ENCSR081XRA
ENCSR ENCODEshRNA knockdown against SF3B4 in K562 cells followed by RNA-seq. (SF3B4-LV08)
Organism:
Homo sapiens
Experiment Types:
shRNA RNA-seq
Status:
released
Contact:
Brenton Graveley, UConn
Summary
shRNA RNA-seq of SF3B4 in Homo sapiens K562 expressing RNAi targeting H. sapiens SF3B4
Analysis
View Data Processing
Analysis page is available for ENCSR081XRA.
ENCODE Metadata
Total file size: 87.7 GBAssay: shRNA RNA-seq
Target: SF3B4
Biosample: Homo sapiens K562 expressing RNAi targeting H. sapiens SF3B4
Files: 92
Unique ENC file IDs: 92
File Formats
bigWig (48)
tsv (19)
bam (18)
fastq (4)
tar (3)
Output types (11)
alignments (12)
minus strand signal of all reads (12)
minus strand signal of unique reads (12)
plus strand signal of all reads (12)
plus strand signal of unique reads (12)
transcript quantifications (8)
gene quantifications (6)
transcriptome alignments (6)
differential expression quantifications (5)
reads (4)
differential splicing quantifications (3)
Linked Publications (2)
Data Files (92)
| Accession | File Name | Stored Type | Output Type | Mapping Assembly | Size | Download | |
|---|---|---|---|---|---|---|---|
| ENCFF003MZI | ENCFF003MZI.bam | bam (alignments) | alignments | 3.8 GB | link | ||
| ENCFF158LCW | ENCFF158LCW.bam | bam (alignments) | alignments | 3.9 GB | link | ||
| ENCFF234PNU | ENCFF234PNU.bam | bam (alignments) | alignments | 4.0 GB | link | ||
| ENCFF339KJJ | ENCFF339KJJ.bam | bam (alignments) | alignments | 4.7 GB | link | ||
| ENCFF375HRX | ENCFF375HRX.bam | bam (alignments) | alignments | 3.8 GB | link | ||
| ENCFF454UXB | ENCFF454UXB.bam | bam (alignments) | alignments | 3.9 GB | link | ||
| ENCFF621AFW | ENCFF621AFW.bam | bam (alignments) | alignments | 3.3 GB | link | ||
| ENCFF730MBP | ENCFF730MBP.bam | bam (alignments) | alignments | 4.5 GB | link | ||
| ENCFF763PWB | ENCFF763PWB.bam | bam (alignments) | alignments | 3.3 GB | link | ||
| ENCFF778FNT | ENCFF778FNT.bam | bam (alignments) | alignments | 4.7 GB | link | ||
| ENCFF858XNX | ENCFF858XNX.bam | bam (alignments) | alignments | 4.0 GB | link | ||
| ENCFF960VQB | ENCFF960VQB.bam | bam (alignments) | alignments | 3.3 GB | link | ||
| ENCFF148OHQ | ENCFF148OHQ.bam | bam (transcriptome alignments) | transcriptome alignments | 4.6 GB | link | ||
| ENCFF336ZIM | ENCFF336ZIM.bam | bam (transcriptome alignments) | transcriptome alignments | 4.7 GB | link | ||
| ENCFF454LPD | ENCFF454LPD.bam | bam (transcriptome alignments) | transcriptome alignments | 5.1 GB | link | ||
| ENCFF625LXU | ENCFF625LXU.bam | bam (transcriptome alignments) | transcriptome alignments | 4.1 GB | link | ||
| ENCFF722JEO | ENCFF722JEO.bam | bam (transcriptome alignments) | transcriptome alignments | 4.5 GB | link | ||
| ENCFF827PMX | ENCFF827PMX.bam | bam (transcriptome alignments) | transcriptome alignments | 4.1 GB | link | ||
| ENCFF061ENZ | ENCFF061ENZ.bigWig | bigWig (minus strand signal of all reads) | minus strand signal of all reads | 86.1 MB | link | ||
| ENCFF139XBL | ENCFF139XBL.bigWig | bigWig (minus strand signal of all reads) | minus strand signal of all reads | 77.3 MB | link | ||
