370858 RNA-Seq 423.0 MB
SRR4785713_GSM2370859 RNA-Seq 782.0 MB
SRR4785714_GSM2370860 RNA-Seq 1.0 GB
SRR4785715_GSM2370861 RNA-Seq 2.3 GB
SRR4785716_GSM2370862 RNA-Seq 575.0 MB
SRR4785717_GSM2370863 RNA-Seq 658.0 MB
SRR4785718_GSM2370864 RNA-Seq 599.0 MB
SRR4785719_GSM2370865 RNA-Seq 502.0 MB
SRR4785720_GSM2370866 RNA-Seq 792.0 MB
SRR4785721_GSM2370867 RNA-Seq 766.0 MB
SRR4785722_GSM2370868 RNA-Seq 205.0 MB
SRR4785723_GSM2370869 RNA-Seq 526.0 MB
SRR4785724_GSM2370870 RNA-Seq 769.0 MB
SRR4785725_GSM2370871 RNA-Seq 663.0 MB
SRR4785726_GSM2370872 RNA-Seq 584.0 MB
SRR4785727_GSM2370873 RNA-Seq 335.0 MB
SRR4785728_GSM2370874 RNA-Seq 729.0 MB
SRR4785729_GSM2370875 RNA-Seq 847.0 MB
SRR4785730_GSM2370876 RNA-Seq 879.0 MB
SRR4785731_GSM2370877 RNA-Seq 793.0 MB
SRR4785732_GSM2370878 RNA-Seq 732.0 MB
SRR4785733_GSM2370879 RNA-Seq 1.3 GB
SRR4785734_GSM2370880 RNA-Seq 1.3 GB
SRR4785735_GSM2370881 RNA-Seq 976.0 MB
SRR4785736_GSM2370882 RNA-Seq 820.0 MB
SRR4785737_GSM2370883 RNA-Seq 920.0 MB
SRR4785738_GSM2370884 RNA-Seq 759.0 MB
SRR4785739_GSM2370885 RNA-Seq 932.0 MB
SRR4785740_GSM2370886 RNA-Seq 621.0 MB
SRR4785741_GSM2370887 RNA-Seq 842.0 MB
SRR4785742_GSM2370888 RNA-Seq 543.0 MB
SRR4785743_GSM2370889 RNA-Seq 557.0 MB
SRR4785744_GSM2370890 RNA-Seq 692.0 MB
SRR4785745_GSM2370891 RNA-Seq 1.0 GB
SRR4785746_GSM2370892 RNA-Seq 650.0 MB
SRR4785747_GSM2370893 RNA-Seq 722.0 MB
SRR4785748_GSM2370894 RNA-Seq 769.0 MB
SRR4785749_GSM2370895 RNA-Seq 914.0 MB
SRR4785750_GSM2370896 RNA-Seq 1.6 GB
SRR4785751_GSM2370897 RNA-Seq 688.0 MB
SRR4785752_GSM2370898 RNA-Seq 1.1 GB
SRR4785753_GSM2370899 RNA-Seq 919.0 MB
SRR4785754_GSM2370900 RNA-Seq 751.0 MB
SRR4785755_GSM2370901 RNA-Seq 1.3 GB
SRR4785756_GSM2370902 RNA-Seq 1.5 GB
SRR4785757_GSM2370903 RNA-Seq 1.3 GB
SRR4785758_GSM2370904 RNA-Seq 1.1 GB
SRR4785759_GSM2370905 RNA-Seq 649.0 MB
SRR4785760_GSM2370906 RNA-Seq 1.5 GB
SRR4785761_GSM2370907 RNA-Seq 798.0 MB
SRR4785762_GSM2370908 RNA-Seq 871.0 MB
