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A large-scale binding and functional map of human RNA-binding proteins.

Eric L Van Nostrand, Peter Freese, Gabriel A Pratt, Xiaofeng Wang, Xintao Wei, Rui Xiao, Steven M Blue, Jia-Yu Chen, Neal A L Cody, Daniel Dominguez, Sara Olson, Balaji Sundararaman, Lijun Zhan, Cassandra Bazile, Louis Philip Benoit Bouvrette, Julie Bergalet, Michael O Duff, Keri E Garcia, Chelsea Gelboin-Burkhart, Myles Hochman, Nicole J Lambert, Hairi Li, Michael P McGurk, Thai B Nguyen, Tsultrim Palden, Ines Rabano, Shashank Sathe, Rebecca Stanton, Amanda Su, Ruth Wang, Brian A Yee, Bing Zhou, Ashley L Louie, Stefan Aigner, Xiang-Dong Fu, Eric Lécuyer, Christopher B Burge, Brenton R Graveley, Gene W Yeo

Nature · 2020 · Vol. 583 (7818) · pp. 711-719

PubMed ↗ DOI ↗ PMC full text ↗

Abstract

Many proteins regulate the expression of genes by binding to specific regions encoded in the genome<sup>1</sup>. Here we introduce a new data set of RNA elements in the human genome that are recognized by RNA-binding proteins (RBPs), generated as part of the Encyclopedia of DNA Elements (ENCODE) project phase III. This class of regulatory elements functions only when transcribed into RNA, as they serve as the binding sites for RBPs that control post-transcriptional processes such as splicing, cleavage and polyadenylation, and the editing, localization, stability and translation of mRNAs. We describe the mapping and characterization of RNA elements recognized by a large collection of human RBPs in K562 and HepG2 cells. Integrative analyses using five assays identify RBP binding sites on RNA and chromatin in vivo, the in vitro binding preferences of RBPs, the function of RBP binding sites and the subcellular localization of RBPs, producing 1,223 replicated data sets for 356 RBPs. We describe the spectrum of RBP binding throughout the transcriptome and the connections between these interactions and various aspects of RNA biology, including RNA stability, splicing regulation and RNA localization. These data expand the catalogue of functional elements encoded in the human genome by the addition of a large set of elements that function at the RNA level by interacting with RBPs.

Linked datasets 1214

GSE107766 GSE · via ncbi_elink
GEO ↗

Best practices for eCLIP experiments and analysis [uncertain quality]

Homo sapiens

309 data files
FileTypeSize
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264_02.R1.fastq.gz OTHER 127.3 MB
264_INPUT_GAGATTCC-AGGCGAAG_L001_R1.unassigned.barcoded.fas… OTHER 287.1 MB
266_01.R1.fastq.gz OTHER 282.9 MB
266_02.R1.fastq.gz OTHER 289.5 MB
266_INPUT_ATTCAGAA-GGCTCTGA_L006_R1.unassigned.barcoded.fas… OTHER 646.0 MB
299_01.R1.fastq.gz OTHER 844.6 MB
299_02.R1.fastq.gz OTHER 1.2 GB
299_INPUT_ATTACTCG-AGG_L003_R1.unassigned.barcoded.fastq.gz OTHER 301.1 MB
332_01.R1.fastq.gz OTHER 385.2 MB
332_02.R1.fastq.gz OTHER 352.5 MB
332_INPUT_GAATTCGT-TATAGCCT_L002_R1.unassigned.barcoded.fas… OTHER 612.8 MB
355_01_4000.R1.fastq.gz OTHER 818.0 MB
355_02_4000.R1.fastq.gz OTHER 760.6 MB
355_INPUT_ATTCAGAA-AGGCGAAG_L001_R1.unassigned.barcoded.fas… OTHER 136.3 MB
366_01.R1.fastq.gz OTHER 487.5 MB
366_02.R1.fastq.gz OTHER 479.6 MB
366_INPUT_ATTACTCG-CCTATCCT_L006_R1.unassigned.barcoded.fas… OTHER 529.1 MB
415_01.R1.fastq.gz OTHER 475.3 MB
415_02.R1.fastq.gz OTHER 354.4 MB
415_INPUT_ATTCAGAA-ATAGAGGC_L006_R1.unassigned.barcoded.fas… OTHER 675.6 MB
417_01.R1.fastq.gz OTHER 913.4 MB
417_02.R1.fastq.gz OTHER 1.0 GB
417_INPUT_S56_L006_R1_001.unassigned.barcoded.fastq.gz OTHER 1017.0 MB
419_01.R1.fastq.gz OTHER 1.1 GB
419_02.R1.fastq.gz OTHER 1.0 GB
419_INPUT_S14_L002_R1_001.unassigned.barcoded.fastq.gz OTHER 932.5 MB
451_01_4000.R1.fastq.gz OTHER 880.5 MB
451_02_4000.R1.fastq.gz OTHER 1.6 GB
451_INPUT_4000_S82_L006_R1_001.unassigned.barcoded.fastq.gz OTHER 321.5 MB
459_01.R1.fastq.gz OTHER 881.2 MB
459_02.R1.fastq.gz OTHER 643.9 MB
459_INPUT_S30_L003_R1_001.unassigned.barcoded.fastq.gz OTHER 984.7 MB
463_01.R1.fastq.gz OTHER 315.9 MB
463_02.R1.fastq.gz OTHER 277.2 MB
463_INPUT_GAGATTCC-CCTATCCT_L003_R1.unassigned.barcoded.fas… OTHER 372.5 MB
471_01.R1.fastq.gz OTHER 250.4 MB
471_02.R1.fastq.gz OTHER 580.5 MB
471_INPUT_S28_L003_R1_001.unassigned.barcoded.fastq.gz OTHER 482.4 MB
485_01_4000.R1.fastq.gz OTHER 3.4 GB
485_02_4000.R1.fastq.gz OTHER 2.6 GB
485_INPUT_S42_L005_R1_001.unassigned.barcoded.fastq.gz OTHER 1.6 GB
496_01.R1.fastq.gz OTHER 1.1 GB
496_02.R1.fastq.gz OTHER 1.1 GB
496_INPUT_S69_L008_R1_001.unassigned.barcoded.fastq.gz OTHER 1.0 GB
498_01.R1.fastq.gz OTHER 896.5 MB
498_02.R1.fastq.gz OTHER 735.4 MB
498_INPUT_S46_L005_R1_001.unassigned.barcoded.fastq.gz OTHER 972.8 MB
499_01.R1.fastq.gz OTHER 982.6 MB
499_02.R1.fastq.gz OTHER 1016.3 MB
499_INPUT_S48_L005_R1_001.unassigned.barcoded.fastq.gz OTHER 850.1 MB
510_01.R1.fastq.gz OTHER 760.9 MB
510_02.R1.fastq.gz OTHER 765.4 MB
510_INPUT_S4_L001_R1_001.unassigned.barcoded.fastq.gz OTHER 1.1 GB
512_01.R1.fastq.gz OTHER 1.1 GB
512_02.R1.fastq.gz OTHER 1.1 GB
512_INPUT_S67_L008_R1_001.unassigned.barcoded.fastq.gz OTHER 1.1 GB
513_01.R1.fastq.gz OTHER 744.3 MB
513_02.R1.fastq.gz OTHER 767.8 MB
513_INPUT_S45_L004_R1_001.unassigned.barcoded.fastq.gz OTHER 998.9 MB
520_01.R1.fastq.gz OTHER 603.6 MB
520_02.R1.fastq.gz OTHER 706.1 MB
520_INPUT_S24_L003_R1_001.unassigned.barcoded.fastq.gz OTHER 747.8 MB
523_01.R1.fastq.gz OTHER 816.2 MB
523_02.R1.fastq.gz OTHER 910.6 MB
523_INPUT_S6_L001_R1_001.unassigned.barcoded.fastq.gz OTHER 996.8 MB
529_01.R1.fastq.gz OTHER 963.1 MB
529_02.R1.fastq.gz OTHER 688.0 MB
529_INPUT_S16_L002_R1_001.unassigned.barcoded.fastq.gz OTHER 852.8 MB
531_01.R1.fastq.gz OTHER 908.5 MB
531_02.R1.fastq.gz OTHER 875.8 MB
531_INPUT_S8_L001_R1_001.unassigned.barcoded.fastq.gz OTHER 933.7 MB
534_01.R1.fastq.gz OTHER 806.6 MB
534_02.R1.fastq.gz OTHER 500.0 MB
534_INPUT_S2_L001_R1_001.unassigned.barcoded.fastq.gz OTHER 644.6 MB
535_01.R1.fastq.gz OTHER 719.9 MB
535_02.R1.fastq.gz OTHER 866.2 MB
535_INPUT_S57_L006_R1_001.unassigned.barcoded.fastq.gz OTHER 695.3 MB
536_01.R1.fastq.gz OTHER 693.7 MB
536_02.R1.fastq.gz OTHER 687.3 MB
536_INPUT_S23_L003_R1_001.unassigned.barcoded.fastq.gz OTHER 866.0 MB
541_01.R1.fastq.gz OTHER 518.8 MB
541_02.R1.fastq.gz OTHER 698.8 MB
541_INPUT_S61_L007_R1_001.unassigned.barcoded.fastq.gz OTHER 607.0 MB
547_01.R1.fastq.gz OTHER 1020.2 MB
547_02.R1.fastq.gz OTHER 1.0 GB
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555_01.R1.fastq.gz OTHER 534.4 MB
555_02.R1.fastq.gz OTHER 977.8 MB
555_INPUT_S5_L001_R1_001.unassigned.barcoded.fastq.gz OTHER 1.3 GB
567_01.R1.fastq.gz OTHER 576.2 MB
567_02.R1.fastq.gz OTHER 684.5 MB
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588_01.R1.fastq.gz OTHER 726.0 MB
588_02.R1.fastq.gz OTHER 841.6 MB
588_INPUT_S52_L005_R1_001.unassigned.barcoded.fastq.gz OTHER 1.0 GB
598_01.R1.fastq.gz OTHER 513.2 MB
598_02.R1.fastq.gz OTHER 737.3 MB
598_INPUT_S18_L002_R1_001.unassigned.barcoded.fastq.gz OTHER 932.4 MB
609_01.R1.fastq.gz OTHER 1.2 GB
609_02.R1.fastq.gz OTHER 946.4 MB
609_INPUT_S39_L004_R1_001.unassigned.barcoded.fastq.gz OTHER 1.2 GB
611_01.R1.fastq.gz OTHER 745.3 MB
611_02.R1.fastq.gz OTHER 277.4 MB
611_INPUT_S30_L003_R1_001.unassigned.barcoded.fastq.gz OTHER 676.5 MB
613_01.R1.fastq.gz OTHER 764.7 MB
613_02.R1.fastq.gz OTHER 894.3 MB
613_INPUT_S44_L004_R1_001.unassigned.barcoded.fastq.gz OTHER 882.6 MB
616_01.R1.fastq.gz OTHER 757.2 MB
616_02.R1.fastq.gz OTHER 815.1 MB
616_INPUT_S6_L004_R1_001.unassigned.barcoded.fastq.gz OTHER 837.8 MB
626_01.R1.fastq.gz OTHER 908.0 MB
626_01.R2.fastq.gz OTHER 908.0 MB
626_02.R1.fastq.gz OTHER 679.2 MB
626_INPUT_S14_L005_R1_001.unassigned.barcoded.fastq.gz OTHER 736.2 MB
647_01.R1.fastq.gz OTHER 331.9 MB
647_02.R1.fastq.gz OTHER 1.3 GB
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658_01.R1.fastq.gz OTHER 550.1 MB
658_02.R1.fastq.gz OTHER 657.0 MB
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658_INPUT_S27_L003_R2_001.unassigned.barcoded.fastq.gz OTHER 835.0 MB
662_01.R1.fastq.gz OTHER 1.1 GB
662_02.R1.fastq.gz OTHER 882.5 MB
662_INPUT_S7_L006_R1_001.unassigned.barcoded.fastq.gz OTHER 679.5 MB
669_01.R1.fastq.gz OTHER 1.7 GB
669_02.R1.fastq.gz OTHER 201.3 MB
669_INPUT_S12_L002_R1_001.unassigned.barcoded.fastq.gz OTHER 788.4 MB
674_01.R1.fastq.gz OTHER 545.2 MB
674_02.R1.fastq.gz OTHER 574.0 MB
674_INPUT_S78_L004_R1_001.unassigned.barcoded.fastq.gz OTHER 806.4 MB
674_INPUT_S78_L004_R2_001.unassigned.barcoded.fastq.gz OTHER 806.4 MB
679_01.R1.fastq.gz OTHER 843.1 MB
679_02.R1.fastq.gz OTHER 604.8 MB
679_02.R2.fastq.gz OTHER 604.8 MB
679_INPUT_S31_L003_R1_001.unassigned.barcoded.fastq.gz OTHER 958.0 MB
706_01.R1.fastq.gz OTHER 1.1 GB
706_02.R1.fastq.gz OTHER 1.9 GB
706_INPUT_S49_L005_R1_001.unassigned.barcoded.fastq.gz OTHER 647.6 MB
714_01.R1.fastq.gz OTHER 397.0 MB
714_02.R1.fastq.gz OTHER 461.9 MB
714_INPUT_S34_L004_R1_001.unassigned.barcoded.fastq.gz OTHER 532.5 MB
721_01.R1.fastq.gz OTHER 1.1 GB
721_02.R1.fastq.gz OTHER 735.5 MB
721_INPUT_S77_L007_R1_001.unassigned.barcoded.fastq.gz OTHER 732.9 MB
724_01.R1.fastq.gz OTHER 770.7 MB
724_02.R1.fastq.gz OTHER 708.9 MB
724_INPUT_S83_L008_R1_001.unassigned.barcoded.fastq.gz OTHER 647.5 MB
739_01.R1.fastq.gz OTHER 911.7 MB
739_02.R1.fastq.gz OTHER 870.9 MB
739_INPUT_S112_L008_R1_001.unassigned.barcoded.fastq.gz OTHER 712.9 MB
761_01.R1.fastq.gz OTHER 612.5 MB
761_02.R1.fastq.gz OTHER 619.9 MB
761_02.R2.fastq.gz OTHER 619.9 MB
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SRR6458659_GSM2878474 OTHER 282.0 MB
SRR6458660_GSM2878475 OTHER 289.0 MB
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SRR6458662_GSM2878477 OTHER 127.0 MB
SRR6458663_GSM2878478 OTHER 844.0 MB
SRR6458664_GSM2878479 OTHER 1.2 GB
SRR6458665_GSM2878480 OTHER 315.0 MB
SRR6458666_GSM2878481 OTHER 277.0 MB
SRR6458667_GSM2878482 OTHER 1.1 GB
SRR6458668_GSM2878483 OTHER 1.0 GB
SRR6458669_GSM2878484 OTHER 1.1 GB
SRR6458670_GSM2878485 OTHER 1.1 GB
SRR6458671_GSM2878486 OTHER 896.0 MB
SRR6458672_GSM2878487 OTHER 735.0 MB
SRR6458673_GSM2878488 OTHER 982.0 MB
SRR6458674_GSM2878489 OTHER 1016.0 MB
SRR6458675_GSM2878490 OTHER 1.1 GB
SRR6458676_GSM2878491 OTHER 1.0 GB
SRR6458677_GSM2878492 OTHER 881.0 MB
SRR6458678_GSM2878493 OTHER 643.0 MB
SRR6458679_GSM2878494 OTHER 250.0 MB
SRR6458680_GSM2878495 OTHER 580.0 MB
SRR6458681_GSM2878496 OTHER 760.0 MB
SRR6458682_GSM2878497 OTHER 765.0 MB
SRR6458683_GSM2878498 OTHER 744.0 MB
SRR6458684_GSM2878499 OTHER 767.0 MB
SRR6458685_GSM2878500 OTHER 719.0 MB
SRR6458686_GSM2878501 OTHER 866.0 MB
SRR6458687_GSM2878502 OTHER 693.0 MB
SRR6458688_GSM2878503 OTHER 687.0 MB
SRR6458689_GSM2878504 OTHER 518.0 MB
SRR6458690_GSM2878505 OTHER 698.0 MB
SRR6458691_GSM2878506 OTHER 1020.0 MB
SRR6458692_GSM2878507 OTHER 1.0 GB
SRR6458693_GSM2878508 OTHER 818.0 MB
SRR6458694_GSM2878509 OTHER 760.0 MB
SRR6458695_GSM2878510 OTHER 806.0 MB
SRR6458696_GSM2878511 OTHER 499.0 MB
SRR6458697_GSM2878512 OTHER 513.0 MB
SRR6458698_GSM2878513 OTHER 737.0 MB
SRR6458699_GSM2878514 OTHER 603.0 MB
SRR6458700_GSM2878515 OTHER 706.0 MB
SRR6458701_GSM2878516 OTHER 816.0 MB
SRR6458702_GSM2878517 OTHER 910.0 MB
SRR6458703_GSM2878518 OTHER 745.0 MB
SRR6458704_GSM2878519 OTHER 277.0 MB
SRR6458705_GSM2878520 OTHER 757.0 MB
SRR6458706_GSM2878521 OTHER 815.0 MB
SRR6458707_GSM2878522 OTHER 880.0 MB
SRR6458708_GSM2878523 OTHER 1.6 GB
SRR6458709_GSM2878524 OTHER 3.4 GB
SRR6458710_GSM2878525 OTHER 2.6 GB
SRR6458711_GSM2878526 OTHER 534.0 MB
SRR6458712_GSM2878527 OTHER 977.0 MB
SRR6458713_GSM2878528 OTHER 1.2 GB
SRR6458714_GSM2878529 OTHER 946.0 MB
SRR6458715_GSM2878530 OTHER 545.0 MB
SRR6458716_GSM2878531 OTHER 574.0 MB
SRR6458717_GSM2878532 OTHER 1.1 GB
SRR6458718_GSM2878533 OTHER 735.0 MB
SRR6458719_GSM2878534 OTHER 770.0 MB
SRR6458720_GSM2878535 OTHER 708.0 MB
SRR6458721_GSM2878536 OTHER 1.1 GB
SRR6458722_GSM2878537 OTHER 882.0 MB
SRR6458723_GSM2878538 OTHER 1.1 GB
SRR6458724_GSM2878539 OTHER 1.9 GB
SRR6458725_GSM2878540 OTHER 911.0 MB
SRR6458726_GSM2878541 OTHER 870.0 MB
SRR6458727_GSM2878542 OTHER 1.7 GB
SRR6458728_GSM2878543 OTHER 201.0 MB
SRR6458729_GSM2878544 OTHER 287.0 MB
SRR6458730_GSM2878545 OTHER 645.0 MB
SRR6458731_GSM2878546 OTHER 301.0 MB
SRR6458732_GSM2878547 OTHER 136.0 MB
SRR6458733_GSM2878548 OTHER 932.0 MB
SRR6458734_GSM2878549 OTHER 321.0 MB
SRR6458735_GSM2878550 OTHER 984.0 MB
SRR6458736_GSM2878551 OTHER 372.0 MB
SRR6458737_GSM2878552 OTHER 482.0 MB
SRR6458738_GSM2878553 OTHER 1.6 GB
SRR6458739_GSM2878554 OTHER 1.0 GB
SRR6458740_GSM2878555 OTHER 972.0 MB
SRR6458741_GSM2878556 OTHER 850.0 MB
SRR6458742_GSM2878557 OTHER 1.1 GB
SRR6458743_GSM2878558 OTHER 1.1 GB
SRR6458744_GSM2878559 OTHER 998.0 MB
SRR6458745_GSM2878560 OTHER 747.0 MB
SRR6458746_GSM2878561 OTHER 996.0 MB
SRR6458747_GSM2878562 OTHER 644.0 MB
SRR6458748_GSM2878563 OTHER 695.0 MB
SRR6458749_GSM2878564 OTHER 865.0 MB
SRR6458750_GSM2878565 OTHER 606.0 MB
SRR6458751_GSM2878566 OTHER 1.1 GB
SRR6458752_GSM2878567 OTHER 1.3 GB
SRR6458753_GSM2878568 OTHER 932.0 MB
SRR6458754_GSM2878569 OTHER 1.2 GB
SRR6458755_GSM2878570 OTHER 676.0 MB
SRR6458756_GSM2878571 OTHER 837.0 MB
SRR6458757_GSM2878572 OTHER 679.0 MB
SRR6458758_GSM2878573 OTHER 788.0 MB
SRR6458759_GSM2878574 OTHER 806.0 MB
SRR6458760_GSM2878575 OTHER 647.0 MB
SRR6458761_GSM2878576 OTHER 732.0 MB
SRR6458762 OTHER 647.5 MB
SRR6458762_GSM2878577 OTHER 647.0 MB
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SRR7889842_GSM3398052 OTHER 385.0 MB
SRR7889843_GSM3398053 OTHER 352.0 MB
SRR7889844_GSM3398054 OTHER 487.0 MB
SRR7889845_GSM3398055 OTHER 479.0 MB
SRR7889846_GSM3398056 OTHER 475.0 MB
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SRR7889847_GSM3398057 OTHER 354.0 MB
SRR7889848_GSM3398058 OTHER 913.0 MB
SRR7889849_GSM3398059 OTHER 1.0 GB
SRR7889850_GSM3398060 OTHER 576.0 MB
SRR7889851_GSM3398061 OTHER 684.0 MB
SRR7889852_GSM3398062 OTHER 963.0 MB
SRR7889853_GSM3398063 OTHER 688.0 MB
SRR7889854_GSM3398064 OTHER 908.0 MB
SRR7889855_GSM3398065 OTHER 875.0 MB
SRR7889856_GSM3398066 OTHER 764.0 MB
SRR7889857_GSM3398067 OTHER 894.0 MB
SRR7889858_GSM3398068 OTHER 907.0 MB
SRR7889859_GSM3398069 OTHER 679.0 MB
SRR7889860_GSM3398070 OTHER 725.0 MB
SRR7889861_GSM3398071 OTHER 841.0 MB
SRR7889862_GSM3398072 OTHER 550.0 MB
SRR7889863_GSM3398073 OTHER 656.0 MB
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SRR7889865_GSM3398075 OTHER 604.0 MB
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SRR7889867_GSM3398077 OTHER 461.0 MB
SRR7889868_GSM3398078 OTHER 331.0 MB
SRR7889869_GSM3398079 OTHER 1.3 GB
SRR7889870_GSM3398080 OTHER 612.0 MB
SRR7889871_GSM3398081 OTHER 619.0 MB
SRR7889872_GSM3398082 OTHER 612.0 MB
SRR7889873_GSM3398083 OTHER 529.0 MB
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SRR7889875 OTHER 1017.0 MB
SRR7889875_GSM3398085 OTHER 1017.0 MB
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SRR7889878_GSM3398088 OTHER 798.0 MB
SRR7889879 OTHER 1.0 GB
SRR7889879_GSM3398089 OTHER 1.0 GB
SRR7889880_GSM3398090 OTHER 882.0 MB
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SRR7889883_GSM3398093 OTHER 834.0 MB
SRR7889884_GSM3398094 OTHER 957.0 MB
SRR7889885_GSM3398095 OTHER 532.0 MB
SRR7889886_GSM3398096 OTHER 760.0 MB
GSE107767 GSE · via ncbi_elink
GEO ↗

Best practices for eCLIP experiments and analysis [poor quality]

Homo sapiens

457 data files
FileTypeSize
202_01.R1.fastq.gz OTHER 97.0 MB
202_02.R1.fastq.gz OTHER 360.5 MB
214_01.R1.fastq.gz OTHER 300.1 MB
214_INPUT_GAATTCGT-ATAGAGGC_L003_R1.unassigned.barcoded.fas… OTHER 584.6 MB
219_01.R1.fastq.gz OTHER 372.7 MB
219_02.R1.fastq.gz OTHER 212.9 MB
219_INPUT_GAATTCGT-AGGCGAAG_L003_R1.unassigned.barcoded.fas… OTHER 436.6 MB
225_01.R1.fastq.gz OTHER 145.0 MB
225_02.R1.fastq.gz OTHER 36.0 MB
225_INPUT_TCCGGAGA-TAATCTTA_L001_R1.unassigned.barcoded.fas… OTHER 386.5 MB
232_01.R1.fastq.gz OTHER 367.4 MB
232_02.R1.fastq.gz OTHER 301.5 MB
232_INPUT_GAATTCGT-AGGCGAAG_L002_R1.unassigned.barcoded.fas… OTHER 501.5 MB
234_01.R1.fastq.gz OTHER 381.4 MB
246_01.R1.fastq.gz OTHER 444.2 MB
246_02.R1.fastq.gz OTHER 452.3 MB
246_INPUT_GAGATTCC-GGCTCTGA_L003_R1.unassigned.barcoded.fas… OTHER 777.9 MB
254_01.R1.fastq.gz OTHER 356.9 MB
254_02.R1.fastq.gz OTHER 339.6 MB
254_INPUT_GAGATTCC-TAATCTTA_L006_R1.unassigned.barcoded.fas… OTHER 510.2 MB
255_01.R1.fastq.gz OTHER 549.4 MB
255_02.R1.fastq.gz OTHER 443.0 MB
255_INPUT_ATTACTCG-TATAGCCT_L004_R1.unassigned.barcoded.fas… OTHER 728.4 MB
280_01.R1.fastq.gz OTHER 447.1 MB
280_02.R1.fastq.gz OTHER 501.8 MB
280_INPUT_ATTACTCG-TATAGCCT_L001_R1.unassigned.barcoded.fas… OTHER 634.1 MB
290_01.R1.fastq.gz OTHER 586.3 MB
290_02.R1.fastq.gz OTHER 869.8 MB
290_INPUT_ATTACTCG-TATAGCCT_L001_R1.unassigned.barcoded.fas… OTHER 914.9 MB
300_01.R1.fastq.gz OTHER 463.7 MB
300_02.R1.fastq.gz OTHER 400.1 MB
300_INPUT_CGCTCATT-TAATCTTA_L001_R1.unassigned.barcoded.fas… OTHER 819.9 MB
317_01.R1.fastq.gz OTHER 352.3 MB
317_02.R1.fastq.gz OTHER 284.4 MB
317_INPUT_GAGATTCC-ATAGAGGC_L002_R1.unassigned.barcoded.fas… OTHER 678.6 MB
323_01_4000.R1.fastq.gz OTHER 805.4 MB
323_02_4000.R1.fastq.gz OTHER 832.8 MB
323_INPUT_TCCGGAGA-ATAGAGGC_L001_R1.unassigned.barcoded.fas… OTHER 593.9 MB
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327_02.R1.fastq.gz OTHER 323.3 MB
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SRR6458945_GSM2878760 OTHER 817.0 MB
SRR6458946_GSM2878761 OTHER 841.0 MB
SRR6458947_GSM2878762 OTHER 1.2 GB
SRR6458948_GSM2878763 OTHER 283.0 MB
SRR6458949_GSM2878764 OTHER 869.0 MB
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SRR6458951_GSM2878766 OTHER 776.0 MB
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SRR6458954_GSM2878769 OTHER 602.0 MB
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SRR6458957_GSM2878772 OTHER 571.0 MB
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SRR6458960_GSM2878775 OTHER 562.0 MB
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SRR6458962_GSM2878777 OTHER 769.0 MB
SRR6458963_GSM2878778 OTHER 1017.0 MB
SRR6458964_GSM2878779 OTHER 588.0 MB
SRR6458965_GSM2878780 OTHER 1.0 GB
SRR6458966_GSM2878781 OTHER 4.8 GB
SRR6458967_GSM2878782 OTHER 377.0 MB
SRR6458968_GSM2878783 OTHER 1.2 GB
SRR6458970_GSM2878785 OTHER 811.0 MB
SRR6458971_GSM2878786 OTHER 887.0 MB
SRR6458972_GSM2878787 OTHER 468.0 MB
SRR6458973_GSM2878788 OTHER 882.0 MB
SRR6458974_GSM2878789 OTHER 1.3 GB
SRR6458975_GSM2878790 OTHER 1018.0 MB
SRR6458976_GSM2878791 OTHER 1.0 GB
SRR6458977_GSM2878792 OTHER 1003.0 MB
SRR6458978_GSM2878793 OTHER 1.1 GB
SRR6458979_GSM2878794 OTHER 319.0 MB
SRR6458980_GSM2878795 OTHER 1009.0 MB
SRR6458981_GSM2878796 OTHER 1.1 GB
SRR6458982_GSM2878797 OTHER 822.0 MB
SRR6458983_GSM2878798 OTHER 775.0 MB
SRR6458984_GSM2878799 OTHER 761.0 MB
SRR6458985_GSM2878800 OTHER 818.0 MB
SRR6458986_GSM2878801 OTHER 832.0 MB
SRR6458987_GSM2878802 OTHER 1.1 GB
SRR6458988_GSM2878803 OTHER 1.1 GB
SRR7883042_GSM3396755 OTHER 447.0 MB
SRR7883043_GSM3396756 OTHER 501.0 MB
SRR7883044_GSM3396757 OTHER 444.0 MB
SRR7883045_GSM3396758 OTHER 452.0 MB
SRR7883046_GSM3396759 OTHER 777.0 MB
SRR7883047_GSM3396760 OTHER 634.0 MB
GSE107768 GSE · via ncbi_elink
GEO ↗

Best practices for eCLIP experiments and analysis

Homo sapiens

ENCSR352STY ENCSR · via encode_api

eCLIP experiment on HepG2 against SSB

Homo sapiens

26 data files
FileTypeSize
ENCFF073JBT.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 15.6 MB
ENCFF079NYX.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 20.6 MB
ENCFF097KHT.bed bed (peaks); assembly: GRCh38 1.0 MB
ENCFF120ZCK.fastq fastq (reads) 1.2 GB
ENCFF242WIV.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 19.9 MB
ENCFF264DBW.bam bam (alignments); assembly: GRCh38 517.1 MB
ENCFF329OZW.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 20.4 MB
ENCFF343FAD.bam bam (alignments); assembly: GRCh38 417.4 MB
ENCFF383JPP.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 16.3 MB
ENCFF432KDL.fastq fastq (reads) 1.3 GB
ENCFF527CYH.fastq fastq (reads) 974.0 MB
ENCFF565RQI.bed bed (peaks); assembly: hg19 2.3 KB
ENCFF571EFF.bigBed bigBed (peaks); assembly: hg19 1.5 MB
ENCFF575EPO.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 21.2 MB
ENCFF681BGR.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 16.0 MB
ENCFF689JPE.bigBed bigBed (peaks); assembly: GRCh38 1.8 MB
ENCFF697NZQ.bed bed (peaks); assembly: GRCh38 851.9 KB
ENCFF746AWW.bam bam (alignments); assembly: hg19 541.8 MB
ENCFF746RLH.bed bed (peaks); assembly: hg19 1.1 MB
ENCFF763VGI.bigBed bigBed (peaks); assembly: hg19 1.8 MB
ENCFF828WCR.bed bed (peaks); assembly: hg19 869.4 KB
ENCFF848JWA.bed bed (peaks); assembly: GRCh38 2.3 KB
ENCFF856EEK.bam bam (alignments); assembly: hg19 442.0 MB
ENCFF889CTF.bigBed bigBed (peaks); assembly: GRCh38 1.5 MB
ENCFF916XEL.fastq fastq (reads) 1.1 GB
ENCFF934BKN.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 16.7 MB
ENCSR356MSW ENCSR · via encode_api

eCLIP experiment on K562 against SSB

Homo sapiens

26 data files
FileTypeSize
ENCFF022SQB.bam bam (alignments); assembly: hg19 185.1 MB
ENCFF118XXW.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 3.6 MB
ENCFF131CHH.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 3.6 MB
ENCFF203AWR.bed bed (peaks); assembly: GRCh38 95.9 KB
ENCFF205JFL.bam bam (alignments); assembly: GRCh38 156.6 MB
ENCFF258RPS.fastq fastq (reads) 419.0 MB
ENCFF289TDT.bigBed bigBed (peaks); assembly: hg19 221.3 KB
ENCFF324PNB.bed bed (peaks); assembly: hg19 4.2 KB
ENCFF328KJW.bed bed (peaks); assembly: GRCh38 4.7 KB
ENCFF342RHD.bed bed (peaks); assembly: GRCh38 94.9 KB
ENCFF411IAE.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 3.5 MB
ENCFF464BIY.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 3.8 MB
ENCFF468FTA.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 3.7 MB
ENCFF516BAM.bigBed bigBed (peaks); assembly: hg19 216.3 KB
ENCFF566TDO.bam bam (alignments); assembly: GRCh38 177.0 MB
ENCFF623ASO.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 3.4 MB
ENCFF659FQL.bam bam (alignments); assembly: hg19 161.2 MB
ENCFF676BHH.fastq fastq (reads) 489.2 MB
ENCFF677KYJ.fastq fastq (reads) 504.3 MB
ENCFF704NUD.bed bed (peaks); assembly: hg19 101.5 KB
ENCFF732TUI.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 3.6 MB
ENCFF734LCT.fastq fastq (reads) 414.5 MB
ENCFF805UMW.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 3.9 MB
ENCFF868DYD.bigBed bigBed (peaks); assembly: GRCh38 212.0 KB
ENCFF871PJK.bed bed (peaks); assembly: hg19 99.0 KB
ENCFF903AED.bigBed bigBed (peaks); assembly: GRCh38 214.9 KB
ENCSR038JME ENCSR · via encode_api

eCLIP experiment on K562 against WRN

Homo sapiens

26 data files
FileTypeSize
ENCFF109LYL.bed bed (peaks); assembly: hg19 605.4 KB
ENCFF128BXK.bigBed bigBed (peaks); assembly: GRCh38 1.1 MB
ENCFF137XEJ.fastq fastq (reads) 362.9 MB
ENCFF138IUK.bed bed (peaks); assembly: hg19 569.1 KB
ENCFF208NTO.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 4.8 MB
ENCFF254ATY.bigBed bigBed (peaks); assembly: hg19 1.1 MB
ENCFF264AQP.bam bam (alignments); assembly: hg19 108.3 MB
ENCFF269MTH.bigBed bigBed (peaks); assembly: GRCh38 1.2 MB
ENCFF289NNH.bed bed (peaks); assembly: GRCh38 607.6 KB
ENCFF318MEI.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 5.6 MB
ENCFF351RZD.bigBed bigBed (peaks); assembly: hg19 1.2 MB
ENCFF379ORN.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 5.9 MB
ENCFF404HHM.bed bed (peaks); assembly: GRCh38 3.0 KB
ENCFF480XQJ.bam bam (alignments); assembly: hg19 80.2 MB
ENCFF494TID.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 4.7 MB
ENCFF526BOW.bam bam (alignments); assembly: GRCh38 106.3 MB
ENCFF548GPO.fastq fastq (reads) 301.4 MB
ENCFF553UKA.fastq fastq (reads) 378.1 MB
ENCFF556SMF.bed bed (peaks); assembly: GRCh38 566.1 KB
ENCFF632GZB.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 5.0 MB
ENCFF673VLP.fastq fastq (reads) 317.5 MB
ENCFF773BDV.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 5.9 MB
ENCFF838CRT.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 5.0 MB
ENCFF901PRL.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 5.6 MB
ENCFF938JQE.bed bed (peaks); assembly: hg19 3.2 KB
ENCFF945HNC.bam bam (alignments); assembly: GRCh38 79.0 MB
ENCSR128BUO ENCSR · via encode_api

eCLIP control experiment on HepG2 against BCLAF1

Homo sapiens

8 data files
FileTypeSize
ENCFF096GCS.fastq fastq (reads) 1.1 GB
ENCFF173AOK.fastq fastq (reads) 1.0 GB
ENCFF291XOO.bam bam (alignments); assembly: hg19 983.6 MB
ENCFF504TLC.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 44.4 MB
ENCFF582QMI.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 44.7 MB
ENCFF660KZN.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 43.2 MB
ENCFF777TFC.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 43.9 MB
ENCFF894HGK.bam bam (alignments); assembly: GRCh38 1000.5 MB
ENCSR145NLR ENCSR · via encode_api

eCLIP experiment on K562 against DDX51

Homo sapiens

26 data files
FileTypeSize
ENCFF042FAB.bed bed (peaks); assembly: hg19 586.9 KB
ENCFF072MQR.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 5.2 MB
ENCFF100CNX.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 6.9 MB
ENCFF143MWR.fastq fastq (reads) 526.6 MB
ENCFF146YPF.bed bed (peaks); assembly: hg19 10.9 KB
ENCFF230UVW.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 6.8 MB
ENCFF258EAW.fastq fastq (reads) 626.8 MB
ENCFF286QNA.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 5.5 MB
ENCFF323COR.bigBed bigBed (peaks); assembly: GRCh38 1.0 MB
ENCFF402STK.fastq fastq (reads) 578.5 MB
ENCFF420FBX.bigBed bigBed (peaks); assembly: hg19 1.1 MB
ENCFF421HDU.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 5.8 MB
ENCFF447BHR.fastq fastq (reads) 492.7 MB
ENCFF475ZZT.bed bed (peaks); assembly: hg19 697.6 KB
ENCFF486XDM.bam bam (alignments); assembly: GRCh38 104.7 MB
ENCFF536UEG.bam bam (alignments); assembly: hg19 139.3 MB
ENCFF563HWS.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 5.4 MB
ENCFF582OJZ.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 6.4 MB
ENCFF584CZB.bed bed (peaks); assembly: GRCh38 555.7 KB
ENCFF633XON.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 6.5 MB
ENCFF799ERK.bed bed (peaks); assembly: GRCh38 10.3 KB
ENCFF827UJU.bigBed bigBed (peaks); assembly: GRCh38 1.2 MB
ENCFF924PFV.bam bam (alignments); assembly: hg19 111.3 MB
ENCFF931ZGZ.bam bam (alignments); assembly: GRCh38 135.7 MB
ENCFF965UZI.bed bed (peaks); assembly: GRCh38 684.7 KB
ENCFF998TMB.bigBed bigBed (peaks); assembly: hg19 1.3 MB
ENCSR624CUX ENCSR · via encode_api

eCLIP control experiment on HepG2 against ZNF800

Homo sapiens

8 data files
FileTypeSize
ENCFF045KYM.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 19.7 MB
ENCFF069BLG.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 20.0 MB
ENCFF356RSL.fastq fastq (reads) 528.5 MB
ENCFF362SXF.fastq fastq (reads) 514.2 MB
ENCFF653PSU.bam bam (alignments); assembly: GRCh38 366.8 MB
ENCFF719QDV.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 19.7 MB
ENCFF918MJA.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 19.4 MB
ENCFF966FGY.bam bam (alignments); assembly: hg19 362.2 MB
ENCSR680HYD ENCSR · via encode_api

eCLIP control experiment on K562 against SSB

Homo sapiens

8 data files
FileTypeSize
ENCFF453TEC.bam bam (alignments); assembly: GRCh38 189.9 MB
ENCFF528MBL.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 6.3 MB
ENCFF642QNB.fastq fastq (reads) 706.3 MB
ENCFF662VUV.bam bam (alignments); assembly: hg19 186.8 MB
ENCFF738ICV.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 6.2 MB
ENCFF827HWK.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 6.4 MB
ENCFF830PVF.fastq fastq (reads) 664.9 MB
ENCFF962JWZ.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 6.1 MB
ENCSR001KKZ ENCSR · via encode_api

eCLIP experiment on K562 against PHF6

Homo sapiens

26 data files
FileTypeSize
ENCFF016IHL.bed bed (peaks); assembly: hg19 489.1 KB
ENCFF042XJN.fastq fastq (reads) 660.3 MB
ENCFF075JQB.bed bed (peaks); assembly: GRCh38 395.1 KB
ENCFF097AME.bigBed bigBed (peaks); assembly: GRCh38 895.2 KB
ENCFF153JFX.bam bam (alignments); assembly: hg19 94.6 MB
ENCFF165KAR.fastq fastq (reads) 613.4 MB
ENCFF213NMK.bam bam (alignments); assembly: hg19 114.4 MB
ENCFF264YFE.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 5.3 MB
ENCFF282OCB.bam bam (alignments); assembly: GRCh38 111.6 MB
ENCFF396TZQ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 5.0 MB
ENCFF461CTN.fastq fastq (reads) 604.0 MB
ENCFF471BTA.bigBed bigBed (peaks); assembly: hg19 813.5 KB
ENCFF543URO.bigBed bigBed (peaks); assembly: GRCh38 773.8 KB
ENCFF546FDP.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 5.7 MB
ENCFF550QJJ.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 4.8 MB
ENCFF588ITW.bed bed (peaks); assembly: GRCh38 15.7 KB
ENCFF631PTI.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 5.6 MB
ENCFF667OVG.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 4.7 MB
ENCFF719WMB.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 4.5 MB
ENCFF877HWY.fastq fastq (reads) 642.0 MB
ENCFF885ZMH.bam bam (alignments); assembly: GRCh38 89.4 MB
ENCFF941KTS.bigBed bigBed (peaks); assembly: hg19 906.7 KB
ENCFF957JDY.bed bed (peaks); assembly: GRCh38 481.2 KB
ENCFF958EFT.bed bed (peaks); assembly: hg19 15.5 KB
ENCFF967JAT.bed bed (peaks); assembly: hg19 421.0 KB
ENCFF972SRF.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 5.4 MB
ENCSR977OXG ENCSR · via encode_api

eCLIP experiment on HepG2 against PRPF4

Homo sapiens

26 data files
FileTypeSize
ENCFF041DDW.fastq fastq (reads) 501.2 MB
ENCFF080HMO.bam bam (alignments); assembly: GRCh38 417.0 MB
ENCFF104NFC.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 25.7 MB
ENCFF224ZJZ.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 24.8 MB
ENCFF227EJF.bed bed (peaks); assembly: GRCh38 209.5 KB
ENCFF270OMS.bed bed (peaks); assembly: hg19 2.0 MB
ENCFF292ZPN.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 25.4 MB
ENCFF331HUW.bed bed (peaks); assembly: GRCh38 1.7 MB
ENCFF335COJ.bigBed bigBed (peaks); assembly: GRCh38 4.0 MB
ENCFF344HRR.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 25.1 MB
ENCFF383UPL.bed bed (peaks); assembly: hg19 1.8 MB
ENCFF394GOQ.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 19.1 MB
ENCFF397TFH.fastq fastq (reads) 447.8 MB
ENCFF404WOP.bam bam (alignments); assembly: GRCh38 580.2 MB
ENCFF464UMO.bigBed bigBed (peaks); assembly: GRCh38 3.5 MB
ENCFF485KCC.bed bed (peaks); assembly: hg19 207.5 KB
ENCFF535IJL.bigBed bigBed (peaks); assembly: hg19 3.5 MB
ENCFF541DXC.fastq fastq (reads) 441.4 MB
ENCFF601DRB.fastq fastq (reads) 392.1 MB
ENCFF686FQE.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 19.8 MB
ENCFF690QDN.bam bam (alignments); assembly: hg19 585.2 MB
ENCFF700QBU.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 20.5 MB
ENCFF714PLV.bam bam (alignments); assembly: hg19 433.8 MB
ENCFF727YRW.bigBed bigBed (peaks); assembly: hg19 4.0 MB
ENCFF748DMH.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 19.8 MB
ENCFF882APR.bed bed (peaks); assembly: GRCh38 2.0 MB
ENCSR484LAB ENCSR · via encode_api

eCLIP experiment on K562 against SAFB

Homo sapiens

26 data files
FileTypeSize
ENCFF067WCL.bed bed (peaks); assembly: GRCh38 2.3 MB
ENCFF127IJD.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 37.7 MB
ENCFF198ESK.fastq fastq (reads) 524.8 MB
ENCFF247JMS.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 37.7 MB
ENCFF251LGV.bam bam (alignments); assembly: hg19 829.0 MB
ENCFF397KME.bigBed bigBed (peaks); assembly: GRCh38 3.4 MB
ENCFF407GVQ.bed bed (peaks); assembly: hg19 2.2 MB
ENCFF417KUY.bed bed (peaks); assembly: GRCh38 2.2 MB
ENCFF484YDH.fastq fastq (reads) 527.2 MB
ENCFF514SFZ.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 37.1 MB
ENCFF607DEZ.fastq fastq (reads) 540.5 MB
ENCFF639MAG.bed bed (peaks); assembly: hg19 2.3 MB
ENCFF662PGM.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 35.9 MB
ENCFF686FKT.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 35.7 MB
ENCFF722JMT.bam bam (alignments); assembly: GRCh38 822.0 MB
ENCFF749GVN.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 36.4 MB
ENCFF759SQV.bam bam (alignments); assembly: hg19 836.3 MB
ENCFF831IUW.bigBed bigBed (peaks); assembly: hg19 3.3 MB
ENCFF873GYP.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 36.9 MB
ENCFF929GHQ.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 37.1 MB
ENCFF934PXE.bed bed (peaks); assembly: hg19 10.9 KB
ENCFF948MKY.bigBed bigBed (peaks); assembly: GRCh38 4.4 MB
ENCFF953WTP.bed bed (peaks); assembly: GRCh38 11.4 KB
ENCFF966QLX.bigBed bigBed (peaks); assembly: hg19 4.4 MB
ENCFF973VXO.bam bam (alignments); assembly: GRCh38 828.6 MB
ENCFF983WHV.fastq fastq (reads) 544.5 MB
ENCSR922WJV ENCSR · via encode_api

eCLIP experiment on K562 against PCBP1

Homo sapiens

26 data files
FileTypeSize
ENCFF002VKC.bigBed bigBed (peaks); assembly: GRCh38 753.2 KB
ENCFF010ECT.fastq fastq (reads) 415.5 MB
ENCFF022GSN.bed bed (peaks); assembly: hg19 404.5 KB
ENCFF030CFW.bam bam (alignments); assembly: hg19 93.6 MB
ENCFF041ETC.bam bam (alignments); assembly: GRCh38 88.8 MB
ENCFF121XCN.bed bed (peaks); assembly: GRCh38 451.1 KB
ENCFF175YZC.bam bam (alignments); assembly: hg19 100.8 MB
ENCFF202IKH.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 4.7 MB
ENCFF205HUD.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 5.1 MB
ENCFF274AON.bigBed bigBed (peaks); assembly: GRCh38 849.7 KB
ENCFF345TZP.bam bam (alignments); assembly: GRCh38 96.9 MB
ENCFF363NBL.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 4.6 MB
ENCFF371IVW.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 4.8 MB
ENCFF381ZBA.bed bed (peaks); assembly: hg19 465.8 KB
ENCFF431FMQ.bed bed (peaks); assembly: hg19 48.8 KB
ENCFF466YKR.fastq fastq (reads) 421.4 MB
ENCFF552AOR.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 4.9 MB
ENCFF600EPX.bigBed bigBed (peaks); assembly: hg19 787.0 KB
ENCFF734ILS.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 4.4 MB
ENCFF754BZY.fastq fastq (reads) 397.4 MB
ENCFF766DUS.bed bed (peaks); assembly: GRCh38 385.3 KB
ENCFF795GKY.fastq fastq (reads) 436.8 MB
ENCFF806XPW.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 4.6 MB
ENCFF868AMF.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 5.0 MB
ENCFF869FYO.bigBed bigBed (peaks); assembly: hg19 877.6 KB
ENCFF900IOH.bed bed (peaks); assembly: GRCh38 45.3 KB
ENCSR864XNB ENCSR · via encode_api

eCLIP control experiment on K562 against DDX52

Homo sapiens

8 data files
FileTypeSize
ENCFF012HBP.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 30.9 MB
ENCFF084BVN.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 30.5 MB
ENCFF190PTC.fastq fastq (reads) 730.4 MB
ENCFF301JHF.bam bam (alignments); assembly: hg19 688.9 MB
ENCFF490IQT.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 32.4 MB
ENCFF947YWJ.fastq fastq (reads) 794.0 MB
ENCFF953PIV.bam bam (alignments); assembly: GRCh38 697.5 MB
ENCFF956TRM.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 31.7 MB
ENCSR716DGM ENCSR · via encode_api

eCLIP control experiment on K562 against ZC3H8

Homo sapiens

8 data files
FileTypeSize
ENCFF279QTB.bam bam (alignments); assembly: hg19 87.3 MB
ENCFF471DDP.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 4.1 MB
ENCFF472ZEH.fastq fastq (reads) 507.4 MB
ENCFF482CXE.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 4.0 MB
ENCFF661LGO.bam bam (alignments); assembly: GRCh38 88.5 MB
ENCFF827URJ.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 3.8 MB
ENCFF828FUM.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 3.9 MB
ENCFF903ROZ.fastq fastq (reads) 502.2 MB
ENCSR991LWQ ENCSR · via encode_api

eCLIP control experiment on HepG2 against DDX52

Homo sapiens

8 data files
FileTypeSize
ENCFF065PGK.fastq fastq (reads) 596.9 MB
ENCFF177VMO.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 28.4 MB
ENCFF258COW.fastq fastq (reads) 676.5 MB
ENCFF487DLC.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 28.8 MB
ENCFF662MYI.bam bam (alignments); assembly: GRCh38 560.8 MB
ENCFF929ANB.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 29.6 MB
ENCFF943JVS.bam bam (alignments); assembly: hg19 549.6 MB
ENCFF955NVL.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 29.2 MB
ENCSR693JWP ENCSR · via encode_api

eCLIP experiment on HepG2 against EXOSC5

Homo sapiens

32 data files
FileTypeSize
ENCFF050JGG.fastq fastq (reads) 150.1 MB
ENCFF094VSP.bed bed (peaks); assembly: GRCh38 145.5 KB
ENCFF108FMS.bigBed bigBed (peaks); assembly: GRCh38 801.7 KB
ENCFF120LSF.bed bed (peaks); assembly: hg19 426.6 KB
ENCFF144JVB.bam bam (alignments); assembly: hg19 114.6 MB
ENCFF165IYB.fastq fastq (reads) 159.7 MB
ENCFF173ODI.fastq fastq (reads) 583.9 MB
ENCFF216VBT.bam bam (alignments); assembly: GRCh38 111.3 MB
ENCFF261AZU.fastq fastq (reads) 237.8 MB
ENCFF266WCQ.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 4.5 MB
ENCFF347UPZ.bigBed bigBed (peaks); assembly: GRCh38 370.6 KB
ENCFF353IMQ.bigBed bigBed (peaks); assembly: hg19 815.6 KB
ENCFF360EQG.bed bed (peaks); assembly: hg19 148.3 KB
ENCFF383ASP.fastq fastq (reads) 173.9 MB
ENCFF405ERW.bam bam (alignments); assembly: GRCh38 109.8 MB
ENCFF449CHK.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 4.4 MB
ENCFF458WEG.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 4.7 MB
ENCFF463OVP.bigBed bigBed (peaks); assembly: hg19 377.2 KB
ENCFF507EGU.fastq fastq (reads) 611.0 MB
ENCFF535JNJ.bam bam (alignments); assembly: hg19 116.7 MB
ENCFF578XQC.fastq fastq (reads) 179.0 MB
ENCFF603RJN.fastq fastq (reads) 129.8 MB
ENCFF622OZH.fastq fastq (reads) 122.0 MB
ENCFF719QKB.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 4.5 MB
ENCFF726PXN.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 4.6 MB
ENCFF735QHY.fastq fastq (reads) 244.2 MB
ENCFF799WXY.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 4.7 MB
ENCFF824WZJ.bed bed (peaks); assembly: GRCh38 419.3 KB
ENCFF862EKD.bed bed (peaks); assembly: GRCh38 16.3 KB
ENCFF873GTO.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 4.4 MB
ENCFF936FCK.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 4.6 MB
ENCFF937QJB.bed bed (peaks); assembly: hg19 16.4 KB
ENCSR958FKZ ENCSR · via encode_api

eCLIP experiment on K562 against PABPC4

Homo sapiens

26 data files
FileTypeSize
ENCFF006AVT.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 13.8 MB
ENCFF047TLS.bam bam (alignments); assembly: hg19 280.6 MB
ENCFF087JUK.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 14.2 MB
ENCFF192JKW.bigBed bigBed (peaks); assembly: GRCh38 1.2 MB
ENCFF363FQC.bigBed bigBed (peaks); assembly: hg19 2.8 MB
ENCFF440SQF.fastq fastq (reads) 346.2 MB
ENCFF446CWO.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 4.0 MB
ENCFF452MJL.bed bed (peaks); assembly: GRCh38 137.5 KB
ENCFF463ZSJ.bed bed (peaks); assembly: hg19 1.2 MB
ENCFF478YTR.fastq fastq (reads) 287.6 MB
ENCFF484RUL.fastq fastq (reads) 284.5 MB
ENCFF513VQU.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 4.1 MB
ENCFF551NSA.bam bam (alignments); assembly: GRCh38 265.3 MB
ENCFF559XNJ.bed bed (peaks); assembly: GRCh38 560.3 KB
ENCFF577BEF.bigBed bigBed (peaks); assembly: hg19 1.2 MB
ENCFF652YFU.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 13.6 MB
ENCFF662IWF.fastq fastq (reads) 341.8 MB
ENCFF692YDC.bam bam (alignments); assembly: GRCh38 60.7 MB
ENCFF707JVN.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 4.0 MB
ENCFF745TLR.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 3.9 MB
ENCFF772SPP.bed bed (peaks); assembly: hg19 565.4 KB
ENCFF778LEH.bigBed bigBed (peaks); assembly: GRCh38 2.8 MB
ENCFF787HQF.bed bed (peaks); assembly: GRCh38 1.2 MB
ENCFF953EUQ.bam bam (alignments); assembly: hg19 62.3 MB
ENCFF956PEQ.bed bed (peaks); assembly: hg19 139.6 KB
ENCFF990TDV.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 13.3 MB
ENCSR089BXO ENCSR · via encode_api

eCLIP experiment on K562 against ABCF1

Homo sapiens

26 data files
FileTypeSize
ENCFF010PPR.bigBed bigBed (peaks); assembly: GRCh38 518.2 KB
ENCFF070VGS.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 3.4 MB
ENCFF087VMD.fastq fastq (reads) 462.6 MB
ENCFF090YWS.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 2.6 MB
ENCFF203DRR.bam bam (alignments); assembly: hg19 68.6 MB
ENCFF212LWQ.fastq fastq (reads) 529.7 MB
ENCFF241MTQ.fastq fastq (reads) 450.7 MB
ENCFF300YSV.bed bed (peaks); assembly: GRCh38 236.5 KB
ENCFF307DZF.bigBed bigBed (peaks); assembly: hg19 433.7 KB
ENCFF332BZR.bed bed (peaks); assembly: hg19 247.4 KB
ENCFF361IIP.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 2.6 MB
ENCFF376NBT.bed bed (peaks); assembly: hg19 191.2 KB
ENCFF414SIN.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 3.2 MB
ENCFF424BDA.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 2.7 MB
ENCFF470BUE.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 2.5 MB
ENCFF489WZV.bed bed (peaks); assembly: GRCh38 183.6 KB
ENCFF504NOI.bigBed bigBed (peaks); assembly: GRCh38 421.2 KB
ENCFF521WPY.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 3.3 MB
ENCFF761ZBZ.bigBed bigBed (peaks); assembly: hg19 540.2 KB
ENCFF781LAN.fastq fastq (reads) 520.6 MB
ENCFF811EXB.bam bam (alignments); assembly: GRCh38 64.2 MB
ENCFF832LUT.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 3.5 MB
ENCFF906OCW.bam bam (alignments); assembly: hg19 48.1 MB
ENCFF929AVT.bed bed (peaks); assembly: hg19 1.7 KB
ENCFF941GJK.bed bed (peaks); assembly: GRCh38 1.5 KB
ENCFF983ABI.bam bam (alignments); assembly: GRCh38 45.8 MB
ENCSR685AUR ENCSR · via encode_api

eCLIP experiment on HepG2 against ZNF800

Homo sapiens

26 data files
FileTypeSize
ENCFF038BAZ.bed bed (peaks); assembly: hg19 961.4 KB
ENCFF038GCY.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 9.9 MB
ENCFF065FPQ.bigBed bigBed (peaks); assembly: GRCh38 2.6 MB
ENCFF160MKE.fastq fastq (reads) 573.2 MB
ENCFF195YQM.bigBed bigBed (peaks); assembly: hg19 1.6 MB
ENCFF234RUT.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 10.0 MB
ENCFF248VYV.bam bam (alignments); assembly: hg19 266.6 MB
ENCFF265GOS.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 13.1 MB
ENCFF265GVT.bam bam (alignments); assembly: GRCh38 261.6 MB
ENCFF277XGO.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 13.5 MB
ENCFF304CIP.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 13.3 MB
ENCFF343DKZ.fastq fastq (reads) 600.1 MB
ENCFF343TCO.bed bed (peaks); assembly: GRCh38 67.3 KB
ENCFF348GPW.fastq fastq (reads) 349.2 MB
ENCFF474PGR.bam bam (alignments); assembly: GRCh38 182.4 MB
ENCFF482ADJ.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 9.9 MB
ENCFF506YVW.bed bed (peaks); assembly: GRCh38 1.2 MB
ENCFF558IAO.bigBed bigBed (peaks); assembly: hg19 2.6 MB
ENCFF629DDP.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 13.6 MB
ENCFF643WBT.bam bam (alignments); assembly: hg19 185.7 MB
ENCFF660MWG.bed bed (peaks); assembly: hg19 1.2 MB
ENCFF712CBF.bed bed (peaks); assembly: GRCh38 962.5 KB
ENCFF793EJK.bed bed (peaks); assembly: hg19 66.1 KB
ENCFF862VYQ.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 9.8 MB
ENCFF959DLJ.fastq fastq (reads) 364.7 MB
ENCFF968QPW.bigBed bigBed (peaks); assembly: GRCh38 1.6 MB
ENCSR050BDZ ENCSR · via encode_api

eCLIP experiment on HepG2 against SDAD1

Homo sapiens

26 data files
FileTypeSize
ENCFF004ZSD.bam bam (alignments); assembly: hg19 97.7 MB
ENCFF060SCU.bigBed bigBed (peaks); assembly: GRCh38 1.0 MB
ENCFF075XTM.bed bed (peaks); assembly: hg19 21.7 KB
ENCFF079MBG.bam bam (alignments); assembly: GRCh38 97.1 MB
ENCFF283KXT.fastq fastq (reads) 540.9 MB
ENCFF325VKM.bed bed (peaks); assembly: hg19 595.1 KB
ENCFF332RVY.bigBed bigBed (peaks); assembly: GRCh38 1.1 MB
ENCFF336IRY.bed bed (peaks); assembly: GRCh38 592.9 KB
ENCFF346NQQ.bam bam (alignments); assembly: GRCh38 105.2 MB
ENCFF355EHK.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 5.2 MB
ENCFF361RSB.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 4.8 MB
ENCFF522VGK.fastq fastq (reads) 555.9 MB
ENCFF625AZU.bigBed bigBed (peaks); assembly: hg19 1.0 MB
ENCFF644PUX.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 4.7 MB
ENCFF697BPX.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 5.2 MB
ENCFF772OQA.fastq fastq (reads) 526.2 MB
ENCFF789KFH.bed bed (peaks); assembly: GRCh38 569.0 KB
ENCFF825UVD.bed bed (peaks); assembly: GRCh38 22.9 KB
ENCFF830EAE.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 5.0 MB
ENCFF861PYS.fastq fastq (reads) 537.9 MB
ENCFF875HEP.bam bam (alignments); assembly: hg19 106.0 MB
ENCFF882KLF.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 5.1 MB
ENCFF909ZQB.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 4.8 MB
ENCFF924ZKA.bigBed bigBed (peaks); assembly: hg19 1.1 MB
ENCFF943KDD.bed bed (peaks); assembly: hg19 571.6 KB
ENCFF988XDT.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 4.9 MB
ENCSR761AJD ENCSR · via encode_api

eCLIP control experiment on K562 against EIF3G

Homo sapiens

8 data files
FileTypeSize
ENCFF348UCA.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 4.7 MB
ENCFF384MIZ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 4.9 MB
ENCFF528GOF.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 5.0 MB
ENCFF539DGJ.fastq fastq (reads) 304.6 MB
ENCFF725BSE.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 4.7 MB
ENCFF743HXX.fastq fastq (reads) 284.3 MB
ENCFF750DBW.bam bam (alignments); assembly: hg19 123.9 MB
ENCFF759JDI.bam bam (alignments); assembly: GRCh38 124.8 MB
ENCSR903PRV ENCSR · via encode_api

eCLIP experiment on HepG2 against FTO

Homo sapiens

32 data files
FileTypeSize
ENCFF021RLL.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 3.5 MB
ENCFF034YUT.bed bed (peaks); assembly: hg19 12.6 KB
ENCFF040XCG.bam bam (alignments); assembly: GRCh38 77.0 MB
ENCFF063UTV.bam bam (alignments); assembly: hg19 170.8 MB
ENCFF078UEL.bigBed bigBed (peaks); assembly: hg19 1.2 MB
ENCFF096YYD.fastq fastq (reads) 252.5 MB
ENCFF099LFN.fastq fastq (reads) 107.7 MB
ENCFF134MAW.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 3.3 MB
ENCFF214SLR.fastq fastq (reads) 165.8 MB
ENCFF233ZOI.fastq fastq (reads) 162.7 MB
ENCFF335LFX.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 6.1 MB
ENCFF340BXW.bed bed (peaks); assembly: GRCh38 343.4 KB
ENCFF351ZDU.bed bed (peaks); assembly: GRCh38 12.5 KB
ENCFF385LTB.bam bam (alignments); assembly: GRCh38 165.7 MB
ENCFF428MRF.fastq fastq (reads) 128.7 MB
ENCFF442FCZ.bigBed bigBed (peaks); assembly: GRCh38 690.9 KB
ENCFF460IHR.fastq fastq (reads) 193.6 MB
ENCFF479PRH.bigBed bigBed (peaks); assembly: hg19 698.3 KB
ENCFF502BZV.bigBed bigBed (peaks); assembly: GRCh38 1.1 MB
ENCFF580QMH.fastq fastq (reads) 431.5 MB
ENCFF655JNU.bed bed (peaks); assembly: hg19 659.3 KB
ENCFF692ZBL.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 6.1 MB
ENCFF723DFF.bam bam (alignments); assembly: hg19 79.9 MB
ENCFF762QRZ.bed bed (peaks); assembly: GRCh38 648.2 KB
ENCFF790KRT.fastq fastq (reads) 329.6 MB
ENCFF817YOC.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 3.4 MB
ENCFF820YSI.fastq fastq (reads) 446.4 MB
ENCFF844HAH.fastq fastq (reads) 215.9 MB
ENCFF857UXY.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 6.2 MB
ENCFF925SGC.bed bed (peaks); assembly: hg19 349.0 KB
ENCFF934NAV.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 3.4 MB
ENCFF991DNF.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 5.9 MB
ENCSR387OVO ENCSR · via encode_api

eCLIP control experiment on HepG2 against UTP18

Homo sapiens

8 data files
FileTypeSize
ENCFF180MCF.bam bam (alignments); assembly: hg19 558.3 MB
ENCFF247XNY.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 25.2 MB
ENCFF444SAJ.bam bam (alignments); assembly: GRCh38 566.4 MB
ENCFF490XSK.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 25.6 MB
ENCFF645ZNB.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 25.8 MB
ENCFF656NYK.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 26.0 MB
ENCFF811ZGE.fastq fastq (reads) 666.0 MB
ENCFF812WIZ.fastq fastq (reads) 621.0 MB
ENCSR902XTJ ENCSR · via encode_api

eCLIP control experiment on HepG2 against AKAP1

Homo sapiens

8 data files
FileTypeSize
ENCFF008YNL.bam bam (alignments); assembly: hg19 288.2 MB
ENCFF085IJS.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 12.3 MB
ENCFF162VKU.bam bam (alignments); assembly: GRCh38 298.3 MB
ENCFF378CCG.fastq fastq (reads) 342.7 MB
ENCFF605MNI.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 13.0 MB
ENCFF849BXI.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 12.8 MB
ENCFF945MLB.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 12.5 MB
ENCFF956TUZ.fastq fastq (reads) 346.2 MB
ENCSR606BPV ENCSR · via encode_api

eCLIP experiment on K562 against AQR

Homo sapiens

26 data files
FileTypeSize
ENCFF053NWA.fastq fastq (reads) 692.7 MB
ENCFF098SCJ.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 16.9 MB
ENCFF134ZFX.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 11.7 MB
ENCFF166SON.bigBed bigBed (peaks); assembly: hg19 4.4 MB
ENCFF206SFN.bigBed bigBed (peaks); assembly: GRCh38 4.3 MB
ENCFF235BMH.bam bam (alignments); assembly: hg19 227.8 MB
ENCFF240IEE.bed bed (peaks); assembly: GRCh38 1.6 MB
ENCFF300ZIN.fastq fastq (reads) 451.3 MB
ENCFF325SFV.bed bed (peaks); assembly: hg19 2.3 MB
ENCFF333ERO.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 17.5 MB
ENCFF345VSH.bam bam (alignments); assembly: hg19 353.8 MB
ENCFF363DGM.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 11.2 MB
ENCFF374DAW.bam bam (alignments); assembly: GRCh38 330.3 MB
ENCFF400KYS.bed bed (peaks); assembly: hg19 529.1 KB
ENCFF436KLO.bam bam (alignments); assembly: GRCh38 218.1 MB
ENCFF441OJX.fastq fastq (reads) 730.4 MB
ENCFF461ZQQ.bigBed bigBed (peaks); assembly: hg19 3.2 MB
ENCFF465QKS.bed bed (peaks); assembly: hg19 1.6 MB
ENCFF466DMQ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 12.1 MB
ENCFF499TGS.bigBed bigBed (peaks); assembly: GRCh38 3.2 MB
ENCFF535SIF.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 16.1 MB
ENCFF544NMT.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 11.8 MB
ENCFF573NET.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 16.6 MB
ENCFF620JUD.bed bed (peaks); assembly: GRCh38 2.2 MB
ENCFF761MCX.fastq fastq (reads) 425.3 MB
ENCFF949QGM.bed bed (peaks); assembly: GRCh38 505.0 KB
ENCSR404ABA ENCSR · via encode_api

eCLIP control experiment on K562 against WDR43

Homo sapiens

8 data files
FileTypeSize
ENCFF225CKH.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 25.8 MB
ENCFF352VBP.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 26.3 MB
ENCFF407AXQ.fastq fastq (reads) 520.4 MB
ENCFF532CUG.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 25.4 MB
ENCFF587TIW.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 24.7 MB
ENCFF701CEW.bam bam (alignments); assembly: hg19 501.1 MB
ENCFF855XKN.fastq fastq (reads) 565.4 MB
ENCFF873AEV.bam bam (alignments); assembly: GRCh38 515.8 MB
ENCSR349CMI ENCSR · via encode_api

eCLIP experiment on K562 against WDR43

Homo sapiens

26 data files
FileTypeSize
ENCFF048QZQ.bigBed bigBed (peaks); assembly: GRCh38 1.1 MB
ENCFF079JRB.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 5.8 MB
ENCFF083HOA.fastq fastq (reads) 581.9 MB
ENCFF177SNO.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 3.6 MB
ENCFF188RTW.fastq fastq (reads) 568.6 MB
ENCFF213FHW.bed bed (peaks); assembly: GRCh38 387.6 KB
ENCFF238XRJ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 3.8 MB
ENCFF244JER.bed bed (peaks); assembly: GRCh38 3.7 KB
ENCFF275AYL.bigBed bigBed (peaks); assembly: hg19 1.1 MB
ENCFF309ZSS.bigBed bigBed (peaks); assembly: hg19 805.7 KB
ENCFF344QPA.bigBed bigBed (peaks); assembly: GRCh38 798.7 KB
ENCFF358QSY.bed bed (peaks); assembly: hg19 3.8 KB
ENCFF380CNM.bam bam (alignments); assembly: hg19 63.4 MB
ENCFF425HAU.bed bed (peaks); assembly: hg19 392.5 KB
ENCFF445DOZ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 6.0 MB
ENCFF463JRJ.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 3.6 MB
ENCFF509FAF.bed bed (peaks); assembly: hg19 615.0 KB
ENCFF522XKE.fastq fastq (reads) 517.8 MB
ENCFF545IBP.bed bed (peaks); assembly: GRCh38 608.5 KB
ENCFF580XQC.bam bam (alignments); assembly: GRCh38 62.1 MB
ENCFF729AVB.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 3.7 MB
ENCFF748FDO.bam bam (alignments); assembly: hg19 117.9 MB
ENCFF810LWT.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 6.0 MB
ENCFF899IIA.fastq fastq (reads) 536.0 MB
ENCFF912BRE.bam bam (alignments); assembly: GRCh38 115.2 MB
ENCFF998NDS.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 5.7 MB
ENCSR343MKJ ENCSR · via encode_api

eCLIP control experiment on HepG2 against FTO

Homo sapiens

8 data files
FileTypeSize
ENCFF028JUM.fastq fastq (reads) 360.4 MB
ENCFF062MJR.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 10.5 MB
ENCFF104YFG.fastq fastq (reads) 378.2 MB
ENCFF214XZG.bam bam (alignments); assembly: GRCh38 243.8 MB
ENCFF310NFE.bam bam (alignments); assembly: hg19 238.3 MB
ENCFF446BUY.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 10.3 MB
ENCFF480JOW.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 10.6 MB
ENCFF755QRF.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 10.2 MB
ENCSR042RCU ENCSR · via encode_api

eCLIP control experiment on HepG2 against UPF1

Homo sapiens

8 data files
FileTypeSize
ENCFF159XFE.fastq fastq (reads) 275.2 MB
ENCFF257MNA.fastq fastq (reads) 263.5 MB
ENCFF457JNW.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 10.9 MB
ENCFF559RCW.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 11.0 MB
ENCFF570JWM.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 10.8 MB
ENCFF572WFZ.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 11.2 MB
ENCFF639BOG.bam bam (alignments); assembly: hg19 214.6 MB
ENCFF974NJE.bam bam (alignments); assembly: GRCh38 220.3 MB
ENCSR103HDM ENCSR · via encode_api

eCLIP control experiment on K562 against PHF6

Homo sapiens

8 data files
FileTypeSize
ENCFF078XOD.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 20.8 MB
ENCFF156XOE.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 21.6 MB
ENCFF248EUN.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 20.6 MB
ENCFF278RGL.bam bam (alignments); assembly: GRCh38 454.9 MB
ENCFF427GOR.bam bam (alignments); assembly: hg19 448.8 MB
ENCFF432QNK.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 21.3 MB
ENCFF804TGO.fastq fastq (reads) 632.5 MB
ENCFF928TNJ.fastq fastq (reads) 696.6 MB
ENCSR423QXH ENCSR · via encode_api

eCLIP control experiment on HepG2 against KHSRP

Homo sapiens

8 data files
FileTypeSize
ENCFF257IPS.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 26.2 MB
ENCFF624GDF.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 26.7 MB
ENCFF638CND.fastq fastq (reads) 769.9 MB
ENCFF665FHS.fastq fastq (reads) 718.1 MB
ENCFF696LDT.bam bam (alignments); assembly: GRCh38 694.5 MB
ENCFF792HHG.bam bam (alignments); assembly: hg19 679.8 MB
ENCFF884SHN.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 26.0 MB
ENCFF904AQP.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 26.5 MB
ENCSR615ZYL ENCSR · via encode_api

eCLIP control experiment on K562 against ZNF800

Homo sapiens

8 data files
FileTypeSize
ENCFF034ROO.fastq fastq (reads) 821.9 MB
ENCFF206XKH.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 13.1 MB
ENCFF208BCL.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 13.7 MB
ENCFF369AIZ.fastq fastq (reads) 815.5 MB
ENCFF437VSN.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 13.4 MB
ENCFF609LFM.bam bam (alignments); assembly: GRCh38 342.5 MB
ENCFF707KQZ.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 12.8 MB
ENCFF762HKJ.bam bam (alignments); assembly: hg19 332.5 MB
ENCSR701QEP ENCSR · via encode_api

eCLIP control experiment on HepG2 against STAU2

Homo sapiens

8 data files
FileTypeSize
ENCFF053PON.fastq fastq (reads) 503.6 MB
ENCFF118WBK.bam bam (alignments); assembly: GRCh38 448.0 MB
ENCFF278UYQ.fastq fastq (reads) 527.6 MB
ENCFF552YTV.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 20.6 MB
ENCFF595GJE.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 20.9 MB
ENCFF675UWE.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 21.2 MB
ENCFF737HQI.bam bam (alignments); assembly: hg19 438.4 MB
ENCFF950KPW.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 21.6 MB
ENCSR322KLN ENCSR · via encode_api

eCLIP control experiment on K562 against PCBP1

Homo sapiens

8 data files
FileTypeSize
ENCFF300SEB.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 16.3 MB
ENCFF419JXA.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 15.5 MB
ENCFF483ILV.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 15.9 MB
ENCFF524GUO.bam bam (alignments); assembly: hg19 353.1 MB
ENCFF540QQX.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 16.6 MB
ENCFF647AFT.bam bam (alignments); assembly: GRCh38 359.3 MB
ENCFF747VRT.fastq fastq (reads) 692.0 MB
ENCFF998SFM.fastq fastq (reads) 741.0 MB
ENCSR973HOJ ENCSR · via encode_api

eCLIP experiment on HepG2 against FXR2

Homo sapiens

26 data files
FileTypeSize
ENCFF004VKR.bigBed bigBed (peaks); assembly: hg19 2.1 MB
ENCFF032TZM.bam bam (alignments); assembly: hg19 241.1 MB
ENCFF034XGK.fastq fastq (reads) 554.0 MB
ENCFF074OYO.fastq fastq (reads) 479.6 MB
ENCFF112MVG.bed bed (peaks); assembly: GRCh38 84.1 KB
ENCFF149CJJ.bed bed (peaks); assembly: hg19 85.5 KB
ENCFF157JBC.bam bam (alignments); assembly: GRCh38 226.9 MB
ENCFF159MBO.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 10.7 MB
ENCFF246SBA.bed bed (peaks); assembly: hg19 863.8 KB
ENCFF272DGX.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 9.4 MB
ENCFF300OPL.fastq fastq (reads) 563.4 MB
ENCFF385GCC.bam bam (alignments); assembly: hg19 187.9 MB
ENCFF410VWB.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 9.7 MB
ENCFF445MKT.bigBed bigBed (peaks); assembly: GRCh38 1.5 MB
ENCFF450CWZ.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 11.1 MB
ENCFF483HFI.bigBed bigBed (peaks); assembly: GRCh38 2.1 MB
ENCFF499FPK.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 9.6 MB
ENCFF500VOG.bam bam (alignments); assembly: GRCh38 180.9 MB
ENCFF528ZUW.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 10.7 MB
ENCFF638WRZ.bed bed (peaks); assembly: GRCh38 849.1 KB
ENCFF702QGF.bed bed (peaks); assembly: GRCh38 1022.7 KB
ENCFF733GMZ.fastq fastq (reads) 485.9 MB
ENCFF758DRK.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 9.2 MB
ENCFF815YGA.bed bed (peaks); assembly: hg19 1.0 MB
ENCFF934FRF.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 11.2 MB
ENCFF939JDG.bigBed bigBed (peaks); assembly: hg19 1.5 MB
ENCSR308YNT ENCSR · via encode_api

eCLIP experiment on K562 against PUM1

Homo sapiens

26 data files
FileTypeSize
ENCFF004UZD.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 9.4 MB
ENCFF019LLG.fastq fastq (reads) 600.2 MB
ENCFF022IWU.bed bed (peaks); assembly: GRCh38 954.3 KB
ENCFF046QBX.fastq fastq (reads) 460.7 MB
ENCFF060XYT.bed bed (peaks); assembly: hg19 959.5 KB
ENCFF064COB.bam bam (alignments); assembly: GRCh38 172.5 MB
ENCFF094MQV.bed bed (peaks); assembly: GRCh38 61.0 KB
ENCFF116YKN.fastq fastq (reads) 529.9 MB
ENCFF123VNX.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 9.7 MB
ENCFF143ACO.bigBed bigBed (peaks); assembly: GRCh38 1.9 MB
ENCFF183BXI.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 10.1 MB
ENCFF311WSE.bigBed bigBed (peaks); assembly: hg19 1.9 MB
ENCFF322IKX.bigBed bigBed (peaks); assembly: hg19 2.0 MB
ENCFF353WDF.bam bam (alignments); assembly: hg19 183.0 MB
ENCFF353ZJC.fastq fastq (reads) 516.1 MB
ENCFF369TUQ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 9.7 MB
ENCFF425EDT.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 9.3 MB
ENCFF463VDB.bam bam (alignments); assembly: hg19 188.0 MB
ENCFF504KGD.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 9.3 MB
ENCFF583QFB.bam bam (alignments); assembly: GRCh38 181.4 MB
ENCFF620UYD.bed bed (peaks); assembly: GRCh38 919.0 KB
ENCFF802ZLH.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 9.9 MB
ENCFF835JOX.bigBed bigBed (peaks); assembly: GRCh38 1.9 MB
ENCFF868WSG.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 9.0 MB
ENCFF933SBL.bed bed (peaks); assembly: hg19 934.8 KB
ENCFF969AOQ.bed bed (peaks); assembly: hg19 60.5 KB
ENCSR266XXD ENCSR · via encode_api

eCLIP control experiment on K562 against DDX21

Homo sapiens

8 data files
FileTypeSize
ENCFF116DWQ.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 15.3 MB
ENCFF212EDY.bam bam (alignments); assembly: GRCh38 314.6 MB
ENCFF394GDV.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 15.1 MB
ENCFF421KCB.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 15.8 MB
ENCFF445UCY.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 15.6 MB
ENCFF787VFD.bam bam (alignments); assembly: hg19 311.9 MB
ENCFF790GSX.fastq fastq (reads) 426.5 MB
ENCFF953OQX.fastq fastq (reads) 418.3 MB
ENCSR033FWT ENCSR · via encode_api

eCLIP control experiment on K562 against WDR3

Homo sapiens

8 data files
FileTypeSize
ENCFF163KJT.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 24.6 MB
ENCFF278YVT.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 24.1 MB
ENCFF377SJO.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 23.3 MB
ENCFF496JTD.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 23.8 MB
ENCFF505OPV.fastq fastq (reads) 582.1 MB
ENCFF639TBT.fastq fastq (reads) 580.9 MB
ENCFF789QMT.bam bam (alignments); assembly: hg19 544.6 MB
ENCFF978VBW.bam bam (alignments); assembly: GRCh38 557.7 MB
ENCSR389ISM ENCSR · via encode_api

eCLIP control experiment on K562 against FUS

Homo sapiens

8 data files
FileTypeSize
ENCFF084ZXT.fastq fastq (reads) 716.3 MB
ENCFF117JMQ.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 14.9 MB
ENCFF128HQK.fastq fastq (reads) 690.0 MB
ENCFF233ZZR.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 15.3 MB
ENCFF447LJU.bam bam (alignments); assembly: GRCh38 361.8 MB
ENCFF481NLU.bam bam (alignments); assembly: hg19 355.4 MB
ENCFF528PWJ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 15.0 MB
ENCFF626BAU.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 14.6 MB
ENCSR361OCV ENCSR · via encode_api

eCLIP experiment on HepG2 against NIP7

Homo sapiens

26 data files
FileTypeSize
ENCFF033MGP.bed bed (peaks); assembly: GRCh38 7.4 KB
ENCFF048BEP.bam bam (alignments); assembly: hg19 51.8 MB
ENCFF060MIC.bigBed bigBed (peaks); assembly: GRCh38 489.5 KB
ENCFF068VHN.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 2.3 MB
ENCFF077RVD.bed bed (peaks); assembly: hg19 151.6 KB
ENCFF105OHO.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 2.1 MB
ENCFF122OZU.bigBed bigBed (peaks); assembly: hg19 364.1 KB
ENCFF125GZY.fastq fastq (reads) 658.7 MB
ENCFF134AMO.fastq fastq (reads) 715.0 MB
ENCFF157MHL.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 2.4 MB
ENCFF169ABN.bam bam (alignments); assembly: GRCh38 49.2 MB
ENCFF204THM.bed bed (peaks); assembly: GRCh38 186.3 KB
ENCFF216MCK.bam bam (alignments); assembly: GRCh38 43.8 MB
ENCFF251ZRM.bam bam (alignments); assembly: hg19 45.8 MB
ENCFF260EIZ.fastq fastq (reads) 587.2 MB
ENCFF318WQO.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 2.4 MB
ENCFF427MET.fastq fastq (reads) 640.9 MB
ENCFF474VRK.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 2.2 MB
ENCFF501GXB.bed bed (peaks); assembly: GRCh38 146.7 KB
ENCFF527MFS.bed bed (peaks); assembly: hg19 191.2 KB
ENCFF532HBV.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 2.4 MB
ENCFF620URI.bigBed bigBed (peaks); assembly: GRCh38 353.9 KB
ENCFF649OFM.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 2.2 MB
ENCFF677VIX.bigBed bigBed (peaks); assembly: hg19 499.9 KB
ENCFF779WAQ.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 2.2 MB
ENCFF955VYD.bed bed (peaks); assembly: hg19 7.4 KB
ENCSR544UON ENCSR · via encode_api

eCLIP control experiment on K562 against AKAP1

Homo sapiens

8 data files
FileTypeSize
ENCFF091PQO.bam bam (alignments); assembly: GRCh38 400.9 MB
ENCFF208EFX.fastq fastq (reads) 684.5 MB
ENCFF296ZFQ.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 17.0 MB
ENCFF317MHT.fastq fastq (reads) 717.4 MB
ENCFF447WQT.bam bam (alignments); assembly: hg19 388.3 MB
ENCFF697SEB.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 17.5 MB
ENCFF743ICQ.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 17.7 MB
ENCFF903BUG.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 18.2 MB
ENCSR592ESN ENCSR · via encode_api

eCLIP control experiment on HepG2 against FXR2

Homo sapiens

8 data files
FileTypeSize
ENCFF052EKD.fastq fastq (reads) 711.3 MB
ENCFF160EHF.fastq fastq (reads) 703.5 MB
ENCFF220WUB.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 16.0 MB
ENCFF314ZCB.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 16.0 MB
ENCFF716YEB.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 15.7 MB
ENCFF867HUI.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 15.7 MB
ENCFF936GTY.bam bam (alignments); assembly: hg19 385.7 MB
ENCFF985TJF.bam bam (alignments); assembly: GRCh38 393.1 MB
ENCSR739VVT ENCSR · via encode_api

eCLIP experiment on K562 against APOBEC3C

Homo sapiens

32 data files
FileTypeSize
ENCFF023SPX.fastq fastq (reads) 115.5 MB
ENCFF034NKK.bed bed (peaks); assembly: GRCh38 762.4 KB
ENCFF039MJO.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 12.1 MB
ENCFF082VYL.fastq fastq (reads) 140.7 MB
ENCFF239THR.bigBed bigBed (peaks); assembly: hg19 1.4 MB
ENCFF260KKZ.fastq fastq (reads) 211.7 MB
ENCFF273IBF.bed bed (peaks); assembly: GRCh38 625.8 KB
ENCFF284TAX.bam bam (alignments); assembly: GRCh38 194.2 MB
ENCFF285GQG.fastq fastq (reads) 106.2 MB
ENCFF315EQH.fastq fastq (reads) 352.4 MB
ENCFF315VJK.fastq fastq (reads) 314.2 MB
ENCFF319VBB.bed bed (peaks); assembly: hg19 770.7 KB
ENCFF346VFW.bam bam (alignments); assembly: hg19 105.3 MB
ENCFF379YZG.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 11.7 MB
ENCFF392MTE.fastq fastq (reads) 129.4 MB
ENCFF398XYR.bam bam (alignments); assembly: hg19 199.6 MB
ENCFF430LRB.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 5.7 MB
ENCFF436DAF.bigBed bigBed (peaks); assembly: hg19 1.2 MB
ENCFF472CCL.bed bed (peaks); assembly: GRCh38 23.8 KB
ENCFF499WCD.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 5.8 MB
ENCFF519AJS.bed bed (peaks); assembly: hg19 632.3 KB
ENCFF571IFM.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 5.5 MB
ENCFF655HJD.fastq fastq (reads) 243.7 MB
ENCFF668IXD.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 5.6 MB
ENCFF709WDL.bigBed bigBed (peaks); assembly: GRCh38 1.3 MB
ENCFF713YLQ.fastq fastq (reads) 193.1 MB
ENCFF736YDH.bed bed (peaks); assembly: hg19 23.2 KB
ENCFF774VNR.fastq fastq (reads) 223.9 MB
ENCFF779MXW.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 11.9 MB
ENCFF785OQN.bigBed bigBed (peaks); assembly: GRCh38 1.1 MB
ENCFF921RKR.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 11.5 MB
ENCFF943EZJ.bam bam (alignments); assembly: GRCh38 103.2 MB
ENCSR464OSH ENCSR · via encode_api

eCLIP experiment on HepG2 against FUS

Homo sapiens

26 data files
FileTypeSize
ENCFF014VCG.bam bam (alignments); assembly: hg19 784.7 MB
ENCFF053HVX.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 34.9 MB
ENCFF074NHF.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 34.3 MB
ENCFF106CGP.bed bed (peaks); assembly: hg19 2.2 MB
ENCFF144QMK.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 30.0 MB
ENCFF161SRN.fastq fastq (reads) 649.1 MB
ENCFF163PLH.bed bed (peaks); assembly: hg19 2.5 MB
ENCFF177YJA.bam bam (alignments); assembly: GRCh38 763.7 MB
ENCFF181DXK.bam bam (alignments); assembly: GRCh38 596.9 MB
ENCFF213CRG.bigBed bigBed (peaks); assembly: GRCh38 4.8 MB
ENCFF264FPV.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 27.2 MB
ENCFF311LXM.bam bam (alignments); assembly: hg19 633.6 MB
ENCFF331AAL.fastq fastq (reads) 545.0 MB
ENCFF336WDV.bed bed (peaks); assembly: hg19 16.7 KB
ENCFF400CXS.fastq fastq (reads) 564.0 MB
ENCFF532APU.bigBed bigBed (peaks); assembly: hg19 4.8 MB
ENCFF631GSU.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 35.5 MB
ENCFF650QXI.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 33.8 MB
ENCFF685MZA.bed bed (peaks); assembly: GRCh38 2.2 MB
ENCFF734UIE.bigBed bigBed (peaks); assembly: GRCh38 4.3 MB
ENCFF785SER.bigBed bigBed (peaks); assembly: hg19 4.4 MB
ENCFF818XWM.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 28.3 MB
ENCFF821CAW.fastq fastq (reads) 631.5 MB
ENCFF919FGD.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 28.5 MB
ENCFF951IBI.bed bed (peaks); assembly: GRCh38 2.5 MB
ENCFF972DFZ.bed bed (peaks); assembly: GRCh38 18.4 KB
ENCSR539BEV ENCSR · via encode_api