| ENCFF168FWD | ENCFF168FWD.bigWig | bigWig (minus strand signal of all reads) | minus strand signal of all reads | 81.8 MB | link | ||
| ENCFF574JLR | ENCFF574JLR.bigWig | bigWig (minus strand signal of all reads) | minus strand signal of all reads | 92.8 MB | link | ||
| ENCFF627AIT | ENCFF627AIT.bigWig | bigWig (minus strand signal of all reads) | minus strand signal of all reads | 104.1 MB | link | ||
| ENCFF649ZPL | ENCFF649ZPL.bigWig | bigWig (minus strand signal of all reads) | minus strand signal of all reads | 91.6 MB | link | ||
| ENCFF737MCO | ENCFF737MCO.bigWig | bigWig (minus strand signal of all reads) | minus strand signal of all reads | 91.8 MB | link | ||
| ENCFF752NVF | ENCFF752NVF.bigWig | bigWig (minus strand signal of all reads) | minus strand signal of all reads | 91.6 MB | link | ||
| ENCFF842UGN | ENCFF842UGN.bigWig | bigWig (minus strand signal of all reads) | minus strand signal of all reads | 104.0 MB | link | ||
| ENCFF854JGW | ENCFF854JGW.bigWig | bigWig (minus strand signal of all reads) | minus strand signal of all reads | 83.6 MB | link | ||
| ENCFF862GYG | ENCFF862GYG.bigWig | bigWig (minus strand signal of all reads) | minus strand signal of all reads | 101.3 MB | link | ||
| ENCFF931URP | ENCFF931URP.bigWig | bigWig (minus strand signal of all reads) | minus strand signal of all reads | 91.8 MB | link | ||
| ENCFF185DEZ | ENCFF185DEZ.bigWig | bigWig (minus strand signal of unique reads) | minus strand signal of unique reads | 92.4 MB | link | ||
| ENCFF204AYO | ENCFF204AYO.bigWig | bigWig (minus strand signal of unique reads) | minus strand signal of unique reads | 81.3 MB | link | ||
| ENCFF249MNS | ENCFF249MNS.bigWig | bigWig (minus strand signal of unique reads) | minus strand signal of unique reads | 76.7 MB | link | ||
| ENCFF275PXK | ENCFF275PXK.bigWig | bigWig (minus strand signal of unique reads) | minus strand signal of unique reads | 79.5 MB | link | ||
| ENCFF293IYU | ENCFF293IYU.bigWig | bigWig (minus strand signal of unique reads) | minus strand signal of unique reads | 81.4 MB | link | ||
| ENCFF370YAP | ENCFF370YAP.bigWig | bigWig (minus strand signal of unique reads) | minus strand signal of unique reads | 70.6 MB | link | ||
| ENCFF629KIN | ENCFF629KIN.bigWig | bigWig (minus strand signal of unique reads) | minus strand signal of unique reads | 91.2 MB | link | ||
| ENCFF753AAV | ENCFF753AAV.bigWig | bigWig (minus strand signal of unique reads) | minus strand signal of unique reads | 84.7 MB | link | ||
| ENCFF756FHD | ENCFF756FHD.bigWig | bigWig (minus strand signal of unique reads) | minus strand signal of unique reads | 82.3 MB | link | ||
| ENCFF786KQK | ENCFF786KQK.bigWig | bigWig (minus strand signal of unique reads) | minus strand signal of unique reads | 75.9 MB | link | ||
| ENCFF977QNH | ENCFF977QNH.bigWig | bigWig (minus strand signal of unique reads) | minus strand signal of unique reads | 92.2 MB | link | ||
| ENCFF980RLK | ENCFF980RLK.bigWig | bigWig (minus strand signal of unique reads) | minus strand signal of unique reads | 85.9 MB | link | ||
