GSE123613
GSE GEOPseudouridine synthases modify human pre-mRNA co-transcriptionally and affect splicingÂ
Organism:
Homo sapiens
Platform:
GPL11154
Samples:
60
Experiment Types:
Expression profiling by high throughput sequencing
Other
Submitted:
Dec 11 2018
Last Updated:
Feb 28 2022
Status:
Public on Feb 15 2022
Contact:
Wendy,,Gilbert (Yale University)
Relations
BioProject: https://www.ncbi.nlm.nih.gov/bioproject/PRJNA509379
SRA: https://www.ncbi.nlm.nih.gov/sra?term=SRP173270
Summary
We performed pseudouridine profiling (Pseudo-seq) on 11 biological replicates of chromatin-associated RNA. We performed mRNA-seq of PUS1 knockout, PUS7 knockdown, RPUSD4 knockdown and wildtype HepG2 cells. We used an in vitro pool based strategy to assign pre-mRNA targets to individual human pseudouridine synthases (PUS) .
Overall Design
Pseudouridylation was measured using Pseudo-seq, a seqeuncing based technique for identifying Ψs (Carlile et al. Nature 2014).
Analysis (9 steps)
View Data Processing
Processing steps for GSE123613
- Library strategy: Pseduo-seq
- Reverse reads were trimmed of 5â² amplicon sequence using cutadapt (-G)
- Trimmed paired end reads collapsed using PEAR (default settings)
- PCR duplicates collapsed for in vitro Pseudo-seq libraries using fastx_collapser
- Reads were mapped to bowtie indices of the pool or GRCh37 for chromatin-associated RNA Pseudo-seq with tophat2.
- Reads from PUS1 knockout and wild type mRNA-seq were mapped to GRCh37 using STAR
- Pseudouridylation was assessed using cutom python scripts (see text)
- Differential mRNA level analysis of PUS1 knockout and wildtype mRNA-seq using DEseq2
Showing first 8 steps.
Supplementary Files (13)
GSE123613_A3SS.MATS.JunctionCountOnly.txt.gz
Download
GSE123613_A5SS.MATS.JunctionCountOnly.txt.gz
Download
GSE123613_DEseq_PUS1KO_results.csv.gz
Download
GSE123613_HepG2_IVT_pseudo-seq_pool.fasta.gz
Download
GSE123613_HepG2_prefs_newpkcall_v2_7reps_p1.0_l7.txt.gz
Download
GSE123613_MXE.MATS.JunctionCountOnly.txt.gz
Download
GSE123613_PUS7.SE.MATS.JunctionCountOnly.txt.gz
Download
GSE123613_PUS_Z-score.txt.gz
Download
GSE123613_RI.MATS.JunctionCountOnly.txt.gz
Download
GSE123613_RPUSD4.SE.MATS.JunctionCountOnly.txt.gz
Download
GSE123613_SE.MATS.JunctionCountOnly.txt.gz
Download
GSE123613_rPUS_peaks_1.txt.gz
Download
GSE123613_rPUS_peaks_2.txt.gz
Download
GEO Samples (60)
GSM3507940
GSM3507941
GSM3507942
GSM3507943
GSM3507944
GSM3507945
GSM3507946
GSM3507947
GSM3507948
GSM3507949
GSM3507950
GSM3507951
GSM3507952
GSM3507953
GSM3507954
GSM3507955
GSM3507956
GSM3507957
GSM3507958
GSM3507959
GSM3507960
GSM3507961
GSM3507962
GSM3507963
GSM3507964
GSM3507965
GSM3507966
GSM3507967
GSM3507968
GSM3507969
GSM3507970
GSM3507971
GSM3507972
GSM3507973
GSM3507974
GSM3507975
GSM3507976
GSM3507977
GSM3507978
GSM3507979
GSM3507980
GSM3507981
GSM3507982
GSM3507983
GSM3507984
GSM3507985
GSM3507986
GSM3507987
GSM3507988
GSM3507989
GSM5693557
GSM5693558
GSM5693559
GSM5693560
GSM5693561
GSM5693562
GSM5693563
GSM5693564
GSM5693565
GSM5693566
Dataset Citations (1)
Pseudouridine synthases modify human pre-mRNA co-transcriptionally and affect pre-mRNA processing.
PMID 35051350
· 2022
· Molecular cell
Nicole M Martinez, Amanda Su, Margaret C Burns, Julia K Nussbacher, Cassandra Schaening, Shashank Sathe, Gene W Yeo, Wendy V Gilbert
SRA Experiments (60) and Runs (60)
Total: 158895 MBGSM5693557: HepG2_Ctrl_PUS7_mRNA_Rep1; Homo sapiens; OTHER
Sample: SRS11089828
BioProject: PRJNA509379
BioSample: SAMN23243253
Platform: ILLUMINA
Instrument: HiSeq X Ten
Organism: Homo sapiens
Sample attributes
source_name: poly(A)+ mRNA HepG2 Ctrl
cell line: HepG2
genotype: control PUS7
bowite fasta: GRCh37
Original files (1)
poly(A)+ mRNA HepG2 Ctrl
Runs (1)
| Run | Spots | Bases | Size (MB) | Files | Link |
|---|---|---|---|---|---|
| SRR16967339 | 79352242 | 23964377084 | 8840.71 | WT1_S1_L001_R1_001.fastq.gz, WT1_S1_L001_R2_001.fastq.gz, SRR16967339… | SRA |
GSM5693558: HepG2_PUS7KD_mRNA_Rep1; Homo sapiens; OTHER
Sample: SRS11089829
BioProject: PRJNA509379
BioSample: SAMN23243254
Platform: ILLUMINA
Instrument: HiSeq X Ten
Organism: Homo sapiens
Sample attributes
source_name: poly(A)+ mRNA HepG2 PUS7 KD
cell line: HepG2
genotype: PUS7 KD
bowite fasta: GRCh37
Original files (1)
poly(A)+ mRNA HepG2 PUS7 KD
Runs (1)
| Run | Spots | Bases | Size (MB) | Files | Link |
|---|---|---|---|---|---|
| SRR16967340 | 69116617 | 20873218334 | 7705.48 | shPUS71_S1_L001_R1_001.fastq.gz, shPUS71_S1_L001_R2_001.fastq.gz, SRR… | SRA |
GSM5693559: HepG2_Ctrl_PUS7_mRNA_Rep2; Homo sapiens; OTHER
Sample: SRS11089831
BioProject: PRJNA509379