SRR4785763_GSM2370909 RNA-Seq 347.0 MB
SRR4785764_GSM2370910 RNA-Seq 692.0 MB
SRR4785765_GSM2370911 RNA-Seq 1.0 GB
SRR4785766_GSM2370912 RNA-Seq 1.0 GB
SRR4785767_GSM2370913 RNA-Seq 941.0 MB
SRR4785768_GSM2370914 RNA-Seq 765.0 MB
SRR4785769_GSM2370915 RNA-Seq 1.2 GB
SRR4785770_GSM2370916 RNA-Seq 815.0 MB
SRR4785771_GSM2370917 RNA-Seq 449.0 MB
SRR4785772_GSM2370918 RNA-Seq 871.0 MB
SRR4785773_GSM2370919 RNA-Seq 689.0 MB
SRR4785774_GSM2370920 RNA-Seq 458.0 MB
SRR4785775_GSM2370921 RNA-Seq 817.0 MB
SRR4785776_GSM2370922 RNA-Seq 1.2 GB
SRR4785777_GSM2370923 RNA-Seq 769.0 MB
SRR4785778_GSM2370924 RNA-Seq 700.0 MB
SRR4785779_GSM2370925 RNA-Seq 788.0 MB
SRR4785780_GSM2370926 RNA-Seq 1.0 GB
SRR4785781_GSM2370927 RNA-Seq 951.0 MB
SRR4785782_GSM2370928 RNA-Seq 779.0 MB
SRR4785783_GSM2370929 RNA-Seq 1.0 GB
SRR4785784_GSM2370930 RNA-Seq 936.0 MB
SRR4785785_GSM2370931 RNA-Seq 1.1 GB
SRR4785786_GSM2370932 RNA-Seq 570.0 MB
SRR4785787_GSM2370933 RNA-Seq 691.0 MB
SRR4785788_GSM2370934 RNA-Seq 969.0 MB
SRR4785789_GSM2370935 RNA-Seq 729.0 MB
SRR4785790_GSM2370936 RNA-Seq 714.0 MB
SRR4785791_GSM2370937 RNA-Seq 935.0 MB
SRR4785792_GSM2370938 RNA-Seq 977.0 MB
SRR4785793_GSM2370939 RNA-Seq 1.4 GB
SRR4785794_GSM2370940 RNA-Seq 394.0 MB
SRR4785795_GSM2370941 RNA-Seq 611.0 MB
SRR4785796_GSM2370942 RNA-Seq 716.0 MB
SRR4785797_GSM2370943 RNA-Seq 554.0 MB
SRR4785798_GSM2370944 RNA-Seq 1.8 GB
SRR4785799_GSM2370945 RNA-Seq 905.0 MB
SRR4785800_GSM2370946 RNA-Seq 565.0 MB
SRR4785801_GSM2370947 RNA-Seq 885.0 MB
SRR4785802_GSM2370948 RNA-Seq 805.0 MB
SRR4785803_GSM2370949 RNA-Seq 680.0 MB
SRR4785804_GSM2370950 RNA-Seq 830.0 MB
SRR4785805_GSM2370951 RNA-Seq 925.0 MB
SRR4785806_GSM2370952 RNA-Seq 934.0 MB
SRR4785807_GSM2370953 RNA-Seq 1005.0 MB
SRR4785808_GSM2370954 RNA-Seq 379.0 MB
SRR4785809_GSM2370955 RNA-Seq 1.0 GB
SRR4785810_GSM2370956 RNA-Seq 2.2 GB
SRR4785811_GSM2370957 RNA-Seq 544.0 MB
GSE95237 GSE · via ncbi_elink
GEO ↗