| ENCFF084OZD | ENCFF084OZD.bigWig | bigWig (plus strand signal of all reads) | plus strand signal of all reads | 79.3 MB | link | ||
| ENCFF111PKQ | ENCFF111PKQ.bigWig | bigWig (plus strand signal of all reads) | plus strand signal of all reads | 103.3 MB | link | ||
| ENCFF182VYM | ENCFF182VYM.bigWig | bigWig (plus strand signal of all reads) | plus strand signal of all reads | 106.1 MB | link | ||
| ENCFF221RMA | ENCFF221RMA.bigWig | bigWig (plus strand signal of all reads) | plus strand signal of all reads | 93.4 MB | link | ||
| ENCFF424YII | ENCFF424YII.bigWig | bigWig (plus strand signal of all reads) | plus strand signal of all reads | 83.6 MB | link | ||
| ENCFF429NVT | ENCFF429NVT.bigWig | bigWig (plus strand signal of all reads) | plus strand signal of all reads | 93.5 MB | link | ||
| ENCFF691ZQJ | ENCFF691ZQJ.bigWig | bigWig (plus strand signal of all reads) | plus strand signal of all reads | 106.1 MB | link | ||
| ENCFF757PII | ENCFF757PII.bigWig | bigWig (plus strand signal of all reads) | plus strand signal of all reads | 93.6 MB | link | ||
| ENCFF791FDJ | ENCFF791FDJ.bigWig | bigWig (plus strand signal of all reads) | plus strand signal of all reads | 95.1 MB | link | ||
| ENCFF792GNY | ENCFF792GNY.bigWig | bigWig (plus strand signal of all reads) | plus strand signal of all reads | 88.2 MB | link | ||
| ENCFF843XPW | ENCFF843XPW.bigWig | bigWig (plus strand signal of all reads) | plus strand signal of all reads | 85.8 MB | link | ||
| ENCFF898YNJ | ENCFF898YNJ.bigWig | bigWig (plus strand signal of all reads) | plus strand signal of all reads | 93.5 MB | link | ||
| ENCFF045EJP | ENCFF045EJP.bigWig | bigWig (plus strand signal of unique reads) | plus strand signal of unique reads | 89.4 MB | link | ||
| ENCFF089IKC | ENCFF089IKC.bigWig | bigWig (plus strand signal of unique reads) | plus strand signal of unique reads | 78.2 MB | link | ||
| ENCFF192HSR | ENCFF192HSR.bigWig | bigWig (plus strand signal of unique reads) | plus strand signal of unique reads | 84.2 MB | link | ||
| ENCFF404KAI | ENCFF404KAI.bigWig | bigWig (plus strand signal of unique reads) | plus strand signal of unique reads | 95.3 MB | link | ||
| ENCFF428LKL | ENCFF428LKL.bigWig | bigWig (plus strand signal of unique reads) | plus strand signal of unique reads | 94.1 MB | link | ||
| ENCFF515LGR | ENCFF515LGR.bigWig | bigWig (plus strand signal of unique reads) | plus strand signal of unique reads | 95.3 MB | link | ||
| ENCFF517NWB | ENCFF517NWB.bigWig | bigWig (plus strand signal of unique reads) | plus strand signal of unique reads | 82.4 MB | link | ||
| ENCFF551LCS | ENCFF551LCS.bigWig | bigWig (plus strand signal of unique reads) | plus strand signal of unique reads | 84.9 MB | link | ||
| ENCFF651CAU | ENCFF651CAU.bigWig | bigWig (plus strand signal of unique reads) | plus strand signal of unique reads | 79.3 MB | link | ||
| ENCFF789HCZ | ENCFF789HCZ.bigWig | bigWig (plus strand signal of unique reads) | plus strand signal of unique reads | 88.6 MB | link | ||
| ENCFF877DNA | ENCFF877DNA.bigWig | bigWig (plus strand signal of unique reads) | plus strand signal of unique reads | 73.2 MB | link | ||