BioSample: SAMN23243255
Platform: ILLUMINA
Instrument: HiSeq X Ten
Organism: Homo sapiens
Sample attributes
source_name: poly(A)+ mRNA HepG2 Ctrl
cell line: HepG2
genotype: control PUS7
bowite fasta: GRCh37
Original files (1)
poly(A)+ mRNA HepG2 Ctrl
Runs (1)
| Run | Spots | Bases | Size (MB) | Files | Link |
|---|---|---|---|---|---|
| SRR16967341 | 90498540 | 27330559080 | 9976.35 | WT2_S1_L001_R1_001.fastq.gz, WT2_S1_L001_R2_001.fastq.gz, SRR16967341… | SRA |
GSM5693560: HepG2_PUS7KD_mRNA_Rep2; Homo sapiens; OTHER
Sample: SRS11089830
BioProject: PRJNA509379
BioSample: SAMN23243256
Platform: ILLUMINA
Instrument: HiSeq X Ten
Organism: Homo sapiens
Sample attributes
source_name: poly(A)+ mRNA HepG2 PUS7 KD
cell line: HepG2
genotype: PUS7 KD
bowite fasta: GRCh37
Original files (1)
poly(A)+ mRNA HepG2 PUS7 KD
Runs (1)
| Run | Spots | Bases | Size (MB) | Files | Link |
|---|---|---|---|---|---|
| SRR16967342 | 64788162 | 19566024924 | 7229.8 | shPUS72_S1_L001_R1_001.fastq.gz, shPUS72_S1_L001_R2_001.fastq.gz, SRR… | SRA |
GSM5693561: HepG2_Ctrl_PUS7_mRNA_Rep3; Homo sapiens; OTHER
Sample: SRS11089832
BioProject: PRJNA509379
BioSample: SAMN23243257
Platform: ILLUMINA
Instrument: HiSeq X Ten
Organism: Homo sapiens
Sample attributes
source_name: poly(A)+ mRNA HepG2 Ctrl
cell line: HepG2
genotype: control PUS7
bowite fasta: GRCh37
Original files (1)
poly(A)+ mRNA HepG2 Ctrl
Runs (1)
| Run | Spots | Bases | Size (MB) | Files | Link |
|---|---|---|---|---|---|
| SRR16967343 | 94950237 | 28674971574 | 10536.96 | WT3_S1_L001_R1_001.fastq.gz, WT3_S1_L001_R2_001.fastq.gz, SRR16967343… | SRA |
GSM5693562: HepG2_PUS7KD_mRNA_Rep3; Homo sapiens; OTHER
Sample: SRS11089833
BioProject: PRJNA509379
BioSample: SAMN23243258
Platform: ILLUMINA
Instrument: HiSeq X Ten
Organism: Homo sapiens
Sample attributes
source_name: poly(A)+ mRNA HepG2 PUS7 KD
cell line: HepG2
genotype: PUS7 KD
bowite fasta: GRCh37
Original files (1)
poly(A)+ mRNA HepG2 PUS7 KD
Runs (1)
| Run | Spots | Bases | Size (MB) | Files | Link |
|---|---|---|---|---|---|
| SRR16967344 | 60920610 | 18398024220 | 6830.0 | shPUS73_S1_L001_R1_001.fastq.gz, shPUS73_S1_L001_R2_001.fastq.gz, SRR… | SRA |
GSM5693563: HepG2_Ctrl_RPUSD4_mRNA_Rep1; Homo sapiens; OTHER
Sample: SRS11089834
BioProject: PRJNA509379
BioSample: SAMN23243259
Platform: ILLUMINA
Instrument: HiSeq X Ten
Organism: Homo sapiens
Sample attributes
source_name: poly(A)+ mRNA HepG2 Ctrl
cell line: HepG2
genotype: control PUS7
bowite fasta: GRCh37
Original files (1)
poly(A)+ mRNA HepG2 Ctrl
Runs (1)
| Run | Spots | Bases | Size (MB) | Files | Link |
|---|---|---|---|---|---|
| SRR16967345 | 136033749 | 40810124700 | 15221.94 | Control-1-Resub_R1_001.fastq.gz, Control-1-Resub_R2_001.fastq.gz, SRR… | SRA |
GSM5693564: HepG2_RPUSD4KD_mRNA_Rep1; Homo sapiens; OTHER
Sample: SRS11089835
BioProject: PRJNA509379
BioSample: SAMN23243260
Platform: ILLUMINA
Instrument: HiSeq X Ten
Organism: Homo sapiens
Sample attributes
source_name: poly(A)+ mRNA HepG2 RPUSD4 KD
cell line: HepG2
genotype: PUS7 KD
bowite fasta: GRCh37
Original files (1)
poly(A)+ mRNA HepG2 RPUSD4 KD
Runs (1)
| Run | Spots | Bases | Size (MB) | Files | Link |
|---|---|---|---|---|---|
| SRR16967346 | 100875971 | 30262791300 | 11329.18 | shRPUSD4-1-Resub_R1_001.fastq.gz, shRPUSD4-1-Resub_R2_001.fastq.gz, S… | SRA |
GSM5693565: HepG2_Ctrl_RPUSD4_mRNA_Rep2; Homo sapiens; OTHER
Sample: SRS11089836
BioProject: PRJNA509379
BioSample: SAMN23243261
Platform: ILLUMINA
Instrument: HiSeq X Ten
Organism: Homo sapiens
Sample attributes
source_name: poly(A)+ mRNA HepG2 Ctrl
cell line: HepG2
genotype: control PUS7
bowite fasta: GRCh37
Original files (1)
poly(A)+ mRNA HepG2 Ctrl
Runs (1)
| Run | Spots | Bases | Size (MB) | Files | Link |
|---|---|---|---|---|---|
| SRR16967347 | 84159828 | 25247948400 | 9501.58 | Control-2-Resub_R1_001.fastq.gz, Control-2-Resub_R2_001.fastq.gz, SRR… | SRA |
GSM5693566: HepG2_RPUSD4KD_mRNA_Rep2; Homo sapiens; OTHER
Sample: SRS11089837
BioProject: PRJNA509379
BioSample: SAMN23243262
Platform: ILLUMINA
Instrument: HiSeq X Ten
Organism: Homo sapiens
Sample attributes
source_name: poly(A)+ mRNA HepG2 RPUSD4 KD
cell line: HepG2
genotype: PUS7 KD
bowite fasta: GRCh37
Original files (1)
poly(A)+ mRNA HepG2 RPUSD4 KD
Runs (1)
| Run | Spots | Bases | Size (MB) | Files | Link |
|---|---|---|---|---|---|
| SRR16967348 | 135761364 | 40728409200 | 15357.46 | shRPUSD4-2-Resub_R1_001.fastq.gz, shRPUSD4-2-Resub_R2_001.fastq.gz, S… | SRA |
GSM3507940: IV_noPUS_A_-CMC; Homo sapiens; OTHER
Sample: SRS4137908
BioProject: PRJNA509379
BioSample: SAMN10579354
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: Pool