eCLIP experiment on HepG2 against UPF1

Homo sapiens

26 data files
FileTypeSize
ENCFF022DHH.fastq fastq (reads) 295.8 MB
ENCFF050BHJ.bigBed bigBed (peaks); assembly: hg19 1.4 MB
ENCFF072CTB.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 12.1 MB
ENCFF072RII.bigBed bigBed (peaks); assembly: GRCh38 1.1 MB
ENCFF101ODP.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 8.8 MB
ENCFF153YEG.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 8.9 MB
ENCFF168ORJ.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 8.5 MB
ENCFF218EGF.bigBed bigBed (peaks); assembly: GRCh38 1.4 MB
ENCFF242FDW.bed bed (peaks); assembly: hg19 222.8 KB
ENCFF315BLR.bam bam (alignments); assembly: hg19 186.8 MB
ENCFF368XBY.bed bed (peaks); assembly: GRCh38 576.8 KB
ENCFF400GTE.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 8.4 MB
ENCFF429YRX.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 11.3 MB
ENCFF483STL.bed bed (peaks); assembly: hg19 712.5 KB
ENCFF517FAK.bigBed bigBed (peaks); assembly: hg19 1.2 MB
ENCFF528BUU.fastq fastq (reads) 312.7 MB
ENCFF687EQE.bed bed (peaks); assembly: GRCh38 225.7 KB
ENCFF699EEF.bam bam (alignments); assembly: GRCh38 180.7 MB
ENCFF763ZLD.bed bed (peaks); assembly: GRCh38 722.4 KB
ENCFF787DWG.bam bam (alignments); assembly: hg19 253.9 MB
ENCFF811KHK.bam bam (alignments); assembly: GRCh38 246.1 MB
ENCFF848JHB.bed bed (peaks); assembly: hg19 578.3 KB
ENCFF881UQQ.fastq fastq (reads) 287.2 MB
ENCFF943HIX.fastq fastq (reads) 316.7 MB
ENCFF992OTW.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 11.5 MB
ENCFF998KED.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 11.8 MB
ENCSR906ZJF ENCSR · via encode_api

eCLIP experiment on K562 against SDAD1

Homo sapiens

26 data files
FileTypeSize
ENCFF012LSN.fastq fastq (reads) 450.2 MB
ENCFF019OYM.fastq fastq (reads) 506.6 MB
ENCFF062NZX.bigBed bigBed (peaks); assembly: hg19 342.8 KB
ENCFF080UZX.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 1.7 MB
ENCFF113QBT.bam bam (alignments); assembly: GRCh38 32.0 MB
ENCFF114EUH.bed bed (peaks); assembly: GRCh38 1.8 KB
ENCFF150UWL.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 3.1 MB
ENCFF169ZAH.bed bed (peaks); assembly: GRCh38 231.7 KB
ENCFF241KPE.bed bed (peaks); assembly: hg19 1.4 KB
ENCFF262TRZ.bam bam (alignments); assembly: hg19 61.3 MB
ENCFF300LDQ.bigBed bigBed (peaks); assembly: GRCh38 328.5 KB
ENCFF310NJO.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 1.8 MB
ENCFF475FOJ.bed bed (peaks); assembly: hg19 240.0 KB
ENCFF478LDY.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 3.3 MB
ENCFF488IGQ.bigBed bigBed (peaks); assembly: hg19 524.7 KB
ENCFF525ZWJ.bigBed bigBed (peaks); assembly: GRCh38 510.0 KB
ENCFF642DGM.bed bed (peaks); assembly: hg19 124.2 KB
ENCFF646DAJ.fastq fastq (reads) 491.4 MB
ENCFF698ZRC.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 3.0 MB
ENCFF702ZSG.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 3.2 MB
ENCFF856AGT.fastq fastq (reads) 544.0 MB
ENCFF913FPP.bed bed (peaks); assembly: GRCh38 117.1 KB
ENCFF946AMH.bam bam (alignments); assembly: GRCh38 59.4 MB
ENCFF964YXC.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 1.8 MB
ENCFF976VLP.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 1.9 MB
ENCFF998XEU.bam bam (alignments); assembly: hg19 33.4 MB
ENCSR367ACZ ENCSR · via encode_api

eCLIP control experiment on HepG2 against PRPF4

Homo sapiens

8 data files
FileTypeSize
ENCFF155TML.bam bam (alignments); assembly: GRCh38 341.6 MB
ENCFF300FOD.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 14.8 MB
ENCFF343WLN.fastq fastq (reads) 415.0 MB
ENCFF560IMA.fastq fastq (reads) 412.5 MB
ENCFF603CHX.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 15.3 MB
ENCFF698WXG.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 15.1 MB
ENCFF827HXV.bam bam (alignments); assembly: hg19 334.0 MB
ENCFF975WHN.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 14.9 MB
ENCSR857ORY ENCSR · via encode_api

eCLIP control experiment on K562 against ABCF1

Homo sapiens

8 data files
FileTypeSize
ENCFF022GWO.fastq fastq (reads) 619.4 MB
ENCFF039OUK.fastq fastq (reads) 632.7 MB
ENCFF064GXQ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 12.7 MB
ENCFF328HLS.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 13.0 MB
ENCFF499MQV.bam bam (alignments); assembly: GRCh38 257.5 MB
ENCFF568PQW.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 12.6 MB
ENCFF817YCI.bam bam (alignments); assembly: hg19 252.4 MB
ENCFF828ZNL.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 12.2 MB
ENCSR533BNK ENCSR · via encode_api

eCLIP control experiment on K562 against CPEB4

Homo sapiens

8 data files
FileTypeSize
ENCFF036BER.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 15.5 MB
ENCFF253LEQ.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 16.1 MB
ENCFF287VBF.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 16.6 MB
ENCFF296WZS.fastq fastq (reads) 775.3 MB
ENCFF732JDY.fastq fastq (reads) 727.9 MB
ENCFF777AFV.bam bam (alignments); assembly: hg19 364.5 MB
ENCFF790WEA.bam bam (alignments); assembly: GRCh38 377.0 MB
ENCFF804USB.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 16.0 MB
ENCSR181NRW ENCSR · via encode_api

eCLIP experiment on K562 against ZC3H8

Homo sapiens

26 data files
FileTypeSize
ENCFF011ICS.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 4.4 MB
ENCFF172VCZ.fastq fastq (reads) 674.7 MB
ENCFF207UUG.bed bed (peaks); assembly: hg19 6.8 KB
ENCFF222OHT.fastq fastq (reads) 432.8 MB
ENCFF276YFH.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 4.6 MB
ENCFF302NJT.bam bam (alignments); assembly: hg19 92.5 MB
ENCFF343YDJ.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 2.6 MB
ENCFF361EVD.fastq fastq (reads) 614.6 MB
ENCFF382URH.bed bed (peaks); assembly: GRCh38 6.8 KB
ENCFF397QWI.bigBed bigBed (peaks); assembly: GRCh38 767.2 KB
ENCFF409GUM.bam bam (alignments); assembly: GRCh38 45.0 MB
ENCFF411LMS.fastq fastq (reads) 392.0 MB
ENCFF435DGO.bigBed bigBed (peaks); assembly: hg19 597.1 KB
ENCFF515ATI.bed bed (peaks); assembly: hg19 339.1 KB
ENCFF607HRG.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 4.3 MB
ENCFF627NRS.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 2.7 MB
ENCFF637KIG.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 2.9 MB
ENCFF670VYB.bed bed (peaks); assembly: GRCh38 323.3 KB
ENCFF706LXQ.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 2.7 MB
ENCFF711ATW.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 4.5 MB
ENCFF717DIZ.bam bam (alignments); assembly: hg19 47.7 MB
ENCFF725VLW.bed bed (peaks); assembly: GRCh38 476.9 KB
ENCFF810NKS.bigBed bigBed (peaks); assembly: GRCh38 578.3 KB
ENCFF892SVF.bam bam (alignments); assembly: GRCh38 89.2 MB
ENCFF966TMA.bigBed bigBed (peaks); assembly: hg19 788.1 KB
ENCFF990BSZ.bed bed (peaks); assembly: hg19 495.2 KB
ENCSR046JHH ENCSR · via encode_api

eCLIP experiment on K562 against CPEB4

Homo sapiens

26 data files
FileTypeSize
ENCFF038VZO.bam bam (alignments); assembly: GRCh38 74.5 MB
ENCFF075LPL.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 4.1 MB
ENCFF104VMP.bed bed (peaks); assembly: hg19 491.9 KB
ENCFF153CMF.bed bed (peaks); assembly: hg19 5.2 KB
ENCFF161SFX.bam bam (alignments); assembly: hg19 77.6 MB
ENCFF165CFI.bam bam (alignments); assembly: hg19 92.2 MB
ENCFF180DLO.bigBed bigBed (peaks); assembly: hg19 888.3 KB
ENCFF216ENA.bam bam (alignments); assembly: GRCh38 86.3 MB
ENCFF231USX.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 4.4 MB
ENCFF370BLG.bed bed (peaks); assembly: GRCh38 476.2 KB
ENCFF379DBY.bed bed (peaks); assembly: hg19 430.2 KB
ENCFF402FOP.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 4.0 MB
ENCFF423MRZ.fastq fastq (reads) 361.7 MB
ENCFF445MTV.fastq fastq (reads) 312.2 MB
ENCFF462NKY.bigBed bigBed (peaks); assembly: GRCh38 798.1 KB
ENCFF508FXQ.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 4.2 MB
ENCFF655ROH.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 4.4 MB
ENCFF665BGJ.bed bed (peaks); assembly: GRCh38 4.7 KB
ENCFF684MMZ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 4.6 MB
ENCFF718OFC.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 3.8 MB
ENCFF764VBB.fastq fastq (reads) 472.7 MB
ENCFF854FIH.fastq fastq (reads) 557.6 MB
ENCFF874CIU.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 3.9 MB
ENCFF903OOM.bigBed bigBed (peaks); assembly: GRCh38 843.2 KB
ENCFF976VFC.bed bed (peaks); assembly: GRCh38 405.5 KB
ENCFF998YKL.bigBed bigBed (peaks); assembly: hg19 819.2 KB
ENCSR700UGT ENCSR · via encode_api

eCLIP control experiment on HepG2 against YBX3

Homo sapiens

8 data files
FileTypeSize
ENCFF101VSR.bam bam (alignments); assembly: GRCh38 283.1 MB
ENCFF111XXV.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 11.6 MB
ENCFF178VIK.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 11.2 MB
ENCFF224UCB.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 11.5 MB
ENCFF520IMA.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 11.4 MB
ENCFF576RGE.bam bam (alignments); assembly: hg19 279.0 MB
ENCFF706KON.fastq fastq (reads) 756.3 MB
ENCFF798TFX.fastq fastq (reads) 817.8 MB
ENCSR192TPA ENCSR · via encode_api

eCLIP control experiment on K562 against PABPC4

Homo sapiens

8 data files
FileTypeSize
ENCFF011DYO.bam bam (alignments); assembly: GRCh38 577.4 MB
ENCFF120HRN.bam bam (alignments); assembly: hg19 567.8 MB
ENCFF371WFK.fastq fastq (reads) 622.8 MB
ENCFF576YDY.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 25.1 MB
ENCFF611LDZ.fastq fastq (reads) 693.8 MB
ENCFF776NCN.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 25.9 MB
ENCFF861XJK.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 25.5 MB
ENCFF976HQN.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 26.3 MB
ENCSR721HPX ENCSR · via encode_api

eCLIP experiment on HepG2 against G3BP1

Homo sapiens

26 data files
FileTypeSize
ENCFF015CYW.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 12.0 MB
ENCFF042TNT.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 14.0 MB
ENCFF052VSF.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 14.3 MB
ENCFF065SWB.fastq fastq (reads) 729.4 MB
ENCFF074GKB.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 12.1 MB
ENCFF165JYX.bed bed (peaks); assembly: hg19 1.3 MB
ENCFF180AUP.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 13.6 MB
ENCFF205KCK.bed bed (peaks); assembly: GRCh38 1.3 MB
ENCFF234EDT.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 13.9 MB
ENCFF288LEG.bam bam (alignments); assembly: GRCh38 292.3 MB
ENCFF340DMM.bam bam (alignments); assembly: hg19 304.4 MB
ENCFF342WGS.fastq fastq (reads) 558.1 MB
ENCFF395MJO.bam bam (alignments); assembly: GRCh38 235.9 MB
ENCFF482DGA.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 12.4 MB
ENCFF486NTL.fastq fastq (reads) 640.4 MB
ENCFF506GKX.bed bed (peaks); assembly: GRCh38 1.2 MB
ENCFF557CZU.fastq fastq (reads) 500.3 MB
ENCFF564AEK.bam bam (alignments); assembly: hg19 249.0 MB
ENCFF575JDL.bigBed bigBed (peaks); assembly: hg19 2.4 MB
ENCFF705PQT.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 12.5 MB
ENCFF751SPV.bigBed bigBed (peaks); assembly: GRCh38 2.4 MB
ENCFF792NCE.bigBed bigBed (peaks); assembly: hg19 2.6 MB
ENCFF899HHP.bed bed (peaks); assembly: GRCh38 143.6 KB
ENCFF900DXH.bigBed bigBed (peaks); assembly: GRCh38 2.6 MB
ENCFF934JFZ.bed bed (peaks); assembly: hg19 1.2 MB
ENCFF963CVD.bed bed (peaks); assembly: hg19 145.2 KB
ENCSR177QQY ENCSR · via encode_api

eCLIP experiment on K562 against AKAP1

Homo sapiens

26 data files
FileTypeSize
ENCFF010IOJ.bed bed (peaks); assembly: GRCh38 766.9 KB
ENCFF013IBR.fastq fastq (reads) 387.8 MB
ENCFF016YOC.bam bam (alignments); assembly: GRCh38 94.4 MB
ENCFF033EFV.bed bed (peaks); assembly: GRCh38 33.8 KB
ENCFF051CYD.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 11.0 MB
ENCFF111NHE.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 4.5 MB
ENCFF151ZTH.bed bed (peaks); assembly: hg19 32.8 KB
ENCFF187YLY.fastq fastq (reads) 566.1 MB
ENCFF294XKC.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 4.5 MB
ENCFF321XTY.bigBed bigBed (peaks); assembly: hg19 1.4 MB
ENCFF391XZA.bigBed bigBed (peaks); assembly: GRCh38 763.1 KB
ENCFF413SVN.fastq fastq (reads) 486.9 MB
ENCFF443ABK.bed bed (peaks); assembly: GRCh38 377.6 KB
ENCFF519UHQ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 4.7 MB
ENCFF540EIN.bigBed bigBed (peaks); assembly: GRCh38 1.3 MB
ENCFF581UEA.bam bam (alignments); assembly: hg19 101.1 MB
ENCFF625XVL.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 4.3 MB
ENCFF678VMJ.bigBed bigBed (peaks); assembly: hg19 788.4 KB
ENCFF701BNI.bed bed (peaks); assembly: hg19 393.3 KB
ENCFF710RUU.bam bam (alignments); assembly: GRCh38 198.5 MB
ENCFF719MCG.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 11.2 MB
ENCFF820DWM.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 10.6 MB
ENCFF916SOX.fastq fastq (reads) 334.5 MB
ENCFF928HUA.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 11.6 MB
ENCFF972INE.bed bed (peaks); assembly: hg19 780.9 KB
ENCFF981APU.bam bam (alignments); assembly: hg19 207.3 MB
ENCSR831WYG ENCSR · via encode_api

eCLIP control experiment on HepG2 against EXOSC5

Homo sapiens

8 data files
FileTypeSize
ENCFF190LZU.fastq fastq (reads) 531.2 MB
ENCFF228TZD.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 9.2 MB
ENCFF418PCV.fastq fastq (reads) 556.9 MB
ENCFF500BEE.bam bam (alignments); assembly: hg19 234.8 MB
ENCFF531FRE.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 9.1 MB
ENCFF608WNY.bam bam (alignments); assembly: GRCh38 236.7 MB
ENCFF712GVF.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 9.0 MB
ENCFF941MAV.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 9.1 MB
ENCSR952RGL ENCSR · via encode_api

eCLIP control experiment on K562 against AQR

Homo sapiens

8 data files
FileTypeSize
ENCFF122NOF.bam bam (alignments); assembly: hg19 652.3 MB
ENCFF209ZSA.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 30.4 MB
ENCFF467AXE.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 31.3 MB
ENCFF512ICX.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 30.3 MB
ENCFF671DQC.fastq fastq (reads) 697.3 MB
ENCFF759FOS.fastq fastq (reads) 647.3 MB
ENCFF795HGN.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 29.4 MB
ENCFF899ROO.bam bam (alignments); assembly: GRCh38 673.8 MB
ENCSR290JPJ ENCSR · via encode_api

eCLIP control experiment on K562 against AATF

Homo sapiens

8 data files
FileTypeSize
ENCFF064UJY.bam bam (alignments); assembly: GRCh38 789.1 MB
ENCFF093NIR.bam bam (alignments); assembly: hg19 776.4 MB
ENCFF197PPC.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 34.9 MB
ENCFF364QTT.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 34.3 MB
ENCFF440KLK.fastq fastq (reads) 788.0 MB
ENCFF584ORU.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 33.7 MB
ENCFF607BAY.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 33.2 MB
ENCFF934QLS.fastq fastq (reads) 845.2 MB
ENCSR023PKW ENCSR · via encode_api

eCLIP experiment on K562 against EIF3G

Homo sapiens

26 data files
FileTypeSize
ENCFF031UFI.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 9.8 MB
ENCFF083KKV.bam bam (alignments); assembly: hg19 183.9 MB
ENCFF258VPL.bed bed (peaks); assembly: hg19 520.5 KB
ENCFF259ZQR.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 10.3 MB
ENCFF362BDI.bed bed (peaks); assembly: hg19 279.4 KB
ENCFF364MMW.fastq fastq (reads) 502.7 MB
ENCFF369RBP.bed bed (peaks); assembly: GRCh38 256.8 KB
ENCFF388GZP.bed bed (peaks); assembly: GRCh38 566.8 KB
ENCFF523PRE.bigBed bigBed (peaks); assembly: GRCh38 1.1 MB
ENCFF534ONM.bed bed (peaks); assembly: hg19 7.4 KB
ENCFF548DYX.fastq fastq (reads) 211.7 MB
ENCFF570LAY.bigBed bigBed (peaks); assembly: hg19 528.2 KB
ENCFF605PZM.bam bam (alignments); assembly: GRCh38 175.8 MB
ENCFF613CYM.bam bam (alignments); assembly: hg19 55.3 MB
ENCFF627GSD.fastq fastq (reads) 484.1 MB
ENCFF634UAC.bed bed (peaks); assembly: GRCh38 7.3 KB
ENCFF639CRA.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 3.0 MB
ENCFF692DXH.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 3.0 MB
ENCFF724QGF.bam bam (alignments); assembly: GRCh38 51.2 MB
ENCFF732EGK.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 2.8 MB
ENCFF743RET.bigBed bigBed (peaks); assembly: hg19 815.0 KB
ENCFF813DFW.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 9.9 MB
ENCFF827LVH.bigBed bigBed (peaks); assembly: GRCh38 499.1 KB
ENCFF897PMP.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 9.5 MB
ENCFF908IVH.fastq fastq (reads) 219.0 MB
ENCFF958RJQ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 3.1 MB
ENCSR986HXA ENCSR · via encode_api

eCLIP control experiment on HepG2 against FUS

Homo sapiens

8 data files
FileTypeSize
ENCFF078WXK.fastq fastq (reads) 546.4 MB
ENCFF117HXE.bam bam (alignments); assembly: GRCh38 483.3 MB
ENCFF407YXM.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 18.5 MB
ENCFF609YLK.fastq fastq (reads) 542.0 MB
ENCFF641UBZ.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 19.2 MB
ENCFF654ULI.bam bam (alignments); assembly: hg19 470.4 MB
ENCFF930VRG.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 18.9 MB
ENCFF967SUL.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 18.6 MB
ENCSR249ROI ENCSR · via encode_api

eCLIP experiment on K562 against HNRNPC

Homo sapiens

26 data files
FileTypeSize
ENCFF048BIQ.bam bam (alignments); assembly: GRCh38 593.7 MB
ENCFF062LWZ.bed bed (peaks); assembly: hg19 1.6 MB
ENCFF147RRK.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 100.7 MB
ENCFF149LRA.fastq fastq (reads) 586.4 MB
ENCFF159HMF.bed bed (peaks); assembly: hg19 13.4 KB
ENCFF167CDB.bed bed (peaks); assembly: GRCh38 12.5 KB
ENCFF187OQS.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 28.4 MB
ENCFF202EXL.bigBed bigBed (peaks); assembly: hg19 3.5 MB
ENCFF214HGS.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 73.4 MB
ENCFF330MMF.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 96.9 MB
ENCFF334ACF.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 29.4 MB
ENCFF381SDJ.bam bam (alignments); assembly: hg19 1.9 GB
ENCFF526OQL.bed bed (peaks); assembly: GRCh38 1.8 MB
ENCFF664RLU.bed bed (peaks); assembly: GRCh38 1.5 MB
ENCFF669MUY.fastq fastq (reads) 2.1 GB
ENCFF669YBJ.bam bam (alignments); assembly: hg19 636.6 MB
ENCFF734JPC.fastq fastq (reads) 513.9 MB
ENCFF749IQI.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 91.7 MB
ENCFF778YMU.bigBed bigBed (peaks); assembly: hg19 2.5 MB
ENCFF810SWJ.bigBed bigBed (peaks); assembly: GRCh38 2.3 MB
ENCFF865EZO.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 26.6 MB
ENCFF896JOI.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 27.6 MB
ENCFF935AZO.bam bam (alignments); assembly: GRCh38 1.8 GB
ENCFF937KFG.fastq fastq (reads) 1.8 GB
ENCFF961KTO.bigBed bigBed (peaks); assembly: GRCh38 3.3 MB
ENCFF971ZDB.bed bed (peaks); assembly: hg19 1.9 MB
ENCSR451BRX ENCSR · via encode_api

eCLIP control experiment on HepG2 against SAFB

Homo sapiens

8 data files
FileTypeSize
ENCFF147POJ.fastq fastq (reads) 662.2 MB
ENCFF151WVP.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 21.8 MB
ENCFF172IOQ.bam bam (alignments); assembly: hg19 447.8 MB
ENCFF184MJQ.fastq fastq (reads) 609.8 MB
ENCFF220AIC.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 22.7 MB
ENCFF322YUD.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 22.7 MB
ENCFF446RHU.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 21.8 MB
ENCFF829ROW.bam bam (alignments); assembly: GRCh38 460.7 MB
ENCSR832DWW ENCSR · via encode_api

eCLIP control experiment on K562 against PUM1

Homo sapiens

8 data files
FileTypeSize
ENCFF073FDN.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 13.4 MB
ENCFF222HEX.bam bam (alignments); assembly: GRCh38 307.0 MB
ENCFF294VPI.fastq fastq (reads) 621.3 MB
ENCFF344PFX.bam bam (alignments); assembly: hg19 300.9 MB
ENCFF454WIB.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 13.3 MB
ENCFF475RBN.fastq fastq (reads) 598.8 MB
ENCFF870PZG.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 13.6 MB
ENCFF913EFB.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 13.0 MB
ENCSR960OKV ENCSR · via encode_api

eCLIP control experiment on K562 against HNRNPC

Homo sapiens

8 data files
FileTypeSize
ENCFF143NLE.fastq fastq (reads) 635.7 MB
ENCFF171UGC.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 8.5 MB
ENCFF235XQO.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 8.8 MB
ENCFF309BBY.fastq fastq (reads) 578.0 MB
ENCFF338MIV.bam bam (alignments); assembly: hg19 194.8 MB
ENCFF346WLL.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 8.4 MB
ENCFF365NFD.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 8.3 MB
ENCFF824ZDF.bam bam (alignments); assembly: GRCh38 196.5 MB
ENCSR979EWD ENCSR · via encode_api

eCLIP experiment on HepG2 against STAU2

Homo sapiens

26 data files
FileTypeSize
ENCFF022VMG.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 40.4 MB
ENCFF048PWH.fastq fastq (reads) 479.5 MB
ENCFF061SBF.bigBed bigBed (peaks); assembly: GRCh38 5.2 MB
ENCFF169YHS.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 30.0 MB
ENCFF197UHX.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 29.1 MB
ENCFF202ITE.bam bam (alignments); assembly: GRCh38 616.5 MB
ENCFF314FTK.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 27.8 MB
ENCFF357LSF.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 28.6 MB
ENCFF366NPD.fastq fastq (reads) 380.8 MB
ENCFF382AIQ.bigBed bigBed (peaks); assembly: hg19 4.8 MB
ENCFF425OKT.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 41.7 MB
ENCFF446NFS.bed bed (peaks); assembly: GRCh38 2.4 MB
ENCFF559ATC.bam bam (alignments); assembly: GRCh38 913.6 MB
ENCFF591CBW.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 39.4 MB
ENCFF648BIE.bigBed bigBed (peaks); assembly: GRCh38 4.7 MB
ENCFF659GPS.fastq fastq (reads) 306.2 MB
ENCFF678FCX.bed bed (peaks); assembly: GRCh38 18.5 KB
ENCFF694MAN.bigBed bigBed (peaks); assembly: hg19 5.2 MB
ENCFF709VHF.bam bam (alignments); assembly: hg19 945.8 MB
ENCFF734LHC.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 40.6 MB
ENCFF788LMZ.bed bed (peaks); assembly: hg19 17.2 KB
ENCFF792GQD.bed bed (peaks); assembly: hg19 2.5 MB
ENCFF879BYO.bed bed (peaks); assembly: hg19 2.8 MB
ENCFF884DMT.bam bam (alignments); assembly: hg19 641.5 MB
ENCFF920RKR.fastq fastq (reads) 387.4 MB
ENCFF992ALD.bed bed (peaks); assembly: GRCh38 2.8 MB
ENCSR970FEW ENCSR · via encode_api

eCLIP experiment on HepG2 against DDX52

Homo sapiens

26 data files
FileTypeSize
ENCFF005GER.bed bed (peaks); assembly: GRCh38 3.7 KB
ENCFF013SWN.bed bed (peaks); assembly: GRCh38 1.6 MB
ENCFF037HRM.bigBed bigBed (peaks); assembly: hg19 2.7 MB
ENCFF162FCY.bigBed bigBed (peaks); assembly: hg19 2.7 MB
ENCFF257KKQ.bed bed (peaks); assembly: hg19 3.5 KB
ENCFF288FUX.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 19.6 MB
ENCFF299YXS.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 20.1 MB
ENCFF340WIB.bam bam (alignments); assembly: GRCh38 334.9 MB
ENCFF356MCF.bam bam (alignments); assembly: hg19 375.0 MB
ENCFF360FIN.bigBed bigBed (peaks); assembly: GRCh38 2.7 MB
ENCFF408KBS.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 18.4 MB
ENCFF479WLK.fastq fastq (reads) 647.2 MB
ENCFF480SDO.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 18.0 MB
ENCFF504QEC.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 18.4 MB
ENCFF522NFJ.fastq fastq (reads) 657.3 MB
ENCFF539JUN.bed bed (peaks); assembly: hg19 1.7 MB
ENCFF560TLH.fastq fastq (reads) 667.6 MB
ENCFF563XEI.bed bed (peaks); assembly: GRCh38 1.6 MB
ENCFF591WOA.bed bed (peaks); assembly: hg19 1.7 MB
ENCFF599ZVK.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 19.9 MB
ENCFF618EON.bam bam (alignments); assembly: GRCh38 358.4 MB
ENCFF684ITO.bigBed bigBed (peaks); assembly: GRCh38 2.7 MB
ENCFF879GTY.bam bam (alignments); assembly: hg19 347.0 MB
ENCFF939HML.fastq fastq (reads) 643.5 MB
ENCFF945OFF.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 18.9 MB
ENCFF953HPK.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 20.5 MB
ENCSR964VOX ENCSR · via encode_api

eCLIP experiment on K562 against UTP18

Homo sapiens

26 data files
FileTypeSize
ENCFF003MPD.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 3.8 MB
ENCFF014AWF.bed bed (peaks); assembly: hg19 374.5 KB
ENCFF026UJY.bed bed (peaks); assembly: GRCh38 362.9 KB
ENCFF033CAR.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 4.0 MB
ENCFF038OVY.fastq fastq (reads) 686.0 MB
ENCFF046FNK.bam bam (alignments); assembly: GRCh38 83.5 MB
ENCFF049JUK.bigBed bigBed (peaks); assembly: hg19 760.3 KB
ENCFF100KST.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 4.4 MB
ENCFF148JQN.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 4.1 MB
ENCFF211AAW.bam bam (alignments); assembly: GRCh38 73.7 MB
ENCFF252UGK.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 4.3 MB
ENCFF353ULN.bed bed (peaks); assembly: GRCh38 292.7 KB
ENCFF368MWK.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 3.8 MB
ENCFF379LHC.bed bed (peaks); assembly: hg19 307.4 KB
ENCFF386YUM.fastq fastq (reads) 613.4 MB
ENCFF421EUK.bigBed bigBed (peaks); assembly: hg19 661.6 KB
ENCFF456SOS.bed bed (peaks); assembly: hg19 3.7 KB
ENCFF625BWN.bigBed bigBed (peaks); assembly: GRCh38 742.8 KB
ENCFF656OVN.fastq fastq (reads) 643.2 MB
ENCFF694SHS.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 3.7 MB
ENCFF724EMZ.bam bam (alignments); assembly: hg19 77.8 MB
ENCFF757VLY.bigBed bigBed (peaks); assembly: GRCh38 634.8 KB
ENCFF783INO.bed bed (peaks); assembly: GRCh38 3.6 KB
ENCFF795DXS.fastq fastq (reads) 714.6 MB
ENCFF946PZY.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 4.2 MB
ENCFF946YXD.bam bam (alignments); assembly: hg19 86.4 MB
ENCSR145ZKN ENCSR · via encode_api

eCLIP control experiment on HepG2 against SSB

Homo sapiens

8 data files
FileTypeSize
ENCFF204GWG.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 6.8 MB
ENCFF291AXK.fastq fastq (reads) 636.4 MB
ENCFF417RUN.bam bam (alignments); assembly: GRCh38 214.5 MB
ENCFF533GVG.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 9.1 MB
ENCFF634ZXH.fastq fastq (reads) 688.7 MB
ENCFF686PVN.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 8.9 MB
ENCFF820ONK.bam bam (alignments); assembly: hg19 210.7 MB
ENCFF941EJX.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 8.9 MB
ENCSR337XGI ENCSR · via encode_api

eCLIP experiment on HepG2 against SAFB

Homo sapiens

26 data files
FileTypeSize
ENCFF024XIO.bigBed bigBed (peaks); assembly: hg19 4.9 MB
ENCFF029LOP.bigBed bigBed (peaks); assembly: GRCh38 3.6 MB
ENCFF035IYP.bed bed (peaks); assembly: hg19 2.4 MB
ENCFF040MFF.fastq fastq (reads) 691.9 MB
ENCFF056OAB.bed bed (peaks); assembly: GRCh38 2.5 MB
ENCFF112CRX.bam bam (alignments); assembly: GRCh38 904.7 MB
ENCFF112GIE.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 39.2 MB
ENCFF134UTH.fastq fastq (reads) 620.2 MB
ENCFF232WUE.bed bed (peaks); assembly: GRCh38 6.6 KB
ENCFF255QDJ.bam bam (alignments); assembly: hg19 821.4 MB
ENCFF272SVX.fastq fastq (reads) 618.3 MB
ENCFF399MVB.bed bed (peaks); assembly: GRCh38 2.4 MB
ENCFF419KEL.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 39.6 MB
ENCFF432SVT.bigBed bigBed (peaks); assembly: hg19 3.6 MB
ENCFF469SRC.bed bed (peaks); assembly: hg19 5.7 KB
ENCFF489WXE.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 35.9 MB
ENCFF526JFL.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 36.3 MB
ENCFF535RVD.bam bam (alignments); assembly: GRCh38 816.3 MB
ENCFF543ZXM.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 35.9 MB
ENCFF615AJW.bigBed bigBed (peaks); assembly: GRCh38 3.8 MB
ENCFF667EYO.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 35.4 MB
ENCFF669OQB.bam bam (alignments); assembly: hg19 914.5 MB
ENCFF707BBC.fastq fastq (reads) 694.7 MB
ENCFF896KRQ.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 38.8 MB
ENCFF932VUF.bed bed (peaks); assembly: hg19 2.6 MB
ENCFF971JOK.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 39.9 MB
ENCSR256CHX ENCSR · via encode_api

eCLIP experiment on HepG2 against PCBP1

Homo sapiens

26 data files
FileTypeSize
ENCFF041ULU.bam bam (alignments); assembly: hg19 73.0 MB
ENCFF098REE.bed bed (peaks); assembly: GRCh38 21.6 KB
ENCFF108TOJ.bed bed (peaks); assembly: hg19 22.0 KB
ENCFF121EWJ.bigBed bigBed (peaks); assembly: hg19 850.1 KB
ENCFF125HTS.fastq fastq (reads) 362.4 MB
ENCFF138HUE.bam bam (alignments); assembly: GRCh38 114.7 MB
ENCFF144ZBH.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 5.0 MB
ENCFF163UHG.bigBed bigBed (peaks); assembly: GRCh38 829.3 KB
ENCFF208ZBZ.bigBed bigBed (peaks); assembly: hg19 577.8 KB
ENCFF252BJN.bed bed (peaks); assembly: hg19 273.4 KB
ENCFF336LKZ.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 3.3 MB
ENCFF423IFM.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 3.4 MB
ENCFF469KBI.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 5.0 MB
ENCFF502OYV.bed bed (peaks); assembly: GRCh38 431.6 KB
ENCFF512ADR.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 4.9 MB
ENCFF547HEQ.bam bam (alignments); assembly: hg19 119.4 MB
ENCFF627OUC.fastq fastq (reads) 406.3 MB
ENCFF628HQO.bigBed bigBed (peaks); assembly: GRCh38 543.2 KB
ENCFF679TMH.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 3.5 MB
ENCFF725CBA.fastq fastq (reads) 331.8 MB
ENCFF737KHA.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 5.1 MB
ENCFF914VUW.bed bed (peaks); assembly: GRCh38 253.2 KB
ENCFF933ESS.bam bam (alignments); assembly: GRCh38 67.3 MB
ENCFF940CJE.bed bed (peaks); assembly: hg19 442.6 KB
ENCFF964VGV.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 3.6 MB
ENCFF973FFS.fastq fastq (reads) 361.3 MB
ENCSR328KKB ENCSR · via encode_api

eCLIP control experiment on K562 against SUPV3L1

Homo sapiens

8 data files
FileTypeSize
ENCFF148LED.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 58.9 MB
ENCFF445GIJ.bam bam (alignments); assembly: hg19 1.5 GB
ENCFF494OQG.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 56.7 MB
ENCFF701GTE.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 58.9 MB
ENCFF781OKE.bam bam (alignments); assembly: GRCh38 1.5 GB
ENCFF808KHS.fastq fastq (reads) 2.7 GB
ENCFF927QYY.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 56.7 MB
ENCFF936WEJ.fastq fastq (reads) 2.8 GB
ENCSR085JPB ENCSR · via encode_api

eCLIP experiment on HepG2 against WDR43

Homo sapiens

26 data files
FileTypeSize
ENCFF014YMA.bed bed (peaks); assembly: GRCh38 602.0 KB
ENCFF025FEX.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 6.5 MB
ENCFF034IPX.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 6.6 MB
ENCFF039OIV.bigBed bigBed (peaks); assembly: GRCh38 1.1 MB
ENCFF060BRD.bam bam (alignments); assembly: GRCh38 133.1 MB
ENCFF069PAM.bigBed bigBed (peaks); assembly: hg19 1.2 MB
ENCFF126WLG.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 6.5 MB
ENCFF133XVB.fastq fastq (reads) 532.8 MB
ENCFF177OFX.bigBed bigBed (peaks); assembly: GRCh38 1.2 MB
ENCFF291FNE.fastq fastq (reads) 524.9 MB
ENCFF362ZCB.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 6.4 MB
ENCFF416VBG.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 6.5 MB
ENCFF431WWR.bed bed (peaks); assembly: hg19 4.6 KB
ENCFF503AHN.fastq fastq (reads) 485.6 MB
ENCFF525GUS.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 6.4 MB
ENCFF569JWF.bam bam (alignments); assembly: hg19 139.6 MB
ENCFF577MTW.fastq fastq (reads) 481.7 MB
ENCFF784AMG.bed bed (peaks); assembly: hg19 643.5 KB
ENCFF847AOM.bam bam (alignments); assembly: GRCh38 135.1 MB
ENCFF868YSF.bed bed (peaks); assembly: hg19 621.0 KB
ENCFF884EHK.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 6.3 MB
ENCFF938XEE.bam bam (alignments); assembly: hg19 139.8 MB
ENCFF944ZRE.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 6.7 MB
ENCFF945NFS.bed bed (peaks); assembly: GRCh38 4.7 KB
ENCFF966QXZ.bed bed (peaks); assembly: GRCh38 628.0 KB
ENCFF977RCC.bigBed bigBed (peaks); assembly: hg19 1.2 MB
ENCSR999YGP ENCSR · via encode_api

eCLIP experiment on K562 against GRWD1

Homo sapiens

26 data files
FileTypeSize
ENCFF022OZR.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 23.0 MB
ENCFF051YGO.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 16.4 MB
ENCFF080NUM.bigBed bigBed (peaks); assembly: hg19 3.0 MB
ENCFF128BVH.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 23.1 MB
ENCFF135LNE.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 23.8 MB
ENCFF146YIO.bed bed (peaks); assembly: hg19 96.6 KB
ENCFF217MRO.bam bam (alignments); assembly: GRCh38 504.4 MB
ENCFF248ZFV.fastq fastq (reads) 327.0 MB
ENCFF250PFH.bed bed (peaks); assembly: GRCh38 1.5 MB
ENCFF282VMI.bed bed (peaks); assembly: GRCh38 1.9 MB
ENCFF315NPJ.bigBed bigBed (peaks); assembly: GRCh38 3.6 MB
ENCFF327DLL.bed bed (peaks); assembly: GRCh38 98.3 KB
ENCFF330PVJ.bam bam (alignments); assembly: GRCh38 320.5 MB
ENCFF479IAR.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 22.4 MB
ENCFF491DNL.bam bam (alignments); assembly: hg19 525.2 MB
ENCFF499RMW.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 17.0 MB
ENCFF569HJH.fastq fastq (reads) 350.0 MB
ENCFF598OCW.bigBed bigBed (peaks); assembly: GRCh38 3.0 MB
ENCFF607PIM.bed bed (peaks); assembly: hg19 1.5 MB
ENCFF727IRZ.fastq fastq (reads) 609.2 MB
ENCFF752TOA.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 16.7 MB
ENCFF757KMM.bed bed (peaks); assembly: hg19 1.8 MB
ENCFF863GEM.bigBed bigBed (peaks); assembly: hg19 3.6 MB
ENCFF885NJW.bam bam (alignments); assembly: hg19 327.9 MB
ENCFF895OFS.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 17.2 MB
ENCFF939DRW.fastq fastq (reads) 557.6 MB
ENCSR241ALC ENCSR · via encode_api

eCLIP control experiment on K562 against UTP3

Homo sapiens

8 data files
FileTypeSize
ENCFF090UAF.bam bam (alignments); assembly: GRCh38 771.2 MB
ENCFF204HIN.bam bam (alignments); assembly: hg19 755.6 MB
ENCFF350BNG.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 33.1 MB
ENCFF352XFW.fastq fastq (reads) 931.8 MB
ENCFF395XPK.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 33.8 MB
ENCFF589HIG.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 35.1 MB
ENCFF850GVH.fastq fastq (reads) 826.8 MB
ENCFF987LUJ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 34.4 MB
ENCSR925ZRV ENCSR · via encode_api

eCLIP control experiment on K562 against WRN

Homo sapiens

8 data files
FileTypeSize
ENCFF059UMY.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 34.7 MB
ENCFF068FML.bam bam (alignments); assembly: GRCh38 716.8 MB
ENCFF096XKU.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 34.9 MB
ENCFF137BBS.fastq fastq (reads) 761.6 MB
ENCFF273PGD.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 35.8 MB
ENCFF313VVY.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 33.9 MB
ENCFF467KQF.fastq fastq (reads) 858.0 MB
ENCFF922LFX.bam bam (alignments); assembly: hg19 700.1 MB
ENCSR722KGI ENCSR · via encode_api

eCLIP control experiment on HepG2 against WDR43

Homo sapiens

8 data files
FileTypeSize
ENCFF194QLJ.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 13.8 MB
ENCFF197ATB.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 14.0 MB
ENCFF274FAE.fastq fastq (reads) 220.6 MB
ENCFF535EYW.fastq fastq (reads) 207.7 MB
ENCFF673XAM.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 13.9 MB
ENCFF732NGW.bam bam (alignments); assembly: GRCh38 268.4 MB
ENCFF844FOV.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 13.9 MB
ENCFF917IQK.bam bam (alignments); assembly: hg19 266.3 MB
ENCSR356ZMO ENCSR · via encode_api

eCLIP experiment on HepG2 against AKAP1

Homo sapiens

26 data files
FileTypeSize
ENCFF075DAU.fastq fastq (reads) 472.4 MB
ENCFF122EAJ.bigBed bigBed (peaks); assembly: GRCh38 1.7 MB
ENCFF127MXD.bam bam (alignments); assembly: GRCh38 284.1 MB
ENCFF210MSW.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 13.0 MB
ENCFF233BIC.bed bed (peaks); assembly: GRCh38 944.8 KB
ENCFF271UXH.bed bed (peaks); assembly: hg19 980.8 KB
ENCFF351AQY.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 12.9 MB
ENCFF382JHI.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 12.4 MB
ENCFF413QOV.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 15.2 MB
ENCFF416NDI.bigBed bigBed (peaks); assembly: GRCh38 1.9 MB
ENCFF430MTS.bam bam (alignments); assembly: hg19 300.5 MB
ENCFF473TXX.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 14.8 MB
ENCFF509CIP.bigBed bigBed (peaks); assembly: hg19 1.8 MB
ENCFF523YBN.bigBed bigBed (peaks); assembly: hg19 1.6 MB
ENCFF575BCP.bed bed (peaks); assembly: hg19 136.1 KB
ENCFF672HYO.fastq fastq (reads) 419.0 MB
ENCFF739ERP.bed bed (peaks); assembly: GRCh38 840.7 KB
ENCFF749IUB.bed bed (peaks); assembly: GRCh38 137.7 KB
ENCFF776AQI.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 13.5 MB
ENCFF780HTF.bam bam (alignments); assembly: GRCh38 265.9 MB
ENCFF807KPM.bed bed (peaks); assembly: hg19 862.0 KB
ENCFF810DIK.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 14.6 MB
ENCFF847SYN.bam bam (alignments); assembly: hg19 277.7 MB
ENCFF852ECZ.fastq fastq (reads) 399.9 MB
ENCFF882JAU.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 14.1 MB
ENCFF990EAG.fastq fastq (reads) 448.0 MB
ENCSR040QLV ENCSR · via encode_api

eCLIP experiment on K562 against DDX21

Homo sapiens

26 data files
FileTypeSize
ENCFF005ZCI.bed bed (peaks); assembly: GRCh38 356.2 KB
ENCFF006QTI.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 10.3 MB
ENCFF028CQB.bigBed bigBed (peaks); assembly: GRCh38 753.8 KB
ENCFF099RYM.bam bam (alignments); assembly: hg19 88.2 MB
ENCFF139OJJ.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 5.5 MB
ENCFF159PUC.bigBed bigBed (peaks); assembly: GRCh38 1.3 MB
ENCFF180UZN.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 10.4 MB
ENCFF253EGX.fastq fastq (reads) 729.6 MB
ENCFF353WIB.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 5.3 MB
ENCFF363TSA.fastq fastq (reads) 700.8 MB
ENCFF371SNO.bed bed (peaks); assembly: GRCh38 746.4 KB
ENCFF378OYA.bed bed (peaks); assembly: GRCh38 2.1 KB
ENCFF402AXI.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 10.8 MB
ENCFF420HTZ.bigBed bigBed (peaks); assembly: hg19 1.3 MB
ENCFF429PEL.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 5.6 MB
ENCFF455REV.bam bam (alignments); assembly: GRCh38 166.1 MB
ENCFF485TSN.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 5.3 MB
ENCFF559UQP.bigBed bigBed (peaks); assembly: hg19 769.4 KB
ENCFF572GMO.bed bed (peaks); assembly: hg19 364.3 KB
ENCFF655QSG.bam bam (alignments); assembly: GRCh38 85.9 MB
ENCFF671GCD.fastq fastq (reads) 666.0 MB
ENCFF740MPP.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 11.0 MB
ENCFF800GPC.bed bed (peaks); assembly: hg19 2.2 KB
ENCFF845KUG.bam bam (alignments); assembly: hg19 169.9 MB
ENCFF945XNS.bed bed (peaks); assembly: hg19 747.9 KB
ENCFF946SJB.fastq fastq (reads) 681.5 MB
ENCSR202HKN ENCSR · via encode_api

eCLIP experiment on K562 against WDR3

Homo sapiens

26 data files
FileTypeSize
ENCFF053JDY.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 2.8 MB
ENCFF093FTO.bed bed (peaks); assembly: GRCh38 368.6 KB
ENCFF096AQT.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 3.4 MB
ENCFF110QAU.bed bed (peaks); assembly: GRCh38 153.4 KB
ENCFF215XPR.bed bed (peaks); assembly: hg19 911.0 B
ENCFF270QTE.fastq fastq (reads) 647.0 MB
ENCFF308MZK.bigBed bigBed (peaks); assembly: hg19 362.3 KB
ENCFF372YUO.bam bam (alignments); assembly: GRCh38 55.1 MB
ENCFF380SYQ.bed bed (peaks); assembly: hg19 160.4 KB
ENCFF416OND.bam bam (alignments); assembly: GRCh38 65.9 MB
ENCFF426QHQ.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 2.9 MB
ENCFF444UFA.bam bam (alignments); assembly: hg19 57.2 MB
ENCFF469DUE.bigBed bigBed (peaks); assembly: hg19 686.1 KB
ENCFF474ULB.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 2.7 MB
ENCFF507SLL.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 3.3 MB
ENCFF560RWD.bed bed (peaks); assembly: GRCh38 838.0 B
ENCFF593DHS.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 3.6 MB
ENCFF636LWR.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 3.4 MB
ENCFF731PVT.bam bam (alignments); assembly: hg19 70.2 MB
ENCFF733LSZ.fastq fastq (reads) 513.3 MB
ENCFF765GUO.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 3.0 MB
ENCFF787GQZ.bigBed bigBed (peaks); assembly: GRCh38 656.9 KB
ENCFF824USQ.bigBed bigBed (peaks); assembly: GRCh38 352.9 KB
ENCFF915BUQ.fastq fastq (reads) 537.0 MB
ENCFF953XOY.fastq fastq (reads) 421.4 MB
ENCFF991NPH.bed bed (peaks); assembly: hg19 391.6 KB
ENCSR599YGK ENCSR · via encode_api

eCLIP control experiment on HepG2 against TIAL1

Homo sapiens

8 data files
FileTypeSize
ENCFF079DOO.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 10.3 MB
ENCFF095YOS.fastq fastq (reads) 291.6 MB
ENCFF264FSL.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 10.1 MB
ENCFF335LFP.fastq fastq (reads) 282.9 MB
ENCFF447ZAZ.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 10.5 MB
ENCFF563EHM.bam bam (alignments); assembly: GRCh38 217.8 MB
ENCFF582MNJ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 10.3 MB
ENCFF593ZRE.bam bam (alignments); assembly: hg19 212.3 MB
ENCSR891RIC ENCSR · via encode_api

eCLIP experiment on K562 against NIPBL

Homo sapiens

26 data files
FileTypeSize
ENCFF021HWA.bigBed bigBed (peaks); assembly: hg19 1.6 MB
ENCFF022RTU.fastq fastq (reads) 835.5 MB
ENCFF090TCL.bigBed bigBed (peaks); assembly: GRCh38 2.5 MB
ENCFF092XHF.bed bed (peaks); assembly: hg19 8.6 KB
ENCFF097GJE.bed bed (peaks); assembly: GRCh38 851.3 KB
ENCFF195SFG.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 6.3 MB
ENCFF226EJN.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 12.9 MB
ENCFF239HHG.bigBed bigBed (peaks); assembly: hg19 2.7 MB
ENCFF249KWW.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 13.3 MB
ENCFF283JMP.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 6.5 MB
ENCFF325XUV.fastq fastq (reads) 625.6 MB
ENCFF400EPM.bam bam (alignments); assembly: GRCh38 134.8 MB
ENCFF461YQO.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 6.6 MB
ENCFF472YSO.bam bam (alignments); assembly: hg19 250.5 MB
ENCFF484RAM.bed bed (peaks); assembly: hg19 1.2 MB
ENCFF525NXB.bed bed (peaks); assembly: hg19 862.3 KB
ENCFF532OLG.bam bam (alignments); assembly: GRCh38 241.3 MB
ENCFF554NIV.bed bed (peaks); assembly: GRCh38 8.3 KB
ENCFF563ZUY.bed bed (peaks); assembly: GRCh38 1.2 MB
ENCFF581SNU.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 6.7 MB
ENCFF658FIC.fastq fastq (reads) 613.7 MB
ENCFF742IAV.fastq fastq (reads) 804.2 MB
ENCFF861ARK.bam bam (alignments); assembly: hg19 137.8 MB
ENCFF973PQI.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 13.4 MB
ENCFF983YQJ.bigBed bigBed (peaks); assembly: GRCh38 1.5 MB
ENCFF991MMA.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 13.8 MB
ENCSR138HJN ENCSR · via encode_api

eCLIP control experiment on HepG2 against NIP7

Homo sapiens

8 data files
FileTypeSize
ENCFF023VWU.fastq fastq (reads) 752.0 MB
ENCFF224AXJ.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 6.6 MB
ENCFF325ZEZ.bam bam (alignments); assembly: hg19 167.0 MB
ENCFF347DCI.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 6.8 MB
ENCFF637GMD.bam bam (alignments); assembly: GRCh38 170.2 MB
ENCFF641YDW.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 6.4 MB
ENCFF850JPJ.fastq fastq (reads) 787.7 MB
ENCFF924JRU.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 6.5 MB
ENCSR907EBB ENCSR · via encode_api

eCLIP control experiment on HepG2 against G3BP1

Homo sapiens

8 data files
FileTypeSize
ENCFF375RZW.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 12.0 MB
ENCFF483ETG.fastq fastq (reads) 605.0 MB
ENCFF549BBF.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 12.2 MB
ENCFF574CCO.fastq fastq (reads) 624.5 MB
ENCFF581DQC.bam bam (alignments); assembly: hg19 307.5 MB
ENCFF690KCN.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 12.4 MB
ENCFF700YZD.bam bam (alignments); assembly: GRCh38 313.5 MB
ENCFF774ZOO.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 12.3 MB
ENCSR268SKI ENCSR · via encode_api

eCLIP control experiment on K562 against DDX51

Homo sapiens

8 data files
FileTypeSize
ENCFF057EYS.fastq fastq (reads) 593.1 MB
ENCFF224JPZ.bam bam (alignments); assembly: GRCh38 562.1 MB
ENCFF272LXG.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 26.9 MB
ENCFF323GSD.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 25.6 MB
ENCFF407VKW.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 26.0 MB
ENCFF509GAY.bam bam (alignments); assembly: hg19 553.1 MB
ENCFF765PJY.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 26.5 MB
ENCFF839MJH.fastq fastq (reads) 551.6 MB
ENCSR440SUX ENCSR · via encode_api

eCLIP experiment on K562 against MATR3

Homo sapiens

26 data files
FileTypeSize
ENCFF010BJI.bam bam (alignments); assembly: hg19 274.9 MB
ENCFF014KBZ.bam bam (alignments); assembly: GRCh38 260.9 MB
ENCFF046VQV.bed bed (peaks); assembly: hg19 96.6 KB
ENCFF055OIQ.bigBed bigBed (peaks); assembly: hg19 2.0 MB
ENCFF073KHR.bigBed bigBed (peaks); assembly: GRCh38 1.8 MB
ENCFF074EAD.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 12.1 MB
ENCFF081JME.bed bed (peaks); assembly: GRCh38 923.8 KB
ENCFF121ZEY.bed bed (peaks); assembly: hg19 985.7 KB
ENCFF162SAS.bam bam (alignments); assembly: GRCh38 193.1 MB
ENCFF163VTI.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 10.8 MB
ENCFF246EPM.bed bed (peaks); assembly: GRCh38 93.4 KB
ENCFF356OIG.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 13.8 MB
ENCFF358JCT.fastq fastq (reads) 297.8 MB
ENCFF365CXY.fastq fastq (reads) 256.2 MB
ENCFF457BSQ.bam bam (alignments); assembly: hg19 208.0 MB
ENCFF470CYN.bigBed bigBed (peaks); assembly: GRCh38 2.3 MB
ENCFF558RNJ.bed bed (peaks); assembly: GRCh38 1.2 MB
ENCFF564DPG.bigBed bigBed (peaks); assembly: hg19 2.4 MB
ENCFF597BHN.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 14.7 MB
ENCFF698OGN.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 11.5 MB
ENCFF703CJM.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 15.3 MB
ENCFF752ZNH.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 11.4 MB
ENCFF776YBU.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 14.6 MB
ENCFF806OBL.fastq fastq (reads) 217.6 MB
ENCFF904GOE.bed bed (peaks); assembly: hg19 1.2 MB
ENCFF991YSW.fastq fastq (reads) 188.6 MB
ENCSR488JKQ ENCSR · via encode_api

eCLIP experiment on HepG2 against UTP18

Homo sapiens

26 data files
FileTypeSize
ENCFF002NJF.bigBed bigBed (peaks); assembly: hg19 954.4 KB
ENCFF019ITV.fastq fastq (reads) 649.0 MB
ENCFF040VQS.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 5.4 MB
ENCFF117YFR.fastq fastq (reads) 606.2 MB
ENCFF146BNV.bed bed (peaks); assembly: GRCh38 479.6 KB
ENCFF176YUS.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 5.5 MB
ENCFF196OAM.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 5.7 MB
ENCFF220TVR.bam bam (alignments); assembly: hg19 128.9 MB
ENCFF227SZN.bed bed (peaks); assembly: hg19 522.2 KB
ENCFF235ASG.bed bed (peaks); assembly: hg19 494.2 KB
ENCFF301DXX.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 5.1 MB
ENCFF399VCU.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 5.0 MB
ENCFF422COM.bigBed bigBed (peaks); assembly: GRCh38 924.5 KB
ENCFF466WOW.fastq fastq (reads) 606.7 MB
ENCFF511WWE.bam bam (alignments); assembly: GRCh38 112.9 MB
ENCFF512QJQ.bigBed bigBed (peaks); assembly: hg19 987.7 KB
ENCFF555EML.fastq fastq (reads) 566.2 MB
ENCFF569STQ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 5.3 MB
ENCFF644EIR.bed bed (peaks); assembly: GRCh38 1.3 KB
ENCFF660POU.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 5.2 MB
ENCFF701IJS.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 5.2 MB
ENCFF747AWV.bam bam (alignments); assembly: hg19 116.7 MB
ENCFF753YJQ.bigBed bigBed (peaks); assembly: GRCh38 963.5 KB
ENCFF840HCE.bed bed (peaks); assembly: GRCh38 511.2 KB
ENCFF926QBW.bed bed (peaks); assembly: hg19 1.3 KB
ENCFF978BQG.bam bam (alignments); assembly: GRCh38 123.2 MB
ENCSR580OFI ENCSR · via encode_api

eCLIP experiment on K562 against SUPV3L1

Homo sapiens

26 data files
FileTypeSize
ENCFF009JLQ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 1.3 MB
ENCFF091RCB.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 2.4 MB
ENCFF126HSF.fastq fastq (reads) 56.6 MB
ENCFF151FJE.bigBed bigBed (peaks); assembly: hg19 281.4 KB
ENCFF160AGW.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 1.2 MB
ENCFF162ZXD.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 1.2 MB
ENCFF171KZO.fastq fastq (reads) 49.4 MB
ENCFF207VRH.bed bed (peaks); assembly: hg19 107.2 KB
ENCFF239GPP.bed bed (peaks); assembly: GRCh38 1.6 KB
ENCFF243VMV.bigBed bigBed (peaks); assembly: GRCh38 364.7 KB
ENCFF321VGW.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 1.2 MB
ENCFF496FIX.bam bam (alignments); assembly: GRCh38 22.4 MB
ENCFF526SPD.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 2.3 MB
ENCFF620GJH.bam bam (alignments); assembly: hg19 23.8 MB
ENCFF712HCB.bed bed (peaks); assembly: GRCh38 160.2 KB
ENCFF739HZG.bigBed bigBed (peaks); assembly: hg19 375.8 KB
ENCFF754WPL.bigBed bigBed (peaks); assembly: GRCh38 269.4 KB
ENCFF813UKO.fastq fastq (reads) 99.7 MB
ENCFF826MPO.bed bed (peaks); assembly: GRCh38 99.6 KB
ENCFF829FDR.bam bam (alignments); assembly: GRCh38 37.6 MB
ENCFF852ZSI.bam bam (alignments); assembly: hg19 39.1 MB
ENCFF901ABJ.bed bed (peaks); assembly: hg19 1.7 KB
ENCFF942LSK.bed bed (peaks); assembly: hg19 168.2 KB
ENCFF956LBV.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 2.3 MB
ENCFF971TGH.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 2.4 MB
ENCFF987DVU.fastq fastq (reads) 86.9 MB
ENCSR018WPY ENCSR · via encode_api

eCLIP experiment on HepG2 against AQR

Homo sapiens

26 data files
FileTypeSize
ENCFF016UFV.bed bed (peaks); assembly: hg19 1.6 MB
ENCFF019WXR.fastq fastq (reads) 407.8 MB
ENCFF072DMC.bam bam (alignments); assembly: hg19 322.7 MB
ENCFF073PST.bed bed (peaks); assembly: GRCh38 1.3 MB
ENCFF135VSZ.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 14.2 MB
ENCFF159YFB.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 10.4 MB
ENCFF163SMI.bigBed bigBed (peaks); assembly: GRCh38 3.1 MB
ENCFF166EBF.fastq fastq (reads) 459.0 MB
ENCFF323PUC.bed bed (peaks); assembly: GRCh38 229.1 KB
ENCFF351RHN.bed bed (peaks); assembly: hg19 230.9 KB
ENCFF393QAA.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 13.6 MB
ENCFF455ERC.fastq fastq (reads) 543.1 MB
ENCFF480KMS.bigBed bigBed (peaks); assembly: GRCh38 2.6 MB
ENCFF484VYD.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 13.9 MB
ENCFF495SJR.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 10.6 MB
ENCFF615YND.bam bam (alignments); assembly: hg19 279.2 MB
ENCFF636MSJ.bed bed (peaks); assembly: GRCh38 1.5 MB
ENCFF752JLL.bigBed bigBed (peaks); assembly: hg19 2.7 MB
ENCFF791WOH.bed bed (peaks); assembly: hg19 1.3 MB
ENCFF817TIH.bigBed bigBed (peaks); assembly: hg19 3.1 MB
ENCFF874FLM.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 10.9 MB
ENCFF882PEQ.bam bam (alignments); assembly: GRCh38 301.9 MB
ENCFF886TQE.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 14.5 MB
ENCFF947JHV.bam bam (alignments); assembly: GRCh38 271.0 MB
ENCFF985BEH.fastq fastq (reads) 585.2 MB
ENCFF990SEI.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 10.6 MB
ENCSR816NVJ ENCSR · via encode_api

eCLIP control experiment on K562 against NIPBL

Homo sapiens

8 data files
FileTypeSize
ENCFF257INK.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 36.7 MB
ENCFF283GNU.fastq fastq (reads) 990.6 MB
ENCFF396TYB.bam bam (alignments); assembly: GRCh38 804.6 MB
ENCFF411ZIS.bam bam (alignments); assembly: hg19 778.4 MB
ENCFF605BRP.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 39.3 MB
ENCFF687KVI.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 37.5 MB
ENCFF835HJQ.fastq fastq (reads) 917.9 MB
ENCFF998UXT.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 38.4 MB
ENCSR310WYE ENCSR · via encode_api

eCLIP control experiment on HepG2 against PABPN1

Homo sapiens

8 data files
FileTypeSize
ENCFF056YAF.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 12.9 MB
ENCFF083BBO.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 12.7 MB
ENCFF204AJE.fastq fastq (reads) 512.3 MB
ENCFF224LLH.bam bam (alignments); assembly: hg19 340.4 MB
ENCFF546IMW.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 12.8 MB
ENCFF554TBF.bam bam (alignments); assembly: GRCh38 348.2 MB
ENCFF598XCN.fastq fastq (reads) 487.0 MB
ENCFF986GYN.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 13.0 MB
ENCSR130ZDS ENCSR · via encode_api

eCLIP control experiment on HepG2 against SDAD1

Homo sapiens

8 data files
FileTypeSize
ENCFF307RPY.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 19.0 MB
ENCFF484KXI.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 19.3 MB
ENCFF558BFF.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 18.5 MB
ENCFF575PPP.bam bam (alignments); assembly: hg19 424.6 MB
ENCFF831VQE.bam bam (alignments); assembly: GRCh38 434.1 MB
ENCFF908FHY.fastq fastq (reads) 597.9 MB
ENCFF932NND.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 18.7 MB
ENCFF942DWN.fastq fastq (reads) 665.6 MB
ENCSR382QLC ENCSR · via encode_api

eCLIP control experiment on K562 against APOBEC3C

Homo sapiens

8 data files
FileTypeSize
ENCFF202KDA.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 7.5 MB
ENCFF264ZLT.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 7.7 MB
ENCFF417GHU.fastq fastq (reads) 498.7 MB
ENCFF420VUM.bam bam (alignments); assembly: hg19 179.8 MB
ENCFF718JPO.fastq fastq (reads) 547.1 MB
ENCFF837QTK.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 7.4 MB
ENCFF854OMC.bam bam (alignments); assembly: GRCh38 180.2 MB
ENCFF886PUR.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 7.7 MB
ENCSR255PGS ENCSR · via encode_api

eCLIP control experiment on K562 against UTP18

Homo sapiens

8 data files
FileTypeSize
ENCFF302FOE.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 14.5 MB
ENCFF315ECX.fastq fastq (reads) 702.9 MB
ENCFF342GWG.bam bam (alignments); assembly: hg19 319.2 MB
ENCFF372JTR.fastq fastq (reads) 705.9 MB
ENCFF457RLT.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 14.9 MB
ENCFF503MUZ.bam bam (alignments); assembly: GRCh38 325.5 MB
ENCFF686HTD.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 14.2 MB
ENCFF971PBE.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 13.9 MB
ENCSR819XBT ENCSR · via encode_api

eCLIP experiment on K562 against AATF

Homo sapiens

26 data files
FileTypeSize
ENCFF009KOU.bigBed bigBed (peaks); assembly: hg19 680.4 KB
ENCFF057BVQ.fastq fastq (reads) 604.2 MB
ENCFF116CFF.bigBed bigBed (peaks); assembly: hg19 1.1 MB
ENCFF123JMS.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 6.8 MB
ENCFF197MAL.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 6.7 MB
ENCFF228NKX.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 4.4 MB
ENCFF268XIQ.fastq fastq (reads) 651.8 MB
ENCFF349HTU.bed bed (peaks); assembly: GRCh38 315.9 KB
ENCFF370NUA.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 4.7 MB
ENCFF372WIF.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 4.5 MB
ENCFF415HBM.bed bed (peaks); assembly: hg19 332.1 KB
ENCFF473EVT.bam bam (alignments); assembly: GRCh38 150.9 MB
ENCFF514KIW.bed bed (peaks); assembly: hg19 24.5 KB
ENCFF635KBS.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 9.5 MB
ENCFF645UGJ.bam bam (alignments); assembly: GRCh38 87.6 MB
ENCFF647ZMG.fastq fastq (reads) 717.1 MB
ENCFF681TZF.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 4.3 MB
ENCFF715LDJ.bed bed (peaks); assembly: hg19 606.4 KB
ENCFF745OPH.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 7.0 MB
ENCFF783AKB.bam bam (alignments); assembly: hg19 93.0 MB
ENCFF906MGJ.bam bam (alignments); assembly: hg19 157.3 MB
ENCFF931DET.bed bed (peaks); assembly: GRCh38 585.9 KB
ENCFF955LYD.bed bed (peaks); assembly: GRCh38 24.9 KB
ENCFF969VIX.bigBed bigBed (peaks); assembly: GRCh38 1.1 MB
ENCFF978PBJ.bigBed bigBed (peaks); assembly: GRCh38 651.9 KB
ENCFF990ZCZ.fastq fastq (reads) 663.6 MB
ENCSR366DGX ENCSR · via encode_api

eCLIP experiment on HepG2 against KHSRP

Homo sapiens

26 data files
FileTypeSize
ENCFF021EEK.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 34.3 MB
ENCFF137MID.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 33.2 MB
ENCFF172TOY.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 33.2 MB
ENCFF226SDL.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 33.9 MB
ENCFF324JVF.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 31.6 MB
ENCFF464FAG.bam bam (alignments); assembly: hg19 746.8 MB
ENCFF503GYR.fastq fastq (reads) 662.4 MB
ENCFF509GWT.bed bed (peaks); assembly: hg19 2.8 MB
ENCFF553APP.bed bed (peaks); assembly: hg19 106.8 KB
ENCFF558STP.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 33.5 MB
ENCFF573GBE.bigBed bigBed (peaks); assembly: GRCh38 5.5 MB
ENCFF609DDN.bigBed bigBed (peaks); assembly: hg19 5.7 MB
ENCFF611AHG.bed bed (peaks); assembly: GRCh38 2.9 MB
ENCFF630TDS.bigBed bigBed (peaks); assembly: GRCh38 5.5 MB
ENCFF701PJM.bam bam (alignments); assembly: GRCh38 729.5 MB
ENCFF771QAU.bed bed (peaks); assembly: GRCh38 106.0 KB
ENCFF830UWW.bigBed bigBed (peaks); assembly: hg19 5.4 MB
ENCFF840EOA.fastq fastq (reads) 623.6 MB
ENCFF844XLZ.fastq fastq (reads) 701.9 MB
ENCFF891IAC.bed bed (peaks); assembly: hg19 3.0 MB
ENCFF906PCP.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 31.7 MB
ENCFF950SML.fastq fastq (reads) 588.3 MB
ENCFF961WNO.bam bam (alignments); assembly: GRCh38 711.2 MB
ENCFF963RSK.bam bam (alignments); assembly: hg19 752.9 MB
ENCFF988MWD.bed bed (peaks); assembly: GRCh38 2.9 MB
ENCFF992GXR.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 32.8 MB
ENCSR155XOS ENCSR · via encode_api

eCLIP control experiment on K562 against SDAD1

Homo sapiens

8 data files
FileTypeSize
ENCFF019TFV.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 13.6 MB
ENCFF226CUA.bam bam (alignments); assembly: GRCh38 323.7 MB
ENCFF493QDI.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 14.1 MB
ENCFF542UKT.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 14.0 MB
ENCFF863JKQ.fastq fastq (reads) 641.1 MB
ENCFF953KYZ.fastq fastq (reads) 646.7 MB
ENCFF982LYY.bam bam (alignments); assembly: hg19 314.9 MB
ENCFF993YCZ.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 14.5 MB
ENCSR705DCQ ENCSR · via encode_api

eCLIP control experiment on HepG2 against HLTF

Homo sapiens

8 data files
FileTypeSize
ENCFF083UND.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 39.5 MB
ENCFF087EGO.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 39.6 MB
ENCFF191DUY.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 39.0 MB
ENCFF272ZVR.fastq fastq (reads) 888.2 MB
ENCFF395HUI.bam bam (alignments); assembly: hg19 913.7 MB
ENCFF745DZH.bam bam (alignments); assembly: GRCh38 927.7 MB
ENCFF801XSN.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 40.0 MB
ENCFF816KHR.fastq fastq (reads) 815.4 MB
ENCSR735HOK ENCSR · via encode_api

eCLIP experiment on HepG2 against YBX3

Homo sapiens

26 data files
FileTypeSize
ENCFF018RDR.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 23.3 MB
ENCFF070GQY.fastq fastq (reads) 830.2 MB
ENCFF075TIW.bed bed (peaks); assembly: hg19 49.0 KB
ENCFF124VAO.bigBed bigBed (peaks); assembly: hg19 2.7 MB
ENCFF148DUH.bam bam (alignments); assembly: GRCh38 708.2 MB
ENCFF165UCU.bigBed bigBed (peaks); assembly: GRCh38 2.6 MB
ENCFF185OEI.bed bed (peaks); assembly: GRCh38 47.6 KB
ENCFF268SII.bed bed (peaks); assembly: hg19 1.4 MB
ENCFF311PHS.bed bed (peaks); assembly: GRCh38 1.4 MB
ENCFF331WIZ.bam bam (alignments); assembly: hg19 1019.5 MB
ENCFF401TWM.bed bed (peaks); assembly: GRCh38 1.6 MB
ENCFF428UJW.fastq fastq (reads) 960.0 MB
ENCFF560ZTA.bam bam (alignments); assembly: GRCh38 967.0 MB
ENCFF570XZG.bigBed bigBed (peaks); assembly: GRCh38 3.1 MB
ENCFF593QXS.fastq fastq (reads) 983.7 MB
ENCFF594XZD.fastq fastq (reads) 1.1 GB
ENCFF662AZS.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 23.1 MB
ENCFF668DJX.bigBed bigBed (peaks); assembly: hg19 2.7 MB
ENCFF730NOU.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 22.6 MB
ENCFF771LAD.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 26.9 MB
ENCFF781YNK.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 27.2 MB
ENCFF827BCE.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 23.8 MB
ENCFF843MHP.bam bam (alignments); assembly: hg19 732.1 MB
ENCFF893OBI.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 27.8 MB
ENCFF904UKX.bed bed (peaks); assembly: hg19 1.4 MB
ENCFF988EAZ.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 26.3 MB
ENCSR647HOX ENCSR · via encode_api

eCLIP experiment on HepG2 against HLTF

Homo sapiens

26 data files
FileTypeSize
ENCFF048FDF.bed bed (peaks); assembly: GRCh38 73.6 KB
ENCFF050VIB.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 34.8 MB
ENCFF150BXG.fastq fastq (reads) 860.3 MB
ENCFF174WGM.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 35.7 MB
ENCFF211XSC.bigBed bigBed (peaks); assembly: GRCh38 5.7 MB
ENCFF250KNJ.bed bed (peaks); assembly: hg19 2.9 MB
ENCFF252MTE.bed bed (peaks); assembly: GRCh38 2.9 MB
ENCFF255ZCV.fastq fastq (reads) 836.5 MB
ENCFF275AVL.bigBed bigBed (peaks); assembly: hg19 5.8 MB
ENCFF293ZZT.bam bam (alignments); assembly: GRCh38 748.7 MB
ENCFF364NWX.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 35.9 MB
ENCFF410XHF.bed bed (peaks); assembly: hg19 71.8 KB
ENCFF414EIL.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 34.7 MB
ENCFF435YXZ.bigBed bigBed (peaks); assembly: hg19 5.7 MB
ENCFF490MGU.bed bed (peaks); assembly: hg19 3.0 MB
ENCFF497PQA.bigBed bigBed (peaks); assembly: GRCh38 5.7 MB
ENCFF541TNR.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 37.2 MB
ENCFF552BMC.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 36.3 MB
ENCFF622ZDB.fastq fastq (reads) 690.3 MB
ENCFF748PZV.bam bam (alignments); assembly: hg19 773.4 MB
ENCFF757PDP.bam bam (alignments); assembly: GRCh38 722.9 MB
ENCFF773TEB.bam bam (alignments); assembly: hg19 758.6 MB
ENCFF803VYU.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 36.6 MB
ENCFF991OSY.bed bed (peaks); assembly: GRCh38 2.9 MB
ENCFF992EIC.fastq fastq (reads) 671.9 MB
ENCFF992HAM.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 36.5 MB
ENCSR825FTY ENCSR · via encode_api

eCLIP control experiment on HepG2 against PCBP1

Homo sapiens

8 data files
FileTypeSize
ENCFF468VDU.fastq fastq (reads) 363.8 MB
ENCFF664HVC.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 14.4 MB
ENCFF693OCX.fastq fastq (reads) 381.4 MB
ENCFF759UTZ.bam bam (alignments); assembly: GRCh38 345.7 MB
ENCFF768KXS.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 14.5 MB
ENCFF852WIW.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 14.1 MB
ENCFF931AYF.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 14.0 MB
ENCFF935TUD.bam bam (alignments); assembly: hg19 339.1 MB
ENCSR111USM ENCSR · via encode_api

eCLIP control experiment on K562 against SAFB

Homo sapiens

8 data files
FileTypeSize
ENCFF085YZL.fastq fastq (reads) 608.3 MB
ENCFF160TEI.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 20.3 MB
ENCFF285HZG.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 19.0 MB
ENCFF426DYM.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 19.7 MB
ENCFF840WOP.bam bam (alignments); assembly: hg19 388.7 MB
ENCFF843CNP.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 19.6 MB
ENCFF855ENR.fastq fastq (reads) 577.4 MB
ENCFF963HES.bam bam (alignments); assembly: GRCh38 399.3 MB
ENCSR322HHA ENCSR · via encode_api

eCLIP experiment on HepG2 against TIAL1

Homo sapiens

26 data files
FileTypeSize
ENCFF062MYF.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 13.1 MB
ENCFF078OCN.bigBed bigBed (peaks); assembly: hg19 2.0 MB
ENCFF080ZJK.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 15.1 MB
ENCFF089ZJS.bigBed bigBed (peaks); assembly: GRCh38 1.6 MB
ENCFF118ANT.bam bam (alignments); assembly: hg19 292.1 MB
ENCFF164ZGA.fastq fastq (reads) 220.3 MB
ENCFF253ZDJ.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 15.5 MB
ENCFF297REJ.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 12.4 MB
ENCFF302ROS.bed bed (peaks); assembly: GRCh38 1.2 MB
ENCFF387ZAH.bed bed (peaks); assembly: hg19 53.4 KB
ENCFF413UKK.bam bam (alignments); assembly: GRCh38 212.7 MB
ENCFF430UQQ.fastq fastq (reads) 246.9 MB
ENCFF456DAU.bed bed (peaks); assembly: hg19 1.2 MB
ENCFF467UOO.bed bed (peaks); assembly: GRCh38 936.2 KB
ENCFF473IIG.bed bed (peaks); assembly: hg19 1001.8 KB
ENCFF513PTO.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 15.3 MB
ENCFF612HOP.bed bed (peaks); assembly: GRCh38 51.9 KB
ENCFF613MXF.bigBed bigBed (peaks); assembly: GRCh38 2.0 MB
ENCFF620WSX.bam bam (alignments); assembly: hg19 228.1 MB
ENCFF624IBZ.bigBed bigBed (peaks); assembly: hg19 1.7 MB
ENCFF674HCV.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 12.7 MB
ENCFF708YAL.fastq fastq (reads) 213.6 MB
ENCFF777OKN.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 12.0 MB
ENCFF835AWK.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 15.7 MB
ENCFF902OZA.bam bam (alignments); assembly: GRCh38 282.4 MB
ENCFF959XKN.fastq fastq (reads) 189.5 MB
ENCSR734ZHL ENCSR · via encode_api

eCLIP experiment on K562 against UTP3

Homo sapiens

26 data files
FileTypeSize
ENCFF028GAJ.bed bed (peaks); assembly: GRCh38 472.0 B
ENCFF037SFC.fastq fastq (reads) 756.9 MB
ENCFF085FSS.fastq fastq (reads) 715.4 MB
ENCFF106YFV.bed bed (peaks); assembly: GRCh38 516.7 KB
ENCFF115DFJ.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 1.8 MB
ENCFF122OMX.bed bed (peaks); assembly: hg19 515.9 KB
ENCFF182NRE.bam bam (alignments); assembly: hg19 28.9 MB
ENCFF237VQW.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 719.0 KB
ENCFF247UQF.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 1.7 MB
ENCFF306WLX.bigBed bigBed (peaks); assembly: hg19 1.0 MB
ENCFF317ALA.bam bam (alignments); assembly: hg19 13.2 MB
ENCFF363DGG.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 764.2 KB
ENCFF484NSW.bed bed (peaks); assembly: GRCh38 860.1 KB
ENCFF584CAL.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 715.9 KB
ENCFF584UPG.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 766.5 KB
ENCFF612CUM.fastq fastq (reads) 356.5 MB
ENCFF612HAQ.bam bam (alignments); assembly: GRCh38 13.1 MB
ENCFF669GII.bigBed bigBed (peaks); assembly: GRCh38 1.0 MB
ENCFF683WHG.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 1.7 MB
ENCFF712PFK.bigBed bigBed (peaks); assembly: hg19 1.6 MB
ENCFF739KMN.bed bed (peaks); assembly: hg19 863.1 KB
ENCFF762RZG.bigBed bigBed (peaks); assembly: GRCh38 1.6 MB
ENCFF826UUS.bam bam (alignments); assembly: GRCh38 28.4 MB
ENCFF832JDM.bed bed (peaks); assembly: hg19 561.0 B
ENCFF901ESA.fastq fastq (reads) 376.9 MB
ENCFF979FJC.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 1.8 MB
ENCSR183FVK ENCSR · via encode_api

eCLIP control experiment on K562 against MATR3

Homo sapiens

8 data files
FileTypeSize
ENCFF230VBS.fastq fastq (reads) 280.5 MB
ENCFF245VHY.bam bam (alignments); assembly: hg19 228.4 MB
ENCFF323UFB.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 10.3 MB
ENCFF366ILA.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 10.6 MB
ENCFF367ETI.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 9.8 MB
ENCFF401KWK.fastq fastq (reads) 279.7 MB
ENCFF431HEG.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 10.1 MB
ENCFF691TZE.bam bam (alignments); assembly: GRCh38 236.3 MB
ENCSR154CSN ENCSR · via encode_api

eCLIP experiment on K562 against DDX52

Homo sapiens

26 data files
FileTypeSize
ENCFF018JZA.fastq fastq (reads) 621.0 MB
ENCFF023FQH.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 11.9 MB
ENCFF036SXG.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 11.3 MB
ENCFF059IMV.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 10.9 MB
ENCFF121SHB.bed bed (peaks); assembly: GRCh38 940.4 KB
ENCFF198ULC.bed bed (peaks); assembly: GRCh38 25.5 KB
ENCFF328GNH.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 11.4 MB
ENCFF343EUG.bed bed (peaks); assembly: hg19 958.2 KB
ENCFF354DPT.bam bam (alignments); assembly: hg19 188.7 MB
ENCFF508LHH.bed bed (peaks); assembly: GRCh38 796.2 KB
ENCFF529NNX.bam bam (alignments); assembly: GRCh38 182.8 MB
ENCFF533ART.fastq fastq (reads) 441.9 MB
ENCFF535QEG.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 11.7 MB
ENCFF586YIZ.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 10.7 MB
ENCFF592QGC.fastq fastq (reads) 457.4 MB
ENCFF636YLN.bigBed bigBed (peaks); assembly: hg19 1.6 MB
ENCFF687HMY.bigBed bigBed (peaks); assembly: GRCh38 1.4 MB
ENCFF698DHB.bam bam (alignments); assembly: hg19 196.4 MB
ENCFF716JEM.bigBed bigBed (peaks); assembly: hg19 1.5 MB
ENCFF729XQQ.bam bam (alignments); assembly: GRCh38 184.7 MB
ENCFF794QAR.fastq fastq (reads) 594.9 MB
ENCFF818KZJ.bed bed (peaks); assembly: hg19 841.6 KB
ENCFF851VGO.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 11.3 MB
ENCFF881DWJ.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 10.9 MB
ENCFF888SME.bed bed (peaks); assembly: hg19 25.7 KB
ENCFF918MTI.bigBed bigBed (peaks); assembly: GRCh38 1.6 MB
ENCSR716AKC ENCSR · via encode_api

eCLIP control experiment on HepG2 against AQR

Homo sapiens

8 data files
FileTypeSize
ENCFF215CWH.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 22.7 MB
ENCFF217IZI.bam bam (alignments); assembly: GRCh38 488.8 MB
ENCFF234PQJ.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 22.7 MB
ENCFF547VBL.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 20.9 MB
ENCFF673RJW.bam bam (alignments); assembly: hg19 449.2 MB
ENCFF746PPV.fastq fastq (reads) 996.1 MB
ENCFF862RKC.fastq fastq (reads) 1.0 GB
ENCFF901VMX.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 20.9 MB
ENCSR876EYA ENCSR · via encode_api

eCLIP experiment on HepG2 against BCLAF1

Homo sapiens

26 data files
FileTypeSize
ENCFF033JHH.fastq fastq (reads) 569.9 MB
ENCFF094BEK.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 30.1 MB
ENCFF136WMY.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 29.8 MB
ENCFF139XGO.bam bam (alignments); assembly: hg19 704.7 MB
ENCFF274RUU.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 21.9 MB
ENCFF324DAY.bigBed bigBed (peaks); assembly: hg19 4.1 MB
ENCFF355PUZ.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 21.2 MB
ENCFF376EDQ.bam bam (alignments); assembly: hg19 463.1 MB
ENCFF463HOI.fastq fastq (reads) 319.5 MB
ENCFF490SCE.fastq fastq (reads) 572.4 MB
ENCFF510PFS.bam bam (alignments); assembly: GRCh38 450.7 MB
ENCFF620THE.bigBed bigBed (peaks); assembly: GRCh38 5.0 MB
ENCFF662YRG.bigBed bigBed (peaks); assembly: hg19 4.9 MB
ENCFF673LOJ.bam bam (alignments); assembly: GRCh38 676.7 MB
ENCFF691JPV.bed bed (peaks); assembly: hg19 2.1 MB
ENCFF695FAB.fastq fastq (reads) 324.1 MB
ENCFF723VKJ.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 29.1 MB
ENCFF763JKN.bigBed bigBed (peaks); assembly: GRCh38 4.1 MB
ENCFF797YXM.bed bed (peaks); assembly: GRCh38 2.1 MB
ENCFF810EUA.bed bed (peaks); assembly: GRCh38 728.0 KB
ENCFF829FER.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 29.4 MB
ENCFF837DWG.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 21.5 MB
ENCFF858HBB.bed bed (peaks); assembly: hg19 2.6 MB
ENCFF919WGD.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 22.0 MB
ENCFF930HHV.bed bed (peaks); assembly: hg19 731.3 KB
ENCFF936QEL.bed bed (peaks); assembly: GRCh38 2.6 MB
ENCSR251FMT ENCSR · via encode_api

eCLIP control experiment on K562 against GRWD1

Homo sapiens

8 data files
FileTypeSize
ENCFF214CCK.fastq fastq (reads) 575.4 MB
ENCFF353TXG.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 11.2 MB
ENCFF398EKK.fastq fastq (reads) 559.3 MB
ENCFF553CRA.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 11.4 MB
ENCFF562TVO.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 10.8 MB
ENCFF727JVX.bam bam (alignments); assembly: GRCh38 232.2 MB
ENCFF811ULI.bam bam (alignments); assembly: hg19 230.4 MB
ENCFF984SWE.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 10.7 MB
ENCSR069EVH ENCSR · via encode_api

eCLIP experiment on K562 against FUS

Homo sapiens

26 data files
FileTypeSize
ENCFF079PJI.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 47.6 MB
ENCFF113CHP.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 40.7 MB
ENCFF210ZRQ.bam bam (alignments); assembly: GRCh38 1.1 GB
ENCFF297CPZ.bam bam (alignments); assembly: hg19 1.2 GB
ENCFF307BRQ.fastq fastq (reads) 1.2 GB
ENCFF336ZEJ.fastq fastq (reads) 1.0 GB
ENCFF341YQM.bam bam (alignments); assembly: GRCh38 946.9 MB
ENCFF362UCS.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 43.4 MB
ENCFF364FLH.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 39.5 MB
ENCFF390SKN.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 38.8 MB
ENCFF443KJS.bed bed (peaks); assembly: GRCh38 2.1 MB
ENCFF446LST.bed bed (peaks); assembly: hg19 2.1 MB
ENCFF476CZI.bigBed bigBed (peaks); assembly: hg19 3.9 MB
ENCFF549AQN.bigBed bigBed (peaks); assembly: GRCh38 4.3 MB
ENCFF553EEX.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 37.7 MB
ENCFF554AWP.fastq fastq (reads) 1.2 GB
ENCFF565ILV.bed bed (peaks); assembly: GRCh38 2.3 MB
ENCFF588UCW.bigBed bigBed (peaks); assembly: hg19 4.4 MB
ENCFF674POL.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 45.4 MB
ENCFF763LLF.bam bam (alignments); assembly: hg19 987.5 MB
ENCFF764SZR.bed bed (peaks); assembly: hg19 2.3 MB
ENCFF777FHS.bed bed (peaks); assembly: hg19 96.3 KB
ENCFF780JIH.bigBed bigBed (peaks); assembly: GRCh38 3.9 MB
ENCFF841ZLV.fastq fastq (reads) 1.4 GB
ENCFF861KMV.bed bed (peaks); assembly: GRCh38 99.1 KB
ENCFF871EJX.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 45.5 MB
ENCSR820UYE ENCSR · via encode_api

eCLIP experiment on HepG2 against PABPN1

Homo sapiens

26 data files
FileTypeSize
ENCFF009PZB.fastq fastq (reads) 419.3 MB
ENCFF028AVQ.bigBed bigBed (peaks); assembly: GRCh38 2.5 MB
ENCFF049DAF.fastq fastq (reads) 522.4 MB
ENCFF107VBS.bigBed bigBed (peaks); assembly: hg19 2.6 MB
ENCFF145LAD.bam bam (alignments); assembly: GRCh38 317.1 MB
ENCFF185CCB.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 15.7 MB
ENCFF190DLZ.bed bed (peaks); assembly: hg19 1.2 MB
ENCFF441BOM.bam bam (alignments); assembly: hg19 337.7 MB
ENCFF482ULC.fastq fastq (reads) 492.4 MB
ENCFF544SIB.bigBed bigBed (peaks); assembly: GRCh38 2.0 MB
ENCFF615GBE.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 16.7 MB
ENCFF709FEU.bed bed (peaks); assembly: GRCh38 87.8 KB
ENCFF715LJJ.bed bed (peaks); assembly: GRCh38 1.2 MB
ENCFF755RZB.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 16.7 MB
ENCFF767IPH.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 16.4 MB
ENCFF805VZB.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 15.1 MB
ENCFF831ZJY.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 15.8 MB
ENCFF878GRC.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 17.0 MB
ENCFF890DJI.bed bed (peaks); assembly: GRCh38 1.2 MB
ENCFF922VHA.bam bam (alignments); assembly: hg19 369.6 MB
ENCFF927DMJ.bed bed (peaks); assembly: hg19 1.2 MB
ENCFF937NJC.fastq fastq (reads) 448.1 MB
ENCFF974AOE.bam bam (alignments); assembly: GRCh38 358.1 MB
ENCFF975HKC.bed bed (peaks); assembly: hg19 88.1 KB
ENCFF978BHG.bigBed bigBed (peaks); assembly: hg19 2.0 MB
ENCFF996QBV.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 16.3 MB
ENCSR586DGV ENCSR · via encode_api

eCLIP experiment on K562 against ZNF800

Homo sapiens

26 data files
FileTypeSize
ENCFF009EJC.fastq fastq (reads) 843.8 MB
ENCFF028XAW.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 9.5 MB
ENCFF105HMJ.bed bed (peaks); assembly: GRCh38 54.9 KB
ENCFF126RXG.bigBed bigBed (peaks); assembly: GRCh38 1.1 MB
ENCFF270YPL.bam bam (alignments); assembly: hg19 131.2 MB
ENCFF303MEM.bam bam (alignments); assembly: hg19 189.4 MB
ENCFF334TXK.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 9.6 MB
ENCFF338YTK.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 5.5 MB
ENCFF348CSA.bigBed bigBed (peaks); assembly: hg19 1.8 MB
ENCFF417BRA.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 5.7 MB
ENCFF420ZEI.bam bam (alignments); assembly: GRCh38 184.4 MB
ENCFF425RIV.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 9.3 MB
ENCFF579NNP.bed bed (peaks); assembly: hg19 54.3 KB
ENCFF631INY.fastq fastq (reads) 533.4 MB
ENCFF642EHH.fastq fastq (reads) 719.1 MB
ENCFF672MYG.bed bed (peaks); assembly: GRCh38 871.1 KB
ENCFF673MQR.bigBed bigBed (peaks); assembly: GRCh38 1.8 MB
ENCFF693MLV.bam bam (alignments); assembly: GRCh38 123.6 MB
ENCFF710MTZ.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 5.5 MB
ENCFF732MSM.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 9.0 MB
ENCFF737BYL.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 5.3 MB
ENCFF737XQX.fastq fastq (reads) 442.0 MB
ENCFF780IYG.bed bed (peaks); assembly: GRCh38 610.8 KB
ENCFF787LVR.bed bed (peaks); assembly: hg19 872.2 KB
ENCFF806GQI.bed bed (peaks); assembly: hg19 632.1 KB
ENCFF947GNX.bigBed bigBed (peaks); assembly: hg19 1.1 MB
ENCSR715QWM ENCSR · via encode_api