| ENCFF880LYT | ENCFF880LYT.bigWig | bigWig (plus strand signal of unique reads) | plus strand signal of unique reads | 83.9 MB | link | ||
| ENCFF043FJK | ENCFF043FJK.fastq | fastq (reads) | reads | 2.4 GB | link | ||
| ENCFF143SRK | ENCFF143SRK.fastq | fastq (reads) | reads | 2.4 GB | link | ||
| ENCFF147QKG | ENCFF147QKG.fastq | fastq (reads) | reads | 2.1 GB | link | ||
| ENCFF457SHF | ENCFF457SHF.fastq | fastq (reads) | reads | 2.1 GB | link | ||
| ENCFF306LGJ | ENCFF306LGJ.tar | tar (differential splicing quantifications) | differential splicing quantifications | 4.9 MB | link | ||
| ENCFF426KUX | ENCFF426KUX.tar | tar (differential splicing quantifications) | differential splicing quantifications | 13.8 MB | link | ||
| ENCFF588UKB | ENCFF588UKB.tar | tar (differential splicing quantifications) | differential splicing quantifications | 3.9 MB | link | ||
| ENCFF164VVS | ENCFF164VVS.tsv | tsv (differential expression quantifications) | differential expression quantifications | 1.9 MB | link | ||
| ENCFF437NAB | ENCFF437NAB.tsv | tsv (differential expression quantifications) | differential expression quantifications | 1.7 MB | link | ||
| ENCFF696HGX | ENCFF696HGX.tsv | tsv (differential expression quantifications) | differential expression quantifications | 2.7 MB | link | ||
| ENCFF925RTK | ENCFF925RTK.tsv | tsv (differential expression quantifications) | differential expression quantifications | 5.4 MB | link | ||
| ENCFF958WPS | ENCFF958WPS.tsv | tsv (differential expression quantifications) | differential expression quantifications | 4.3 MB | link | ||
| ENCFF010QBP | ENCFF010QBP.tsv | tsv (gene quantifications) | gene quantifications | 10.4 MB | link | ||
| ENCFF024UCE | ENCFF024UCE.tsv | tsv (gene quantifications) | gene quantifications | 9.4 MB | link | ||
| ENCFF220XVG | ENCFF220XVG.tsv | tsv (gene quantifications) | gene quantifications | 10.4 MB | link | ||
| ENCFF249VFZ | ENCFF249VFZ.tsv | tsv (gene quantifications) | gene quantifications | 9.1 MB | link | ||
| ENCFF385YRV | ENCFF385YRV.tsv | tsv (gene quantifications) | gene quantifications | 9.4 MB | link | ||
| ENCFF914DOT | ENCFF914DOT.tsv | tsv (gene quantifications) | gene quantifications | 9.1 MB | link | ||
| ENCFF245KHH | ENCFF245KHH.tsv | tsv (transcript quantifications) | transcript quantifications | 25.3 MB | link | ||
| ENCFF278WOR | ENCFF278WOR.tsv | tsv (transcript quantifications) | transcript quantifications | 27.3 MB | link | ||
| ENCFF452NES | ENCFF452NES.tsv | tsv (transcript quantifications) | transcript quantifications | 25.3 MB | link | ||
| ENCFF563LEM | ENCFF563LEM.tsv | tsv (transcript quantifications) | transcript quantifications | 29.8 MB | link | ||
| ENCFF727DFK | ENCFF727DFK.tsv | tsv (transcript quantifications) | transcript quantifications | 29.8 MB | link | ||
| ENCFF805CXZ | ENCFF805CXZ.tsv | tsv (transcript quantifications) | transcript quantifications | 27.4 MB | link | ||
| ENCFF829VKE | ENCFF829VKE.tsv | tsv (transcript quantifications) | transcript quantifications | 24.9 MB | link | ||
| ENCFF962EUM | ENCFF962EUM.tsv | tsv (transcript quantifications) | transcript quantifications | 24.9 MB | link |