source: None
cmc use: -
bowite fasta: HepG2_IVT_pseudo-seq_pool.fasta
Original files (1)
Pool
Runs (1)
| Run | Spots | Bases | Size (MB) | Files | Link |
|---|---|---|---|---|---|
| SRR8311135 | 20399684 | 1550375984 | 756.33 | SRR8311135, SRR8311135.sralite | SRA |
GSM3507941: IV_noPUS_A_+CMC; Homo sapiens; OTHER
Sample: SRS4137907
BioProject: PRJNA509379
BioSample: SAMN10579353
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: Pool
source: None
cmc use: 0.4M CMC
bowite fasta: HepG2_IVT_pseudo-seq_pool.fasta
Original files (1)
Pool
Runs (1)
| Run | Spots | Bases | Size (MB) | Files | Link |
|---|---|---|---|---|---|
| SRR8311136 | 25118574 | 1909011624 | 910.39 | SRR8311136, SRR8311136.sralite | SRA |
GSM3507942: IV_TRUB2_-CMC; Homo sapiens; OTHER
Sample: SRS4137909
BioProject: PRJNA509379
BioSample: SAMN10579352
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: Pool
source: Recombinant Full Length hTRUB2
cmc use: -
bowite fasta: HepG2_IVT_pseudo-seq_pool.fasta
Original files (1)
Pool
Runs (1)
| Run | Spots | Bases | Size (MB) | Files | Link |
|---|---|---|---|---|---|
| SRR8311137 | 20864126 | 1585673576 | 766.47 | SRR8311137, SRR8311137.sralite | SRA |
GSM3507943: IV_TRUB2_+CMC; Homo sapiens; OTHER
Sample: SRS4137911
BioProject: PRJNA509379
BioSample: SAMN10579351
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: Pool
source: Recombinant Full Length hTRUB2
cmc use: 0.4M CMC
bowite fasta: HepG2_IVT_pseudo-seq_pool.fasta
Original files (1)
Pool
Runs (1)
| Run | Spots | Bases | Size (MB) | Files | Link |
|---|---|---|---|---|---|
| SRR8311138 | 24006320 | 1824480320 | 885.41 | SRR8311138, SRR8311138.sralite | SRA |
GSM3507944: IV_noPUS_B_-CMC; Homo sapiens; OTHER
Sample: SRS4137910
BioProject: PRJNA509379
BioSample: SAMN10579350
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: Pool
source: None
cmc use: -
bowite fasta: HepG2_IVT_pseudo-seq_pool.fasta
Original files (1)
Pool
Runs (1)
| Run | Spots | Bases | Size (MB) | Files | Link |
|---|---|---|---|---|---|
| SRR8311139 | 13836193 | 1051550668 | 506.46 | SRR8311139, SRR8311139.sralite | SRA |
GSM3507945: IV_noPUS_B_+CMC; Homo sapiens; OTHER
Sample: SRS4137912
BioProject: PRJNA509379
BioSample: SAMN10579336
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: Pool
source: None
cmc use: 0.4M CMC
bowite fasta: HepG2_IVT_pseudo-seq_pool.fasta
Original files (1)
Pool
Runs (1)
| Run | Spots | Bases | Size (MB) | Files | Link |
|---|---|---|---|---|---|
| SRR8311140 | 20988381 | 1595116956 | 771.88 | SRR8311140, SRR8311140.sralite | SRA |
GSM3507946: IV_RPUSD2_-CMC; Homo sapiens; OTHER
Sample: SRS4137913
BioProject: PRJNA509379
BioSample: SAMN10579375
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: Pool
source: Recombinant Full Length hRPUSD2
cmc use: -
bowite fasta: HepG2_IVT_pseudo-seq_pool.fasta
Original files (1)
Pool
Runs (1)
| Run | Spots | Bases | Size (MB) | Files | Link |
|---|---|---|---|---|---|
| SRR8311141 | 21732738 | 1651688088 | 798.19 | SRR8311141, SRR8311141.sralite | SRA |
GSM3507947: IV_RPUSD2_+CMC; Homo sapiens; OTHER
Sample: SRS4137914
BioProject: PRJNA509379
BioSample: SAMN10579374
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: Pool
source: Recombinant Full Length hRPUSD2
cmc use: 0.4M CMC
bowite fasta: HepG2_IVT_pseudo-seq_pool.fasta
Original files (1)
Pool
Runs (1)
| Run | Spots | Bases | Size (MB) | Files | Link |
|---|---|---|---|---|---|
| SRR8311142 | 22952640 | 1744400640 | 837.77 | SRR8311142, SRR8311142.sralite | SRA |
GSM3507948: IV_noPUS_C_-CMC; Homo sapiens; OTHER
Sample: SRS4137915
BioProject: PRJNA509379
BioSample: SAMN10579373
Platform: ILLUMINA
Instrument: Illumina HiSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: Pool
source: None
cmc use: -
bowite fasta: HepG2_IVT_pseudo-seq_pool.fasta
Original files (1)
Pool
Runs (1)
| Run | Spots | Bases | Size (MB) | Files | Link |
|---|---|---|---|---|---|
| SRR8311143 | 21637387 | 1081869350 | 642.92 | SRR8311143, SRR8311143.sralite | SRA |
GSM3507949: IV_noPUS_C_+CMC; Homo sapiens; OTHER
Sample: SRS4137916
BioProject: PRJNA509379
BioSample: SAMN10579372
Platform: ILLUMINA
Instrument: Illumina HiSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: Pool
source: None
cmc use: 0.4M CMC
bowite fasta: HepG2_IVT_pseudo-seq_pool.fasta
Original files (1)
Pool
Runs (1)
| Run | Spots | Bases | Size (MB) | Files | Link |
|---|---|---|---|---|---|
| SRR8311144 | 13859430 | 692971500 | 412.02 | SRR8311144, SRR8311144.sralite | SRA |
GSM3507950: IV_TRUB1_-CMC; Homo sapiens; OTHER
Sample: SRS4137917
BioProject: PRJNA509379
BioSample: SAMN10579371