RNA-seq on HepG2 cells treated with a CRISPR gRNA against SDAD1. (SDAD1-BGHcLV07)

Homo sapiens

92 data files
FileTypeSize
ENCFF003SNR.tsv tsv (gene quantifications) 9.5 MB
ENCFF012EAO.bigWig bigWig (minus strand signal of unique reads) 74.9 MB
ENCFF022FCS.tsv tsv (transcript quantifications) 24.9 MB
ENCFF025VGZ.bigWig bigWig (minus strand signal of unique reads) 48.4 MB
ENCFF032ZGA.bigWig bigWig (minus strand signal of all reads) 56.6 MB
ENCFF042GRC.tsv tsv (transcript quantifications) 27.2 MB
ENCFF043ABL.bigWig bigWig (plus strand signal of unique reads) 72.1 MB
ENCFF046HBS.bigWig bigWig (minus strand signal of unique reads) 78.9 MB
ENCFF062QZV.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF067ATF.bigWig bigWig (minus strand signal of all reads) 87.6 MB
ENCFF081EKY.bigWig bigWig (plus strand signal of unique reads) 80.3 MB
ENCFF091WYJ.tsv tsv (gene quantifications) 10.4 MB
ENCFF096KSK.bigWig bigWig (plus strand signal of all reads) 77.8 MB
ENCFF105OUN.bigWig bigWig (plus strand signal of unique reads) 49.4 MB
ENCFF136TOM.bigWig bigWig (plus strand signal of unique reads) 52.5 MB
ENCFF137VUJ.bam bam (alignments) 2.0 GB
ENCFF140WQV.bigWig bigWig (minus strand signal of unique reads) 51.1 MB
ENCFF167GCX.tsv tsv (transcript quantifications) 27.4 MB
ENCFF193ZVI.bam bam (alignments) 5.1 GB
ENCFF199HDR.tsv tsv (transcript quantifications) 25.3 MB
ENCFF202PUV.bigWig bigWig (plus strand signal of all reads) 88.2 MB
ENCFF227XUQ.tsv tsv (transcript quantifications) 25.0 MB
ENCFF269PZE.tsv tsv (gene quantifications) 9.4 MB
ENCFF275FBJ.bam bam (alignments) 2.1 GB
ENCFF278ILV.fastq fastq (reads) 3.2 GB
ENCFF279SPL.bam bam (alignments) 4.2 GB
ENCFF284HWX.fastq fastq (reads) 1.5 GB
ENCFF287LAB.bigWig bigWig (plus strand signal of unique reads) 76.7 MB
ENCFF301LEB.bam bam (transcriptome alignments) 7.0 GB
ENCFF310AYQ.bigWig bigWig (plus strand signal of all reads) 80.4 MB
ENCFF328APG.bigWig bigWig (plus strand signal of all reads) 57.4 MB
ENCFF354ERW.tsv tsv (transcript quantifications) 29.9 MB
ENCFF356VYV.bigWig bigWig (plus strand signal of all reads) 88.9 MB
ENCFF363JNU.bigWig bigWig (minus strand signal of unique reads) 74.3 MB
ENCFF375JED.bigWig bigWig (minus strand signal of unique reads) 45.6 MB
ENCFF378NRR.bigWig bigWig (minus strand signal of unique reads) 51.1 MB
ENCFF399HES.bigWig bigWig (plus strand signal of unique reads) 80.8 MB
ENCFF400DAN.bam bam (alignments) 2.5 GB
ENCFF415QHY.bigWig bigWig (minus strand signal of all reads) 87.6 MB
ENCFF418OMA.bigWig bigWig (minus strand signal of all reads) 87.1 MB
ENCFF422ECR.bigWig bigWig (plus strand signal of unique reads) 46.9 MB
ENCFF430GZX.bigWig bigWig (plus strand signal of all reads) 88.9 MB
ENCFF506WCP.bam bam (alignments) 4.2 GB
ENCFF525ALH.bigWig bigWig (plus strand signal of all reads) 53.4 MB
ENCFF540OMC.tar tar (differential splicing quantifications) 3.1 MB
ENCFF551MVW.fastq fastq (reads) 3.2 GB
ENCFF574SRX.bigWig bigWig (plus strand signal of unique reads) 80.8 MB
ENCFF575HUB.bigWig bigWig (plus strand signal of all reads) 49.9 MB
ENCFF587RIH.bigWig bigWig (minus strand signal of all reads) 51.6 MB
ENCFF611YWC.bigWig bigWig (plus strand signal of unique reads) 52.4 MB
ENCFF626YPH.bam bam (transcriptome alignments) 3.4 GB
ENCFF632YEL.bigWig bigWig (minus strand signal of all reads) 56.4 MB
ENCFF639YUD.tsv tsv (differential expression quantifications) 1.8 MB
ENCFF652MBH.bam bam (transcriptome alignments) 3.4 GB
ENCFF654TTY.bam bam (alignments) 4.2 GB
ENCFF667ZPA.bam bam (alignments) 2.5 GB
ENCFF672WDT.bam bam (transcriptome alignments) 3.9 GB
ENCFF675LPT.bigWig bigWig (minus strand signal of all reads) 52.3 MB
ENCFF680AJG.bam bam (alignments) 5.2 GB
ENCFF682TWM.tsv tsv (transcript quantifications) 29.8 MB
ENCFF691OOY.bigWig bigWig (plus strand signal of unique reads) 49.6 MB
ENCFF695MVM.tar tar (differential splicing quantifications) 12.2 MB
ENCFF698OJM.bam bam (alignments) 5.2 GB
ENCFF721KPR.bigWig bigWig (minus strand signal of all reads) 79.2 MB
ENCFF723RMG.bam bam (alignments) 2.5 GB
ENCFF734GAW.tsv tsv (gene quantifications) 9.1 MB
ENCFF739EGB.bigWig bigWig (plus strand signal of all reads) 52.5 MB
ENCFF745TYB.bigWig bigWig (minus strand signal of all reads) 80.2 MB
ENCFF769SVY.tsv tsv (differential expression quantifications) 2.7 MB
ENCFF771ZLD.bigWig bigWig (minus strand signal of all reads) 56.7 MB
ENCFF776JMR.bigWig bigWig (plus strand signal of unique reads) 52.4 MB
ENCFF805PFP.tsv tsv (differential expression quantifications) 4.0 MB
ENCFF805WJI.bam bam (transcriptome alignments) 8.1 GB
ENCFF818ZRN.fastq fastq (reads) 1.5 GB
ENCFF831GNB.tar tar (differential splicing quantifications) 2.7 MB
ENCFF832ZSG.bigWig bigWig (minus strand signal of unique reads) 78.9 MB
ENCFF839NDQ.bigWig bigWig (plus strand signal of all reads) 81.5 MB
ENCFF847IOP.tsv tsv (transcript quantifications) 25.4 MB
ENCFF858UTV.tsv tsv (gene quantifications) 10.4 MB
ENCFF866YZI.bigWig bigWig (minus strand signal of all reads) 48.8 MB
ENCFF879UWQ.bigWig bigWig (minus strand signal of unique reads) 48.1 MB
ENCFF883DAP.bigWig bigWig (plus strand signal of all reads) 57.9 MB
ENCFF893ZDD.tsv tsv (gene quantifications) 9.1 MB
ENCFF906HFD.bigWig bigWig (minus strand signal of unique reads) 78.4 MB
ENCFF918UUP.bigWig bigWig (minus strand signal of unique reads) 70.3 MB
ENCFF929JSZ.bam bam (alignments) 2.0 GB
ENCFF930LHU.tsv tsv (differential expression quantifications) 2.0 MB
ENCFF933GTE.bigWig bigWig (minus strand signal of unique reads) 51.1 MB
ENCFF934EER.bigWig bigWig (minus strand signal of all reads) 76.5 MB
ENCFF950OXQ.bigWig bigWig (plus strand signal of unique reads) 76.0 MB
ENCFF958OHY.bigWig bigWig (plus strand signal of all reads) 57.8 MB
ENCFF988FMP.bam bam (transcriptome alignments) 7.0 GB
ENCSR642GBC ENCSR · via encode_api

RNA-seq on K562 cells treated with a CRISPR gRNA against RPS3. (RPS3-BGKcLV04-B)

Homo sapiens

92 data files
FileTypeSize
ENCFF011FYZ.bigWig bigWig (plus strand signal of all reads) 118.6 MB
ENCFF012NKF.bigWig bigWig (plus strand signal of unique reads) 73.0 MB
ENCFF022JRQ.bam bam (alignments) 4.1 GB
ENCFF025ATL.bigWig bigWig (minus strand signal of all reads) 107.0 MB
ENCFF029GNM.tsv tsv (transcript quantifications) 27.4 MB
ENCFF033ZPH.tsv tsv (transcript quantifications) 29.8 MB
ENCFF077GLO.bigWig bigWig (plus strand signal of unique reads) 99.2 MB
ENCFF093FWS.bigWig bigWig (minus strand signal of all reads) 84.0 MB
ENCFF112HCY.bigWig bigWig (minus strand signal of all reads) 78.2 MB
ENCFF114OML.bigWig bigWig (minus strand signal of unique reads) 103.4 MB
ENCFF118OFA.tar tar (differential splicing quantifications) 3.7 MB
ENCFF132GMB.bam bam (alignments) 3.5 GB
ENCFF135JWY.tsv tsv (transcript quantifications) 24.9 MB
ENCFF142GPM.bigWig bigWig (plus strand signal of all reads) 109.1 MB
ENCFF142XWH.tsv tsv (transcript quantifications) 25.3 MB
ENCFF147BTU.bigWig bigWig (minus strand signal of unique reads) 76.2 MB
ENCFF149LHN.bigWig bigWig (plus strand signal of unique reads) 82.4 MB
ENCFF156QDM.bam bam (alignments) 2.9 GB
ENCFF169KMD.bam bam (transcriptome alignments) 5.0 GB
ENCFF179ZJC.tsv tsv (differential expression quantifications) 2.0 MB
ENCFF180HMH.bam bam (alignments) 3.6 GB
ENCFF190KFM.bam bam (transcriptome alignments) 7.3 GB
ENCFF192JNK.bigWig bigWig (minus strand signal of all reads) 115.8 MB
ENCFF202OKS.tsv tsv (transcript quantifications) 29.9 MB
ENCFF204AIX.bigWig bigWig (plus strand signal of all reads) 118.6 MB
ENCFF214MOU.bigWig bigWig (minus strand signal of unique reads) 81.3 MB
ENCFF223RNN.tsv tsv (gene quantifications) 10.4 MB
ENCFF233ETN.bam bam (alignments) 4.1 GB
ENCFF248WOH.bigWig bigWig (plus strand signal of all reads) 92.1 MB
ENCFF257LWW.bam bam (alignments) 5.1 GB
ENCFF259LMY.bam bam (alignments) 5.0 GB
ENCFF298PRY.bigWig bigWig (plus strand signal of unique reads) 106.1 MB
ENCFF305RKG.bigWig bigWig (minus strand signal of unique reads) 75.6 MB
ENCFF320MCX.bigWig bigWig (minus strand signal of unique reads) 101.3 MB
ENCFF343TAA.bigWig bigWig (minus strand signal of unique reads) 80.3 MB
ENCFF357BIA.bigWig bigWig (plus strand signal of unique reads) 103.8 MB
ENCFF397DHV.tsv tsv (gene quantifications) 9.4 MB
ENCFF416RXU.bigWig bigWig (minus strand signal of all reads) 90.8 MB
ENCFF422AJK.tsv tsv (gene quantifications) 9.5 MB
ENCFF432XAD.bigWig bigWig (plus strand signal of all reads) 79.5 MB
ENCFF443FXF.tsv tsv (gene quantifications) 10.4 MB
ENCFF458RBL.tsv tsv (transcript quantifications) 24.9 MB
ENCFF473QLA.bam bam (alignments) 2.9 GB
ENCFF475NXM.bam bam (alignments) 5.1 GB
ENCFF482GSG.bigWig bigWig (plus strand signal of unique reads) 106.1 MB
ENCFF502PFE.tsv tsv (differential expression quantifications) 1.8 MB
ENCFF504FJU.bigWig bigWig (minus strand signal of all reads) 91.7 MB
ENCFF527EHR.bam bam (alignments) 4.1 GB
ENCFF544FKV.fastq fastq (reads) 2.0 GB
ENCFF557JON.bigWig bigWig (minus strand signal of all reads) 116.9 MB
ENCFF578JZA.bam bam (transcriptome alignments) 6.4 GB
ENCFF596BCV.bigWig bigWig (plus strand signal of all reads) 117.5 MB
ENCFF618QST.bigWig bigWig (plus strand signal of all reads) 101.7 MB
ENCFF624YQH.bigWig bigWig (plus strand signal of unique reads) 100.4 MB
ENCFF625FHA.tar tar (differential splicing quantifications) 12.4 MB
ENCFF632YGB.bigWig bigWig (minus strand signal of unique reads) 97.0 MB
ENCFF639KUL.bigWig bigWig (minus strand signal of unique reads) 97.8 MB
ENCFF657EQL.fastq fastq (reads) 3.0 GB
ENCFF682FHG.bigWig bigWig (plus strand signal of unique reads) 82.3 MB
ENCFF690FYM.fastq fastq (reads) 2.0 GB
ENCFF692PFY.tar tar (differential splicing quantifications) 4.4 MB
ENCFF732KFB.bigWig bigWig (minus strand signal of all reads) 116.9 MB
ENCFF742ZIL.bigWig bigWig (minus strand signal of all reads) 91.7 MB
ENCFF751BEX.bigWig bigWig (plus strand signal of unique reads) 78.0 MB
ENCFF777RYQ.fastq fastq (reads) 3.0 GB
ENCFF781OFB.bam bam (alignments) 2.9 GB
ENCFF794QED.bigWig bigWig (minus strand signal of all reads) 104.5 MB
ENCFF808CUS.tsv tsv (gene quantifications) 9.1 MB
ENCFF812WYB.bigWig bigWig (plus strand signal of all reads) 106.0 MB
ENCFF816JBH.tsv tsv (transcript quantifications) 27.5 MB
ENCFF818WAW.bigWig bigWig (plus strand signal of unique reads) 95.0 MB
ENCFF819ICJ.tsv tsv (transcript quantifications) 25.3 MB
ENCFF820FSY.bigWig bigWig (minus strand signal of all reads) 82.1 MB
ENCFF835SFV.bigWig bigWig (minus strand signal of unique reads) 92.5 MB
ENCFF839YLO.bigWig bigWig (plus strand signal of all reads) 93.0 MB
ENCFF853MFX.bam bam (transcriptome alignments) 4.4 GB
ENCFF892OIU.bigWig bigWig (minus strand signal of unique reads) 80.3 MB
ENCFF898CBQ.tsv tsv (differential expression quantifications) 2.8 MB
ENCFF902ODM.bigWig bigWig (minus strand signal of unique reads) 103.5 MB
ENCFF908NWV.bigWig bigWig (plus strand signal of unique reads) 77.6 MB
ENCFF909SBY.bigWig bigWig (plus strand signal of all reads) 93.0 MB
ENCFF929DFG.bam bam (transcriptome alignments) 4.3 GB
ENCFF941VOF.bigWig bigWig (minus strand signal of all reads) 99.9 MB
ENCFF946BZA.bam bam (transcriptome alignments) 6.3 GB
ENCFF964EEE.bam bam (alignments) 3.6 GB
ENCFF975LII.bigWig bigWig (plus strand signal of all reads) 83.3 MB
ENCFF980KYA.bigWig bigWig (minus strand signal of unique reads) 71.1 MB
ENCFF986NPS.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF992MFP.tsv tsv (differential expression quantifications) 4.3 MB
ENCFF997TCP.tsv tsv (gene quantifications) 9.1 MB
ENCFF997ZNV.bigWig bigWig (plus strand signal of unique reads) 83.3 MB
ENCFF998LUC.bigWig bigWig (plus strand signal of all reads) 85.6 MB
ENCSR964YLV ENCSR · via encode_api

RNA-seq on HepG2 cells treated with a CRISPR gRNA against EIF3H. (EIF3H-BGHcLV05-B)

Homo sapiens

92 data files
FileTypeSize
ENCFF013HID.fastq fastq (reads) 2.2 GB
ENCFF023ZAL.tar tar (differential splicing quantifications) 3.8 MB
ENCFF036PPZ.fastq fastq (reads) 2.6 GB
ENCFF039RTF.bam bam (transcriptome alignments) 5.0 GB
ENCFF052LLF.bigWig bigWig (plus strand signal of all reads) 72.7 MB
ENCFF058TYD.tsv tsv (gene quantifications) 10.4 MB
ENCFF063XOD.bigWig bigWig (plus strand signal of all reads) 76.3 MB
ENCFF074DYG.bigWig bigWig (minus strand signal of unique reads) 70.9 MB
ENCFF074RLX.bigWig bigWig (plus strand signal of unique reads) 73.8 MB
ENCFF089YXV.tsv tsv (transcript quantifications) 27.1 MB
ENCFF094BSA.bigWig bigWig (minus strand signal of unique reads) 67.6 MB
ENCFF134GNH.bigWig bigWig (minus strand signal of unique reads) 70.7 MB
ENCFF135SEM.bigWig bigWig (minus strand signal of all reads) 78.6 MB
ENCFF143LFH.tsv tsv (gene quantifications) 9.1 MB
ENCFF146ZAG.bam bam (alignments) 3.4 GB
ENCFF152ESV.bam bam (alignments) 4.2 GB
ENCFF162KNA.bam bam (alignments) 3.5 GB
ENCFF167XME.bigWig bigWig (plus strand signal of unique reads) 69.4 MB
ENCFF168TRF.bigWig bigWig (minus strand signal of unique reads) 67.9 MB
ENCFF180WHU.bigWig bigWig (plus strand signal of unique reads) 71.2 MB
ENCFF198PWH.bigWig bigWig (plus strand signal of unique reads) 76.3 MB
ENCFF239GHB.bam bam (transcriptome alignments) 5.0 GB
ENCFF252FOW.bigWig bigWig (minus strand signal of all reads) 78.6 MB
ENCFF272TGG.tsv tsv (transcript quantifications) 25.0 MB
ENCFF283ADK.bigWig bigWig (plus strand signal of unique reads) 69.1 MB
ENCFF297DGO.bigWig bigWig (minus strand signal of unique reads) 74.9 MB
ENCFF301PBP.tsv tsv (differential expression quantifications) 4.2 MB
ENCFF303NKE.bigWig bigWig (minus strand signal of unique reads) 74.8 MB
ENCFF325EXI.bam bam (transcriptome alignments) 6.2 GB
ENCFF329HKV.tsv tsv (gene quantifications) 9.1 MB
ENCFF332BAI.bam bam (alignments) 2.8 GB
ENCFF339KWQ.fastq fastq (reads) 2.1 GB
ENCFF364CMO.bigWig bigWig (minus strand signal of all reads) 73.2 MB
ENCFF371UOX.bam bam (alignments) 2.8 GB
ENCFF384GQD.bigWig bigWig (plus strand signal of unique reads) 76.5 MB
ENCFF386WAZ.tsv tsv (gene quantifications) 9.5 MB
ENCFF409JVZ.tsv tsv (transcript quantifications) 29.9 MB
ENCFF409LXH.bigWig bigWig (plus strand signal of all reads) 74.4 MB
ENCFF419DNU.tsv tsv (gene quantifications) 10.4 MB
ENCFF429KPF.bigWig bigWig (minus strand signal of unique reads) 75.7 MB
ENCFF442UIX.tsv tsv (transcript quantifications) 25.4 MB
ENCFF444CHN.bam bam (alignments) 3.4 GB
ENCFF448RFM.bigWig bigWig (minus strand signal of all reads) 77.8 MB
ENCFF461YQG.bigWig bigWig (plus strand signal of all reads) 84.1 MB
ENCFF492VLP.fastq fastq (reads) 2.7 GB
ENCFF493PWA.bigWig bigWig (minus strand signal of all reads) 68.5 MB
ENCFF494VDV.bigWig bigWig (plus strand signal of all reads) 79.6 MB
ENCFF504QHC.tsv tsv (transcript quantifications) 25.0 MB
ENCFF510DQX.tsv tsv (differential expression quantifications) 2.8 MB
ENCFF514VBK.bam bam (transcriptome alignments) 5.8 GB
ENCFF515WQA.bigWig bigWig (minus strand signal of all reads) 83.8 MB
ENCFF521HNJ.bigWig bigWig (plus strand signal of all reads) 78.3 MB
ENCFF538XPE.bam bam (alignments) 3.4 GB
ENCFF569FHP.bigWig bigWig (minus strand signal of all reads) 77.5 MB
ENCFF591OTO.bam bam (alignments) 2.8 GB
ENCFF631INS.bam bam (alignments) 4.3 GB
ENCFF644YXO.bigWig bigWig (minus strand signal of unique reads) 62.5 MB
ENCFF647LRU.bigWig bigWig (plus strand signal of unique reads) 63.9 MB
ENCFF648WCM.bigWig bigWig (plus strand signal of all reads) 79.5 MB
ENCFF663RHV.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF668VOO.bigWig bigWig (minus strand signal of all reads) 83.8 MB
ENCFF681LIC.bigWig bigWig (plus strand signal of unique reads) 72.3 MB
ENCFF688OCW.bigWig bigWig (plus strand signal of all reads) 69.4 MB
ENCFF711VQR.tsv tsv (gene quantifications) 9.5 MB
ENCFF713POP.bigWig bigWig (plus strand signal of all reads) 84.8 MB
ENCFF717CJO.tar tar (differential splicing quantifications) 13.8 MB
ENCFF737ONQ.bigWig bigWig (plus strand signal of unique reads) 72.1 MB
ENCFF741TUN.bigWig bigWig (plus strand signal of unique reads) 77.3 MB
ENCFF746WTE.tsv tsv (transcript quantifications) 27.3 MB
ENCFF750EUC.bigWig bigWig (minus strand signal of all reads) 75.4 MB
ENCFF767WAR.bam bam (transcriptome alignments) 7.1 GB
ENCFF784DDL.bigWig bigWig (minus strand signal of unique reads) 72.3 MB
ENCFF795CZX.bam bam (alignments) 3.5 GB
ENCFF816ZDL.bam bam (alignments) 4.3 GB
ENCFF824CKC.bigWig bigWig (plus strand signal of unique reads) 72.1 MB
ENCFF844CAN.tar tar (differential splicing quantifications) 3.1 MB
ENCFF851ENQ.bigWig bigWig (minus strand signal of unique reads) 70.6 MB
ENCFF857QDH.bigWig bigWig (minus strand signal of unique reads) 67.0 MB
ENCFF858QCV.tsv tsv (transcript quantifications) 25.4 MB
ENCFF870EPA.tsv tsv (differential expression quantifications) 1.8 MB
ENCFF887VIB.bigWig bigWig (plus strand signal of all reads) 74.3 MB
ENCFF910QMP.tsv tsv (differential expression quantifications) 2.0 MB
ENCFF917DIJ.bigWig bigWig (minus strand signal of all reads) 83.2 MB
ENCFF937PAS.bam bam (alignments) 3.5 GB
ENCFF946IPC.bigWig bigWig (plus strand signal of all reads) 84.8 MB
ENCFF960JXM.bigWig bigWig (minus strand signal of unique reads) 69.7 MB
ENCFF968EPI.bam bam (transcriptome alignments) 6.2 GB
ENCFF970ADO.bigWig bigWig (plus strand signal of all reads) 78.9 MB
ENCFF976GRZ.bigWig bigWig (plus strand signal of unique reads) 68.3 MB
ENCFF980DMO.tsv tsv (transcript quantifications) 29.9 MB
ENCFF983NBY.bigWig bigWig (minus strand signal of all reads) 73.5 MB
ENCFF985KTR.bigWig bigWig (minus strand signal of all reads) 71.8 MB
ENCSR471INA ENCSR · via encode_api

RNA-seq on HepG2 cells treated with a CRISPR gRNA against SRSF4. (SRSF4-BGHcLV05-B)

Homo sapiens

92 data files
FileTypeSize
ENCFF008AGQ.bigWig bigWig (plus strand signal of unique reads) 73.5 MB
ENCFF009SQC.bam bam (transcriptome alignments) 3.5 GB
ENCFF039VLZ.bigWig bigWig (minus strand signal of all reads) 59.0 MB
ENCFF045AMH.bigWig bigWig (plus strand signal of all reads) 54.2 MB
ENCFF054UQD.bigWig bigWig (plus strand signal of all reads) 88.8 MB
ENCFF063SYU.bigWig bigWig (minus strand signal of unique reads) 50.8 MB
ENCFF071FHI.tsv tsv (transcript quantifications) 29.9 MB
ENCFF097ONS.bigWig bigWig (minus strand signal of unique reads) 75.2 MB
ENCFF100OSF.bigWig bigWig (minus strand signal of all reads) 77.8 MB
ENCFF111KZJ.tsv tsv (transcript quantifications) 27.4 MB
ENCFF126BYR.bigWig bigWig (minus strand signal of all reads) 53.4 MB
ENCFF126SEY.fastq fastq (reads) 1.4 GB
ENCFF134RKW.bigWig bigWig (plus strand signal of all reads) 90.1 MB
ENCFF136WET.bigWig bigWig (plus strand signal of all reads) 83.3 MB
ENCFF153GRS.bigWig bigWig (plus strand signal of unique reads) 77.4 MB
ENCFF161USL.tar tar (differential splicing quantifications) 3.7 MB
ENCFF167KPM.bam bam (transcriptome alignments) 7.7 GB
ENCFF177TBL.bigWig bigWig (minus strand signal of unique reads) 52.5 MB
ENCFF204PDZ.bam bam (alignments) 3.7 GB
ENCFF220IQJ.bam bam (alignments) 4.5 GB
ENCFF220SBW.bigWig bigWig (plus strand signal of unique reads) 53.7 MB
ENCFF227HAF.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF229LJE.fastq fastq (reads) 1.5 GB
ENCFF263HWH.bigWig bigWig (plus strand signal of all reads) 55.8 MB
ENCFF270GXF.bam bam (transcriptome alignments) 4.0 GB
ENCFF279PMA.tsv tsv (gene quantifications) 9.1 MB
ENCFF299XOT.bam bam (alignments) 4.7 GB
ENCFF299XTH.tsv tsv (differential expression quantifications) 4.1 MB
ENCFF305DES.fastq fastq (reads) 2.9 GB
ENCFF313IFH.bigWig bigWig (minus strand signal of all reads) 58.9 MB
ENCFF321FXQ.tsv tsv (gene quantifications) 9.1 MB
ENCFF321NSL.bigWig bigWig (plus strand signal of unique reads) 54.4 MB
ENCFF347BWT.bigWig bigWig (minus strand signal of unique reads) 72.0 MB
ENCFF362LGP.tar tar (differential splicing quantifications) 13.5 MB
ENCFF363QSW.bigWig bigWig (minus strand signal of all reads) 89.0 MB
ENCFF367PFS.bigWig bigWig (plus strand signal of unique reads) 80.0 MB
ENCFF428LJI.bam bam (alignments) 4.7 GB
ENCFF428RFA.bam bam (alignments) 2.4 GB
ENCFF472XFX.fastq fastq (reads) 2.9 GB
ENCFF495TXM.tsv tsv (gene quantifications) 9.4 MB
ENCFF503WKI.bigWig bigWig (minus strand signal of all reads) 55.0 MB
ENCFF505ZPU.bigWig bigWig (minus strand signal of unique reads) 78.3 MB
ENCFF527ZRT.bam bam (alignments) 1.9 GB
ENCFF529NXC.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF530FVH.tsv tsv (transcript quantifications) 27.2 MB
ENCFF534YIC.tsv tsv (differential expression quantifications) 2.8 MB
ENCFF540NYA.bigWig bigWig (plus strand signal of unique reads) 76.7 MB
ENCFF542AWJ.bam bam (transcriptome alignments) 6.7 GB
ENCFF556VGJ.bigWig bigWig (minus strand signal of unique reads) 52.8 MB
ENCFF557CZD.tsv tsv (transcript quantifications) 25.4 MB
ENCFF612EDT.tsv tsv (transcript quantifications) 25.3 MB
ENCFF617YYG.bam bam (alignments) 2.3 GB
ENCFF622JPN.tsv tsv (transcript quantifications) 24.9 MB
ENCFF629FOW.tsv tsv (differential expression quantifications) 1.8 MB
ENCFF632QPG.bigWig bigWig (plus strand signal of all reads) 59.8 MB
ENCFF633HAG.tsv tsv (transcript quantifications) 25.0 MB
ENCFF649YHA.tsv tsv (gene quantifications) 10.4 MB
ENCFF656QUU.bigWig bigWig (minus strand signal of all reads) 87.8 MB
ENCFF681XHU.bigWig bigWig (plus strand signal of all reads) 59.7 MB
ENCFF682GQF.tsv tsv (gene quantifications) 10.4 MB
ENCFF694YUE.bigWig bigWig (plus strand signal of all reads) 59.8 MB
ENCFF720ECQ.bigWig bigWig (plus strand signal of unique reads) 48.9 MB
ENCFF723ZYG.bigWig bigWig (minus strand signal of unique reads) 79.3 MB
ENCFF735PBF.tsv tsv (transcript quantifications) 29.8 MB
ENCFF741KQQ.bigWig bigWig (minus strand signal of unique reads) 79.2 MB
ENCFF777HML.bam bam (alignments) 1.9 GB
ENCFF779STL.bigWig bigWig (plus strand signal of unique reads) 54.0 MB
ENCFF792FKD.tar tar (differential splicing quantifications) 3.0 MB
ENCFF799ANM.bam bam (alignments) 1.9 GB
ENCFF803NRY.tsv tsv (gene quantifications) 9.5 MB
ENCFF813MGP.bigWig bigWig (plus strand signal of all reads) 78.8 MB
ENCFF834NEH.bigWig bigWig (minus strand signal of all reads) 80.3 MB
ENCFF844AVR.bigWig bigWig (plus strand signal of unique reads) 80.9 MB
ENCFF845ATY.bigWig bigWig (minus strand signal of unique reads) 75.7 MB
ENCFF869KRV.bigWig bigWig (plus strand signal of unique reads) 80.8 MB
ENCFF871HYW.bigWig bigWig (plus strand signal of unique reads) 51.2 MB
ENCFF874QZF.bam bam (transcriptome alignments) 6.7 GB
ENCFF888NKZ.bam bam (alignments) 3.7 GB
ENCFF889PCR.bigWig bigWig (plus strand signal of all reads) 90.1 MB
ENCFF890PGX.bigWig bigWig (minus strand signal of all reads) 58.9 MB
ENCFF930YLA.bigWig bigWig (minus strand signal of all reads) 89.0 MB
ENCFF932PII.bigWig bigWig (plus strand signal of all reads) 81.3 MB
ENCFF940CSW.bigWig bigWig (minus strand signal of all reads) 82.0 MB
ENCFF940GPH.bigWig bigWig (minus strand signal of all reads) 51.7 MB
ENCFF954SBB.bigWig bigWig (plus strand signal of all reads) 52.5 MB
ENCFF955CUB.bigWig bigWig (plus strand signal of unique reads) 52.0 MB
ENCFF957MEX.bam bam (alignments) 2.4 GB
ENCFF967BND.bigWig bigWig (minus strand signal of unique reads) 47.8 MB
ENCFF969NYY.bigWig bigWig (minus strand signal of unique reads) 53.2 MB
ENCFF985RWS.bigWig bigWig (minus strand signal of unique reads) 50.2 MB
ENCFF987HEX.bam bam (transcriptome alignments) 3.4 GB
ENCFF994XVV.bam bam (alignments) 3.7 GB
ENCSR341TTW ENCSR · via encode_api

Control CRISPR gRNA against no target in K562 cells followed by RNA-seq. (NT-BGKcLV06)

Homo sapiens

84 data files
FileTypeSize
ENCFF050WWM.bigWig bigWig (plus strand signal of all reads) 88.7 MB
ENCFF051ULG.bigWig bigWig (plus strand signal of all reads) 77.0 MB
ENCFF069OPF.bam bam (alignments) 3.5 GB
ENCFF077QCP.bigWig bigWig (plus strand signal of all reads) 79.3 MB
ENCFF084LFJ.tsv tsv (transcript quantifications) 27.4 MB
ENCFF084PNE.bam bam (alignments) 3.7 GB
ENCFF088NOQ.bam bam (alignments) 2.8 GB
ENCFF096BED.bam bam (alignments) 3.0 GB
ENCFF110VAI.bam bam (alignments) 3.7 GB
ENCFF189WLD.bigWig bigWig (minus strand signal of all reads) 87.3 MB
ENCFF194GHC.bam bam (alignments) 3.1 GB
ENCFF201DUU.tsv tsv (gene quantifications) 9.1 MB
ENCFF220GQM.bigWig bigWig (plus strand signal of unique reads) 77.2 MB
ENCFF225GTL.bam bam (alignments) 2.8 GB
ENCFF248ZJY.bigWig bigWig (plus strand signal of all reads) 75.9 MB
ENCFF257QTL.tsv tsv (transcript quantifications) 24.9 MB
ENCFF276QUN.bigWig bigWig (minus strand signal of unique reads) 70.5 MB
ENCFF280UWA.bigWig bigWig (minus strand signal of unique reads) 68.7 MB
ENCFF292HDT.bam bam (transcriptome alignments) 5.3 GB
ENCFF302YLH.bigWig bigWig (plus strand signal of all reads) 81.6 MB
ENCFF307KTM.bigWig bigWig (plus strand signal of unique reads) 77.5 MB
ENCFF314DNT.bigWig bigWig (minus strand signal of all reads) 86.0 MB
ENCFF320LQI.bigWig bigWig (minus strand signal of unique reads) 76.8 MB
ENCFF323OCE.bam bam (alignments) 3.7 GB
ENCFF324MOP.bigWig bigWig (minus strand signal of all reads) 76.2 MB
ENCFF326JLH.bam bam (transcriptome alignments) 5.0 GB
ENCFF334VSU.bigWig bigWig (plus strand signal of unique reads) 70.8 MB
ENCFF347CHD.tsv tsv (transcript quantifications) 29.8 MB
ENCFF350EDH.bam bam (alignments) 3.8 GB
ENCFF366PWL.bigWig bigWig (plus strand signal of unique reads) 74.2 MB
ENCFF378KNS.fastq fastq (reads) 2.0 GB
ENCFF381GWI.bigWig bigWig (minus strand signal of unique reads) 77.4 MB
ENCFF404WEJ.bigWig bigWig (minus strand signal of unique reads) 70.2 MB
ENCFF407IED.bigWig bigWig (minus strand signal of all reads) 87.3 MB
ENCFF410CIO.bigWig bigWig (minus strand signal of all reads) 87.6 MB
ENCFF450PUT.bigWig bigWig (minus strand signal of all reads) 74.5 MB
ENCFF467IYJ.fastq fastq (reads) 2.0 GB
ENCFF472YAM.bigWig bigWig (plus strand signal of unique reads) 69.2 MB
ENCFF475EXD.bigWig bigWig (minus strand signal of all reads) 75.6 MB
ENCFF482WNE.bigWig bigWig (plus strand signal of unique reads) 79.6 MB
ENCFF486BWG.bam bam (transcriptome alignments) 4.7 GB
ENCFF496UEZ.bigWig bigWig (plus strand signal of all reads) 88.3 MB
ENCFF498HYN.bigWig bigWig (plus strand signal of unique reads) 77.9 MB
ENCFF500LUU.bigWig bigWig (minus strand signal of unique reads) 71.6 MB
ENCFF504RCA.bigWig bigWig (plus strand signal of all reads) 87.2 MB
ENCFF517JCJ.bam bam (transcriptome alignments) 4.3 GB
ENCFF531YHX.bam bam (alignments) 2.9 GB
ENCFF549YUW.bigWig bigWig (plus strand signal of all reads) 77.2 MB
ENCFF576MZT.bigWig bigWig (plus strand signal of unique reads) 72.1 MB
ENCFF579BTT.bigWig bigWig (minus strand signal of unique reads) 72.2 MB
ENCFF583TXE.bigWig bigWig (plus strand signal of all reads) 78.5 MB
ENCFF585AQX.bigWig bigWig (minus strand signal of all reads) 77.8 MB
ENCFF586TGE.tsv tsv (gene quantifications) 10.4 MB
ENCFF593JVU.fastq fastq (reads) 2.1 GB
ENCFF616BYI.tsv tsv (gene quantifications) 10.4 MB
ENCFF627GVY.bigWig bigWig (minus strand signal of all reads) 80.1 MB
ENCFF660QMU.bigWig bigWig (plus strand signal of all reads) 88.3 MB
ENCFF698EOE.bigWig bigWig (minus strand signal of all reads) 86.7 MB
ENCFF703IQD.bigWig bigWig (plus strand signal of all reads) 88.7 MB
ENCFF718GRU.bigWig bigWig (plus strand signal of unique reads) 72.2 MB
ENCFF755RCU.bam bam (transcriptome alignments) 4.6 GB
ENCFF765XBK.bigWig bigWig (minus strand signal of all reads) 87.6 MB
ENCFF774VVA.tsv tsv (transcript quantifications) 24.9 MB
ENCFF777ULR.bigWig bigWig (minus strand signal of all reads) 77.5 MB
ENCFF789ILX.tsv tsv (transcript quantifications) 29.8 MB
ENCFF792ZQT.bigWig bigWig (minus strand signal of unique reads) 75.8 MB
ENCFF795ZDQ.tsv tsv (transcript quantifications) 27.4 MB
ENCFF796GRU.bigWig bigWig (minus strand signal of unique reads) 75.4 MB
ENCFF857JET.tsv tsv (gene quantifications) 9.5 MB
ENCFF860BAF.fastq fastq (reads) 2.1 GB
ENCFF860SYQ.bam bam (transcriptome alignments) 4.4 GB
ENCFF875FCR.bigWig bigWig (minus strand signal of unique reads) 75.7 MB
ENCFF895WWO.bigWig bigWig (plus strand signal of unique reads) 78.7 MB
ENCFF903RUY.bigWig bigWig (plus strand signal of unique reads) 73.3 MB
ENCFF904ITQ.tsv tsv (gene quantifications) 9.5 MB
ENCFF906ZTH.bigWig bigWig (minus strand signal of unique reads) 77.7 MB
ENCFF917YCZ.bigWig bigWig (plus strand signal of unique reads) 79.5 MB
ENCFF920RHO.tsv tsv (transcript quantifications) 25.3 MB
ENCFF924GAH.bigWig bigWig (plus strand signal of all reads) 87.8 MB
ENCFF957WOH.bigWig bigWig (minus strand signal of unique reads) 67.2 MB
ENCFF960YVK.bam bam (alignments) 3.8 GB
ENCFF980LWZ.tsv tsv (transcript quantifications) 25.3 MB
ENCFF986GCV.bam bam (alignments) 3.0 GB
ENCFF991WLV.tsv tsv (gene quantifications) 9.1 MB
ENCSR354RSR ENCSR · via encode_api

RNA-seq on K562 cells treated with a CRISPR gRNA against HNRNPH1. (HNRNPH1-BGKcLV06)

Homo sapiens

92 data files
FileTypeSize
ENCFF010QGC.bigWig bigWig (plus strand signal of unique reads) 90.0 MB
ENCFF036OFC.bam bam (alignments) 3.6 GB
ENCFF039DFP.tsv tsv (gene quantifications) 10.4 MB
ENCFF053ORS.bigWig bigWig (plus strand signal of all reads) 74.2 MB
ENCFF069SAK.fastq fastq (reads) 2.6 GB
ENCFF078ZCH.bam bam (transcriptome alignments) 5.6 GB
ENCFF080AOQ.tsv tsv (transcript quantifications) 25.3 MB
ENCFF097QAK.tar tar (differential splicing quantifications) 4.3 MB
ENCFF099KFB.bigWig bigWig (minus strand signal of unique reads) 74.3 MB
ENCFF115NBD.bigWig bigWig (plus strand signal of all reads) 93.6 MB
ENCFF116PSY.bam bam (alignments) 3.5 GB
ENCFF123JCJ.bigWig bigWig (minus strand signal of all reads) 99.8 MB
ENCFF131HJI.bam bam (alignments) 4.5 GB
ENCFF136VBK.bam bam (transcriptome alignments) 5.6 GB
ENCFF140HOX.bigWig bigWig (plus strand signal of unique reads) 76.0 MB
ENCFF150MDZ.bigWig bigWig (minus strand signal of unique reads) 87.7 MB
ENCFF154EGO.bigWig bigWig (plus strand signal of unique reads) 85.9 MB
ENCFF155CZF.fastq fastq (reads) 2.6 GB
ENCFF171TJO.bigWig bigWig (minus strand signal of all reads) 100.7 MB
ENCFF181EQX.bigWig bigWig (minus strand signal of all reads) 100.7 MB
ENCFF184EYV.tsv tsv (transcript quantifications) 25.3 MB
ENCFF191CHJ.tsv tsv (transcript quantifications) 27.4 MB
ENCFF197QVN.bigWig bigWig (minus strand signal of unique reads) 66.1 MB
ENCFF226BKW.bigWig bigWig (minus strand signal of unique reads) 70.0 MB
ENCFF243LVX.tsv tsv (differential expression quantifications) 2.8 MB
ENCFF244VCG.bigWig bigWig (plus strand signal of unique reads) 81.5 MB
ENCFF245WCJ.bigWig bigWig (minus strand signal of unique reads) 74.1 MB
ENCFF250VEV.bigWig bigWig (plus strand signal of all reads) 101.9 MB
ENCFF272YBP.bigWig bigWig (plus strand signal of unique reads) 90.4 MB
ENCFF290ZJY.tsv tsv (transcript quantifications) 24.9 MB
ENCFF296HUW.bigWig bigWig (minus strand signal of unique reads) 82.7 MB
ENCFF302ZFU.bigWig bigWig (plus strand signal of unique reads) 90.8 MB
ENCFF317AIR.tsv tsv (differential expression quantifications) 4.2 MB
ENCFF321KLS.bigWig bigWig (minus strand signal of unique reads) 79.3 MB
ENCFF321QDB.bigWig bigWig (plus strand signal of unique reads) 71.8 MB
ENCFF324EHY.bam bam (alignments) 3.6 GB
ENCFF340BMJ.bigWig bigWig (minus strand signal of all reads) 86.8 MB
ENCFF340MHE.bigWig bigWig (minus strand signal of all reads) 77.2 MB
ENCFF379BZR.bigWig bigWig (plus strand signal of all reads) 84.6 MB
ENCFF381QRI.bigWig bigWig (minus strand signal of unique reads) 88.3 MB
ENCFF386EYQ.bigWig bigWig (minus strand signal of all reads) 72.9 MB
ENCFF391OGZ.bigWig bigWig (plus strand signal of all reads) 90.4 MB
ENCFF391OKE.tsv tsv (gene quantifications) 9.4 MB
ENCFF407YTZ.bam bam (transcriptome alignments) 4.3 GB
ENCFF428GVR.tsv tsv (differential expression quantifications) 2.0 MB
ENCFF445LSV.bigWig bigWig (minus strand signal of all reads) 85.5 MB
ENCFF450URT.bigWig bigWig (plus strand signal of unique reads) 76.5 MB
ENCFF469MXL.bigWig bigWig (minus strand signal of all reads) 85.5 MB
ENCFF511YUN.bigWig bigWig (minus strand signal of all reads) 75.5 MB
ENCFF515CYQ.bam bam (transcriptome alignments) 6.4 GB
ENCFF526NXZ.bigWig bigWig (minus strand signal of unique reads) 74.8 MB
ENCFF535LYO.bigWig bigWig (plus strand signal of all reads) 76.5 MB
ENCFF539VDE.bam bam (transcriptome alignments) 4.9 GB
ENCFF540EOY.bam bam (alignments) 4.5 GB
ENCFF544DAJ.bigWig bigWig (plus strand signal of unique reads) 68.0 MB
ENCFF571CIB.bigWig bigWig (minus strand signal of unique reads) 88.7 MB
ENCFF573OBT.fastq fastq (reads) 2.0 GB
ENCFF593YNL.bigWig bigWig (plus strand signal of unique reads) 70.8 MB
ENCFF626BTS.bam bam (alignments) 3.4 GB
ENCFF628WNQ.bam bam (alignments) 2.8 GB
ENCFF629NWB.bigWig bigWig (plus strand signal of all reads) 86.6 MB
ENCFF631LHC.bigWig bigWig (minus strand signal of all reads) 91.9 MB
ENCFF634WEO.bigWig bigWig (plus strand signal of unique reads) 76.1 MB
ENCFF644KTC.bam bam (alignments) 2.8 GB
ENCFF650XSZ.tsv tsv (transcript quantifications) 29.8 MB
ENCFF654PVR.tar tar (differential splicing quantifications) 3.6 MB
ENCFF655UZO.bam bam (alignments) 4.4 GB
ENCFF672MYB.bigWig bigWig (plus strand signal of all reads) 101.2 MB
ENCFF679MZP.tsv tsv (transcript quantifications) 24.9 MB
ENCFF693SKF.tsv tsv (gene quantifications) 9.1 MB
ENCFF696QMS.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF704XXS.tsv tsv (gene quantifications) 9.1 MB
ENCFF709GDJ.tsv tsv (gene quantifications) 9.5 MB
ENCFF709ZGC.bigWig bigWig (plus strand signal of all reads) 78.6 MB
ENCFF713MXN.tsv tsv (gene quantifications) 10.4 MB
ENCFF725EXX.bigWig bigWig (minus strand signal of unique reads) 69.3 MB
ENCFF728DPC.tsv tsv (transcript quantifications) 29.8 MB
ENCFF774ALV.bam bam (transcriptome alignments) 4.3 GB
ENCFF776MNO.bigWig bigWig (plus strand signal of all reads) 88.4 MB
ENCFF818JWU.bam bam (alignments) 3.6 GB
ENCFF835XYB.tar tar (differential splicing quantifications) 15.2 MB
ENCFF846DWS.bam bam (alignments) 3.5 GB
ENCFF879XKG.bam bam (alignments) 2.8 GB
ENCFF907QIL.bigWig bigWig (plus strand signal of all reads) 102.0 MB
ENCFF926VRS.bigWig bigWig (minus strand signal of all reads) 83.5 MB
ENCFF934CDA.bigWig bigWig (minus strand signal of all reads) 89.3 MB
ENCFF938RCC.tsv tsv (transcript quantifications) 27.4 MB
ENCFF972IHP.bigWig bigWig (minus strand signal of unique reads) 83.6 MB
ENCFF972LAV.fastq fastq (reads) 1.9 GB
ENCFF989CLS.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF990ODH.bigWig bigWig (plus strand signal of unique reads) 84.6 MB
ENCFF996VGC.bigWig bigWig (plus strand signal of all reads) 86.5 MB
ENCSR215FRI ENCSR · via encode_api

RNA-seq on HepG2 cells treated with an shRNA knockdown against PRPF4. (PRPF4-BGHLV37-B)

Homo sapiens

92 data files
FileTypeSize
ENCFF019RIP.tsv tsv (gene quantifications) 9.5 MB
ENCFF019TUL.tsv tsv (transcript quantifications) 24.9 MB
ENCFF027RZD.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF057PLE.bigWig bigWig (plus strand signal of all reads) 89.1 MB
ENCFF067CNF.tsv tsv (gene quantifications) 10.4 MB
ENCFF069IEV.bigWig bigWig (plus strand signal of all reads) 77.8 MB
ENCFF081YQX.bigWig bigWig (minus strand signal of all reads) 68.8 MB
ENCFF096HQA.bigWig bigWig (plus strand signal of all reads) 82.4 MB
ENCFF098BJR.bigWig bigWig (minus strand signal of unique reads) 78.6 MB
ENCFF100UHR.bigWig bigWig (plus strand signal of all reads) 89.0 MB
ENCFF133YFJ.bam bam (alignments) 4.1 GB
ENCFF135FBF.tar tar (differential splicing quantifications) 15.0 MB
ENCFF147TWF.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF152QBK.bigWig bigWig (minus strand signal of all reads) 79.5 MB
ENCFF155PNM.bigWig bigWig (plus strand signal of all reads) 88.1 MB
ENCFF177YUR.tsv tsv (transcript quantifications) 27.4 MB
ENCFF188FNK.bam bam (transcriptome alignments) 6.5 GB
ENCFF203AOU.bam bam (transcriptome alignments) 5.1 GB
ENCFF233NGB.bigWig bigWig (plus strand signal of unique reads) 73.1 MB
ENCFF259WLS.bam bam (alignments) 4.2 GB
ENCFF260WQP.bam bam (transcriptome alignments) 5.7 GB
ENCFF272MLI.fastq fastq (reads) 2.5 GB
ENCFF301SZI.tsv tsv (gene quantifications) 10.4 MB
ENCFF302TNN.tar tar (differential splicing quantifications) 3.1 MB
ENCFF304ZFS.bigWig bigWig (plus strand signal of unique reads) 63.7 MB
ENCFF308IZU.bigWig bigWig (minus strand signal of unique reads) 68.0 MB
ENCFF311IXG.bigWig bigWig (minus strand signal of unique reads) 68.3 MB
ENCFF319OCD.bigWig bigWig (plus strand signal of all reads) 78.0 MB
ENCFF333MPM.bam bam (alignments) 3.0 GB
ENCFF378DIL.bigWig bigWig (plus strand signal of unique reads) 81.3 MB
ENCFF415CZS.tsv tsv (differential expression quantifications) 4.3 MB
ENCFF426RDN.bigWig bigWig (minus strand signal of all reads) 76.3 MB
ENCFF437KAQ.bam bam (transcriptome alignments) 5.0 GB
ENCFF455QMU.bam bam (alignments) 3.7 GB
ENCFF457GXY.bam bam (alignments) 3.3 GB
ENCFF459DBE.bigWig bigWig (plus strand signal of all reads) 68.2 MB
ENCFF465ZHB.tsv tsv (gene quantifications) 9.1 MB
ENCFF479YIV.bigWig bigWig (minus strand signal of unique reads) 79.2 MB
ENCFF495NVM.bam bam (alignments) 3.1 GB
ENCFF503GXO.fastq fastq (reads) 2.3 GB
ENCFF505CZF.bigWig bigWig (plus strand signal of all reads) 71.7 MB
ENCFF522GQI.bam bam (transcriptome alignments) 5.8 GB
ENCFF527XUJ.bigWig bigWig (plus strand signal of all reads) 77.2 MB
ENCFF537QKL.bigWig bigWig (minus strand signal of unique reads) 74.6 MB
ENCFF540NHF.bigWig bigWig (minus strand signal of unique reads) 71.0 MB
ENCFF549PVY.bigWig bigWig (plus strand signal of unique reads) 70.0 MB
ENCFF551NLO.tsv tsv (transcript quantifications) 29.8 MB
ENCFF560KZC.bigWig bigWig (plus strand signal of unique reads) 69.7 MB
ENCFF563OJW.bigWig bigWig (plus strand signal of unique reads) 66.7 MB
ENCFF570XXE.bigWig bigWig (minus strand signal of all reads) 86.7 MB
ENCFF579FLS.tsv tsv (gene quantifications) 9.5 MB
ENCFF594KCW.bam bam (alignments) 3.3 GB
ENCFF597WIV.bam bam (alignments) 4.2 GB
ENCFF600VKL.bam bam (alignments) 3.8 GB
ENCFF609FKO.bigWig bigWig (minus strand signal of unique reads) 79.1 MB
ENCFF638SZX.bigWig bigWig (plus strand signal of unique reads) 77.0 MB
ENCFF643MWS.bigWig bigWig (plus strand signal of unique reads) 65.7 MB
ENCFF645WGL.tsv tsv (transcript quantifications) 25.3 MB
ENCFF647RCL.bigWig bigWig (plus strand signal of unique reads) 80.9 MB
ENCFF648BWM.bigWig bigWig (plus strand signal of all reads) 78.0 MB
ENCFF649SNE.tsv tsv (transcript quantifications) 27.3 MB
ENCFF655LYC.tsv tsv (transcript quantifications) 29.8 MB
ENCFF659VJM.bigWig bigWig (minus strand signal of all reads) 87.5 MB
ENCFF666GHS.bigWig bigWig (minus strand signal of all reads) 76.7 MB
ENCFF676WIT.tsv tsv (gene quantifications) 9.1 MB
ENCFF677ZMU.fastq fastq (reads) 2.2 GB
ENCFF697MAC.bam bam (alignments) 3.0 GB
ENCFF698AJG.bigWig bigWig (minus strand signal of unique reads) 62.0 MB
ENCFF702KJW.bigWig bigWig (minus strand signal of all reads) 80.8 MB
ENCFF705MIM.tsv tsv (transcript quantifications) 25.0 MB
ENCFF714YZN.bigWig bigWig (minus strand signal of unique reads) 75.0 MB
ENCFF727IFQ.tsv tsv (transcript quantifications) 25.3 MB
ENCFF749AZU.bam bam (alignments) 3.8 GB
ENCFF750IUN.bigWig bigWig (minus strand signal of all reads) 70.3 MB
ENCFF756WMD.bigWig bigWig (minus strand signal of unique reads) 68.3 MB
ENCFF769CFH.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF785LBM.bam bam (alignments) 3.4 GB
ENCFF791KKG.bigWig bigWig (minus strand signal of all reads) 76.1 MB
ENCFF805LNE.bigWig bigWig (minus strand signal of all reads) 76.7 MB
ENCFF812UYP.bigWig bigWig (plus strand signal of unique reads) 76.8 MB
ENCFF824CXQ.fastq fastq (reads) 2.5 GB
ENCFF833BKX.bigWig bigWig (plus strand signal of unique reads) 70.1 MB
ENCFF860QDU.bigWig bigWig (plus strand signal of unique reads) 81.4 MB
ENCFF860SXY.bigWig bigWig (minus strand signal of unique reads) 64.9 MB
ENCFF882BSB.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF912UQG.tar tar (differential splicing quantifications) 3.7 MB
ENCFF947TUI.bigWig bigWig (minus strand signal of unique reads) 64.1 MB
ENCFF964IJK.bam bam (transcriptome alignments) 5.7 GB
ENCFF964TLH.bigWig bigWig (minus strand signal of all reads) 87.5 MB
ENCFF981AUE.bigWig bigWig (plus strand signal of all reads) 80.9 MB
ENCFF981QEV.bigWig bigWig (minus strand signal of all reads) 67.1 MB
ENCFF994HTF.bigWig bigWig (plus strand signal of all reads) 70.0 MB
ENCSR974RYS ENCSR · via encode_api

RNA-seq on K562 cells treated with a CRISPR gRNA against ZNF800. (ZNF800-BGKcLV06)

Homo sapiens

92 data files
FileTypeSize
ENCFF003MCW.bigWig bigWig (minus strand signal of all reads) 61.1 MB
ENCFF010MWP.tsv tsv (gene quantifications) 9.4 MB
ENCFF033JIC.bigWig bigWig (plus strand signal of all reads) 97.8 MB
ENCFF070PKX.bam bam (alignments) 4.6 GB
ENCFF075VEY.bigWig bigWig (plus strand signal of unique reads) 59.8 MB
ENCFF094MAF.bigWig bigWig (minus strand signal of all reads) 94.3 MB
ENCFF097CWO.bigWig bigWig (minus strand signal of all reads) 88.3 MB
ENCFF108EGO.bigWig bigWig (minus strand signal of unique reads) 63.1 MB
ENCFF148ENL.bam bam (alignments) 3.6 GB
ENCFF158PIV.fastq fastq (reads) 2.7 GB
ENCFF160HZY.bigWig bigWig (plus strand signal of all reads) 95.6 MB
ENCFF160XVD.bam bam (alignments) 2.8 GB
ENCFF174AEP.bigWig bigWig (plus strand signal of all reads) 86.7 MB
ENCFF193XLA.fastq fastq (reads) 1.6 GB
ENCFF199BHE.tsv tsv (gene quantifications) 9.1 MB
ENCFF199KWN.bam bam (transcriptome alignments) 3.7 GB
ENCFF201PRY.bigWig bigWig (minus strand signal of all reads) 72.0 MB
ENCFF220VQD.bigWig bigWig (minus strand signal of all reads) 96.6 MB
ENCFF241DRM.bigWig bigWig (plus strand signal of unique reads) 87.0 MB
ENCFF251DMN.tsv tsv (differential expression quantifications) 2.7 MB
ENCFF256EEJ.bam bam (transcriptome alignments) 3.6 GB
ENCFF256FYN.bigWig bigWig (minus strand signal of all reads) 96.6 MB
ENCFF275FLP.tar tar (differential splicing quantifications) 14.8 MB
ENCFF316AMS.bigWig bigWig (minus strand signal of all reads) 70.9 MB
ENCFF325UNV.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF330DQF.bigWig bigWig (minus strand signal of all reads) 84.3 MB
ENCFF368RYI.tsv tsv (transcript quantifications) 29.8 MB
ENCFF381FKY.bigWig bigWig (plus strand signal of unique reads) 64.6 MB
ENCFF385JAR.bam bam (alignments) 3.7 GB
ENCFF413MAK.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF426GFK.bam bam (transcriptome alignments) 6.1 GB
ENCFF428DFK.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF464VNY.bigWig bigWig (plus strand signal of all reads) 72.9 MB
ENCFF466SHE.bigWig bigWig (minus strand signal of unique reads) 62.2 MB
ENCFF477SYX.bam bam (alignments) 2.2 GB
ENCFF480HVP.bigWig bigWig (plus strand signal of unique reads) 57.0 MB
ENCFF481QUR.bam bam (alignments) 4.6 GB
ENCFF492NMD.tsv tsv (transcript quantifications) 27.2 MB
ENCFF496MJM.tsv tsv (transcript quantifications) 27.3 MB
ENCFF539EDN.tsv tsv (gene quantifications) 10.4 MB
ENCFF545QHE.bigWig bigWig (plus strand signal of unique reads) 82.4 MB
ENCFF555RYJ.tsv tsv (transcript quantifications) 29.9 MB
ENCFF576WIQ.bigWig bigWig (minus strand signal of unique reads) 59.6 MB
ENCFF578HKP.bigWig bigWig (plus strand signal of unique reads) 81.5 MB
ENCFF578NKC.tsv tsv (transcript quantifications) 25.4 MB
ENCFF582OBD.bigWig bigWig (plus strand signal of unique reads) 63.8 MB
ENCFF583JEX.bigWig bigWig (minus strand signal of unique reads) 80.2 MB
ENCFF585TZC.tsv tsv (transcript quantifications) 24.9 MB
ENCFF596ETK.bam bam (alignments) 2.7 GB
ENCFF596RNI.bigWig bigWig (plus strand signal of unique reads) 61.2 MB
ENCFF609PKA.bigWig bigWig (minus strand signal of all reads) 71.9 MB
ENCFF614KIK.tsv tsv (differential expression quantifications) 4.2 MB
ENCFF617HOC.bigWig bigWig (minus strand signal of unique reads) 83.9 MB
ENCFF624VLI.bigWig bigWig (plus strand signal of all reads) 89.9 MB
ENCFF630APT.bam bam (alignments) 2.8 GB
ENCFF645KMU.bigWig bigWig (plus strand signal of all reads) 97.8 MB
ENCFF652HDU.bigWig bigWig (plus strand signal of all reads) 62.3 MB
ENCFF656INY.tsv tsv (transcript quantifications) 25.3 MB
ENCFF661HDO.bigWig bigWig (minus strand signal of all reads) 63.3 MB
ENCFF683MTM.bigWig bigWig (minus strand signal of unique reads) 84.8 MB
ENCFF683POL.bigWig bigWig (plus strand signal of unique reads) 87.2 MB
ENCFF685XEB.tar tar (differential splicing quantifications) 3.5 MB
ENCFF699EDF.bigWig bigWig (plus strand signal of unique reads) 78.1 MB
ENCFF700VXB.fastq fastq (reads) 1.6 GB
ENCFF715BAO.bam bam (alignments) 4.5 GB
ENCFF733UJV.bigWig bigWig (minus strand signal of unique reads) 75.9 MB
ENCFF738ESH.fastq fastq (reads) 2.7 GB
ENCFF768HFI.bigWig bigWig (plus strand signal of all reads) 66.5 MB
ENCFF768NVI.bigWig bigWig (minus strand signal of unique reads) 79.7 MB
ENCFF776CMX.tsv tsv (gene quantifications) 9.5 MB
ENCFF787BCI.bigWig bigWig (minus strand signal of all reads) 65.4 MB
ENCFF788ZJL.bigWig bigWig (plus strand signal of unique reads) 64.2 MB
ENCFF794KQF.bigWig bigWig (minus strand signal of unique reads) 58.5 MB
ENCFF796QBE.bam bam (alignments) 2.2 GB
ENCFF811XNC.bam bam (transcriptome alignments) 7.0 GB
ENCFF836XFT.bam bam (transcriptome alignments) 4.2 GB
ENCFF871MQZ.bigWig bigWig (plus strand signal of all reads) 85.8 MB
ENCFF909AYW.tsv tsv (gene quantifications) 10.4 MB
ENCFF911GUK.bigWig bigWig (minus strand signal of all reads) 85.6 MB
ENCFF919KPG.bigWig bigWig (minus strand signal of unique reads) 62.7 MB
ENCFF921IFF.bam bam (alignments) 2.2 GB
ENCFF934QGI.bigWig bigWig (plus strand signal of unique reads) 85.9 MB
ENCFF937URE.tar tar (differential splicing quantifications) 4.2 MB
ENCFF953UHJ.bigWig bigWig (plus strand signal of all reads) 71.9 MB
ENCFF955DBJ.bam bam (transcriptome alignments) 6.1 GB
ENCFF960TFF.tsv tsv (gene quantifications) 9.1 MB
ENCFF965FBB.bigWig bigWig (plus strand signal of all reads) 64.1 MB
ENCFF975HFK.bigWig bigWig (minus strand signal of unique reads) 55.5 MB
ENCFF983DBM.tsv tsv (transcript quantifications) 24.9 MB
ENCFF988QHG.bam bam (alignments) 3.6 GB
ENCFF989NCX.bigWig bigWig (plus strand signal of all reads) 72.8 MB
ENCFF993LXM.bigWig bigWig (minus strand signal of unique reads) 85.2 MB
ENCSR103NNB ENCSR · via encode_api

RNA-seq on K562 cells treated with a CRISPR gRNA against SDAD1. (SDAD1-BGKcLV06)

Homo sapiens

92 data files
FileTypeSize
ENCFF013DRF.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF049FJJ.fastq fastq (reads) 1.7 GB
ENCFF050IWX.bam bam (alignments) 2.5 GB
ENCFF052XTU.bigWig bigWig (minus strand signal of unique reads) 67.0 MB
ENCFF054FDE.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF056BCC.fastq fastq (reads) 1.8 GB
ENCFF074ZJP.tsv tsv (differential expression quantifications) 4.2 MB
ENCFF093AAG.bigWig bigWig (minus strand signal of all reads) 77.5 MB
ENCFF106VIY.tsv tsv (transcript quantifications) 25.3 MB
ENCFF116HJI.bigWig bigWig (plus strand signal of unique reads) 68.4 MB
ENCFF141PXE.bigWig bigWig (plus strand signal of unique reads) 65.0 MB
ENCFF143IXD.bigWig bigWig (minus strand signal of unique reads) 60.4 MB
ENCFF143SUI.bigWig bigWig (minus strand signal of all reads) 57.8 MB
ENCFF149YCB.bigWig bigWig (minus strand signal of all reads) 70.1 MB
ENCFF201DID.fastq fastq (reads) 1.7 GB
ENCFF207PWU.tsv tsv (gene quantifications) 9.1 MB
ENCFF259MLT.bigWig bigWig (plus strand signal of unique reads) 57.6 MB
ENCFF266SAL.bigWig bigWig (minus strand signal of unique reads) 56.3 MB
ENCFF290KPI.tsv tsv (gene quantifications) 10.4 MB
ENCFF316FUH.bigWig bigWig (plus strand signal of all reads) 69.5 MB
ENCFF324CUB.tsv tsv (gene quantifications) 9.4 MB
ENCFF329AXY.bigWig bigWig (plus strand signal of all reads) 78.4 MB
ENCFF330ERH.bigWig bigWig (plus strand signal of all reads) 62.8 MB
ENCFF337GCK.tsv tsv (differential expression quantifications) 1.8 MB
ENCFF339ZUY.bigWig bigWig (minus strand signal of all reads) 70.3 MB
ENCFF341OIS.bigWig bigWig (plus strand signal of unique reads) 65.0 MB
ENCFF361MLL.tsv tsv (transcript quantifications) 27.3 MB
ENCFF401QYP.bigWig bigWig (minus strand signal of all reads) 77.5 MB
ENCFF405FLV.bigWig bigWig (plus strand signal of unique reads) 57.6 MB
ENCFF423OXV.bigWig bigWig (minus strand signal of all reads) 68.2 MB
ENCFF426GMY.bam bam (alignments) 2.3 GB
ENCFF461ZKQ.tsv tsv (differential expression quantifications) 2.8 MB
ENCFF466EJP.bam bam (alignments) 2.9 GB
ENCFF467MVA.bam bam (alignments) 2.3 GB
ENCFF480ERQ.bam bam (transcriptome alignments) 3.7 GB
ENCFF499LKG.tar tar (differential splicing quantifications) 3.9 MB
ENCFF507WKX.bam bam (alignments) 3.0 GB
ENCFF515IMP.bigWig bigWig (minus strand signal of unique reads) 67.6 MB
ENCFF529GSH.bigWig bigWig (minus strand signal of unique reads) 60.3 MB
ENCFF538YTG.bigWig bigWig (plus strand signal of all reads) 61.2 MB
ENCFF556LYQ.bigWig bigWig (plus strand signal of all reads) 58.9 MB
ENCFF560PUY.tar tar (differential splicing quantifications) 3.3 MB
ENCFF584ETG.bigWig bigWig (minus strand signal of unique reads) 67.7 MB
ENCFF602AAC.bigWig bigWig (plus strand signal of all reads) 78.4 MB
ENCFF660ANX.bigWig bigWig (plus strand signal of all reads) 71.0 MB
ENCFF662HAP.bam bam (alignments) 3.0 GB
ENCFF662OIU.tsv tsv (transcript quantifications) 27.3 MB
ENCFF676ERY.bigWig bigWig (minus strand signal of all reads) 60.4 MB
ENCFF677VOJ.bam bam (alignments) 2.5 GB
ENCFF695BJS.bam bam (transcriptome alignments) 4.2 GB
ENCFF702OEE.bigWig bigWig (plus strand signal of all reads) 70.9 MB
ENCFF704THN.bigWig bigWig (plus strand signal of all reads) 67.4 MB
ENCFF708RAJ.bam bam (alignments) 3.0 GB
ENCFF712OZA.tsv tsv (transcript quantifications) 29.8 MB
ENCFF713CXV.bigWig bigWig (plus strand signal of all reads) 69.1 MB
ENCFF716TYK.tsv tsv (gene quantifications) 9.4 MB
ENCFF724KBF.bigWig bigWig (plus strand signal of unique reads) 61.8 MB
ENCFF725KUC.bigWig bigWig (minus strand signal of unique reads) 52.4 MB
ENCFF726SSU.bigWig bigWig (minus strand signal of all reads) 68.8 MB
ENCFF730SZM.tsv tsv (transcript quantifications) 29.8 MB
ENCFF732IGQ.bigWig bigWig (minus strand signal of all reads) 70.0 MB
ENCFF732YVR.tsv tsv (transcript quantifications) 25.3 MB
ENCFF744AHP.bigWig bigWig (plus strand signal of unique reads) 63.0 MB
ENCFF744BNW.bigWig bigWig (minus strand signal of unique reads) 60.0 MB
ENCFF755AGW.bigWig bigWig (minus strand signal of unique reads) 60.3 MB
ENCFF759KHU.tsv tsv (gene quantifications) 10.4 MB
ENCFF780SFQ.bigWig bigWig (minus strand signal of unique reads) 63.4 MB
ENCFF791AET.bam bam (transcriptome alignments) 4.3 GB
ENCFF795ZXD.bigWig bigWig (minus strand signal of all reads) 76.4 MB
ENCFF804ISR.tsv tsv (gene quantifications) 9.1 MB
ENCFF808PRQ.bigWig bigWig (minus strand signal of unique reads) 56.1 MB
ENCFF828RJB.fastq fastq (reads) 1.7 GB
ENCFF837BZY.bam bam (transcriptome alignments) 3.7 GB
ENCFF841RHD.bam bam (alignments) 2.3 GB
ENCFF843YAE.bigWig bigWig (plus strand signal of unique reads) 69.2 MB
ENCFF862BBJ.tsv tsv (transcript quantifications) 24.9 MB
ENCFF862VJC.bam bam (transcriptome alignments) 3.7 GB
ENCFF872HDU.bigWig bigWig (minus strand signal of all reads) 61.6 MB
ENCFF880HRR.tsv tsv (transcript quantifications) 24.9 MB
ENCFF901HSG.bam bam (alignments) 2.9 GB
ENCFF904QSV.bigWig bigWig (minus strand signal of unique reads) 63.8 MB
ENCFF916BEI.bigWig bigWig (plus strand signal of unique reads) 61.3 MB
ENCFF923GEV.bigWig bigWig (minus strand signal of all reads) 66.3 MB
ENCFF930KJQ.bam bam (alignments) 2.8 GB
ENCFF930NKU.bigWig bigWig (plus strand signal of unique reads) 61.9 MB
ENCFF934WEW.bigWig bigWig (plus strand signal of all reads) 71.4 MB
ENCFF941WAK.bigWig bigWig (plus strand signal of all reads) 77.3 MB
ENCFF972KPD.bam bam (transcriptome alignments) 3.7 GB
ENCFF972YFM.bigWig bigWig (plus strand signal of unique reads) 69.3 MB
ENCFF978PHH.bam bam (alignments) 2.5 GB
ENCFF985QNA.tar tar (differential splicing quantifications) 13.9 MB
ENCFF988IZE.bigWig bigWig (plus strand signal of unique reads) 53.9 MB
ENCSR853AOV ENCSR · via encode_api

Control CRISPR gRNA against no target in HepG2 cells followed by RNA-seq. (NT-BGHcLV05-B)

Homo sapiens

84 data files
FileTypeSize
ENCFF007GBR.tsv tsv (transcript quantifications) 24.9 MB
ENCFF027EQB.bigWig bigWig (minus strand signal of all reads) 97.8 MB
ENCFF030GVE.bam bam (alignments) 6.2 GB
ENCFF034ENC.bigWig bigWig (plus strand signal of all reads) 110.0 MB
ENCFF037BUA.tsv tsv (transcript quantifications) 25.4 MB
ENCFF045YYZ.bam bam (transcriptome alignments) 12.9 GB
ENCFF060DOP.bigWig bigWig (minus strand signal of unique reads) 91.3 MB
ENCFF070YEL.bam bam (alignments) 2.0 GB
ENCFF074PYI.tsv tsv (gene quantifications) 9.1 MB
ENCFF075ELO.bigWig bigWig (plus strand signal of all reads) 50.6 MB
ENCFF098ACO.bigWig bigWig (minus strand signal of unique reads) 49.2 MB
ENCFF100PAF.bigWig bigWig (plus strand signal of all reads) 100.5 MB
ENCFF112HRB.bigWig bigWig (plus strand signal of unique reads) 93.3 MB
ENCFF127KIN.tsv tsv (transcript quantifications) 27.2 MB
ENCFF128JCO.bigWig bigWig (plus strand signal of unique reads) 91.8 MB
ENCFF138UWZ.bigWig bigWig (plus strand signal of unique reads) 98.0 MB
ENCFF142DII.bigWig bigWig (minus strand signal of unique reads) 47.3 MB
ENCFF151ARE.bigWig bigWig (minus strand signal of unique reads) 49.1 MB
ENCFF178TQB.tsv tsv (transcript quantifications) 29.9 MB
ENCFF194BOZ.bigWig bigWig (minus strand signal of unique reads) 95.9 MB
ENCFF196FFW.bigWig bigWig (minus strand signal of all reads) 54.6 MB
ENCFF208USC.bam bam (transcriptome alignments) 11.2 GB
ENCFF211IPO.bigWig bigWig (minus strand signal of all reads) 106.7 MB
ENCFF224AVH.fastq fastq (reads) 4.8 GB
ENCFF225KCL.bam bam (alignments) 2.0 GB
ENCFF258CQT.bam bam (alignments) 6.3 GB
ENCFF261FAL.bigWig bigWig (minus strand signal of all reads) 98.9 MB
ENCFF276ZQL.bigWig bigWig (minus strand signal of all reads) 55.0 MB
ENCFF281BMH.bigWig bigWig (minus strand signal of all reads) 97.6 MB
ENCFF296GOG.bigWig bigWig (plus strand signal of unique reads) 50.6 MB
ENCFF299GIU.bam bam (transcriptome alignments) 3.3 GB
ENCFF316GUP.bigWig bigWig (plus strand signal of all reads) 55.8 MB
ENCFF337RKF.bigWig bigWig (plus strand signal of unique reads) 50.3 MB
ENCFF339OIN.tsv tsv (gene quantifications) 10.4 MB
ENCFF357OCE.bigWig bigWig (minus strand signal of unique reads) 44.0 MB
ENCFF379EYH.bam bam (alignments) 7.8 GB
ENCFF380LHO.bigWig bigWig (plus strand signal of all reads) 48.0 MB
ENCFF399MHX.bigWig bigWig (plus strand signal of unique reads) 47.9 MB
ENCFF415OMM.bigWig bigWig (minus strand signal of all reads) 49.9 MB
ENCFF425ESQ.bam bam (alignments) 1.6 GB
ENCFF438ELI.bigWig bigWig (minus strand signal of unique reads) 96.0 MB
ENCFF443NMP.bigWig bigWig (plus strand signal of all reads) 99.2 MB
ENCFF449ORK.bigWig bigWig (minus strand signal of unique reads) 47.0 MB
ENCFF474EHX.bigWig bigWig (minus strand signal of all reads) 108.5 MB
ENCFF497PBD.bigWig bigWig (minus strand signal of unique reads) 96.9 MB
ENCFF504QUD.bam bam (alignments) 6.2 GB
ENCFF506OPN.bam bam (alignments) 7.8 GB
ENCFF515VJC.bigWig bigWig (plus strand signal of unique reads) 98.1 MB
ENCFF518RLF.bigWig bigWig (plus strand signal of unique reads) 94.1 MB
ENCFF541TIT.bam bam (transcriptome alignments) 2.9 GB
ENCFF559ZHD.fastq fastq (reads) 1.2 GB
ENCFF580NGV.bigWig bigWig (minus strand signal of unique reads) 49.5 MB
ENCFF587PVV.bigWig bigWig (plus strand signal of unique reads) 99.2 MB
ENCFF594DNM.tsv tsv (transcript quantifications) 25.0 MB
ENCFF598DAS.tsv tsv (gene quantifications) 9.5 MB
ENCFF610PAO.tsv tsv (transcript quantifications) 25.3 MB
ENCFF618BXB.bigWig bigWig (minus strand signal of unique reads) 89.8 MB
ENCFF627DVE.bigWig bigWig (plus strand signal of all reads) 55.2 MB
ENCFF633BWE.bigWig bigWig (minus strand signal of all reads) 47.4 MB
ENCFF639KOJ.tsv tsv (gene quantifications) 9.1 MB
ENCFF671RFH.bam bam (transcriptome alignments) 2.9 GB
ENCFF683KQQ.fastq fastq (reads) 4.8 GB
ENCFF740FGN.bigWig bigWig (plus strand signal of all reads) 55.8 MB
ENCFF746JKN.bigWig bigWig (plus strand signal of unique reads) 44.9 MB
ENCFF755URY.bam bam (alignments) 2.0 GB
ENCFF767FAV.bigWig bigWig (plus strand signal of unique reads) 48.3 MB
ENCFF780GAM.bigWig bigWig (minus strand signal of all reads) 55.0 MB
ENCFF784BBJ.fastq fastq (reads) 1.2 GB
ENCFF786AJY.tsv tsv (transcript quantifications) 29.8 MB
ENCFF813YZK.bam bam (alignments) 1.6 GB
ENCFF842WGN.bam bam (alignments) 7.6 GB
ENCFF850XDF.bam bam (transcriptome alignments) 11.2 GB
ENCFF854RLC.tsv tsv (gene quantifications) 9.4 MB
ENCFF875WTT.tsv tsv (gene quantifications) 10.4 MB
ENCFF881LZE.tsv tsv (transcript quantifications) 27.4 MB
ENCFF887GMA.bigWig bigWig (minus strand signal of all reads) 108.5 MB
ENCFF893UGL.bigWig bigWig (minus strand signal of unique reads) 91.9 MB
ENCFF933NQV.bigWig bigWig (plus strand signal of all reads) 51.7 MB
ENCFF955OFQ.bigWig bigWig (minus strand signal of all reads) 50.9 MB
ENCFF965BDY.bigWig bigWig (plus strand signal of all reads) 110.0 MB
ENCFF979IXJ.bigWig bigWig (plus strand signal of all reads) 99.0 MB
ENCFF981ZTA.bigWig bigWig (plus strand signal of unique reads) 50.2 MB
ENCFF985AII.bigWig bigWig (plus strand signal of all reads) 108.0 MB
ENCFF996LFJ.bam bam (alignments) 1.6 GB
ENCSR024FOF ENCSR · via encode_api

Control shRNA against no target in K562 cells followed by RNA-seq. (NT-BGKLV38-B)

Homo sapiens

84 data files
FileTypeSize
ENCFF003BQW.bigWig bigWig (minus strand signal of unique reads) 88.0 MB
ENCFF011XQK.bigWig bigWig (minus strand signal of all reads) 94.8 MB
ENCFF015MCD.bam bam (alignments) 3.5 GB
ENCFF017KHC.bam bam (transcriptome alignments) 6.6 GB
ENCFF019DDE.bigWig bigWig (plus strand signal of all reads) 92.6 MB
ENCFF020ICE.bigWig bigWig (minus strand signal of unique reads) 92.0 MB
ENCFF027QQM.tsv tsv (transcript quantifications) 25.3 MB
ENCFF055GGL.tsv tsv (transcript quantifications) 24.9 MB
ENCFF055RAU.bigWig bigWig (plus strand signal of unique reads) 90.1 MB
ENCFF076OKU.bam bam (alignments) 4.4 GB
ENCFF115NUW.tsv tsv (transcript quantifications) 29.9 MB
ENCFF132KDI.bigWig bigWig (minus strand signal of all reads) 97.6 MB
ENCFF140KLN.bigWig bigWig (plus strand signal of all reads) 92.7 MB
ENCFF144VKE.bigWig bigWig (minus strand signal of unique reads) 82.5 MB
ENCFF145FDR.bigWig bigWig (plus strand signal of all reads) 98.9 MB
ENCFF167ALQ.bam bam (transcriptome alignments) 6.7 GB
ENCFF174XXK.bigWig bigWig (minus strand signal of unique reads) 77.5 MB
ENCFF186JTH.bigWig bigWig (minus strand signal of all reads) 85.4 MB
ENCFF186VSF.bigWig bigWig (minus strand signal of unique reads) 87.7 MB
ENCFF196UTD.bigWig bigWig (minus strand signal of all reads) 104.9 MB
ENCFF198IIE.bigWig bigWig (plus strand signal of all reads) 96.4 MB
ENCFF210SXU.tsv tsv (transcript quantifications) 25.4 MB
ENCFF238HVQ.bigWig bigWig (minus strand signal of all reads) 100.0 MB
ENCFF241PZK.bigWig bigWig (plus strand signal of all reads) 101.3 MB
ENCFF245OBU.bigWig bigWig (minus strand signal of unique reads) 83.1 MB
ENCFF272IJM.tsv tsv (transcript quantifications) 29.9 MB
ENCFF273TZD.bigWig bigWig (plus strand signal of unique reads) 90.1 MB
ENCFF282POJ.bigWig bigWig (minus strand signal of unique reads) 85.4 MB
ENCFF289AUW.bigWig bigWig (minus strand signal of all reads) 91.3 MB
ENCFF291JNA.bigWig bigWig (plus strand signal of unique reads) 90.2 MB
ENCFF291XZD.bigWig bigWig (minus strand signal of all reads) 100.0 MB
ENCFF306HNI.bam bam (alignments) 3.6 GB
ENCFF320WKA.bigWig bigWig (plus strand signal of all reads) 92.9 MB
ENCFF337FAI.bam bam (transcriptome alignments) 7.7 GB
ENCFF337HON.bam bam (alignments) 4.2 GB
ENCFF352IGK.bigWig bigWig (plus strand signal of unique reads) 84.4 MB
ENCFF378OYV.bam bam (alignments) 3.5 GB
ENCFF398MGV.bigWig bigWig (plus strand signal of unique reads) 94.0 MB
ENCFF432DYU.bam bam (alignments) 4.2 GB
ENCFF439VYF.fastq fastq (reads) 2.6 GB
ENCFF452CVR.bigWig bigWig (plus strand signal of unique reads) 85.4 MB
ENCFF463BAW.bigWig bigWig (plus strand signal of unique reads) 88.7 MB
ENCFF496RQR.bigWig bigWig (minus strand signal of unique reads) 87.9 MB
ENCFF496TWM.tsv tsv (gene quantifications) 10.4 MB
ENCFF526EHG.bigWig bigWig (plus strand signal of all reads) 106.0 MB
ENCFF530HYC.bigWig bigWig (plus strand signal of unique reads) 84.6 MB
ENCFF543TWD.bigWig bigWig (minus strand signal of all reads) 104.9 MB
ENCFF558FVO.bigWig bigWig (minus strand signal of unique reads) 92.5 MB
ENCFF558YYA.tsv tsv (gene quantifications) 9.5 MB
ENCFF587RCX.bigWig bigWig (plus strand signal of unique reads) 94.5 MB
ENCFF608DFM.bam bam (transcriptome alignments) 6.3 GB
ENCFF608ODT.fastq fastq (reads) 3.1 GB
ENCFF609AWT.tsv tsv (transcript quantifications) 24.9 MB
ENCFF610PAE.bigWig bigWig (minus strand signal of all reads) 103.9 MB
ENCFF612XYU.bigWig bigWig (plus strand signal of all reads) 106.1 MB
ENCFF616YIV.bigWig bigWig (plus strand signal of all reads) 90.1 MB
ENCFF619CWZ.bigWig bigWig (minus strand signal of all reads) 91.6 MB
ENCFF628UKA.bam bam (alignments) 4.3 GB
ENCFF630GLI.bigWig bigWig (plus strand signal of all reads) 87.0 MB
ENCFF631KWQ.bigWig bigWig (minus strand signal of all reads) 88.9 MB
ENCFF650PZU.bam bam (alignments) 5.2 GB
ENCFF665NFX.bam bam (transcriptome alignments) 5.5 GB
ENCFF684TVB.tsv tsv (transcript quantifications) 27.4 MB
ENCFF689SMR.fastq fastq (reads) 2.6 GB
ENCFF734BPD.tsv tsv (transcript quantifications) 27.4 MB
ENCFF742YGQ.bigWig bigWig (minus strand signal of unique reads) 82.4 MB
ENCFF747PIZ.tsv tsv (gene quantifications) 10.4 MB
ENCFF753AQU.bam bam (transcriptome alignments) 5.5 GB
ENCFF763AKQ.bigWig bigWig (plus strand signal of all reads) 105.1 MB
ENCFF774WYR.tsv tsv (gene quantifications) 9.1 MB
ENCFF783QUA.fastq fastq (reads) 3.1 GB
ENCFF816TVN.tsv tsv (gene quantifications) 9.5 MB
ENCFF828UHS.bigWig bigWig (minus strand signal of unique reads) 86.5 MB
ENCFF849QFD.bigWig bigWig (plus strand signal of unique reads) 94.3 MB
ENCFF864DDO.bigWig bigWig (plus strand signal of all reads) 101.3 MB
ENCFF894EOF.bam bam (alignments) 5.2 GB
ENCFF895YJO.bam bam (alignments) 5.2 GB
ENCFF906JXB.bigWig bigWig (plus strand signal of unique reads) 79.7 MB
ENCFF909KDX.tsv tsv (gene quantifications) 9.1 MB
ENCFF911SHB.bigWig bigWig (minus strand signal of unique reads) 91.9 MB
ENCFF914ZNI.bam bam (alignments) 4.4 GB
ENCFF930NLA.bigWig bigWig (minus strand signal of all reads) 91.0 MB
ENCFF942SFC.bigWig bigWig (plus strand signal of unique reads) 87.2 MB
ENCFF944ISJ.bam bam (alignments) 4.2 GB
ENCSR696JWA ENCSR · via encode_api