Genome-wide maps of chromatin state and chromatin accessibility in CD8 T cell subsets

Mus musculus

80 data files
FileTypeSize
SRR5305074 OTHER 882.3 MB
SRR5305074_GSM2357713 OTHER 882.0 MB
SRR5305075 OTHER 678.1 MB
SRR5305075_GSM2357714 OTHER 678.0 MB
SRR5305076 OTHER 733.3 MB
SRR5305076_GSM2357715 OTHER 733.0 MB
SRR5305077 OTHER 649.2 MB
SRR5305077_GSM2357716 OTHER 649.0 MB
SRR5305078 OTHER 684.1 MB
SRR5305078_GSM2357717 OTHER 684.0 MB
SRR5305079_GSM2357718 OTHER 622.0 MB
SRR5305079.sralite OTHER 622.3 MB
SRR5305080 OTHER 381.4 MB
SRR5305080_GSM2357719 OTHER 381.0 MB
SRR5305081 OTHER 1.0 GB
SRR5305081_GSM2357720 OTHER 1.0 GB
SRR5305082 ChIP-Seq 991.9 MB
SRR5305082_GSM2357721 ChIP-Seq 991.0 MB
SRR5305083_GSM2357722 ChIP-Seq 719.0 MB
SRR5305083.sralite ChIP-Seq 719.4 MB
SRR5305084 ChIP-Seq 430.5 MB
SRR5305084_GSM2357723 ChIP-Seq 430.0 MB
SRR5305085 ChIP-Seq 686.9 MB
SRR5305085_GSM2357724 ChIP-Seq 686.0 MB
SRR5305086 ChIP-Seq 615.8 MB
SRR5305086_GSM2357725 ChIP-Seq 615.0 MB
SRR5305087 ChIP-Seq 540.4 MB
SRR5305087_GSM2357726 ChIP-Seq 540.0 MB
SRR5305088 ChIP-Seq 848.8 MB
SRR5305088_GSM2357727 ChIP-Seq 848.0 MB
SRR5305089 ChIP-Seq 266.6 MB
SRR5305089_GSM2357728 ChIP-Seq 266.0 MB
SRR5305090 ChIP-Seq 609.9 MB
SRR5305090_GSM2357729 ChIP-Seq 609.0 MB
SRR5305091 ChIP-Seq 727.1 MB
SRR5305091_GSM2357730 ChIP-Seq 727.0 MB
SRR5305092 ChIP-Seq 921.6 MB
SRR5305092_GSM2357731 ChIP-Seq 921.0 MB
SRR5305093 ChIP-Seq 1.0 GB
SRR5305093_GSM2357732 ChIP-Seq 1.0 GB
SRR5305094 ChIP-Seq 891.6 MB
SRR5305094_GSM2357733 ChIP-Seq 891.0 MB
SRR5305095 ChIP-Seq 861.7 MB
SRR5305095_GSM2357734 ChIP-Seq 861.0 MB
SRR5305096 ChIP-Seq 1.1 GB
SRR5305096_GSM2357735 ChIP-Seq 1.1 GB
SRR5305097 ChIP-Seq 343.6 MB
SRR5305097_GSM2357736 ChIP-Seq 343.0 MB
SRR5305098 ChIP-Seq 730.0 MB
SRR5305098_GSM2357745 ChIP-Seq 730.0 MB
SRR5305099_GSM2357746 ChIP-Seq 432.0 MB
SRR5305099.sralite ChIP-Seq 432.8 MB
SRR5305100_GSM2357747 ChIP-Seq 669.0 MB
SRR5305100.sralite ChIP-Seq 669.8 MB
SRR5305101 ChIP-Seq 323.9 MB
SRR5305101_GSM2357748 ChIP-Seq 323.0 MB
SRR5305102 ChIP-Seq 708.3 MB
SRR5305102_GSM2357749 ChIP-Seq 708.0 MB
SRR5305103 ChIP-Seq 691.2 MB
SRR5305103_GSM2357750 ChIP-Seq 691.0 MB
SRR5305104 ChIP-Seq 969.7 MB
SRR5305104_GSM2357751 ChIP-Seq 969.0 MB
SRR5305105_GSM2357752 ChIP-Seq 326.0 MB
SRR5305105.sralite ChIP-Seq 326.1 MB
SRR5305106 ChIP-Seq 355.2 MB
SRR5305106_GSM2357753 ChIP-Seq 355.0 MB
SRR5305107 ChIP-Seq 319.8 MB
SRR5305107_GSM2357754 ChIP-Seq 319.0 MB
SRR5305108_GSM2357755 ChIP-Seq 1.1 GB
SRR5305108.sralite ChIP-Seq 1.1 GB
SRR5305109 ChIP-Seq 346.4 MB
SRR5305109_GSM2357756 ChIP-Seq 346.0 MB
SRR5305110_GSM2357757 ChIP-Seq 355.0 MB
SRR5305110.sralite ChIP-Seq 355.3 MB
SRR5305111 ChIP-Seq 753.4 MB
SRR5305111_GSM2357758 ChIP-Seq 753.0 MB
SRR5305112_GSM2357759 ChIP-Seq 644.0 MB
SRR5305112.sralite ChIP-Seq 644.1 MB
SRR5305113_GSM2357760 ChIP-Seq 361.0 MB
SRR5305113.sralite ChIP-Seq 361.4 MB
GSE95238 GSE · via ncbi_elink
GEO ↗

Epigenetic landscapes reveal transcription factors that regulate CD8+ T cell differentiation

Potentially related datasets 2

These accessions were text-mined from the PMC full text. They may be referenced for comparison, cited from other studies, or otherwise mentioned without being primary data for this paper.

Accession Source Title
GSE89405 GSE · GEO GEO ↗ Early transcriptional and epigenetic regulation of CD8+ T cell differentiation revealed by single-cell RNA-seq
GSE89036 GSE · GEO GEO ↗ Genome-wide maps of H3K27me3 in CD8 T cell subsets

Analysis pipelines 4

Pipeline Assay Steps Dataset
GSE89036 Data Processing geo_data_processing — 3 GSE89036
GSE89405 RNA-seq Data Processing geo_data_processing RNA-seq 39 GSE89405
GSE95237 Data Processing geo_data_processing — 3 GSE95237
GSE95238 Data Processing geo_data_processing — 3 GSE95238
Funding 12 grants
Grant Funder
R01 HG004659 NHGRI NIH HHS (United States)
R01 AI113923 NIAID NIH HHS (United States)
R01 AI072117 NIAID NIH HHS (United States)
U19 MH107367 NIMH NIH HHS (United States)
Howard Hughes Medical Institute (United States)
T32 DK007202 NIDDK NIH HHS (United States)
R01 NS075449 NINDS NIH HHS (United States)
R01 AI095277 NIAID NIH HHS (United States)
R01 AI096852 NIAID NIH HHS (United States)
R01 DK093507 NIDDK NIH HHS (United States)
R01 AI081923 NIAID NIH HHS (United States)
DP2 OD008469 NIH HHS (United States)