Platform: ILLUMINA
Instrument: Illumina HiSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: Pool
source: Recombinant Full Length hTRUB1
cmc use: -
bowite fasta: HepG2_IVT_pseudo-seq_pool.fasta
Original files (1)
Pool
Runs (1)
| Run | Spots | Bases | Size (MB) | Files | Link |
|---|---|---|---|---|---|
| SRR8311145 | 27818762 | 1390938100 | 814.31 | SRR8311145, SRR8311145.sralite | SRA |
GSM3507951: IV_TRUB1_+CMC; Homo sapiens; OTHER
Sample: SRS4137918
BioProject: PRJNA509379
BioSample: SAMN10579370
Platform: ILLUMINA
Instrument: Illumina HiSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: Pool
source: Recombinant Full Length hTRUB1
cmc use: 0.4M CMC
bowite fasta: HepG2_IVT_pseudo-seq_pool.fasta
Original files (1)
Pool
Runs (1)
| Run | Spots | Bases | Size (MB) | Files | Link |
|---|---|---|---|---|---|
| SRR8311146 | 18143671 | 907183550 | 538.51 | SRR8311146, SRR8311146.sralite | SRA |
GSM3507952: IV_PUS1_-CMC; Homo sapiens; OTHER
Sample: SRS4137919
BioProject: PRJNA509379
BioSample: SAMN10579369
Platform: ILLUMINA
Instrument: Illumina HiSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: Pool
source: Recombinant Full Length hTRUB1
cmc use: -
bowite fasta: HepG2_IVT_pseudo-seq_pool.fasta
Original files (1)
Pool
Runs (1)
| Run | Spots | Bases | Size (MB) | Files | Link |
|---|---|---|---|---|---|
| SRR8311147 | 21789893 | 1089494650 | 646.52 | SRR8311147, SRR8311147.sralite | SRA |
GSM3507953: IV_PUS1_+CMC; Homo sapiens; OTHER
Sample: SRS4137920
BioProject: PRJNA509379
BioSample: SAMN10579368
Platform: ILLUMINA
Instrument: Illumina HiSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: Pool
source: Recombinant Full Length hTRUB1
cmc use: 0.4M CMC
bowite fasta: HepG2_IVT_pseudo-seq_pool.fasta
Original files (1)
Pool
Runs (1)
| Run | Spots | Bases | Size (MB) | Files | Link |
|---|---|---|---|---|---|
| SRR8311148 | 17261644 | 863082200 | 513.98 | SRR8311148, SRR8311148.sralite | SRA |
GSM3507954: IV_PUS7_-CMC; Homo sapiens; OTHER
Sample: SRS4137922
BioProject: PRJNA509379
BioSample: SAMN10579367
Platform: ILLUMINA
Instrument: Illumina HiSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: Pool
source: Recombinant Full Length hPUS7
cmc use: -
bowite fasta: HepG2_IVT_pseudo-seq_pool.fasta
Original files (1)
Pool
Runs (1)
| Run | Spots | Bases | Size (MB) | Files | Link |
|---|---|---|---|---|---|
| SRR8311149 | 16205751 | 810287550 | 477.43 | SRR8311149, SRR8311149.sralite | SRA |
GSM3507955: IV_PUS7_+CMC; Homo sapiens; OTHER
Sample: SRS4137921
BioProject: PRJNA509379
BioSample: SAMN10579366
Platform: ILLUMINA
Instrument: Illumina HiSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: Pool
source: Recombinant Full Length hPUS7
cmc use: 0.4M CMC
bowite fasta: HepG2_IVT_pseudo-seq_pool.fasta
Original files (1)
Pool
Runs (1)
| Run | Spots | Bases | Size (MB) | Files | Link |
|---|---|---|---|---|---|
| SRR8311150 | 17114090 | 855704500 | 510.45 | SRR8311150, SRR8311150.sralite | SRA |
GSM3507956: IV_PUS7L_-CMC; Homo sapiens; OTHER
Sample: SRS4137923
BioProject: PRJNA509379
BioSample: SAMN10579365
Platform: ILLUMINA
Instrument: Illumina HiSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: Pool
source: Recombinant Full Length hPUS7L
cmc use: -
bowite fasta: HepG2_IVT_pseudo-seq_pool.fasta
Original files (1)
Pool
Runs (1)
| Run | Spots | Bases | Size (MB) | Files | Link |
|---|---|---|---|---|---|
| SRR8311151 | 22454375 | 1122718750 | 661.46 | SRR8311151, SRR8311151.sralite | SRA |
GSM3507957: IV_PUS7L_+CMC; Homo sapiens; OTHER
Sample: SRS4137924
BioProject: PRJNA509379
BioSample: SAMN10579364
Platform: ILLUMINA
Instrument: Illumina HiSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: Pool
source: Recombinant Full Length hPUS7L
cmc use: 0.4M CMC
bowite fasta: HepG2_IVT_pseudo-seq_pool.fasta
Original files (1)
Pool
Runs (1)
| Run | Spots | Bases | Size (MB) | Files | Link |
|---|---|---|---|---|---|
| SRR8311152 | 19742371 | 987118550 | 586.33 | SRR8311152, SRR8311152.sralite | SRA |
GSM3507958: IV_PUS10_-CMC; Homo sapiens; OTHER
Sample: SRS4137925
BioProject: PRJNA509379
BioSample: SAMN10579363
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: Pool
source: Recombinant Full Length hPUS10
cmc use: -
bowite fasta: HepG2_IVT_pseudo-seq_pool.fasta
Original files (1)
Pool
Runs (1)
| Run | Spots | Bases | Size (MB) | Files | Link |
|---|---|---|---|---|---|
| SRR8311153 | 20067482 | 1525128632 | 738.04 | SRR8311153, SRR8311153.sralite | SRA |
GSM3507959: IV_PUS10_+CMC; Homo sapiens; OTHER
Sample: SRS4137926
BioProject: PRJNA509379
BioSample: SAMN10579362
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: Pool