RNA-seq on HepG2 cells treated with an shRNA knockdown against ZC3H8. (ZC3H8-BGHLV37-B)

Homo sapiens

92 data files
FileTypeSize
ENCFF004JRJ.bigWig bigWig (minus strand signal of unique reads) 64.9 MB
ENCFF014KHO.tsv tsv (transcript quantifications) 24.9 MB
ENCFF043LMZ.bam bam (alignments) 2.8 GB
ENCFF047URK.bigWig bigWig (plus strand signal of unique reads) 73.2 MB
ENCFF061NET.bam bam (transcriptome alignments) 4.6 GB
ENCFF062BVW.bigWig bigWig (minus strand signal of all reads) 80.6 MB
ENCFF063QCX.bam bam (alignments) 3.4 GB
ENCFF074OII.bigWig bigWig (plus strand signal of unique reads) 72.4 MB
ENCFF083LPC.tsv tsv (gene quantifications) 10.4 MB
ENCFF092CMV.tsv tsv (differential expression quantifications) 2.0 MB
ENCFF093OKE.bigWig bigWig (minus strand signal of all reads) 76.4 MB
ENCFF100FFS.tsv tsv (gene quantifications) 9.1 MB
ENCFF102THE.bam bam (alignments) 3.4 GB
ENCFF131WCL.bigWig bigWig (plus strand signal of unique reads) 74.3 MB
ENCFF133ZLS.bigWig bigWig (plus strand signal of unique reads) 66.5 MB
ENCFF149WDM.fastq fastq (reads) 2.1 GB
ENCFF151BSR.tsv tsv (transcript quantifications) 29.8 MB
ENCFF163IDA.fastq fastq (reads) 2.1 GB
ENCFF166WKF.bigWig bigWig (plus strand signal of all reads) 75.6 MB
ENCFF167GTL.bigWig bigWig (minus strand signal of unique reads) 72.3 MB
ENCFF180XUI.tsv tsv (gene quantifications) 9.5 MB
ENCFF192XHG.tsv tsv (transcript quantifications) 29.8 MB
ENCFF210CVT.tsv tsv (transcript quantifications) 27.3 MB
ENCFF216CQU.tsv tsv (transcript quantifications) 25.3 MB
ENCFF235VRO.bigWig bigWig (plus strand signal of all reads) 76.1 MB
ENCFF238PFH.bigWig bigWig (minus strand signal of unique reads) 75.0 MB
ENCFF267FYE.bam bam (transcriptome alignments) 4.5 GB
ENCFF267VIY.bigWig bigWig (plus strand signal of unique reads) 74.3 MB
ENCFF274USO.bigWig bigWig (plus strand signal of all reads) 73.6 MB
ENCFF302QIT.bam bam (alignments) 2.7 GB
ENCFF309NRT.bigWig bigWig (plus strand signal of all reads) 74.2 MB
ENCFF314NXK.bigWig bigWig (minus strand signal of all reads) 74.1 MB
ENCFF348TLN.tsv tsv (gene quantifications) 9.5 MB
ENCFF357IFW.bigWig bigWig (plus strand signal of all reads) 85.2 MB
ENCFF359XGK.tsv tsv (transcript quantifications) 25.3 MB
ENCFF369IFK.tsv tsv (transcript quantifications) 24.9 MB
ENCFF397QPW.bigWig bigWig (minus strand signal of all reads) 83.7 MB
ENCFF446FUH.bigWig bigWig (plus strand signal of all reads) 84.2 MB
ENCFF448GQJ.bigWig bigWig (plus strand signal of unique reads) 69.0 MB
ENCFF453IRD.bam bam (alignments) 2.7 GB
ENCFF479PVR.tar tar (differential splicing quantifications) 3.1 MB
ENCFF486AUZ.tsv tsv (transcript quantifications) 27.4 MB
ENCFF503BTZ.bam bam (alignments) 3.5 GB
ENCFF509HDN.bam bam (alignments) 3.5 GB
ENCFF509SRE.tar tar (differential splicing quantifications) 15.2 MB
ENCFF511MDW.bigWig bigWig (minus strand signal of unique reads) 74.9 MB
ENCFF515MWV.bigWig bigWig (plus strand signal of all reads) 71.0 MB
ENCFF548MYZ.bam bam (transcriptome alignments) 4.6 GB
ENCFF567CVG.bigWig bigWig (minus strand signal of unique reads) 72.3 MB
ENCFF585MVT.bigWig bigWig (plus strand signal of all reads) 82.7 MB
ENCFF615MRE.bigWig bigWig (minus strand signal of all reads) 83.0 MB
ENCFF620IJO.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF634OWT.bam bam (alignments) 2.8 GB
ENCFF658CBV.bigWig bigWig (minus strand signal of all reads) 72.8 MB
ENCFF666VJF.bam bam (transcriptome alignments) 4.5 GB
ENCFF690FJJ.bigWig bigWig (plus strand signal of unique reads) 76.0 MB
ENCFF697NGR.tar tar (differential splicing quantifications) 3.7 MB
ENCFF710FQG.tsv tsv (gene quantifications) 10.4 MB
ENCFF713SOH.bam bam (transcriptome alignments) 5.3 GB
ENCFF721XJL.bigWig bigWig (plus strand signal of unique reads) 74.3 MB
ENCFF731IFW.bigWig bigWig (plus strand signal of unique reads) 77.0 MB
ENCFF744PFN.bigWig bigWig (minus strand signal of all reads) 69.8 MB
ENCFF749DQC.bigWig bigWig (plus strand signal of all reads) 85.2 MB
ENCFF760STB.bigWig bigWig (minus strand signal of unique reads) 67.3 MB
ENCFF760YVE.bam bam (alignments) 2.9 GB
ENCFF786ZFR.bigWig bigWig (plus strand signal of unique reads) 70.6 MB
ENCFF811ORW.bigWig bigWig (minus strand signal of all reads) 72.4 MB
ENCFF818NAG.bigWig bigWig (minus strand signal of unique reads) 72.3 MB
ENCFF830ABK.bigWig bigWig (minus strand signal of unique reads) 67.6 MB
ENCFF836UCC.bam bam (transcriptome alignments) 5.2 GB
ENCFF847QNE.bam bam (alignments) 3.3 GB
ENCFF856JRB.bigWig bigWig (plus strand signal of all reads) 77.8 MB
ENCFF857GAD.bam bam (alignments) 2.8 GB
ENCFF866TJI.bigWig bigWig (minus strand signal of all reads) 74.7 MB
ENCFF867FKK.bam bam (alignments) 3.5 GB
ENCFF881XAZ.fastq fastq (reads) 2.0 GB
ENCFF882EAM.bigWig bigWig (minus strand signal of unique reads) 74.0 MB
ENCFF886WEV.bigWig bigWig (plus strand signal of unique reads) 76.9 MB
ENCFF890IUZ.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF910GTV.bigWig bigWig (minus strand signal of unique reads) 68.7 MB
ENCFF910TNK.bigWig bigWig (minus strand signal of all reads) 83.7 MB
ENCFF924AVG.bigWig bigWig (minus strand signal of unique reads) 71.1 MB
ENCFF926KQU.bigWig bigWig (minus strand signal of unique reads) 70.5 MB
ENCFF938RXC.bigWig bigWig (plus strand signal of unique reads) 69.3 MB
ENCFF942LXF.tsv tsv (differential expression quantifications) 2.7 MB
ENCFF962AZE.bigWig bigWig (plus strand signal of all reads) 82.7 MB
ENCFF967KFA.bigWig bigWig (plus strand signal of all reads) 81.8 MB
ENCFF971NRT.tsv tsv (differential expression quantifications) 4.3 MB
ENCFF973CHT.bigWig bigWig (minus strand signal of all reads) 81.2 MB
ENCFF974DQU.bigWig bigWig (minus strand signal of all reads) 81.2 MB
ENCFF993RFY.fastq fastq (reads) 2.0 GB
ENCFF994ZAW.tsv tsv (gene quantifications) 9.1 MB
ENCSR437GYG ENCSR · via encode_api

RNA-seq on HepG2 cells treated with a CRISPR gRNA against AGGF1. (AGGF1-BGHcLV05-B)

Homo sapiens

92 data files
FileTypeSize
ENCFF011BLH.bam bam (alignments); assembly: GRCh38; genome annotation: V24 2.8 GB
ENCFF013DPY.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.2 MB
ENCFF046DBY.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 65.1 MB
ENCFF057UVW.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF068EFW.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 48.7 MB
ENCFF081ZZA.bam bam (alignments); assembly: GRCh38; genome annotation: V24 1.8 GB
ENCFF100FDF.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 68.0 MB
ENCFF102EPI.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 47.6 MB
ENCFF110CEB.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.8 MB
ENCFF111KCP.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 67.2 MB
ENCFF125CRX.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 55.6 MB
ENCFF143BMK.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.4 MB
ENCFF150XKI.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 55.5 MB
ENCFF164UBR.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 60.1 MB
ENCFF168CVX.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.5 MB
ENCFF174YMP.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.8 MB
ENCFF205VOJ.bam bam (alignments); assembly: GRCh38; genome annotation: V24 2.2 GB
ENCFF208URS.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 51.7 MB
ENCFF209KPC.bam bam (alignments); assembly: hg19; genome annotation: V19 2.8 GB
ENCFF214EBA.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 48.2 MB
ENCFF222VUK.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 66.0 MB
ENCFF226VRJ.fastq fastq (reads) 2.2 GB
ENCFF243NXR.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 63.8 MB
ENCFF245GPX.bam bam (alignments); assembly: GRCh38; genome annotation: V29 2.2 GB
ENCFF248IJX.bam bam (alignments); assembly: hg19; genome annotation: V19 2.2 GB
ENCFF253QSU.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 2.9 MB
ENCFF255IXQ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 68.1 MB
ENCFF255XOC.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 48.6 MB
ENCFF259LLW.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 50.5 MB
ENCFF265NOS.bam bam (alignments); assembly: hg19; genome annotation: V19 1.8 GB
ENCFF267IVA.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 64.7 MB
ENCFF291KGL.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF317YVP.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 3.1 GB
ENCFF321ZAQ.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 56.1 MB
ENCFF332OWC.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 74.4 MB
ENCFF337FOE.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 63.3 MB
ENCFF340TGV.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 50.4 MB
ENCFF356FQT.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.9 MB
ENCFF372TUQ.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 3.6 GB
ENCFF373XJR.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 49.4 MB
ENCFF398SOA.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 74.8 MB
ENCFF409NGZ.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 47.8 MB
ENCFF411EAH.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF423RQM.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF443RQD.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 25.0 MB
ENCFF463AUE.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 45.5 MB
ENCFF494IUW.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 75.7 MB
ENCFF497LRO.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF521KJQ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 51.0 MB
ENCFF527GHH.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 5.6 MB
ENCFF533OWZ.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 74.8 MB
ENCFF551UNB.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 55.5 MB
ENCFF556NLI.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 3.1 GB
ENCFF558UTY.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 67.6 MB
ENCFF568NUK.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 12.8 MB
ENCFF575LVR.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 49.3 MB
ENCFF579INI.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 61.3 MB
ENCFF586UMA.bam bam (alignments); assembly: hg19; genome annotation: V19 1.8 GB
ENCFF591VSF.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 66.2 MB
ENCFF610VTX.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 73.6 MB
ENCFF644TFQ.bam bam (alignments); assembly: hg19; genome annotation: V19 2.8 GB
ENCFF658NAS.bam bam (alignments); assembly: hg19; genome annotation: V19 3.4 GB
ENCFF665RPB.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 44.7 MB
ENCFF666YCS.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 66.6 MB
ENCFF668XNU.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 50.0 MB
ENCFF687ZJO.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 75.7 MB
ENCFF695YZL.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 56.1 MB
ENCFF703ZYK.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF713DGU.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 49.9 MB
ENCFF732QPC.fastq fastq (reads) 1.3 GB
ENCFF740PMW.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 5.0 GB
ENCFF742VAE.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 5.8 GB
ENCFF754QFX.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.5 GB
ENCFF773GBZ.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 50.3 MB
ENCFF779HYK.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.9 MB
ENCFF785HQU.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 5.0 GB
ENCFF799MFH.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 56.1 MB
ENCFF799OTO.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 62.6 MB
ENCFF810YEV.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 68.4 MB
ENCFF819IWF.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF828KDR.fastq fastq (reads) 2.1 GB
ENCFF887NBC.fastq fastq (reads) 1.4 GB
ENCFF905JAE.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 46.9 MB
ENCFF935DEE.bam bam (alignments); assembly: GRCh38; genome annotation: V29 3.5 GB
ENCFF935TNW.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 4.1 MB
ENCFF950XMT.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 3.4 MB
ENCFF960GVO.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 65.9 MB
ENCFF971XJN.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 69.3 MB
ENCFF975NYE.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 51.1 MB
ENCFF983GZL.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 67.4 MB
ENCFF989USQ.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF998NHD.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.3 MB
ENCSR952OOP ENCSR · via encode_api

RNA-seq on K562 cells treated with an shRNA knockdown against CKAP4. (CKAP4-BGKLV36-B)

Homo sapiens

92 data files
FileTypeSize
ENCFF003KXY.bam bam (alignments); assembly: GRCh38; genome annotation: V24 6.7 GB
ENCFF013MHC.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 104.1 MB
ENCFF031NBX.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 4.3 MB
ENCFF042KLP.bam bam (alignments); assembly: hg19; genome annotation: V19 5.2 GB
ENCFF043ASL.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.9 MB
ENCFF093HVI.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 108.7 MB
ENCFF122SWM.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 104.2 MB
ENCFF142CGK.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 109.9 MB
ENCFF156DVE.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 101.2 MB
ENCFF174KBN.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF181FWW.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 121.3 MB
ENCFF185ZVL.bam bam (alignments); assembly: hg19; genome annotation: V19 6.6 GB
ENCFF197VNT.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 119.9 MB
ENCFF203PGI.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.0 MB
ENCFF237DCY.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 120.9 MB
ENCFF238NOD.bam bam (alignments); assembly: GRCh38; genome annotation: V29 6.6 GB
ENCFF239MHJ.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF241PSY.fastq fastq (reads) 3.8 GB
ENCFF251CKP.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.5 MB
ENCFF259CEY.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 103.3 MB
ENCFF260NNL.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 95.6 MB
ENCFF279XBJ.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 8.5 GB
ENCFF283QYM.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 106.6 MB
ENCFF294ARE.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.4 MB
ENCFF298SZT.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 100.7 MB
ENCFF308FUM.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 97.9 MB
ENCFF318RPU.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 110.7 MB
ENCFF339ION.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 8.5 GB
ENCFF339WHI.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 9.8 GB
ENCFF340JQE.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 109.8 MB
ENCFF351OGT.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 5.6 MB
ENCFF360QQO.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 113.1 MB
ENCFF368SBH.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 96.6 MB
ENCFF370TCD.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 122.6 MB
ENCFF377AFY.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 25.0 MB
ENCFF401RKK.bam bam (alignments); assembly: hg19; genome annotation: V19 6.5 GB
ENCFF403BXJ.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 99.2 MB
ENCFF414UGQ.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 120.9 MB
ENCFF425FTC.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 105.9 MB
ENCFF433NQQ.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF435KZB.bam bam (alignments); assembly: hg19; genome annotation: V19 5.3 GB
ENCFF445HLE.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 107.6 MB
ENCFF448MSH.fastq fastq (reads) 3.8 GB
ENCFF479BVJ.bam bam (alignments); assembly: GRCh38; genome annotation: V29 6.7 GB
ENCFF502IXX.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 122.6 MB
ENCFF524TVU.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.9 MB
ENCFF545HCF.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 121.3 MB
ENCFF550LQZ.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 119.5 MB
ENCFF556ALT.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.9 MB
ENCFF559MQU.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 107.3 MB
ENCFF574SWA.bam bam (alignments); assembly: hg19; genome annotation: V19 5.3 GB
ENCFF577ABE.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 111.2 MB
ENCFF597GCO.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 99.2 MB
ENCFF610CWD.fastq fastq (reads) 3.9 GB
ENCFF612DAS.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 107.3 MB
ENCFF622AUV.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 105.5 MB
ENCFF627EBI.bam bam (alignments); assembly: GRCh38; genome annotation: V24 6.6 GB
ENCFF634LQY.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 15.8 MB
ENCFF636NCD.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 106.2 MB
ENCFF642IBL.bam bam (alignments); assembly: GRCh38; genome annotation: V24 5.3 GB
ENCFF657FQI.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 107.6 MB
ENCFF674YTB.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 122.4 MB
ENCFF697MCD.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 107.9 MB
ENCFF705NFG.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.4 MB
ENCFF718BUD.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 108.7 MB
ENCFF721QUD.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 99.2 MB
ENCFF756MNS.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 5.3 MB
ENCFF760ZAR.bam bam (alignments); assembly: GRCh38; genome annotation: V24 5.4 GB
ENCFF762CRV.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF781AVN.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 118.4 MB
ENCFF781UWT.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 106.9 MB
ENCFF784AKO.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 98.1 MB
ENCFF784NVU.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 106.7 MB
ENCFF802ZCK.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.5 MB
ENCFF808UTP.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 105.1 MB
ENCFF855JBA.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 8.4 GB
ENCFF857LTQ.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 107.7 MB
ENCFF859BVP.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 101.7 MB
ENCFF898MJO.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.5 MB
ENCFF900ROJ.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 120.9 MB
ENCFF912VPP.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 9.8 GB
ENCFF917GPG.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.5 MB
ENCFF919JWK.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 105.9 MB
ENCFF919SZI.fastq fastq (reads) 3.9 GB
ENCFF920QAB.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF921RZJ.bam bam (alignments); assembly: hg19; genome annotation: V19 5.3 GB
ENCFF923HEF.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.7 MB
ENCFF928NMQ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 108.7 MB
ENCFF939CWO.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 4.4 MB
ENCFF945FPS.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 8.5 GB
ENCFF978ZND.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 119.5 MB
ENCFF985BDX.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 99.9 MB
ENCSR336TYW ENCSR · via encode_api

RNA-seq on K562 cells treated with a CRISPR gRNA against SAFB. (SAFB-BGKcLV06)

Homo sapiens

92 data files
FileTypeSize
ENCFF004BKQ.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF004CFM.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.7 MB
ENCFF027FPC.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF053XLK.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF072VTN.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF073VYN.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 48.2 MB
ENCFF075PVY.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 56.6 MB
ENCFF099AJI.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 54.5 MB
ENCFF118FWR.bam bam (alignments); assembly: hg19; genome annotation: V19 2.1 GB
ENCFF118KGJ.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF149JBZ.bam bam (alignments); assembly: GRCh38; genome annotation: V24 2.7 GB
ENCFF163REY.bam bam (alignments); assembly: hg19; genome annotation: V19 2.6 GB
ENCFF172LJS.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 4.3 MB
ENCFF230HBU.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 67.5 MB
ENCFF242AGM.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 58.5 MB
ENCFF252FRO.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 64.9 MB
ENCFF256RBA.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 58.1 MB
ENCFF258OLY.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 55.5 MB
ENCFF258QIH.bam bam (alignments); assembly: GRCh38; genome annotation: V24 2.1 GB
ENCFF262GAY.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF265ISL.bam bam (alignments); assembly: hg19; genome annotation: V19 2.1 GB
ENCFF266NKU.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF278OSE.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 60.2 MB
ENCFF291WRZ.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 55.6 MB
ENCFF296VVC.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 60.5 MB
ENCFF313AOD.fastq fastq (reads) 1.7 GB
ENCFF314AFX.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 56.0 MB
ENCFF337WVM.bam bam (alignments); assembly: hg19; genome annotation: V19 2.9 GB
ENCFF340YQE.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 63.5 MB
ENCFF345NXA.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 51.3 MB
ENCFF380KRK.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 54.2 MB
ENCFF380LHH.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 55.7 MB
ENCFF385HFA.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 68.0 MB
ENCFF405ZGQ.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 62.7 MB
ENCFF412QEM.bam bam (alignments); assembly: GRCh38; genome annotation: V29 2.9 GB
ENCFF416OGV.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.3 MB
ENCFF418TXJ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 56.9 MB
ENCFF434IRK.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 68.0 MB
ENCFF450XKQ.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 59.4 MB
ENCFF460WNJ.bam bam (alignments); assembly: hg19; genome annotation: V19 2.4 GB
ENCFF484PIX.bam bam (alignments); assembly: GRCh38; genome annotation: V24 2.9 GB
ENCFF484YBG.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 3.6 GB
ENCFF488GMT.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 56.2 MB
ENCFF488VRJ.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF516OAG.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 56.1 MB
ENCFF523EWM.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 64.9 MB
ENCFF529NUS.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 13.7 MB
ENCFF548ITF.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.2 MB
ENCFF562KIM.fastq fastq (reads) 1.6 GB
ENCFF563CEK.bam bam (alignments); assembly: GRCh38; genome annotation: V24 2.4 GB
ENCFF582RCF.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 3.2 MB
ENCFF589IWQ.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.8 MB
ENCFF596QSD.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF644HRV.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 52.3 MB
ENCFF647GQD.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 4.0 GB
ENCFF650WOL.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 62.9 MB
ENCFF660YIE.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 3.5 GB
ENCFF664BWG.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 68.7 MB
ENCFF664KHU.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 51.3 MB
ENCFF682HYW.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 54.2 MB
ENCFF685GLH.bam bam (alignments); assembly: GRCh38; genome annotation: V29 2.7 GB
ENCFF685QJY.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 59.2 MB
ENCFF697PTM.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 3.9 MB
ENCFF698RES.fastq fastq (reads) 1.7 GB
ENCFF719ONP.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 58.3 MB
ENCFF728ION.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 3.5 GB
ENCFF746RHK.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 68.8 MB
ENCFF753AMY.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 52.5 MB
ENCFF771SXA.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 60.0 MB
ENCFF771YKY.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 57.2 MB
ENCFF790MGV.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.9 MB
ENCFF796EMF.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 49.5 MB
ENCFF802XSD.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF806CLZ.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 61.7 MB
ENCFF822THW.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 58.9 MB
ENCFF835FEP.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 66.7 MB
ENCFF838KZB.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 55.5 MB
ENCFF846MMM.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF858ZGV.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 5.5 MB
ENCFF860LBE.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 52.9 MB
ENCFF871XBS.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 3.6 GB
ENCFF884QKC.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 57.4 MB
ENCFF887FUZ.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 64.2 MB
ENCFF908JIW.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 64.2 MB
ENCFF922PRS.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 53.4 MB
ENCFF929VNK.bam bam (alignments); assembly: hg19; genome annotation: V19 2.3 GB
ENCFF940DRS.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF940NNS.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 59.8 MB
ENCFF954LJX.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 58.9 MB
ENCFF954SJX.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 4.1 GB
ENCFF955RLP.fastq fastq (reads) 1.5 GB
ENCFF964DJZ.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 57.2 MB
ENCSR324WIS ENCSR · via encode_api

Control shRNA against no target in K562 cells followed by RNA-seq. (NT-BGKLV36-B)

Homo sapiens

84 data files
FileTypeSize
ENCFF004PDB.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 78.9 MB
ENCFF012VKD.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 85.1 MB
ENCFF033SWZ.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.4 MB
ENCFF057IDM.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 75.7 MB
ENCFF058KYW.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.2 GB
ENCFF088UFF.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 91.6 MB
ENCFF091GAY.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 81.8 MB
ENCFF097ZGU.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 94.1 MB
ENCFF101AKF.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 80.2 MB
ENCFF103VRX.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 80.8 MB
ENCFF124BCK.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 81.6 MB
ENCFF132OJW.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 4.8 GB
ENCFF133OZW.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 82.1 MB
ENCFF136CSS.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 81.3 MB
ENCFF139UML.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 82.7 MB
ENCFF148TIQ.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 4.9 GB
ENCFF156LWU.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF156RHE.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF160NOY.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 91.2 MB
ENCFF174MNI.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 84.9 MB
ENCFF175XAM.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 5.4 GB
ENCFF176RWG.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 77.3 MB
ENCFF179JKL.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.4 MB
ENCFF200XDQ.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF202ESD.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 80.7 MB
ENCFF204ZMU.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.4 GB
ENCFF226XEC.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 5.6 GB
ENCFF241OVM.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 90.7 MB
ENCFF243JCY.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 83.5 MB
ENCFF250DYF.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 78.0 MB
ENCFF251UDN.bam bam (alignments); assembly: hg19; genome annotation: V19 4.2 GB
ENCFF254IJT.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF293NMQ.fastq fastq (reads) 2.2 GB
ENCFF298CHC.bam bam (alignments); assembly: GRCh38; genome annotation: V29 3.9 GB
ENCFF321XJW.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 71.7 MB
ENCFF323QIA.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 78.5 MB
ENCFF341KMM.bam bam (alignments); assembly: hg19; genome annotation: V19 3.4 GB
ENCFF343NRP.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 76.1 MB
ENCFF343UHK.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 79.6 MB
ENCFF350NCQ.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 94.0 MB
ENCFF374IEQ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 83.3 MB
ENCFF378WCG.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 83.1 MB
ENCFF388NKR.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 92.7 MB
ENCFF392PRG.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.9 GB
ENCFF398IZE.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 81.2 MB
ENCFF399APQ.fastq fastq (reads) 2.2 GB
ENCFF416KAZ.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 80.6 MB
ENCFF419OMM.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF430UBF.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 81.3 MB
ENCFF464HHK.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 93.0 MB
ENCFF482KJP.fastq fastq (reads) 2.4 GB
ENCFF483DRU.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.5 MB
ENCFF484ODF.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 80.1 MB
ENCFF489WXQ.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 91.6 MB
ENCFF512WXL.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF518BUH.fastq fastq (reads) 2.4 GB
ENCFF534KMT.bam bam (alignments); assembly: hg19; genome annotation: V19 3.1 GB
ENCFF583PZF.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 93.0 MB
ENCFF590LGK.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 73.5 MB
ENCFF602YMR.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 79.9 MB
ENCFF603LRI.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 92.0 MB
ENCFF656ZYO.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF668KPB.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 91.1 MB
ENCFF668WGI.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF679BEI.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF682UWV.bam bam (alignments); assembly: GRCh38; genome annotation: V29 4.2 GB
ENCFF739RSK.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF770TKX.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 6.2 GB
ENCFF785LWQ.bam bam (alignments); assembly: hg19; genome annotation: V19 3.4 GB
ENCFF795YFQ.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 5.4 GB
ENCFF796UIT.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 78.0 MB
ENCFF803GTP.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 76.3 MB
ENCFF813KBD.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 83.5 MB
ENCFF814AOX.bam bam (alignments); assembly: hg19; genome annotation: V19 3.8 GB
ENCFF826ZYT.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 83.8 MB
ENCFF870ZYS.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 76.9 MB
ENCFF878WXS.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 82.3 MB
ENCFF889CJK.bam bam (alignments); assembly: hg19; genome annotation: V19 3.1 GB
ENCFF916WYG.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 73.4 MB
ENCFF922RPV.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.1 GB
ENCFF932YOW.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.5 MB
ENCFF938DZO.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 82.7 MB
ENCFF943DFK.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 91.9 MB
ENCFF963DUE.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 75.4 MB
ENCSR406SEH ENCSR · via encode_api

RNA-seq on K562 cells treated with a CRISPR gRNA against EXOSC5. (EXOSC5-BGKcLV06)

Homo sapiens

92 data files
FileTypeSize
ENCFF004QBG.tsv tsv (gene quantifications) 9.1 MB
ENCFF006HBC.bigWig bigWig (minus strand signal of all reads) 79.9 MB
ENCFF016HOA.bam bam (alignments) 3.2 GB
ENCFF025CBS.bigWig bigWig (minus strand signal of unique reads) 72.6 MB
ENCFF033LUU.bigWig bigWig (plus strand signal of all reads) 89.7 MB
ENCFF034SXL.bigWig bigWig (plus strand signal of unique reads) 79.7 MB
ENCFF054NOE.bigWig bigWig (minus strand signal of all reads) 88.5 MB
ENCFF076GET.bigWig bigWig (minus strand signal of all reads) 78.6 MB
ENCFF090VWQ.bigWig bigWig (minus strand signal of all reads) 82.6 MB
ENCFF092KWC.tsv tsv (transcript quantifications) 27.4 MB
ENCFF097NCD.bigWig bigWig (plus strand signal of unique reads) 74.4 MB
ENCFF099ZIJ.bigWig bigWig (plus strand signal of unique reads) 78.7 MB
ENCFF101DOO.bam bam (transcriptome alignments) 4.2 GB
ENCFF115HVD.tsv tsv (differential expression quantifications) 4.3 MB
ENCFF119WJZ.bigWig bigWig (plus strand signal of all reads) 95.1 MB
ENCFF121NWA.tsv tsv (transcript quantifications) 27.4 MB
ENCFF124RUI.bigWig bigWig (plus strand signal of unique reads) 77.9 MB
ENCFF140AXV.bigWig bigWig (plus strand signal of all reads) 76.7 MB
ENCFF145SXX.bigWig bigWig (minus strand signal of unique reads) 82.0 MB
ENCFF159BOQ.bigWig bigWig (minus strand signal of unique reads) 78.0 MB
ENCFF161CSN.tsv tsv (transcript quantifications) 29.8 MB
ENCFF175GIP.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF182JUI.tsv tsv (gene quantifications) 9.5 MB
ENCFF194CRB.bigWig bigWig (plus strand signal of unique reads) 78.8 MB
ENCFF207AOM.bam bam (transcriptome alignments) 4.2 GB
ENCFF244LZU.bigWig bigWig (minus strand signal of all reads) 92.5 MB
ENCFF247KWP.bigWig bigWig (plus strand signal of unique reads) 83.0 MB
ENCFF256BDT.bigWig bigWig (minus strand signal of all reads) 88.6 MB
ENCFF257VMU.tsv tsv (transcript quantifications) 25.3 MB
ENCFF283SUC.tsv tsv (gene quantifications) 10.4 MB
ENCFF294FVZ.fastq fastq (reads) 2.0 GB
ENCFF300KAS.bigWig bigWig (plus strand signal of all reads) 95.1 MB
ENCFF309DAF.tsv tsv (gene quantifications) 10.4 MB
ENCFF342XFY.bam bam (alignments) 3.4 GB
ENCFF351JWB.bam bam (alignments) 4.0 GB
ENCFF352IAS.bam bam (alignments) 3.5 GB
ENCFF360DAA.bigWig bigWig (minus strand signal of unique reads) 77.1 MB
ENCFF362NYO.bigWig bigWig (minus strand signal of unique reads) 73.2 MB
ENCFF369YBC.tar tar (differential splicing quantifications) 3.6 MB
ENCFF380SIA.bigWig bigWig (plus strand signal of all reads) 89.7 MB
ENCFF391FHL.tsv tsv (transcript quantifications) 24.9 MB
ENCFF395GPY.fastq fastq (reads) 2.3 GB
ENCFF395IFY.bigWig bigWig (plus strand signal of unique reads) 75.1 MB
ENCFF426AYS.bam bam (transcriptome alignments) 5.6 GB
ENCFF438DZM.bigWig bigWig (minus strand signal of unique reads) 81.2 MB
ENCFF453PCG.bigWig bigWig (plus strand signal of unique reads) 74.2 MB
ENCFF483XLX.bigWig bigWig (plus strand signal of unique reads) 79.6 MB
ENCFF491YEG.tsv tsv (transcript quantifications) 24.9 MB
ENCFF508IUG.bigWig bigWig (plus strand signal of all reads) 81.3 MB
ENCFF508LXX.bigWig bigWig (plus strand signal of unique reads) 83.9 MB
ENCFF516JLL.bigWig bigWig (plus strand signal of all reads) 79.5 MB
ENCFF521TIY.bam bam (transcriptome alignments) 4.8 GB
ENCFF521VSR.bigWig bigWig (minus strand signal of unique reads) 68.5 MB
ENCFF522IHV.bigWig bigWig (plus strand signal of all reads) 81.2 MB
ENCFF531FDU.fastq fastq (reads) 2.3 GB
ENCFF535IUG.bigWig bigWig (plus strand signal of all reads) 93.7 MB
ENCFF551KLI.bigWig bigWig (plus strand signal of unique reads) 83.4 MB
ENCFF553BUE.bigWig bigWig (minus strand signal of unique reads) 76.8 MB
ENCFF558JKU.bigWig bigWig (plus strand signal of all reads) 87.9 MB
ENCFF604VPG.bigWig bigWig (minus strand signal of all reads) 75.3 MB
ENCFF605FBD.bigWig bigWig (plus strand signal of all reads) 83.6 MB
ENCFF607FTT.bam bam (alignments) 2.8 GB
ENCFF644DDX.bam bam (alignments) 2.8 GB
ENCFF646LMT.bigWig bigWig (minus strand signal of unique reads) 76.3 MB
ENCFF647FOH.bigWig bigWig (plus strand signal of unique reads) 70.5 MB
ENCFF693TGT.bigWig bigWig (minus strand signal of unique reads) 77.7 MB
ENCFF695LGF.tsv tsv (gene quantifications) 9.1 MB
ENCFF698YCS.bigWig bigWig (minus strand signal of unique reads) 72.3 MB
ENCFF738THL.tar tar (differential splicing quantifications) 4.3 MB
ENCFF743WLQ.bigWig bigWig (minus strand signal of all reads) 83.4 MB
ENCFF745BEC.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF749JGK.bam bam (alignments) 4.3 GB
ENCFF754RHC.fastq fastq (reads) 2.0 GB
ENCFF755CWC.bigWig bigWig (minus strand signal of all reads) 93.9 MB
ENCFF756WPD.bam bam (alignments) 4.3 GB
ENCFF770KDN.tsv tsv (gene quantifications) 9.4 MB
ENCFF777VFR.bam bam (transcriptome alignments) 4.9 GB
ENCFF795BLZ.bam bam (alignments) 2.8 GB
ENCFF802BZS.bigWig bigWig (minus strand signal of all reads) 79.7 MB
ENCFF804FMP.tsv tsv (differential expression quantifications) 2.0 MB
ENCFF826WCC.bam bam (alignments) 3.2 GB
ENCFF851VKJ.bam bam (transcriptome alignments) 4.8 GB
ENCFF867JUI.tar tar (differential splicing quantifications) 14.9 MB
ENCFF869ACK.bam bam (alignments) 3.5 GB
ENCFF883ATT.bigWig bigWig (minus strand signal of all reads) 86.8 MB
ENCFF886HZN.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF887NIM.tsv tsv (transcript quantifications) 25.3 MB
ENCFF894FJA.tsv tsv (transcript quantifications) 29.8 MB
ENCFF911NQE.bam bam (alignments) 3.4 GB
ENCFF946DOM.bigWig bigWig (minus strand signal of all reads) 93.9 MB
ENCFF960OMR.bigWig bigWig (minus strand signal of unique reads) 81.4 MB
ENCFF989FRE.bigWig bigWig (plus strand signal of all reads) 84.8 MB
ENCSR861ENA ENCSR · via encode_api

shRNA knockdown against EIF2S1 in HepG2 cells followed by RNA-seq. (EIF2S1-BGHLV12)

Homo sapiens

92 data files
FileTypeSize
ENCFF005IVF.bigWig bigWig (minus strand signal of all reads) 92.7 MB
ENCFF008SXV.bigWig bigWig (plus strand signal of all reads) 82.7 MB
ENCFF032ZUM.bigWig bigWig (plus strand signal of all reads) 89.3 MB
ENCFF037QEG.tsv tsv (gene quantifications) 9.1 MB
ENCFF064LCJ.bam bam (alignments) 5.2 GB
ENCFF127TFO.bigWig bigWig (plus strand signal of all reads) 93.9 MB
ENCFF127XPM.bigWig bigWig (plus strand signal of unique reads) 76.8 MB
ENCFF130GUN.tar tar (differential splicing quantifications) 16.4 MB
ENCFF132JUG.tsv tsv (transcript quantifications) 27.4 MB
ENCFF137WXI.bigWig bigWig (plus strand signal of unique reads) 84.7 MB
ENCFF139ROY.bam bam (transcriptome alignments) 8.7 GB
ENCFF161VPA.tsv tsv (gene quantifications) 9.1 MB
ENCFF179DQK.tsv tsv (gene quantifications) 9.4 MB
ENCFF179KQA.bigWig bigWig (plus strand signal of unique reads) 81.0 MB
ENCFF188MUD.bam bam (alignments) 5.0 GB
ENCFF203GDJ.bigWig bigWig (minus strand signal of unique reads) 71.9 MB
ENCFF226ZHP.bam bam (transcriptome alignments) 7.7 GB
ENCFF231LOC.bigWig bigWig (minus strand signal of all reads) 88.1 MB
ENCFF240LOQ.bigWig bigWig (minus strand signal of unique reads) 78.9 MB
ENCFF243GFU.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF245HYS.fastq fastq (reads) 3.0 GB
ENCFF273VIE.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF286BLM.tsv tsv (transcript quantifications) 25.3 MB
ENCFF287DXE.bam bam (alignments) 4.5 GB
ENCFF312DCI.bigWig bigWig (minus strand signal of unique reads) 79.0 MB
ENCFF328RWO.tsv tsv (differential expression quantifications) 3.0 MB
ENCFF329RNX.tsv tsv (gene quantifications) 10.4 MB
ENCFF356VXI.bigWig bigWig (minus strand signal of unique reads) 75.2 MB
ENCFF378RUW.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF380FSP.bigWig bigWig (minus strand signal of all reads) 81.5 MB
ENCFF387IPN.bigWig bigWig (plus strand signal of unique reads) 76.7 MB
ENCFF392GWF.bigWig bigWig (plus strand signal of unique reads) 80.8 MB
ENCFF392XBJ.fastq fastq (reads) 3.3 GB
ENCFF405UJA.fastq fastq (reads) 2.9 GB
ENCFF416DPO.bigWig bigWig (plus strand signal of unique reads) 73.7 MB
ENCFF416VKJ.tsv tsv (differential expression quantifications) 4.4 MB
ENCFF418NVI.tar tar (differential splicing quantifications) 3.1 MB
ENCFF420DKY.bigWig bigWig (plus strand signal of unique reads) 78.6 MB
ENCFF423MPN.bigWig bigWig (plus strand signal of unique reads) 80.8 MB
ENCFF427KIB.bam bam (transcriptome alignments) 6.9 GB
ENCFF432ATJ.bam bam (alignments) 4.7 GB
ENCFF458PTC.bam bam (alignments) 6.1 GB
ENCFF472MPN.tsv tsv (transcript quantifications) 27.3 MB
ENCFF480TDO.bigWig bigWig (minus strand signal of all reads) 79.8 MB
ENCFF482AIY.bigWig bigWig (minus strand signal of all reads) 92.7 MB
ENCFF484BQB.bigWig bigWig (plus strand signal of unique reads) 80.5 MB
ENCFF489WCJ.bigWig bigWig (minus strand signal of unique reads) 82.7 MB
ENCFF506IYU.bigWig bigWig (plus strand signal of all reads) 93.9 MB
ENCFF537TAR.bigWig bigWig (plus strand signal of unique reads) 81.1 MB
ENCFF543HFN.bam bam (transcriptome alignments) 7.8 GB
ENCFF549TRW.tsv tsv (transcript quantifications) 24.9 MB
ENCFF560TAA.bam bam (alignments) 5.1 GB
ENCFF573ZTC.tsv tsv (transcript quantifications) 25.3 MB
ENCFF577XRQ.bigWig bigWig (minus strand signal of all reads) 88.2 MB
ENCFF587DYJ.bigWig bigWig (minus strand signal of all reads) 83.1 MB
ENCFF605JAX.bam bam (transcriptome alignments) 6.9 GB
ENCFF610AAZ.bam bam (alignments) 6.1 GB
ENCFF694QWV.tsv tsv (transcript quantifications) 24.9 MB
ENCFF697YTT.bigWig bigWig (minus strand signal of all reads) 81.9 MB
ENCFF699NBD.bam bam (alignments) 4.5 GB
ENCFF704QFI.bigWig bigWig (minus strand signal of unique reads) 83.1 MB
ENCFF711IKC.fastq fastq (reads) 3.3 GB
ENCFF715SYX.bigWig bigWig (minus strand signal of unique reads) 83.6 MB
ENCFF732ERS.bigWig bigWig (minus strand signal of all reads) 87.5 MB
ENCFF749JVP.bigWig bigWig (plus strand signal of unique reads) 85.0 MB
ENCFF757BLK.bigWig bigWig (minus strand signal of all reads) 77.9 MB
ENCFF766XCL.bigWig bigWig (minus strand signal of all reads) 92.7 MB
ENCFF776MXG.bam bam (alignments) 5.9 GB
ENCFF782AYV.bigWig bigWig (plus strand signal of all reads) 79.0 MB
ENCFF783KCK.bam bam (alignments) 5.0 GB
ENCFF787YVM.bigWig bigWig (plus strand signal of all reads) 93.9 MB
ENCFF789GUB.tsv tsv (gene quantifications) 10.4 MB
ENCFF792HKL.bigWig bigWig (plus strand signal of all reads) 89.3 MB
ENCFF793CAZ.bam bam (transcriptome alignments) 7.8 GB
ENCFF816LFC.bigWig bigWig (plus strand signal of all reads) 85.9 MB
ENCFF819TTB.tar tar (differential splicing quantifications) 3.8 MB
ENCFF820MPR.tsv tsv (transcript quantifications) 29.8 MB
ENCFF824UOL.bigWig bigWig (plus strand signal of all reads) 88.5 MB
ENCFF830SGK.bigWig bigWig (plus strand signal of all reads) 84.2 MB
ENCFF857MUO.bam bam (alignments) 5.7 GB
ENCFF862JDA.bigWig bigWig (minus strand signal of unique reads) 74.9 MB
ENCFF879ZAE.bam bam (alignments) 5.7 GB
ENCFF881JJI.bigWig bigWig (plus strand signal of all reads) 80.9 MB
ENCFF893BTS.bigWig bigWig (minus strand signal of all reads) 84.5 MB
ENCFF928OQA.bigWig bigWig (plus strand signal of all reads) 83.2 MB
ENCFF944GVM.tsv tsv (gene quantifications) 9.5 MB
ENCFF951AFL.bigWig bigWig (minus strand signal of unique reads) 79.1 MB
ENCFF961CWD.bigWig bigWig (minus strand signal of unique reads) 78.9 MB
ENCFF965DFG.bigWig bigWig (minus strand signal of unique reads) 76.5 MB
ENCFF967UGD.bigWig bigWig (plus strand signal of unique reads) 85.6 MB
ENCFF987OKI.bigWig bigWig (minus strand signal of unique reads) 79.2 MB
ENCFF997ECP.tsv tsv (transcript quantifications) 29.8 MB
ENCSR424YSV ENCSR · via encode_api

shRNA knockdown against AATF in HepG2 cells followed by RNA-seq. (AATF BGHLV14)

Homo sapiens

92 data files
FileTypeSize
ENCFF056OLU.bigWig bigWig (minus strand signal of unique reads) 64.1 MB
ENCFF057WZB.bam bam (alignments) 3.4 GB
ENCFF067ATH.bigWig bigWig (plus strand signal of all reads) 80.2 MB
ENCFF067SCI.bigWig bigWig (minus strand signal of all reads) 68.5 MB
ENCFF094WZU.fastq fastq (reads) 2.0 GB
ENCFF105BZB.bam bam (transcriptome alignments) 4.9 GB
ENCFF159JHT.bam bam (alignments) 3.1 GB
ENCFF166NVP.bigWig bigWig (minus strand signal of unique reads) 67.3 MB
ENCFF167QJJ.bigWig bigWig (plus strand signal of all reads) 69.4 MB
ENCFF176JRJ.tsv tsv (transcript quantifications) 29.8 MB
ENCFF185IND.tsv tsv (transcript quantifications) 24.9 MB
ENCFF188WYX.tsv tsv (transcript quantifications) 24.9 MB
ENCFF193NJZ.bam bam (transcriptome alignments) 4.6 GB
ENCFF194JQO.bam bam (transcriptome alignments) 5.2 GB
ENCFF197ZIM.tsv tsv (gene quantifications) 9.4 MB
ENCFF200KFD.bigWig bigWig (plus strand signal of unique reads) 66.7 MB
ENCFF204TFW.tsv tsv (gene quantifications) 9.1 MB
ENCFF214AFE.bigWig bigWig (plus strand signal of all reads) 73.8 MB
ENCFF222XTF.bigWig bigWig (plus strand signal of unique reads) 69.0 MB
ENCFF236JSL.bigWig bigWig (plus strand signal of unique reads) 73.4 MB
ENCFF239VKP.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF248XGQ.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF253LJO.bigWig bigWig (minus strand signal of unique reads) 67.9 MB
ENCFF276CIP.bigWig bigWig (minus strand signal of unique reads) 64.4 MB
ENCFF278ESF.bigWig bigWig (plus strand signal of all reads) 71.1 MB
ENCFF283ZEU.bam bam (alignments) 3.7 GB
ENCFF289EBS.tsv tsv (differential expression quantifications) 4.2 MB
ENCFF289RBQ.bigWig bigWig (plus strand signal of unique reads) 68.7 MB
ENCFF306SRL.bigWig bigWig (minus strand signal of all reads) 68.3 MB
ENCFF366HAD.bigWig bigWig (plus strand signal of all reads) 81.0 MB
ENCFF399ZDJ.tsv tsv (gene quantifications) 10.4 MB
ENCFF411WPI.tsv tsv (gene quantifications) 9.4 MB
ENCFF422ZHG.bigWig bigWig (plus strand signal of all reads) 81.0 MB
ENCFF425BOP.bigWig bigWig (minus strand signal of all reads) 65.0 MB
ENCFF433PIX.tsv tsv (transcript quantifications) 27.3 MB
ENCFF434WFA.fastq fastq (reads) 2.0 GB
ENCFF437MHN.bam bam (alignments) 3.8 GB
ENCFF438EXK.bigWig bigWig (minus strand signal of all reads) 69.8 MB
ENCFF439HOS.tsv tsv (transcript quantifications) 25.3 MB
ENCFF451CTK.bam bam (alignments) 3.1 GB
ENCFF460JOK.bigWig bigWig (plus strand signal of unique reads) 65.6 MB
ENCFF489UDT.bigWig bigWig (minus strand signal of all reads) 79.8 MB
ENCFF493TDE.bigWig bigWig (plus strand signal of all reads) 75.3 MB
ENCFF494YSK.tar tar (differential splicing quantifications) 14.6 MB
ENCFF495IAN.bigWig bigWig (minus strand signal of unique reads) 71.7 MB
ENCFF495VXI.fastq fastq (reads) 2.2 GB
ENCFF506VQS.bigWig bigWig (plus strand signal of unique reads) 61.8 MB
ENCFF510KSY.bam bam (alignments) 3.9 GB
ENCFF513PLR.bigWig bigWig (minus strand signal of unique reads) 71.7 MB
ENCFF526VYD.bigWig bigWig (plus strand signal of all reads) 74.6 MB
ENCFF529BTY.bigWig bigWig (plus strand signal of unique reads) 73.5 MB
ENCFF548EGO.bigWig bigWig (minus strand signal of all reads) 75.1 MB
ENCFF558MLN.bigWig bigWig (minus strand signal of all reads) 79.8 MB
ENCFF567UYW.bigWig bigWig (plus strand signal of unique reads) 69.5 MB
ENCFF568OTV.bigWig bigWig (minus strand signal of all reads) 72.7 MB
ENCFF592ZUE.bigWig bigWig (plus strand signal of unique reads) 69.0 MB
ENCFF604VKE.tsv tsv (transcript quantifications) 29.8 MB
ENCFF608LJF.bigWig bigWig (plus strand signal of unique reads) 73.4 MB
ENCFF612NRB.bigWig bigWig (minus strand signal of all reads) 79.2 MB
ENCFF613JDO.bigWig bigWig (minus strand signal of all reads) 73.3 MB
ENCFF613ZNN.bigWig bigWig (minus strand signal of all reads) 74.2 MB
ENCFF615QTZ.bigWig bigWig (minus strand signal of unique reads) 60.3 MB
ENCFF624LCT.bam bam (alignments) 4.0 GB
ENCFF644NNP.tsv tsv (differential expression quantifications) 5.5 MB
ENCFF653XUF.bigWig bigWig (minus strand signal of unique reads) 71.6 MB
ENCFF654ECA.tar tar (differential splicing quantifications) 2.9 MB
ENCFF668LIL.bam bam (alignments) 3.2 GB
ENCFF669VFH.bigWig bigWig (plus strand signal of all reads) 69.6 MB
ENCFF695STL.fastq fastq (reads) 2.1 GB
ENCFF706DUW.tsv tsv (transcript quantifications) 25.3 MB
ENCFF715LPA.tsv tsv (transcript quantifications) 27.3 MB
ENCFF729KUE.bigWig bigWig (minus strand signal of unique reads) 67.7 MB
ENCFF747ISO.bigWig bigWig (plus strand signal of all reads) 76.3 MB
ENCFF751HCX.tar tar (differential splicing quantifications) 3.3 MB
ENCFF758VSN.bigWig bigWig (minus strand signal of unique reads) 65.0 MB
ENCFF785QEW.tsv tsv (gene quantifications) 10.4 MB
ENCFF800WEJ.bam bam (alignments) 3.3 GB
ENCFF809YZX.bam bam (alignments) 4.0 GB
ENCFF813UHU.bigWig bigWig (plus strand signal of all reads) 66.0 MB
ENCFF816HBQ.bigWig bigWig (minus strand signal of unique reads) 67.0 MB
ENCFF821DUY.bigWig bigWig (plus strand signal of unique reads) 65.9 MB
ENCFF852CTI.bam bam (transcriptome alignments) 4.9 GB
ENCFF862YRY.bam bam (transcriptome alignments) 5.5 GB
ENCFF870IYO.bigWig bigWig (plus strand signal of all reads) 76.3 MB
ENCFF885IRJ.bigWig bigWig (minus strand signal of all reads) 75.1 MB
ENCFF889RQB.bam bam (alignments) 3.3 GB
ENCFF894KMA.tsv tsv (gene quantifications) 9.1 MB
ENCFF900FTG.bam bam (alignments) 3.8 GB
ENCFF901PFS.tsv tsv (differential expression quantifications) 1.8 MB
ENCFF937FEE.bigWig bigWig (plus strand signal of unique reads) 69.3 MB
ENCFF942OCT.bam bam (transcriptome alignments) 4.6 GB
ENCFF974DDW.bigWig bigWig (minus strand signal of unique reads) 67.3 MB
ENCSR839KAX ENCSR · via encode_api

eCLIP control experiment on HepG2 against FAM120A

Homo sapiens

8 data files
FileTypeSize
ENCFF079HLW.bigWig bigWig (minus strand signal of unique reads) 22.0 MB
ENCFF186RBL.bam bam (alignments) 490.4 MB
ENCFF333KJO.bam bam (alignments) 488.1 MB
ENCFF341HEH.bigWig bigWig (minus strand signal of unique reads) 21.9 MB
ENCFF611TNV.bigWig bigWig (plus strand signal of unique reads) 22.6 MB
ENCFF626CNS.bigWig bigWig (plus strand signal of unique reads) 22.7 MB
ENCFF869DFG.fastq fastq (reads) 632.8 MB
ENCFF903ZBT.fastq fastq (reads) 626.6 MB
ENCSR038TMA ENCSR · via encode_api

eCLIP control experiment on K562 against SBDS

Homo sapiens

8 data files
FileTypeSize
ENCFF014PFO.bigWig bigWig (plus strand signal of unique reads) 6.7 MB
ENCFF058ZJG.bigWig bigWig (minus strand signal of unique reads) 6.5 MB
ENCFF270EUA.fastq fastq (reads) 325.0 MB
ENCFF310FMZ.bam bam (alignments) 157.4 MB
ENCFF397TYS.fastq fastq (reads) 353.1 MB
ENCFF541LWG.bigWig bigWig (minus strand signal of unique reads) 6.5 MB
ENCFF600AGC.bam bam (alignments) 158.3 MB
ENCFF617GDR.bigWig bigWig (plus strand signal of unique reads) 6.8 MB
ENCSR197NFH ENCSR · via encode_api

eCLIP control experiment on K562 against KHDRBS1

Homo sapiens

8 data files
FileTypeSize
ENCFF103MMX.bigWig bigWig (minus strand signal of unique reads) 19.6 MB
ENCFF351LXK.bigWig bigWig (plus strand signal of unique reads) 20.2 MB
ENCFF413EEC.fastq fastq (reads) 577.1 MB
ENCFF721FKR.bam bam (alignments) 401.7 MB
ENCFF810KLH.bigWig bigWig (minus strand signal of unique reads) 19.5 MB
ENCFF846HLE.bigWig bigWig (plus strand signal of unique reads) 20.3 MB
ENCFF931YGS.bam bam (alignments) 402.7 MB
ENCFF949DMR.fastq fastq (reads) 515.3 MB
ENCSR115GAA ENCSR · via encode_api

eCLIP control experiment on HepG2 against PCBP2

Homo sapiens

8 data files
FileTypeSize
ENCFF107SOW.bigWig bigWig (plus strand signal of unique reads) 20.8 MB
ENCFF124RDW.bam bam (alignments) 468.4 MB
ENCFF130FRI.fastq fastq (reads) 484.6 MB
ENCFF190ITO.bam bam (alignments) 472.7 MB
ENCFF549RZP.bigWig bigWig (plus strand signal of unique reads) 20.6 MB
ENCFF736TLU.bigWig bigWig (minus strand signal of unique reads) 20.5 MB
ENCFF753RZO.bigWig bigWig (minus strand signal of unique reads) 20.3 MB
ENCFF837BRE.fastq fastq (reads) 535.2 MB
ENCSR468ZQA ENCSR · via encode_api

eCLIP control experiment on K562 against NPM1

Homo sapiens

8 data files
FileTypeSize
ENCFF040BAA.fastq fastq (reads) 490.3 MB
ENCFF062ETM.bam bam (alignments) 263.3 MB
ENCFF209VJW.fastq fastq (reads) 433.1 MB
ENCFF240BEY.bigWig bigWig (minus strand signal of unique reads) 14.1 MB
ENCFF494JUE.bam bam (alignments) 263.4 MB
ENCFF607JJN.bigWig bigWig (plus strand signal of unique reads) 14.7 MB
ENCFF655PPJ.bigWig bigWig (plus strand signal of unique reads) 14.7 MB
ENCFF850UAL.bigWig bigWig (minus strand signal of unique reads) 14.2 MB
ENCSR201WFU ENCSR · via encode_api

shRNA knockdown against RDBP in K562 cells followed by RNA-seq. (RDBP-LV11)

Homo sapiens

92 data files
FileTypeSize
ENCFF016WLG.bigWig bigWig (plus strand signal of all reads) 87.9 MB
ENCFF039JDH.bigWig bigWig (plus strand signal of unique reads) 93.9 MB
ENCFF039VOR.bigWig bigWig (minus strand signal of all reads) 86.6 MB
ENCFF053LTT.bam bam (transcriptome alignments) 3.9 GB
ENCFF062UFO.bam bam (alignments) 4.0 GB
ENCFF078YJH.bigWig bigWig (plus strand signal of all reads) 108.3 MB
ENCFF099QOA.bigWig bigWig (minus strand signal of all reads) 105.2 MB
ENCFF100KCM.bigWig bigWig (plus strand signal of unique reads) 90.4 MB
ENCFF111KJK.bigWig bigWig (minus strand signal of unique reads) 88.1 MB
ENCFF123DLA.bam bam (alignments) 3.4 GB
ENCFF130KYO.fastq fastq (reads) 1.8 GB
ENCFF133QJC.tsv tsv (transcript quantifications) 29.8 MB
ENCFF138BPC.bigWig bigWig (minus strand signal of unique reads) 84.5 MB
ENCFF142VZN.bigWig bigWig (minus strand signal of all reads) 86.5 MB
ENCFF145NMJ.bigWig bigWig (plus strand signal of all reads) 108.3 MB
ENCFF164IJU.bigWig bigWig (minus strand signal of all reads) 106.8 MB
ENCFF185ZLU.bigWig bigWig (minus strand signal of unique reads) 74.2 MB
ENCFF201IXD.fastq fastq (reads) 1.9 GB
ENCFF202WCG.tsv tsv (transcript quantifications) 24.9 MB
ENCFF209QTY.bigWig bigWig (minus strand signal of all reads) 99.3 MB
ENCFF236PQV.bigWig bigWig (plus strand signal of unique reads) 86.7 MB
ENCFF257DOR.bigWig bigWig (plus strand signal of unique reads) 90.5 MB
ENCFF282UYF.bigWig bigWig (minus strand signal of unique reads) 78.5 MB
ENCFF289EYT.bigWig bigWig (plus strand signal of all reads) 106.8 MB
ENCFF301AZK.bigWig bigWig (plus strand signal of all reads) 88.3 MB
ENCFF310FGU.bigWig bigWig (plus strand signal of unique reads) 89.3 MB
ENCFF315DUN.bigWig bigWig (minus strand signal of unique reads) 83.9 MB
ENCFF326COV.bam bam (transcriptome alignments) 4.0 GB
ENCFF331UJG.bigWig bigWig (minus strand signal of unique reads) 91.5 MB
ENCFF345GDJ.bigWig bigWig (plus strand signal of unique reads) 80.8 MB
ENCFF350XCC.tsv tsv (differential expression quantifications) 4.3 MB
ENCFF357SOQ.bigWig bigWig (plus strand signal of all reads) 91.2 MB
ENCFF385IDU.bigWig bigWig (minus strand signal of unique reads) 80.4 MB
ENCFF407OMU.tsv tsv (gene quantifications) 9.5 MB
ENCFF413ZGX.bigWig bigWig (minus strand signal of unique reads) 87.1 MB
ENCFF419SPG.bigWig bigWig (minus strand signal of unique reads) 92.6 MB
ENCFF424FSL.bigWig bigWig (plus strand signal of unique reads) 76.5 MB
ENCFF425HKM.bam bam (alignments) 3.8 GB
ENCFF436SCC.bigWig bigWig (minus strand signal of all reads) 92.8 MB
ENCFF447PGG.bigWig bigWig (minus strand signal of unique reads) 88.3 MB
ENCFF447TGF.bam bam (alignments) 2.7 GB
ENCFF460JUI.bam bam (alignments) 2.9 GB
ENCFF465XZI.bigWig bigWig (minus strand signal of unique reads) 79.9 MB
ENCFF471ZRU.tar tar (differential splicing quantifications) 3.9 MB
ENCFF473BOY.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF476EGX.bigWig bigWig (plus strand signal of unique reads) 82.1 MB
ENCFF480RFK.bigWig bigWig (plus strand signal of unique reads) 94.5 MB
ENCFF487JWY.bigWig bigWig (plus strand signal of all reads) 100.6 MB
ENCFF529EVS.bam bam (transcriptome alignments) 4.3 GB
ENCFF533WJC.tsv tsv (transcript quantifications) 29.8 MB
ENCFF543VMH.bam bam (alignments) 2.9 GB
ENCFF547OEY.tsv tsv (transcript quantifications) 27.4 MB
ENCFF563SVX.bigWig bigWig (plus strand signal of all reads) 89.4 MB
ENCFF574CUS.bam bam (alignments) 2.8 GB
ENCFF580XZP.bigWig bigWig (plus strand signal of unique reads) 95.0 MB
ENCFF585YDT.tsv tsv (differential expression quantifications) 2.6 MB
ENCFF588TPP.tar tar (differential splicing quantifications) 3.3 MB
ENCFF589IKE.tsv tsv (differential expression quantifications) 5.4 MB
ENCFF602UFH.tsv tsv (gene quantifications) 9.1 MB
ENCFF618RXZ.bigWig bigWig (minus strand signal of all reads) 106.8 MB
ENCFF650CQJ.tsv tsv (gene quantifications) 10.4 MB
ENCFF657OJS.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF658OQH.bam bam (transcriptome alignments) 4.3 GB
ENCFF661DNZ.bam bam (transcriptome alignments) 5.1 GB
ENCFF662RXW.bigWig bigWig (plus strand signal of unique reads) 86.4 MB
ENCFF665WMD.bam bam (alignments) 3.7 GB
ENCFF698DHA.bigWig bigWig (minus strand signal of all reads) 81.5 MB
ENCFF720VVY.bigWig bigWig (minus strand signal of all reads) 89.7 MB
ENCFF731DMP.tsv tsv (transcript quantifications) 27.4 MB
ENCFF739CIE.bigWig bigWig (plus strand signal of all reads) 83.1 MB
ENCFF759XIJ.tsv tsv (transcript quantifications) 24.9 MB
ENCFF793DOA.bigWig bigWig (plus strand signal of all reads) 94.7 MB
ENCFF793ZJX.tsv tsv (transcript quantifications) 25.3 MB
ENCFF840XQJ.tsv tsv (gene quantifications) 9.4 MB
ENCFF850FPZ.tsv tsv (gene quantifications) 10.4 MB
ENCFF851STY.fastq fastq (reads) 2.0 GB
ENCFF855IBS.bam bam (transcriptome alignments) 4.7 GB
ENCFF857GQM.bigWig bigWig (minus strand signal of all reads) 87.7 MB
ENCFF894ADD.bam bam (alignments) 4.0 GB
ENCFF895XCH.tsv tsv (gene quantifications) 9.1 MB
ENCFF896WXL.fastq fastq (reads) 2.1 GB
ENCFF915UMG.bigWig bigWig (minus strand signal of unique reads) 91.9 MB
ENCFF916OQQ.bigWig bigWig (minus strand signal of all reads) 100.7 MB
ENCFF926MWB.tsv tsv (transcript quantifications) 25.3 MB
ENCFF931IVH.bigWig bigWig (minus strand signal of all reads) 100.7 MB
ENCFF941PND.bam bam (alignments) 2.7 GB
ENCFF949PHF.tar tar (differential splicing quantifications) 15.7 MB
ENCFF969IXG.bigWig bigWig (plus strand signal of unique reads) 82.4 MB
ENCFF982IGK.bigWig bigWig (plus strand signal of all reads) 102.0 MB
ENCFF990ZQZ.bigWig bigWig (plus strand signal of all reads) 102.0 MB
ENCFF991YIT.bam bam (alignments) 3.0 GB
ENCFF997ZNB.bam bam (alignments) 3.7 GB
ENCSR952RRH ENCSR · via encode_api

shRNA knockdown against IGF2BP2 in K562 cells followed by RNA-seq. (IGF2BP2-LV11)

Homo sapiens

92 data files
FileTypeSize
ENCFF002FEA.tsv tsv (transcript quantifications) 27.4 MB
ENCFF017YOE.bigWig bigWig (plus strand signal of unique reads) 76.0 MB
ENCFF022MFZ.bam bam (alignments) 3.4 GB
ENCFF025HIK.bigWig bigWig (plus strand signal of unique reads) 98.7 MB
ENCFF028NMK.tsv tsv (gene quantifications) 9.1 MB
ENCFF033KCB.bigWig bigWig (plus strand signal of unique reads) 88.0 MB
ENCFF039UHL.bigWig bigWig (minus strand signal of unique reads) 86.4 MB
ENCFF040RKC.bam bam (transcriptome alignments) 6.0 GB
ENCFF041OOI.bigWig bigWig (plus strand signal of all reads) 94.9 MB
ENCFF074BOQ.bigWig bigWig (minus strand signal of unique reads) 73.7 MB
ENCFF076AIR.bigWig bigWig (plus strand signal of all reads) 86.0 MB
ENCFF095ZTX.bigWig bigWig (plus strand signal of all reads) 97.9 MB
ENCFF124VNA.bigWig bigWig (minus strand signal of all reads) 109.7 MB
ENCFF133TNC.bigWig bigWig (minus strand signal of unique reads) 85.7 MB
ENCFF134MKJ.tar tar (differential splicing quantifications) 15.8 MB
ENCFF147DLK.bam bam (alignments) 3.0 GB
ENCFF149YUZ.tsv tsv (gene quantifications) 9.5 MB
ENCFF159BTO.tsv tsv (gene quantifications) 9.1 MB
ENCFF162MYQ.bam bam (transcriptome alignments) 5.1 GB
ENCFF162ZAF.bam bam (alignments) 4.6 GB
ENCFF172SZN.bigWig bigWig (minus strand signal of all reads) 96.6 MB
ENCFF180QDQ.bigWig bigWig (plus strand signal of unique reads) 88.6 MB
ENCFF186RDD.bigWig bigWig (minus strand signal of all reads) 84.9 MB
ENCFF190RIE.tsv tsv (transcript quantifications) 25.3 MB
ENCFF203DHD.bigWig bigWig (plus strand signal of unique reads) 80.2 MB
ENCFF242IZB.bigWig bigWig (plus strand signal of unique reads) 97.6 MB
ENCFF245GRT.bigWig bigWig (minus strand signal of all reads) 89.9 MB
ENCFF255GDS.fastq fastq (reads) 2.1 GB
ENCFF263MYG.fastq fastq (reads) 2.3 GB
ENCFF266NZJ.bigWig bigWig (minus strand signal of unique reads) 96.0 MB
ENCFF267CPI.tsv tsv (differential expression quantifications) 4.3 MB
ENCFF301NOC.bigWig bigWig (plus strand signal of all reads) 111.2 MB
ENCFF307TNQ.bigWig bigWig (minus strand signal of all reads) 99.0 MB
ENCFF309EWO.bigWig bigWig (minus strand signal of unique reads) 85.6 MB
ENCFF309KBJ.bigWig bigWig (plus strand signal of all reads) 100.4 MB
ENCFF317QIA.tsv tsv (gene quantifications) 9.5 MB
ENCFF329ZQE.bigWig bigWig (minus strand signal of unique reads) 95.2 MB
ENCFF336FZL.bigWig bigWig (minus strand signal of unique reads) 78.5 MB
ENCFF342KAE.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF342OBS.bam bam (alignments) 3.0 GB
ENCFF361XUW.bigWig bigWig (minus strand signal of all reads) 81.4 MB
ENCFF363WSO.bigWig bigWig (plus strand signal of unique reads) 88.1 MB
ENCFF366FNT.bigWig bigWig (minus strand signal of unique reads) 85.8 MB
ENCFF377DNM.bam bam (alignments) 4.4 GB
ENCFF378FOP.bigWig bigWig (minus strand signal of unique reads) 82.3 MB
ENCFF378WPB.tsv tsv (transcript quantifications) 29.8 MB
ENCFF379MZG.tsv tsv (differential expression quantifications) 5.5 MB
ENCFF392AYD.bam bam (transcriptome alignments) 5.0 GB
ENCFF394UEG.fastq fastq (reads) 2.1 GB
ENCFF407VNW.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF419STS.bigWig bigWig (minus strand signal of all reads) 93.6 MB
ENCFF420KKL.bigWig bigWig (plus strand signal of unique reads) 98.6 MB
ENCFF428LZS.bigWig bigWig (plus strand signal of unique reads) 88.9 MB
ENCFF436AIL.tsv tsv (transcript quantifications) 24.9 MB
ENCFF439RKX.tsv tsv (transcript quantifications) 24.9 MB
ENCFF507MDT.bigWig bigWig (minus strand signal of all reads) 84.6 MB
ENCFF509CYL.bigWig bigWig (plus strand signal of all reads) 91.6 MB
ENCFF509MXW.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF515VOW.bigWig bigWig (minus strand signal of unique reads) 86.3 MB
ENCFF519QTM.tsv tsv (transcript quantifications) 27.4 MB
ENCFF519XDG.bam bam (alignments) 3.4 GB
ENCFF531XEG.bigWig bigWig (minus strand signal of all reads) 109.6 MB
ENCFF540HZG.tsv tsv (gene quantifications) 10.4 MB
ENCFF591CNF.bigWig bigWig (minus strand signal of all reads) 98.9 MB
ENCFF602HZY.bigWig bigWig (plus strand signal of unique reads) 87.8 MB
ENCFF604UEV.tar tar (differential splicing quantifications) 3.6 MB
ENCFF649XHC.bigWig bigWig (plus strand signal of all reads) 97.0 MB
ENCFF678YPN.bigWig bigWig (plus strand signal of all reads) 100.4 MB
ENCFF679KRQ.tar tar (differential splicing quantifications) 4.2 MB
ENCFF687TNT.bigWig bigWig (minus strand signal of unique reads) 78.1 MB
ENCFF696ESI.bigWig bigWig (plus strand signal of all reads) 83.1 MB
ENCFF702BNJ.bigWig bigWig (minus strand signal of all reads) 107.4 MB
ENCFF712UEH.bam bam (alignments) 4.1 GB
ENCFF737KVG.bam bam (alignments) 3.1 GB
ENCFF739FOM.bam bam (alignments) 3.9 GB
ENCFF754KQQ.bigWig bigWig (minus strand signal of unique reads) 96.2 MB
ENCFF786DRQ.bigWig bigWig (plus strand signal of all reads) 108.9 MB
ENCFF792MWZ.bigWig bigWig (minus strand signal of all reads) 95.1 MB
ENCFF812HZI.bigWig bigWig (plus strand signal of unique reads) 80.8 MB
ENCFF831YHR.bam bam (transcriptome alignments) 5.3 GB
ENCFF838OFZ.bam bam (alignments) 3.5 GB
ENCFF844FSC.bam bam (transcriptome alignments) 4.5 GB
ENCFF851PIO.tsv tsv (transcript quantifications) 25.3 MB
ENCFF856YXH.bigWig bigWig (plus strand signal of unique reads) 84.8 MB
ENCFF868UFK.fastq fastq (reads) 2.4 GB
ENCFF900GXT.bigWig bigWig (plus strand signal of all reads) 86.6 MB
ENCFF904USC.bam bam (alignments) 4.1 GB
ENCFF907UJJ.tsv tsv (transcript quantifications) 29.8 MB
ENCFF933XIO.bam bam (transcriptome alignments) 4.5 GB
ENCFF937AHT.tsv tsv (gene quantifications) 10.4 MB
ENCFF961LZU.bigWig bigWig (plus strand signal of all reads) 111.2 MB
ENCFF986NRO.bam bam (alignments) 4.6 GB
ENCSR916WOI ENCSR · via encode_api

shRNA knockdown against TRA2A in K562 cells followed by RNA-seq. (TRA2A-LV11)

Homo sapiens

92 data files
FileTypeSize
ENCFF029KLT.bam bam (alignments) 2.4 GB
ENCFF038MAH.bam bam (transcriptome alignments) 4.4 GB
ENCFF049BZG.bigWig bigWig (plus strand signal of unique reads) 92.7 MB
ENCFF059ZXO.tar tar (differential splicing quantifications) 15.5 MB
ENCFF061HQW.bigWig bigWig (plus strand signal of all reads) 94.4 MB
ENCFF105SBP.bigWig bigWig (plus strand signal of unique reads) 92.2 MB
ENCFF120IKS.bam bam (alignments) 3.7 GB
ENCFF128KRR.bam bam (transcriptome alignments) 4.4 GB
ENCFF141WKT.bigWig bigWig (plus strand signal of all reads) 82.8 MB
ENCFF145USY.tsv tsv (transcript quantifications) 24.9 MB
ENCFF154PED.tar tar (differential splicing quantifications) 4.0 MB
ENCFF170WPU.bigWig bigWig (minus strand signal of all reads) 79.7 MB
ENCFF178YBK.bigWig bigWig (plus strand signal of all reads) 104.8 MB
ENCFF182HOX.bigWig bigWig (plus strand signal of unique reads) 83.8 MB
ENCFF182KSS.bigWig bigWig (minus strand signal of all reads) 91.8 MB
ENCFF184QGJ.tar tar (differential splicing quantifications) 3.4 MB
ENCFF194NKK.tsv tsv (gene quantifications) 9.1 MB
ENCFF211MWT.bigWig bigWig (minus strand signal of all reads) 81.1 MB
ENCFF223PSN.bigWig bigWig (minus strand signal of all reads) 93.0 MB
ENCFF236QUB.bigWig bigWig (minus strand signal of unique reads) 81.5 MB
ENCFF241ZQM.bigWig bigWig (minus strand signal of unique reads) 78.1 MB
ENCFF259UBQ.bigWig bigWig (plus strand signal of all reads) 104.0 MB
ENCFF274TYQ.tsv tsv (transcript quantifications) 27.4 MB
ENCFF301YEK.bigWig bigWig (plus strand signal of unique reads) 83.2 MB
ENCFF309QZY.bigWig bigWig (minus strand signal of unique reads) 82.9 MB
ENCFF312JCT.bigWig bigWig (minus strand signal of unique reads) 90.4 MB
ENCFF332JDP.bigWig bigWig (plus strand signal of all reads) 77.5 MB
ENCFF337MIF.bam bam (alignments) 3.3 GB
ENCFF337ONL.tsv tsv (differential expression quantifications) 4.2 MB
ENCFF340MAX.tsv tsv (gene quantifications) 9.4 MB
ENCFF343VRH.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF410VZU.bigWig bigWig (minus strand signal of unique reads) 89.8 MB
ENCFF415NNW.bigWig bigWig (minus strand signal of unique reads) 74.8 MB
ENCFF443AJX.bam bam (alignments) 3.9 GB
ENCFF453LCB.bigWig bigWig (plus strand signal of all reads) 90.7 MB
ENCFF459VNG.bigWig bigWig (plus strand signal of unique reads) 84.5 MB
ENCFF466TXI.bigWig bigWig (minus strand signal of all reads) 89.4 MB
ENCFF468PCV.bam bam (alignments) 2.9 GB
ENCFF476HUL.tsv tsv (transcript quantifications) 25.3 MB
ENCFF480MFX.tsv tsv (gene quantifications) 10.4 MB
ENCFF482LOQ.bigWig bigWig (minus strand signal of all reads) 89.8 MB
ENCFF494ISE.bigWig bigWig (minus strand signal of all reads) 75.9 MB
ENCFF497GZB.bam bam (alignments) 2.4 GB
ENCFF511YAQ.tsv tsv (transcript quantifications) 24.9 MB
ENCFF517ITZ.bigWig bigWig (plus strand signal of all reads) 91.6 MB
ENCFF517KFU.tsv tsv (gene quantifications) 9.1 MB
ENCFF517MRR.tsv tsv (transcript quantifications) 25.3 MB
ENCFF523XON.fastq fastq (reads) 1.7 GB
ENCFF524JZM.bam bam (transcriptome alignments) 5.2 GB
ENCFF529CCA.bam bam (transcriptome alignments) 3.7 GB
ENCFF529ZHW.bam bam (alignments) 2.9 GB
ENCFF536JQT.tsv tsv (gene quantifications) 10.4 MB
ENCFF540LAK.bigWig bigWig (plus strand signal of all reads) 93.2 MB
ENCFF544IOD.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF545PUK.tsv tsv (differential expression quantifications) 1.6 MB
ENCFF561HRJ.bigWig bigWig (minus strand signal of all reads) 103.4 MB
ENCFF564BFW.bam bam (alignments) 3.3 GB
ENCFF573OGK.bigWig bigWig (minus strand signal of all reads) 103.4 MB
ENCFF579ESO.tsv tsv (transcript quantifications) 27.4 MB
ENCFF581HCR.bigWig bigWig (minus strand signal of all reads) 85.7 MB
ENCFF581ZDQ.bigWig bigWig (minus strand signal of unique reads) 70.1 MB
ENCFF605PQB.bam bam (transcriptome alignments) 3.7 GB
ENCFF609PLL.fastq fastq (reads) 1.7 GB
ENCFF660PCY.fastq fastq (reads) 2.1 GB
ENCFF661OLP.bigWig bigWig (minus strand signal of unique reads) 81.4 MB
ENCFF671VSG.bam bam (alignments) 2.4 GB
ENCFF691IVU.bigWig bigWig (minus strand signal of all reads) 102.5 MB
ENCFF698NWG.tsv tsv (gene quantifications) 9.5 MB
ENCFF725LVR.bigWig bigWig (plus strand signal of unique reads) 76.3 MB
ENCFF738LAZ.bigWig bigWig (plus strand signal of all reads) 81.0 MB
ENCFF750GEN.bigWig bigWig (minus strand signal of all reads) 93.0 MB
ENCFF753AWD.bigWig bigWig (minus strand signal of unique reads) 80.8 MB
ENCFF805KRF.bigWig bigWig (plus strand signal of unique reads) 83.7 MB
ENCFF806MGO.bigWig bigWig (minus strand signal of unique reads) 74.4 MB
ENCFF813IZJ.bam bam (transcriptome alignments) 4.4 GB
ENCFF814TBD.bigWig bigWig (plus strand signal of unique reads) 72.3 MB
ENCFF818OLL.bigWig bigWig (plus strand signal of unique reads) 84.9 MB
ENCFF831PZR.bam bam (alignments) 2.9 GB
ENCFF848GGX.tsv tsv (transcript quantifications) 29.8 MB
ENCFF863TVH.tsv tsv (differential expression quantifications) 5.4 MB
ENCFF867ACA.bigWig bigWig (plus strand signal of unique reads) 80.4 MB
ENCFF872XVJ.bigWig bigWig (plus strand signal of all reads) 87.4 MB
ENCFF877QCY.bigWig bigWig (plus strand signal of unique reads) 77.0 MB
ENCFF886WUY.bigWig bigWig (minus strand signal of unique reads) 89.9 MB
ENCFF898KOV.bigWig bigWig (minus strand signal of unique reads) 82.1 MB
ENCFF911MRV.bigWig bigWig (plus strand signal of all reads) 94.4 MB
ENCFF915YWF.bam bam (alignments) 3.9 GB
ENCFF916CIH.bigWig bigWig (plus strand signal of all reads) 104.8 MB
ENCFF929GWU.tsv tsv (transcript quantifications) 29.8 MB
ENCFF945WRF.fastq fastq (reads) 2.0 GB
ENCFF995OUG.bam bam (alignments) 3.1 GB
ENCFF999INJ.bigWig bigWig (plus strand signal of unique reads) 92.2 MB
ENCSR246SOU ENCSR · via encode_api

shRNA knockdown against G3BP2 in K562 cells followed by RNA-seq. (G3BP2-LV08)

Homo sapiens

92 data files
FileTypeSize
ENCFF002IUU.bigWig bigWig (plus strand signal of unique reads) 79.9 MB
ENCFF043NCY.bam bam (transcriptome alignments) 4.0 GB
ENCFF059ZHP.tsv tsv (gene quantifications) 9.1 MB
ENCFF074HSL.bigWig bigWig (minus strand signal of unique reads) 73.2 MB
ENCFF074TEZ.tsv tsv (gene quantifications) 10.4 MB
ENCFF081UVI.bigWig bigWig (minus strand signal of unique reads) 68.6 MB
ENCFF095ZFB.bigWig bigWig (plus strand signal of all reads) 81.7 MB
ENCFF110IRP.bam bam (transcriptome alignments) 4.3 GB
ENCFF122WAH.bigWig bigWig (plus strand signal of all reads) 81.9 MB
ENCFF126APK.bigWig bigWig (minus strand signal of unique reads) 72.9 MB
ENCFF132SHU.bam bam (alignments) 3.7 GB
ENCFF143BIH.bigWig bigWig (minus strand signal of all reads) 74.4 MB
ENCFF162CUU.bigWig bigWig (minus strand signal of unique reads) 72.5 MB
ENCFF166URD.tar tar (differential splicing quantifications) 3.3 MB
ENCFF174VSW.bam bam (alignments) 3.7 GB
ENCFF197XAU.bam bam (alignments) 3.4 GB
ENCFF206YEM.tsv tsv (transcript quantifications) 29.8 MB
ENCFF215PHL.tsv tsv (gene quantifications) 9.4 MB
ENCFF223WTJ.bigWig bigWig (minus strand signal of unique reads) 69.6 MB
ENCFF229WEU.bigWig bigWig (plus strand signal of all reads) 83.9 MB
ENCFF242NPM.bigWig bigWig (minus strand signal of all reads) 82.8 MB
ENCFF247YPX.bigWig bigWig (minus strand signal of unique reads) 77.8 MB
ENCFF260KSI.bigWig bigWig (plus strand signal of all reads) 83.9 MB
ENCFF269EFB.bigWig bigWig (plus strand signal of unique reads) 74.4 MB
ENCFF273RHK.tsv tsv (transcript quantifications) 27.1 MB
ENCFF284EPM.tar tar (differential splicing quantifications) 11.8 MB
ENCFF287CDX.bigWig bigWig (plus strand signal of all reads) 90.2 MB
ENCFF292JZV.bigWig bigWig (plus strand signal of all reads) 71.7 MB
ENCFF295YGW.bam bam (alignments) 4.2 GB
ENCFF330DXF.bigWig bigWig (minus strand signal of all reads) 80.8 MB
ENCFF331BIR.tsv tsv (transcript quantifications) 24.9 MB
ENCFF334OYE.bigWig bigWig (minus strand signal of unique reads) 73.2 MB
ENCFF349CFG.tsv tsv (gene quantifications) 9.1 MB
ENCFF352VJC.bigWig bigWig (minus strand signal of unique reads) 64.6 MB
ENCFF372RKP.tsv tsv (transcript quantifications) 27.2 MB
ENCFF389TUW.bigWig bigWig (plus strand signal of unique reads) 76.1 MB
ENCFF392GPF.bam bam (alignments) 4.0 GB
ENCFF393AHU.bigWig bigWig (minus strand signal of unique reads) 69.0 MB
ENCFF399TYA.tsv tsv (differential expression quantifications) 5.4 MB
ENCFF404XRX.tsv tsv (transcript quantifications) 29.8 MB
ENCFF428BVZ.bam bam (transcriptome alignments) 4.9 GB
ENCFF440IPS.bigWig bigWig (plus strand signal of all reads) 76.6 MB
ENCFF440XAD.bigWig bigWig (plus strand signal of unique reads) 70.9 MB
ENCFF442AYV.fastq fastq (reads) 2.0 GB
ENCFF468CYT.bam bam (alignments) 3.7 GB
ENCFF479XPV.bigWig bigWig (plus strand signal of all reads) 77.2 MB
ENCFF483HXJ.tsv tsv (gene quantifications) 10.4 MB
ENCFF496PXK.bam bam (alignments) 3.5 GB
ENCFF514XOK.bam bam (transcriptome alignments) 4.5 GB
ENCFF520ZPY.bigWig bigWig (plus strand signal of unique reads) 75.0 MB
ENCFF527ELU.bigWig bigWig (plus strand signal of all reads) 90.2 MB
ENCFF530PAL.tsv tsv (differential expression quantifications) 2.1 MB
ENCFF550JUJ.tsv tsv (differential expression quantifications) 1.8 MB
ENCFF556XUV.bigWig bigWig (minus strand signal of unique reads) 77.6 MB
ENCFF557RIO.bigWig bigWig (plus strand signal of all reads) 81.9 MB
ENCFF566MPK.fastq fastq (reads) 2.2 GB
ENCFF604OIL.bigWig bigWig (minus strand signal of all reads) 89.1 MB
ENCFF606LWI.bigWig bigWig (minus strand signal of all reads) 82.8 MB
ENCFF609OSZ.bam bam (alignments) 3.1 GB
ENCFF613DPQ.tsv tsv (transcript quantifications) 24.9 MB
ENCFF613IPQ.bigWig bigWig (minus strand signal of all reads) 70.4 MB
ENCFF620SEX.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF623DMO.bigWig bigWig (plus strand signal of unique reads) 79.8 MB
ENCFF661HNF.bigWig bigWig (minus strand signal of all reads) 89.1 MB
ENCFF661IYH.bigWig bigWig (plus strand signal of unique reads) 71.4 MB
ENCFF668JLQ.bigWig bigWig (plus strand signal of unique reads) 74.3 MB
ENCFF673LGY.fastq fastq (reads) 2.0 GB
ENCFF685PCV.bam bam (alignments) 3.1 GB
ENCFF693RQR.tsv tsv (gene quantifications) 9.4 MB
ENCFF712SKJ.bam bam (transcriptome alignments) 4.3 GB
ENCFF719DST.bigWig bigWig (plus strand signal of unique reads) 79.5 MB
ENCFF746QLB.fastq fastq (reads) 2.2 GB
ENCFF748JLY.bam bam (transcriptome alignments) 4.0 GB
ENCFF761DJL.bigWig bigWig (minus strand signal of all reads) 80.9 MB
ENCFF793YXC.bam bam (alignments) 4.2 GB
ENCFF826FBT.bam bam (alignments) 3.1 GB
ENCFF844XJT.bigWig bigWig (plus strand signal of all reads) 89.7 MB
ENCFF847DHE.bigWig bigWig (minus strand signal of all reads) 75.7 MB
ENCFF869JGY.bigWig bigWig (plus strand signal of all reads) 75.3 MB
ENCFF878QCC.bigWig bigWig (plus strand signal of unique reads) 75.1 MB
ENCFF883VWZ.bigWig bigWig (plus strand signal of unique reads) 66.4 MB
ENCFF887EVA.bam bam (alignments) 3.4 GB
ENCFF895QCV.tsv tsv (transcript quantifications) 25.3 MB
ENCFF910NJQ.bigWig bigWig (minus strand signal of unique reads) 78.1 MB
ENCFF917BND.tsv tsv (transcript quantifications) 25.3 MB
ENCFF917JYD.bigWig bigWig (plus strand signal of unique reads) 70.1 MB
ENCFF917YYO.bigWig bigWig (minus strand signal of all reads) 75.2 MB
ENCFF944VXU.tsv tsv (differential expression quantifications) 4.2 MB
ENCFF946QHT.bigWig bigWig (minus strand signal of all reads) 80.1 MB
ENCFF946TMG.tar tar (differential splicing quantifications) 2.8 MB
ENCFF960KLI.bigWig bigWig (minus strand signal of all reads) 88.5 MB
ENCFF966JVL.bigWig bigWig (minus strand signal of unique reads) 72.6 MB
ENCSR119QWQ ENCSR · via encode_api

shRNA knockdown against DDX6 in K562 cells followed by RNA-seq. (DDX6-LV08)