source: Recombinant Full Length hPUS10
cmc use: 0.4M CMC
bowite fasta: HepG2_IVT_pseudo-seq_pool.fasta
Original files (1)
Pool
Runs (1)
| Run | Spots | Bases | Size (MB) | Files | Link |
|---|---|---|---|---|---|
| SRR8311154 | 18729578 | 1423447928 | 686.82 | SRR8311154, SRR8311154.sralite | SRA |
GSM3507960: IV_RPUSD4_-CMC; Homo sapiens; OTHER
Sample: SRS4137927
BioProject: PRJNA509379
BioSample: SAMN10579361
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: Pool
source: Recombinant Full Length hRPUSD4
cmc use: -
bowite fasta: HepG2_IVT_pseudo-seq_pool.fasta
Original files (1)
Pool
Runs (1)
| Run | Spots | Bases | Size (MB) | Files | Link |
|---|---|---|---|---|---|
| SRR8311155 | 22812600 | 1733757600 | 831.41 | SRR8311155, SRR8311155.sralite | SRA |
GSM3507961: IV_RPUSD4_+CMC; Homo sapiens; OTHER
Sample: SRS4137928
BioProject: PRJNA509379
BioSample: SAMN10579360
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: Pool
source: Recombinant Full Length hRPUSD4
cmc use: 0.4M CMC
bowite fasta: HepG2_IVT_pseudo-seq_pool.fasta
Original files (1)
Pool
Runs (1)
| Run | Spots | Bases | Size (MB) | Files | Link |
|---|---|---|---|---|---|
| SRR8311156 | 22290712 | 1694094112 | 815.56 | SRR8311156, SRR8311156.sralite | SRA |
GSM3507962: IV_HepG2_NE_-CMC; Homo sapiens; OTHER
Sample: SRS4137929
BioProject: PRJNA509379
BioSample: SAMN10579359
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: Pool
source: Nuclear extract (NE) from HepG2 cells
cmc use: -
bowite fasta: HepG2_IVT_pseudo-seq_pool.fasta
Original files (1)
Pool
Runs (1)
| Run | Spots | Bases | Size (MB) | Files | Link |
|---|---|---|---|---|---|
| SRR8311157 | 18674897 | 1419292172 | 681.4 | SRR8311157, SRR8311157.sralite | SRA |
GSM3507963: IV_HepG2_NE_+CMC; Homo sapiens; OTHER
Sample: SRS4137931
BioProject: PRJNA509379
BioSample: SAMN10579358
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Homo sapiens
Sample attributes
source_name: Pool
source: Nuclear extract (NE) from HepG2 cells
cmc use: 0.4M CMC
bowite fasta: HepG2_IVT_pseudo-seq_pool.fasta
Original files (1)
Pool
Runs (1)
| Run | Spots | Bases | Size (MB) | Files | Link |
|---|---|---|---|---|---|
| SRR8311158 | 17861880 | 1357502880 | 654.26 | SRR8311158, SRR8311158.sralite | SRA |
GSM3507964: chr_HepG2_-CMC_1; Homo sapiens; OTHER
Sample: SRS4137930
BioProject: PRJNA509379
BioSample: SAMN10579357
Platform: ILLUMINA
Instrument: Illumina HiSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: HepG2
source: chromatin-associated RNA HepG2 cells
cmc use: -
bowite fasta: GRCh37
Original files (1)
HepG2
Runs (1)
| Run | Spots | Bases | Size (MB) | Files | Link |
|---|---|---|---|---|---|
| SRR8311159 | 20225670 | 809026800 | 511.03 | SRR8311159, SRR8311159.sralite | SRA |
GSM3507965: chr_HepG2_+CMC_1; Homo sapiens; OTHER
Sample: SRS4137932
BioProject: PRJNA509379
BioSample: SAMN10579356
Platform: ILLUMINA
Instrument: Illumina HiSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: HepG2
source: chromatin-associated RNA HepG2 cells
cmc use: 0.4M CMC
bowite fasta: GRCh37
Original files (1)
HepG2
Runs (1)
| Run | Spots | Bases | Size (MB) | Files | Link |
|---|---|---|---|---|---|
| SRR8311160 | 20896243 | 835849720 | 528.59 | SRR8311160, SRR8311160.sralite | SRA |
GSM3507966: chr_HepG2_-CMC_2; Homo sapiens; OTHER
Sample: SRS4137933
BioProject: PRJNA509379
BioSample: SAMN10579355
Platform: ILLUMINA
Instrument: Illumina HiSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: HepG2
source: chromatin-associated RNA HepG2 cells
cmc use: -
bowite fasta: GRCh37
Original files (1)
HepG2
Runs (1)
| Run | Spots | Bases | Size (MB) | Files | Link |
|---|---|---|---|---|---|
| SRR8311161 | 28062741 | 1122509640 | 704.87 | SRR8311161, SRR8311161.sralite | SRA |
GSM3507967: chr_HepG2_+CMC_2; Homo sapiens; OTHER
Sample: SRS4137934
BioProject: PRJNA509379
BioSample: SAMN10579348
Platform: ILLUMINA
Instrument: Illumina HiSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: HepG2
source: chromatin-associated RNA HepG2 cells
cmc use: 0.4M CMC
bowite fasta: GRCh37
Original files (1)
HepG2
Runs (1)
| Run | Spots | Bases | Size (MB) | Files | Link |
|---|---|---|---|---|---|
| SRR8311162 | 17878645 | 715145800 | 449.81 | SRR8311162, SRR8311162.sralite | SRA |
GSM3507968: chr_HepG2_-CMC_3; Homo sapiens; OTHER
Sample: SRS4137935
BioProject: PRJNA509379
BioSample: SAMN10579347
Platform: ILLUMINA
Instrument: Illumina HiSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: HepG2
source: chromatin-associated RNA HepG2 cells
cmc use: -
bowite fasta: GRCh37
Original files (1)
HepG2
Runs (1)
| Run | Spots | Bases | Size (MB) | Files | Link |
|---|---|---|---|---|---|
| SRR8311163 | 28352118 | 1417605900 | 880.61 | SRR8311163, SRR8311163.sralite | SRA |
GSM3507969: chr_HepG2_+CMC_3; Homo sapiens; OTHER
Sample: SRS4137936
BioProject: PRJNA509379
BioSample: SAMN10579346
Platform: ILLUMINA
Instrument: Illumina HiSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: HepG2
source: chromatin-associated RNA HepG2 cells
cmc use: 0.4M CMC
bowite fasta: GRCh37
Original files (1)
HepG2
Runs (1)
| Run | Spots | Bases | Size (MB) | Files | Link |
|---|---|---|---|---|---|
| SRR8311164 | 20631153 | 1031557650 | 643.59 | SRR8311164, SRR8311164.sralite | SRA |
GSM3507970: chr_HepG2_-CMC_4; Homo sapiens; OTHER
Sample: SRS4137937
BioProject: PRJNA509379
BioSample: SAMN10579345
Platform: ILLUMINA
Instrument: Illumina HiSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: HepG2
source: chromatin-associated RNA HepG2 cells
cmc use: -
bowite fasta: GRCh37
Original files (1)
HepG2
Runs (1)
| Run | Spots | Bases | Size (MB) | Files | Link |
|---|---|---|---|---|---|
| SRR8311165 | 29976602 | 1498830100 | 929.87 | SRR8311165, SRR8311165.sralite | SRA |
GSM3507971: chr_HepG2_+CMC_4; Homo sapiens; OTHER
Sample: SRS4137938
BioProject: PRJNA509379
BioSample: SAMN10579344
Platform: ILLUMINA
Instrument: Illumina HiSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: HepG2
source: chromatin-associated RNA HepG2 cells
cmc use: 0.4M CMC
bowite fasta: GRCh37
Original files (1)
HepG2
Runs (1)
| Run | Spots | Bases | Size (MB) | Files | Link |
|---|---|---|---|---|---|
| SRR8311166 | 23219503 | 1160975150 | 725.92 | SRR8311166, SRR8311166.sralite | SRA |
GSM3507972: chr_HepG2_-CMC_5; Homo sapiens; OTHER
Sample: SRS4137939
BioProject: PRJNA509379
BioSample: SAMN10579343
Platform: ILLUMINA
Instrument: Illumina HiSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: HepG2
source: chromatin-associated RNA HepG2 cells
cmc use: -
bowite fasta: GRCh37
Original files (1)
HepG2
Runs (1)
| Run | Spots | Bases | Size (MB) | Files | Link |
|---|---|---|---|---|---|
| SRR8311167 | 23832194 | 1191609700 | 742.67 | SRR8311167, SRR8311167.sralite | SRA |
GSM3507973: chr_HepG2_+CMC_5; Homo sapiens; OTHER
Sample: SRS4137940
BioProject: PRJNA509379
BioSample: SAMN10579342
Platform: ILLUMINA
Instrument: Illumina HiSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: HepG2
source: chromatin-associated RNA HepG2 cells
cmc use: 0.4M CMC
bowite fasta: GRCh37
Original files (1)
HepG2
Runs (1)
| Run | Spots | Bases | Size (MB) | Files | Link |
|---|---|---|---|---|---|
| SRR8311168 | 34646695 | 1732334750 | 1107.4 | SRR8311168, SRR8311168.sralite | SRA |
GSM3507974: chr_HepG2_-CMC_6; Homo sapiens; OTHER
Sample: SRS4137943
BioProject: PRJNA509379
BioSample: SAMN10579341
Platform: ILLUMINA
Instrument: Illumina HiSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: HepG2
source: chromatin-associated RNA HepG2 cells
cmc use: -
bowite fasta: GRCh37
Original files (1)
HepG2
Runs (1)
| Run | Spots | Bases | Size (MB) | Files | Link |
|---|---|---|---|---|---|
| SRR8311169 | 36336945 | 1816847250 | 1138.0 | SRR8311169, SRR8311169.sralite | SRA |
GSM3507975: chr_HepG2_+CMC_6; Homo sapiens; OTHER
Sample: SRS4137941
BioProject: PRJNA509379
BioSample: SAMN10579340
Platform: ILLUMINA
Instrument: Illumina HiSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: HepG2
source: chromatin-associated RNA HepG2 cells
cmc use: 0.4M CMC
bowite fasta: GRCh37
Original files (1)
HepG2
Runs (1)
| Run | Spots | Bases | Size (MB) | Files | Link |
|---|---|---|---|---|---|
| SRR8311170 | 16000219 | 800010950 | 514.68 | SRR8311170, SRR8311170.sralite | SRA |
GSM3507976: chr_HepG2_-CMC_7; Homo sapiens; OTHER
Sample: SRS4137942
BioProject: PRJNA509379
BioSample: SAMN10579339
Platform: ILLUMINA
Instrument: Illumina HiSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: HepG2
source: chromatin-associated RNA HepG2 cells
cmc use: -
bowite fasta: GRCh37
Original files (1)
HepG2
Runs (1)
| Run | Spots | Bases | Size (MB) | Files | Link |
|---|---|---|---|---|---|
| SRR8311171 | 17448150 | 872407500 | 559.9 | SRR8311171, SRR8311171.sralite | SRA |
GSM3507977: chr_HepG2_+CMC_7; Homo sapiens; OTHER
Sample: SRS4137944
BioProject: PRJNA509379
BioSample: SAMN10579338
Platform: ILLUMINA
Instrument: Illumina HiSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: HepG2
source: chromatin-associated RNA HepG2 cells
cmc use: 0.4M CMC
bowite fasta: GRCh37
Original files (1)
HepG2
Runs (1)
| Run | Spots | Bases | Size (MB) | Files | Link |
|---|---|---|---|---|---|
| SRR8311172 | 40219991 | 2010999550 | 1233.48 | SRR8311172, SRR8311172.sralite | SRA |