Homo sapiens

92 data files
FileTypeSize
ENCFF010FGY.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF024LLK.bigWig bigWig (minus strand signal of unique reads) 69.5 MB
ENCFF026TQB.tsv tsv (transcript quantifications) 24.9 MB
ENCFF058CGG.tsv tsv (differential expression quantifications) 5.3 MB
ENCFF063GYI.bigWig bigWig (minus strand signal of unique reads) 79.4 MB
ENCFF084DOO.tsv tsv (transcript quantifications) 24.9 MB
ENCFF107QCQ.bigWig bigWig (minus strand signal of all reads) 75.1 MB
ENCFF120NNJ.bigWig bigWig (plus strand signal of all reads) 77.0 MB
ENCFF122SKC.bigWig bigWig (minus strand signal of all reads) 76.9 MB
ENCFF136WVP.bam bam (alignments) 4.2 GB
ENCFF151LMO.bigWig bigWig (plus strand signal of unique reads) 81.5 MB
ENCFF220CUZ.tsv tsv (gene quantifications) 10.4 MB
ENCFF225IBI.tsv tsv (gene quantifications) 10.4 MB
ENCFF229FRE.tsv tsv (transcript quantifications) 27.4 MB
ENCFF235FSQ.bam bam (alignments) 3.5 GB
ENCFF267CQO.bigWig bigWig (minus strand signal of all reads) 78.9 MB
ENCFF289AOU.bigWig bigWig (minus strand signal of unique reads) 69.1 MB
ENCFF303UKI.bigWig bigWig (minus strand signal of unique reads) 73.2 MB
ENCFF322RFN.bam bam (alignments) 3.8 GB
ENCFF346IIK.bigWig bigWig (minus strand signal of all reads) 90.7 MB
ENCFF354QOW.tsv tsv (transcript quantifications) 25.3 MB
ENCFF356APV.bigWig bigWig (plus strand signal of all reads) 87.4 MB
ENCFF364YDQ.tsv tsv (differential expression quantifications) 4.2 MB
ENCFF400UEQ.bigWig bigWig (plus strand signal of all reads) 92.1 MB
ENCFF401AFJ.bigWig bigWig (plus strand signal of unique reads) 77.3 MB
ENCFF402XUP.bam bam (alignments) 4.7 GB
ENCFF405FFM.bigWig bigWig (plus strand signal of unique reads) 77.3 MB
ENCFF423HRB.bigWig bigWig (minus strand signal of all reads) 85.0 MB
ENCFF426UXU.bam bam (alignments) 3.9 GB
ENCFF442IWO.bam bam (transcriptome alignments) 5.0 GB
ENCFF442TZR.bigWig bigWig (plus strand signal of unique reads) 68.6 MB
ENCFF457ZNX.bigWig bigWig (minus strand signal of unique reads) 75.1 MB
ENCFF459GPQ.bigWig bigWig (minus strand signal of all reads) 89.3 MB
ENCFF464INQ.bigWig bigWig (minus strand signal of unique reads) 72.7 MB
ENCFF470GSQ.tsv tsv (gene quantifications) 9.5 MB
ENCFF489FRK.fastq fastq (reads) 2.2 GB
ENCFF497OCB.bigWig bigWig (plus strand signal of all reads) 76.2 MB
ENCFF514XUK.bam bam (alignments) 4.5 GB
ENCFF515STJ.bigWig bigWig (minus strand signal of all reads) 90.7 MB
ENCFF517LSA.bigWig bigWig (plus strand signal of unique reads) 71.7 MB
ENCFF533LSQ.fastq fastq (reads) 2.4 GB
ENCFF541BXX.bigWig bigWig (minus strand signal of unique reads) 69.6 MB
ENCFF542WHD.bigWig bigWig (plus strand signal of unique reads) 81.6 MB
ENCFF543TQD.bigWig bigWig (plus strand signal of unique reads) 71.1 MB
ENCFF546ITJ.tsv tsv (differential expression quantifications) 2.0 MB
ENCFF547IKS.bigWig bigWig (plus strand signal of unique reads) 81.1 MB
ENCFF548SMU.bam bam (alignments) 3.8 GB
ENCFF575TMN.bam bam (transcriptome alignments) 5.2 GB
ENCFF575XDO.tsv tsv (gene quantifications) 9.5 MB
ENCFF580BXZ.bam bam (alignments) 4.2 GB
ENCFF617IYB.bigWig bigWig (minus strand signal of all reads) 75.5 MB
ENCFF642OYI.tar tar (differential splicing quantifications) 3.9 MB
ENCFF646RKY.tsv tsv (gene quantifications) 9.1 MB
ENCFF664IUJ.tar tar (differential splicing quantifications) 3.4 MB
ENCFF667VCC.bam bam (transcriptome alignments) 5.0 GB
ENCFF689CZP.bigWig bigWig (minus strand signal of all reads) 72.9 MB
ENCFF690QVE.bam bam (alignments) 4.7 GB
ENCFF701IQR.bam bam (alignments) 3.5 GB
ENCFF718MSX.bigWig bigWig (minus strand signal of all reads) 86.2 MB
ENCFF724JAV.bam bam (transcriptome alignments) 4.6 GB
ENCFF740HTA.bigWig bigWig (minus strand signal of unique reads) 66.7 MB
ENCFF740MAQ.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF740MTB.fastq fastq (reads) 2.4 GB
ENCFF741LRO.bigWig bigWig (minus strand signal of unique reads) 74.9 MB
ENCFF757HSK.bigWig bigWig (plus strand signal of all reads) 74.2 MB
ENCFF769DDP.bigWig bigWig (plus strand signal of all reads) 81.9 MB
ENCFF773OTT.bigWig bigWig (plus strand signal of unique reads) 74.5 MB
ENCFF797JNB.bigWig bigWig (minus strand signal of unique reads) 79.0 MB
ENCFF806LYF.tsv tsv (transcript quantifications) 29.8 MB
ENCFF806SKJ.fastq fastq (reads) 2.2 GB
ENCFF820GUU.bam bam (alignments) 3.5 GB
ENCFF821DTO.bigWig bigWig (plus strand signal of all reads) 87.4 MB
ENCFF830TTI.bigWig bigWig (plus strand signal of all reads) 80.1 MB
ENCFF835GFE.tsv tsv (gene quantifications) 9.1 MB
ENCFF864ECM.tsv tsv (transcript quantifications) 29.8 MB
ENCFF865AXB.bam bam (transcriptome alignments) 5.6 GB
ENCFF866UZM.bigWig bigWig (minus strand signal of all reads) 80.3 MB
ENCFF870YTW.bigWig bigWig (plus strand signal of all reads) 78.5 MB
ENCFF872FYP.bigWig bigWig (plus strand signal of all reads) 90.7 MB
ENCFF887IPU.bigWig bigWig (plus strand signal of all reads) 86.2 MB
ENCFF897BBT.bigWig bigWig (minus strand signal of unique reads) 75.4 MB
ENCFF912YLF.bigWig bigWig (plus strand signal of unique reads) 75.3 MB
ENCFF920CHQ.bigWig bigWig (minus strand signal of all reads) 86.2 MB
ENCFF923QYI.tsv tsv (transcript quantifications) 27.3 MB
ENCFF940PKI.bigWig bigWig (plus strand signal of all reads) 92.1 MB
ENCFF951AME.tsv tsv (transcript quantifications) 25.3 MB
ENCFF957GEU.bam bam (transcriptome alignments) 4.6 GB
ENCFF963IAQ.tar tar (differential splicing quantifications) 16.2 MB
ENCFF966YBO.bigWig bigWig (plus strand signal of unique reads) 76.8 MB
ENCFF980ZKQ.bigWig bigWig (minus strand signal of unique reads) 79.3 MB
ENCFF986SWL.bigWig bigWig (plus strand signal of unique reads) 71.2 MB
ENCFF997AWJ.bam bam (alignments) 4.1 GB
ENCSR067LLB ENCSR · via encode_api

shRNA knockdown against DDX24 in K562 cells followed by RNA-seq. (DDX24-LV08)

Homo sapiens

92 data files
FileTypeSize
ENCFF006RWK.bigWig bigWig (plus strand signal of unique reads) 96.3 MB
ENCFF014WNM.bigWig bigWig (plus strand signal of all reads) 104.4 MB
ENCFF016KQV.bam bam (alignments) 5.0 GB
ENCFF021BKC.bigWig bigWig (minus strand signal of all reads) 89.9 MB
ENCFF040SZR.bigWig bigWig (plus strand signal of all reads) 93.1 MB
ENCFF059QEE.bigWig bigWig (minus strand signal of all reads) 89.4 MB
ENCFF060HYJ.tsv tsv (transcript quantifications) 29.8 MB
ENCFF071FJN.fastq fastq (reads) 2.6 GB
ENCFF071LVY.tsv tsv (gene quantifications) 9.5 MB
ENCFF076WQQ.bigWig bigWig (minus strand signal of all reads) 102.7 MB
ENCFF077UGN.bigWig bigWig (plus strand signal of unique reads) 89.6 MB
ENCFF084KMK.bam bam (alignments) 4.1 GB
ENCFF099GXT.bigWig bigWig (minus strand signal of all reads) 104.1 MB
ENCFF109YMT.fastq fastq (reads) 2.7 GB
ENCFF113IMW.bigWig bigWig (minus strand signal of unique reads) 93.5 MB
ENCFF154FHO.bigWig bigWig (plus strand signal of all reads) 88.2 MB
ENCFF164JNO.tsv tsv (gene quantifications) 9.5 MB
ENCFF176SVM.bam bam (transcriptome alignments) 5.2 GB
ENCFF213BQA.tsv tsv (transcript quantifications) 24.9 MB
ENCFF229SGG.bigWig bigWig (plus strand signal of all reads) 104.4 MB
ENCFF244XUE.bam bam (alignments) 5.0 GB
ENCFF254CQX.bigWig bigWig (minus strand signal of unique reads) 84.4 MB
ENCFF268QOM.tsv tsv (transcript quantifications) 27.4 MB
ENCFF292DVN.tsv tsv (transcript quantifications) 29.8 MB
ENCFF323OWN.bam bam (alignments) 4.1 GB
ENCFF325OHE.bam bam (alignments) 4.8 GB
ENCFF330NON.bigWig bigWig (plus strand signal of unique reads) 90.5 MB
ENCFF356HLH.bigWig bigWig (plus strand signal of unique reads) 84.4 MB
ENCFF368AJU.tar tar (differential splicing quantifications) 3.3 MB
ENCFF379UDO.tsv tsv (differential expression quantifications) 4.1 MB
ENCFF397IAH.bigWig bigWig (plus strand signal of all reads) 107.9 MB
ENCFF408YBD.bigWig bigWig (plus strand signal of unique reads) 82.0 MB
ENCFF412ZZU.bam bam (transcriptome alignments) 6.2 GB
ENCFF414YXO.bigWig bigWig (minus strand signal of all reads) 106.0 MB
ENCFF416DMF.tsv tsv (gene quantifications) 9.1 MB
ENCFF418XXY.tar tar (differential splicing quantifications) 3.8 MB
ENCFF422AEB.bigWig bigWig (minus strand signal of unique reads) 79.3 MB
ENCFF433AET.bigWig bigWig (plus strand signal of all reads) 95.2 MB
ENCFF440CYA.bigWig bigWig (minus strand signal of unique reads) 83.9 MB
ENCFF475XNG.bigWig bigWig (minus strand signal of unique reads) 93.5 MB
ENCFF477SAK.bigWig bigWig (plus strand signal of all reads) 106.0 MB
ENCFF481OBC.tsv tsv (differential expression quantifications) 2.0 MB
ENCFF517RKO.bigWig bigWig (minus strand signal of all reads) 106.0 MB
ENCFF553HNA.tsv tsv (transcript quantifications) 24.9 MB
ENCFF590VAX.tsv tsv (differential expression quantifications) 1.6 MB
ENCFF594SRQ.bigWig bigWig (plus strand signal of unique reads) 86.3 MB
ENCFF595VGY.tsv tsv (gene quantifications) 10.4 MB
ENCFF598RUC.tsv tsv (gene quantifications) 9.1 MB
ENCFF610RTL.bigWig bigWig (minus strand signal of all reads) 91.0 MB
ENCFF626FFP.bam bam (alignments) 4.3 GB
ENCFF632PLT.bigWig bigWig (minus strand signal of unique reads) 87.6 MB
ENCFF634VZH.bigWig bigWig (plus strand signal of all reads) 107.9 MB
ENCFF640KJR.bigWig bigWig (minus strand signal of all reads) 95.3 MB
ENCFF643RAL.bam bam (transcriptome alignments) 5.5 GB
ENCFF643UFQ.bam bam (alignments) 4.1 GB
ENCFF644GCJ.tsv tsv (gene quantifications) 10.4 MB
ENCFF658QYR.bam bam (alignments) 4.3 GB
ENCFF661TWW.bam bam (alignments) 5.0 GB
ENCFF668CZJ.bigWig bigWig (minus strand signal of all reads) 100.1 MB
ENCFF669SEH.tsv tsv (transcript quantifications) 25.3 MB
ENCFF688RGT.bigWig bigWig (plus strand signal of all reads) 91.4 MB
ENCFF712RUW.bigWig bigWig (plus strand signal of unique reads) 95.2 MB
ENCFF723OMC.bigWig bigWig (plus strand signal of all reads) 101.9 MB
ENCFF728RDN.bam bam (transcriptome alignments) 5.9 GB
ENCFF730BJA.tsv tsv (differential expression quantifications) 5.4 MB
ENCFF776ZKL.bigWig bigWig (minus strand signal of all reads) 102.7 MB
ENCFF798BJM.bigWig bigWig (plus strand signal of unique reads) 92.0 MB
ENCFF801CGH.fastq fastq (reads) 2.7 GB
ENCFF804UUO.bigWig bigWig (plus strand signal of unique reads) 96.3 MB
ENCFF830RWH.tar tar (differential splicing quantifications) 16.3 MB
ENCFF831MAU.bigWig bigWig (minus strand signal of unique reads) 89.4 MB
ENCFF840NSR.tsv tsv (transcript quantifications) 27.3 MB
ENCFF863MLF.bigWig bigWig (plus strand signal of unique reads) 92.0 MB
ENCFF880LPU.bigWig bigWig (minus strand signal of unique reads) 87.0 MB
ENCFF886EZK.bigWig bigWig (minus strand signal of unique reads) 92.2 MB
ENCFF888CFQ.tsv tsv (transcript quantifications) 25.3 MB
ENCFF892BVJ.fastq fastq (reads) 2.6 GB
ENCFF897XML.bigWig bigWig (minus strand signal of all reads) 86.3 MB
ENCFF902VYZ.bam bam (transcriptome alignments) 5.5 GB
ENCFF905WFS.bam bam (alignments) 4.2 GB
ENCFF915RVR.bigWig bigWig (plus strand signal of all reads) 91.5 MB
ENCFF917YBG.bam bam (transcriptome alignments) 5.3 GB
ENCFF929IXG.bam bam (alignments) 5.2 GB
ENCFF930KWT.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF938OGD.bigWig bigWig (plus strand signal of all reads) 97.5 MB
ENCFF940NHP.bigWig bigWig (minus strand signal of all reads) 93.4 MB
ENCFF943BHW.bigWig bigWig (minus strand signal of unique reads) 81.5 MB
ENCFF954BJS.bigWig bigWig (plus strand signal of unique reads) 93.0 MB
ENCFF976AXB.bigWig bigWig (minus strand signal of unique reads) 89.2 MB
ENCFF976NWN.bigWig bigWig (minus strand signal of unique reads) 90.3 MB
ENCFF989AJE.bigWig bigWig (plus strand signal of unique reads) 87.1 MB
ENCFF990XDZ.bam bam (alignments) 5.2 GB
ENCSR079IPT ENCSR · via encode_api

shRNA knockdown against TBRG4 in K562 cells followed by RNA-seq. (TBRG4-LV08)

Homo sapiens

92 data files
FileTypeSize
ENCFF005JTY.tsv tsv (transcript quantifications) 25.3 MB
ENCFF007KOR.bigWig bigWig (minus strand signal of unique reads) 77.8 MB
ENCFF008ZGF.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF011WMA.bigWig bigWig (minus strand signal of unique reads) 82.3 MB
ENCFF017MUK.fastq fastq (reads) 2.3 GB
ENCFF021BQV.tsv tsv (differential expression quantifications) 2.7 MB
ENCFF026TQD.tar tar (differential splicing quantifications) 3.0 MB
ENCFF037LGQ.tar tar (differential splicing quantifications) 3.4 MB
ENCFF042XXC.bigWig bigWig (plus strand signal of all reads) 93.5 MB
ENCFF047QRX.bigWig bigWig (minus strand signal of unique reads) 71.3 MB
ENCFF050ETN.bigWig bigWig (minus strand signal of all reads) 92.1 MB
ENCFF067HDV.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF070ZNX.bam bam (transcriptome alignments) 4.3 GB
ENCFF085XUL.bigWig bigWig (plus strand signal of all reads) 93.5 MB
ENCFF091QWZ.bigWig bigWig (minus strand signal of all reads) 89.8 MB
ENCFF091ZJE.bigWig bigWig (plus strand signal of all reads) 84.9 MB
ENCFF098IMS.bam bam (alignments) 4.5 GB
ENCFF108ABJ.fastq fastq (reads) 2.0 GB
ENCFF128LYW.tsv tsv (transcript quantifications) 24.9 MB
ENCFF138QQH.bigWig bigWig (minus strand signal of all reads) 92.1 MB
ENCFF144CGJ.bigWig bigWig (minus strand signal of unique reads) 86.4 MB
ENCFF149GLX.bigWig bigWig (plus strand signal of unique reads) 89.7 MB
ENCFF168WOM.bigWig bigWig (plus strand signal of unique reads) 80.1 MB
ENCFF173IHE.bam bam (alignments) 4.5 GB
ENCFF195MFO.fastq fastq (reads) 2.4 GB
ENCFF203SIQ.bam bam (alignments) 3.8 GB
ENCFF211KSO.bam bam (alignments) 3.2 GB
ENCFF225JES.bigWig bigWig (minus strand signal of all reads) 98.8 MB
ENCFF231ABP.bigWig bigWig (minus strand signal of unique reads) 87.5 MB
ENCFF249LUO.bigWig bigWig (plus strand signal of all reads) 100.0 MB
ENCFF252ZYN.bigWig bigWig (minus strand signal of all reads) 87.1 MB
ENCFF258PXD.tsv tsv (transcript quantifications) 29.8 MB
ENCFF279PCY.bigWig bigWig (plus strand signal of unique reads) 83.9 MB
ENCFF286RHS.tsv tsv (transcript quantifications) 24.9 MB
ENCFF290RFT.bigWig bigWig (minus strand signal of all reads) 78.3 MB
ENCFF301UNR.bigWig bigWig (plus strand signal of all reads) 88.2 MB
ENCFF313GJU.tsv tsv (differential expression quantifications) 4.1 MB
ENCFF330MPN.bigWig bigWig (plus strand signal of unique reads) 84.2 MB
ENCFF336IUY.bigWig bigWig (plus strand signal of all reads) 80.0 MB
ENCFF341NGU.bam bam (alignments) 4.3 GB
ENCFF359HHV.bigWig bigWig (plus strand signal of unique reads) 77.4 MB
ENCFF359IIY.bigWig bigWig (minus strand signal of all reads) 83.2 MB
ENCFF362MFK.bam bam (transcriptome alignments) 4.5 GB
ENCFF374VZI.bam bam (alignments) 3.7 GB
ENCFF378MNX.bigWig bigWig (minus strand signal of all reads) 91.6 MB
ENCFF398RKA.tsv tsv (gene quantifications) 9.4 MB
ENCFF405QUG.tsv tsv (gene quantifications) 10.4 MB
ENCFF406ZDP.bigWig bigWig (minus strand signal of unique reads) 81.7 MB
ENCFF422AUR.tsv tsv (transcript quantifications) 25.3 MB
ENCFF449KPL.tsv tsv (gene quantifications) 9.1 MB
ENCFF452COZ.bigWig bigWig (minus strand signal of unique reads) 87.6 MB
ENCFF458HVC.bam bam (alignments) 3.1 GB
ENCFF465ASC.bigWig bigWig (minus strand signal of all reads) 98.0 MB
ENCFF484AET.bigWig bigWig (plus strand signal of unique reads) 89.6 MB
ENCFF506SHE.bigWig bigWig (plus strand signal of unique reads) 88.7 MB
ENCFF507GRH.bigWig bigWig (minus strand signal of all reads) 83.4 MB
ENCFF531JMM.bam bam (alignments) 3.7 GB
ENCFF538XNN.tsv tsv (transcript quantifications) 27.3 MB
ENCFF540WDR.bam bam (transcriptome alignments) 3.7 GB
ENCFF550AHW.bigWig bigWig (plus strand signal of all reads) 86.1 MB
ENCFF569ZRF.bam bam (alignments) 3.7 GB
ENCFF629XNI.bigWig bigWig (minus strand signal of unique reads) 77.2 MB
ENCFF650CQR.tsv tsv (transcript quantifications) 29.8 MB
ENCFF667DWB.bam bam (transcriptome alignments) 5.2 GB
ENCFF669DRD.bigWig bigWig (minus strand signal of unique reads) 81.2 MB
ENCFF675RTM.bigWig bigWig (plus strand signal of unique reads) 83.9 MB
ENCFF678TZO.bam bam (transcriptome alignments) 4.6 GB
ENCFF681KLM.bigWig bigWig (plus strand signal of unique reads) 79.3 MB
ENCFF700GUN.bigWig bigWig (minus strand signal of all reads) 98.8 MB
ENCFF710PEV.bigWig bigWig (plus strand signal of unique reads) 73.6 MB
ENCFF723MAG.bigWig bigWig (minus strand signal of unique reads) 75.3 MB
ENCFF761XQL.tsv tsv (differential expression quantifications) 5.4 MB
ENCFF769PRT.bigWig bigWig (minus strand signal of all reads) 84.3 MB
ENCFF783ACV.bam bam (alignments) 3.7 GB
ENCFF787PWV.bam bam (transcriptome alignments) 3.8 GB
ENCFF807AOF.bigWig bigWig (plus strand signal of all reads) 93.1 MB
ENCFF824MUT.tsv tsv (gene quantifications) 10.4 MB
ENCFF829MVS.bigWig bigWig (plus strand signal of all reads) 99.3 MB
ENCFF852DBR.bigWig bigWig (plus strand signal of all reads) 84.6 MB
ENCFF852HJF.tsv tsv (gene quantifications) 9.1 MB
ENCFF887PDR.bam bam (alignments) 3.1 GB
ENCFF892DIU.bigWig bigWig (minus strand signal of unique reads) 81.6 MB
ENCFF912PQR.bigWig bigWig (plus strand signal of all reads) 100.0 MB
ENCFF914JWG.tar tar (differential splicing quantifications) 13.3 MB
ENCFF925ZYY.bigWig bigWig (minus strand signal of unique reads) 81.6 MB
ENCFF931KYD.fastq fastq (reads) 2.0 GB
ENCFF932BMD.tsv tsv (gene quantifications) 9.4 MB
ENCFF950NQG.bam bam (alignments) 3.8 GB
ENCFF953KZM.bigWig bigWig (plus strand signal of unique reads) 84.5 MB
ENCFF962NFS.bigWig bigWig (plus strand signal of all reads) 91.6 MB
ENCFF991KNG.bigWig bigWig (plus strand signal of unique reads) 83.1 MB
ENCFF998EYP.tsv tsv (transcript quantifications) 27.3 MB
ENCSR055HDN ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) pulldown experiment against HNRNPDL

13 data files
FileTypeSize
ENCFF032BNE.fastq fastq (reads) 338.3 MB
ENCFF074YRT.tsv tsv (enrichment) 41.0 KB
ENCFF194JIU.tsv tsv (library fraction) 265.4 KB
ENCFF223UQZ.tsv tsv (enrichment) 10.0 KB
ENCFF495RWY.fastq fastq (reads) 290.9 MB
ENCFF554UMM.tsv tsv (enrichment) 688.0 KB
ENCFF566PVD.fastq fastq (reads) 283.0 MB
ENCFF603UTU.tsv tsv (library fraction) 15.1 KB
ENCFF613XWY.fastq fastq (reads) 282.6 MB
ENCFF615HRC.tsv tsv (library fraction) 1.1 MB
ENCFF683ZMK.tsv tsv (library fraction) 63.9 KB
ENCFF694BLE.fastq fastq (reads) 360.9 MB
ENCFF973JIY.tsv tsv (enrichment) 168.0 KB
ENCSR990LWK ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) input control experiment of RALYL and RBM4

1 data file
FileTypeSize
ENCFF864DRM.fastq fastq (reads) 73.3 MB
ENCSR197LHH ENCSR · via encode_api

eCLIP control experiment on HepG2 against DKC1

Homo sapiens

8 data files
FileTypeSize
ENCFF038LJH.bam bam (alignments) 810.9 MB
ENCFF072TXJ.bigWig bigWig (minus strand signal of unique reads) 33.7 MB
ENCFF144DTF.bigWig bigWig (plus strand signal of unique reads) 35.5 MB
ENCFF248PBA.bigWig bigWig (plus strand signal of unique reads) 34.9 MB
ENCFF734WRT.fastq fastq (reads) 906.1 MB
ENCFF742BDR.bigWig bigWig (minus strand signal of unique reads) 34.3 MB
ENCFF793DFG.fastq fastq (reads) 964.5 MB
ENCFF973XJS.bam bam (alignments) 793.5 MB
ENCSR745BIL ENCSR · via encode_api

eCLIP control experiment on HepG2 against RPS3

Homo sapiens

8 data files
FileTypeSize
ENCFF457ZQN.fastq fastq (reads) 724.9 MB
ENCFF643YNL.bigWig bigWig (plus strand signal of unique reads) 22.3 MB
ENCFF708TVU.bam bam (alignments) 509.4 MB
ENCFF742RVI.bigWig bigWig (plus strand signal of unique reads) 22.8 MB
ENCFF774LCM.bigWig bigWig (minus strand signal of unique reads) 22.3 MB
ENCFF779VXI.fastq fastq (reads) 685.6 MB
ENCFF822KTZ.bigWig bigWig (minus strand signal of unique reads) 21.8 MB
ENCFF905UMJ.bam bam (alignments) 520.0 MB
ENCSR182AEG ENCSR · via encode_api

eCLIP control experiment on HepG2 against AGGF1

Homo sapiens

8 data files
FileTypeSize
ENCFF024AYU.bigWig bigWig (minus strand signal of unique reads) 24.2 MB
ENCFF070DMZ.bam bam (alignments) 527.6 MB
ENCFF249LAM.bigWig bigWig (plus strand signal of unique reads) 25.4 MB
ENCFF360FFH.bigWig bigWig (minus strand signal of unique reads) 24.7 MB
ENCFF506IYH.bam bam (alignments) 516.6 MB
ENCFF782ZJI.fastq fastq (reads) 568.5 MB
ENCFF794KAP.fastq fastq (reads) 606.3 MB
ENCFF827XRY.bigWig bigWig (plus strand signal of unique reads) 25.0 MB
ENCSR438MDN ENCSR · via encode_api

Control shRNA against no target in K562 cells followed by RNA-seq. (NT_BGKLV21-B)

Homo sapiens

84 data files
FileTypeSize
ENCFF013LKP.bigWig bigWig (minus strand signal of unique reads) 82.9 MB
ENCFF034YJI.fastq fastq (reads) 2.2 GB
ENCFF039SRC.bigWig bigWig (minus strand signal of all reads) 100.5 MB
ENCFF051CXY.bam bam (alignments) 3.9 GB
ENCFF073URL.bam bam (transcriptome alignments) 5.6 GB
ENCFF083VFK.bigWig bigWig (plus strand signal of all reads) 101.8 MB
ENCFF084YGC.bam bam (transcriptome alignments) 5.3 GB
ENCFF088UWN.bigWig bigWig (minus strand signal of unique reads) 75.8 MB
ENCFF091ADY.bam bam (alignments) 4.2 GB
ENCFF094PAZ.bam bam (alignments) 3.8 GB
ENCFF096JIT.bigWig bigWig (plus strand signal of unique reads) 78.0 MB
ENCFF115KKF.bigWig bigWig (plus strand signal of all reads) 99.6 MB
ENCFF118YSM.bigWig bigWig (plus strand signal of unique reads) 84.9 MB
ENCFF162PMI.tsv tsv (transcript quantifications) 27.4 MB
ENCFF174WAL.bigWig bigWig (minus strand signal of all reads) 94.0 MB
ENCFF219SMN.bigWig bigWig (minus strand signal of unique reads) 78.5 MB
ENCFF219VKG.tsv tsv (transcript quantifications) 27.4 MB
ENCFF229QIJ.bigWig bigWig (plus strand signal of all reads) 87.1 MB
ENCFF239MNY.bam bam (alignments) 3.1 GB
ENCFF251TEW.bam bam (alignments) 3.1 GB
ENCFF266LOW.tsv tsv (gene quantifications) 10.4 MB
ENCFF269PLB.bigWig bigWig (minus strand signal of all reads) 92.4 MB
ENCFF280DJL.bigWig bigWig (minus strand signal of all reads) 98.2 MB
ENCFF292YLK.fastq fastq (reads) 2.3 GB
ENCFF299HTM.tsv tsv (gene quantifications) 9.1 MB
ENCFF322ZMR.bam bam (alignments) 3.3 GB
ENCFF355OCY.bigWig bigWig (plus strand signal of unique reads) 79.9 MB
ENCFF356OBF.tsv tsv (transcript quantifications) 29.8 MB
ENCFF361PEL.bigWig bigWig (plus strand signal of unique reads) 86.3 MB
ENCFF401EMN.bam bam (transcriptome alignments) 6.4 GB
ENCFF415PNE.bigWig bigWig (plus strand signal of all reads) 93.6 MB
ENCFF437SWV.bigWig bigWig (minus strand signal of all reads) 85.6 MB
ENCFF444GVW.bigWig bigWig (plus strand signal of all reads) 85.3 MB
ENCFF464JBW.bigWig bigWig (plus strand signal of unique reads) 90.3 MB
ENCFF465GFZ.bigWig bigWig (minus strand signal of all reads) 92.4 MB
ENCFF466PDT.bigWig bigWig (plus strand signal of all reads) 95.2 MB
ENCFF472FHL.tsv tsv (gene quantifications) 9.5 MB
ENCFF491IGP.bigWig bigWig (plus strand signal of unique reads) 90.4 MB
ENCFF506MVA.bigWig bigWig (minus strand signal of all reads) 84.2 MB
ENCFF530NEM.bigWig bigWig (plus strand signal of unique reads) 80.2 MB
ENCFF565ENH.tsv tsv (transcript quantifications) 24.9 MB
ENCFF572IML.tsv tsv (transcript quantifications) 25.3 MB
ENCFF575CSU.bigWig bigWig (minus strand signal of unique reads) 82.7 MB
ENCFF590XSZ.bam bam (transcriptome alignments) 5.5 GB
ENCFF591BFL.bigWig bigWig (plus strand signal of all reads) 101.8 MB
ENCFF591XCW.tsv tsv (transcript quantifications) 24.9 MB
ENCFF597ZVP.bam bam (alignments) 3.1 GB
ENCFF598QRT.tsv tsv (gene quantifications) 10.4 MB
ENCFF629XES.fastq fastq (reads) 2.3 GB
ENCFF675QXR.bigWig bigWig (plus strand signal of all reads) 84.1 MB
ENCFF677GXO.tsv tsv (transcript quantifications) 25.3 MB
ENCFF685HVD.bigWig bigWig (plus strand signal of all reads) 94.1 MB
ENCFF691GGD.bigWig bigWig (minus strand signal of all reads) 89.4 MB
ENCFF693VGU.bigWig bigWig (minus strand signal of unique reads) 84.8 MB
ENCFF694PFQ.bigWig bigWig (minus strand signal of unique reads) 82.2 MB
ENCFF699LOO.bam bam (alignments) 4.1 GB
ENCFF731HFC.bigWig bigWig (minus strand signal of unique reads) 88.1 MB
ENCFF737OTU.tsv tsv (gene quantifications) 9.5 MB
ENCFF737XUV.bigWig bigWig (minus strand signal of unique reads) 88.2 MB
ENCFF740QDS.bigWig bigWig (plus strand signal of unique reads) 87.1 MB
ENCFF766BTU.bigWig bigWig (minus strand signal of all reads) 100.4 MB
ENCFF766UDS.bigWig bigWig (plus strand signal of unique reads) 90.3 MB
ENCFF771OAW.bigWig bigWig (plus strand signal of all reads) 95.2 MB
ENCFF774XTS.bigWig bigWig (plus strand signal of unique reads) 84.8 MB
ENCFF775HZV.bam bam (alignments) 4.2 GB
ENCFF776BBM.bam bam (transcriptome alignments) 6.1 GB
ENCFF776LGS.tsv tsv (transcript quantifications) 29.8 MB
ENCFF776UNH.bigWig bigWig (minus strand signal of unique reads) 77.9 MB
ENCFF777DGE.bigWig bigWig (minus strand signal of unique reads) 81.2 MB
ENCFF780SHR.bigWig bigWig (plus strand signal of unique reads) 84.1 MB
ENCFF784MKU.bigWig bigWig (minus strand signal of all reads) 94.1 MB
ENCFF787GBA.bigWig bigWig (plus strand signal of all reads) 91.1 MB
ENCFF802VNT.bam bam (transcriptome alignments) 5.2 GB
ENCFF845QQB.fastq fastq (reads) 2.2 GB
ENCFF855XCL.bam bam (alignments) 3.9 GB
ENCFF872VSV.bigWig bigWig (minus strand signal of all reads) 90.4 MB
ENCFF883PLM.bigWig bigWig (plus strand signal of all reads) 91.6 MB
ENCFF902OXN.bam bam (alignments) 3.3 GB
ENCFF918VZY.bigWig bigWig (minus strand signal of unique reads) 84.4 MB
ENCFF939PHJ.bigWig bigWig (minus strand signal of unique reads) 88.1 MB
ENCFF949STA.bigWig bigWig (minus strand signal of all reads) 82.5 MB
ENCFF956IUU.bigWig bigWig (plus strand signal of unique reads) 83.7 MB
ENCFF961SOT.bam bam (alignments) 3.3 GB
ENCFF973VHI.tsv tsv (gene quantifications) 9.1 MB
ENCSR552NBS ENCSR · via encode_api

RNA-seq on K562 cells treated with an shRNA knockdown against HNRNPA0. (HNRNPA0_BGKLV24_B)

Homo sapiens

92 data files
FileTypeSize
ENCFF021LUC.tsv tsv (transcript quantifications) 27.4 MB
ENCFF024PRW.bigWig bigWig (plus strand signal of unique reads) 93.4 MB
ENCFF025OOW.bigWig bigWig (plus strand signal of all reads) 94.7 MB
ENCFF033NBF.tsv tsv (gene quantifications) 9.1 MB
ENCFF042ZYQ.bigWig bigWig (minus strand signal of all reads) 93.0 MB
ENCFF090ZCY.bigWig bigWig (plus strand signal of unique reads) 92.9 MB
ENCFF111SNR.bigWig bigWig (minus strand signal of unique reads) 95.2 MB
ENCFF111YZU.bigWig bigWig (minus strand signal of unique reads) 91.1 MB
ENCFF133XXL.bigWig bigWig (minus strand signal of all reads) 95.3 MB
ENCFF135GOB.bigWig bigWig (plus strand signal of all reads) 92.2 MB
ENCFF140ZWG.bigWig bigWig (plus strand signal of all reads) 110.1 MB
ENCFF166JNR.bigWig bigWig (plus strand signal of unique reads) 93.6 MB
ENCFF170ETT.tar tar (differential splicing quantifications) 3.7 MB
ENCFF175PLL.tsv tsv (gene quantifications) 9.1 MB
ENCFF189ADW.bam bam (transcriptome alignments) 7.7 GB
ENCFF211SQJ.fastq fastq (reads) 3.6 GB
ENCFF211YJO.bigWig bigWig (minus strand signal of all reads) 93.2 MB
ENCFF231ICO.bam bam (alignments) 5.4 GB
ENCFF238DDC.bigWig bigWig (plus strand signal of all reads) 106.2 MB
ENCFF255WOQ.bigWig bigWig (minus strand signal of all reads) 104.9 MB
ENCFF257KUJ.tsv tsv (differential expression quantifications) 2.0 MB
ENCFF259EPY.bam bam (alignments) 5.8 GB
ENCFF270HUI.tsv tsv (transcript quantifications) 27.4 MB
ENCFF272GRB.bigWig bigWig (minus strand signal of all reads) 103.0 MB
ENCFF278IEI.bigWig bigWig (plus strand signal of unique reads) 97.0 MB
ENCFF288AVW.bigWig bigWig (minus strand signal of all reads) 108.8 MB
ENCFF294MAE.bigWig bigWig (plus strand signal of all reads) 106.2 MB
ENCFF307AXO.tsv tsv (gene quantifications) 9.5 MB
ENCFF315BPW.tsv tsv (differential expression quantifications) 4.3 MB
ENCFF319TIG.bigWig bigWig (plus strand signal of all reads) 96.5 MB
ENCFF325QEK.bam bam (alignments) 6.6 GB
ENCFF336QVS.bigWig bigWig (plus strand signal of all reads) 98.7 MB
ENCFF348NNA.bam bam (alignments) 5.7 GB
ENCFF359JZE.bam bam (transcriptome alignments) 8.8 GB
ENCFF363LMQ.fastq fastq (reads) 3.9 GB
ENCFF366YBD.bigWig bigWig (plus strand signal of unique reads) 89.1 MB
ENCFF367NAB.bam bam (alignments) 5.7 GB
ENCFF370MWR.bigWig bigWig (plus strand signal of unique reads) 97.1 MB
ENCFF370OIU.bigWig bigWig (minus strand signal of unique reads) 88.4 MB
ENCFF420ILJ.tsv tsv (gene quantifications) 10.4 MB
ENCFF422NDG.tar tar (differential splicing quantifications) 15.9 MB
ENCFF480TEQ.tsv tsv (transcript quantifications) 29.9 MB
ENCFF481YMR.bigWig bigWig (plus strand signal of all reads) 104.4 MB
ENCFF497SNF.bigWig bigWig (plus strand signal of unique reads) 97.6 MB
ENCFF500KRJ.tsv tsv (transcript quantifications) 25.0 MB
ENCFF503DQY.bigWig bigWig (minus strand signal of all reads) 108.8 MB
ENCFF505IWI.bam bam (alignments) 7.0 GB
ENCFF516RCC.bam bam (transcriptome alignments) 8.3 GB
ENCFF522UER.bigWig bigWig (plus strand signal of all reads) 90.2 MB
ENCFF526MWS.bam bam (alignments) 7.0 GB
ENCFF529LIS.bigWig bigWig (minus strand signal of all reads) 91.0 MB
ENCFF542QGB.bigWig bigWig (plus strand signal of all reads) 94.9 MB
ENCFF585JXD.bigWig bigWig (minus strand signal of unique reads) 84.7 MB
ENCFF590OXH.bam bam (transcriptome alignments) 7.3 GB
ENCFF591XLU.bigWig bigWig (minus strand signal of unique reads) 84.2 MB
ENCFF626EVE.bigWig bigWig (plus strand signal of unique reads) 81.7 MB
ENCFF637HWL.bam bam (alignments) 6.9 GB
ENCFF648CKR.tsv tsv (differential expression quantifications) 2.8 MB
ENCFF654ZHE.tsv tsv (transcript quantifications) 29.9 MB
ENCFF663TNE.bigWig bigWig (minus strand signal of unique reads) 94.8 MB
ENCFF675XIL.tsv tsv (transcript quantifications) 25.4 MB
ENCFF678BZG.bigWig bigWig (minus strand signal of all reads) 97.0 MB
ENCFF722CCF.bigWig bigWig (minus strand signal of all reads) 104.9 MB
ENCFF731WBE.bigWig bigWig (plus strand signal of unique reads) 86.1 MB
ENCFF736ENR.bam bam (alignments) 5.4 GB
ENCFF748ZFR.fastq fastq (reads) 3.7 GB
ENCFF763SSJ.bigWig bigWig (minus strand signal of all reads) 108.4 MB
ENCFF779NFX.fastq fastq (reads) 3.9 GB
ENCFF817AKP.bigWig bigWig (plus strand signal of unique reads) 86.9 MB
ENCFF829HXI.bigWig bigWig (plus strand signal of unique reads) 86.6 MB
ENCFF833ZSR.tsv tsv (transcript quantifications) 25.0 MB
ENCFF838PNB.bigWig bigWig (minus strand signal of unique reads) 84.2 MB
ENCFF844LKH.tsv tsv (gene quantifications) 9.5 MB
ENCFF847JAM.tsv tsv (transcript quantifications) 25.4 MB
ENCFF858YSA.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF860MGG.bam bam (alignments) 6.5 GB
ENCFF879CPC.bigWig bigWig (minus strand signal of unique reads) 86.8 MB
ENCFF890SYO.bam bam (alignments) 5.4 GB
ENCFF909DKW.bigWig bigWig (plus strand signal of all reads) 109.8 MB
ENCFF909GHP.bigWig bigWig (minus strand signal of unique reads) 90.8 MB
ENCFF920IZR.bigWig bigWig (plus strand signal of all reads) 110.1 MB
ENCFF926DRA.bigWig bigWig (minus strand signal of all reads) 88.5 MB
ENCFF929YLE.bam bam (transcriptome alignments) 7.8 GB
ENCFF935TXK.bam bam (alignments) 6.6 GB
ENCFF952PHB.bigWig bigWig (minus strand signal of unique reads) 94.8 MB
ENCFF957GTA.bigWig bigWig (minus strand signal of unique reads) 91.4 MB
ENCFF965LPA.tsv tsv (gene quantifications) 10.4 MB
ENCFF975PFA.tar tar (differential splicing quantifications) 4.5 MB
ENCFF980MYZ.bigWig bigWig (minus strand signal of unique reads) 79.5 MB
ENCFF993FAT.bam bam (transcriptome alignments) 7.3 GB
ENCFF996CVM.bigWig bigWig (plus strand signal of unique reads) 90.4 MB
ENCFF999ZPT.tsv tsv (differential expression quantifications) 5.6 MB
ENCSR995JMS ENCSR · via encode_api

RNA-seq on HepG2 cells treated with an shRNA knockdown against HNRNPM. (HNRNPM_BGHLV30)

Homo sapiens

92 data files
FileTypeSize
ENCFF033KSM.bigWig bigWig (minus strand signal of all reads) 74.4 MB
ENCFF033YIH.bigWig bigWig (minus strand signal of unique reads) 65.7 MB
ENCFF034PBR.bigWig bigWig (plus strand signal of unique reads) 64.5 MB
ENCFF035MZT.bigWig bigWig (minus strand signal of unique reads) 69.8 MB
ENCFF044GAJ.bigWig bigWig (minus strand signal of all reads) 78.7 MB
ENCFF052EFQ.bigWig bigWig (minus strand signal of unique reads) 62.2 MB
ENCFF052UPT.bigWig bigWig (minus strand signal of all reads) 73.8 MB
ENCFF054CJZ.bigWig bigWig (minus strand signal of unique reads) 58.6 MB
ENCFF067ZGY.tsv tsv (gene quantifications) 10.4 MB
ENCFF071WXK.tar tar (differential splicing quantifications) 3.7 MB
ENCFF095QKU.bigWig bigWig (plus strand signal of all reads) 75.2 MB
ENCFF095XRK.bam bam (transcriptome alignments) 5.5 GB
ENCFF107HBR.bam bam (alignments) 4.4 GB
ENCFF119APD.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF144PFW.bam bam (alignments) 3.6 GB
ENCFF148ABF.tsv tsv (gene quantifications) 9.5 MB
ENCFF163VQG.tar tar (differential splicing quantifications) 3.1 MB
ENCFF168RBP.tsv tsv (gene quantifications) 9.1 MB
ENCFF170JUR.bam bam (transcriptome alignments) 5.0 GB
ENCFF179QRX.bam bam (alignments) 4.4 GB
ENCFF199SQF.tsv tsv (transcript quantifications) 29.8 MB
ENCFF208DYL.bigWig bigWig (plus strand signal of all reads) 80.4 MB
ENCFF226GYG.bigWig bigWig (plus strand signal of unique reads) 68.4 MB
ENCFF230STX.fastq fastq (reads) 2.3 GB
ENCFF240HMJ.bam bam (alignments) 4.6 GB
ENCFF273YFY.bigWig bigWig (plus strand signal of all reads) 76.0 MB
ENCFF280RTZ.bam bam (transcriptome alignments) 6.2 GB
ENCFF303DFN.bam bam (alignments) 3.9 GB
ENCFF306TVJ.fastq fastq (reads) 2.6 GB
ENCFF316ZSY.tsv tsv (gene quantifications) 10.4 MB
ENCFF333WZG.tsv tsv (transcript quantifications) 24.9 MB
ENCFF344LHW.bigWig bigWig (plus strand signal of all reads) 76.0 MB
ENCFF348IHW.bam bam (alignments) 3.9 GB
ENCFF372VZN.bam bam (alignments) 4.8 GB
ENCFF373IYV.bigWig bigWig (minus strand signal of unique reads) 60.3 MB
ENCFF386EUE.bigWig bigWig (plus strand signal of unique reads) 72.3 MB
ENCFF387FTF.bigWig bigWig (plus strand signal of all reads) 80.4 MB
ENCFF391PRS.tsv tsv (transcript quantifications) 27.4 MB
ENCFF396UFN.bigWig bigWig (minus strand signal of unique reads) 65.1 MB
ENCFF402ICQ.bigWig bigWig (plus strand signal of all reads) 68.9 MB
ENCFF406QRC.bigWig bigWig (plus strand signal of unique reads) 62.2 MB
ENCFF432PQI.bigWig bigWig (plus strand signal of unique reads) 60.7 MB
ENCFF454VCZ.bigWig bigWig (plus strand signal of unique reads) 68.0 MB
ENCFF466SRI.bam bam (alignments) 4.8 GB
ENCFF495TSD.bigWig bigWig (minus strand signal of unique reads) 69.9 MB
ENCFF495YTD.bam bam (transcriptome alignments) 5.5 GB
ENCFF496VEY.bigWig bigWig (plus strand signal of all reads) 72.6 MB
ENCFF499BMI.bigWig bigWig (minus strand signal of unique reads) 60.0 MB
ENCFF520HAN.bigWig bigWig (plus strand signal of all reads) 64.9 MB
ENCFF528VIV.bigWig bigWig (plus strand signal of all reads) 80.3 MB
ENCFF540TCH.bam bam (transcriptome alignments) 5.0 GB
ENCFF544NVF.bam bam (alignments) 4.0 GB
ENCFF551WNM.bigWig bigWig (plus strand signal of unique reads) 67.3 MB
ENCFF556WZQ.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF558CPX.bigWig bigWig (plus strand signal of unique reads) 72.2 MB
ENCFF569ISE.bigWig bigWig (minus strand signal of all reads) 66.4 MB
ENCFF572WHX.bigWig bigWig (minus strand signal of all reads) 70.8 MB
ENCFF575LTX.bigWig bigWig (minus strand signal of all reads) 67.2 MB
ENCFF578KHA.bigWig bigWig (minus strand signal of unique reads) 64.4 MB
ENCFF592ZZR.fastq fastq (reads) 2.6 GB
ENCFF599GPM.bam bam (transcriptome alignments) 5.6 GB
ENCFF601DUB.bam bam (alignments) 4.3 GB
ENCFF618KZM.bigWig bigWig (plus strand signal of all reads) 68.1 MB
ENCFF624LQC.tar tar (differential splicing quantifications) 15.3 MB
ENCFF634KSW.fastq fastq (reads) 2.4 GB
ENCFF654LPJ.tsv tsv (transcript quantifications) 24.9 MB
ENCFF670THJ.tsv tsv (transcript quantifications) 29.8 MB
ENCFF671ERY.bigWig bigWig (minus strand signal of unique reads) 70.1 MB
ENCFF681OLO.tsv tsv (transcript quantifications) 25.3 MB
ENCFF693NCA.tsv tsv (transcript quantifications) 25.3 MB
ENCFF699EWP.bigWig bigWig (minus strand signal of all reads) 78.7 MB
ENCFF721NYQ.bigWig bigWig (plus strand signal of unique reads) 67.8 MB
ENCFF724IAD.bigWig bigWig (minus strand signal of all reads) 74.4 MB
ENCFF729LLL.bigWig bigWig (minus strand signal of unique reads) 65.9 MB
ENCFF732QES.bigWig bigWig (minus strand signal of unique reads) 66.4 MB
ENCFF752FNY.bigWig bigWig (minus strand signal of all reads) 68.6 MB
ENCFF759AMD.tsv tsv (differential expression quantifications) 1.8 MB
ENCFF767JGJ.bigWig bigWig (plus strand signal of unique reads) 72.0 MB
ENCFF794FWL.bigWig bigWig (plus strand signal of unique reads) 62.0 MB
ENCFF810GZD.bigWig bigWig (plus strand signal of all reads) 66.1 MB
ENCFF827MRQ.bigWig bigWig (minus strand signal of all reads) 63.2 MB
ENCFF833UFJ.bam bam (alignments) 3.6 GB
ENCFF843GRN.tsv tsv (gene quantifications) 9.1 MB
ENCFF852PSH.tsv tsv (differential expression quantifications) 4.3 MB
ENCFF880BXP.bigWig bigWig (minus strand signal of all reads) 78.7 MB
ENCFF881NVG.tsv tsv (differential expression quantifications) 2.0 MB
ENCFF884XHA.bigWig bigWig (minus strand signal of all reads) 64.5 MB
ENCFF894RVZ.bigWig bigWig (plus strand signal of all reads) 70.2 MB
ENCFF900BVH.bigWig bigWig (plus strand signal of unique reads) 66.4 MB
ENCFF951LWX.tsv tsv (transcript quantifications) 27.4 MB
ENCFF984KFO.tsv tsv (gene quantifications) 9.5 MB
ENCFF992AEA.bam bam (alignments) 3.7 GB
ENCSR502NKG ENCSR · via encode_api

eCLIP control experiment on K562 against HLTF

Homo sapiens

8 data files
FileTypeSize
ENCFF065NRW.bigWig bigWig (plus strand signal of unique reads) 5.3 MB
ENCFF089OYZ.fastq fastq (reads) 443.8 MB
ENCFF290SQA.bigWig bigWig (minus strand signal of unique reads) 4.7 MB
ENCFF568BOI.bam bam (alignments) 116.8 MB
ENCFF615TJD.bam bam (alignments) 106.5 MB
ENCFF767CEO.fastq fastq (reads) 521.1 MB
ENCFF936DLT.bigWig bigWig (minus strand signal of unique reads) 5.2 MB
ENCFF998IZZ.bigWig bigWig (plus strand signal of unique reads) 4.9 MB
ENCSR756NPZ ENCSR · via encode_api

eCLIP control experiment on HepG2 against EIF3H

Homo sapiens

8 data files
FileTypeSize
ENCFF183PTD.fastq fastq (reads) 740.0 MB
ENCFF204HYV.bam bam (alignments) 488.0 MB
ENCFF540GQS.bigWig bigWig (minus strand signal of unique reads) 20.5 MB
ENCFF597DVX.bigWig bigWig (plus strand signal of unique reads) 20.6 MB
ENCFF730KZH.bigWig bigWig (plus strand signal of unique reads) 21.2 MB
ENCFF768OOI.bigWig bigWig (minus strand signal of unique reads) 19.9 MB
ENCFF901JEH.fastq fastq (reads) 695.7 MB
ENCFF984JIA.bam bam (alignments) 474.7 MB
ENCSR114XBO ENCSR · via encode_api

eCLIP control experiment on HepG2 against LSM11

Homo sapiens

8 data files
FileTypeSize
ENCFF016TIF.bam bam (alignments) 394.7 MB
ENCFF048KEF.bigWig bigWig (minus strand signal of unique reads) 18.0 MB
ENCFF077TSP.bigWig bigWig (plus strand signal of unique reads) 17.9 MB
ENCFF156KLS.bam bam (alignments) 405.4 MB
ENCFF222QDD.bigWig bigWig (minus strand signal of unique reads) 17.5 MB
ENCFF356BGH.fastq fastq (reads) 681.6 MB
ENCFF369YVX.fastq fastq (reads) 659.0 MB
ENCFF944HQO.bigWig bigWig (plus strand signal of unique reads) 18.4 MB
ENCSR246RRQ ENCSR · via encode_api

Control shRNA against no target in HepG2 cells followed by RNA-seq. (non-target_BGHLV27)

Homo sapiens

84 data files
FileTypeSize
ENCFF007VUA.bigWig bigWig (minus strand signal of unique reads) 83.0 MB
ENCFF018SXZ.bigWig bigWig (plus strand signal of unique reads) 71.6 MB
ENCFF023LEK.tsv tsv (transcript quantifications) 24.9 MB
ENCFF037HIB.tsv tsv (gene quantifications) 9.1 MB
ENCFF037VCS.bam bam (alignments) 4.0 GB
ENCFF040FOB.bigWig bigWig (plus strand signal of all reads) 83.4 MB
ENCFF054TTU.bigWig bigWig (minus strand signal of all reads) 92.8 MB
ENCFF054ZFI.bigWig bigWig (plus strand signal of all reads) 75.9 MB
ENCFF088CBH.bigWig bigWig (plus strand signal of all reads) 83.3 MB
ENCFF093UUE.bam bam (alignments) 4.3 GB
ENCFF103ACT.bigWig bigWig (minus strand signal of unique reads) 70.7 MB
ENCFF125ZMT.bigWig bigWig (minus strand signal of all reads) 86.0 MB
ENCFF137KMW.bigWig bigWig (plus strand signal of unique reads) 75.7 MB
ENCFF139GST.fastq fastq (reads) 2.8 GB
ENCFF143QAT.bam bam (alignments) 5.1 GB
ENCFF183PIJ.bigWig bigWig (plus strand signal of unique reads) 72.1 MB
ENCFF189HBK.bigWig bigWig (minus strand signal of unique reads) 70.3 MB
ENCFF190SRU.tsv tsv (gene quantifications) 9.1 MB
ENCFF191KKV.bigWig bigWig (plus strand signal of unique reads) 68.3 MB
ENCFF263SPL.tsv tsv (transcript quantifications) 27.4 MB
ENCFF268RBN.bigWig bigWig (plus strand signal of unique reads) 79.6 MB
ENCFF290DPQ.tsv tsv (transcript quantifications) 29.8 MB
ENCFF309WPN.bigWig bigWig (plus strand signal of unique reads) 84.7 MB
ENCFF310LVK.bigWig bigWig (plus strand signal of all reads) 83.3 MB
ENCFF327IJC.bigWig bigWig (plus strand signal of all reads) 77.5 MB
ENCFF335CWF.bam bam (transcriptome alignments) 7.5 GB
ENCFF337HHM.bigWig bigWig (plus strand signal of all reads) 93.1 MB
ENCFF338PFD.bam bam (alignments) 4.2 GB
ENCFF348XBK.bam bam (alignments) 4.5 GB
ENCFF356PQM.bigWig bigWig (minus strand signal of unique reads) 82.9 MB
ENCFF370FCU.bigWig bigWig (plus strand signal of unique reads) 75.8 MB
ENCFF380NOH.bigWig bigWig (plus strand signal of unique reads) 77.7 MB
ENCFF416HLA.bigWig bigWig (minus strand signal of all reads) 82.5 MB
ENCFF422HOW.bigWig bigWig (plus strand signal of all reads) 83.2 MB
ENCFF440LOC.bam bam (transcriptome alignments) 5.8 GB
ENCFF442JRN.bigWig bigWig (plus strand signal of unique reads) 75.3 MB
ENCFF448NST.bigWig bigWig (plus strand signal of unique reads) 81.1 MB
ENCFF452HIJ.bigWig bigWig (minus strand signal of all reads) 76.6 MB
ENCFF460WJA.bigWig bigWig (plus strand signal of unique reads) 85.3 MB
ENCFF497QTC.tsv tsv (gene quantifications) 10.4 MB
ENCFF502OAE.bigWig bigWig (minus strand signal of unique reads) 75.9 MB
ENCFF538BMY.tsv tsv (transcript quantifications) 29.8 MB
ENCFF540VRT.bigWig bigWig (plus strand signal of all reads) 72.8 MB
ENCFF552VSQ.bigWig bigWig (minus strand signal of unique reads) 74.3 MB
ENCFF570VDW.tsv tsv (gene quantifications) 9.5 MB
ENCFF585RIS.bam bam (transcriptome alignments) 5.8 GB
ENCFF599WQS.fastq fastq (reads) 2.9 GB
ENCFF608KNB.bigWig bigWig (minus strand signal of unique reads) 83.5 MB
ENCFF609TZV.bigWig bigWig (minus strand signal of unique reads) 73.9 MB
ENCFF617MZZ.bam bam (alignments) 3.6 GB
ENCFF617TFJ.bam bam (alignments) 5.1 GB
ENCFF626ZCX.bigWig bigWig (minus strand signal of all reads) 83.9 MB
ENCFF658SVZ.tsv tsv (gene quantifications) 9.5 MB
ENCFF667DSW.fastq fastq (reads) 2.6 GB
ENCFF667YHS.bigWig bigWig (minus strand signal of unique reads) 74.3 MB
ENCFF700LJE.bigWig bigWig (minus strand signal of all reads) 82.0 MB
ENCFF705VGK.tsv tsv (transcript quantifications) 25.3 MB
ENCFF729IYH.tsv tsv (transcript quantifications) 24.9 MB
ENCFF732TBM.bigWig bigWig (minus strand signal of unique reads) 66.8 MB
ENCFF753ROI.bam bam (transcriptome alignments) 6.6 GB
ENCFF757AZW.bigWig bigWig (plus strand signal of all reads) 93.9 MB
ENCFF776ARB.bam bam (alignments) 4.0 GB
ENCFF794RUS.bam bam (transcriptome alignments) 6.6 GB
ENCFF804AAL.bigWig bigWig (plus strand signal of all reads) 93.9 MB
ENCFF824YDX.bigWig bigWig (minus strand signal of all reads) 92.8 MB
ENCFF829IYK.bigWig bigWig (plus strand signal of all reads) 87.2 MB
ENCFF834ECI.bigWig bigWig (minus strand signal of all reads) 82.4 MB
ENCFF837CPP.bigWig bigWig (minus strand signal of all reads) 71.9 MB
ENCFF837NQJ.bigWig bigWig (plus strand signal of all reads) 84.9 MB
ENCFF848WWJ.bigWig bigWig (minus strand signal of all reads) 75.2 MB
ENCFF870WUB.bam bam (alignments) 4.9 GB
ENCFF880DNL.bam bam (alignments) 4.5 GB
ENCFF891KLY.bigWig bigWig (minus strand signal of all reads) 82.5 MB
ENCFF902APK.tsv tsv (transcript quantifications) 27.3 MB
ENCFF913PIT.bigWig bigWig (minus strand signal of unique reads) 79.4 MB
ENCFF939JUI.bam bam (alignments) 3.7 GB
ENCFF941VGA.tsv tsv (transcript quantifications) 25.3 MB
ENCFF942EUY.bigWig bigWig (plus strand signal of unique reads) 84.7 MB
ENCFF947WNB.bam bam (transcriptome alignments) 6.6 GB
ENCFF951KIC.bigWig bigWig (minus strand signal of unique reads) 78.0 MB
ENCFF963KVV.fastq fastq (reads) 2.5 GB
ENCFF975SQY.bam bam (alignments) 3.6 GB
ENCFF979PMT.bigWig bigWig (minus strand signal of all reads) 92.2 MB
ENCFF997JJB.tsv tsv (gene quantifications) 10.4 MB
ENCSR155EZL ENCSR · via encode_api

RNA-seq on K562 cells treated with an shRNA knockdown against DDX47. (DDX47_BGKLV25)

Homo sapiens

92 data files
FileTypeSize
ENCFF027DYL.bigWig bigWig (plus strand signal of all reads) 104.4 MB
ENCFF029REG.bigWig bigWig (plus strand signal of unique reads) 80.5 MB
ENCFF030COQ.tsv tsv (differential expression quantifications) 2.0 MB
ENCFF054BGK.bam bam (alignments) 5.6 GB
ENCFF100XTJ.bigWig bigWig (minus strand signal of unique reads) 91.1 MB
ENCFF122QIO.bigWig bigWig (plus strand signal of unique reads) 102.5 MB
ENCFF123LGB.bigWig bigWig (minus strand signal of all reads) 86.8 MB
ENCFF135OFX.tsv tsv (transcript quantifications) 29.8 MB
ENCFF138UAP.tsv tsv (gene quantifications) 10.4 MB
ENCFF140VDT.bam bam (alignments) 5.6 GB
ENCFF142IWW.tar tar (differential splicing quantifications) 4.7 MB
ENCFF145BTO.bigWig bigWig (minus strand signal of unique reads) 87.4 MB
ENCFF154PAB.bigWig bigWig (minus strand signal of unique reads) 100.9 MB
ENCFF200WGI.bigWig bigWig (plus strand signal of all reads) 106.0 MB
ENCFF201MQW.bigWig bigWig (minus strand signal of all reads) 104.9 MB
ENCFF205TPG.tsv tsv (differential expression quantifications) 3.0 MB
ENCFF217CYB.bam bam (alignments) 8.4 GB
ENCFF235KKF.fastq fastq (reads) 3.6 GB
ENCFF258ZVA.bigWig bigWig (plus strand signal of unique reads) 102.9 MB
ENCFF262MBM.tsv tsv (transcript quantifications) 27.5 MB
ENCFF267VWM.bigWig bigWig (plus strand signal of unique reads) 93.1 MB
ENCFF272CEY.bam bam (transcriptome alignments) 7.3 GB
ENCFF288FAW.tsv tsv (transcript quantifications) 29.9 MB
ENCFF295XHK.bam bam (transcriptome alignments) 9.2 GB
ENCFF298AID.bigWig bigWig (minus strand signal of unique reads) 78.4 MB
ENCFF303YWH.bigWig bigWig (minus strand signal of all reads) 88.9 MB
ENCFF310ERH.bam bam (alignments) 5.6 GB
ENCFF311NGK.bigWig bigWig (minus strand signal of unique reads) 100.4 MB
ENCFF317WDD.bigWig bigWig (minus strand signal of all reads) 115.6 MB
ENCFF323NXS.fastq fastq (reads) 3.5 GB
ENCFF368LBP.tsv tsv (transcript quantifications) 24.9 MB
ENCFF368UVX.bigWig bigWig (plus strand signal of unique reads) 102.3 MB
ENCFF386KED.bam bam (alignments) 6.9 GB
ENCFF393DKC.bigWig bigWig (minus strand signal of all reads) 86.3 MB
ENCFF402FGF.bam bam (alignments) 6.7 GB
ENCFF404KTM.bigWig bigWig (plus strand signal of unique reads) 90.4 MB
ENCFF405XJG.tsv tsv (transcript quantifications) 27.5 MB
ENCFF416TPI.bigWig bigWig (minus strand signal of unique reads) 100.3 MB
ENCFF425EJP.tsv tsv (gene quantifications) 9.1 MB
ENCFF441KAJ.bigWig bigWig (minus strand signal of unique reads) 91.3 MB
ENCFF453XAT.bam bam (alignments) 8.3 GB
ENCFF476MKE.bigWig bigWig (minus strand signal of all reads) 115.6 MB
ENCFF478AKH.bigWig bigWig (minus strand signal of unique reads) 80.0 MB
ENCFF494RMO.bigWig bigWig (minus strand signal of unique reads) 80.5 MB
ENCFF495WSX.bigWig bigWig (minus strand signal of unique reads) 90.7 MB
ENCFF513UWR.bam bam (alignments) 6.9 GB
ENCFF517GPQ.bigWig bigWig (plus strand signal of all reads) 116.8 MB
ENCFF529CRN.fastq fastq (reads) 4.4 GB
ENCFF543JWT.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF544ZZE.bigWig bigWig (minus strand signal of all reads) 97.1 MB
ENCFF576FXK.bigWig bigWig (plus strand signal of all reads) 90.2 MB
ENCFF587FUZ.tsv tsv (gene quantifications) 9.1 MB
ENCFF594FOZ.tsv tsv (gene quantifications) 9.5 MB
ENCFF602IWF.tsv tsv (gene quantifications) 9.5 MB
ENCFF607HBC.bigWig bigWig (plus strand signal of all reads) 96.5 MB
ENCFF609JNE.tsv tsv (transcript quantifications) 24.9 MB
ENCFF625CKI.bam bam (alignments) 6.8 GB
ENCFF627VDV.bam bam (alignments) 8.4 GB
ENCFF633PHC.bigWig bigWig (plus strand signal of unique reads) 82.5 MB
ENCFF633UWJ.bigWig bigWig (plus strand signal of all reads) 87.8 MB
ENCFF648VAK.bigWig bigWig (plus strand signal of all reads) 98.7 MB
ENCFF653MNK.bam bam (alignments) 6.8 GB
ENCFF655XTF.bam bam (alignments) 6.9 GB
ENCFF676WYE.bam bam (transcriptome alignments) 8.2 GB
ENCFF684UTQ.bigWig bigWig (plus strand signal of unique reads) 81.6 MB
ENCFF689RTV.bigWig bigWig (minus strand signal of all reads) 103.4 MB
ENCFF691ZDJ.tsv tsv (gene quantifications) 10.4 MB
ENCFF694TAG.bigWig bigWig (minus strand signal of unique reads) 89.1 MB
ENCFF715PSI.bigWig bigWig (plus strand signal of all reads) 106.0 MB
ENCFF721XGK.bigWig bigWig (plus strand signal of unique reads) 91.3 MB
ENCFF733NTH.bigWig bigWig (minus strand signal of all reads) 104.9 MB
ENCFF739XNW.bigWig bigWig (minus strand signal of unique reads) 88.6 MB
ENCFF739XTZ.bigWig bigWig (plus strand signal of all reads) 115.8 MB
ENCFF744VWP.bam bam (transcriptome alignments) 10.3 GB
ENCFF755ZHJ.bigWig bigWig (plus strand signal of unique reads) 92.6 MB
ENCFF791IHL.tar tar (differential splicing quantifications) 17.3 MB
ENCFF797TKX.tsv tsv (differential expression quantifications) 4.5 MB
ENCFF801RVA.fastq fastq (reads) 4.5 GB
ENCFF837WZN.tar tar (differential splicing quantifications) 5.9 MB
ENCFF866BSK.bigWig bigWig (minus strand signal of all reads) 95.3 MB
ENCFF888IEY.bigWig bigWig (plus strand signal of all reads) 97.2 MB
ENCFF926CXI.bigWig bigWig (plus strand signal of all reads) 87.5 MB
ENCFF927BKH.bigWig bigWig (minus strand signal of all reads) 114.7 MB
ENCFF942CFP.bigWig bigWig (plus strand signal of unique reads) 89.6 MB
ENCFF948SKU.tsv tsv (transcript quantifications) 25.3 MB
ENCFF953WTO.bigWig bigWig (plus strand signal of all reads) 116.8 MB
ENCFF962ENL.bam bam (transcriptome alignments) 7.3 GB
ENCFF973SIN.bigWig bigWig (minus strand signal of all reads) 95.5 MB
ENCFF978YLN.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF987WJH.bigWig bigWig (plus strand signal of unique reads) 93.1 MB
ENCFF990DPH.tsv tsv (transcript quantifications) 25.4 MB
ENCFF990XKL.bam bam (transcriptome alignments) 9.1 GB
ENCSR927TSP ENCSR · via encode_api

RNA-seq on K562 cells treated with an shRNA knockdown against TIAL1. (TIAL1_BGKLV21)

Homo sapiens

92 data files
FileTypeSize
ENCFF011TBV.bigWig bigWig (plus strand signal of all reads) 59.7 MB
ENCFF016QTK.bam bam (alignments) 2.7 GB
ENCFF041HBJ.bigWig bigWig (minus strand signal of all reads) 72.0 MB
ENCFF047KYL.tar tar (differential splicing quantifications) 3.0 MB
ENCFF057FXC.bam bam (alignments) 2.7 GB
ENCFF057OPR.tsv tsv (gene quantifications) 10.4 MB
ENCFF067KLM.bigWig bigWig (plus strand signal of unique reads) 65.5 MB
ENCFF083VZY.bigWig bigWig (plus strand signal of all reads) 65.3 MB
ENCFF108BUG.bam bam (transcriptome alignments) 3.6 GB
ENCFF119CLC.tsv tsv (gene quantifications) 9.4 MB
ENCFF131HRP.bigWig bigWig (plus strand signal of all reads) 65.9 MB
ENCFF136XPX.bam bam (transcriptome alignments) 3.6 GB
ENCFF158WCI.tar tar (differential splicing quantifications) 13.8 MB
ENCFF160VUJ.bigWig bigWig (minus strand signal of all reads) 73.0 MB
ENCFF168FKV.bigWig bigWig (plus strand signal of unique reads) 64.8 MB
ENCFF172DJH.bigWig bigWig (minus strand signal of all reads) 59.0 MB
ENCFF174TMY.bigWig bigWig (minus strand signal of unique reads) 57.1 MB
ENCFF176KYA.bam bam (alignments) 3.2 GB
ENCFF180NLB.tsv tsv (transcript quantifications) 29.8 MB
ENCFF181AVB.bigWig bigWig (plus strand signal of unique reads) 61.7 MB
ENCFF190HQJ.bigWig bigWig (minus strand signal of all reads) 72.8 MB
ENCFF210WAU.bigWig bigWig (plus strand signal of unique reads) 58.6 MB
ENCFF215AOP.bigWig bigWig (minus strand signal of unique reads) 64.0 MB
ENCFF215BRZ.bigWig bigWig (minus strand signal of all reads) 64.5 MB
ENCFF219OBZ.tsv tsv (gene quantifications) 9.1 MB
ENCFF237HEI.tsv tsv (gene quantifications) 10.4 MB
ENCFF255FGS.bigWig bigWig (plus strand signal of all reads) 72.5 MB
ENCFF263ZEM.bigWig bigWig (plus strand signal of all reads) 56.2 MB
ENCFF264FSQ.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF267TFH.bam bam (alignments) 3.1 GB
ENCFF286CVH.bigWig bigWig (plus strand signal of unique reads) 56.4 MB
ENCFF287AZV.bigWig bigWig (minus strand signal of all reads) 66.1 MB
ENCFF314JCM.bam bam (alignments) 3.1 GB
ENCFF316ZMV.bigWig bigWig (plus strand signal of all reads) 60.1 MB
ENCFF334WAL.bigWig bigWig (minus strand signal of unique reads) 63.1 MB
ENCFF336BSH.bam bam (transcriptome alignments) 3.6 GB
ENCFF353SRM.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF362ORG.bam bam (transcriptome alignments) 4.0 GB
ENCFF363YNI.bigWig bigWig (plus strand signal of unique reads) 65.0 MB
ENCFF403HYU.bigWig bigWig (minus strand signal of unique reads) 63.5 MB
ENCFF435QCO.tar tar (differential splicing quantifications) 3.6 MB
ENCFF437OOS.bam bam (alignments) 2.7 GB
ENCFF439QDE.bigWig bigWig (minus strand signal of unique reads) 57.6 MB
ENCFF441DOL.bigWig bigWig (plus strand signal of all reads) 71.6 MB
ENCFF443RAX.bigWig bigWig (plus strand signal of unique reads) 52.4 MB
ENCFF461ITS.tsv tsv (transcript quantifications) 24.9 MB
ENCFF478GVC.bigWig bigWig (minus strand signal of unique reads) 59.9 MB
ENCFF490MKX.bam bam (alignments) 2.7 GB
ENCFF494MZH.bigWig bigWig (minus strand signal of all reads) 66.1 MB
ENCFF568PXX.bigWig bigWig (minus strand signal of unique reads) 60.4 MB
ENCFF575FCS.bigWig bigWig (minus strand signal of all reads) 55.2 MB
ENCFF577HJP.bigWig bigWig (plus strand signal of unique reads) 59.6 MB
ENCFF582JZO.tsv tsv (gene quantifications) 9.1 MB
ENCFF617OJI.bigWig bigWig (plus strand signal of all reads) 66.9 MB
ENCFF624QXA.bigWig bigWig (minus strand signal of all reads) 66.1 MB
ENCFF631FWT.bigWig bigWig (plus strand signal of all reads) 72.3 MB
ENCFF634VMZ.tsv tsv (transcript quantifications) 29.8 MB
ENCFF636ZSC.bigWig bigWig (minus strand signal of all reads) 66.3 MB
ENCFF637CYG.fastq fastq (reads) 1.6 GB
ENCFF640OLN.fastq fastq (reads) 1.8 GB
ENCFF642GOZ.bam bam (transcriptome alignments) 3.6 GB
ENCFF644YHU.tsv tsv (transcript quantifications) 25.3 MB
ENCFF664IIM.tsv tsv (gene quantifications) 9.4 MB
ENCFF667EBM.bam bam (alignments) 3.2 GB
ENCFF681IJZ.bigWig bigWig (minus strand signal of unique reads) 56.6 MB
ENCFF682GPU.bigWig bigWig (plus strand signal of unique reads) 56.0 MB
ENCFF694EGD.tsv tsv (transcript quantifications) 27.3 MB
ENCFF708ZHB.bigWig bigWig (plus strand signal of unique reads) 58.9 MB
ENCFF765XMJ.bam bam (transcriptome alignments) 4.1 GB
ENCFF766GCQ.tsv tsv (differential expression quantifications) 4.3 MB
ENCFF767MLM.tsv tsv (transcript quantifications) 24.9 MB
ENCFF769KVU.bigWig bigWig (plus strand signal of unique reads) 58.2 MB
ENCFF777KDF.bigWig bigWig (minus strand signal of all reads) 62.0 MB
ENCFF780RUL.bigWig bigWig (minus strand signal of all reads) 59.0 MB
ENCFF798RBV.bigWig bigWig (plus strand signal of all reads) 67.3 MB
ENCFF819XPE.bigWig bigWig (minus strand signal of unique reads) 51.0 MB
ENCFF833RGN.bigWig bigWig (plus strand signal of all reads) 63.2 MB
ENCFF852JJM.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF854IAX.bigWig bigWig (plus strand signal of unique reads) 61.4 MB
ENCFF860XVB.fastq fastq (reads) 1.8 GB
ENCFF865PZN.bigWig bigWig (plus strand signal of all reads) 66.9 MB
ENCFF886BOS.bigWig bigWig (minus strand signal of unique reads) 58.2 MB
ENCFF891KAB.tsv tsv (transcript quantifications) 25.3 MB
ENCFF897JWA.bam bam (alignments) 2.6 GB
ENCFF905NAV.tsv tsv (differential expression quantifications) 5.5 MB
ENCFF915JAS.bigWig bigWig (minus strand signal of unique reads) 55.0 MB
ENCFF928IHC.tsv tsv (transcript quantifications) 27.3 MB
ENCFF931LJA.bam bam (alignments) 3.1 GB
ENCFF936XHH.fastq fastq (reads) 1.6 GB
ENCFF953IZH.bam bam (alignments) 2.6 GB
ENCFF980RYZ.bigWig bigWig (minus strand signal of unique reads) 54.8 MB
ENCFF981ZYP.bam bam (alignments) 3.2 GB
ENCSR728BOL ENCSR · via encode_api

RNA-seq on HepG2 cells treated with an shRNA knockdown against FASTKD1. (FASTKD1-BGHLV22)

Homo sapiens

92 data files
FileTypeSize
ENCFF008ZJN.bigWig bigWig (plus strand signal of all reads) 74.6 MB
ENCFF011IBG.bigWig bigWig (minus strand signal of unique reads) 70.4 MB
ENCFF030SRI.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF035UAV.bigWig bigWig (plus strand signal of unique reads) 71.8 MB
ENCFF060LVP.bigWig bigWig (plus strand signal of all reads) 71.7 MB
ENCFF073TCM.bam bam (alignments) 3.7 GB
ENCFF073VEN.bigWig bigWig (minus strand signal of all reads) 73.7 MB
ENCFF079CZF.bam bam (transcriptome alignments) 5.1 GB
ENCFF083NXS.bigWig bigWig (plus strand signal of unique reads) 71.0 MB
ENCFF096XOF.bigWig bigWig (minus strand signal of all reads) 77.4 MB
ENCFF099POI.bigWig bigWig (plus strand signal of unique reads) 68.1 MB
ENCFF106UDN.bigWig bigWig (minus strand signal of unique reads) 72.5 MB
ENCFF115NGX.bigWig bigWig (minus strand signal of unique reads) 69.1 MB
ENCFF124CQD.bam bam (alignments) 4.9 GB
ENCFF128TEO.bigWig bigWig (plus strand signal of all reads) 81.6 MB
ENCFF150OFR.bam bam (alignments) 3.8 GB
ENCFF150SWH.bam bam (alignments) 3.7 GB
ENCFF155UTA.bigWig bigWig (plus strand signal of all reads) 71.4 MB
ENCFF186ODH.tar tar (differential splicing quantifications) 14.9 MB
ENCFF191UYV.bigWig bigWig (plus strand signal of unique reads) 63.3 MB
ENCFF198BST.bam bam (alignments) 4.4 GB
ENCFF198VYC.tsv tsv (transcript quantifications) 29.8 MB
ENCFF210AUE.bigWig bigWig (minus strand signal of unique reads) 73.0 MB
ENCFF216OQV.tsv tsv (transcript quantifications) 27.3 MB
ENCFF251CYC.bigWig bigWig (plus strand signal of all reads) 70.5 MB
ENCFF257AHK.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF266JFP.fastq fastq (reads) 2.4 GB
ENCFF266MKF.bigWig bigWig (plus strand signal of all reads) 78.1 MB
ENCFF272HMJ.bigWig bigWig (minus strand signal of unique reads) 70.3 MB
ENCFF301XCB.bigWig bigWig (minus strand signal of unique reads) 61.9 MB
ENCFF304CDG.tar tar (differential splicing quantifications) 2.9 MB
ENCFF304DVV.bigWig bigWig (minus strand signal of all reads) 66.7 MB
ENCFF314KIJ.tsv tsv (gene quantifications) 9.1 MB
ENCFF330EVE.tsv tsv (transcript quantifications) 27.3 MB
ENCFF339FHL.bam bam (transcriptome alignments) 5.7 GB
ENCFF339HQY.bigWig bigWig (minus strand signal of all reads) 80.6 MB
ENCFF353LGV.bam bam (transcriptome alignments) 5.8 GB
ENCFF353RHD.bigWig bigWig (plus strand signal of all reads) 81.6 MB
ENCFF361TDN.tsv tsv (transcript quantifications) 29.8 MB
ENCFF370SHP.bam bam (alignments) 4.9 GB
ENCFF373KTD.bigWig bigWig (minus strand signal of unique reads) 73.0 MB
ENCFF393OPX.bam bam (alignments) 4.3 GB
ENCFF403NFL.bigWig bigWig (minus strand signal of unique reads) 70.4 MB
ENCFF431OZE.bigWig bigWig (minus strand signal of all reads) 78.1 MB
ENCFF433KTP.bigWig bigWig (minus strand signal of unique reads) 65.8 MB
ENCFF436TZZ.bam bam (transcriptome alignments) 5.1 GB
ENCFF447LFW.tsv tsv (gene quantifications) 10.4 MB
ENCFF471KPR.tsv tsv (gene quantifications) 9.4 MB
ENCFF493TJT.bigWig bigWig (minus strand signal of all reads) 80.2 MB
ENCFF506GZX.bigWig bigWig (plus strand signal of all reads) 74.7 MB
ENCFF511IKT.tsv tsv (transcript quantifications) 24.9 MB
ENCFF534JQZ.bigWig bigWig (plus strand signal of unique reads) 74.1 MB
ENCFF541GEY.tsv tsv (gene quantifications) 10.4 MB
ENCFF545NCH.bam bam (alignments) 4.0 GB
ENCFF560ZOU.bam bam (transcriptome alignments) 5.8 GB
ENCFF564ERD.bigWig bigWig (plus strand signal of unique reads) 74.6 MB
ENCFF602TFY.bigWig bigWig (minus strand signal of unique reads) 66.7 MB
ENCFF609APL.bigWig bigWig (plus strand signal of all reads) 78.9 MB
ENCFF609VWA.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF633OGG.bigWig bigWig (plus strand signal of unique reads) 71.7 MB
ENCFF635WLG.tsv tsv (differential expression quantifications) 2.8 MB
ENCFF648JHO.bam bam (alignments) 4.7 GB
ENCFF650BHD.bigWig bigWig (plus strand signal of unique reads) 74.6 MB
ENCFF659UGU.tsv tsv (differential expression quantifications) 4.1 MB
ENCFF673TOB.bam bam (alignments) 4.0 GB
ENCFF675GVZ.bigWig bigWig (minus strand signal of all reads) 73.6 MB
ENCFF700JFC.tsv tsv (transcript quantifications) 25.3 MB
ENCFF701YSX.bam bam (alignments) 4.1 GB
ENCFF704AON.fastq fastq (reads) 2.3 GB
ENCFF710POZ.bigWig bigWig (minus strand signal of all reads) 69.8 MB
ENCFF715QVL.bigWig bigWig (minus strand signal of all reads) 70.8 MB
ENCFF720NGU.tar tar (differential splicing quantifications) 3.4 MB
ENCFF725PRR.bigWig bigWig (minus strand signal of all reads) 70.3 MB
ENCFF727NRB.bigWig bigWig (plus strand signal of all reads) 67.7 MB
ENCFF738FGS.bam bam (transcriptome alignments) 6.5 GB
ENCFF773GOI.fastq fastq (reads) 2.6 GB
ENCFF774EGP.bigWig bigWig (minus strand signal of unique reads) 69.4 MB
ENCFF784ERU.bigWig bigWig (plus strand signal of unique reads) 67.5 MB
ENCFF806SVM.bigWig bigWig (minus strand signal of unique reads) 65.9 MB
ENCFF824AEQ.bam bam (alignments) 4.4 GB
ENCFF838ZKT.bigWig bigWig (plus strand signal of all reads) 78.9 MB
ENCFF842TWQ.tsv tsv (transcript quantifications) 25.3 MB
ENCFF845GIT.bigWig bigWig (plus strand signal of all reads) 81.1 MB
ENCFF858BHK.tsv tsv (gene quantifications) 9.1 MB
ENCFF860HHF.bigWig bigWig (plus strand signal of unique reads) 70.5 MB
ENCFF874SOO.bigWig bigWig (plus strand signal of unique reads) 71.8 MB
ENCFF886OUM.tsv tsv (transcript quantifications) 24.9 MB
ENCFF925AGM.bigWig bigWig (plus strand signal of unique reads) 67.0 MB
ENCFF927HQO.bigWig bigWig (minus strand signal of all reads) 80.6 MB
ENCFF929AUO.tsv tsv (gene quantifications) 9.4 MB
ENCFF943TBF.bigWig bigWig (minus strand signal of all reads) 78.1 MB
ENCFF994OSE.fastq fastq (reads) 2.5 GB
ENCSR141NLX ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) input control experiment of hnRNPD

1 data file
FileTypeSize
ENCFF002DFZ.fastq fastq (reads) 599.5 MB
ENCSR904CJQ ENCSR · via encode_api

shRNA knockdown against U2AF2 in K562 cells followed by RNA-seq. (U2AF2-LV08)

Homo sapiens

92 data files
FileTypeSize
ENCFF005ZNM.bigWig bigWig (minus strand signal of unique reads) 85.7 MB
ENCFF007MLW.bigWig bigWig (plus strand signal of unique reads) 78.3 MB
ENCFF018ROQ.bigWig bigWig (minus strand signal of all reads) 97.8 MB
ENCFF020EZY.bigWig bigWig (minus strand signal of all reads) 93.9 MB
ENCFF020NLV.bigWig bigWig (minus strand signal of all reads) 94.6 MB
ENCFF027ASC.bigWig bigWig (plus strand signal of all reads) 97.7 MB
ENCFF029RPY.bam bam (transcriptome alignments) 4.6 GB
ENCFF037DXI.bam bam (alignments) 3.6 GB
ENCFF048RWS.bigWig bigWig (plus strand signal of all reads) 96.4 MB
ENCFF050XNV.bigWig bigWig (plus strand signal of all reads) 87.4 MB
ENCFF052OTC.bigWig bigWig (plus strand signal of all reads) 81.1 MB
ENCFF055RJW.bam bam (transcriptome alignments) 4.1 GB
ENCFF074AMW.bigWig bigWig (plus strand signal of unique reads) 86.7 MB
ENCFF083DEG.bigWig bigWig (minus strand signal of unique reads) 84.6 MB
ENCFF091GSE.bigWig bigWig (plus strand signal of unique reads) 82.1 MB
ENCFF091ZGT.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF092MNE.tsv tsv (transcript quantifications) 27.3 MB
ENCFF132RUI.tsv tsv (gene quantifications) 10.4 MB
ENCFF155AHS.bigWig bigWig (minus strand signal of unique reads) 81.6 MB
ENCFF158ZML.fastq fastq (reads) 2.3 GB
ENCFF161PFB.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF166VMS.bigWig bigWig (plus strand signal of unique reads) 80.3 MB
ENCFF227ONN.tar tar (differential splicing quantifications) 12.9 MB
ENCFF237ZJD.bigWig bigWig (plus strand signal of unique reads) 75.9 MB
ENCFF238GKI.bigWig bigWig (minus strand signal of unique reads) 84.7 MB
ENCFF257JMN.tsv tsv (gene quantifications) 9.1 MB
ENCFF264UXN.bam bam (alignments) 3.4 GB
ENCFF267YFY.bigWig bigWig (plus strand signal of unique reads) 84.2 MB
ENCFF275AKF.bigWig bigWig (plus strand signal of unique reads) 88.5 MB
ENCFF318PFL.bam bam (alignments) 3.4 GB
ENCFF321LXX.bigWig bigWig (plus strand signal of all reads) 87.7 MB
ENCFF328DCI.bigWig bigWig (minus strand signal of all reads) 84.3 MB
ENCFF355UFN.bam bam (alignments) 3.6 GB
ENCFF364QND.tsv tsv (transcript quantifications) 25.3 MB
ENCFF365VKX.bigWig bigWig (minus strand signal of unique reads) 83.9 MB
ENCFF370RRY.tsv tsv (transcript quantifications) 29.8 MB
ENCFF370TYU.bigWig bigWig (minus strand signal of all reads) 82.5 MB
ENCFF397YUK.bam bam (alignments) 4.3 GB
ENCFF405UKX.tar tar (differential splicing quantifications) 3.6 MB
ENCFF424URS.fastq fastq (reads) 2.2 GB
ENCFF425WYP.bigWig bigWig (plus strand signal of all reads) 96.4 MB
ENCFF431ZYA.bigWig bigWig (minus strand signal of unique reads) 86.0 MB
ENCFF454XHR.tsv tsv (transcript quantifications) 25.3 MB
ENCFF455WNG.tsv tsv (transcript quantifications) 24.9 MB
ENCFF457JLV.tsv tsv (differential expression quantifications) 4.3 MB
ENCFF468ZZD.tar tar (differential splicing quantifications) 4.3 MB
ENCFF476EQO.bigWig bigWig (minus strand signal of all reads) 94.6 MB
ENCFF521PSD.bigWig bigWig (plus strand signal of all reads) 99.5 MB
ENCFF538QBY.bigWig bigWig (plus strand signal of unique reads) 87.2 MB
ENCFF550GXB.fastq fastq (reads) 2.3 GB
ENCFF550SCK.bigWig bigWig (plus strand signal of all reads) 95.6 MB
ENCFF556KBN.bigWig bigWig (plus strand signal of all reads) 89.8 MB
ENCFF559SKE.bigWig bigWig (plus strand signal of unique reads) 87.1 MB
ENCFF577SGC.bigWig bigWig (minus strand signal of all reads) 85.4 MB
ENCFF593VXV.fastq fastq (reads) 2.2 GB
ENCFF594RTW.bigWig bigWig (minus strand signal of unique reads) 86.3 MB
ENCFF597QRJ.bigWig bigWig (minus strand signal of all reads) 86.2 MB
ENCFF605SCV.bigWig bigWig (plus strand signal of all reads) 85.9 MB
ENCFF609FZS.bam bam (alignments) 4.1 GB
ENCFF623WEE.bam bam (transcriptome alignments) 4.0 GB
ENCFF667QFW.bam bam (alignments) 3.6 GB
ENCFF676CZA.bam bam (alignments) 4.0 GB
ENCFF676FAC.bigWig bigWig (minus strand signal of unique reads) 73.4 MB
ENCFF705QYY.bigWig bigWig (minus strand signal of all reads) 87.8 MB
ENCFF719NCX.bigWig bigWig (plus strand signal of unique reads) 82.1 MB
ENCFF726GQO.tsv tsv (gene quantifications) 9.4 MB
ENCFF726MJK.bigWig bigWig (minus strand signal of unique reads) 75.8 MB
ENCFF740NNI.bigWig bigWig (minus strand signal of unique reads) 79.9 MB
ENCFF748VWE.bam bam (alignments) 4.1 GB
ENCFF755VCL.tsv tsv (transcript quantifications) 29.8 MB
ENCFF764AHF.bam bam (alignments) 4.3 GB
ENCFF766SMC.tsv tsv (transcript quantifications) 24.9 MB
ENCFF786OMI.bam bam (transcriptome alignments) 4.9 GB
ENCFF787NND.bam bam (transcriptome alignments) 4.3 GB
ENCFF798NDZ.bigWig bigWig (minus strand signal of unique reads) 78.0 MB
ENCFF819LKR.bigWig bigWig (plus strand signal of all reads) 84.5 MB
ENCFF848QEP.bigWig bigWig (minus strand signal of all reads) 95.9 MB
ENCFF857ZIJ.bigWig bigWig (minus strand signal of unique reads) 79.5 MB
ENCFF858YJX.tsv tsv (differential expression quantifications) 5.4 MB
ENCFF859PPT.bigWig bigWig (minus strand signal of all reads) 97.8 MB
ENCFF861OUZ.bigWig bigWig (minus strand signal of all reads) 79.2 MB
ENCFF874ZJN.bam bam (transcriptome alignments) 4.3 GB
ENCFF898VXO.tsv tsv (gene quantifications) 9.4 MB
ENCFF902XTY.tsv tsv (transcript quantifications) 27.3 MB
ENCFF912WXB.bam bam (alignments) 3.4 GB
ENCFF922YOU.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF927EJA.tsv tsv (gene quantifications) 9.1 MB
ENCFF936LOH.tsv tsv (gene quantifications) 10.4 MB
ENCFF942VXX.bam bam (alignments) 4.2 GB
ENCFF946ZPC.bigWig bigWig (plus strand signal of all reads) 99.5 MB
ENCFF982WWH.bigWig bigWig (plus strand signal of unique reads) 88.9 MB
ENCFF998XRH.bigWig bigWig (plus strand signal of unique reads) 88.2 MB
ENCSR611ZAL ENCSR · via encode_api

shRNA knockdown against TAF15 in K562 cells followed by RNA-seq. (TAF15-LV08)

Homo sapiens

92 data files
FileTypeSize
ENCFF004ERD.bam bam (transcriptome alignments) 3.9 GB
ENCFF044ZZI.bigWig bigWig (minus strand signal of unique reads) 88.6 MB
ENCFF077UEQ.bigWig bigWig (minus strand signal of unique reads) 72.2 MB
ENCFF079WOF.tsv tsv (differential expression quantifications) 2.5 MB
ENCFF088AON.bigWig bigWig (plus strand signal of unique reads) 79.7 MB
ENCFF089WAY.bigWig bigWig (minus strand signal of all reads) 92.0 MB
ENCFF092OIK.bigWig bigWig (plus strand signal of all reads) 95.5 MB
ENCFF101WJU.tsv tsv (gene quantifications) 9.4 MB
ENCFF108NGO.tsv tsv (transcript quantifications) 27.2 MB
ENCFF116KCS.bigWig bigWig (plus strand signal of unique reads) 81.3 MB
ENCFF132HAJ.bigWig bigWig (plus strand signal of unique reads) 86.7 MB
ENCFF140SCQ.bigWig bigWig (plus strand signal of all reads) 101.6 MB
ENCFF151DJX.bam bam (alignments) 4.1 GB
ENCFF182EJK.tsv tsv (gene quantifications) 10.4 MB
ENCFF188VHX.bigWig bigWig (plus strand signal of unique reads) 91.9 MB
ENCFF210UBF.bigWig bigWig (minus strand signal of unique reads) 88.6 MB
ENCFF214JJA.bigWig bigWig (plus strand signal of unique reads) 86.9 MB
ENCFF216YPK.bigWig bigWig (plus strand signal of all reads) 81.0 MB
ENCFF217IVD.bigWig bigWig (minus strand signal of unique reads) 77.7 MB
ENCFF218QWF.tsv tsv (transcript quantifications) 27.3 MB
ENCFF220EIP.bigWig bigWig (minus strand signal of all reads) 79.3 MB
ENCFF229MSJ.bam bam (alignments) 3.2 GB
ENCFF251MZG.tsv tsv (differential expression quantifications) 4.2 MB
ENCFF256UED.bigWig bigWig (plus strand signal of all reads) 102.4 MB
ENCFF278PAB.bigWig bigWig (minus strand signal of all reads) 100.9 MB
ENCFF290QGG.bigWig bigWig (minus strand signal of unique reads) 78.9 MB
ENCFF296ZRK.bigWig bigWig (plus strand signal of all reads) 88.6 MB
ENCFF308WRQ.bigWig bigWig (plus strand signal of all reads) 75.3 MB
ENCFF324FAY.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF325SZT.bigWig bigWig (plus strand signal of all reads) 87.1 MB
ENCFF337CYW.fastq fastq (reads) 2.0 GB
ENCFF357APA.bigWig bigWig (plus strand signal of all reads) 88.6 MB
ENCFF375DLF.tsv tsv (gene quantifications) 9.1 MB
ENCFF389VJB.tsv tsv (transcript quantifications) 29.8 MB
ENCFF404HHT.fastq fastq (reads) 2.1 GB
ENCFF405CGA.bam bam (transcriptome alignments) 3.8 GB
ENCFF409FTS.bam bam (alignments) 3.4 GB
ENCFF414LIO.bigWig bigWig (plus strand signal of unique reads) 92.5 MB
ENCFF415PYD.bigWig bigWig (minus strand signal of all reads) 101.0 MB
ENCFF431MCY.bigWig bigWig (minus strand signal of all reads) 100.1 MB
ENCFF438DFO.bigWig bigWig (plus strand signal of unique reads) 74.9 MB
ENCFF477XFI.tar tar (differential splicing quantifications) 11.9 MB
ENCFF486NLT.bigWig bigWig (minus strand signal of all reads) 87.2 MB
ENCFF493JBR.bigWig bigWig (plus strand signal of unique reads) 69.7 MB
ENCFF510SRD.bam bam (alignments) 3.4 GB
ENCFF518DZX.tsv tsv (transcript quantifications) 24.9 MB
ENCFF528JWM.bigWig bigWig (minus strand signal of all reads) 85.7 MB
ENCFF539FZE.bigWig bigWig (minus strand signal of unique reads) 67.7 MB
ENCFF545NLN.bigWig bigWig (minus strand signal of all reads) 73.6 MB
ENCFF566NRV.bigWig bigWig (minus strand signal of all reads) 87.3 MB
ENCFF569WUQ.bam bam (alignments) 3.4 GB
ENCFF570EGH.bam bam (alignments) 4.1 GB
ENCFF574GZS.bigWig bigWig (minus strand signal of unique reads) 77.5 MB
ENCFF593VYF.bigWig bigWig (plus strand signal of all reads) 102.4 MB
ENCFF604FCM.bigWig bigWig (plus strand signal of all reads) 93.2 MB
ENCFF641VAL.bam bam (transcriptome alignments) 3.9 GB
ENCFF646PMQ.bam bam (transcriptome alignments) 4.3 GB
ENCFF654ESV.bigWig bigWig (minus strand signal of unique reads) 84.4 MB
ENCFF669KZU.bam bam (alignments) 4.0 GB
ENCFF682QQH.bigWig bigWig (plus strand signal of unique reads) 79.7 MB
ENCFF686YUH.bigWig bigWig (plus strand signal of unique reads) 92.5 MB
ENCFF687JUV.tsv tsv (gene quantifications) 9.1 MB
ENCFF702ZFF.tsv tsv (transcript quantifications) 29.8 MB
ENCFF720EJE.bam bam (transcriptome alignments) 4.5 GB
ENCFF722GYT.tsv tsv (transcript quantifications) 24.9 MB
ENCFF749SAN.bigWig bigWig (plus strand signal of unique reads) 75.6 MB
ENCFF756UPV.fastq fastq (reads) 2.0 GB
ENCFF766JDB.bam bam (alignments) 3.8 GB
ENCFF771FTG.bigWig bigWig (plus strand signal of all reads) 87.8 MB
ENCFF773DVX.bigWig bigWig (minus strand signal of unique reads) 87.9 MB
ENCFF790GTW.bigWig bigWig (minus strand signal of unique reads) 84.6 MB
ENCFF817ZBH.bam bam (alignments) 3.1 GB
ENCFF830MAP.tsv tsv (gene quantifications) 9.4 MB
ENCFF835XGX.bigWig bigWig (minus strand signal of all reads) 86.0 MB
ENCFF848XRQ.tsv tsv (transcript quantifications) 25.3 MB
ENCFF852HQQ.bam bam (alignments) 3.8 GB
ENCFF862NET.bam bam (alignments) 3.7 GB
ENCFF863RHZ.bigWig bigWig (minus strand signal of unique reads) 73.1 MB
ENCFF866JYH.fastq fastq (reads) 2.2 GB
ENCFF894DSA.bigWig bigWig (plus strand signal of all reads) 79.8 MB
ENCFF900ITP.bigWig bigWig (minus strand signal of all reads) 78.6 MB
ENCFF902TNS.bigWig bigWig (minus strand signal of unique reads) 76.7 MB
ENCFF911YRE.tar tar (differential splicing quantifications) 3.2 MB
ENCFF921GAI.tsv tsv (transcript quantifications) 25.3 MB
ENCFF940QMC.bam bam (alignments) 3.1 GB
ENCFF952CJX.tar tar (differential splicing quantifications) 2.8 MB
ENCFF960KFJ.bam bam (transcriptome alignments) 3.8 GB
ENCFF960RHH.bigWig bigWig (minus strand signal of all reads) 93.5 MB
ENCFF964AMX.tsv tsv (differential expression quantifications) 5.4 MB
ENCFF975YEK.tsv tsv (gene quantifications) 10.4 MB
ENCFF978DYM.bigWig bigWig (plus strand signal of unique reads) 78.7 MB
ENCFF982ZIY.tsv tsv (differential expression quantifications) 1.7 MB
ENCSR511BNY ENCSR · via encode_api

RNA-seq on K562 cells treated with an shRNA knockdown against FIP1L1. (FIP1L1_BGKLV29)

Homo sapiens

92 data files
FileTypeSize
ENCFF017WTP.tsv tsv (transcript quantifications) 25.4 MB
ENCFF024GTD.bigWig bigWig (plus strand signal of unique reads) 69.1 MB
ENCFF024YVR.bigWig bigWig (minus strand signal of all reads) 75.7 MB
ENCFF039KLY.bigWig bigWig (plus strand signal of unique reads) 68.2 MB
ENCFF043ATB.bam bam (alignments) 3.2 GB
ENCFF061HCZ.bam bam (alignments) 4.0 GB
ENCFF068COB.tar tar (differential splicing quantifications) 4.4 MB
ENCFF081VLE.bam bam (transcriptome alignments) 5.4 GB
ENCFF088XJV.bigWig bigWig (minus strand signal of unique reads) 60.2 MB
ENCFF091OXH.tsv tsv (transcript quantifications) 29.9 MB
ENCFF094DSM.bam bam (alignments) 4.3 GB
ENCFF095RNM.bigWig bigWig (minus strand signal of unique reads) 62.7 MB
ENCFF115WFI.bigWig bigWig (minus strand signal of all reads) 76.7 MB
ENCFF133TGN.bigWig bigWig (minus strand signal of all reads) 75.8 MB
ENCFF163HLP.bam bam (transcriptome alignments) 5.1 GB
ENCFF170NYU.bigWig bigWig (plus strand signal of unique reads) 65.2 MB
ENCFF173DRQ.bigWig bigWig (plus strand signal of unique reads) 62.4 MB
ENCFF181AZX.tsv tsv (gene quantifications) 10.4 MB
ENCFF182BFT.tsv tsv (gene quantifications) 9.5 MB
ENCFF193YMK.bam bam (alignments) 4.3 GB
ENCFF223XQE.bam bam (alignments) 3.9 GB
ENCFF247DVM.bigWig bigWig (minus strand signal of all reads) 68.0 MB
ENCFF252ZKT.fastq fastq (reads) 2.3 GB
ENCFF260HWD.bigWig bigWig (minus strand signal of all reads) 69.5 MB
ENCFF265KIJ.bam bam (transcriptome alignments) 5.0 GB
ENCFF266EAP.bam bam (transcriptome alignments) 5.8 GB
ENCFF275JGQ.tsv tsv (differential expression quantifications) 4.3 MB
ENCFF281HMB.bam bam (alignments) 3.2 GB
ENCFF296IYJ.bam bam (alignments) 4.1 GB
ENCFF303LYI.tsv tsv (gene quantifications) 9.5 MB
ENCFF306UBZ.bigWig bigWig (minus strand signal of all reads) 75.6 MB
ENCFF332IPS.bigWig bigWig (plus strand signal of all reads) 76.8 MB
ENCFF369OWV.bigWig bigWig (minus strand signal of unique reads) 66.5 MB
ENCFF395BDC.bam bam (alignments) 4.1 GB
ENCFF397ESX.bam bam (alignments) 3.4 GB
ENCFF423VHC.tar tar (differential splicing quantifications) 3.6 MB
ENCFF425WNX.bigWig bigWig (plus strand signal of all reads) 69.1 MB
ENCFF428XCT.tsv tsv (transcript quantifications) 29.9 MB
ENCFF452TSN.tsv tsv (transcript quantifications) 27.3 MB
ENCFF462PLO.bigWig bigWig (minus strand signal of all reads) 66.1 MB
ENCFF462RQZ.bigWig bigWig (plus strand signal of all reads) 67.7 MB
ENCFF473JQP.bigWig bigWig (plus strand signal of unique reads) 68.4 MB
ENCFF478FQD.bam bam (alignments) 3.2 GB
ENCFF480ZVM.bigWig bigWig (plus strand signal of unique reads) 64.6 MB
ENCFF489OKO.bigWig bigWig (minus strand signal of unique reads) 67.5 MB
ENCFF500LRG.fastq fastq (reads) 2.3 GB
ENCFF519GAZ.tsv tsv (gene quantifications) 10.4 MB
ENCFF531GGR.fastq fastq (reads) 2.4 GB
ENCFF533CAI.bam bam (transcriptome alignments) 6.2 GB
ENCFF559WDT.bigWig bigWig (plus strand signal of all reads) 77.9 MB
ENCFF569NWL.bigWig bigWig (plus strand signal of unique reads) 68.9 MB
ENCFF578PXL.tsv tsv (gene quantifications) 9.1 MB
ENCFF581ANR.bigWig bigWig (plus strand signal of unique reads) 64.2 MB
ENCFF590GNV.bigWig bigWig (plus strand signal of all reads) 70.7 MB
ENCFF593DSC.bigWig bigWig (minus strand signal of all reads) 67.6 MB
ENCFF596IWM.bigWig bigWig (minus strand signal of all reads) 76.8 MB
ENCFF597UPG.bam bam (transcriptome alignments) 5.4 GB
ENCFF598MNK.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF608PUO.bigWig bigWig (minus strand signal of unique reads) 67.3 MB
ENCFF614ECI.bigWig bigWig (minus strand signal of unique reads) 63.5 MB
ENCFF625SAZ.bam bam (alignments) 3.2 GB
ENCFF634YSE.bigWig bigWig (plus strand signal of all reads) 76.8 MB
ENCFF665XYN.tsv tsv (gene quantifications) 9.1 MB
ENCFF681URG.bigWig bigWig (plus strand signal of all reads) 70.6 MB
ENCFF682KMV.bigWig bigWig (plus strand signal of unique reads) 69.0 MB
ENCFF691TOH.tsv tsv (transcript quantifications) 24.9 MB
ENCFF699SNJ.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF715TJY.bigWig bigWig (minus strand signal of unique reads) 60.5 MB
ENCFF734LKC.bigWig bigWig (minus strand signal of all reads) 75.3 MB
ENCFF739KFM.bigWig bigWig (minus strand signal of unique reads) 67.3 MB
ENCFF744XXA.bigWig bigWig (minus strand signal of unique reads) 62.3 MB
ENCFF812EPK.fastq fastq (reads) 2.3 GB
ENCFF819NRQ.bigWig bigWig (plus strand signal of all reads) 67.5 MB
ENCFF835NMY.bigWig bigWig (plus strand signal of all reads) 76.8 MB
ENCFF838PIC.bigWig bigWig (plus strand signal of unique reads) 69.1 MB
ENCFF845HGG.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF851PUM.bigWig bigWig (plus strand signal of all reads) 77.8 MB
ENCFF864SQZ.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF871RGG.bigWig bigWig (plus strand signal of all reads) 76.4 MB
ENCFF874ZBS.bigWig bigWig (plus strand signal of all reads) 68.7 MB
ENCFF883BJN.tsv tsv (transcript quantifications) 24.9 MB
ENCFF887LEI.bigWig bigWig (minus strand signal of all reads) 69.3 MB
ENCFF890DMY.bigWig bigWig (minus strand signal of all reads) 66.4 MB
ENCFF900HGU.bigWig bigWig (minus strand signal of unique reads) 67.4 MB
ENCFF915ZDW.bigWig bigWig (minus strand signal of unique reads) 66.6 MB
ENCFF916XIY.bigWig bigWig (plus strand signal of unique reads) 62.1 MB
ENCFF921PYY.tsv tsv (transcript quantifications) 25.4 MB
ENCFF931IDQ.bigWig bigWig (minus strand signal of unique reads) 62.9 MB
ENCFF932UHQ.tar tar (differential splicing quantifications) 15.2 MB
ENCFF939AFN.tsv tsv (transcript quantifications) 27.3 MB
ENCFF962MGQ.bigWig bigWig (plus strand signal of unique reads) 63.8 MB
ENCFF995CER.bam bam (alignments) 3.3 GB
ENCSR129ROE ENCSR · via encode_api

RNA-seq on K562 cells treated with an shRNA knockdown against SMN1. (SMN1_BGKLV24_B)

Homo sapiens

92 data files
FileTypeSize
ENCFF003DBX.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF010EXQ.bigWig bigWig (plus strand signal of all reads) 103.9 MB
ENCFF012QJG.bigWig bigWig (plus strand signal of unique reads) 80.9 MB
ENCFF043LCD.tar tar (differential splicing quantifications) 16.2 MB
ENCFF044IGS.bam bam (transcriptome alignments) 8.3 GB
ENCFF052FXR.bigWig bigWig (plus strand signal of all reads) 89.5 MB
ENCFF057RAV.bigWig bigWig (plus strand signal of all reads) 109.6 MB
ENCFF083LUK.bam bam (transcriptome alignments) 8.6 GB
ENCFF085XGT.tsv tsv (gene quantifications) 10.4 MB
ENCFF086SBM.tsv tsv (transcript quantifications) 25.0 MB
ENCFF086WNN.bigWig bigWig (minus strand signal of unique reads) 94.4 MB
ENCFF086ZCL.bam bam (alignments) 7.6 GB
ENCFF090QNR.tsv tsv (gene quantifications) 9.1 MB
ENCFF095CUQ.bam bam (transcriptome alignments) 9.3 GB
ENCFF102PEX.bigWig bigWig (plus strand signal of unique reads) 91.6 MB
ENCFF106RJA.bigWig bigWig (plus strand signal of all reads) 102.5 MB
ENCFF111MTM.bigWig bigWig (minus strand signal of unique reads) 81.5 MB
ENCFF143JXJ.bam bam (alignments) 6.2 GB
ENCFF145GYE.bigWig bigWig (minus strand signal of unique reads) 81.4 MB
ENCFF170YSI.bigWig bigWig (plus strand signal of unique reads) 83.4 MB
ENCFF178MZD.bigWig bigWig (plus strand signal of unique reads) 97.0 MB
ENCFF187PBL.tsv tsv (transcript quantifications) 25.0 MB
ENCFF189POT.bigWig bigWig (plus strand signal of unique reads) 83.7 MB
ENCFF196PGU.bigWig bigWig (plus strand signal of all reads) 106.8 MB
ENCFF202RJH.fastq fastq (reads) 4.2 GB
ENCFF221ICF.bigWig bigWig (minus strand signal of unique reads) 78.6 MB
ENCFF224DOE.fastq fastq (reads) 4.1 GB
ENCFF232NTL.tsv tsv (gene quantifications) 9.5 MB
ENCFF234PXA.tsv tsv (transcript quantifications) 25.4 MB
ENCFF261CPH.bigWig bigWig (minus strand signal of unique reads) 88.7 MB
ENCFF282JKG.bigWig bigWig (minus strand signal of all reads) 88.2 MB
ENCFF288JEN.bam bam (alignments) 7.5 GB
ENCFF306YQV.tsv tsv (differential expression quantifications) 2.6 MB
ENCFF317TGX.bigWig bigWig (plus strand signal of all reads) 92.1 MB
ENCFF318XCU.bigWig bigWig (minus strand signal of unique reads) 84.6 MB
ENCFF334YML.bigWig bigWig (plus strand signal of all reads) 93.8 MB
ENCFF347ESZ.bigWig bigWig (minus strand signal of all reads) 102.6 MB
ENCFF349RGD.bam bam (transcriptome alignments) 8.5 GB
ENCFF354ZGH.bigWig bigWig (plus strand signal of unique reads) 90.2 MB
ENCFF366HII.tsv tsv (transcript quantifications) 25.4 MB
ENCFF395MLJ.bigWig bigWig (minus strand signal of all reads) 102.6 MB
ENCFF395NRA.bam bam (alignments) 7.4 GB
ENCFF397EWE.bigWig bigWig (plus strand signal of all reads) 103.9 MB
ENCFF421XDY.bigWig bigWig (plus strand signal of unique reads) 91.1 MB
ENCFF434ZNT.tsv tsv (transcript quantifications) 27.4 MB
ENCFF453GSQ.bigWig bigWig (minus strand signal of all reads) 101.0 MB
ENCFF478BBK.tsv tsv (gene quantifications) 9.5 MB
ENCFF501VSY.tsv tsv (differential expression quantifications) 5.5 MB
ENCFF502CGB.tar tar (differential splicing quantifications) 3.7 MB
ENCFF522XJW.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF527HIU.bam bam (alignments) 6.1 GB
ENCFF527HOG.bigWig bigWig (minus strand signal of all reads) 95.7 MB
ENCFF530BJE.bigWig bigWig (minus strand signal of all reads) 91.8 MB
ENCFF550GAV.bigWig bigWig (plus strand signal of all reads) 95.7 MB
ENCFF563KRZ.bam bam (transcriptome alignments) 8.2 GB
ENCFF572QNK.bigWig bigWig (plus strand signal of all reads) 97.7 MB
ENCFF576UMD.bigWig bigWig (minus strand signal of unique reads) 93.9 MB
ENCFF604LEN.tsv tsv (differential expression quantifications) 4.2 MB
ENCFF606ZUN.tsv tsv (transcript quantifications) 29.9 MB
ENCFF607FQY.bigWig bigWig (plus strand signal of unique reads) 91.3 MB
ENCFF629KSP.bigWig bigWig (minus strand signal of all reads) 86.1 MB
ENCFF651UJT.bigWig bigWig (plus strand signal of unique reads) 89.6 MB
ENCFF652ZSL.bam bam (alignments) 6.1 GB
ENCFF653NRN.bigWig bigWig (minus strand signal of all reads) 105.1 MB
ENCFF654KPG.bigWig bigWig (minus strand signal of unique reads) 87.6 MB
ENCFF654YRW.bam bam (alignments) 6.2 GB
ENCFF663LPH.tar tar (differential splicing quantifications) 4.5 MB
ENCFF680USQ.bigWig bigWig (minus strand signal of all reads) 94.2 MB
ENCFF701GSN.tsv tsv (transcript quantifications) 29.9 MB
ENCFF731DXF.bigWig bigWig (minus strand signal of all reads) 90.3 MB
ENCFF745MEV.bam bam (alignments) 7.5 GB
ENCFF794QFG.bigWig bigWig (minus strand signal of all reads) 108.0 MB
ENCFF810LEQ.bigWig bigWig (minus strand signal of unique reads) 89.1 MB
ENCFF816LTD.bigWig bigWig (plus strand signal of all reads) 109.6 MB
ENCFF823OCV.bigWig bigWig (plus strand signal of unique reads) 87.3 MB
ENCFF827HRK.bigWig bigWig (minus strand signal of all reads) 108.0 MB
ENCFF835WRI.bigWig bigWig (minus strand signal of unique reads) 89.4 MB
ENCFF843BKX.bam bam (transcriptome alignments) 9.7 GB
ENCFF845ABX.tsv tsv (gene quantifications) 9.1 MB
ENCFF871QXZ.fastq fastq (reads) 4.2 GB
ENCFF876HVX.bigWig bigWig (plus strand signal of unique reads) 97.0 MB
ENCFF883FSD.bam bam (alignments) 6.2 GB
ENCFF897EJI.bam bam (alignments) 7.6 GB
ENCFF899FPU.bigWig bigWig (plus strand signal of unique reads) 96.5 MB
ENCFF910LZO.bigWig bigWig (minus strand signal of unique reads) 87.4 MB
ENCFF911PIU.fastq fastq (reads) 4.2 GB
ENCFF916KJU.bam bam (alignments) 7.4 GB
ENCFF921BYQ.bigWig bigWig (plus strand signal of all reads) 87.8 MB
ENCFF925FMR.bigWig bigWig (minus strand signal of unique reads) 94.2 MB
ENCFF944NQR.bam bam (alignments) 6.3 GB
ENCFF956IBS.tsv tsv (gene quantifications) 10.4 MB
ENCFF995QCT.tsv tsv (transcript quantifications) 27.4 MB
ENCSR494VSD ENCSR · via encode_api

shRNA knockdown against CSDA in HepG2 cells followed by RNA-seq. (CSDA-30-BGHLV20)

Homo sapiens

92 data files
FileTypeSize
ENCFF005CFT.bigWig bigWig (plus strand signal of all reads) 73.4 MB
ENCFF026RYV.bam bam (alignments) 3.7 GB
ENCFF027GIK.bigWig bigWig (plus strand signal of unique reads) 66.8 MB
ENCFF034NMG.tsv tsv (differential expression quantifications) 5.5 MB
ENCFF036XRE.bam bam (alignments) 4.3 GB
ENCFF041OQG.tsv tsv (gene quantifications) 9.4 MB
ENCFF048OWP.bigWig bigWig (minus strand signal of unique reads) 59.9 MB
ENCFF067OBC.bam bam (alignments) 3.3 GB
ENCFF078ZOW.bigWig bigWig (plus strand signal of all reads) 66.8 MB
ENCFF118VJE.bam bam (alignments) 3.7 GB
ENCFF121VWZ.bam bam (alignments) 3.2 GB
ENCFF145UQU.bigWig bigWig (minus strand signal of all reads) 65.4 MB
ENCFF161SRL.bigWig bigWig (minus strand signal of unique reads) 63.2 MB
ENCFF162DLM.tsv tsv (transcript quantifications) 25.3 MB
ENCFF162HOF.bam bam (transcriptome alignments) 4.6 GB
ENCFF176FRH.bigWig bigWig (plus strand signal of unique reads) 61.6 MB
ENCFF188RMG.tar tar (differential splicing quantifications) 3.3 MB
ENCFF211GMC.tar tar (differential splicing quantifications) 2.8 MB
ENCFF212RVY.fastq fastq (reads) 2.1 GB
ENCFF230HHM.bigWig bigWig (plus strand signal of unique reads) 66.2 MB
ENCFF236FRO.bigWig bigWig (minus strand signal of unique reads) 60.6 MB
ENCFF257XPQ.bigWig bigWig (plus strand signal of unique reads) 65.5 MB
ENCFF264JQK.tsv tsv (transcript quantifications) 24.9 MB
ENCFF284OTQ.bigWig bigWig (plus strand signal of all reads) 72.3 MB
ENCFF293SVX.bigWig bigWig (plus strand signal of all reads) 62.1 MB
ENCFF296FTT.bam bam (alignments) 3.7 GB
ENCFF309RRK.bigWig bigWig (minus strand signal of unique reads) 63.6 MB
ENCFF313CJK.bigWig bigWig (plus strand signal of unique reads) 58.2 MB
ENCFF317FLH.tsv tsv (transcript quantifications) 27.2 MB
ENCFF333GZO.tsv tsv (transcript quantifications) 29.8 MB
ENCFF345IRH.bigWig bigWig (minus strand signal of unique reads) 59.8 MB
ENCFF362PLE.bigWig bigWig (plus strand signal of all reads) 64.9 MB
ENCFF369BJG.tsv tsv (gene quantifications) 10.4 MB
ENCFF370KTD.bam bam (alignments) 3.8 GB
ENCFF370UIU.bigWig bigWig (minus strand signal of unique reads) 63.4 MB
ENCFF395SCX.bigWig bigWig (plus strand signal of all reads) 72.3 MB
ENCFF400FHJ.bigWig bigWig (plus strand signal of unique reads) 58.0 MB
ENCFF403DZX.bigWig bigWig (minus strand signal of all reads) 64.2 MB
ENCFF415YSJ.tsv tsv (transcript quantifications) 27.3 MB
ENCFF420RSN.bigWig bigWig (plus strand signal of unique reads) 61.9 MB
ENCFF435BSQ.bigWig bigWig (plus strand signal of all reads) 62.4 MB
ENCFF438PPS.fastq fastq (reads) 1.9 GB
ENCFF455HHH.tsv tsv (gene quantifications) 9.4 MB
ENCFF475BMM.bigWig bigWig (minus strand signal of unique reads) 64.3 MB
ENCFF486WPP.bigWig bigWig (minus strand signal of all reads) 64.0 MB
ENCFF488FWZ.bigWig bigWig (plus strand signal of unique reads) 62.4 MB
ENCFF491KLM.bigWig bigWig (minus strand signal of all reads) 70.8 MB
ENCFF497MAW.bigWig bigWig (minus strand signal of unique reads) 56.4 MB
ENCFF505QSH.bigWig bigWig (minus strand signal of unique reads) 60.3 MB
ENCFF512EDN.bigWig bigWig (plus strand signal of unique reads) 65.1 MB
ENCFF531HNE.tsv tsv (transcript quantifications) 25.3 MB
ENCFF543HDA.bam bam (transcriptome alignments) 5.1 GB
ENCFF552XHQ.fastq fastq (reads) 2.3 GB
ENCFF558EGN.bigWig bigWig (minus strand signal of all reads) 71.0 MB
ENCFF558ZLL.bigWig bigWig (minus strand signal of unique reads) 64.9 MB
ENCFF563DRE.bigWig bigWig (plus strand signal of unique reads) 66.8 MB
ENCFF571NNW.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF571RGP.bigWig bigWig (minus strand signal of all reads) 72.0 MB
ENCFF575HPJ.bigWig bigWig (plus strand signal of all reads) 65.3 MB
ENCFF597SDA.tar tar (differential splicing quantifications) 14.9 MB
ENCFF597UEG.bigWig bigWig (minus strand signal of unique reads) 56.2 MB
ENCFF598CRO.bigWig bigWig (plus strand signal of unique reads) 61.6 MB
ENCFF608KYP.bam bam (transcriptome alignments) 5.5 GB
ENCFF608QFL.tsv tsv (differential expression quantifications) 4.2 MB
ENCFF611FYD.bam bam (alignments) 4.4 GB
ENCFF644NAK.bam bam (transcriptome alignments) 5.5 GB
ENCFF663DXL.bam bam (alignments) 3.2 GB
ENCFF664FHG.bigWig bigWig (minus strand signal of all reads) 63.6 MB
ENCFF671TGN.bam bam (alignments) 4.4 GB
ENCFF682EPA.tsv tsv (differential expression quantifications) 2.8 MB
ENCFF686UKP.bigWig bigWig (plus strand signal of all reads) 65.5 MB
ENCFF713TPG.bam bam (alignments) 3.8 GB
ENCFF715FJL.fastq fastq (reads) 2.5 GB
ENCFF733NYK.bigWig bigWig (minus strand signal of all reads) 61.0 MB
ENCFF764GOM.tsv tsv (differential expression quantifications) 1.8 MB
ENCFF764HLQ.bigWig bigWig (plus strand signal of all reads) 72.3 MB
ENCFF771ZAX.tsv tsv (transcript quantifications) 24.9 MB
ENCFF802HYU.bigWig bigWig (plus strand signal of all reads) 71.6 MB
ENCFF810AEB.bigWig bigWig (minus strand signal of all reads) 70.3 MB
ENCFF812MHH.bigWig bigWig (plus strand signal of all reads) 73.4 MB
ENCFF830UUD.bam bam (alignments) 3.8 GB
ENCFF837IIK.tsv tsv (gene quantifications) 9.1 MB
ENCFF852VXW.tsv tsv (gene quantifications) 9.1 MB
ENCFF857VCX.bam bam (transcriptome alignments) 4.6 GB
ENCFF864TWT.bigWig bigWig (minus strand signal of all reads) 70.8 MB
ENCFF875JDU.bigWig bigWig (minus strand signal of all reads) 71.9 MB
ENCFF880ABX.tsv tsv (transcript quantifications) 29.8 MB
ENCFF908ZOJ.bigWig bigWig (minus strand signal of unique reads) 64.9 MB
ENCFF920YJA.bigWig bigWig (plus strand signal of unique reads) 65.4 MB
ENCFF922YJV.bigWig bigWig (minus strand signal of all reads) 60.7 MB
ENCFF930LRB.tsv tsv (gene quantifications) 10.4 MB
ENCFF974GPH.bam bam (transcriptome alignments) 6.1 GB
ENCSR477TRX ENCSR · via encode_api

shRNA knockdown against EEF2 in HepG2 cells followed by RNA-seq. (EEF2_BGHLV16)

Homo sapiens

92 data files
FileTypeSize
ENCFF062AVO.bam bam (alignments) 4.7 GB
ENCFF066CTE.bigWig bigWig (plus strand signal of unique reads) 74.3 MB
ENCFF072EME.bigWig bigWig (minus strand signal of unique reads) 75.0 MB
ENCFF077VHQ.tsv tsv (differential expression quantifications) 5.5 MB
ENCFF090HNF.bigWig bigWig (minus strand signal of all reads) 97.5 MB
ENCFF106EUB.bigWig bigWig (minus strand signal of unique reads) 80.7 MB
ENCFF108QDN.tsv tsv (transcript quantifications) 24.9 MB
ENCFF133CUP.bam bam (alignments) 5.6 GB
ENCFF141CMJ.bigWig bigWig (plus strand signal of unique reads) 91.0 MB
ENCFF159OJQ.bigWig bigWig (minus strand signal of all reads) 87.0 MB
ENCFF164LYO.bigWig bigWig (minus strand signal of all reads) 89.1 MB
ENCFF168SQD.bigWig bigWig (minus strand signal of unique reads) 73.6 MB
ENCFF196ADV.tsv tsv (transcript quantifications) 29.8 MB
ENCFF196UFO.bam bam (alignments) 5.2 GB
ENCFF208XSB.bam bam (transcriptome alignments) 7.0 GB
ENCFF210GNP.bigWig bigWig (minus strand signal of all reads) 86.8 MB
ENCFF224WJS.bigWig bigWig (plus strand signal of unique reads) 80.5 MB
ENCFF227NCH.bam bam (transcriptome alignments) 7.9 GB
ENCFF229NNL.bigWig bigWig (plus strand signal of unique reads) 86.5 MB
ENCFF237OEE.bam bam (alignments) 4.7 GB
ENCFF267CKD.tsv tsv (gene quantifications) 10.4 MB
ENCFF270BES.tsv tsv (transcript quantifications) 24.9 MB
ENCFF282YQX.bigWig bigWig (minus strand signal of unique reads) 72.0 MB
ENCFF289HDF.bigWig bigWig (minus strand signal of all reads) 86.5 MB
ENCFF292CKX.fastq fastq (reads) 3.0 GB
ENCFF293PDA.fastq fastq (reads) 3.5 GB
ENCFF303ORF.tar tar (differential splicing quantifications) 4.1 MB
ENCFF309MGI.bigWig bigWig (plus strand signal of all reads) 80.7 MB
ENCFF318FMP.bigWig bigWig (plus strand signal of unique reads) 83.2 MB
ENCFF331IZR.bigWig bigWig (minus strand signal of unique reads) 77.9 MB
ENCFF335MGY.tsv tsv (transcript quantifications) 27.4 MB
ENCFF339JEF.bigWig bigWig (plus strand signal of all reads) 92.1 MB
ENCFF351KHB.bigWig bigWig (plus strand signal of all reads) 79.4 MB
ENCFF351MYD.bigWig bigWig (minus strand signal of all reads) 97.5 MB
ENCFF355TOR.bigWig bigWig (plus strand signal of all reads) 99.6 MB
ENCFF355XSW.bigWig bigWig (minus strand signal of unique reads) 84.1 MB
ENCFF374ZIN.bigWig bigWig (plus strand signal of all reads) 99.8 MB
ENCFF376FJP.bigWig bigWig (plus strand signal of all reads) 88.8 MB
ENCFF403XFE.bigWig bigWig (minus strand signal of unique reads) 78.7 MB
ENCFF404PJT.bigWig bigWig (minus strand signal of all reads) 80.5 MB
ENCFF413LEH.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF421YWI.bigWig bigWig (minus strand signal of unique reads) 83.7 MB
ENCFF447TWH.bam bam (transcriptome alignments) 8.9 GB
ENCFF463WUK.tsv tsv (gene quantifications) 9.1 MB
ENCFF477KJS.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF477MYS.bam bam (alignments) 6.1 GB
ENCFF478UVV.bigWig bigWig (plus strand signal of unique reads) 80.3 MB
ENCFF483NOR.bigWig bigWig (plus strand signal of unique reads) 75.8 MB
ENCFF492WOH.tsv tsv (gene quantifications) 9.5 MB
ENCFF494QFX.bam bam (alignments) 6.3 GB
ENCFF505EKU.bigWig bigWig (plus strand signal of unique reads) 91.0 MB
ENCFF521TMC.fastq fastq (reads) 3.2 GB
ENCFF523DQA.bigWig bigWig (plus strand signal of all reads) 88.8 MB
ENCFF542PUB.bigWig bigWig (minus strand signal of all reads) 86.8 MB
ENCFF553BFE.bigWig bigWig (minus strand signal of unique reads) 88.4 MB
ENCFF560EJB.bam bam (transcriptome alignments) 7.9 GB
ENCFF560KTG.tsv tsv (gene quantifications) 9.5 MB
ENCFF562WNY.bigWig bigWig (plus strand signal of unique reads) 81.3 MB
ENCFF567MXR.bam bam (alignments) 6.3 GB
ENCFF568ESO.tsv tsv (transcript quantifications) 29.8 MB
ENCFF570XNC.bam bam (alignments) 5.3 GB
ENCFF581SYU.tar tar (differential splicing quantifications) 14.0 MB
ENCFF588SKG.bigWig bigWig (plus strand signal of all reads) 82.5 MB
ENCFF591NXT.bam bam (alignments) 5.2 GB
ENCFF601SNO.bigWig bigWig (minus strand signal of all reads) 90.0 MB
ENCFF606NKB.bigWig bigWig (minus strand signal of unique reads) 78.0 MB
ENCFF610PNA.bam bam (alignments) 4.7 GB
ENCFF617APB.bigWig bigWig (plus strand signal of all reads) 91.1 MB
ENCFF632WPA.bam bam (transcriptome alignments) 7.1 GB
ENCFF645RMQ.bigWig bigWig (minus strand signal of unique reads) 88.3 MB
ENCFF669NNR.tsv tsv (transcript quantifications) 25.3 MB
ENCFF690AHN.bigWig bigWig (plus strand signal of all reads) 99.6 MB
ENCFF696PCN.fastq fastq (reads) 3.4 GB
ENCFF727XEA.tsv tsv (differential expression quantifications) 1.8 MB
ENCFF743VEM.tsv tsv (gene quantifications) 10.4 MB
ENCFF763QVG.bigWig bigWig (minus strand signal of unique reads) 88.4 MB
ENCFF782KSH.bigWig bigWig (plus strand signal of unique reads) 77.3 MB
ENCFF783DSX.bigWig bigWig (minus strand signal of all reads) 77.3 MB
ENCFF783OBG.bigWig bigWig (plus strand signal of unique reads) 91.1 MB
ENCFF786HJI.bigWig bigWig (plus strand signal of all reads) 88.6 MB
ENCFF793JZI.tsv tsv (transcript quantifications) 25.3 MB
ENCFF796ZGY.bigWig bigWig (minus strand signal of all reads) 78.9 MB
ENCFF832EVU.tar tar (differential splicing quantifications) 3.5 MB
ENCFF832THG.bam bam (alignments) 5.5 GB
ENCFF839QHL.bam bam (alignments) 5.6 GB
ENCFF869MEA.bigWig bigWig (plus strand signal of unique reads) 86.3 MB
ENCFF881RDT.tsv tsv (transcript quantifications) 27.4 MB
ENCFF922PHD.tsv tsv (differential expression quantifications) 4.3 MB
ENCFF933VDI.bigWig bigWig (plus strand signal of all reads) 88.8 MB
ENCFF958FRX.bam bam (transcriptome alignments) 7.9 GB
ENCFF964MVX.tsv tsv (gene quantifications) 9.1 MB
ENCFF974NPU.bigWig bigWig (minus strand signal of all reads) 97.9 MB
ENCSR219DXZ ENCSR · via encode_api

RNA-seq on K562 cells treated with an shRNA knockdown against SBDS. (SBDS_BGKLV24_B)

Homo sapiens

92 data files
FileTypeSize
ENCFF004ESF.bigWig bigWig (minus strand signal of all reads) 106.9 MB
ENCFF008KSQ.bam bam (alignments) 7.3 GB
ENCFF026XUB.fastq fastq (reads) 3.3 GB
ENCFF036SPH.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF050AYC.bigWig bigWig (plus strand signal of unique reads) 95.5 MB
ENCFF055WUU.bam bam (alignments) 5.9 GB
ENCFF056YLS.bigWig bigWig (plus strand signal of unique reads) 95.9 MB
ENCFF065ISI.tsv tsv (gene quantifications) 9.1 MB
ENCFF066NGI.bigWig bigWig (plus strand signal of all reads) 93.7 MB
ENCFF071VKP.bigWig bigWig (plus strand signal of unique reads) 96.6 MB
ENCFF075AED.tsv tsv (gene quantifications) 9.5 MB
ENCFF090RKA.bigWig bigWig (plus strand signal of all reads) 107.6 MB
ENCFF101NOG.tsv tsv (transcript quantifications) 29.9 MB
ENCFF115VXW.bigWig bigWig (minus strand signal of unique reads) 87.8 MB
ENCFF131OZI.tsv tsv (gene quantifications) 9.1 MB
ENCFF144XOL.tsv tsv (gene quantifications) 10.4 MB
ENCFF155HEP.bam bam (transcriptome alignments) 9.2 GB
ENCFF188GVI.bigWig bigWig (minus strand signal of unique reads) 92.3 MB
ENCFF219NYW.tar tar (differential splicing quantifications) 4.7 MB
ENCFF223XBE.bam bam (alignments) 7.2 GB
ENCFF228FRJ.bigWig bigWig (minus strand signal of unique reads) 88.0 MB
ENCFF229DXA.bam bam (alignments) 4.9 GB
ENCFF240URJ.bam bam (alignments) 5.9 GB
ENCFF265LBU.bigWig bigWig (minus strand signal of all reads) 90.5 MB
ENCFF269IOD.tsv tsv (transcript quantifications) 25.4 MB
ENCFF271DKU.bigWig bigWig (plus strand signal of all reads) 106.9 MB
ENCFF286MBB.bigWig bigWig (plus strand signal of all reads) 98.0 MB
ENCFF290RQK.bigWig bigWig (plus strand signal of unique reads) 94.5 MB
ENCFF299OGH.bigWig bigWig (minus strand signal of all reads) 94.3 MB
ENCFF303HAB.bigWig bigWig (minus strand signal of all reads) 105.5 MB
ENCFF304GZJ.bigWig bigWig (minus strand signal of unique reads) 82.4 MB
ENCFF312LUE.bigWig bigWig (plus strand signal of unique reads) 90.2 MB
ENCFF332IGF.bigWig bigWig (plus strand signal of unique reads) 96.6 MB
ENCFF336AQD.bam bam (transcriptome alignments) 7.3 GB
ENCFF345UYU.bigWig bigWig (minus strand signal of unique reads) 93.7 MB
ENCFF357FCB.bigWig bigWig (minus strand signal of unique reads) 93.2 MB
ENCFF363OXP.bigWig bigWig (plus strand signal of unique reads) 90.1 MB
ENCFF373XAT.bigWig bigWig (plus strand signal of all reads) 94.3 MB
ENCFF373YGH.bigWig bigWig (plus strand signal of unique reads) 88.2 MB
ENCFF381IBP.bigWig bigWig (minus strand signal of all reads) 106.6 MB
ENCFF398VZL.tsv tsv (differential expression quantifications) 2.0 MB
ENCFF399SDB.fastq fastq (reads) 3.3 GB
ENCFF409BGS.tsv tsv (transcript quantifications) 27.4 MB
ENCFF413DYP.tsv tsv (transcript quantifications) 27.4 MB
ENCFF417DFN.bigWig bigWig (plus strand signal of all reads) 108.2 MB
ENCFF432HGX.bigWig bigWig (plus strand signal of all reads) 107.9 MB
ENCFF447KJH.bigWig bigWig (minus strand signal of unique reads) 87.0 MB
ENCFF455SRR.bigWig bigWig (minus strand signal of all reads) 106.6 MB
ENCFF457ZDB.tsv tsv (transcript quantifications) 25.4 MB
ENCFF469IUV.bigWig bigWig (minus strand signal of unique reads) 94.4 MB
ENCFF471WLC.bam bam (alignments) 6.0 GB
ENCFF473JRS.bigWig bigWig (plus strand signal of unique reads) 95.6 MB
ENCFF485GZJ.tar tar (differential splicing quantifications) 3.8 MB
ENCFF492WFD.bigWig bigWig (minus strand signal of all reads) 106.9 MB
ENCFF504BJM.tsv tsv (differential expression quantifications) 4.4 MB
ENCFF509JOV.bigWig bigWig (minus strand signal of all reads) 96.3 MB
ENCFF526RND.tsv tsv (gene quantifications) 9.5 MB
ENCFF571ZRQ.fastq fastq (reads) 4.1 GB
ENCFF596XDW.bam bam (transcriptome alignments) 6.5 GB
ENCFF599JAE.tsv tsv (transcript quantifications) 24.9 MB
ENCFF606BHH.bigWig bigWig (plus strand signal of unique reads) 88.9 MB
ENCFF653RWS.tsv tsv (differential expression quantifications) 5.5 MB
ENCFF675AMR.tsv tsv (transcript quantifications) 25.0 MB
ENCFF675NNN.bigWig bigWig (minus strand signal of all reads) 91.9 MB
ENCFF683JRD.bigWig bigWig (minus strand signal of unique reads) 86.3 MB
ENCFF687MTW.tsv tsv (transcript quantifications) 29.9 MB
ENCFF688FVA.bigWig bigWig (plus strand signal of unique reads) 84.8 MB
ENCFF696FNG.bigWig bigWig (plus strand signal of all reads) 108.2 MB
ENCFF705XTY.bigWig bigWig (plus strand signal of unique reads) 86.0 MB
ENCFF779QVC.bam bam (transcriptome alignments) 8.2 GB
ENCFF791PWH.bam bam (alignments) 4.9 GB
ENCFF796PMC.tsv tsv (gene quantifications) 10.4 MB
ENCFF798OSV.bam bam (alignments) 5.9 GB
ENCFF818ZHK.bam bam (alignments) 7.3 GB
ENCFF859JCN.bigWig bigWig (plus strand signal of all reads) 98.3 MB
ENCFF869UQH.bigWig bigWig (minus strand signal of all reads) 93.2 MB
ENCFF872ZUF.bigWig bigWig (minus strand signal of all reads) 96.5 MB
ENCFF884QVR.bam bam (alignments) 5.8 GB
ENCFF908KNL.bam bam (alignments) 7.2 GB
ENCFF909MEM.fastq fastq (reads) 4.0 GB
ENCFF915RWR.bigWig bigWig (plus strand signal of all reads) 108.0 MB
ENCFF933LBL.tar tar (differential splicing quantifications) 16.2 MB
ENCFF942AGO.bigWig bigWig (minus strand signal of all reads) 106.1 MB
ENCFF947QSL.bigWig bigWig (plus strand signal of all reads) 92.0 MB
ENCFF955EPU.bigWig bigWig (minus strand signal of unique reads) 94.4 MB
ENCFF958CAQ.bigWig bigWig (plus strand signal of all reads) 95.6 MB
ENCFF960FYF.bigWig bigWig (minus strand signal of unique reads) 83.7 MB
ENCFF964ACB.bam bam (alignments) 7.1 GB
ENCFF975OQX.bam bam (transcriptome alignments) 8.1 GB
ENCFF979JFR.bigWig bigWig (minus strand signal of unique reads) 93.2 MB
ENCFF985PGC.bam bam (transcriptome alignments) 6.5 GB
ENCFF987ADB.tsv tsv (differential expression quantifications) 2.9 MB
ENCSR543LCG ENCSR · via encode_api

RNA-seq on K562 cells treated with a CRISPR gRNA against IGF2BP1. (IGF2BP1_BGKcLV02)

Homo sapiens

92 data files
FileTypeSize
ENCFF024PYY.tsv tsv (transcript quantifications) 25.3 MB
ENCFF058FGN.bigWig bigWig (plus strand signal of all reads) 114.4 MB
ENCFF072LSD.tsv tsv (transcript quantifications) 29.8 MB
ENCFF084GXT.bam bam (transcriptome alignments) 7.4 GB
ENCFF085XRA.bigWig bigWig (plus strand signal of unique reads) 85.3 MB
ENCFF095FPN.tsv tsv (gene quantifications) 10.4 MB
ENCFF098PZO.bigWig bigWig (minus strand signal of unique reads) 113.5 MB
ENCFF108LKR.tsv tsv (differential expression quantifications) 5.7 MB
ENCFF108QWK.bigWig bigWig (minus strand signal of all reads) 128.0 MB
ENCFF115MWD.bigWig bigWig (plus strand signal of unique reads) 115.7 MB
ENCFF117XXW.bam bam (alignments) 4.9 GB
ENCFF126XTP.bigWig bigWig (plus strand signal of all reads) 128.2 MB
ENCFF130WAX.bigWig bigWig (minus strand signal of all reads) 86.6 MB
ENCFF143FVS.bigWig bigWig (plus strand signal of unique reads) 109.6 MB
ENCFF158TVB.tsv tsv (gene quantifications) 10.4 MB
ENCFF172VVW.tsv tsv (transcript quantifications) 27.5 MB
ENCFF173HNV.tar tar (differential splicing quantifications) 5.1 MB
ENCFF198EGG.bam bam (transcriptome alignments) 7.5 GB
ENCFF198UYE.tar tar (differential splicing quantifications) 4.3 MB
ENCFF210JMN.tsv tsv (transcript quantifications) 24.9 MB
ENCFF214ZXS.tsv tsv (gene quantifications) 9.5 MB
ENCFF221DVZ.bigWig bigWig (minus strand signal of unique reads) 113.4 MB
ENCFF224HCN.tsv tsv (gene quantifications) 9.1 MB
ENCFF236VNZ.fastq fastq (reads) 2.3 GB
ENCFF236WKB.bigWig bigWig (plus strand signal of unique reads) 116.1 MB
ENCFF273KAC.bigWig bigWig (minus strand signal of all reads) 100.4 MB
ENCFF274XMN.tsv tsv (transcript quantifications) 29.8 MB
ENCFF284QUA.bam bam (alignments) 4.3 GB
ENCFF295PBO.bigWig bigWig (minus strand signal of all reads) 117.9 MB
ENCFF299XEA.bigWig bigWig (minus strand signal of unique reads) 89.0 MB
ENCFF315ZAT.tar tar (differential splicing quantifications) 16.5 MB
ENCFF324PIE.bigWig bigWig (plus strand signal of unique reads) 81.4 MB
ENCFF333WXT.tsv tsv (differential expression quantifications) 2.0 MB
ENCFF334MVF.bigWig bigWig (minus strand signal of unique reads) 83.6 MB
ENCFF337SJR.bigWig bigWig (plus strand signal of unique reads) 90.5 MB
ENCFF340DBD.bigWig bigWig (minus strand signal of all reads) 112.4 MB
ENCFF342CTL.tsv tsv (differential expression quantifications) 4.3 MB
ENCFF344AFT.bigWig bigWig (minus strand signal of unique reads) 106.2 MB
ENCFF365YEY.tsv tsv (gene quantifications) 9.1 MB
ENCFF366MLY.bigWig bigWig (plus strand signal of unique reads) 90.4 MB
ENCFF367HWQ.bam bam (alignments) 6.3 GB
ENCFF377WAF.bigWig bigWig (plus strand signal of all reads) 129.6 MB
ENCFF404EQT.bigWig bigWig (minus strand signal of unique reads) 106.8 MB
ENCFF420BES.bigWig bigWig (plus strand signal of all reads) 120.0 MB
ENCFF423FLJ.bigWig bigWig (plus strand signal of unique reads) 116.0 MB
ENCFF435UEJ.bam bam (transcriptome alignments) 5.1 GB
ENCFF448PJW.bigWig bigWig (minus strand signal of unique reads) 79.2 MB
ENCFF449BMX.bam bam (alignments) 4.9 GB
ENCFF455ZJB.bigWig bigWig (minus strand signal of all reads) 89.0 MB
ENCFF465RXH.bam bam (alignments) 3.4 GB
ENCFF468NXR.bam bam (transcriptome alignments) 5.0 GB
ENCFF474TNL.fastq fastq (reads) 2.3 GB
ENCFF511EIM.bigWig bigWig (minus strand signal of unique reads) 88.3 MB
ENCFF513WMX.tsv tsv (transcript quantifications) 27.4 MB
ENCFF515GLY.bigWig bigWig (minus strand signal of all reads) 128.0 MB
ENCFF522JVV.bigWig bigWig (minus strand signal of all reads) 92.3 MB
ENCFF548REE.bam bam (alignments) 6.0 GB
ENCFF557AYB.bam bam (alignments) 4.1 GB
ENCFF579LWV.bigWig bigWig (minus strand signal of unique reads) 112.9 MB
ENCFF585AXW.bigWig bigWig (plus strand signal of all reads) 88.1 MB
ENCFF634NQK.bam bam (transcriptome alignments) 5.8 GB
ENCFF640YDL.bam bam (alignments) 3.3 GB
ENCFF649PLN.bigWig bigWig (minus strand signal of all reads) 100.4 MB
ENCFF671RKP.bam bam (alignments) 3.3 GB
ENCFF683LXJ.bigWig bigWig (plus strand signal of all reads) 101.6 MB
ENCFF691KLJ.tsv tsv (transcript quantifications) 24.9 MB
ENCFF693FBS.tsv tsv (differential expression quantifications) 2.8 MB
ENCFF706JYX.bam bam (transcriptome alignments) 8.5 GB
ENCFF707FQJ.bigWig bigWig (plus strand signal of all reads) 129.6 MB
ENCFF721FNO.bigWig bigWig (plus strand signal of all reads) 101.4 MB
ENCFF731HPX.fastq fastq (reads) 3.4 GB
ENCFF731QXB.bigWig bigWig (minus strand signal of unique reads) 84.3 MB
ENCFF753DLM.bigWig bigWig (minus strand signal of all reads) 113.4 MB
ENCFF755YQV.tsv tsv (transcript quantifications) 25.3 MB
ENCFF760ICA.bigWig bigWig (plus strand signal of unique reads) 105.2 MB
ENCFF768YUP.bigWig bigWig (minus strand signal of all reads) 126.5 MB
ENCFF772HHV.fastq fastq (reads) 3.4 GB
ENCFF776QLZ.bigWig bigWig (minus strand signal of unique reads) 102.3 MB
ENCFF780DFW.bigWig bigWig (minus strand signal of all reads) 100.1 MB
ENCFF845MKH.bam bam (alignments) 6.3 GB
ENCFF861WRN.bigWig bigWig (plus strand signal of unique reads) 108.6 MB
ENCFF862SFM.bam bam (alignments) 4.3 GB
ENCFF876NMV.bigWig bigWig (plus strand signal of all reads) 114.8 MB
ENCFF879HAE.bam bam (alignments) 5.0 GB
ENCFF887SUS.tsv tsv (gene quantifications) 9.5 MB
ENCFF897VUM.bigWig bigWig (plus strand signal of unique reads) 86.5 MB
ENCFF931UJV.bigWig bigWig (plus strand signal of all reads) 93.9 MB
ENCFF935QDA.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF949UYS.bigWig bigWig (minus strand signal of unique reads) 88.5 MB
ENCFF951OGE.bigWig bigWig (plus strand signal of all reads) 90.0 MB
ENCFF953POV.bigWig bigWig (plus strand signal of all reads) 101.6 MB
ENCFF991NOO.bigWig bigWig (plus strand signal of unique reads) 91.0 MB
ENCSR139LOF ENCSR · via encode_api

RNA-seq on K562 cells treated with a CRISPR gRNA against SRSF7. (SRSF7_BGKcLV02)

Homo sapiens

92 data files
FileTypeSize
ENCFF015ZZT.bigWig bigWig (minus strand signal of all reads) 92.0 MB
ENCFF021LEG.bigWig bigWig (minus strand signal of unique reads) 89.6 MB
ENCFF027UOO.bigWig bigWig (minus strand signal of all reads) 90.0 MB
ENCFF035NFY.bam bam (alignments) 4.1 GB
ENCFF043IJI.tsv tsv (transcript quantifications) 24.9 MB
ENCFF059TND.tsv tsv (differential expression quantifications) 4.4 MB
ENCFF068QAB.bigWig bigWig (minus strand signal of all reads) 101.8 MB
ENCFF088TVM.bam bam (transcriptome alignments) 5.8 GB
ENCFF111LXV.tsv tsv (differential expression quantifications) 2.6 MB
ENCFF123OII.bigWig bigWig (plus strand signal of all reads) 102.6 MB
ENCFF126DHD.bigWig bigWig (minus strand signal of all reads) 103.0 MB
ENCFF132PBB.bigWig bigWig (plus strand signal of unique reads) 85.9 MB
ENCFF137SPT.bigWig bigWig (plus strand signal of all reads) 103.0 MB
ENCFF159NAN.tsv tsv (gene quantifications) 9.4 MB
ENCFF170SFW.bigWig bigWig (plus strand signal of all reads) 104.0 MB
ENCFF182WKO.bigWig bigWig (plus strand signal of unique reads) 92.0 MB
ENCFF185KVY.bigWig bigWig (minus strand signal of all reads) 99.6 MB
ENCFF204UAT.bigWig bigWig (plus strand signal of all reads) 88.7 MB
ENCFF205XNO.bigWig bigWig (minus strand signal of all reads) 87.2 MB
ENCFF211YXO.bigWig bigWig (minus strand signal of unique reads) 84.6 MB
ENCFF212HHX.bigWig bigWig (plus strand signal of unique reads) 91.3 MB
ENCFF214GLK.tsv tsv (differential expression quantifications) 2.0 MB
ENCFF225YUB.bigWig bigWig (minus strand signal of unique reads) 90.0 MB
ENCFF239MZX.fastq fastq (reads) 2.4 GB
ENCFF269CMF.bam bam (alignments) 4.0 GB
ENCFF272VLN.bigWig bigWig (minus strand signal of unique reads) 88.7 MB
ENCFF277IJI.tsv tsv (transcript quantifications) 24.9 MB
ENCFF280CLW.bigWig bigWig (minus strand signal of all reads) 88.1 MB
ENCFF287QIW.tsv tsv (transcript quantifications) 25.3 MB
ENCFF292NHJ.bigWig bigWig (plus strand signal of all reads) 92.9 MB
ENCFF297BXR.tar tar (differential splicing quantifications) 4.0 MB
ENCFF299JUL.bigWig bigWig (minus strand signal of unique reads) 85.5 MB
ENCFF331KZJ.tsv tsv (gene quantifications) 9.1 MB
ENCFF346WTN.bigWig bigWig (minus strand signal of all reads) 101.5 MB
ENCFF366IZI.tsv tsv (transcript quantifications) 27.4 MB
ENCFF367ZQF.bigWig bigWig (plus strand signal of unique reads) 91.5 MB
ENCFF369HKB.bam bam (transcriptome alignments) 5.5 GB
ENCFF374JER.bigWig bigWig (plus strand signal of unique reads) 81.7 MB
ENCFF404DGN.bigWig bigWig (minus strand signal of all reads) 101.8 MB
ENCFF408MMZ.bigWig bigWig (plus strand signal of all reads) 104.0 MB
ENCFF416OJO.bam bam (alignments) 3.4 GB
ENCFF425GMT.tsv tsv (transcript quantifications) 29.8 MB
ENCFF429LPI.tsv tsv (gene quantifications) 9.1 MB
ENCFF467JRT.bigWig bigWig (minus strand signal of all reads) 93.8 MB
ENCFF471HPZ.bam bam (alignments) 4.3 GB
ENCFF473LCI.bigWig bigWig (plus strand signal of all reads) 93.6 MB
ENCFF493HEA.bigWig bigWig (minus strand signal of unique reads) 84.3 MB
ENCFF494CBW.bigWig bigWig (minus strand signal of unique reads) 80.3 MB
ENCFF509GJM.bam bam (alignments) 3.5 GB
ENCFF542BFZ.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF543GNB.bigWig bigWig (minus strand signal of unique reads) 88.5 MB
ENCFF543NKV.bigWig bigWig (plus strand signal of unique reads) 90.7 MB
ENCFF557RPH.bigWig bigWig (minus strand signal of all reads) 103.0 MB
ENCFF569ZYX.bam bam (alignments) 3.3 GB
ENCFF579HAA.bam bam (alignments) 4.1 GB
ENCFF613FXX.tsv tsv (gene quantifications) 10.4 MB
ENCFF614YFC.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF621FXK.bigWig bigWig (plus strand signal of unique reads) 84.9 MB
ENCFF621RVC.bigWig bigWig (plus strand signal of all reads) 95.3 MB
ENCFF651FDA.bam bam (alignments) 4.1 GB
ENCFF654STK.tsv tsv (transcript quantifications) 29.8 MB
ENCFF659XBD.bam bam (transcriptome alignments) 4.8 GB
ENCFF668MDO.bigWig bigWig (minus strand signal of unique reads) 89.4 MB
ENCFF670GAC.bam bam (alignments) 3.3 GB
ENCFF673STE.bigWig bigWig (plus strand signal of unique reads) 90.7 MB
ENCFF701EPY.bigWig bigWig (plus strand signal of unique reads) 82.3 MB
ENCFF701SBH.fastq fastq (reads) 2.2 GB
ENCFF711CNR.bam bam (transcriptome alignments) 4.8 GB
ENCFF737TPO.bigWig bigWig (plus strand signal of unique reads) 86.7 MB
ENCFF741TJL.bigWig bigWig (minus strand signal of unique reads) 83.2 MB
ENCFF746DPJ.bam bam (alignments) 3.3 GB
ENCFF767VBO.tsv tsv (transcript quantifications) 25.3 MB
ENCFF781MVI.fastq fastq (reads) 2.2 GB
ENCFF785HUE.tsv tsv (transcript quantifications) 27.4 MB
ENCFF811QFV.bigWig bigWig (minus strand signal of unique reads) 89.3 MB
ENCFF814ZSY.bigWig bigWig (plus strand signal of all reads) 90.9 MB
ENCFF832SQY.bigWig bigWig (plus strand signal of unique reads) 87.6 MB
ENCFF837HXF.bam bam (alignments) 4.3 GB
ENCFF855XPF.tsv tsv (gene quantifications) 10.4 MB
ENCFF862PRT.tar tar (differential splicing quantifications) 16.1 MB
ENCFF869JUO.bigWig bigWig (minus strand signal of unique reads) 79.6 MB
ENCFF895IVN.tar tar (differential splicing quantifications) 4.8 MB
ENCFF896QFF.fastq fastq (reads) 2.3 GB
ENCFF903GRC.bigWig bigWig (plus strand signal of all reads) 89.6 MB
ENCFF904JHE.tsv tsv (gene quantifications) 9.5 MB
ENCFF907KHV.bam bam (transcriptome alignments) 5.1 GB
ENCFF958ANN.bigWig bigWig (plus strand signal of unique reads) 91.3 MB
ENCFF963GOI.bigWig bigWig (plus strand signal of all reads) 100.8 MB
ENCFF966PJE.bam bam (transcriptome alignments) 5.1 GB
ENCFF973GTO.bigWig bigWig (plus strand signal of all reads) 102.9 MB
ENCFF986OSQ.bigWig bigWig (minus strand signal of all reads) 92.0 MB
ENCFF990ADX.bam bam (alignments) 3.4 GB
ENCSR867VPL ENCSR · via encode_api

Control ChIP-seq on HepG2

Homo sapiens

14 data files
FileTypeSize
ENCFF026GVE.bam bam (alignments) 2.7 GB
ENCFF057DCQ.bam bam (unfiltered alignments) 4.2 GB
ENCFF144LKW.bam bam (unfiltered alignments) 4.2 GB
ENCFF299MMO.fastq fastq (reads) 3.3 GB
ENCFF311ZFA.bam bam (alignments) 2.3 GB
ENCFF343LLI.bam bam (alignments) 2.7 GB
ENCFF373TTH.bam bam (alignments) 2.9 GB
ENCFF469NRZ.bam bam (alignments) 2.5 GB
ENCFF578GAN.bam bam (unfiltered alignments) 4.5 GB
ENCFF592CBA.fastq fastq (reads) 3.1 GB
ENCFF615CXW.bam bam (unfiltered alignments) 4.7 GB
ENCFF890CQW.bam bam (alignments) 2.9 GB
ENCFF922FTF.bam bam (unfiltered alignments) 4.4 GB
ENCFF928UPR.bam bam (unfiltered alignments) 4.5 GB
ENCSR192FWS ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) input control experiment of RBM22

1 data file
FileTypeSize
ENCFF767MZQ.fastq fastq (reads) 486.8 MB
ENCSR834CED ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) pulldown experiment against NOVA1

13 data files
FileTypeSize
ENCFF208MMN.tsv tsv (library fraction) 1.1 MB
ENCFF510DKF.fastq fastq (reads) 550.0 MB
ENCFF557ODA.fastq fastq (reads) 428.0 MB
ENCFF591ONJ.tsv tsv (enrichment) 41.0 KB
ENCFF657EGF.tsv tsv (enrichment) 10.0 KB
ENCFF666GNP.tsv tsv (enrichment) 688.1 KB
ENCFF666KVW.tsv tsv (library fraction) 264.8 KB
ENCFF773ACP.fastq fastq (reads) 536.5 MB
ENCFF850IFW.fastq fastq (reads) 525.6 MB
ENCFF892LGW.fastq fastq (reads) 562.6 MB
ENCFF953ZVY.tsv tsv (enrichment) 168.0 KB
ENCFF956XSQ.tsv tsv (library fraction) 15.7 KB
ENCFF998MJP.tsv tsv (library fraction) 64.6 KB
ENCSR419XDN ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) pulldown experiment against SECP43

13 data files
FileTypeSize
ENCFF077FYY.tsv tsv (library fraction) 1.1 MB
ENCFF174NLG.tsv tsv (enrichment) 168.0 KB
ENCFF228IGY.fastq fastq (reads) 318.5 MB
ENCFF232FXD.tsv tsv (enrichment) 688.1 KB
ENCFF315DBD.tsv tsv (enrichment) 41.0 KB
ENCFF330UOX.fastq fastq (reads) 566.3 MB
ENCFF339GLP.fastq fastq (reads) 325.7 MB
ENCFF361MIR.tsv tsv (library fraction) 15.5 KB
ENCFF369WZD.fastq fastq (reads) 332.6 MB
ENCFF823RGZ.fastq fastq (reads) 474.2 MB
ENCFF848YLS.tsv tsv (enrichment) 10.0 KB
ENCFF850VYB.tsv tsv (library fraction) 64.5 KB
ENCFF858OFZ.tsv tsv (library fraction) 264.9 KB
ENCSR721PRM ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) input control experiment of RBM6 and RBM24

1 data file
FileTypeSize
ENCFF771ECU.fastq fastq (reads) 508.3 MB
ENCSR206YLC ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) input control experiment of DAZAP1

1 data file
FileTypeSize
ENCFF425XLJ.fastq fastq (reads) 1.5 GB
ENCSR426UUG ENCSR · via encode_api

RNA-seq on HepG2 cells treated with an shRNA knockdown against U2AF2. (U2AF2_BGHLV26)

Homo sapiens

92 data files
FileTypeSize
ENCFF009FDV.bigWig bigWig (plus strand signal of unique reads) 97.2 MB
ENCFF017QBQ.tsv tsv (transcript quantifications) 25.0 MB
ENCFF020XNK.fastq fastq (reads) 4.3 GB
ENCFF040ZTQ.bigWig bigWig (minus strand signal of unique reads) 80.3 MB
ENCFF042BJG.tsv tsv (gene quantifications) 9.1 MB
ENCFF070VVN.tsv tsv (transcript quantifications) 25.4 MB
ENCFF078KBM.tsv tsv (transcript quantifications) 27.4 MB
ENCFF086AAK.bigWig bigWig (minus strand signal of all reads) 105.0 MB
ENCFF087JWQ.bigWig bigWig (minus strand signal of all reads) 91.5 MB
ENCFF088DQK.bigWig bigWig (minus strand signal of unique reads) 81.3 MB
ENCFF095INZ.tsv tsv (transcript quantifications) 29.9 MB
ENCFF111ZVR.tsv tsv (gene quantifications) 9.5 MB
ENCFF114MWB.bam bam (alignments) 4.8 GB
ENCFF127SQI.bam bam (transcriptome alignments) 9.0 GB
ENCFF141OTC.bam bam (alignments) 5.8 GB
ENCFF156DBI.tsv tsv (differential expression quantifications) 3.0 MB
ENCFF194MBK.bigWig bigWig (minus strand signal of unique reads) 93.8 MB
ENCFF200YAW.bigWig bigWig (plus strand signal of unique reads) 78.0 MB
ENCFF211KJD.bigWig bigWig (minus strand signal of all reads) 80.3 MB
ENCFF223TSO.bigWig bigWig (plus strand signal of all reads) 106.1 MB
ENCFF226HAY.bigWig bigWig (minus strand signal of all reads) 77.2 MB
ENCFF229BQW.fastq fastq (reads) 3.5 GB
ENCFF232VOD.bigWig bigWig (plus strand signal of unique reads) 97.1 MB
ENCFF241POH.tsv tsv (differential expression quantifications) 4.3 MB
ENCFF251QKG.bam bam (alignments) 5.7 GB
ENCFF265GYU.bigWig bigWig (minus strand signal of all reads) 105.0 MB
ENCFF275XSY.bam bam (alignments) 4.8 GB
ENCFF295HQC.bigWig bigWig (plus strand signal of all reads) 93.6 MB
ENCFF296HEN.tar tar (differential splicing quantifications) 3.8 MB
ENCFF298TSM.fastq fastq (reads) 3.5 GB
ENCFF330QDA.tsv tsv (gene quantifications) 9.5 MB
ENCFF341UWM.bam bam (alignments) 7.0 GB
ENCFF354AMD.fastq fastq (reads) 4.2 GB
ENCFF388VKE.bam bam (transcriptome alignments) 7.0 GB
ENCFF430MSJ.bigWig bigWig (minus strand signal of unique reads) 80.5 MB
ENCFF436HFC.bigWig bigWig (minus strand signal of unique reads) 93.8 MB
ENCFF443RGB.bigWig bigWig (plus strand signal of unique reads) 83.0 MB
ENCFF460DQD.tsv tsv (differential expression quantifications) 1.8 MB
ENCFF468TPI.bam bam (transcriptome alignments) 8.0 GB
ENCFF509ZWZ.bigWig bigWig (plus strand signal of unique reads) 84.1 MB
ENCFF511YMI.bam bam (alignments) 7.0 GB
ENCFF513QCD.bigWig bigWig (plus strand signal of all reads) 84.5 MB
ENCFF518XDR.tsv tsv (gene quantifications) 10.4 MB
ENCFF556WBA.bigWig bigWig (minus strand signal of all reads) 89.9 MB
ENCFF585UBL.tsv tsv (transcript quantifications) 25.0 MB
ENCFF593OEF.bam bam (alignments) 5.8 GB
ENCFF593XXC.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF607ILG.bigWig bigWig (plus strand signal of all reads) 107.6 MB
ENCFF621XPN.bigWig bigWig (minus strand signal of all reads) 91.5 MB
ENCFF621YBA.tsv tsv (transcript quantifications) 27.4 MB
ENCFF622OVO.bam bam (transcriptome alignments) 10.3 GB
ENCFF628XEJ.bam bam (alignments) 5.7 GB
ENCFF628YHN.bigWig bigWig (plus strand signal of unique reads) 97.1 MB
ENCFF646OVC.tsv tsv (gene quantifications) 10.4 MB
ENCFF675OIC.bigWig bigWig (plus strand signal of unique reads) 92.0 MB
ENCFF683KHJ.bigWig bigWig (plus strand signal of all reads) 79.2 MB
ENCFF691UAH.bigWig bigWig (plus strand signal of all reads) 82.3 MB
ENCFF727CFR.bigWig bigWig (plus strand signal of all reads) 107.6 MB
ENCFF729JJT.bigWig bigWig (plus strand signal of all reads) 91.9 MB
ENCFF733INX.bigWig bigWig (minus strand signal of all reads) 96.0 MB
ENCFF733RZQ.tar tar (differential splicing quantifications) 14.5 MB
ENCFF756AYM.bigWig bigWig (plus strand signal of all reads) 93.7 MB
ENCFF757BCQ.bigWig bigWig (plus strand signal of all reads) 98.7 MB
ENCFF757YXA.bigWig bigWig (plus strand signal of all reads) 96.2 MB
ENCFF768GBJ.bigWig bigWig (plus strand signal of unique reads) 77.6 MB
ENCFF772CVF.bam bam (transcriptome alignments) 7.0 GB
ENCFF773ZIG.bigWig bigWig (minus strand signal of unique reads) 75.4 MB
ENCFF782NKK.bigWig bigWig (minus strand signal of unique reads) 71.5 MB
ENCFF784WES.bam bam (alignments) 5.7 GB
ENCFF788YPR.bigWig bigWig (plus strand signal of all reads) 93.4 MB
ENCFF792JQH.bam bam (alignments) 4.8 GB
ENCFF792PUS.bigWig bigWig (plus strand signal of unique reads) 74.0 MB
ENCFF795MFS.tsv tsv (transcript quantifications) 29.9 MB
ENCFF805OTW.bam bam (transcriptome alignments) 9.0 GB
ENCFF821FZB.bam bam (alignments) 5.7 GB
ENCFF847VNH.bigWig bigWig (minus strand signal of all reads) 93.8 MB
ENCFF869QIO.bigWig bigWig (minus strand signal of all reads) 103.6 MB
ENCFF871REZ.bigWig bigWig (minus strand signal of unique reads) 93.8 MB
ENCFF886YHK.bigWig bigWig (minus strand signal of unique reads) 84.8 MB
ENCFF900BTF.bigWig bigWig (minus strand signal of all reads) 90.8 MB
ENCFF911EJE.bam bam (alignments) 6.8 GB
ENCFF918GDB.bigWig bigWig (minus strand signal of unique reads) 88.8 MB
ENCFF930SEB.tar tar (differential splicing quantifications) 4.6 MB
ENCFF937RHI.bigWig bigWig (plus strand signal of unique reads) 83.2 MB
ENCFF947VNH.bigWig bigWig (minus strand signal of unique reads) 75.2 MB
ENCFF956WXC.bigWig bigWig (minus strand signal of unique reads) 88.5 MB
ENCFF969CLS.tsv tsv (gene quantifications) 9.1 MB
ENCFF977KPO.tsv tsv (differential expression quantifications) 2.0 MB
ENCFF979CDE.bigWig bigWig (plus strand signal of unique reads) 91.5 MB
ENCFF983YXM.tsv tsv (transcript quantifications) 25.4 MB
ENCFF990CHF.bigWig bigWig (plus strand signal of unique reads) 87.9 MB
ENCFF993KHE.bigWig bigWig (minus strand signal of all reads) 82.3 MB
ENCSR499ZCU ENCSR · via encode_api

eCLIP control experiment on HepG2 against SRSF1

Homo sapiens

8 data files
FileTypeSize
ENCFF241ORF.bigWig bigWig (plus strand signal of unique reads) 9.6 MB
ENCFF294BNR.bigWig bigWig (plus strand signal of unique reads) 9.7 MB
ENCFF445NNG.bam bam (alignments) 197.3 MB
ENCFF467FPH.bam bam (alignments) 197.8 MB
ENCFF614VTZ.fastq fastq (reads) 355.8 MB
ENCFF711WPF.bigWig bigWig (minus strand signal of unique reads) 9.4 MB
ENCFF773PUP.bigWig bigWig (minus strand signal of unique reads) 9.4 MB
ENCFF831COI.fastq fastq (reads) 361.1 MB
ENCSR886YYD ENCSR · via encode_api

eCLIP control experiment on HepG2 against SF3B4

Homo sapiens

8 data files
FileTypeSize
ENCFF072CLZ.bam bam (alignments) 122.6 MB
ENCFF270IHA.bigWig bigWig (plus strand signal of unique reads) 6.0 MB
ENCFF347FPD.bigWig bigWig (minus strand signal of unique reads) 5.8 MB
ENCFF477FYI.bigWig bigWig (plus strand signal of unique reads) 6.1 MB
ENCFF673XBX.fastq fastq (reads) 391.7 MB
ENCFF772NLB.fastq fastq (reads) 396.3 MB
ENCFF783VBB.bigWig bigWig (minus strand signal of unique reads) 5.9 MB
ENCFF976CQJ.bam bam (alignments) 120.9 MB
ENCSR399CBP ENCSR · via encode_api

eCLIP control experiment on K562 against LIN28B

Homo sapiens

8 data files
FileTypeSize
ENCFF064SDM.fastq fastq (reads) 325.2 MB
ENCFF237XYU.bigWig bigWig (plus strand signal of unique reads) 9.7 MB
ENCFF431MOD.bigWig bigWig (minus strand signal of unique reads) 7.1 MB
ENCFF760WXW.bigWig bigWig (minus strand signal of unique reads) 9.2 MB
ENCFF846MTA.bigWig bigWig (plus strand signal of unique reads) 9.6 MB
ENCFF870VFV.fastq fastq (reads) 325.9 MB
ENCFF981KYA.bam bam (alignments) 178.7 MB
ENCFF999MGM.bam bam (alignments) 180.2 MB
ENCSR615AAW ENCSR · via encode_api

eCLIP control experiment on K562 against QKI

Homo sapiens

8 data files
FileTypeSize
ENCFF070RME.bam bam (alignments) 427.5 MB
ENCFF100KVV.bigWig bigWig (plus strand signal of unique reads) 20.4 MB
ENCFF296LXE.bigWig bigWig (plus strand signal of unique reads) 20.7 MB
ENCFF362AGG.bigWig bigWig (minus strand signal of unique reads) 20.0 MB
ENCFF430SHW.bigWig bigWig (minus strand signal of unique reads) 19.7 MB
ENCFF620NEF.fastq fastq (reads) 682.5 MB
ENCFF647NVG.fastq fastq (reads) 653.0 MB
ENCFF849FKQ.bam bam (alignments) 420.7 MB
ENCSR129SCO ENCSR · via encode_api

eCLIP control experiment on HepG2 against POLR2G

Homo sapiens

8 data files
FileTypeSize
ENCFF037ZLK.bigWig bigWig (minus strand signal of unique reads) 12.8 MB
ENCFF054YWG.bam bam (alignments) 279.4 MB
ENCFF159BTI.bigWig bigWig (minus strand signal of unique reads) 12.9 MB
ENCFF365RSB.fastq fastq (reads) 513.8 MB
ENCFF431HUP.bam bam (alignments) 283.0 MB
ENCFF534IGJ.fastq fastq (reads) 506.6 MB
ENCFF584MHO.bigWig bigWig (plus strand signal of unique reads) 13.1 MB
ENCFF781RJS.bigWig bigWig (plus strand signal of unique reads) 13.2 MB
ENCSR777PDA ENCSR · via encode_api

eCLIP control experiment on HepG2 against BUD13

Homo sapiens

8 data files
FileTypeSize
ENCFF475DWO.bigWig bigWig (minus strand signal of unique reads) 43.3 MB
ENCFF492HFL.bigWig bigWig (plus strand signal of unique reads) 44.4 MB
ENCFF582HAW.fastq fastq (reads) 1.0 GB
ENCFF599CTL.bigWig bigWig (minus strand signal of unique reads) 44.1 MB
ENCFF624JXG.bam bam (alignments) 1.0 GB
ENCFF705VUW.bigWig bigWig (plus strand signal of unique reads) 45.2 MB
ENCFF908SIL.fastq fastq (reads) 1.1 GB
ENCFF977BAJ.bam bam (alignments) 1.1 GB
ENCSR145PHJ ENCSR · via encode_api

eCLIP control experiment on K562 against SRSF7

Homo sapiens

8 data files
FileTypeSize
ENCFF182OOU.bam bam (alignments) 103.2 MB
ENCFF228PTY.bigWig bigWig (plus strand signal of unique reads) 4.9 MB
ENCFF294TTP.bam bam (alignments) 106.7 MB
ENCFF394FLG.fastq fastq (reads) 220.2 MB
ENCFF671HVM.bigWig bigWig (minus strand signal of unique reads) 4.7 MB
ENCFF770WMT.fastq fastq (reads) 197.4 MB
ENCFF916NEJ.bigWig bigWig (minus strand signal of unique reads) 4.5 MB
ENCFF983ZVX.bigWig bigWig (plus strand signal of unique reads) 4.7 MB
ENCSR550SGC ENCSR · via encode_api

eCLIP control experiment on K562 against AKAP8L

Homo sapiens

8 data files
FileTypeSize
ENCFF013ZUT.bam bam (alignments) 560.5 MB
ENCFF057WTV.bam bam (alignments) 547.1 MB
ENCFF201GQO.bigWig bigWig (minus strand signal of unique reads) 25.9 MB
ENCFF533NOD.bigWig bigWig (plus strand signal of unique reads) 26.7 MB
ENCFF534UAZ.fastq fastq (reads) 584.7 MB
ENCFF635VSR.bigWig bigWig (plus strand signal of unique reads) 26.1 MB
ENCFF670KXN.bigWig bigWig (minus strand signal of unique reads) 25.3 MB
ENCFF741GZP.fastq fastq (reads) 623.7 MB
ENCSR910LAN ENCSR · via encode_api

eCLIP control experiment on K562 against AGGF1

Homo sapiens

8 data files
FileTypeSize
ENCFF132SLV.bam bam (alignments) 711.8 MB
ENCFF418JXF.bigWig bigWig (plus strand signal of unique reads) 33.5 MB
ENCFF469LMX.bigWig bigWig (plus strand signal of unique reads) 33.0 MB
ENCFF528CLV.bigWig bigWig (minus strand signal of unique reads) 32.5 MB
ENCFF590BBN.bigWig bigWig (minus strand signal of unique reads) 32.0 MB
ENCFF725ITK.fastq fastq (reads) 669.0 MB
ENCFF764ZUP.bam bam (alignments) 701.0 MB
ENCFF934XSG.fastq fastq (reads) 627.7 MB
ENCSR750NTM ENCSR · via encode_api

eCLIP control experiment on K562 against METAP2

Homo sapiens

8 data files
FileTypeSize
ENCFF058UPC.bigWig bigWig (minus strand signal of unique reads) 16.7 MB
ENCFF222NYJ.bam bam (alignments) 380.2 MB
ENCFF223RIV.bigWig bigWig (plus strand signal of unique reads) 17.3 MB
ENCFF591UZM.fastq fastq (reads) 560.4 MB
ENCFF671UJO.bigWig bigWig (minus strand signal of unique reads) 17.2 MB
ENCFF832UNJ.fastq fastq (reads) 569.6 MB
ENCFF942TNV.bam bam (alignments) 370.7 MB
ENCFF987PYU.bigWig bigWig (plus strand signal of unique reads) 17.8 MB
ENCSR483GYO ENCSR · via encode_api

Control ChIP-seq in K562

Homo sapiens

14 data files
FileTypeSize
ENCFF092OLM.bam bam (alignments) 1.1 GB
ENCFF126URC.bam bam (alignments) 1.2 GB
ENCFF174MPG.bam bam (unfiltered alignments) 1.5 GB
ENCFF177GKX.bam bam (alignments) 1.1 GB
ENCFF343MYT.fastq fastq (reads) 1.1 GB
ENCFF473DJD.bam bam (unfiltered alignments) 1.6 GB
ENCFF521UDO.fastq fastq (reads) 1.0 GB
ENCFF584ERB.bam bam (alignments) 1.2 GB
ENCFF599SJC.bam bam (unfiltered alignments) 1.5 GB
ENCFF844LWD.bam bam (unfiltered alignments) 1.6 GB
ENCFF938RKY.bam bam (unfiltered alignments) 1.5 GB
ENCFF974LVO.bam bam (alignments) 1.2 GB
ENCFF981RQY.bam bam (unfiltered alignments) 1.6 GB
ENCFF993VCM.bam bam (alignments) 1.2 GB
ENCSR440JAU ENCSR · via encode_api