GSM3507978: chr_HepG2_-CMC_8; Homo sapiens; OTHER
Sample: SRS4137947
BioProject: PRJNA509379
BioSample: SAMN10579337
Platform: ILLUMINA
Instrument: Illumina HiSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: HepG2
source: chromatin-associated RNA HepG2 cells
cmc use: -
bowite fasta: GRCh37
Original files (1)
HepG2
Runs (1)
| Run | Spots | Bases | Size (MB) | Files | Link |
|---|---|---|---|---|---|
| SRR8311173 | 36279837 | 1813991850 | 1174.33 | SRR8311173, SRR8311173.sralite | SRA |
GSM3507979: chr_HepG2_+CMC_8; Homo sapiens; OTHER
Sample: SRS4137945
BioProject: PRJNA509379
BioSample: SAMN10579386
Platform: ILLUMINA
Instrument: Illumina HiSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: HepG2
source: chromatin-associated RNA HepG2 cells
cmc use: 0.4M CMC
bowite fasta: GRCh37
Original files (1)
HepG2
Runs (1)
| Run | Spots | Bases | Size (MB) | Files | Link |
|---|---|---|---|---|---|
| SRR8311174 | 34201889 | 1710094450 | 1001.84 | SRR8311174, SRR8311174.sralite | SRA |
GSM3507980: chr_HepG2_-CMC_9; Homo sapiens; OTHER
Sample: SRS4137946
BioProject: PRJNA509379
BioSample: SAMN10579385
Platform: ILLUMINA
Instrument: Illumina HiSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: HepG2
source: chromatin-associated RNA HepG2 cells
cmc use: -
bowite fasta: GRCh37
Original files (1)
HepG2
Runs (1)
| Run | Spots | Bases | Size (MB) | Files | Link |
|---|---|---|---|---|---|
| SRR8311175 | 41700732 | 2085036600 | 1322.07 | SRR8311175, SRR8311175.sralite | SRA |
GSM3507981: chr_HepG2_+CMC_9; Homo sapiens; OTHER
Sample: SRS4137948
BioProject: PRJNA509379
BioSample: SAMN10579384
Platform: ILLUMINA
Instrument: Illumina HiSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: HepG2
source: chromatin-associated RNA HepG2 cells
cmc use: 0.4M CMC
bowite fasta: GRCh37
Original files (1)
HepG2
Runs (1)
| Run | Spots | Bases | Size (MB) | Files | Link |
|---|---|---|---|---|---|
| SRR8311176 | 39068496 | 1953424800 | 1218.78 | SRR8311176, SRR8311176.sralite | SRA |
GSM3507982: chr_HepG2_-CMC_10; Homo sapiens; OTHER
Sample: SRS4137950
BioProject: PRJNA509379
BioSample: SAMN10579383
Platform: ILLUMINA
Instrument: Illumina HiSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: HepG2
source: chromatin-associated RNA HepG2 cells
cmc use: -
bowite fasta: GRCh37
Original files (1)
HepG2
Runs (1)
| Run | Spots | Bases | Size (MB) | Files | Link |
|---|---|---|---|---|---|
| SRR8311177 | 28881375 | 1444068750 | 869.11 | SRR8311177, SRR8311177.sralite | SRA |
GSM3507983: chr_HepG2_+CMC_10; Homo sapiens; OTHER
Sample: SRS4137949
BioProject: PRJNA509379
BioSample: SAMN10579382
Platform: ILLUMINA
Instrument: Illumina HiSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: HepG2
source: chromatin-associated RNA HepG2 cells
cmc use: 0.4M CMC
bowite fasta: GRCh37
Original files (1)
HepG2
Runs (1)
| Run | Spots | Bases | Size (MB) | Files | Link |
|---|---|---|---|---|---|
| SRR8311178 | 28523911 | 1426195550 | 885.81 | SRR8311178, SRR8311178.sralite | SRA |
GSM3507984: chr_HepG2_-CMC_11; Homo sapiens; OTHER
Sample: SRS4137951
BioProject: PRJNA509379
BioSample: SAMN10579381
Platform: ILLUMINA
Instrument: Illumina HiSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: HepG2
source: chromatin-associated RNA HepG2 cells
cmc use: -
bowite fasta: GRCh37
Original files (1)
HepG2
Runs (1)
| Run | Spots | Bases | Size (MB) | Files | Link |
|---|---|---|---|---|---|
| SRR8311179 | 24304791 | 1215239550 | 758.73 | SRR8311179, SRR8311179.sralite | SRA |
GSM3507985: chr_HepG2_+CMC_11; Homo sapiens; OTHER
Sample: SRS4137952
BioProject: PRJNA509379
BioSample: SAMN10579380
Platform: ILLUMINA
Instrument: Illumina HiSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: HepG2
source: chromatin-associated RNA HepG2 cells
cmc use: 0.4M CMC
bowite fasta: GRCh37
Original files (1)
HepG2
Runs (1)
| Run | Spots | Bases | Size (MB) | Files | Link |
|---|---|---|---|---|---|
| SRR8311180 | 33552822 | 1677641100 | 1022.49 | SRR8311180, SRR8311180.sralite | SRA |
GSM3507986: HepG2_WT_mRNA_Rep1; Homo sapiens; RNA-Seq
Sample: SRS4137953
BioProject: PRJNA509379
BioSample: SAMN10579379
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Homo sapiens
Sample attributes
source_name: HepG2
source: poly(A)+ mRNA HepG2
cmc use: -
bowite fasta: GRCh37
Original files (1)
HepG2
Runs (1)
| Run | Spots | Bases | Size (MB) | Files | Link |
|---|---|---|---|---|---|
| SRR8311181 | 136261983 | 10900958640 | 4752.89 | SRR8311181, SRR8311181.sralite | SRA |
GSM3507987: HepG2_KO_mRNA_Rep1; Homo sapiens; RNA-Seq
Sample: SRS4137954
BioProject: PRJNA509379
BioSample: SAMN10579378