Control ChIP-seq in K562

Homo sapiens

14 data files
FileTypeSize
ENCFF066PHM.bam bam (unfiltered alignments) 1.6 GB
ENCFF117YMH.bam bam (unfiltered alignments) 1.6 GB
ENCFF317LUD.fastq fastq (reads) 1.1 GB
ENCFF325CNX.bam bam (alignments) 1.2 GB
ENCFF338QTL.fastq fastq (reads) 1.1 GB
ENCFF345ODV.bam bam (alignments) 1.2 GB
ENCFF375EPE.bam bam (unfiltered alignments) 1.6 GB
ENCFF502LLI.bam bam (alignments) 1.2 GB
ENCFF541ALB.bam bam (alignments) 1.2 GB
ENCFF589CMT.bam bam (alignments) 1.2 GB
ENCFF663BEB.bam bam (unfiltered alignments) 1.6 GB
ENCFF716PYI.bam bam (unfiltered alignments) 1.6 GB
ENCFF784BXX.bam bam (unfiltered alignments) 1.6 GB
ENCFF836GUS.bam bam (alignments) 1.2 GB
ENCSR490BSK ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) input control experiment of FUBP3 and HNRNPA0

1 data file
FileTypeSize
ENCFF668WQD.fastq fastq (reads) 473.3 MB
ENCSR391IGH ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) input control experiment of RBM25 and ILF2

1 data file
FileTypeSize
ENCFF248GRF.fastq fastq (reads) 483.4 MB
ENCSR927JUW ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) input control experiment of TARDBP and SRSF9

1 data file
FileTypeSize
ENCFF483NLQ.fastq fastq (reads) 473.4 MB
ENCSR694LKY ENCSR · via encode_api

shRNA knockdown against TIA1 in K562 cells followed by RNA-seq. (TIA1-LV11)

Homo sapiens

92 data files
FileTypeSize
ENCFF004SAE.bigWig bigWig (plus strand signal of all reads) 87.0 MB
ENCFF011BRT.bam bam (alignments) 2.7 GB
ENCFF017JYB.bigWig bigWig (plus strand signal of all reads) 91.0 MB
ENCFF028HTA.tsv tsv (transcript quantifications) 24.9 MB
ENCFF069KJU.bigWig bigWig (minus strand signal of all reads) 89.8 MB
ENCFF088WJW.bam bam (alignments) 3.4 GB
ENCFF102NGU.bigWig bigWig (plus strand signal of unique reads) 80.6 MB
ENCFF102TET.bigWig bigWig (plus strand signal of all reads) 100.0 MB
ENCFF113OUJ.tsv tsv (differential expression quantifications) 5.4 MB
ENCFF143UVJ.bigWig bigWig (minus strand signal of all reads) 85.5 MB
ENCFF146CHZ.bam bam (alignments) 3.7 GB
ENCFF152DGQ.bigWig bigWig (minus strand signal of unique reads) 86.3 MB
ENCFF163KNM.bigWig bigWig (minus strand signal of all reads) 91.2 MB
ENCFF175DGT.tsv tsv (differential expression quantifications) 4.3 MB
ENCFF176BAD.bigWig bigWig (minus strand signal of all reads) 84.1 MB
ENCFF176NQL.bam bam (alignments) 3.4 GB
ENCFF185HBQ.bam bam (alignments) 2.8 GB
ENCFF188VLQ.bigWig bigWig (plus strand signal of unique reads) 73.5 MB
ENCFF193TZO.bigWig bigWig (minus strand signal of unique reads) 78.2 MB
ENCFF197DTQ.bigWig bigWig (minus strand signal of all reads) 74.8 MB
ENCFF207HZX.bigWig bigWig (plus strand signal of all reads) 92.3 MB
ENCFF221MMK.tar tar (differential splicing quantifications) 15.8 MB
ENCFF228TQK.fastq fastq (reads) 1.9 GB
ENCFF235LLH.bigWig bigWig (minus strand signal of unique reads) 68.5 MB
ENCFF235UMA.bam bam (transcriptome alignments) 5.1 GB
ENCFF264EFG.bigWig bigWig (plus strand signal of all reads) 79.2 MB
ENCFF271LZB.bigWig bigWig (minus strand signal of all reads) 97.4 MB
ENCFF272NZP.bigWig bigWig (plus strand signal of unique reads) 73.3 MB
ENCFF279BQU.bigWig bigWig (minus strand signal of all reads) 91.1 MB
ENCFF282VKF.bigWig bigWig (minus strand signal of unique reads) 79.3 MB
ENCFF297YBA.tsv tsv (differential expression quantifications) 1.6 MB
ENCFF305ZLU.bigWig bigWig (plus strand signal of unique reads) 70.4 MB
ENCFF310EXN.tsv tsv (gene quantifications) 10.4 MB
ENCFF310KES.bigWig bigWig (minus strand signal of unique reads) 85.2 MB
ENCFF351RNK.bigWig bigWig (minus strand signal of all reads) 82.2 MB
ENCFF369JRM.bigWig bigWig (plus strand signal of unique reads) 88.3 MB
ENCFF379TOR.tar tar (differential splicing quantifications) 3.5 MB
ENCFF400BRC.tsv tsv (gene quantifications) 9.1 MB
ENCFF410RQP.bigWig bigWig (minus strand signal of unique reads) 71.6 MB
ENCFF424NKN.bam bam (transcriptome alignments) 3.8 GB
ENCFF425JBA.bam bam (alignments) 2.5 GB
ENCFF430YLM.bam bam (alignments) 3.7 GB
ENCFF452BRF.bam bam (transcriptome alignments) 4.3 GB
ENCFF479TJE.bigWig bigWig (minus strand signal of all reads) 77.8 MB
ENCFF491YDW.bigWig bigWig (plus strand signal of all reads) 85.2 MB
ENCFF508LXY.bigWig bigWig (minus strand signal of all reads) 98.7 MB
ENCFF524HXS.tsv tsv (transcript quantifications) 29.8 MB
ENCFF535YUS.tsv tsv (transcript quantifications) 27.4 MB
ENCFF543NRV.tsv tsv (gene quantifications) 9.5 MB
ENCFF584EWM.tar tar (differential splicing quantifications) 4.1 MB
ENCFF613EOO.tsv tsv (transcript quantifications) 24.9 MB
ENCFF615GNU.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF622BGG.bam bam (alignments) 3.5 GB
ENCFF646JMV.bigWig bigWig (minus strand signal of unique reads) 71.7 MB
ENCFF647VRD.fastq fastq (reads) 1.7 GB
ENCFF662RRN.bam bam (alignments) 2.5 GB
ENCFF675IKK.bam bam (alignments) 3.2 GB
ENCFF685MQS.bam bam (alignments) 2.5 GB
ENCFF695KLT.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF720INO.bigWig bigWig (minus strand signal of unique reads) 79.0 MB
ENCFF734MLK.bigWig bigWig (minus strand signal of unique reads) 78.3 MB
ENCFF746TUO.bigWig bigWig (plus strand signal of unique reads) 80.3 MB
ENCFF758JMM.tsv tsv (transcript quantifications) 27.4 MB
ENCFF760OXA.bigWig bigWig (plus strand signal of unique reads) 80.1 MB
ENCFF768ITC.bigWig bigWig (plus strand signal of unique reads) 77.2 MB
ENCFF773CAF.fastq fastq (reads) 2.0 GB
ENCFF786XUO.bigWig bigWig (minus strand signal of unique reads) 78.7 MB
ENCFF793XTO.bigWig bigWig (minus strand signal of all reads) 98.7 MB
ENCFF802HCH.bigWig bigWig (plus strand signal of all reads) 98.7 MB
ENCFF804IVU.tsv tsv (transcript quantifications) 29.8 MB
ENCFF805XER.bigWig bigWig (plus strand signal of unique reads) 88.4 MB
ENCFF817GNV.bigWig bigWig (plus strand signal of unique reads) 87.3 MB
ENCFF817HQB.tsv tsv (gene quantifications) 10.4 MB
ENCFF822RIG.bigWig bigWig (plus strand signal of all reads) 83.7 MB
ENCFF824NGT.bigWig bigWig (plus strand signal of all reads) 76.2 MB
ENCFF832EAU.bam bam (alignments) 2.7 GB
ENCFF845KED.fastq fastq (reads) 1.8 GB
ENCFF857BOC.tsv tsv (transcript quantifications) 25.3 MB
ENCFF877QGI.bigWig bigWig (minus strand signal of unique reads) 75.1 MB
ENCFF882HQD.tsv tsv (gene quantifications) 9.5 MB
ENCFF900ZEJ.tsv tsv (gene quantifications) 9.1 MB
ENCFF904PDQ.bam bam (transcriptome alignments) 4.6 GB
ENCFF923VLV.bam bam (transcriptome alignments) 4.3 GB
ENCFF923VOP.bigWig bigWig (plus strand signal of all reads) 100.0 MB
ENCFF927FBT.bigWig bigWig (plus strand signal of all reads) 77.8 MB
ENCFF931VMU.bigWig bigWig (plus strand signal of unique reads) 81.2 MB
ENCFF952TQT.bigWig bigWig (plus strand signal of all reads) 92.3 MB
ENCFF955XNH.bigWig bigWig (minus strand signal of unique reads) 86.1 MB
ENCFF957AJT.bam bam (transcriptome alignments) 3.9 GB
ENCFF965GGA.bigWig bigWig (minus strand signal of all reads) 76.7 MB
ENCFF976JSI.tsv tsv (transcript quantifications) 25.3 MB
ENCFF989UWS.bigWig bigWig (plus strand signal of unique reads) 81.1 MB
ENCSR153GKS ENCSR · via encode_api

RNA-seq on HepG2 cells treated with an shRNA knockdown against SRFBP1. (SRFBP1_BGHLV37)

Homo sapiens

92 data files
FileTypeSize
ENCFF041MUH.bam bam (alignments) 7.5 GB
ENCFF056OHL.tsv tsv (differential expression quantifications) 4.6 MB
ENCFF059SQM.bam bam (transcriptome alignments) 9.7 GB
ENCFF075GWG.bigWig bigWig (minus strand signal of unique reads) 99.7 MB
ENCFF087WDY.bam bam (alignments) 5.1 GB
ENCFF097KXE.bigWig bigWig (plus strand signal of unique reads) 101.8 MB
ENCFF101WFD.bam bam (alignments) 6.2 GB
ENCFF105DOF.bigWig bigWig (minus strand signal of unique reads) 127.6 MB
ENCFF118VIL.bigWig bigWig (minus strand signal of unique reads) 99.4 MB
ENCFF123WUQ.bam bam (transcriptome alignments) 6.4 GB
ENCFF128VFG.bigWig bigWig (plus strand signal of all reads) 113.6 MB
ENCFF131EFQ.bigWig bigWig (plus strand signal of unique reads) 94.0 MB
ENCFF137BRQ.bigWig bigWig (minus strand signal of unique reads) 119.6 MB
ENCFF137SYV.bigWig bigWig (plus strand signal of unique reads) 120.7 MB
ENCFF158TSZ.tsv tsv (transcript quantifications) 29.8 MB
ENCFF163RCJ.bigWig bigWig (plus strand signal of unique reads) 102.7 MB
ENCFF174YFP.bam bam (alignments) 7.7 GB
ENCFF182NGK.fastq fastq (reads) 2.8 GB
ENCFF205QST.tar tar (differential splicing quantifications) 6.2 MB
ENCFF224HBA.bigWig bigWig (plus strand signal of unique reads) 97.4 MB
ENCFF229COY.bigWig bigWig (plus strand signal of unique reads) 102.1 MB
ENCFF260PTI.tsv tsv (transcript quantifications) 25.3 MB
ENCFF271GSI.tsv tsv (gene quantifications) 9.5 MB
ENCFF273OLK.bam bam (transcriptome alignments) 7.3 GB
ENCFF275ZLW.bam bam (alignments) 4.0 GB
ENCFF285JLM.bigWig bigWig (minus strand signal of all reads) 126.0 MB
ENCFF329RBB.bigWig bigWig (minus strand signal of unique reads) 121.8 MB
ENCFF338ZPR.bigWig bigWig (plus strand signal of unique reads) 124.7 MB
ENCFF350RQR.bigWig bigWig (minus strand signal of all reads) 131.9 MB
ENCFF375YMM.fastq fastq (reads) 4.3 GB
ENCFF380NVB.bigWig bigWig (plus strand signal of all reads) 143.7 MB
ENCFF382VKM.tsv tsv (gene quantifications) 10.4 MB
ENCFF399AVL.bigWig bigWig (plus strand signal of all reads) 144.3 MB
ENCFF410AYN.bigWig bigWig (plus strand signal of unique reads) 130.4 MB
ENCFF419XWM.bam bam (transcriptome alignments) 11.1 GB
ENCFF428MLJ.bigWig bigWig (minus strand signal of unique reads) 127.4 MB
ENCFF435LUO.fastq fastq (reads) 2.8 GB
ENCFF438XUW.bam bam (alignments) 6.1 GB
ENCFF463VMF.tsv tsv (transcript quantifications) 29.8 MB
ENCFF476ORF.tsv tsv (gene quantifications) 9.1 MB
ENCFF514PPK.tsv tsv (differential expression quantifications) 2.0 MB
ENCFF515BUM.tsv tsv (transcript quantifications) 24.9 MB
ENCFF535THG.bam bam (alignments) 4.9 GB
ENCFF552LUA.bam bam (alignments) 6.1 GB
ENCFF558IWO.tsv tsv (transcript quantifications) 24.9 MB
ENCFF564DTJ.bigWig bigWig (minus strand signal of all reads) 98.8 MB
ENCFF568JKD.bigWig bigWig (plus strand signal of unique reads) 97.6 MB
ENCFF611QGQ.tsv tsv (transcript quantifications) 27.5 MB
ENCFF612DMP.bigWig bigWig (minus strand signal of all reads) 142.5 MB
ENCFF612TTX.bigWig bigWig (minus strand signal of unique reads) 95.3 MB
ENCFF623OJN.tar tar (differential splicing quantifications) 4.7 MB
ENCFF630FZK.bigWig bigWig (minus strand signal of unique reads) 117.8 MB
ENCFF636FHP.bigWig bigWig (minus strand signal of all reads) 101.0 MB
ENCFF642KQQ.bam bam (alignments) 4.0 GB
ENCFF648RKD.fastq fastq (reads) 4.2 GB
ENCFF649CJS.bigWig bigWig (plus strand signal of all reads) 100.4 MB
ENCFF659KJG.bigWig bigWig (plus strand signal of all reads) 102.3 MB
ENCFF662ZDW.bigWig bigWig (plus strand signal of all reads) 127.8 MB
ENCFF671NTX.bigWig bigWig (plus strand signal of all reads) 130.2 MB
ENCFF685MTI.bigWig bigWig (minus strand signal of all reads) 142.0 MB
ENCFF686WFA.bigWig bigWig (plus strand signal of all reads) 134.0 MB
ENCFF718HYK.tsv tsv (differential expression quantifications) 5.7 MB
ENCFF722SFE.tsv tsv (transcript quantifications) 25.3 MB
ENCFF724TZX.tsv tsv (differential expression quantifications) 3.0 MB
ENCFF734XZX.bigWig bigWig (plus strand signal of unique reads) 130.6 MB
ENCFF734ZXN.bigWig bigWig (plus strand signal of all reads) 113.0 MB
ENCFF741NNS.bigWig bigWig (minus strand signal of all reads) 112.1 MB
ENCFF765FOU.bam bam (transcriptome alignments) 6.3 GB
ENCFF774QYQ.bigWig bigWig (plus strand signal of all reads) 105.6 MB
ENCFF786QHM.tar tar (differential splicing quantifications) 17.4 MB
ENCFF788UIM.bigWig bigWig (minus strand signal of unique reads) 95.2 MB
ENCFF790RAS.bigWig bigWig (minus strand signal of all reads) 104.1 MB
ENCFF792VLN.tsv tsv (gene quantifications) 9.1 MB
ENCFF797VKI.tsv tsv (transcript quantifications) 27.4 MB
ENCFF805WFO.bigWig bigWig (minus strand signal of all reads) 128.4 MB
ENCFF857HXC.bam bam (alignments) 4.1 GB
ENCFF858IXC.bam bam (alignments) 5.1 GB
ENCFF859JFO.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF862MLJ.bam bam (transcriptome alignments) 9.7 GB
ENCFF872RBA.bigWig bigWig (plus strand signal of all reads) 113.6 MB
ENCFF877ZES.bigWig bigWig (minus strand signal of unique reads) 127.6 MB
ENCFF882LZA.tsv tsv (gene quantifications) 9.5 MB
ENCFF886PMU.tsv tsv (gene quantifications) 10.4 MB
ENCFF888QPM.bigWig bigWig (minus strand signal of unique reads) 91.7 MB
ENCFF901HFD.bigWig bigWig (plus strand signal of unique reads) 130.7 MB
ENCFF903JFA.bigWig bigWig (minus strand signal of all reads) 111.6 MB
ENCFF906NWE.bigWig bigWig (minus strand signal of unique reads) 100.3 MB
ENCFF913RYK.bigWig bigWig (minus strand signal of all reads) 142.5 MB
ENCFF915DGC.bigWig bigWig (plus strand signal of unique reads) 122.3 MB
ENCFF919UOJ.bam bam (alignments) 7.7 GB
ENCFF957TDN.bigWig bigWig (plus strand signal of all reads) 144.4 MB
ENCFF987YKM.bigWig bigWig (minus strand signal of all reads) 112.1 MB
ENCSR631RFX ENCSR · via encode_api

RNA-seq on K562 cells treated with an shRNA knockdown against MTPAP. (MTPAP_BGKLV34)

Homo sapiens

92 data files
FileTypeSize
ENCFF004ZMU.bam bam (transcriptome alignments) 4.9 GB
ENCFF018VLS.bigWig bigWig (minus strand signal of all reads) 99.1 MB
ENCFF037RUR.bigWig bigWig (minus strand signal of all reads) 97.0 MB
ENCFF041CXZ.tsv tsv (gene quantifications) 9.5 MB
ENCFF081KAQ.bam bam (transcriptome alignments) 5.6 GB
ENCFF084JGP.bigWig bigWig (plus strand signal of unique reads) 89.5 MB
ENCFF107XDO.bigWig bigWig (minus strand signal of all reads) 109.9 MB
ENCFF111IPO.bigWig bigWig (minus strand signal of unique reads) 88.1 MB
ENCFF123NVW.bigWig bigWig (plus strand signal of unique reads) 90.0 MB
ENCFF138GBS.tsv tsv (transcript quantifications) 24.9 MB
ENCFF163XRC.tar tar (differential splicing quantifications) 4.9 MB
ENCFF166WDS.tsv tsv (gene quantifications) 10.4 MB
ENCFF180OIB.bigWig bigWig (plus strand signal of unique reads) 81.9 MB
ENCFF188EBK.bam bam (transcriptome alignments) 4.9 GB
ENCFF199VRU.bam bam (alignments) 4.2 GB
ENCFF208YDD.bigWig bigWig (minus strand signal of unique reads) 88.3 MB
ENCFF232SLV.bigWig bigWig (plus strand signal of all reads) 90.5 MB
ENCFF233GBK.tsv tsv (gene quantifications) 10.4 MB
ENCFF251TOW.bigWig bigWig (minus strand signal of all reads) 94.4 MB
ENCFF257JDO.bigWig bigWig (plus strand signal of unique reads) 78.1 MB
ENCFF278ZWN.bigWig bigWig (plus strand signal of all reads) 95.2 MB
ENCFF283ULS.bam bam (alignments) 4.2 GB
ENCFF287RFQ.bam bam (alignments) 5.0 GB
ENCFF288JET.bigWig bigWig (plus strand signal of all reads) 110.7 MB
ENCFF290ARC.fastq fastq (reads) 2.3 GB
ENCFF307WCE.tsv tsv (transcript quantifications) 27.5 MB
ENCFF314ABY.bigWig bigWig (plus strand signal of unique reads) 89.0 MB
ENCFF337EZF.bigWig bigWig (minus strand signal of all reads) 109.9 MB
ENCFF342QPH.bigWig bigWig (minus strand signal of unique reads) 95.7 MB
ENCFF347DLH.bigWig bigWig (minus strand signal of all reads) 89.3 MB
ENCFF355NQQ.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF370XSN.bigWig bigWig (plus strand signal of all reads) 88.3 MB
ENCFF381BHH.bigWig bigWig (minus strand signal of unique reads) 76.2 MB
ENCFF383RFA.bigWig bigWig (plus strand signal of all reads) 85.0 MB
ENCFF386RJX.bam bam (alignments) 5.2 GB
ENCFF389AYD.bigWig bigWig (minus strand signal of all reads) 101.4 MB
ENCFF391PLF.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF393ZJU.tsv tsv (transcript quantifications) 25.3 MB
ENCFF400GQQ.bigWig bigWig (plus strand signal of unique reads) 90.0 MB
ENCFF403KED.bam bam (alignments) 3.7 GB
ENCFF405REA.tsv tsv (gene quantifications) 9.1 MB
ENCFF412TXK.bam bam (alignments) 4.6 GB
ENCFF438MFN.bam bam (transcriptome alignments) 5.6 GB
ENCFF448AKP.bigWig bigWig (plus strand signal of unique reads) 96.3 MB
ENCFF453OHH.bigWig bigWig (minus strand signal of unique reads) 95.4 MB
ENCFF455TOI.fastq fastq (reads) 2.4 GB
ENCFF479EPT.tsv tsv (gene quantifications) 9.1 MB
ENCFF491FHA.fastq fastq (reads) 2.7 GB
ENCFF504BUN.bam bam (alignments) 4.4 GB
ENCFF518OEW.tar tar (differential splicing quantifications) 16.3 MB
ENCFF521WTJ.bigWig bigWig (plus strand signal of unique reads) 97.5 MB
ENCFF541ZLO.bigWig bigWig (plus strand signal of unique reads) 83.3 MB
ENCFF559DZV.bigWig bigWig (plus strand signal of unique reads) 88.8 MB
ENCFF568ITK.fastq fastq (reads) 2.7 GB
ENCFF586CAC.bigWig bigWig (plus strand signal of unique reads) 84.9 MB
ENCFF592QYN.bigWig bigWig (minus strand signal of unique reads) 87.8 MB
ENCFF605FCL.bigWig bigWig (plus strand signal of unique reads) 97.4 MB
ENCFF609ONW.bigWig bigWig (plus strand signal of all reads) 92.6 MB
ENCFF614OGH.tsv tsv (differential expression quantifications) 4.5 MB
ENCFF623FJC.bam bam (alignments) 4.2 GB
ENCFF632QYE.bigWig bigWig (minus strand signal of all reads) 101.4 MB
ENCFF641FZV.bigWig bigWig (plus strand signal of all reads) 98.4 MB
ENCFF648TYN.bigWig bigWig (minus strand signal of unique reads) 82.8 MB
ENCFF687RCP.bigWig bigWig (plus strand signal of all reads) 110.7 MB
ENCFF687YHC.bigWig bigWig (plus strand signal of all reads) 99.8 MB
ENCFF719NQQ.bigWig bigWig (plus strand signal of all reads) 102.2 MB
ENCFF752OUH.tar tar (differential splicing quantifications) 4.2 MB
ENCFF763MMP.bigWig bigWig (minus strand signal of unique reads) 94.6 MB
ENCFF779FMB.bam bam (transcriptome alignments) 5.7 GB
ENCFF782ARO.tsv tsv (transcript quantifications) 24.9 MB
ENCFF782RHD.bigWig bigWig (plus strand signal of all reads) 108.1 MB
ENCFF786WHJ.tsv tsv (transcript quantifications) 29.8 MB
ENCFF796PIP.bam bam (alignments) 3.6 GB
ENCFF798PXF.tsv tsv (transcript quantifications) 29.8 MB
ENCFF802HWL.tsv tsv (transcript quantifications) 27.4 MB
ENCFF804PNN.bam bam (alignments) 3.6 GB
ENCFF807ENO.bigWig bigWig (minus strand signal of all reads) 91.2 MB
ENCFF812QIA.bigWig bigWig (minus strand signal of all reads) 87.6 MB
ENCFF815YXP.bam bam (alignments) 4.6 GB
ENCFF819FFY.bam bam (transcriptome alignments) 6.5 GB
ENCFF824TRK.tsv tsv (transcript quantifications) 25.3 MB
ENCFF833BON.tsv tsv (differential expression quantifications) 2.0 MB
ENCFF849YDP.bigWig bigWig (minus strand signal of unique reads) 80.5 MB
ENCFF871URP.bigWig bigWig (minus strand signal of all reads) 83.8 MB
ENCFF883KJG.tsv tsv (differential expression quantifications) 2.6 MB
ENCFF910GXB.bigWig bigWig (minus strand signal of all reads) 107.2 MB
ENCFF931KCK.bigWig bigWig (minus strand signal of unique reads) 81.5 MB
ENCFF951GSQ.bigWig bigWig (minus strand signal of unique reads) 87.1 MB
ENCFF970SUH.bigWig bigWig (plus strand signal of all reads) 102.2 MB
ENCFF975BKN.bigWig bigWig (minus strand signal of unique reads) 87.3 MB
ENCFF994UAY.bam bam (alignments) 5.2 GB
ENCFF996EDN.tsv tsv (gene quantifications) 9.4 MB
ENCSR527QNC ENCSR · via encode_api

RNA-seq on HepG2 cells treated with an shRNA knockdown against TARDBP. (TARDBP_BGHLV35)

Homo sapiens

92 data files
FileTypeSize
ENCFF012AES.tsv tsv (differential expression quantifications) 4.3 MB
ENCFF038IKU.bigWig bigWig (minus strand signal of all reads) 75.8 MB
ENCFF042AQN.bigWig bigWig (plus strand signal of all reads) 73.0 MB
ENCFF043APE.bigWig bigWig (minus strand signal of all reads) 65.8 MB
ENCFF056GEC.bigWig bigWig (plus strand signal of unique reads) 69.0 MB
ENCFF069LRZ.bigWig bigWig (minus strand signal of all reads) 75.8 MB
ENCFF086EKI.tar tar (differential splicing quantifications) 14.7 MB
ENCFF090SLK.bigWig bigWig (minus strand signal of unique reads) 67.5 MB
ENCFF095MQH.bam bam (transcriptome alignments) 6.9 GB
ENCFF102YEM.bam bam (alignments) 4.9 GB
ENCFF111BQS.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF120HUH.tsv tsv (transcript quantifications) 29.9 MB
ENCFF124DEQ.bigWig bigWig (minus strand signal of unique reads) 55.8 MB
ENCFF159WTL.tsv tsv (gene quantifications) 10.4 MB
ENCFF163FIC.tsv tsv (transcript quantifications) 25.4 MB
ENCFF164TAE.bigWig bigWig (plus strand signal of unique reads) 65.9 MB
ENCFF168EWZ.tsv tsv (transcript quantifications) 25.4 MB
ENCFF168GJS.bigWig bigWig (plus strand signal of all reads) 76.9 MB
ENCFF169OQJ.tsv tsv (gene quantifications) 9.5 MB
ENCFF176QCC.tsv tsv (transcript quantifications) 27.3 MB
ENCFF181SMI.bigWig bigWig (plus strand signal of all reads) 66.7 MB
ENCFF231MBO.bigWig bigWig (plus strand signal of all reads) 76.9 MB
ENCFF246URB.bam bam (alignments) 5.1 GB
ENCFF305WCB.bigWig bigWig (minus strand signal of all reads) 63.5 MB
ENCFF306FRF.fastq fastq (reads) 3.6 GB
ENCFF309GPC.bigWig bigWig (plus strand signal of unique reads) 61.4 MB
ENCFF312DHO.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF312ZZU.bigWig bigWig (minus strand signal of unique reads) 61.9 MB
ENCFF321VRY.bam bam (alignments) 5.9 GB
ENCFF344RIW.bigWig bigWig (plus strand signal of all reads) 69.2 MB
ENCFF357VGT.bigWig bigWig (plus strand signal of unique reads) 59.6 MB
ENCFF362LCK.bigWig bigWig (minus strand signal of all reads) 68.1 MB
ENCFF406RVU.bigWig bigWig (minus strand signal of all reads) 71.9 MB
ENCFF410UHV.tsv tsv (transcript quantifications) 25.0 MB
ENCFF411ZDQ.bigWig bigWig (minus strand signal of all reads) 61.8 MB
ENCFF424BJP.fastq fastq (reads) 3.4 GB
ENCFF431XCI.bam bam (alignments) 5.1 GB
ENCFF439QSF.bigWig bigWig (plus strand signal of all reads) 62.7 MB
ENCFF451HZQ.bigWig bigWig (minus strand signal of all reads) 75.2 MB
ENCFF468NQR.bigWig bigWig (minus strand signal of unique reads) 64.2 MB
ENCFF469BRI.tsv tsv (gene quantifications) 9.1 MB
ENCFF485UXT.tsv tsv (transcript quantifications) 25.0 MB
ENCFF493RDO.bigWig bigWig (minus strand signal of unique reads) 58.2 MB
ENCFF498VOW.bam bam (alignments) 4.9 GB
ENCFF501AVP.bigWig bigWig (minus strand signal of all reads) 71.9 MB
ENCFF526RHY.tsv tsv (gene quantifications) 9.5 MB
ENCFF528KSB.bigWig bigWig (plus strand signal of unique reads) 68.9 MB
ENCFF536MVG.bam bam (alignments) 5.0 GB
ENCFF579HIE.tar tar (differential splicing quantifications) 2.9 MB
ENCFF594BLL.bigWig bigWig (plus strand signal of unique reads) 64.0 MB
ENCFF600CRN.bigWig bigWig (minus strand signal of unique reads) 59.1 MB
ENCFF600TNN.bigWig bigWig (plus strand signal of all reads) 72.7 MB
ENCFF620WMP.tsv tsv (differential expression quantifications) 2.0 MB
ENCFF632TBU.bigWig bigWig (plus strand signal of all reads) 64.6 MB
ENCFF633QLC.bigWig bigWig (minus strand signal of unique reads) 64.3 MB
ENCFF637BLZ.fastq fastq (reads) 3.3 GB
ENCFF661OCW.bigWig bigWig (plus strand signal of unique reads) 65.9 MB
ENCFF668ZKT.bigWig bigWig (minus strand signal of all reads) 64.8 MB
ENCFF675TCE.bigWig bigWig (minus strand signal of all reads) 61.0 MB
ENCFF682WVW.fastq fastq (reads) 3.4 GB
ENCFF685UUG.bigWig bigWig (plus strand signal of unique reads) 63.3 MB
ENCFF694GMG.tsv tsv (gene quantifications) 10.4 MB
ENCFF731FWF.bigWig bigWig (minus strand signal of unique reads) 64.2 MB
ENCFF754LCZ.bam bam (alignments) 4.9 GB
ENCFF758XOV.tar tar (differential splicing quantifications) 3.6 MB
ENCFF759ZRY.bam bam (alignments) 5.8 GB
ENCFF768JWB.tsv tsv (transcript quantifications) 29.9 MB
ENCFF781XNI.bigWig bigWig (minus strand signal of all reads) 71.7 MB
ENCFF790OAZ.bam bam (transcriptome alignments) 6.9 GB
ENCFF825OXQ.bigWig bigWig (minus strand signal of unique reads) 67.4 MB
ENCFF835ZPC.bam bam (alignments) 6.0 GB
ENCFF852DGE.bigWig bigWig (minus strand signal of unique reads) 67.2 MB
ENCFF867RLN.tsv tsv (transcript quantifications) 27.3 MB
ENCFF874RIV.bam bam (alignments) 6.1 GB
ENCFF887FYO.bigWig bigWig (plus strand signal of unique reads) 65.9 MB
ENCFF892JEH.bam bam (transcriptome alignments) 7.8 GB
ENCFF897AQM.bigWig bigWig (plus strand signal of all reads) 65.9 MB
ENCFF916ARO.bam bam (transcriptome alignments) 6.9 GB
ENCFF922TAU.bigWig bigWig (plus strand signal of unique reads) 60.6 MB
ENCFF924ZVK.bigWig bigWig (plus strand signal of all reads) 76.2 MB
ENCFF930AKS.tsv tsv (gene quantifications) 9.1 MB
ENCFF934NGG.bam bam (alignments) 6.1 GB
ENCFF938TRE.bigWig bigWig (plus strand signal of all reads) 62.1 MB
ENCFF948YWX.bigWig bigWig (plus strand signal of unique reads) 68.8 MB
ENCFF949DTR.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF950WLQ.bam bam (transcriptome alignments) 7.8 GB
ENCFF952FHE.bigWig bigWig (minus strand signal of unique reads) 62.5 MB
ENCFF964JRF.bam bam (transcriptome alignments) 6.9 GB
ENCFF969FLX.bigWig bigWig (plus strand signal of all reads) 73.1 MB
ENCFF977OVY.bigWig bigWig (plus strand signal of unique reads) 57.3 MB
ENCFF981FEV.bigWig bigWig (minus strand signal of unique reads) 59.9 MB
ENCFF997NWS.bam bam (alignments) 5.9 GB
ENCSR978JXM ENCSR · via encode_api

eCLIP control experiment on K562 against SAFB2

Homo sapiens

8 data files
FileTypeSize
ENCFF140UJJ.bam bam (alignments) 421.4 MB
ENCFF150YLM.bigWig bigWig (plus strand signal of unique reads) 22.0 MB
ENCFF267IFC.bigWig bigWig (minus strand signal of unique reads) 21.2 MB
ENCFF387LLC.bigWig bigWig (minus strand signal of unique reads) 21.3 MB
ENCFF576HVU.bigWig bigWig (plus strand signal of unique reads) 22.0 MB
ENCFF598NHN.fastq fastq (reads) 569.2 MB
ENCFF698YHW.fastq fastq (reads) 592.3 MB
ENCFF842FRH.bam bam (alignments) 423.8 MB
ENCSR047IUS ENCSR · via encode_api

RNA-seq on K562 cells treated with an shRNA knockdown against HNRNPU. (HNRNPU_BGKLV21-B)

Homo sapiens

92 data files
FileTypeSize
ENCFF057FHG.bigWig bigWig (plus strand signal of unique reads) 97.1 MB
ENCFF078BYY.bigWig bigWig (plus strand signal of all reads) 107.6 MB
ENCFF082XJZ.bigWig bigWig (minus strand signal of unique reads) 94.9 MB
ENCFF116JSM.bam bam (transcriptome alignments) 5.9 GB
ENCFF119HII.bam bam (transcriptome alignments) 5.1 GB
ENCFF124MRG.bam bam (alignments) 3.6 GB
ENCFF142EEK.bigWig bigWig (plus strand signal of unique reads) 93.1 MB
ENCFF148DZK.bam bam (transcriptome alignments) 5.8 GB
ENCFF167VEV.bam bam (alignments) 3.2 GB
ENCFF170QNF.bigWig bigWig (minus strand signal of all reads) 108.2 MB
ENCFF181ERN.bigWig bigWig (plus strand signal of unique reads) 82.8 MB
ENCFF185QWH.bigWig bigWig (plus strand signal of all reads) 89.5 MB
ENCFF187PGH.bam bam (alignments) 4.6 GB
ENCFF188BKI.tsv tsv (differential expression quantifications) 3.0 MB
ENCFF191KNP.bigWig bigWig (minus strand signal of unique reads) 83.0 MB
ENCFF196VEP.tsv tsv (gene quantifications) 9.5 MB
ENCFF207RVM.tsv tsv (gene quantifications) 9.1 MB
ENCFF218MYB.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF241DHX.fastq fastq (reads) 2.2 GB
ENCFF248ZDM.tsv tsv (gene quantifications) 9.5 MB
ENCFF249YOJ.tar tar (differential splicing quantifications) 4.3 MB
ENCFF254JSG.tsv tsv (differential expression quantifications) 4.4 MB
ENCFF256JBK.bigWig bigWig (minus strand signal of unique reads) 90.8 MB
ENCFF267GGC.bigWig bigWig (minus strand signal of all reads) 89.2 MB
ENCFF295PVX.bigWig bigWig (minus strand signal of unique reads) 88.0 MB
ENCFF298EXX.tsv tsv (transcript quantifications) 24.9 MB
ENCFF361EHT.bam bam (transcriptome alignments) 5.1 GB
ENCFF367ZRJ.bigWig bigWig (plus strand signal of all reads) 109.4 MB
ENCFF373NYI.bigWig bigWig (plus strand signal of all reads) 109.6 MB
ENCFF405HWW.tsv tsv (transcript quantifications) 29.8 MB
ENCFF408WRT.bigWig bigWig (minus strand signal of all reads) 91.1 MB
ENCFF409MEI.tsv tsv (transcript quantifications) 27.5 MB
ENCFF424MEF.bam bam (alignments) 4.6 GB
ENCFF425SLM.bigWig bigWig (plus strand signal of all reads) 97.4 MB
ENCFF432QAI.bigWig bigWig (minus strand signal of all reads) 99.5 MB
ENCFF449XHR.bam bam (alignments) 4.1 GB
ENCFF467HGK.bam bam (alignments) 3.6 GB
ENCFF479RPH.bigWig bigWig (plus strand signal of all reads) 100.8 MB
ENCFF495OSJ.bam bam (transcriptome alignments) 5.9 GB
ENCFF528AIJ.bigWig bigWig (minus strand signal of all reads) 108.0 MB
ENCFF537ILH.bigWig bigWig (minus strand signal of unique reads) 82.6 MB
ENCFF541ADB.bigWig bigWig (plus strand signal of unique reads) 89.7 MB
ENCFF545VQO.bigWig bigWig (plus strand signal of all reads) 100.8 MB
ENCFF550FBL.tsv tsv (transcript quantifications) 27.3 MB
ENCFF552ESV.bigWig bigWig (plus strand signal of unique reads) 85.2 MB
ENCFF567QRC.bigWig bigWig (minus strand signal of all reads) 106.2 MB
ENCFF577EOK.fastq fastq (reads) 2.2 GB
ENCFF580FDX.tar tar (differential splicing quantifications) 17.1 MB
ENCFF595VVO.bigWig bigWig (plus strand signal of unique reads) 90.2 MB
ENCFF606JPY.bigWig bigWig (plus strand signal of all reads) 100.3 MB
ENCFF614ZCP.bam bam (alignments) 3.3 GB
ENCFF616IYG.bam bam (alignments) 4.4 GB
ENCFF647WNO.bigWig bigWig (minus strand signal of unique reads) 90.4 MB
ENCFF658SHQ.tsv tsv (transcript quantifications) 24.9 MB
ENCFF661TJB.bigWig bigWig (plus strand signal of all reads) 100.9 MB
ENCFF681ZEB.bam bam (alignments) 4.1 GB
ENCFF698DQF.fastq fastq (reads) 2.5 GB
ENCFF712PQN.bigWig bigWig (plus strand signal of all reads) 98.7 MB
ENCFF712RED.tsv tsv (gene quantifications) 10.4 MB
ENCFF715LQM.bigWig bigWig (minus strand signal of unique reads) 80.5 MB
ENCFF735KUJ.bigWig bigWig (minus strand signal of all reads) 87.7 MB
ENCFF744FRY.tar tar (differential splicing quantifications) 5.4 MB
ENCFF759TJS.bigWig bigWig (minus strand signal of all reads) 95.4 MB
ENCFF797URA.bigWig bigWig (plus strand signal of unique reads) 84.6 MB
ENCFF798OXL.tsv tsv (transcript quantifications) 29.8 MB
ENCFF799NEG.bigWig bigWig (minus strand signal of all reads) 98.9 MB
ENCFF799PKF.bam bam (alignments) 3.9 GB
ENCFF811KDI.fastq fastq (reads) 2.6 GB
ENCFF814SUO.bigWig bigWig (minus strand signal of unique reads) 87.6 MB
ENCFF822RVL.bigWig bigWig (plus strand signal of unique reads) 90.6 MB
ENCFF839VOE.bigWig bigWig (minus strand signal of unique reads) 95.9 MB
ENCFF854MEE.bam bam (transcriptome alignments) 6.8 GB
ENCFF854ZQF.bam bam (alignments) 3.6 GB
ENCFF889JXY.bigWig bigWig (plus strand signal of all reads) 92.8 MB
ENCFF890QTC.bigWig bigWig (minus strand signal of all reads) 97.4 MB
ENCFF890RAG.bigWig bigWig (minus strand signal of unique reads) 88.3 MB
ENCFF894LUW.bigWig bigWig (minus strand signal of unique reads) 87.6 MB
ENCFF907AAZ.bigWig bigWig (minus strand signal of all reads) 99.5 MB
ENCFF914KON.tsv tsv (gene quantifications) 10.4 MB
ENCFF923GNV.bigWig bigWig (minus strand signal of all reads) 99.2 MB
ENCFF940LCD.bigWig bigWig (plus strand signal of unique reads) 92.4 MB
ENCFF944GSW.bigWig bigWig (plus strand signal of unique reads) 90.1 MB
ENCFF952BHJ.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF953BFR.bigWig bigWig (plus strand signal of all reads) 90.5 MB
ENCFF956BLU.tsv tsv (gene quantifications) 9.1 MB
ENCFF958LNK.bigWig bigWig (minus strand signal of unique reads) 95.1 MB
ENCFF971SLA.tsv tsv (differential expression quantifications) 2.0 MB
ENCFF986UJZ.tsv tsv (transcript quantifications) 25.3 MB
ENCFF988XJC.tsv tsv (transcript quantifications) 25.3 MB
ENCFF991ZNG.bam bam (alignments) 3.2 GB
ENCFF997NRQ.bigWig bigWig (plus strand signal of unique reads) 98.1 MB
ENCFF998ZYT.bigWig bigWig (plus strand signal of unique reads) 97.5 MB
ENCSR782MXN ENCSR · via encode_api

RNA-seq on HepG2 cells treated with an shRNA knockdown against SFPQ. (SFPQ_BGHLV26)

Homo sapiens

92 data files
FileTypeSize
ENCFF016RZN.bigWig bigWig (minus strand signal of unique reads) 70.9 MB
ENCFF019UKH.bigWig bigWig (minus strand signal of all reads) 71.9 MB
ENCFF030GXP.tsv tsv (transcript quantifications) 25.0 MB
ENCFF034WLU.tsv tsv (transcript quantifications) 27.3 MB
ENCFF036CIQ.bam bam (alignments) 3.7 GB
ENCFF038QGZ.bigWig bigWig (plus strand signal of unique reads) 72.0 MB
ENCFF045VON.fastq fastq (reads) 2.8 GB
ENCFF058EMO.bigWig bigWig (plus strand signal of unique reads) 66.7 MB
ENCFF065ZAL.bigWig bigWig (plus strand signal of unique reads) 72.5 MB
ENCFF082DRM.bigWig bigWig (plus strand signal of unique reads) 72.0 MB
ENCFF082GJO.tsv tsv (differential expression quantifications) 5.5 MB
ENCFF091BXG.bigWig bigWig (minus strand signal of unique reads) 70.3 MB
ENCFF094KRM.tar tar (differential splicing quantifications) 3.5 MB
ENCFF103ZRK.bigWig bigWig (minus strand signal of all reads) 68.1 MB
ENCFF112OJT.tsv tsv (transcript quantifications) 25.4 MB
ENCFF129OGO.bigWig bigWig (plus strand signal of all reads) 73.0 MB
ENCFF135KXD.bigWig bigWig (minus strand signal of unique reads) 69.8 MB
ENCFF153PUW.bam bam (alignments) 3.9 GB
ENCFF172GCK.bigWig bigWig (minus strand signal of all reads) 78.4 MB
ENCFF185OZU.tsv tsv (differential expression quantifications) 4.2 MB
ENCFF206FHL.bigWig bigWig (minus strand signal of all reads) 68.6 MB
ENCFF213HCX.bam bam (alignments) 4.9 GB
ENCFF215NJU.bigWig bigWig (plus strand signal of unique reads) 67.8 MB
ENCFF259ZFG.bam bam (alignments) 4.6 GB
ENCFF268JNU.tsv tsv (gene quantifications) 9.5 MB
ENCFF279IYE.tsv tsv (transcript quantifications) 27.3 MB
ENCFF288JMM.bam bam (alignments) 4.0 GB
ENCFF298HGB.tsv tsv (differential expression quantifications) 1.8 MB
ENCFF306GWI.bigWig bigWig (plus strand signal of all reads) 80.7 MB
ENCFF318WPG.bigWig bigWig (plus strand signal of all reads) 70.3 MB
ENCFF324AVO.bigWig bigWig (minus strand signal of unique reads) 64.8 MB
ENCFF327WBC.tsv tsv (gene quantifications) 9.5 MB
ENCFF333XTR.bigWig bigWig (plus strand signal of all reads) 80.7 MB
ENCFF344ZPF.tsv tsv (transcript quantifications) 25.0 MB
ENCFF390YPJ.bigWig bigWig (minus strand signal of all reads) 70.3 MB
ENCFF391VOJ.bam bam (alignments) 3.8 GB
ENCFF402HCN.bam bam (alignments) 4.5 GB
ENCFF419WQB.bigWig bigWig (plus strand signal of all reads) 80.2 MB
ENCFF422YLM.tar tar (differential splicing quantifications) 2.9 MB
ENCFF424AEM.bigWig bigWig (plus strand signal of all reads) 73.7 MB
ENCFF426SEB.bigWig bigWig (plus strand signal of all reads) 72.2 MB
ENCFF442QML.bigWig bigWig (plus strand signal of unique reads) 72.5 MB
ENCFF451KCG.bigWig bigWig (minus strand signal of all reads) 77.4 MB
ENCFF474BUK.bam bam (alignments) 3.7 GB
ENCFF494QJC.bigWig bigWig (plus strand signal of unique reads) 71.7 MB
ENCFF508JJW.bigWig bigWig (minus strand signal of all reads) 79.0 MB
ENCFF534ATB.tsv tsv (transcript quantifications) 29.9 MB
ENCFF537PNI.tsv tsv (gene quantifications) 9.1 MB
ENCFF549JHX.bigWig bigWig (minus strand signal of all reads) 71.2 MB
ENCFF554JDI.bam bam (transcriptome alignments) 6.0 GB
ENCFF587WVP.tsv tsv (gene quantifications) 9.1 MB
ENCFF595HGP.fastq fastq (reads) 2.8 GB
ENCFF611BJW.bam bam (alignments) 4.7 GB
ENCFF614RNI.tsv tsv (transcript quantifications) 25.4 MB
ENCFF625YEC.bam bam (alignments) 3.9 GB
ENCFF636VDC.tar tar (differential splicing quantifications) 14.7 MB
ENCFF645QXF.bigWig bigWig (plus strand signal of unique reads) 67.5 MB
ENCFF653JAF.bigWig bigWig (minus strand signal of all reads) 79.0 MB
ENCFF659VSO.bigWig bigWig (minus strand signal of unique reads) 65.7 MB
ENCFF671WRK.bigWig bigWig (minus strand signal of unique reads) 70.2 MB
ENCFF674HVZ.bam bam (transcriptome alignments) 6.0 GB
ENCFF683XVL.bigWig bigWig (minus strand signal of all reads) 70.6 MB
ENCFF713QLK.fastq fastq (reads) 2.8 GB
ENCFF747WMG.bigWig bigWig (minus strand signal of unique reads) 62.7 MB
ENCFF752MME.bigWig bigWig (plus strand signal of unique reads) 73.2 MB
ENCFF778AZZ.bam bam (alignments) 4.6 GB
ENCFF793EFN.bigWig bigWig (minus strand signal of all reads) 79.2 MB
ENCFF798ERV.bam bam (transcriptome alignments) 6.9 GB
ENCFF818VYG.bigWig bigWig (minus strand signal of unique reads) 69.6 MB
ENCFF829NEJ.bigWig bigWig (minus strand signal of unique reads) 66.8 MB
ENCFF837GPQ.bigWig bigWig (minus strand signal of unique reads) 65.5 MB
ENCFF838YLY.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF853MTS.bigWig bigWig (plus strand signal of all reads) 71.9 MB
ENCFF856HPI.bigWig bigWig (plus strand signal of all reads) 80.7 MB
ENCFF857LTR.fastq fastq (reads) 2.7 GB
ENCFF864ALO.bigWig bigWig (plus strand signal of all reads) 80.2 MB
ENCFF870TCC.bigWig bigWig (minus strand signal of unique reads) 63.6 MB
ENCFF876KFI.bigWig bigWig (plus strand signal of unique reads) 65.6 MB
ENCFF896DRN.bigWig bigWig (plus strand signal of all reads) 69.7 MB
ENCFF902MUZ.tsv tsv (gene quantifications) 10.4 MB
ENCFF911NMN.bam bam (transcriptome alignments) 6.1 GB
ENCFF929MZT.tsv tsv (transcript quantifications) 29.9 MB
ENCFF934JAN.bigWig bigWig (plus strand signal of unique reads) 64.7 MB
ENCFF938CVB.bigWig bigWig (plus strand signal of unique reads) 69.0 MB
ENCFF939FRD.bam bam (transcriptome alignments) 6.0 GB
ENCFF955ENZ.bam bam (transcriptome alignments) 6.9 GB
ENCFF967LUG.bigWig bigWig (plus strand signal of all reads) 78.9 MB
ENCFF972GMD.bigWig bigWig (minus strand signal of all reads) 78.4 MB
ENCFF974PYS.bam bam (alignments) 4.9 GB
ENCFF993JYF.tsv tsv (gene quantifications) 10.4 MB
ENCFF994XJQ.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF995XFA.bigWig bigWig (minus strand signal of unique reads) 69.8 MB
ENCSR126ARZ ENCSR · via encode_api

RNA-seq on K562 cells treated with an shRNA knockdown against ILF2. (ILF2_BGKLV24_B)

Homo sapiens

92 data files
FileTypeSize
ENCFF004JEI.bigWig bigWig (plus strand signal of unique reads) 95.8 MB
ENCFF009BTF.bam bam (alignments) 5.4 GB
ENCFF020HUV.tsv tsv (gene quantifications) 10.4 MB
ENCFF044ZKD.bigWig bigWig (plus strand signal of all reads) 113.0 MB
ENCFF048YFN.bigWig bigWig (plus strand signal of unique reads) 94.9 MB
ENCFF054ZUA.tar tar (differential splicing quantifications) 4.7 MB
ENCFF057DDF.bam bam (transcriptome alignments) 8.1 GB
ENCFF063VRT.bigWig bigWig (plus strand signal of unique reads) 87.8 MB
ENCFF075SCN.tar tar (differential splicing quantifications) 3.8 MB
ENCFF075YNF.tsv tsv (transcript quantifications) 29.9 MB
ENCFF080FRV.bigWig bigWig (minus strand signal of all reads) 111.6 MB
ENCFF083TXG.bigWig bigWig (plus strand signal of unique reads) 82.6 MB
ENCFF110SZH.tsv tsv (transcript quantifications) 25.0 MB
ENCFF127KFP.bigWig bigWig (plus strand signal of unique reads) 100.2 MB
ENCFF134MCB.tsv tsv (gene quantifications) 9.1 MB
ENCFF180DBV.bam bam (alignments) 6.1 GB
ENCFF180FON.bigWig bigWig (plus strand signal of all reads) 108.2 MB
ENCFF190WFC.fastq fastq (reads) 3.6 GB
ENCFF213PHY.bam bam (alignments) 5.5 GB
ENCFF221SDX.bigWig bigWig (minus strand signal of unique reads) 97.1 MB
ENCFF228GMV.bigWig bigWig (plus strand signal of all reads) 97.5 MB
ENCFF241HTC.bam bam (alignments) 7.5 GB
ENCFF247ACU.bigWig bigWig (minus strand signal of unique reads) 93.1 MB
ENCFF256IZH.bigWig bigWig (minus strand signal of all reads) 89.7 MB
ENCFF257FGH.tsv tsv (transcript quantifications) 27.4 MB
ENCFF258UBA.bigWig bigWig (plus strand signal of all reads) 107.1 MB
ENCFF279HWA.bam bam (transcriptome alignments) 8.1 GB
ENCFF312UXZ.bam bam (alignments) 6.7 GB
ENCFF316FXT.bigWig bigWig (minus strand signal of unique reads) 80.6 MB
ENCFF320GDS.bigWig bigWig (minus strand signal of unique reads) 98.0 MB
ENCFF321FBM.bigWig bigWig (plus strand signal of unique reads) 100.6 MB
ENCFF325MKU.bam bam (transcriptome alignments) 7.2 GB
ENCFF335PIE.bigWig bigWig (plus strand signal of all reads) 108.2 MB
ENCFF341KXI.bigWig bigWig (minus strand signal of unique reads) 94.0 MB
ENCFF347RYW.bigWig bigWig (plus strand signal of all reads) 114.4 MB
ENCFF379OMY.bigWig bigWig (minus strand signal of unique reads) 98.4 MB
ENCFF414TER.bam bam (alignments) 6.1 GB
ENCFF418GMY.bigWig bigWig (plus strand signal of all reads) 100.7 MB
ENCFF423KRK.bam bam (alignments) 7.3 GB
ENCFF427HSK.tar tar (differential splicing quantifications) 16.1 MB
ENCFF432NBJ.bigWig bigWig (minus strand signal of all reads) 113.2 MB
ENCFF442SYV.bigWig bigWig (minus strand signal of all reads) 93.8 MB
ENCFF448TYJ.tsv tsv (transcript quantifications) 29.9 MB
ENCFF456DDK.bigWig bigWig (plus strand signal of unique reads) 95.8 MB
ENCFF466EVT.bam bam (alignments) 7.5 GB
ENCFF471CQW.bigWig bigWig (plus strand signal of all reads) 94.9 MB
ENCFF486NZK.bigWig bigWig (plus strand signal of unique reads) 99.5 MB
ENCFF501EWO.fastq fastq (reads) 4.1 GB
ENCFF519MGH.tsv tsv (differential expression quantifications) 2.8 MB
ENCFF526CGB.tsv tsv (gene quantifications) 10.4 MB
ENCFF529UIN.bam bam (alignments) 6.1 GB
ENCFF541SRH.bam bam (alignments) 6.5 GB
ENCFF549XYO.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF550EOK.tsv tsv (gene quantifications) 9.1 MB
ENCFF570XOF.bigWig bigWig (plus strand signal of unique reads) 92.8 MB
ENCFF575RIN.bigWig bigWig (minus strand signal of all reads) 98.9 MB
ENCFF580GZU.bam bam (alignments) 5.5 GB
ENCFF588RXP.bam bam (alignments) 6.7 GB
ENCFF593NUA.bigWig bigWig (minus strand signal of all reads) 94.2 MB
ENCFF599MTL.bigWig bigWig (plus strand signal of unique reads) 93.4 MB
ENCFF631NOV.tsv tsv (transcript quantifications) 25.0 MB
ENCFF631YQZ.bigWig bigWig (minus strand signal of unique reads) 90.9 MB
ENCFF641PXX.bigWig bigWig (plus strand signal of all reads) 91.1 MB
ENCFF649CVA.fastq fastq (reads) 4.1 GB
ENCFF652FPO.tsv tsv (transcript quantifications) 27.4 MB
ENCFF656XIE.bam bam (transcriptome alignments) 8.2 GB
ENCFF664NEE.bigWig bigWig (minus strand signal of unique reads) 85.8 MB
ENCFF675TQJ.bigWig bigWig (minus strand signal of unique reads) 93.7 MB
ENCFF677LNM.bigWig bigWig (plus strand signal of all reads) 114.4 MB
ENCFF677NSL.tsv tsv (differential expression quantifications) 4.3 MB
ENCFF678BIK.bigWig bigWig (minus strand signal of all reads) 106.0 MB
ENCFF705YJF.bigWig bigWig (minus strand signal of all reads) 113.2 MB
ENCFF742WNX.tsv tsv (gene quantifications) 9.5 MB
ENCFF772LVN.bigWig bigWig (minus strand signal of unique reads) 91.1 MB
ENCFF774CGX.tsv tsv (transcript quantifications) 25.4 MB
ENCFF774NJZ.bigWig bigWig (minus strand signal of unique reads) 87.3 MB
ENCFF774ZKN.bigWig bigWig (minus strand signal of unique reads) 85.7 MB
ENCFF778AZM.tsv tsv (transcript quantifications) 25.4 MB
ENCFF796FKM.bigWig bigWig (minus strand signal of all reads) 95.7 MB
ENCFF816QJL.tsv tsv (gene quantifications) 9.5 MB
ENCFF835ISZ.bigWig bigWig (plus strand signal of all reads) 98.2 MB
ENCFF837GPH.bigWig bigWig (minus strand signal of all reads) 107.2 MB
ENCFF860XRZ.bigWig bigWig (plus strand signal of unique reads) 89.6 MB
ENCFF865IMR.bam bam (transcriptome alignments) 7.2 GB
ENCFF869ZRE.tsv tsv (differential expression quantifications) 2.0 MB
ENCFF895MKQ.bigWig bigWig (plus strand signal of unique reads) 87.4 MB
ENCFF910XRA.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF929WOW.bigWig bigWig (minus strand signal of all reads) 97.0 MB
ENCFF931IJQ.bam bam (transcriptome alignments) 9.2 GB
ENCFF955GFZ.bigWig bigWig (plus strand signal of all reads) 95.6 MB
ENCFF958QIG.fastq fastq (reads) 3.6 GB
ENCFF976JAK.bigWig bigWig (minus strand signal of all reads) 107.2 MB
ENCSR023HWI ENCSR · via encode_api

RNA-seq on K562 cells treated with an shRNA knockdown against KHDRBS1. (KHDRBS1_BGKLV24)

Homo sapiens

92 data files
FileTypeSize
ENCFF007AYD.fastq fastq (reads) 1.4 GB
ENCFF029CTT.bigWig bigWig (plus strand signal of unique reads) 58.6 MB
ENCFF042ICJ.bam bam (alignments) 2.3 GB
ENCFF042LYN.bigWig bigWig (plus strand signal of all reads) 66.7 MB
ENCFF059QNZ.tsv tsv (differential expression quantifications) 1.8 MB
ENCFF063SQW.bigWig bigWig (minus strand signal of all reads) 65.7 MB
ENCFF079OXC.bigWig bigWig (plus strand signal of unique reads) 52.5 MB
ENCFF094QGR.bigWig bigWig (plus strand signal of all reads) 72.6 MB
ENCFF101WQK.bigWig bigWig (minus strand signal of all reads) 65.6 MB
ENCFF123QMS.tsv tsv (gene quantifications) 9.4 MB
ENCFF126AIW.tsv tsv (transcript quantifications) 27.2 MB
ENCFF136RXR.bigWig bigWig (minus strand signal of all reads) 71.6 MB
ENCFF144NYB.bigWig bigWig (minus strand signal of unique reads) 59.8 MB
ENCFF145HFN.bam bam (alignments) 2.5 GB
ENCFF152TWY.bigWig bigWig (plus strand signal of all reads) 65.4 MB
ENCFF154SZS.bam bam (alignments) 2.3 GB
ENCFF178KKQ.bigWig bigWig (minus strand signal of all reads) 65.8 MB
ENCFF195TCY.bigWig bigWig (plus strand signal of unique reads) 65.6 MB
ENCFF205UNW.bigWig bigWig (minus strand signal of all reads) 71.8 MB
ENCFF211XVR.tar tar (differential splicing quantifications) 3.1 MB
ENCFF215CJR.tsv tsv (differential expression quantifications) 4.1 MB
ENCFF235GYE.bam bam (alignments) 3.0 GB
ENCFF244PSF.bigWig bigWig (minus strand signal of all reads) 61.7 MB
ENCFF248PRQ.bigWig bigWig (plus strand signal of unique reads) 55.4 MB
ENCFF273RUL.fastq fastq (reads) 1.7 GB
ENCFF313RWH.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF329DGJ.bam bam (transcriptome alignments) 3.1 GB
ENCFF337HWS.bigWig bigWig (plus strand signal of all reads) 56.1 MB
ENCFF337QRX.bigWig bigWig (minus strand signal of all reads) 55.0 MB
ENCFF345BTY.bigWig bigWig (plus strand signal of all reads) 62.8 MB
ENCFF347XQK.bigWig bigWig (plus strand signal of all reads) 60.2 MB
ENCFF348BFD.bam bam (transcriptome alignments) 3.5 GB
ENCFF355ACV.bam bam (alignments) 2.5 GB
ENCFF357TEC.bigWig bigWig (minus strand signal of all reads) 71.6 MB
ENCFF360LCP.fastq fastq (reads) 1.5 GB
ENCFF370QXC.tsv tsv (transcript quantifications) 27.3 MB
ENCFF403CHJ.bigWig bigWig (plus strand signal of unique reads) 58.6 MB
ENCFF414ANM.bam bam (alignments) 2.7 GB
ENCFF422BGC.bigWig bigWig (plus strand signal of unique reads) 61.1 MB
ENCFF431DXV.bam bam (transcriptome alignments) 3.1 GB
ENCFF443WSJ.tsv tsv (gene quantifications) 10.4 MB
ENCFF444TSQ.tsv tsv (transcript quantifications) 29.7 MB
ENCFF445XYF.bigWig bigWig (minus strand signal of unique reads) 64.0 MB
ENCFF449SWE.bigWig bigWig (plus strand signal of all reads) 65.4 MB
ENCFF463IGP.fastq fastq (reads) 1.5 GB
ENCFF467JQK.tsv tsv (transcript quantifications) 25.3 MB
ENCFF469REN.bigWig bigWig (minus strand signal of unique reads) 51.1 MB
ENCFF507BEO.bigWig bigWig (plus strand signal of all reads) 64.9 MB
ENCFF513PKE.tsv tsv (gene quantifications) 9.4 MB
ENCFF521XZJ.tsv tsv (gene quantifications) 10.4 MB
ENCFF524HQE.tsv tsv (transcript quantifications) 29.8 MB
ENCFF539HXW.tsv tsv (transcript quantifications) 24.8 MB
ENCFF544NKU.bigWig bigWig (minus strand signal of unique reads) 63.5 MB
ENCFF559IMK.bigWig bigWig (plus strand signal of unique reads) 65.6 MB
ENCFF571HCE.bam bam (alignments) 3.0 GB
ENCFF573KPK.tsv tsv (gene quantifications) 9.1 MB
ENCFF600NIN.bigWig bigWig (plus strand signal of all reads) 72.6 MB
ENCFF602SCB.bigWig bigWig (plus strand signal of all reads) 65.7 MB
ENCFF613CZH.bigWig bigWig (minus strand signal of all reads) 65.3 MB
ENCFF638TKA.bam bam (alignments) 2.7 GB
ENCFF656QEN.bam bam (alignments) 2.5 GB
ENCFF677BNH.bigWig bigWig (plus strand signal of unique reads) 54.5 MB
ENCFF690WNM.tar tar (differential splicing quantifications) 12.5 MB
ENCFF695HBS.bigWig bigWig (plus strand signal of unique reads) 58.3 MB
ENCFF703FOH.bam bam (alignments) 2.9 GB
ENCFF706REA.bigWig bigWig (plus strand signal of unique reads) 58.2 MB
ENCFF730DLV.bam bam (alignments) 2.7 GB
ENCFF737BBV.bigWig bigWig (minus strand signal of unique reads) 54.0 MB
ENCFF738API.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF738SSD.bam bam (alignments) 2.3 GB
ENCFF740OSV.bam bam (transcriptome alignments) 3.8 GB
ENCFF743IUA.bigWig bigWig (minus strand signal of unique reads) 60.0 MB
ENCFF754FMW.bigWig bigWig (plus strand signal of unique reads) 61.6 MB
ENCFF756FLN.bigWig bigWig (minus strand signal of unique reads) 56.8 MB
ENCFF784YKD.bigWig bigWig (minus strand signal of unique reads) 57.2 MB
ENCFF788PMZ.bigWig bigWig (plus strand signal of all reads) 59.0 MB
ENCFF788ZYK.bam bam (transcriptome alignments) 3.4 GB
ENCFF849YNA.tsv tsv (transcript quantifications) 24.8 MB
ENCFF859MSZ.bam bam (transcriptome alignments) 3.3 GB
ENCFF859PBW.tsv tsv (transcript quantifications) 25.3 MB
ENCFF861QYV.bigWig bigWig (plus strand signal of unique reads) 65.0 MB
ENCFF870IID.tsv tsv (gene quantifications) 9.1 MB
ENCFF873ARR.tsv tsv (differential expression quantifications) 2.6 MB
ENCFF880YKY.bigWig bigWig (minus strand signal of all reads) 59.2 MB
ENCFF888ITN.bigWig bigWig (minus strand signal of unique reads) 57.1 MB
ENCFF907NFY.bigWig bigWig (minus strand signal of unique reads) 56.6 MB
ENCFF916CHF.bigWig bigWig (minus strand signal of unique reads) 53.4 MB
ENCFF946VJB.bigWig bigWig (minus strand signal of all reads) 59.4 MB
ENCFF949MIN.bigWig bigWig (plus strand signal of all reads) 72.7 MB
ENCFF970XIF.tar tar (differential splicing quantifications) 2.9 MB
ENCFF974DUX.bigWig bigWig (minus strand signal of all reads) 64.8 MB
ENCFF984IBH.bigWig bigWig (minus strand signal of unique reads) 63.9 MB
ENCSR398GHW ENCSR · via encode_api

shRNA knockdown against GEMIN5 in K562 cells followed by RNA-seq. (GEMIN5_BGKLV19)

Homo sapiens

92 data files
FileTypeSize
ENCFF004PZT.bigWig bigWig (minus strand signal of all reads) 83.8 MB
ENCFF042ITP.bigWig bigWig (minus strand signal of unique reads) 81.6 MB
ENCFF045TFX.tsv tsv (transcript quantifications) 27.4 MB
ENCFF046VHD.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF057KCO.bigWig bigWig (plus strand signal of all reads) 91.8 MB
ENCFF060AVK.fastq fastq (reads) 2.1 GB
ENCFF062RIL.bam bam (alignments) 3.7 GB
ENCFF063FSA.bigWig bigWig (plus strand signal of unique reads) 84.0 MB
ENCFF087NBU.bigWig bigWig (plus strand signal of all reads) 92.7 MB
ENCFF091KVK.tsv tsv (transcript quantifications) 25.3 MB
ENCFF126SDN.tsv tsv (gene quantifications) 9.1 MB
ENCFF131QZM.tsv tsv (transcript quantifications) 29.8 MB
ENCFF138VDJ.bigWig bigWig (plus strand signal of all reads) 84.8 MB
ENCFF155OZV.bigWig bigWig (minus strand signal of all reads) 93.8 MB
ENCFF156VSL.tsv tsv (transcript quantifications) 29.8 MB
ENCFF158RNM.bigWig bigWig (minus strand signal of unique reads) 79.2 MB
ENCFF161TNH.bam bam (alignments) 3.3 GB
ENCFF169NEF.bigWig bigWig (minus strand signal of all reads) 80.6 MB
ENCFF195DMC.bigWig bigWig (minus strand signal of unique reads) 79.3 MB
ENCFF227CAJ.fastq fastq (reads) 2.4 GB
ENCFF236DRN.bigWig bigWig (plus strand signal of all reads) 78.3 MB
ENCFF247CLK.bam bam (alignments) 4.1 GB
ENCFF260GWM.tsv tsv (gene quantifications) 9.4 MB
ENCFF268ZHL.tsv tsv (transcript quantifications) 27.4 MB
ENCFF273DJY.bigWig bigWig (minus strand signal of unique reads) 81.7 MB
ENCFF276KPZ.bam bam (transcriptome alignments) 4.5 GB
ENCFF325GNH.bigWig bigWig (plus strand signal of unique reads) 78.9 MB
ENCFF332DXM.bigWig bigWig (plus strand signal of unique reads) 77.8 MB
ENCFF335XHJ.bigWig bigWig (plus strand signal of unique reads) 83.6 MB
ENCFF343FQP.tsv tsv (differential expression quantifications) 4.2 MB
ENCFF381TQI.bam bam (alignments) 3.6 GB
ENCFF382ENZ.bam bam (alignments) 4.4 GB
ENCFF382HWL.bigWig bigWig (minus strand signal of unique reads) 77.0 MB
ENCFF385CGF.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF389ZNC.bigWig bigWig (minus strand signal of all reads) 88.4 MB
ENCFF393RZN.bam bam (transcriptome alignments) 5.6 GB
ENCFF400STC.bigWig bigWig (plus strand signal of all reads) 94.9 MB
ENCFF440ATH.bigWig bigWig (plus strand signal of all reads) 89.7 MB
ENCFF464EZU.bigWig bigWig (minus strand signal of all reads) 93.7 MB
ENCFF477JRF.bigWig bigWig (minus strand signal of unique reads) 82.1 MB
ENCFF486ULY.bigWig bigWig (plus strand signal of unique reads) 77.0 MB
ENCFF497ZHR.tsv tsv (transcript quantifications) 24.8 MB
ENCFF506AVS.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF521DET.bam bam (alignments) 3.4 GB
ENCFF531WRY.bam bam (transcriptome alignments) 4.9 GB
ENCFF533TFQ.bigWig bigWig (plus strand signal of all reads) 91.8 MB
ENCFF536ABX.bigWig bigWig (plus strand signal of all reads) 81.7 MB
ENCFF536AQR.bam bam (alignments) 4.1 GB
ENCFF537ADH.tar tar (differential splicing quantifications) 14.7 MB
ENCFF567HSI.bigWig bigWig (plus strand signal of unique reads) 83.6 MB
ENCFF585PEW.bigWig bigWig (minus strand signal of unique reads) 77.2 MB
ENCFF586EXN.bigWig bigWig (plus strand signal of unique reads) 72.0 MB
ENCFF588PVP.bigWig bigWig (plus strand signal of unique reads) 81.1 MB
ENCFF603GSA.tsv tsv (gene quantifications) 10.4 MB
ENCFF619WAO.bam bam (transcriptome alignments) 4.5 GB
ENCFF620MZG.bam bam (alignments) 3.6 GB
ENCFF633KQS.bam bam (alignments) 4.3 GB
ENCFF634GSW.bigWig bigWig (minus strand signal of unique reads) 75.3 MB
ENCFF644DFY.bigWig bigWig (plus strand signal of all reads) 86.8 MB
ENCFF653ISV.fastq fastq (reads) 2.2 GB
ENCFF657KIL.bigWig bigWig (plus strand signal of unique reads) 81.2 MB
ENCFF664ACV.bigWig bigWig (plus strand signal of unique reads) 79.0 MB
ENCFF689VMB.bigWig bigWig (plus strand signal of unique reads) 81.7 MB
ENCFF698HWQ.bigWig bigWig (minus strand signal of all reads) 85.4 MB
ENCFF709HXE.bam bam (transcriptome alignments) 5.1 GB
ENCFF717ROU.tar tar (differential splicing quantifications) 4.0 MB
ENCFF731UBI.bam bam (alignments) 4.4 GB
ENCFF748MHF.tsv tsv (gene quantifications) 9.4 MB
ENCFF753KXL.bigWig bigWig (minus strand signal of all reads) 80.6 MB
ENCFF761EWX.bam bam (transcriptome alignments) 5.0 GB
ENCFF770ZZD.bigWig bigWig (plus strand signal of all reads) 82.0 MB
ENCFF775FQD.bigWig bigWig (plus strand signal of unique reads) 76.0 MB
ENCFF785SEM.bigWig bigWig (plus strand signal of all reads) 83.5 MB
ENCFF795UCN.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF802TIL.bigWig bigWig (minus strand signal of all reads) 90.6 MB
ENCFF807TRO.bigWig bigWig (minus strand signal of unique reads) 69.9 MB
ENCFF808KJH.bam bam (alignments) 3.4 GB
ENCFF813RRD.tsv tsv (gene quantifications) 10.4 MB
ENCFF855VIC.tar tar (differential splicing quantifications) 3.5 MB
ENCFF863WWX.bigWig bigWig (minus strand signal of all reads) 76.8 MB
ENCFF874JEE.bigWig bigWig (minus strand signal of unique reads) 79.6 MB
ENCFF883YXJ.bigWig bigWig (minus strand signal of unique reads) 75.8 MB
ENCFF897AEO.bigWig bigWig (minus strand signal of all reads) 90.6 MB
ENCFF909QSA.bigWig bigWig (minus strand signal of all reads) 91.5 MB
ENCFF912LEC.fastq fastq (reads) 2.2 GB
ENCFF925QCW.bigWig bigWig (plus strand signal of all reads) 94.9 MB
ENCFF934IYG.tsv tsv (transcript quantifications) 25.3 MB
ENCFF946XFO.bam bam (alignments) 4.0 GB
ENCFF950WIM.tsv tsv (transcript quantifications) 24.8 MB
ENCFF976CVM.tsv tsv (gene quantifications) 9.1 MB
ENCFF986CPE.bigWig bigWig (minus strand signal of unique reads) 73.9 MB
ENCFF998GWB.bigWig bigWig (minus strand signal of all reads) 82.0 MB
ENCSR794NUE ENCSR · via encode_api

RNA-seq on K562 cells treated with an shRNA knockdown against HNRNPA2B1. (HNRNPA2B1_BGKLV28)

Homo sapiens

92 data files
FileTypeSize
ENCFF010CPJ.bigWig bigWig (minus strand signal of all reads) 97.9 MB
ENCFF014KCH.bam bam (alignments) 6.2 GB
ENCFF032AAU.tsv tsv (gene quantifications) 10.4 MB
ENCFF048JOF.bigWig bigWig (minus strand signal of all reads) 95.1 MB
ENCFF053MAX.tsv tsv (gene quantifications) 10.4 MB
ENCFF054RBZ.bam bam (alignments) 6.4 GB
ENCFF064QQG.tsv tsv (differential expression quantifications) 4.3 MB
ENCFF066SDW.bigWig bigWig (plus strand signal of unique reads) 87.6 MB
ENCFF075RMD.bigWig bigWig (plus strand signal of all reads) 98.2 MB
ENCFF083YAC.bam bam (alignments) 5.8 GB
ENCFF097HRF.tsv tsv (transcript quantifications) 29.9 MB
ENCFF124HNG.bam bam (alignments) 6.2 GB
ENCFF131UDD.bigWig bigWig (minus strand signal of unique reads) 92.8 MB
ENCFF134BJI.bam bam (transcriptome alignments) 8.2 GB
ENCFF143UWI.bigWig bigWig (plus strand signal of all reads) 91.1 MB
ENCFF153MHR.bam bam (alignments) 7.1 GB
ENCFF171GND.tsv tsv (transcript quantifications) 24.9 MB
ENCFF204KYH.bigWig bigWig (minus strand signal of unique reads) 81.2 MB
ENCFF220ZVC.bigWig bigWig (plus strand signal of unique reads) 95.4 MB
ENCFF262AQQ.bigWig bigWig (plus strand signal of unique reads) 88.8 MB
ENCFF277MRB.bam bam (alignments) 7.5 GB
ENCFF280ZKM.fastq fastq (reads) 3.8 GB
ENCFF287XHH.bigWig bigWig (plus strand signal of unique reads) 83.9 MB
ENCFF288CSI.tsv tsv (transcript quantifications) 27.5 MB
ENCFF300WWT.bam bam (transcriptome alignments) 7.6 GB
ENCFF302LTG.bigWig bigWig (plus strand signal of all reads) 95.0 MB
ENCFF307OOY.bigWig bigWig (minus strand signal of unique reads) 85.0 MB
ENCFF312KPQ.tsv tsv (transcript quantifications) 25.4 MB
ENCFF358VMZ.fastq fastq (reads) 4.1 GB
ENCFF387CGL.bigWig bigWig (plus strand signal of all reads) 106.9 MB
ENCFF406FQU.tar tar (differential splicing quantifications) 4.0 MB
ENCFF411WFI.bigWig bigWig (minus strand signal of all reads) 96.3 MB
ENCFF415PLG.bigWig bigWig (minus strand signal of unique reads) 86.0 MB
ENCFF416DHW.tsv tsv (transcript quantifications) 29.9 MB
ENCFF432MAC.bigWig bigWig (plus strand signal of all reads) 111.1 MB
ENCFF434OPH.bigWig bigWig (minus strand signal of unique reads) 97.5 MB
ENCFF440VZG.tsv tsv (differential expression quantifications) 1.6 MB
ENCFF441ZIR.bigWig bigWig (minus strand signal of unique reads) 98.3 MB
ENCFF443YQA.bigWig bigWig (plus strand signal of all reads) 112.5 MB
ENCFF451AVS.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF462BZZ.bam bam (alignments) 7.7 GB
ENCFF465OIZ.tsv tsv (gene quantifications) 9.5 MB
ENCFF481YHY.bigWig bigWig (minus strand signal of unique reads) 98.3 MB
ENCFF483WUV.bigWig bigWig (minus strand signal of unique reads) 88.0 MB
ENCFF489WJK.bigWig bigWig (plus strand signal of unique reads) 94.9 MB
ENCFF498DCY.bigWig bigWig (plus strand signal of unique reads) 93.2 MB
ENCFF517GME.bigWig bigWig (minus strand signal of all reads) 109.1 MB
ENCFF525JZG.bigWig bigWig (plus strand signal of unique reads) 101.0 MB
ENCFF529HBQ.tar tar (differential splicing quantifications) 15.9 MB
ENCFF569VES.bigWig bigWig (plus strand signal of all reads) 112.5 MB
ENCFF596WSN.bam bam (alignments) 5.8 GB
ENCFF597QJV.bigWig bigWig (minus strand signal of all reads) 90.5 MB
ENCFF598WLE.bigWig bigWig (minus strand signal of all reads) 88.8 MB
ENCFF600KMB.fastq fastq (reads) 3.8 GB
ENCFF633KFU.bam bam (alignments) 7.1 GB
ENCFF649AAX.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF651PBA.bam bam (transcriptome alignments) 9.2 GB
ENCFF662EOG.bigWig bigWig (plus strand signal of unique reads) 101.1 MB
ENCFF664UFG.bam bam (alignments) 7.7 GB
ENCFF673COV.bigWig bigWig (plus strand signal of unique reads) 100.4 MB
ENCFF704VJC.tsv tsv (gene quantifications) 9.1 MB
ENCFF711JVY.bam bam (transcriptome alignments) 8.6 GB
ENCFF712NRF.bam bam (transcriptome alignments) 7.6 GB
ENCFF715BTA.bam bam (alignments) 6.9 GB
ENCFF738CEL.bigWig bigWig (plus strand signal of all reads) 92.2 MB
ENCFF744EQS.bam bam (transcriptome alignments) 8.1 GB
ENCFF749XCZ.fastq fastq (reads) 4.1 GB
ENCFF750ZXA.bigWig bigWig (minus strand signal of unique reads) 92.8 MB
ENCFF752ZRF.tsv tsv (gene quantifications) 9.1 MB
ENCFF756LQE.bigWig bigWig (minus strand signal of unique reads) 90.4 MB
ENCFF757IXP.bigWig bigWig (plus strand signal of all reads) 106.9 MB
ENCFF761LQB.tsv tsv (transcript quantifications) 25.4 MB
ENCFF781XWY.bigWig bigWig (plus strand signal of all reads) 97.3 MB
ENCFF801UPV.bigWig bigWig (minus strand signal of all reads) 102.7 MB
ENCFF805VBA.bigWig bigWig (minus strand signal of all reads) 110.5 MB
ENCFF807XMR.bigWig bigWig (plus strand signal of unique reads) 95.4 MB
ENCFF816TBO.bigWig bigWig (plus strand signal of unique reads) 90.3 MB
ENCFF843HTU.tsv tsv (differential expression quantifications) 5.7 MB
ENCFF849LQK.tsv tsv (gene quantifications) 9.5 MB
ENCFF865RRD.tsv tsv (transcript quantifications) 25.0 MB
ENCFF901TZJ.bigWig bigWig (minus strand signal of all reads) 104.9 MB
ENCFF909URB.bigWig bigWig (minus strand signal of all reads) 110.5 MB
ENCFF925DDT.bigWig bigWig (minus strand signal of unique reads) 83.8 MB
ENCFF933DFE.bam bam (alignments) 5.9 GB
ENCFF936YNO.bigWig bigWig (plus strand signal of unique reads) 86.1 MB
ENCFF954CWI.bigWig bigWig (plus strand signal of all reads) 100.1 MB
ENCFF964QGK.tar tar (differential splicing quantifications) 5.2 MB
ENCFF965BJI.bigWig bigWig (minus strand signal of unique reads) 92.0 MB
ENCFF982BMD.bigWig bigWig (plus strand signal of all reads) 104.7 MB
ENCFF984OLR.bigWig bigWig (minus strand signal of all reads) 92.7 MB
ENCFF991LPQ.bigWig bigWig (minus strand signal of all reads) 104.9 MB
ENCFF992GHF.tsv tsv (transcript quantifications) 27.4 MB
ENCSR060KRD ENCSR · via encode_api

RNA-seq on K562 cells treated with an shRNA knockdown against TROVE2. (TROVE2_BGKLV19-B_rpt)

Homo sapiens

92 data files
FileTypeSize
ENCFF003FXP.tsv tsv (differential expression quantifications) 4.3 MB
ENCFF006RIF.bigWig bigWig (minus strand signal of all reads) 85.7 MB
ENCFF020SHY.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF033RKS.tar tar (differential splicing quantifications) 17.4 MB
ENCFF041DDK.bigWig bigWig (minus strand signal of unique reads) 83.9 MB
ENCFF041IEY.tsv tsv (transcript quantifications) 29.9 MB
ENCFF046PAV.bigWig bigWig (plus strand signal of all reads) 122.9 MB
ENCFF048DYW.bigWig bigWig (minus strand signal of all reads) 112.2 MB
ENCFF082SIM.bigWig bigWig (plus strand signal of unique reads) 82.2 MB
ENCFF104TKN.bigWig bigWig (plus strand signal of all reads) 111.3 MB
ENCFF111QIG.bigWig bigWig (plus strand signal of all reads) 96.1 MB
ENCFF118MHK.fastq fastq (reads) 3.8 GB
ENCFF143BBQ.bam bam (alignments) 5.5 GB
ENCFF147ZUG.fastq fastq (reads) 2.6 GB
ENCFF149QZR.bigWig bigWig (plus strand signal of unique reads) 77.8 MB
ENCFF158VAS.bam bam (transcriptome alignments) 7.1 GB
ENCFF169RPE.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF181APT.bam bam (alignments) 6.9 GB
ENCFF181ZSE.bigWig bigWig (plus strand signal of unique reads) 110.9 MB
ENCFF193ZZG.tsv tsv (transcript quantifications) 24.9 MB
ENCFF199PCV.bigWig bigWig (plus strand signal of unique reads) 101.7 MB
ENCFF207IVE.bam bam (alignments) 5.3 GB
ENCFF217PPX.tar tar (differential splicing quantifications) 4.6 MB
ENCFF220XTP.bigWig bigWig (plus strand signal of all reads) 88.3 MB
ENCFF241AGH.bigWig bigWig (minus strand signal of all reads) 122.4 MB
ENCFF258GAU.bigWig bigWig (minus strand signal of unique reads) 79.7 MB
ENCFF258ZFF.fastq fastq (reads) 3.8 GB
ENCFF288KTN.tsv tsv (gene quantifications) 9.5 MB
ENCFF292YMC.tsv tsv (transcript quantifications) 27.4 MB
ENCFF310TVI.fastq fastq (reads) 2.6 GB
ENCFF320XYQ.bigWig bigWig (minus strand signal of unique reads) 80.2 MB
ENCFF339SXC.bigWig bigWig (plus strand signal of unique reads) 86.0 MB
ENCFF340RSS.bigWig bigWig (minus strand signal of all reads) 94.0 MB
ENCFF341QVC.bigWig bigWig (plus strand signal of all reads) 86.7 MB
ENCFF346WTX.tsv tsv (gene quantifications) 9.1 MB
ENCFF349SZD.bigWig bigWig (plus strand signal of unique reads) 110.8 MB
ENCFF353KRT.tsv tsv (gene quantifications) 9.1 MB
ENCFF354ZAD.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF367JGJ.bigWig bigWig (plus strand signal of all reads) 96.0 MB
ENCFF384TJR.tsv tsv (gene quantifications) 10.4 MB
ENCFF391IHX.bam bam (transcriptome alignments) 6.2 GB
ENCFF396ARI.tsv tsv (transcript quantifications) 27.5 MB
ENCFF405TFQ.bam bam (alignments) 5.3 GB
ENCFF411HDS.bigWig bigWig (plus strand signal of all reads) 123.9 MB
ENCFF463QBX.bigWig bigWig (minus strand signal of unique reads) 103.4 MB
ENCFF472THJ.tsv tsv (gene quantifications) 10.4 MB
ENCFF481TRD.bigWig bigWig (minus strand signal of all reads) 94.8 MB
ENCFF498CHQ.bigWig bigWig (minus strand signal of unique reads) 84.1 MB
ENCFF510CIY.bigWig bigWig (plus strand signal of unique reads) 86.0 MB
ENCFF519YKO.bigWig bigWig (minus strand signal of unique reads) 108.5 MB
ENCFF522QWA.bam bam (transcriptome alignments) 9.9 GB
ENCFF542NHR.bam bam (alignments) 3.7 GB
ENCFF545WJJ.bigWig bigWig (minus strand signal of all reads) 94.8 MB
ENCFF547TVB.bigWig bigWig (minus strand signal of all reads) 108.8 MB
ENCFF557GOX.bigWig bigWig (minus strand signal of unique reads) 84.1 MB
ENCFF564QDO.bigWig bigWig (plus strand signal of all reads) 95.3 MB
ENCFF565TRV.bigWig bigWig (minus strand signal of unique reads) 98.9 MB
ENCFF598IIY.tar tar (differential splicing quantifications) 5.6 MB
ENCFF620FQV.bigWig bigWig (minus strand signal of unique reads) 108.2 MB
ENCFF659AIM.bam bam (alignments) 6.5 GB
ENCFF671THA.bigWig bigWig (minus strand signal of all reads) 86.7 MB
ENCFF680PBR.bigWig bigWig (plus strand signal of all reads) 123.9 MB
ENCFF685WQX.bigWig bigWig (minus strand signal of unique reads) 75.6 MB
ENCFF685XLE.tsv tsv (transcript quantifications) 25.3 MB
ENCFF700XJU.bam bam (transcriptome alignments) 6.2 GB
ENCFF708QXL.tsv tsv (transcript quantifications) 29.8 MB
ENCFF709QWU.bigWig bigWig (plus strand signal of unique reads) 106.1 MB
ENCFF712GID.tsv tsv (transcript quantifications) 25.4 MB
ENCFF713GFT.bigWig bigWig (minus strand signal of all reads) 83.7 MB
ENCFF722FHD.bigWig bigWig (plus strand signal of unique reads) 86.0 MB
ENCFF751TUQ.bam bam (alignments) 6.9 GB
ENCFF767ANV.bigWig bigWig (minus strand signal of unique reads) 108.5 MB
ENCFF781ITU.bam bam (transcriptome alignments) 8.7 GB
ENCFF792NWB.bigWig bigWig (plus strand signal of unique reads) 110.9 MB
ENCFF795IAY.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF815QFS.bam bam (transcriptome alignments) 8.6 GB
ENCFF835UGN.bigWig bigWig (minus strand signal of all reads) 122.4 MB
ENCFF857CHR.bam bam (alignments) 4.6 GB
ENCFF879QAN.bigWig bigWig (minus strand signal of all reads) 109.9 MB
ENCFF881UMW.bam bam (alignments) 4.8 GB
ENCFF883FLR.bigWig bigWig (plus strand signal of all reads) 85.4 MB
ENCFF891JDX.bam bam (alignments) 4.8 GB
ENCFF901CLF.bigWig bigWig (minus strand signal of unique reads) 102.8 MB
ENCFF938QMG.bigWig bigWig (minus strand signal of all reads) 121.3 MB
ENCFF939ECG.bam bam (alignments) 3.8 GB
ENCFF947SRB.tsv tsv (transcript quantifications) 24.9 MB
ENCFF952OFY.bigWig bigWig (plus strand signal of all reads) 114.2 MB
ENCFF954RKW.bigWig bigWig (plus strand signal of unique reads) 104.9 MB
ENCFF956RHL.bigWig bigWig (plus strand signal of all reads) 110.9 MB
ENCFF972XAW.bam bam (alignments) 3.7 GB
ENCFF975LTG.bigWig bigWig (plus strand signal of unique reads) 81.3 MB
ENCFF977IGJ.tsv tsv (gene quantifications) 9.5 MB
ENCSR829SLO ENCSR · via encode_api

eCLIP control experiment on K562 against HNRNPU

Homo sapiens

8 data files
FileTypeSize
ENCFF086LQU.bigWig bigWig (plus strand signal of unique reads) 20.8 MB
ENCFF188FGR.bam bam (alignments) 345.5 MB
ENCFF300GEY.fastq fastq (reads) 391.1 MB
ENCFF390OAO.bigWig bigWig (minus strand signal of unique reads) 19.7 MB
ENCFF425BFI.bigWig bigWig (plus strand signal of unique reads) 20.6 MB
ENCFF487SZW.fastq fastq (reads) 409.7 MB
ENCFF590BEJ.bigWig bigWig (minus strand signal of unique reads) 19.8 MB
ENCFF710NVK.bam bam (alignments) 344.3 MB
ENCSR954HAY ENCSR · via encode_api