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Homo sapiens
Sample attributes
source_name: HepG2
source: poly(A)+ mRNA HepG2 PUS1 KO
cmc use: -
bowite fasta: GRCh37
Original files (1)
HepG2
Runs (1)
| Run | Spots | Bases | Size (MB) | Files | Link |
|---|---|---|---|---|---|
| SRR8311182 | 143218404 | 11457472320 | 4998.35 | SRR8311182, SRR8311182.sralite | SRA |
GSM3507988: HepG2_WT_mRNA_Rep2; Homo sapiens; RNA-Seq
Sample: SRS4137955
BioProject: PRJNA509379
BioSample: SAMN10579377
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Homo sapiens
Sample attributes
source_name: HepG2
source: poly(A)+ mRNA HepG2
cmc use: -
bowite fasta: GRCh37
Original files (1)
HepG2
Runs (1)
| Run | Spots | Bases | Size (MB) | Files | Link |
|---|---|---|---|---|---|
| SRR8311183 | 158209430 | 12656754400 | 5462.15 | SRR8311183, SRR8311183.sralite | SRA |
GSM3507989: HepG2_KO_mRNA_Rep2; Homo sapiens; RNA-Seq
Sample: SRS4137956
BioProject: PRJNA509379
BioSample: SAMN10579376
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Homo sapiens
Sample attributes
source_name: HepG2
source: poly(A)+ mRNA HepG2 PUS1 KO
cmc use: -
bowite fasta: GRCh37
Original files (1)
HepG2
Runs (1)
| Run | Spots | Bases | Size (MB) | Files | Link |
|---|---|---|---|---|---|
| SRR8311184 | 167097443 | 13367795440 | 5783.87 | SRR8311184, SRR8311184.sralite | SRA |
Linked Publications (1)
Data Files (60)
| Accession | File Name | Stored Type | Output Type | Mapping Assembly | Size | Download | |
|---|---|---|---|---|---|---|---|
| — | Control-1-Resub_R1_001.fastq.gz | OTHER | 14.9 GB | link | |||
| — | Control-2-Resub_R1_001.fastq.gz | OTHER | 9.3 GB | link | |||
| — | shPUS71_S1_L001_R1_001.fastq.gz | OTHER | 7.5 GB | link | |||
| — | shPUS72_S1_L001_R1_001.fastq.gz | OTHER | 7.1 GB | link | |||
| — | shPUS73_S1_L001_R1_001.fastq.gz | OTHER | 6.7 GB | link | |||
| — | shRPUSD4-1-Resub_R1_001.fastq.gz | OTHER | 11.1 GB | link | |||
| — | shRPUSD4-2-Resub_R1_001.fastq.gz | OTHER | 15.0 GB | link | |||
| — | SRR8311135 | OTHER | 756.3 MB | link | |||
| — | SRR8311136 | OTHER | 910.4 MB | link | |||
| — | SRR8311137 | OTHER | 766.5 MB | link | |||
| — | SRR8311138 | OTHER | 885.4 MB | link | |||
| — | SRR8311139 | OTHER | 506.5 MB | link | |||
| — | SRR8311140 | OTHER | 771.9 MB | link | |||
| — | SRR8311141 | OTHER | 798.2 MB | link | |||
| — | SRR8311142 | OTHER | 837.8 MB | link | |||
| — | SRR8311143 | OTHER | 642.9 MB | link | |||
| — | SRR8311144 | OTHER | 412.0 MB | link | |||
| — | SRR8311145 | OTHER | 814.3 MB | link | |||
| — | SRR8311146 | OTHER | 538.5 MB | link | |||
| — | SRR8311147 | OTHER | 646.5 MB | link | |||
| — | SRR8311148 | OTHER | 514.0 MB | link | |||
| — | SRR8311149 | OTHER | 477.4 MB | link | |||
| — | SRR8311150 | OTHER | 510.4 MB | link | |||
| — | SRR8311151 | OTHER | 661.5 MB | link | |||
| — | SRR8311152 | OTHER | 586.3 MB | link | |||
| — | SRR8311153 | OTHER | 738.0 MB | link | |||
| — | SRR8311154 | OTHER | 686.8 MB | link | |||
| — | SRR8311155 | OTHER | 831.4 MB | link | |||
| — | SRR8311156 | OTHER | 815.6 MB | link | |||
| — | SRR8311157 | OTHER | 681.4 MB | link | |||
| — | SRR8311158 | OTHER | 654.3 MB | link | |||
| — | SRR8311159 | OTHER | 511.0 MB | link | |||
| — | SRR8311160 | OTHER | 528.6 MB | link | |||
| — | SRR8311161 | OTHER | 704.9 MB | link | |||
| — | SRR8311162 | OTHER | 449.8 MB | link | |||
| — | SRR8311163 | OTHER | 880.6 MB | link | |||
| — | SRR8311164 | OTHER | 643.6 MB | link | |||
| — | SRR8311165 | OTHER | 929.9 MB | link | |||
| — | SRR8311166 | OTHER | 725.9 MB | link | |||
| — | SRR8311167 | OTHER | 742.7 MB | link | |||
| — | SRR8311168 | OTHER | 1.1 GB | link | |||
| — | SRR8311169 | OTHER | 1.1 GB | link | |||
| — | SRR8311170 | OTHER | 514.7 MB | link | |||
| — | SRR8311171 | OTHER | 559.9 MB | link | |||
| — | SRR8311172 | OTHER | 1.2 GB | link | |||
| — | SRR8311173 | OTHER | 1.1 GB | link | |||
| — | SRR8311174 | OTHER | 1001.8 MB | link | |||
| — | SRR8311175 | OTHER | 1.3 GB | link | |||
| — | SRR8311176 | OTHER | 1.2 GB | link | |||
| — | SRR8311177 | OTHER | 869.1 MB | link | |||
| — | SRR8311178 | OTHER | 885.8 MB | link | |||
| — | SRR8311179 | OTHER | 758.7 MB | link | |||
| — | SRR8311180 | OTHER | 1022.5 MB | link | |||
| — | WT1_S1_L001_R1_001.fastq.gz | OTHER | 8.6 GB | link | |||
| — | WT2_S1_L001_R1_001.fastq.gz | OTHER | 9.7 GB | link | |||
| — | WT3_S1_L001_R1_001.fastq.gz | OTHER | 10.3 GB | link | |||
| — | SRR8311181 | RNA-Seq | 4.6 GB | link | |||
| — | SRR8311182 | RNA-Seq | 4.9 GB | link | |||
| — | SRR8311183 | RNA-Seq | 5.3 GB | link | |||
| — | SRR8311184 | RNA-Seq | 5.6 GB | link |