RNA-seq on K562 cells treated with an shRNA knockdown against SART3. (SART3_BGKLV24_B)

Homo sapiens

92 data files
FileTypeSize
ENCFF012TDJ.bigWig bigWig (minus strand signal of all reads) 109.5 MB
ENCFF034MOC.tsv tsv (differential expression quantifications) 2.0 MB
ENCFF036GUD.bigWig bigWig (minus strand signal of unique reads) 106.2 MB
ENCFF043UGU.fastq fastq (reads) 4.6 GB
ENCFF056GIL.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF061FZI.bigWig bigWig (plus strand signal of all reads) 109.2 MB
ENCFF085NDQ.bigWig bigWig (plus strand signal of unique reads) 82.3 MB
ENCFF125WDI.bigWig bigWig (minus strand signal of all reads) 123.1 MB
ENCFF127MNA.bigWig bigWig (plus strand signal of unique reads) 97.9 MB
ENCFF134ZUW.bam bam (alignments) 8.5 GB
ENCFF142EPM.tsv tsv (transcript quantifications) 25.0 MB
ENCFF146DUY.tsv tsv (gene quantifications) 9.5 MB
ENCFF154VEF.bam bam (alignments) 6.6 GB
ENCFF162EVO.bigWig bigWig (plus strand signal of unique reads) 86.8 MB
ENCFF168QLG.fastq fastq (reads) 4.3 GB
ENCFF175VVL.bigWig bigWig (minus strand signal of unique reads) 95.1 MB
ENCFF176JXP.tsv tsv (transcript quantifications) 27.4 MB
ENCFF190WQW.bam bam (transcriptome alignments) 8.2 GB
ENCFF194YMB.bigWig bigWig (minus strand signal of unique reads) 95.7 MB
ENCFF244NGP.bigWig bigWig (minus strand signal of all reads) 104.0 MB
ENCFF256GRT.bigWig bigWig (minus strand signal of all reads) 107.9 MB
ENCFF263RTT.bigWig bigWig (minus strand signal of all reads) 106.7 MB
ENCFF267YQK.tsv tsv (transcript quantifications) 25.0 MB
ENCFF270KBQ.bigWig bigWig (minus strand signal of unique reads) 98.1 MB
ENCFF280UBV.bam bam (transcriptome alignments) 9.2 GB
ENCFF295YAD.tsv tsv (differential expression quantifications) 2.7 MB
ENCFF302IKH.bam bam (alignments) 6.4 GB
ENCFF310CXH.tsv tsv (gene quantifications) 9.1 MB
ENCFF365MUZ.bigWig bigWig (minus strand signal of all reads) 109.4 MB
ENCFF368SQD.bigWig bigWig (plus strand signal of all reads) 122.4 MB
ENCFF398QUQ.bigWig bigWig (minus strand signal of all reads) 93.6 MB
ENCFF417KWZ.bigWig bigWig (plus strand signal of unique reads) 102.0 MB
ENCFF433UYQ.bigWig bigWig (plus strand signal of unique reads) 109.0 MB
ENCFF441ZUJ.bigWig bigWig (plus strand signal of unique reads) 97.7 MB
ENCFF460SPV.bigWig bigWig (minus strand signal of unique reads) 85.5 MB
ENCFF465XUK.bam bam (alignments) 7.9 GB
ENCFF468JRO.bigWig bigWig (plus strand signal of all reads) 124.8 MB
ENCFF476ILH.tsv tsv (differential expression quantifications) 4.2 MB
ENCFF477PYO.bigWig bigWig (minus strand signal of unique reads) 85.0 MB
ENCFF485BEQ.tsv tsv (transcript quantifications) 25.4 MB
ENCFF488MVU.bam bam (alignments) 6.9 GB
ENCFF492RUG.bigWig bigWig (minus strand signal of unique reads) 107.2 MB
ENCFF494CEV.bigWig bigWig (plus strand signal of unique reads) 100.3 MB
ENCFF500EOY.bam bam (alignments) 6.9 GB
ENCFF508BMB.bigWig bigWig (plus strand signal of all reads) 94.9 MB
ENCFF513FUD.bigWig bigWig (plus strand signal of all reads) 124.8 MB
ENCFF517FBY.fastq fastq (reads) 4.8 GB
ENCFF538IIF.bam bam (alignments) 8.5 GB
ENCFF542LGC.bigWig bigWig (plus strand signal of all reads) 110.8 MB
ENCFF547HOA.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF565IIB.bigWig bigWig (minus strand signal of unique reads) 95.0 MB
ENCFF571EIQ.tar tar (differential splicing quantifications) 16.5 MB
ENCFF571RCD.bigWig bigWig (plus strand signal of unique reads) 97.2 MB
ENCFF590LML.tsv tsv (gene quantifications) 10.4 MB
ENCFF601UZZ.tsv tsv (gene quantifications) 9.1 MB
ENCFF610JSB.fastq fastq (reads) 4.3 GB
ENCFF636DXH.tsv tsv (transcript quantifications) 29.9 MB
ENCFF663KMN.tsv tsv (transcript quantifications) 29.9 MB
ENCFF671PEQ.tar tar (differential splicing quantifications) 4.6 MB
ENCFF690PIV.bam bam (transcriptome alignments) 9.2 GB
ENCFF703KAR.bigWig bigWig (plus strand signal of unique reads) 97.7 MB
ENCFF716KFO.bigWig bigWig (plus strand signal of all reads) 90.2 MB
ENCFF731MZU.bigWig bigWig (plus strand signal of all reads) 110.8 MB
ENCFF736NWN.bigWig bigWig (plus strand signal of unique reads) 87.5 MB
ENCFF740GMN.bigWig bigWig (minus strand signal of all reads) 88.7 MB
ENCFF760OTG.bam bam (transcriptome alignments) 8.2 GB
ENCFF763USF.bigWig bigWig (plus strand signal of all reads) 95.6 MB
ENCFF763XUM.tsv tsv (transcript quantifications) 25.4 MB
ENCFF765QOF.bigWig bigWig (plus strand signal of all reads) 111.8 MB
ENCFF768DTM.bam bam (alignments) 8.3 GB
ENCFF789HTW.bigWig bigWig (minus strand signal of unique reads) 80.3 MB
ENCFF797EXQ.bam bam (alignments) 7.9 GB
ENCFF835MXK.tar tar (differential splicing quantifications) 3.7 MB
ENCFF840BGY.bigWig bigWig (minus strand signal of unique reads) 107.3 MB
ENCFF863XMO.bam bam (alignments) 6.9 GB
ENCFF868QJP.tsv tsv (transcript quantifications) 27.5 MB
ENCFF874TEL.bigWig bigWig (minus strand signal of unique reads) 99.4 MB
ENCFF881IVK.bigWig bigWig (plus strand signal of all reads) 108.3 MB
ENCFF883BCZ.bigWig bigWig (minus strand signal of all reads) 94.0 MB
ENCFF885IJH.bam bam (transcriptome alignments) 10.4 GB
ENCFF888VEG.bam bam (transcriptome alignments) 9.3 GB
ENCFF923HIR.bam bam (alignments) 7.7 GB
ENCFF923HZA.tsv tsv (gene quantifications) 9.5 MB
ENCFF924BPH.bigWig bigWig (minus strand signal of all reads) 109.7 MB
ENCFF930PJF.bigWig bigWig (minus strand signal of all reads) 120.7 MB
ENCFF942HSY.bigWig bigWig (plus strand signal of unique reads) 109.9 MB
ENCFF959FWF.bigWig bigWig (plus strand signal of unique reads) 109.8 MB
ENCFF964AXW.bigWig bigWig (minus strand signal of all reads) 123.1 MB
ENCFF976DLU.bam bam (alignments) 6.4 GB
ENCFF979EAO.bigWig bigWig (minus strand signal of unique reads) 95.7 MB
ENCFF989IVL.bigWig bigWig (plus strand signal of all reads) 106.0 MB
ENCFF999AUR.tsv tsv (gene quantifications) 10.4 MB
ENCSR333PZV ENCSR · via encode_api

eCLIP control experiment on HepG2 against TIA1

Homo sapiens

8 data files
FileTypeSize
ENCFF048JJS.bigWig bigWig (minus strand signal of unique reads) 6.5 MB
ENCFF269QNL.bam bam (alignments) 157.3 MB
ENCFF482VTM.bam bam (alignments) 154.0 MB
ENCFF625OCH.bigWig bigWig (plus strand signal of unique reads) 6.7 MB
ENCFF678FPJ.fastq fastq (reads) 346.6 MB
ENCFF805EWQ.fastq fastq (reads) 333.7 MB
ENCFF818TBT.bigWig bigWig (plus strand signal of unique reads) 6.5 MB
ENCFF854LHZ.bigWig bigWig (minus strand signal of unique reads) 6.3 MB
ENCSR049GND ENCSR · via encode_api

eCLIP control experiment on HepG2 against U2AF2

Homo sapiens

8 data files
FileTypeSize
ENCFF045UZN.bam bam (alignments) 725.7 MB
ENCFF154OPM.bigWig bigWig (minus strand signal of unique reads) 32.2 MB
ENCFF156ZDE.fastq fastq (reads) 575.8 MB
ENCFF327HWM.bigWig bigWig (plus strand signal of unique reads) 33.1 MB
ENCFF566CFJ.bigWig bigWig (minus strand signal of unique reads) 32.5 MB
ENCFF825YLL.bam bam (alignments) 729.7 MB
ENCFF939YLN.fastq fastq (reads) 544.8 MB
ENCFF989JBA.bigWig bigWig (plus strand signal of unique reads) 33.3 MB
ENCSR212ILN ENCSR · via encode_api

eCLIP control experiment on K562 against HNRNPM

Homo sapiens

8 data files
FileTypeSize
ENCFF018ESM.fastq fastq (reads) 278.2 MB
ENCFF030ZRP.bam bam (alignments) 209.9 MB
ENCFF081LPZ.bigWig bigWig (minus strand signal of unique reads) 12.3 MB
ENCFF295DVP.bigWig bigWig (minus strand signal of unique reads) 12.3 MB
ENCFF340UMQ.bigWig bigWig (plus strand signal of unique reads) 12.9 MB
ENCFF532ADX.bam bam (alignments) 210.7 MB
ENCFF589IKK.fastq fastq (reads) 262.3 MB
ENCFF731UYI.bigWig bigWig (plus strand signal of unique reads) 13.0 MB
ENCSR517JDK ENCSR · via encode_api

RNA-seq on HepG2 cells treated with an shRNA knockdown against NKRF. (NKRF_BGHLV27)

Homo sapiens

92 data files
FileTypeSize
ENCFF006FHB.tar tar (differential splicing quantifications) 4.2 MB
ENCFF009QQT.bigWig bigWig (plus strand signal of all reads) 89.4 MB
ENCFF031KXI.bam bam (transcriptome alignments) 7.3 GB
ENCFF036AWT.bigWig bigWig (plus strand signal of all reads) 91.2 MB
ENCFF059YDC.fastq fastq (reads) 2.7 GB
ENCFF076XWK.bigWig bigWig (plus strand signal of unique reads) 82.8 MB
ENCFF100KDW.bam bam (alignments) 5.1 GB
ENCFF104FUI.bigWig bigWig (plus strand signal of unique reads) 83.5 MB
ENCFF104JBY.bigWig bigWig (plus strand signal of all reads) 85.8 MB
ENCFF126YIR.bigWig bigWig (plus strand signal of all reads) 98.9 MB
ENCFF134PVI.bigWig bigWig (plus strand signal of all reads) 92.0 MB
ENCFF138QVH.bigWig bigWig (minus strand signal of unique reads) 81.7 MB
ENCFF153QSG.bigWig bigWig (minus strand signal of all reads) 92.2 MB
ENCFF193XFX.bigWig bigWig (minus strand signal of all reads) 91.1 MB
ENCFF200UPZ.bigWig bigWig (plus strand signal of all reads) 82.2 MB
ENCFF224MFW.bigWig bigWig (plus strand signal of all reads) 92.5 MB
ENCFF227XTZ.bigWig bigWig (plus strand signal of all reads) 98.7 MB
ENCFF229KSS.bam bam (alignments) 4.3 GB
ENCFF230ATW.bam bam (alignments) 4.2 GB
ENCFF241DLU.tsv tsv (transcript quantifications) 24.9 MB
ENCFF252UAI.bam bam (alignments) 3.7 GB
ENCFF265AGP.tsv tsv (transcript quantifications) 27.4 MB
ENCFF282ROZ.bigWig bigWig (plus strand signal of unique reads) 76.7 MB
ENCFF292YKI.bam bam (alignments) 3.7 GB
ENCFF294MHK.bam bam (alignments) 4.5 GB
ENCFF306GMC.bigWig bigWig (plus strand signal of all reads) 93.3 MB
ENCFF327ZQQ.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF349FOR.bigWig bigWig (plus strand signal of unique reads) 83.3 MB
ENCFF350PBC.bam bam (alignments) 3.8 GB
ENCFF364MMF.tsv tsv (transcript quantifications) 24.9 MB
ENCFF371SIX.tar tar (differential splicing quantifications) 3.5 MB
ENCFF376YCK.bam bam (transcriptome alignments) 6.4 GB
ENCFF377SVB.bigWig bigWig (minus strand signal of unique reads) 84.3 MB
ENCFF385UBK.tsv tsv (gene quantifications) 10.4 MB
ENCFF388YTR.bigWig bigWig (plus strand signal of unique reads) 90.2 MB
ENCFF410MFK.fastq fastq (reads) 3.0 GB
ENCFF411QXQ.bam bam (alignments) 5.3 GB
ENCFF412CDF.tsv tsv (differential expression quantifications) 4.2 MB
ENCFF413WTK.bam bam (transcriptome alignments) 7.3 GB
ENCFF418RTR.tsv tsv (transcript quantifications) 25.3 MB
ENCFF464DJN.bam bam (alignments) 4.2 GB
ENCFF468DNA.tsv tsv (gene quantifications) 9.5 MB
ENCFF477ILO.tar tar (differential splicing quantifications) 16.5 MB
ENCFF480WZH.bigWig bigWig (minus strand signal of unique reads) 77.1 MB
ENCFF491TGO.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF495DNV.bigWig bigWig (plus strand signal of unique reads) 78.4 MB
ENCFF503MTU.fastq fastq (reads) 3.0 GB
ENCFF505PLU.bigWig bigWig (plus strand signal of all reads) 90.3 MB
ENCFF512VTF.tsv tsv (transcript quantifications) 27.4 MB
ENCFF516ULJ.bam bam (alignments) 4.7 GB
ENCFF520MTV.bigWig bigWig (plus strand signal of unique reads) 89.6 MB
ENCFF520VDX.tsv tsv (transcript quantifications) 25.3 MB
ENCFF545FAY.bigWig bigWig (minus strand signal of all reads) 88.3 MB
ENCFF579YVD.bigWig bigWig (minus strand signal of unique reads) 81.1 MB
ENCFF601SLU.bigWig bigWig (plus strand signal of all reads) 99.3 MB
ENCFF604HNK.bam bam (transcriptome alignments) 6.4 GB
ENCFF628MYN.bigWig bigWig (plus strand signal of all reads) 83.1 MB
ENCFF631QFA.bigWig bigWig (minus strand signal of all reads) 82.3 MB
ENCFF634MEY.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF645CDM.bigWig bigWig (minus strand signal of all reads) 81.1 MB
ENCFF655OFC.tsv tsv (transcript quantifications) 29.8 MB
ENCFF677VGL.bigWig bigWig (minus strand signal of unique reads) 84.8 MB
ENCFF687DXA.bigWig bigWig (plus strand signal of unique reads) 79.6 MB
ENCFF699RGL.bigWig bigWig (minus strand signal of all reads) 89.5 MB
ENCFF714DHX.bigWig bigWig (minus strand signal of unique reads) 88.6 MB
ENCFF728VLN.bigWig bigWig (minus strand signal of all reads) 98.5 MB
ENCFF730WWB.bigWig bigWig (minus strand signal of all reads) 90.4 MB
ENCFF733JQU.bigWig bigWig (minus strand signal of unique reads) 78.1 MB
ENCFF734LZZ.fastq fastq (reads) 2.7 GB
ENCFF739MRK.tsv tsv (differential expression quantifications) 5.5 MB
ENCFF762GOI.bigWig bigWig (plus strand signal of unique reads) 85.9 MB
ENCFF765NMD.bigWig bigWig (plus strand signal of unique reads) 82.9 MB
ENCFF793QDL.tsv tsv (gene quantifications) 9.5 MB
ENCFF800FTE.bigWig bigWig (minus strand signal of unique reads) 81.9 MB
ENCFF800QFY.bigWig bigWig (minus strand signal of all reads) 98.0 MB
ENCFF811XRP.bigWig bigWig (plus strand signal of unique reads) 89.4 MB
ENCFF813ZNP.bigWig bigWig (plus strand signal of unique reads) 86.2 MB
ENCFF837EVH.bam bam (alignments) 5.3 GB
ENCFF838TZC.bigWig bigWig (minus strand signal of all reads) 91.6 MB
ENCFF852DNO.bigWig bigWig (minus strand signal of unique reads) 88.0 MB
ENCFF852VUB.tsv tsv (gene quantifications) 9.1 MB
ENCFF853RMC.tsv tsv (transcript quantifications) 29.8 MB
ENCFF887OVQ.tsv tsv (gene quantifications) 10.4 MB
ENCFF895VCV.tsv tsv (gene quantifications) 9.1 MB
ENCFF895YXH.bam bam (alignments) 4.7 GB
ENCFF938HWD.bam bam (transcriptome alignments) 8.3 GB
ENCFF946DPK.bigWig bigWig (minus strand signal of unique reads) 81.3 MB
ENCFF947JNZ.bigWig bigWig (minus strand signal of unique reads) 87.7 MB
ENCFF961QXN.bam bam (transcriptome alignments) 7.2 GB
ENCFF981REJ.bigWig bigWig (minus strand signal of all reads) 97.8 MB
ENCFF988BHK.bigWig bigWig (minus strand signal of all reads) 84.8 MB
ENCFF997ZEM.bigWig bigWig (minus strand signal of unique reads) 75.1 MB
ENCSR040WAK ENCSR · via encode_api

RNA-seq on HepG2 cells treated with an shRNA knockdown against CALR. (CALR_BGHLV23)

Homo sapiens

92 data files
FileTypeSize
ENCFF021IEX.tsv tsv (transcript quantifications) 27.3 MB
ENCFF038KXJ.tsv tsv (transcript quantifications) 29.9 MB
ENCFF045ZWI.bigWig bigWig (minus strand signal of unique reads) 57.4 MB
ENCFF046SFB.bigWig bigWig (minus strand signal of all reads) 66.8 MB
ENCFF071ABF.bam bam (alignments) 3.5 GB
ENCFF075KWM.bam bam (alignments) 3.5 GB
ENCFF076UJT.tsv tsv (transcript quantifications) 25.0 MB
ENCFF080GES.fastq fastq (reads) 2.8 GB
ENCFF081MJU.fastq fastq (reads) 2.8 GB
ENCFF089SET.tsv tsv (differential expression quantifications) 4.3 MB
ENCFF109FHM.bigWig bigWig (plus strand signal of unique reads) 62.1 MB
ENCFF110BVT.bam bam (alignments) 4.9 GB
ENCFF115THD.bam bam (alignments) 4.2 GB
ENCFF116LGA.bigWig bigWig (plus strand signal of unique reads) 62.8 MB
ENCFF122TJF.bigWig bigWig (plus strand signal of unique reads) 59.3 MB
ENCFF125SBS.bigWig bigWig (minus strand signal of all reads) 69.2 MB
ENCFF134VUZ.tsv tsv (transcript quantifications) 29.9 MB
ENCFF137FIH.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF165HWK.bam bam (alignments) 4.1 GB
ENCFF176QGI.bigWig bigWig (plus strand signal of all reads) 76.7 MB
ENCFF183SCT.tsv tsv (transcript quantifications) 25.4 MB
ENCFF203WIB.tsv tsv (gene quantifications) 10.4 MB
ENCFF222SXT.bigWig bigWig (minus strand signal of unique reads) 63.5 MB
ENCFF231WRU.bigWig bigWig (minus strand signal of unique reads) 63.1 MB
ENCFF259WHU.bigWig bigWig (minus strand signal of unique reads) 61.0 MB
ENCFF264WDI.bigWig bigWig (minus strand signal of all reads) 75.9 MB
ENCFF279TWU.bigWig bigWig (plus strand signal of all reads) 68.1 MB
ENCFF287NLB.bigWig bigWig (minus strand signal of unique reads) 67.8 MB
ENCFF307QCX.bigWig bigWig (plus strand signal of all reads) 66.4 MB
ENCFF309OJV.bigWig bigWig (plus strand signal of all reads) 62.2 MB
ENCFF330NGC.bigWig bigWig (minus strand signal of unique reads) 67.8 MB
ENCFF342CLG.bigWig bigWig (minus strand signal of all reads) 68.5 MB
ENCFF354FBX.bigWig bigWig (minus strand signal of unique reads) 57.7 MB
ENCFF356FYS.bigWig bigWig (plus strand signal of unique reads) 69.7 MB
ENCFF364IAB.bigWig bigWig (minus strand signal of all reads) 67.9 MB
ENCFF391PXR.bigWig bigWig (plus strand signal of unique reads) 64.7 MB
ENCFF405WZL.bigWig bigWig (minus strand signal of unique reads) 53.9 MB
ENCFF411WCN.bigWig bigWig (minus strand signal of all reads) 69.2 MB
ENCFF416BQH.bigWig bigWig (minus strand signal of all reads) 61.2 MB
ENCFF417YBX.bigWig bigWig (plus strand signal of all reads) 69.6 MB
ENCFF418UCJ.bam bam (alignments) 3.5 GB
ENCFF427MTH.tsv tsv (gene quantifications) 9.1 MB
ENCFF430HLH.bigWig bigWig (minus strand signal of unique reads) 61.2 MB
ENCFF443BWG.bigWig bigWig (plus strand signal of unique reads) 62.6 MB
ENCFF446BLY.bam bam (transcriptome alignments) 6.8 GB
ENCFF455ZTE.bam bam (alignments) 4.2 GB
ENCFF482HBV.bam bam (transcriptome alignments) 5.1 GB
ENCFF488QAT.fastq fastq (reads) 2.4 GB
ENCFF495QHS.bam bam (alignments) 4.1 GB
ENCFF505UPQ.tar tar (differential splicing quantifications) 2.8 MB
ENCFF526PUW.tsv tsv (transcript quantifications) 25.4 MB
ENCFF528ECH.tsv tsv (gene quantifications) 9.1 MB
ENCFF529SWP.bigWig bigWig (plus strand signal of all reads) 59.9 MB
ENCFF563KHL.tsv tsv (gene quantifications) 10.4 MB
ENCFF564GBC.bam bam (alignments) 4.8 GB
ENCFF574AWA.tsv tsv (differential expression quantifications) 5.5 MB
ENCFF577QKE.bigWig bigWig (plus strand signal of all reads) 77.3 MB
ENCFF590HTO.tsv tsv (differential expression quantifications) 2.0 MB
ENCFF595RUQ.bigWig bigWig (minus strand signal of all reads) 76.0 MB
ENCFF614EVM.bam bam (transcriptome alignments) 6.0 GB
ENCFF632VHX.bigWig bigWig (plus strand signal of all reads) 77.4 MB
ENCFF638DTW.bigWig bigWig (plus strand signal of unique reads) 55.5 MB
ENCFF642JMQ.bigWig bigWig (plus strand signal of all reads) 70.4 MB
ENCFF653NYZ.bam bam (transcriptome alignments) 6.1 GB
ENCFF660RZD.bigWig bigWig (minus strand signal of all reads) 75.4 MB
ENCFF662LRN.tsv tsv (gene quantifications) 9.5 MB
ENCFF666ZHO.tar tar (differential splicing quantifications) 3.4 MB
ENCFF667QZN.bam bam (alignments) 4.9 GB
ENCFF675VOX.bigWig bigWig (minus strand signal of all reads) 58.6 MB
ENCFF678TFD.bigWig bigWig (minus strand signal of all reads) 65.0 MB
ENCFF701BPU.bigWig bigWig (plus strand signal of unique reads) 69.7 MB
ENCFF771CPQ.bigWig bigWig (minus strand signal of unique reads) 61.0 MB
ENCFF792JWY.bigWig bigWig (plus strand signal of all reads) 69.3 MB
ENCFF818UBH.bigWig bigWig (plus strand signal of unique reads) 69.6 MB
ENCFF819GHU.bam bam (transcriptome alignments) 5.7 GB
ENCFF826UHK.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF833QYJ.bigWig bigWig (plus strand signal of unique reads) 58.8 MB
ENCFF843QMA.bigWig bigWig (plus strand signal of all reads) 62.7 MB
ENCFF850YPN.tsv tsv (transcript quantifications) 25.0 MB
ENCFF853HWX.bigWig bigWig (minus strand signal of unique reads) 60.3 MB
ENCFF854WNV.bigWig bigWig (plus strand signal of unique reads) 65.3 MB
ENCFF862YLD.bam bam (alignments) 4.1 GB
ENCFF877WQU.bigWig bigWig (plus strand signal of all reads) 70.3 MB
ENCFF878SSX.tsv tsv (gene quantifications) 9.4 MB
ENCFF899QYA.tsv tsv (transcript quantifications) 27.3 MB
ENCFF905FOZ.tar tar (differential splicing quantifications) 15.0 MB
ENCFF918IAQ.bigWig bigWig (minus strand signal of all reads) 61.5 MB
ENCFF921UZV.bigWig bigWig (minus strand signal of unique reads) 67.8 MB
ENCFF967YIH.bam bam (alignments) 4.1 GB
ENCFF972JGX.bam bam (transcriptome alignments) 5.0 GB
ENCFF986YSH.bigWig bigWig (plus strand signal of unique reads) 62.6 MB
ENCFF992IIL.fastq fastq (reads) 2.4 GB
ENCSR945XKW ENCSR · via encode_api

RNA-seq on HepG2 cells treated with an shRNA knockdown against PUM1. (PUM1-BGHLV23)

Homo sapiens

92 data files
FileTypeSize
ENCFF005EIM.bam bam (alignments) 4.4 GB
ENCFF009MHQ.bam bam (transcriptome alignments) 6.3 GB
ENCFF021MMK.bam bam (alignments) 5.2 GB
ENCFF024QBL.bam bam (transcriptome alignments) 7.3 GB
ENCFF027NOW.tsv tsv (differential expression quantifications) 2.0 MB
ENCFF058LPN.bigWig bigWig (plus strand signal of unique reads) 87.5 MB
ENCFF072CPO.bigWig bigWig (plus strand signal of all reads) 78.5 MB
ENCFF072OJZ.bigWig bigWig (minus strand signal of unique reads) 85.0 MB
ENCFF076GJK.tsv tsv (gene quantifications) 9.5 MB
ENCFF079KRI.fastq fastq (reads) 3.2 GB
ENCFF103NGR.tsv tsv (transcript quantifications) 24.9 MB
ENCFF116ERZ.bam bam (alignments) 5.2 GB
ENCFF119GSL.bam bam (transcriptome alignments) 7.0 GB
ENCFF136FJH.bigWig bigWig (minus strand signal of unique reads) 79.8 MB
ENCFF151AXV.bigWig bigWig (minus strand signal of unique reads) 77.8 MB
ENCFF164VDY.bigWig bigWig (minus strand signal of unique reads) 84.6 MB
ENCFF168TCA.bigWig bigWig (minus strand signal of unique reads) 78.7 MB
ENCFF172LMD.tsv tsv (differential expression quantifications) 4.4 MB
ENCFF190PEU.bigWig bigWig (minus strand signal of unique reads) 85.1 MB
ENCFF192UCY.bigWig bigWig (plus strand signal of unique reads) 80.4 MB
ENCFF197EQR.tsv tsv (transcript quantifications) 25.3 MB
ENCFF230XEA.bam bam (alignments) 5.1 GB
ENCFF236RQX.bigWig bigWig (plus strand signal of all reads) 96.9 MB
ENCFF249MMH.bam bam (alignments) 5.2 GB
ENCFF261TUX.bam bam (alignments) 5.1 GB
ENCFF285HDM.bigWig bigWig (plus strand signal of unique reads) 87.4 MB
ENCFF295SPW.bigWig bigWig (plus strand signal of all reads) 96.9 MB
ENCFF299IIX.bigWig bigWig (minus strand signal of all reads) 87.9 MB
ENCFF300LBV.bam bam (alignments) 5.9 GB
ENCFF315BZI.bigWig bigWig (plus strand signal of all reads) 89.6 MB
ENCFF331HST.tsv tsv (transcript quantifications) 24.9 MB
ENCFF336EJB.bigWig bigWig (minus strand signal of all reads) 78.3 MB
ENCFF353INV.bigWig bigWig (minus strand signal of unique reads) 71.5 MB
ENCFF357TKZ.bigWig bigWig (minus strand signal of unique reads) 73.6 MB
ENCFF369HED.tsv tsv (gene quantifications) 10.4 MB
ENCFF369XRN.bigWig bigWig (plus strand signal of all reads) 79.9 MB
ENCFF409JYL.tsv tsv (gene quantifications) 10.4 MB
ENCFF419SBS.bigWig bigWig (minus strand signal of all reads) 87.9 MB
ENCFF426NHL.bigWig bigWig (plus strand signal of unique reads) 81.9 MB
ENCFF431DLG.tsv tsv (transcript quantifications) 25.3 MB
ENCFF431KON.tsv tsv (transcript quantifications) 27.3 MB
ENCFF433MJB.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF434YCL.tsv tsv (gene quantifications) 9.1 MB
ENCFF439ARK.bigWig bigWig (plus strand signal of unique reads) 80.9 MB
ENCFF458MAB.bigWig bigWig (minus strand signal of all reads) 95.2 MB
ENCFF469FXH.bigWig bigWig (plus strand signal of all reads) 88.5 MB
ENCFF478JYY.bigWig bigWig (minus strand signal of all reads) 85.8 MB
ENCFF484DYL.tsv tsv (transcript quantifications) 29.8 MB
ENCFF488DZE.tar tar (differential splicing quantifications) 17.8 MB
ENCFF501GRK.fastq fastq (reads) 2.8 GB
ENCFF514EFX.bam bam (alignments) 6.1 GB
ENCFF514TCA.bigWig bigWig (minus strand signal of all reads) 79.8 MB
ENCFF529YUI.bigWig bigWig (plus strand signal of all reads) 87.6 MB
ENCFF545SDR.bigWig bigWig (plus strand signal of all reads) 95.9 MB
ENCFF560GBW.tar tar (differential splicing quantifications) 4.8 MB
ENCFF580QKU.bigWig bigWig (plus strand signal of unique reads) 80.1 MB
ENCFF588TKE.bigWig bigWig (plus strand signal of unique reads) 80.1 MB
ENCFF617AAX.tsv tsv (gene quantifications) 9.1 MB
ENCFF621ZKN.bam bam (alignments) 4.5 GB
ENCFF622VTW.bigWig bigWig (plus strand signal of unique reads) 86.9 MB
ENCFF624FXB.tsv tsv (gene quantifications) 9.5 MB
ENCFF631NHC.fastq fastq (reads) 3.3 GB
ENCFF633FQI.bigWig bigWig (minus strand signal of unique reads) 79.8 MB
ENCFF641KTW.bam bam (transcriptome alignments) 7.4 GB
ENCFF653HYB.fastq fastq (reads) 2.8 GB
ENCFF656HFZ.bam bam (alignments) 5.1 GB
ENCFF658CZK.bam bam (alignments) 4.4 GB
ENCFF660NYZ.tar tar (differential splicing quantifications) 3.7 MB
ENCFF669WOK.bigWig bigWig (plus strand signal of all reads) 84.9 MB
ENCFF697BQZ.bigWig bigWig (minus strand signal of all reads) 83.1 MB
ENCFF718VVQ.bigWig bigWig (minus strand signal of all reads) 95.2 MB
ENCFF734FIR.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF752RNS.bigWig bigWig (plus strand signal of unique reads) 82.1 MB
ENCFF768YTX.bigWig bigWig (minus strand signal of all reads) 76.9 MB
ENCFF769DMJ.bigWig bigWig (plus strand signal of unique reads) 75.8 MB
ENCFF798PII.tsv tsv (differential expression quantifications) 3.0 MB
ENCFF799DHN.tsv tsv (transcript quantifications) 27.4 MB
ENCFF800PCX.bam bam (alignments) 6.1 GB
ENCFF809SDT.bigWig bigWig (plus strand signal of unique reads) 73.7 MB
ENCFF816VHG.tsv tsv (transcript quantifications) 29.8 MB
ENCFF820PCU.bam bam (transcriptome alignments) 8.2 GB
ENCFF827CYX.bigWig bigWig (plus strand signal of all reads) 89.6 MB
ENCFF842YBM.bigWig bigWig (minus strand signal of all reads) 94.4 MB
ENCFF852ADD.bigWig bigWig (minus strand signal of unique reads) 78.2 MB
ENCFF886YKS.bigWig bigWig (plus strand signal of all reads) 86.6 MB
ENCFF892JRE.bigWig bigWig (minus strand signal of all reads) 87.0 MB
ENCFF911CVR.bigWig bigWig (plus strand signal of unique reads) 75.6 MB
ENCFF932DTY.bigWig bigWig (minus strand signal of all reads) 85.0 MB
ENCFF935NBR.bigWig bigWig (minus strand signal of unique reads) 73.6 MB
ENCFF937QSQ.bigWig bigWig (plus strand signal of all reads) 81.5 MB
ENCFF979FWA.bigWig bigWig (minus strand signal of unique reads) 77.8 MB
ENCFF992BJZ.bam bam (transcriptome alignments) 6.3 GB
ENCSR792MRQ ENCSR · via encode_api

Control ChIP-seq on HepG2

Homo sapiens

16 data files
FileTypeSize
ENCFF017VZP.fastq fastq (reads) 1.8 GB
ENCFF029QSG.bam bam (unfiltered alignments) 2.3 GB
ENCFF080OQT.bam bam (unfiltered alignments) 2.3 GB
ENCFF158NJD.bam bam (alignments) 1.8 GB
ENCFF192EBX.bam bam (alignments) 1.7 GB
ENCFF274QEC.bam bam (alignments) 1.8 GB
ENCFF293GCS.bam bam (unfiltered alignments) 2.3 GB
ENCFF298FEZ.fastq fastq (reads) 1.7 GB
ENCFF405FNP.bam bam (alignments) 1.8 GB
ENCFF604LXX.bam bam (alignments) 1.8 GB
ENCFF608RAU.bam bam (unfiltered alignments) 2.4 GB
ENCFF695XBC.bam bam (alignments) 1.7 GB
ENCFF732BTE.bam bam (alignments) 1.7 GB
ENCFF773DJG.bam bam (alignments) 1.8 GB
ENCFF864WWH.bam bam (unfiltered alignments) 2.3 GB
ENCFF945EEA.bam bam (unfiltered alignments) 2.3 GB
ENCSR951YCV ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) pulldown experiment against SFPQ

14 data files
FileTypeSize
ENCFF020VFS.tsv tsv (library fraction) 1.1 MB
ENCFF092VIT.fastq fastq (reads) 480.7 MB
ENCFF187CTW.tsv tsv (library fraction) 264.5 KB
ENCFF234GJL.tsv tsv (enrichment) 10.0 KB
ENCFF360OVB.tsv tsv (enrichment) 686.0 KB
ENCFF494LLV.tsv tsv (enrichment) 167.7 KB
ENCFF597YAL.fastq fastq (reads) 368.4 MB
ENCFF642XCH.fastq fastq (reads) 535.5 MB
ENCFF702OTR.tsv tsv (library fraction) 15.3 KB
ENCFF728KCD.bed bed (peaks) 171.5 KB
ENCFF852PPY.fastq fastq (reads) 504.0 MB
ENCFF859JYQ.tsv tsv (library fraction) 64.1 KB
ENCFF890ORL.tsv tsv (enrichment) 41.0 KB
ENCFF980WQW.fastq fastq (reads) 521.0 MB
ENCSR079WWH ENCSR · via encode_api

Control ChIP-seq on HepG2

Homo sapiens

14 data files
FileTypeSize
ENCFF007VMU.bam bam (unfiltered alignments) 2.1 GB
ENCFF011ZUM.fastq fastq (reads) 1.5 GB
ENCFF043KRZ.bam bam (alignments) 1.7 GB
ENCFF096KCE.bam bam (alignments) 1.6 GB
ENCFF120QOW.bam bam (unfiltered alignments) 1.9 GB
ENCFF154PCC.bam bam (alignments) 1.5 GB
ENCFF197MJX.fastq fastq (reads) 1.3 GB
ENCFF290GVR.bam bam (unfiltered alignments) 1.9 GB
ENCFF292YYU.bam bam (unfiltered alignments) 2.1 GB
ENCFF563YRA.bam bam (alignments) 1.6 GB
ENCFF629YZR.bam bam (alignments) 1.5 GB
ENCFF818ZRR.bam bam (unfiltered alignments) 1.9 GB
ENCFF918AQS.bam bam (alignments) 1.5 GB
ENCFF952YHB.bam bam (unfiltered alignments) 2.1 GB
ENCSR563YIS ENCSR · via encode_api

RNA-seq on K562 cells treated with an shRNA knockdown against HNRNPL. (HNRNPL_BGKLV25)

Homo sapiens

92 data files
FileTypeSize
ENCFF009LDF.bam bam (alignments) 6.1 GB
ENCFF021HOL.tsv tsv (differential expression quantifications) 4.5 MB
ENCFF030VKM.tsv tsv (gene quantifications) 9.5 MB
ENCFF044KYO.bigWig bigWig (plus strand signal of unique reads) 84.7 MB
ENCFF045NGT.bigWig bigWig (plus strand signal of unique reads) 88.9 MB
ENCFF064IDI.fastq fastq (reads) 3.7 GB
ENCFF076ZKD.bigWig bigWig (plus strand signal of all reads) 95.4 MB
ENCFF080JPG.tar tar (differential splicing quantifications) 4.3 MB
ENCFF088XNE.tar tar (differential splicing quantifications) 17.0 MB
ENCFF089IXL.bigWig bigWig (minus strand signal of all reads) 107.6 MB
ENCFF108UOW.tsv tsv (gene quantifications) 10.4 MB
ENCFF111MLX.bam bam (transcriptome alignments) 7.2 GB
ENCFF130JJH.bigWig bigWig (minus strand signal of unique reads) 94.7 MB
ENCFF141QRT.bam bam (alignments) 5.8 GB
ENCFF167AJD.bigWig bigWig (minus strand signal of unique reads) 88.1 MB
ENCFF193JUU.bigWig bigWig (plus strand signal of all reads) 90.6 MB
ENCFF199JRY.bigWig bigWig (minus strand signal of all reads) 94.6 MB
ENCFF202QFQ.bigWig bigWig (minus strand signal of unique reads) 94.3 MB
ENCFF216RLV.bam bam (alignments) 5.8 GB
ENCFF240QNX.bam bam (alignments) 6.7 GB
ENCFF243WXZ.tsv tsv (transcript quantifications) 27.5 MB
ENCFF267HAH.bam bam (transcriptome alignments) 6.7 GB
ENCFF275CZS.bigWig bigWig (plus strand signal of unique reads) 101.3 MB
ENCFF292ZZF.bigWig bigWig (plus strand signal of all reads) 114.4 MB
ENCFF293OPS.bigWig bigWig (plus strand signal of all reads) 93.7 MB
ENCFF302TYU.tsv tsv (transcript quantifications) 25.3 MB
ENCFF306DBE.bam bam (alignments) 5.3 GB
ENCFF318LYN.bigWig bigWig (plus strand signal of unique reads) 81.4 MB
ENCFF330DRZ.tsv tsv (gene quantifications) 9.1 MB
ENCFF340QRE.bigWig bigWig (minus strand signal of unique reads) 79.6 MB
ENCFF342IML.tsv tsv (transcript quantifications) 25.3 MB
ENCFF350GON.bam bam (alignments) 5.3 GB
ENCFF362IDZ.bigWig bigWig (plus strand signal of all reads) 89.1 MB
ENCFF362MCJ.tsv tsv (differential expression quantifications) 3.0 MB
ENCFF386XNY.bam bam (transcriptome alignments) 7.6 GB
ENCFF422GAJ.bigWig bigWig (minus strand signal of unique reads) 99.7 MB
ENCFF424ZWW.bam bam (alignments) 5.4 GB
ENCFF428JFQ.bigWig bigWig (plus strand signal of all reads) 97.5 MB
ENCFF453OBH.bigWig bigWig (minus strand signal of all reads) 113.1 MB
ENCFF463PIA.bigWig bigWig (minus strand signal of unique reads) 99.7 MB
ENCFF467XNJ.tar tar (differential splicing quantifications) 5.3 MB
ENCFF474TXB.bam bam (alignments) 7.6 GB
ENCFF477YNQ.bigWig bigWig (minus strand signal of all reads) 88.0 MB
ENCFF482NKG.bigWig bigWig (plus strand signal of all reads) 109.1 MB
ENCFF498JTB.bigWig bigWig (plus strand signal of unique reads) 101.3 MB
ENCFF504DVK.tsv tsv (gene quantifications) 10.4 MB
ENCFF529LIT.fastq fastq (reads) 3.7 GB
ENCFF533ZOY.bigWig bigWig (minus strand signal of all reads) 96.1 MB
ENCFF544YAM.bigWig bigWig (plus strand signal of all reads) 109.1 MB
ENCFF560QWL.tsv tsv (differential expression quantifications) 2.0 MB
ENCFF577GFK.bigWig bigWig (plus strand signal of all reads) 108.2 MB
ENCFF578XIM.tsv tsv (transcript quantifications) 29.8 MB
ENCFF599DWZ.tsv tsv (gene quantifications) 9.1 MB
ENCFF603TOL.bam bam (transcriptome alignments) 6.7 GB
ENCFF609VSA.bigWig bigWig (minus strand signal of unique reads) 82.6 MB
ENCFF614AAI.bigWig bigWig (plus strand signal of unique reads) 100.0 MB
ENCFF615EOS.bigWig bigWig (minus strand signal of unique reads) 98.1 MB
ENCFF621OWD.bam bam (alignments) 7.0 GB
ENCFF630ZDV.fastq fastq (reads) 3.3 GB
ENCFF634DKI.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF638CZN.bam bam (alignments) 6.4 GB
ENCFF647XQV.bigWig bigWig (plus strand signal of unique reads) 83.9 MB
ENCFF663SVV.bigWig bigWig (minus strand signal of all reads) 108.6 MB
ENCFF684CIL.bam bam (alignments) 6.7 GB
ENCFF688JQU.bigWig bigWig (minus strand signal of all reads) 113.7 MB
ENCFF693ZEV.bigWig bigWig (plus strand signal of unique reads) 95.9 MB
ENCFF698MLQ.bigWig bigWig (minus strand signal of unique reads) 94.1 MB
ENCFF707JVZ.bam bam (transcriptome alignments) 7.3 GB
ENCFF724KGN.bigWig bigWig (plus strand signal of unique reads) 86.1 MB
ENCFF733VTX.bigWig bigWig (plus strand signal of unique reads) 95.5 MB
ENCFF737SKI.bigWig bigWig (minus strand signal of unique reads) 83.0 MB
ENCFF744NDN.bigWig bigWig (plus strand signal of unique reads) 90.0 MB
ENCFF745HII.bigWig bigWig (minus strand signal of unique reads) 84.0 MB
ENCFF766RTA.bigWig bigWig (minus strand signal of all reads) 92.2 MB
ENCFF769KIN.bigWig bigWig (plus strand signal of all reads) 93.3 MB
ENCFF775IHX.tsv tsv (transcript quantifications) 24.9 MB
ENCFF792AUV.bigWig bigWig (minus strand signal of all reads) 92.3 MB
ENCFF812XOF.bigWig bigWig (minus strand signal of all reads) 113.7 MB
ENCFF835EDZ.bam bam (transcriptome alignments) 8.2 GB
ENCFF840GIY.tsv tsv (differential expression quantifications) 1.6 MB
ENCFF860FAZ.tsv tsv (gene quantifications) 9.5 MB
ENCFF874KJZ.bigWig bigWig (minus strand signal of unique reads) 87.4 MB
ENCFF893FCL.bigWig bigWig (plus strand signal of all reads) 114.4 MB
ENCFF902IHE.bam bam (alignments) 7.6 GB
ENCFF916MFC.bigWig bigWig (minus strand signal of all reads) 90.1 MB
ENCFF919ONZ.tsv tsv (transcript quantifications) 29.8 MB
ENCFF938MMI.tsv tsv (transcript quantifications) 24.9 MB
ENCFF951PBI.bigWig bigWig (minus strand signal of all reads) 108.6 MB
ENCFF952CDY.tsv tsv (transcript quantifications) 27.5 MB
ENCFF975GOC.bigWig bigWig (plus strand signal of all reads) 113.9 MB
ENCFF993TUN.fastq fastq (reads) 3.4 GB
ENCFF996FDN.bigWig bigWig (plus strand signal of unique reads) 96.2 MB
ENCSR906EKN ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) pulldown experiment against ILF2

13 data files
FileTypeSize
ENCFF003OLV.fastq fastq (reads) 469.9 MB
ENCFF056ZFM.tsv tsv (enrichment) 168.0 KB
ENCFF085TLW.tsv tsv (enrichment) 10.0 KB
ENCFF096YGY.fastq fastq (reads) 550.5 MB
ENCFF254FHX.tsv tsv (library fraction) 265.7 KB
ENCFF383QAM.fastq fastq (reads) 446.4 MB
ENCFF411LNZ.tsv tsv (library fraction) 1.1 MB
ENCFF529SPJ.tsv tsv (library fraction) 15.0 KB
ENCFF539DBG.fastq fastq (reads) 570.7 MB
ENCFF612KES.tsv tsv (enrichment) 41.0 KB
ENCFF647LEW.fastq fastq (reads) 596.3 MB
ENCFF971PUI.tsv tsv (enrichment) 688.0 KB
ENCFF976DUC.tsv tsv (library fraction) 63.7 KB
ENCSR104OLN ENCSR · via encode_api

shRNA knockdown against ADAR in HepG2 cells followed by RNA-seq. (ADAR-BGHLV20)

Homo sapiens

92 data files
FileTypeSize
ENCFF004PGC.bigWig bigWig (plus strand signal of unique reads) 67.5 MB
ENCFF022CDL.tsv tsv (gene quantifications) 10.4 MB
ENCFF052BFM.bigWig bigWig (plus strand signal of all reads) 74.4 MB
ENCFF055PIS.bigWig bigWig (minus strand signal of all reads) 72.8 MB
ENCFF067GSX.bigWig bigWig (plus strand signal of all reads) 67.9 MB
ENCFF068UBR.bam bam (alignments) 4.0 GB
ENCFF080IGP.bigWig bigWig (plus strand signal of unique reads) 64.1 MB
ENCFF087IGP.bam bam (alignments) 3.4 GB
ENCFF093IHV.bigWig bigWig (plus strand signal of all reads) 75.8 MB
ENCFF094EHV.bigWig bigWig (plus strand signal of unique reads) 63.0 MB
ENCFF130ACQ.bigWig bigWig (minus strand signal of all reads) 72.8 MB
ENCFF133LRT.tsv tsv (transcript quantifications) 27.3 MB
ENCFF135QTM.bam bam (alignments) 3.5 GB
ENCFF136PII.tsv tsv (transcript quantifications) 25.3 MB
ENCFF143WHZ.bigWig bigWig (plus strand signal of unique reads) 68.3 MB
ENCFF164NCV.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF165QYK.bigWig bigWig (plus strand signal of unique reads) 67.6 MB
ENCFF171EYT.bigWig bigWig (minus strand signal of all reads) 66.3 MB
ENCFF225OAS.tsv tsv (transcript quantifications) 27.3 MB
ENCFF227COZ.bam bam (transcriptome alignments) 4.7 GB
ENCFF249ZJM.bigWig bigWig (minus strand signal of all reads) 74.1 MB
ENCFF257PXZ.tar tar (differential splicing quantifications) 3.3 MB
ENCFF268TJK.bigWig bigWig (plus strand signal of all reads) 74.3 MB
ENCFF289XHU.bigWig bigWig (minus strand signal of unique reads) 62.0 MB
ENCFF310LNK.bigWig bigWig (minus strand signal of all reads) 74.1 MB
ENCFF322VNR.tsv tsv (gene quantifications) 9.4 MB
ENCFF353VQT.bigWig bigWig (plus strand signal of all reads) 67.5 MB
ENCFF356XFR.bigWig bigWig (minus strand signal of unique reads) 61.1 MB
ENCFF365ABJ.tar tar (differential splicing quantifications) 2.8 MB
ENCFF366URP.bigWig bigWig (plus strand signal of all reads) 75.8 MB
ENCFF390NMD.bigWig bigWig (minus strand signal of all reads) 65.9 MB
ENCFF390STQ.bigWig bigWig (minus strand signal of all reads) 61.5 MB
ENCFF399OOH.tsv tsv (transcript quantifications) 29.8 MB
ENCFF399YLN.tsv tsv (transcript quantifications) 24.9 MB
ENCFF431DJM.tsv tsv (transcript quantifications) 24.9 MB
ENCFF437CZI.bam bam (alignments) 3.9 GB
ENCFF440ZCF.bam bam (alignments) 3.5 GB
ENCFF452XEM.bam bam (alignments) 3.4 GB
ENCFF474RTC.bigWig bigWig (minus strand signal of unique reads) 64.9 MB
ENCFF491IDZ.bigWig bigWig (plus strand signal of unique reads) 60.2 MB
ENCFF509VUM.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF516CBE.bigWig bigWig (plus strand signal of all reads) 74.3 MB
ENCFF526HRE.fastq fastq (reads) 2.2 GB
ENCFF530TKW.bigWig bigWig (plus strand signal of unique reads) 64.3 MB
ENCFF531TUT.bigWig bigWig (minus strand signal of all reads) 66.9 MB
ENCFF540RTR.bigWig bigWig (plus strand signal of unique reads) 59.3 MB
ENCFF544BSG.bigWig bigWig (minus strand signal of unique reads) 65.5 MB
ENCFF562SON.bam bam (alignments) 4.0 GB
ENCFF593ERZ.fastq fastq (reads) 2.1 GB
ENCFF593LLV.bigWig bigWig (minus strand signal of all reads) 64.5 MB
ENCFF627GOC.bigWig bigWig (minus strand signal of unique reads) 58.1 MB
ENCFF632KSS.bigWig bigWig (minus strand signal of all reads) 61.7 MB
ENCFF632PWW.bigWig bigWig (plus strand signal of all reads) 68.6 MB
ENCFF658QWX.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF666YTL.tsv tsv (differential expression quantifications) 4.3 MB
ENCFF676WAY.bigWig bigWig (plus strand signal of all reads) 65.9 MB
ENCFF686HPW.fastq fastq (reads) 2.2 GB
ENCFF693DDG.bam bam (transcriptome alignments) 5.3 GB
ENCFF697RDK.bam bam (transcriptome alignments) 4.8 GB
ENCFF721DYB.bigWig bigWig (plus strand signal of all reads) 63.2 MB
ENCFF726CCJ.tsv tsv (transcript quantifications) 25.3 MB
ENCFF738AZR.bigWig bigWig (plus strand signal of unique reads) 67.1 MB
ENCFF738RTQ.fastq fastq (reads) 2.0 GB
ENCFF748FOM.bigWig bigWig (minus strand signal of unique reads) 62.3 MB
ENCFF776UVV.bigWig bigWig (plus strand signal of all reads) 63.1 MB
ENCFF778ZHL.tsv tsv (gene quantifications) 10.4 MB
ENCFF790RYO.tsv tsv (gene quantifications) 9.1 MB
ENCFF795HSA.tsv tsv (differential expression quantifications) 5.5 MB
ENCFF805GUI.bigWig bigWig (minus strand signal of all reads) 72.8 MB
ENCFF807PMO.bigWig bigWig (plus strand signal of unique reads) 68.0 MB
ENCFF809OMY.bam bam (transcriptome alignments) 5.2 GB
ENCFF810OBJ.bam bam (alignments) 4.1 GB
ENCFF814THV.tar tar (differential splicing quantifications) 14.5 MB
ENCFF824MGI.bigWig bigWig (minus strand signal of unique reads) 66.1 MB
ENCFF827TVS.bam bam (alignments) 4.0 GB
ENCFF838RLW.tsv tsv (gene quantifications) 9.1 MB
ENCFF841CBS.bam bam (alignments) 3.5 GB
ENCFF858UGZ.bigWig bigWig (plus strand signal of unique reads) 63.1 MB
ENCFF862NOQ.bigWig bigWig (minus strand signal of unique reads) 65.8 MB
ENCFF882QLS.tsv tsv (transcript quantifications) 29.8 MB
ENCFF887UWD.bigWig bigWig (minus strand signal of all reads) 71.8 MB
ENCFF894SKV.bigWig bigWig (minus strand signal of unique reads) 61.1 MB
ENCFF895AYV.bigWig bigWig (plus strand signal of all reads) 73.1 MB
ENCFF903PHP.tsv tsv (gene quantifications) 9.4 MB
ENCFF906PST.bam bam (transcriptome alignments) 4.8 GB
ENCFF920MGR.bigWig bigWig (plus strand signal of unique reads) 68.9 MB
ENCFF927TZT.bigWig bigWig (minus strand signal of unique reads) 65.4 MB
ENCFF936BPB.bigWig bigWig (minus strand signal of unique reads) 66.7 MB
ENCFF951ZVM.bam bam (alignments) 3.4 GB
ENCFF978MSA.bam bam (transcriptome alignments) 4.7 GB
ENCFF983PKD.bigWig bigWig (minus strand signal of unique reads) 57.3 MB
ENCFF994KLD.bam bam (alignments) 4.1 GB
ENCSR967QNT ENCSR · via encode_api

RNA-seq on K562 cells treated with an shRNA knockdown against GPKOW. (GPKOW_BGKLV36)

Homo sapiens

92 data files
FileTypeSize
ENCFF008GAV.bam bam (transcriptome alignments) 5.1 GB
ENCFF017JRP.tsv tsv (gene quantifications) 9.1 MB
ENCFF023NGM.bam bam (transcriptome alignments) 4.7 GB
ENCFF028NUF.tsv tsv (gene quantifications) 10.4 MB
ENCFF028QGS.bigWig bigWig (minus strand signal of all reads) 71.8 MB
ENCFF034GNC.bigWig bigWig (plus strand signal of all reads) 79.1 MB
ENCFF035HFR.bam bam (alignments) 3.4 GB
ENCFF051DHT.bigWig bigWig (minus strand signal of unique reads) 70.2 MB
ENCFF076HWB.bigWig bigWig (plus strand signal of all reads) 78.3 MB
ENCFF098OSV.bigWig bigWig (minus strand signal of unique reads) 70.5 MB
ENCFF106HQR.tsv tsv (gene quantifications) 9.5 MB
ENCFF113JSA.tsv tsv (transcript quantifications) 29.9 MB
ENCFF120UQY.bigWig bigWig (plus strand signal of all reads) 85.5 MB
ENCFF122EWD.bam bam (alignments) 3.2 GB
ENCFF131LSM.bigWig bigWig (minus strand signal of all reads) 77.0 MB
ENCFF133DSZ.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF134XDZ.fastq fastq (reads) 2.5 GB
ENCFF145FQY.fastq fastq (reads) 2.3 GB
ENCFF152ZSQ.bam bam (alignments) 3.4 GB
ENCFF165BLE.bigWig bigWig (plus strand signal of unique reads) 67.5 MB
ENCFF166ASH.tsv tsv (transcript quantifications) 24.9 MB
ENCFF172LSA.bam bam (transcriptome alignments) 5.8 GB
ENCFF193GDP.bigWig bigWig (plus strand signal of unique reads) 81.4 MB
ENCFF197OKR.bigWig bigWig (plus strand signal of unique reads) 82.4 MB
ENCFF202AGB.bigWig bigWig (minus strand signal of unique reads) 80.6 MB
ENCFF206UTF.bam bam (alignments) 3.9 GB
ENCFF216VVP.bigWig bigWig (minus strand signal of unique reads) 74.9 MB
ENCFF219YVA.bigWig bigWig (plus strand signal of all reads) 93.0 MB
ENCFF220JGF.bigWig bigWig (minus strand signal of unique reads) 69.5 MB
ENCFF252YLE.tsv tsv (gene quantifications) 9.5 MB
ENCFF269XCS.tsv tsv (gene quantifications) 10.4 MB
ENCFF283RWE.bigWig bigWig (minus strand signal of all reads) 77.7 MB
ENCFF289EBA.fastq fastq (reads) 2.4 GB
ENCFF320BOL.bam bam (transcriptome alignments) 4.8 GB
ENCFF327VQK.bigWig bigWig (minus strand signal of all reads) 85.9 MB
ENCFF330HHW.bigWig bigWig (minus strand signal of all reads) 82.4 MB
ENCFF333LOW.bigWig bigWig (plus strand signal of all reads) 91.7 MB
ENCFF335MMP.tsv tsv (transcript quantifications) 24.9 MB
ENCFF339ZKB.bigWig bigWig (minus strand signal of unique reads) 80.7 MB
ENCFF364HEI.bigWig bigWig (minus strand signal of all reads) 84.6 MB
ENCFF402EML.tsv tsv (transcript quantifications) 27.4 MB
ENCFF421HCP.bam bam (alignments) 3.9 GB
ENCFF421OPQ.bigWig bigWig (minus strand signal of unique reads) 75.1 MB
ENCFF435FAZ.tsv tsv (differential expression quantifications) 4.4 MB
ENCFF454PAB.bam bam (alignments) 4.1 GB
ENCFF469UTG.fastq fastq (reads) 2.3 GB
ENCFF472DUA.bam bam (alignments) 3.2 GB
ENCFF477DLG.bigWig bigWig (minus strand signal of all reads) 80.3 MB
ENCFF550AGR.bigWig bigWig (plus strand signal of unique reads) 75.9 MB
ENCFF552OYI.tsv tsv (differential expression quantifications) 2.0 MB
ENCFF562LUT.bigWig bigWig (minus strand signal of unique reads) 75.2 MB
ENCFF565IAL.bigWig bigWig (plus strand signal of unique reads) 76.6 MB
ENCFF572LEI.bigWig bigWig (minus strand signal of all reads) 90.6 MB
ENCFF606BSE.tsv tsv (gene quantifications) 9.1 MB
ENCFF611HEK.tar tar (differential splicing quantifications) 13.7 MB
ENCFF619JTA.tsv tsv (transcript quantifications) 29.9 MB
ENCFF624PAZ.bigWig bigWig (plus strand signal of unique reads) 72.2 MB
ENCFF629BHU.bigWig bigWig (minus strand signal of all reads) 75.3 MB
ENCFF630BQG.bigWig bigWig (minus strand signal of unique reads) 65.7 MB
ENCFF634IAE.bigWig bigWig (plus strand signal of unique reads) 76.5 MB
ENCFF666OHY.bigWig bigWig (plus strand signal of all reads) 73.1 MB
ENCFF666PQS.bigWig bigWig (minus strand signal of all reads) 92.0 MB
ENCFF666UJZ.bam bam (transcriptome alignments) 5.1 GB
ENCFF678UYP.tsv tsv (transcript quantifications) 25.4 MB
ENCFF684XYH.bigWig bigWig (plus strand signal of unique reads) 75.5 MB
ENCFF716VWT.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF717CBY.bam bam (transcriptome alignments) 5.4 GB
ENCFF737UHS.bam bam (alignments) 3.2 GB
ENCFF742IUO.bam bam (alignments) 4.2 GB
ENCFF743LTG.bigWig bigWig (plus strand signal of all reads) 81.2 MB
ENCFF775QGA.tar tar (differential splicing quantifications) 3.4 MB
ENCFF792UGJ.bam bam (alignments) 3.4 GB
ENCFF799NBD.bigWig bigWig (minus strand signal of unique reads) 74.5 MB
ENCFF821SCI.bigWig bigWig (plus strand signal of all reads) 86.8 MB
ENCFF834RZF.bam bam (alignments) 3.9 GB
ENCFF837PDM.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF849OKJ.bigWig bigWig (plus strand signal of all reads) 83.8 MB
ENCFF851HVV.bigWig bigWig (plus strand signal of unique reads) 70.8 MB
ENCFF859MOH.tsv tsv (transcript quantifications) 25.4 MB
ENCFF866VPJ.bigWig bigWig (plus strand signal of unique reads) 71.9 MB
ENCFF867XOF.bigWig bigWig (minus strand signal of unique reads) 73.9 MB
ENCFF868VTR.bigWig bigWig (minus strand signal of unique reads) 79.8 MB
ENCFF878AXM.bigWig bigWig (plus strand signal of all reads) 76.2 MB
ENCFF912RTP.bigWig bigWig (minus strand signal of all reads) 85.9 MB
ENCFF945EOO.bigWig bigWig (plus strand signal of all reads) 93.0 MB
ENCFF947JEY.bam bam (alignments) 4.2 GB
ENCFF955KYH.bigWig bigWig (plus strand signal of unique reads) 82.3 MB
ENCFF958MGC.bigWig bigWig (plus strand signal of unique reads) 76.7 MB
ENCFF977DHJ.bigWig bigWig (plus strand signal of all reads) 86.8 MB
ENCFF986YEU.bigWig bigWig (minus strand signal of all reads) 92.0 MB
ENCFF998LNL.tsv tsv (transcript quantifications) 27.4 MB
ENCFF999KQW.tar tar (differential splicing quantifications) 4.0 MB
ENCSR741VUK ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) pulldown experiment against TRA2A

15 data files
FileTypeSize
ENCFF015CJR.bed bed (peaks) 85.3 KB
ENCFF053JOA.fastq fastq (reads) 361.7 MB
ENCFF115SBU.tsv tsv (library fraction) 75.9 KB
ENCFF191NLM.tsv tsv (enrichment) 48.0 KB
ENCFF191XFI.tsv tsv (library fraction) 18.1 KB
ENCFF209PWZ.fastq fastq (reads) 338.7 MB
ENCFF351RRP.tsv tsv (enrichment) 196.0 KB
ENCFF369HLN.fastq fastq (reads) 261.7 MB
ENCFF406VDD.fastq fastq (reads) 234.1 MB
ENCFF425CRZ.bed bed (peaks) 138.6 KB
ENCFF517XHH.tsv tsv (library fraction) 1.2 MB
ENCFF674LSW.fastq fastq (reads) 175.2 MB
ENCFF804SZR.tsv tsv (library fraction) 312.7 KB
ENCFF879MFV.tsv tsv (enrichment) 11.8 KB
ENCFF971NRM.tsv tsv (enrichment) 800.0 KB
ENCSR222LRL ENCSR · via encode_api

RNA-seq on K562 cells treated with an shRNA knockdown against CPSF7. (CPSF7_BGKLV24)

Homo sapiens

92 data files
FileTypeSize
ENCFF016KXK.tsv tsv (gene quantifications) 9.1 MB
ENCFF025AIB.bigWig bigWig (minus strand signal of unique reads) 63.4 MB
ENCFF025BYE.bigWig bigWig (minus strand signal of unique reads) 63.3 MB
ENCFF049YXI.bigWig bigWig (plus strand signal of all reads) 58.3 MB
ENCFF075IUP.bigWig bigWig (plus strand signal of unique reads) 58.8 MB
ENCFF079ZIZ.tsv tsv (gene quantifications) 10.4 MB
ENCFF111WYR.tsv tsv (transcript quantifications) 29.8 MB
ENCFF117UPZ.bam bam (transcriptome alignments) 3.7 GB
ENCFF123NVG.bigWig bigWig (plus strand signal of unique reads) 57.2 MB
ENCFF128MOR.tsv tsv (transcript quantifications) 25.3 MB
ENCFF141YGM.bam bam (alignments) 2.8 GB
ENCFF149AVF.tsv tsv (gene quantifications) 9.4 MB
ENCFF165QCF.bam bam (alignments) 3.2 GB
ENCFF185UOB.bigWig bigWig (minus strand signal of all reads) 72.7 MB
ENCFF197RWU.tsv tsv (transcript quantifications) 24.9 MB
ENCFF206VAJ.bigWig bigWig (minus strand signal of all reads) 68.5 MB
ENCFF208HJC.bigWig bigWig (minus strand signal of all reads) 72.3 MB
ENCFF215QMS.bam bam (alignments) 3.3 GB
ENCFF221LWL.bigWig bigWig (minus strand signal of all reads) 61.3 MB
ENCFF230MSF.bigWig bigWig (minus strand signal of all reads) 57.2 MB
ENCFF231VMQ.bigWig bigWig (minus strand signal of all reads) 62.3 MB
ENCFF233CIB.bigWig bigWig (plus strand signal of all reads) 62.4 MB
ENCFF254RSZ.bigWig bigWig (minus strand signal of unique reads) 52.7 MB
ENCFF255QGO.bigWig bigWig (plus strand signal of all reads) 69.3 MB
ENCFF258USY.bigWig bigWig (plus strand signal of unique reads) 61.6 MB
ENCFF261GXE.tsv tsv (differential expression quantifications) 2.7 MB
ENCFF272MZN.bigWig bigWig (minus strand signal of all reads) 66.4 MB
ENCFF283JYV.fastq fastq (reads) 1.9 GB
ENCFF290TDP.tsv tsv (transcript quantifications) 24.9 MB
ENCFF292LHX.bigWig bigWig (plus strand signal of unique reads) 61.0 MB
ENCFF298RTC.fastq fastq (reads) 1.8 GB
ENCFF301LFO.bigWig bigWig (plus strand signal of unique reads) 61.1 MB
ENCFF313QKR.bigWig bigWig (plus strand signal of unique reads) 58.2 MB
ENCFF314BER.bigWig bigWig (plus strand signal of all reads) 65.3 MB
ENCFF329WQN.bigWig bigWig (minus strand signal of unique reads) 64.5 MB
ENCFF353AWD.bam bam (alignments) 3.3 GB
ENCFF355LCR.bam bam (transcriptome alignments) 4.2 GB
ENCFF374SHA.bam bam (alignments) 3.4 GB
ENCFF388ODB.bigWig bigWig (plus strand signal of unique reads) 65.0 MB
ENCFF393BNN.tsv tsv (differential expression quantifications) 4.0 MB
ENCFF394EIY.bam bam (transcriptome alignments) 3.9 GB
ENCFF434LCT.tsv tsv (gene quantifications) 10.4 MB
ENCFF451XVK.bigWig bigWig (minus strand signal of unique reads) 59.3 MB
ENCFF453GXZ.bigWig bigWig (minus strand signal of all reads) 67.4 MB
ENCFF454NTW.bigWig bigWig (minus strand signal of unique reads) 56.0 MB
ENCFF465REZ.bigWig bigWig (minus strand signal of all reads) 68.5 MB
ENCFF478SXD.bigWig bigWig (plus strand signal of all reads) 69.3 MB
ENCFF485SXV.bigWig bigWig (plus strand signal of unique reads) 54.3 MB
ENCFF507EAI.bigWig bigWig (minus strand signal of unique reads) 57.1 MB
ENCFF517ILO.bigWig bigWig (minus strand signal of all reads) 72.7 MB
ENCFF519FPD.tsv tsv (transcript quantifications) 27.3 MB
ENCFF557VBQ.bigWig bigWig (minus strand signal of unique reads) 56.6 MB
ENCFF558OOZ.bam bam (transcriptome alignments) 4.4 GB
ENCFF569LTY.tar tar (differential splicing quantifications) 3.3 MB
ENCFF576MBS.tsv tsv (differential expression quantifications) 5.4 MB
ENCFF576ZYD.tar tar (differential splicing quantifications) 3.0 MB
ENCFF582ITO.fastq fastq (reads) 1.8 GB
ENCFF589GQJ.bigWig bigWig (plus strand signal of unique reads) 62.4 MB
ENCFF591AHP.bam bam (alignments) 3.4 GB
ENCFF592OVU.fastq fastq (reads) 1.6 GB
ENCFF594DWM.tsv tsv (gene quantifications) 9.4 MB
ENCFF615CWA.bigWig bigWig (plus strand signal of unique reads) 64.9 MB
ENCFF641TUD.tsv tsv (transcript quantifications) 25.3 MB
ENCFF649TRS.bigWig bigWig (plus strand signal of all reads) 60.8 MB
ENCFF670LUK.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF683EAG.bam bam (alignments) 2.7 GB
ENCFF702EAT.bigWig bigWig (minus strand signal of unique reads) 59.7 MB
ENCFF703OAX.bigWig bigWig (minus strand signal of all reads) 60.0 MB
ENCFF714IFT.bam bam (alignments) 2.8 GB
ENCFF723KNZ.bam bam (alignments) 3.3 GB
ENCFF744DWN.bigWig bigWig (plus strand signal of all reads) 73.6 MB
ENCFF746KRQ.bam bam (alignments) 2.7 GB
ENCFF751UKY.bigWig bigWig (plus strand signal of all reads) 73.6 MB
ENCFF765YLK.bam bam (transcriptome alignments) 3.8 GB
ENCFF766DWD.bigWig bigWig (plus strand signal of all reads) 63.5 MB
ENCFF767YOQ.tsv tsv (transcript quantifications) 29.8 MB
ENCFF781NFI.bigWig bigWig (plus strand signal of all reads) 68.3 MB
ENCFF790CBC.bigWig bigWig (minus strand signal of unique reads) 60.2 MB
ENCFF792WEK.bigWig bigWig (plus strand signal of all reads) 67.5 MB
ENCFF794DUK.bam bam (alignments) 2.7 GB
ENCFF820CBV.bigWig bigWig (plus strand signal of unique reads) 66.0 MB
ENCFF827VEV.bigWig bigWig (minus strand signal of all reads) 64.6 MB
ENCFF839IMR.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF847GLJ.bigWig bigWig (minus strand signal of unique reads) 60.9 MB
ENCFF874DBC.tsv tsv (gene quantifications) 9.1 MB
ENCFF885CPZ.bigWig bigWig (plus strand signal of unique reads) 60.7 MB
ENCFF894WYN.bam bam (alignments) 2.9 GB
ENCFF895TQX.bigWig bigWig (plus strand signal of all reads) 73.2 MB
ENCFF920CAZ.tar tar (differential splicing quantifications) 12.9 MB
ENCFF939DKX.tsv tsv (transcript quantifications) 27.3 MB
ENCFF954YPE.bigWig bigWig (minus strand signal of unique reads) 59.5 MB
ENCFF993SWL.bam bam (transcriptome alignments) 3.9 GB
ENCSR660ETT ENCSR · via encode_api

shRNA knockdown against EIF3D in K562 cells followed by RNA-seq. (EIF3D_BGKLV19)

Homo sapiens

92 data files
FileTypeSize
ENCFF014EQO.bigWig bigWig (plus strand signal of all reads) 88.4 MB
ENCFF024VGZ.bigWig bigWig (plus strand signal of unique reads) 89.2 MB
ENCFF035ISH.bigWig bigWig (plus strand signal of unique reads) 84.1 MB
ENCFF041UZG.tsv tsv (gene quantifications) 9.1 MB
ENCFF044SSS.bam bam (alignments) 5.4 GB
ENCFF057IGJ.tsv tsv (gene quantifications) 9.4 MB
ENCFF057LER.bigWig bigWig (plus strand signal of all reads) 82.1 MB
ENCFF062SNI.tsv tsv (transcript quantifications) 27.3 MB
ENCFF080FHK.bam bam (alignments) 3.7 GB
ENCFF107TRJ.bigWig bigWig (minus strand signal of unique reads) 82.5 MB
ENCFF112UMW.tsv tsv (gene quantifications) 9.5 MB
ENCFF115ILG.bigWig bigWig (plus strand signal of unique reads) 77.7 MB
ENCFF115SEX.bigWig bigWig (plus strand signal of unique reads) 88.5 MB
ENCFF126FJI.fastq fastq (reads) 2.3 GB
ENCFF135MLB.bam bam (transcriptome alignments) 5.0 GB
ENCFF137CTC.bam bam (alignments) 4.3 GB
ENCFF146KBG.bam bam (alignments) 4.4 GB
ENCFF170NAN.tar tar (differential splicing quantifications) 4.0 MB
ENCFF175XVT.tar tar (differential splicing quantifications) 4.6 MB
ENCFF176ODI.bigWig bigWig (minus strand signal of all reads) 99.0 MB
ENCFF179LWJ.tsv tsv (differential expression quantifications) 2.7 MB
ENCFF186KUJ.bam bam (alignments) 5.4 GB
ENCFF187XXP.bigWig bigWig (minus strand signal of all reads) 91.6 MB
ENCFF210ANT.tsv tsv (transcript quantifications) 29.8 MB
ENCFF216AYS.fastq fastq (reads) 2.8 GB
ENCFF234MQR.bigWig bigWig (minus strand signal of all reads) 81.3 MB
ENCFF238NJT.bigWig bigWig (plus strand signal of all reads) 83.5 MB
ENCFF255CNH.tsv tsv (transcript quantifications) 24.9 MB
ENCFF258XAH.bigWig bigWig (minus strand signal of unique reads) 87.4 MB
ENCFF259IYH.bigWig bigWig (minus strand signal of unique reads) 72.9 MB
ENCFF270ZZJ.tar tar (differential splicing quantifications) 14.9 MB
ENCFF287MLD.bigWig bigWig (minus strand signal of unique reads) 86.6 MB
ENCFF288NBO.fastq fastq (reads) 2.4 GB
ENCFF296URY.bigWig bigWig (plus strand signal of unique reads) 80.9 MB
ENCFF301DUS.bigWig bigWig (minus strand signal of unique reads) 80.2 MB
ENCFF309MRQ.bam bam (alignments) 4.5 GB
ENCFF315LDF.bigWig bigWig (plus strand signal of all reads) 90.0 MB
ENCFF315ORT.tsv tsv (transcript quantifications) 27.4 MB
ENCFF318CHG.bigWig bigWig (minus strand signal of unique reads) 86.5 MB
ENCFF318VHP.bigWig bigWig (minus strand signal of unique reads) 75.6 MB
ENCFF324GIP.bigWig bigWig (minus strand signal of all reads) 89.0 MB
ENCFF360PAW.bigWig bigWig (plus strand signal of unique reads) 81.9 MB
ENCFF363NNO.bigWig bigWig (plus strand signal of unique reads) 74.7 MB
ENCFF365EOK.bigWig bigWig (plus strand signal of all reads) 92.4 MB
ENCFF392JJC.bigWig bigWig (minus strand signal of all reads) 90.5 MB
ENCFF395SKO.bam bam (transcriptome alignments) 5.1 GB
ENCFF397RUH.bigWig bigWig (minus strand signal of unique reads) 79.0 MB
ENCFF419TAC.bigWig bigWig (plus strand signal of all reads) 97.2 MB
ENCFF432JJE.tsv tsv (transcript quantifications) 24.9 MB
ENCFF443WXY.tsv tsv (gene quantifications) 9.1 MB
ENCFF476ANB.tsv tsv (transcript quantifications) 29.8 MB
ENCFF482KTZ.tsv tsv (gene quantifications) 10.4 MB
ENCFF484KLB.bigWig bigWig (minus strand signal of all reads) 99.1 MB
ENCFF528VFH.tsv tsv (differential expression quantifications) 4.3 MB
ENCFF535NJG.bigWig bigWig (plus strand signal of all reads) 92.4 MB
ENCFF555FGK.tsv tsv (differential expression quantifications) 5.5 MB
ENCFF555QEW.tsv tsv (transcript quantifications) 25.3 MB
ENCFF556ROF.bam bam (transcriptome alignments) 6.4 GB
ENCFF606OQC.bigWig bigWig (minus strand signal of all reads) 79.2 MB
ENCFF618OLM.bigWig bigWig (plus strand signal of unique reads) 82.0 MB
ENCFF619TTB.bam bam (alignments) 4.5 GB
ENCFF624RSG.bam bam (alignments) 4.5 GB
ENCFF649GWD.bigWig bigWig (plus strand signal of all reads) 100.0 MB
ENCFF653JHL.bigWig bigWig (plus strand signal of unique reads) 82.0 MB
ENCFF654IFM.bigWig bigWig (minus strand signal of unique reads) 76.0 MB
ENCFF658WBG.tsv tsv (transcript quantifications) 25.3 MB
ENCFF666APJ.bigWig bigWig (plus strand signal of unique reads) 77.1 MB
ENCFF668XXO.bam bam (alignments) 3.7 GB
ENCFF731KZN.bigWig bigWig (minus strand signal of all reads) 96.3 MB
ENCFF738GGP.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF740DPQ.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF740JNS.bigWig bigWig (minus strand signal of all reads) 91.6 MB
ENCFF740QGC.bigWig bigWig (plus strand signal of all reads) 91.8 MB
ENCFF751DIB.bigWig bigWig (plus strand signal of unique reads) 84.0 MB
ENCFF783MLD.bigWig bigWig (minus strand signal of all reads) 87.0 MB
ENCFF794ZGB.bam bam (alignments) 3.7 GB
ENCFF805SDA.tsv tsv (gene quantifications) 10.4 MB
ENCFF808PKR.bam bam (transcriptome alignments) 6.4 GB
ENCFF824KAF.bigWig bigWig (plus strand signal of all reads) 100.0 MB
ENCFF829ACA.bigWig bigWig (minus strand signal of all reads) 89.5 MB
ENCFF835QMS.bam bam (alignments) 5.3 GB
ENCFF840LQV.bigWig bigWig (plus strand signal of all reads) 90.2 MB
ENCFF846TMX.fastq fastq (reads) 2.9 GB
ENCFF849WCE.bigWig bigWig (minus strand signal of unique reads) 82.1 MB
ENCFF887GRM.bigWig bigWig (minus strand signal of all reads) 82.4 MB
ENCFF899OPP.bam bam (alignments) 4.4 GB
ENCFF920XLY.bigWig bigWig (plus strand signal of all reads) 80.3 MB
ENCFF932EEU.bam bam (transcriptome alignments) 5.7 GB
ENCFF941HLB.bigWig bigWig (plus strand signal of unique reads) 88.3 MB
ENCFF949STG.bam bam (transcriptome alignments) 7.2 GB
ENCFF957JAB.bigWig bigWig (minus strand signal of unique reads) 80.4 MB
ENCFF971ZBG.bigWig bigWig (minus strand signal of unique reads) 80.4 MB
ENCSR379VXW ENCSR · via encode_api

RNA-seq on K562 cells treated with an shRNA knockdown against FKBP4. (FKBP4_BGKLV21)

Homo sapiens

92 data files
FileTypeSize
ENCFF003JEK.bigWig bigWig (plus strand signal of all reads) 73.4 MB
ENCFF022TZT.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF033QZD.tar tar (differential splicing quantifications) 3.5 MB
ENCFF036RKR.bam bam (alignments) 3.0 GB
ENCFF039FVG.bigWig bigWig (plus strand signal of all reads) 67.5 MB
ENCFF058MXX.bam bam (alignments) 3.6 GB
ENCFF071MNZ.fastq fastq (reads) 1.9 GB
ENCFF072OXQ.bigWig bigWig (minus strand signal of unique reads) 64.2 MB
ENCFF089WYG.tsv tsv (gene quantifications) 9.1 MB
ENCFF094BDF.tsv tsv (gene quantifications) 9.4 MB
ENCFF108RNI.bam bam (alignments) 3.6 GB
ENCFF113TPN.bigWig bigWig (plus strand signal of unique reads) 58.6 MB
ENCFF133BHC.bigWig bigWig (plus strand signal of unique reads) 57.4 MB
ENCFF135JOS.fastq fastq (reads) 2.0 GB
ENCFF145MRU.bigWig bigWig (minus strand signal of all reads) 74.3 MB
ENCFF181VTL.bigWig bigWig (minus strand signal of all reads) 66.4 MB
ENCFF197IRQ.tsv tsv (gene quantifications) 10.4 MB
ENCFF200YZY.bam bam (alignments) 3.0 GB
ENCFF201LBK.bam bam (alignments) 3.6 GB
ENCFF210AAL.bigWig bigWig (minus strand signal of all reads) 61.4 MB
ENCFF212CYW.bigWig bigWig (plus strand signal of all reads) 75.5 MB
ENCFF226JQH.bigWig bigWig (plus strand signal of all reads) 62.7 MB
ENCFF237BTB.tsv tsv (differential expression quantifications) 4.2 MB
ENCFF244QRI.bam bam (alignments) 3.0 GB
ENCFF249ATH.bigWig bigWig (minus strand signal of all reads) 61.3 MB
ENCFF255EED.bigWig bigWig (minus strand signal of unique reads) 64.0 MB
ENCFF264JTS.bigWig bigWig (plus strand signal of unique reads) 62.3 MB
ENCFF281LSY.tsv tsv (transcript quantifications) 27.2 MB
ENCFF283PNN.bigWig bigWig (minus strand signal of all reads) 73.2 MB
ENCFF295LQG.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF298VPP.bigWig bigWig (plus strand signal of unique reads) 65.9 MB
ENCFF302OBV.tsv tsv (transcript quantifications) 25.3 MB
ENCFF315ITW.bam bam (alignments) 3.0 GB
ENCFF321AKA.tsv tsv (transcript quantifications) 25.3 MB
ENCFF324JQY.bigWig bigWig (minus strand signal of all reads) 64.8 MB
ENCFF324NUJ.tsv tsv (gene quantifications) 10.4 MB
ENCFF325XRZ.bigWig bigWig (minus strand signal of unique reads) 63.4 MB
ENCFF328SFD.bigWig bigWig (minus strand signal of unique reads) 56.7 MB
ENCFF349CPF.bigWig bigWig (minus strand signal of unique reads) 63.2 MB
ENCFF352WSU.bam bam (alignments) 3.5 GB
ENCFF362ULN.bigWig bigWig (plus strand signal of unique reads) 65.0 MB
ENCFF419GIZ.tsv tsv (gene quantifications) 9.4 MB
ENCFF434GRS.tsv tsv (transcript quantifications) 27.3 MB
ENCFF446OJF.bigWig bigWig (plus strand signal of unique reads) 61.8 MB
ENCFF457PIA.bam bam (alignments) 3.6 GB
ENCFF476UDT.bam bam (transcriptome alignments) 4.1 GB
ENCFF490XHP.bigWig bigWig (plus strand signal of all reads) 65.9 MB
ENCFF520JFY.bigWig bigWig (minus strand signal of unique reads) 64.3 MB
ENCFF526KEH.bigWig bigWig (minus strand signal of all reads) 65.2 MB
ENCFF526KPZ.bigWig bigWig (minus strand signal of unique reads) 60.3 MB
ENCFF538GNK.bigWig bigWig (minus strand signal of unique reads) 60.1 MB
ENCFF555DED.tsv tsv (transcript quantifications) 24.9 MB
ENCFF574AJK.bigWig bigWig (plus strand signal of unique reads) 61.9 MB
ENCFF592IMB.bigWig bigWig (plus strand signal of all reads) 67.1 MB
ENCFF606LIW.bam bam (alignments) 3.6 GB
ENCFF618NHS.bigWig bigWig (plus strand signal of all reads) 62.6 MB
ENCFF622WIT.tsv tsv (differential expression quantifications) 5.5 MB
ENCFF628SBP.bigWig bigWig (plus strand signal of unique reads) 61.8 MB
ENCFF637VII.tar tar (differential splicing quantifications) 3.0 MB
ENCFF638XZR.bigWig bigWig (minus strand signal of all reads) 72.3 MB
ENCFF644GUA.tsv tsv (transcript quantifications) 29.8 MB
ENCFF646FPP.bam bam (alignments) 3.0 GB
ENCFF646XUN.bigWig bigWig (plus strand signal of all reads) 76.6 MB
ENCFF649GMW.bam bam (transcriptome alignments) 4.1 GB
ENCFF656BTE.bigWig bigWig (minus strand signal of all reads) 75.4 MB
ENCFF684OXE.bigWig bigWig (plus strand signal of unique reads) 65.2 MB
ENCFF688RHD.bigWig bigWig (plus strand signal of all reads) 76.6 MB
ENCFF699LGL.bam bam (transcriptome alignments) 4.0 GB
ENCFF710GWL.bigWig bigWig (minus strand signal of all reads) 73.3 MB
ENCFF721VZL.bam bam (transcriptome alignments) 4.0 GB
ENCFF727OBJ.bigWig bigWig (minus strand signal of all reads) 65.8 MB
ENCFF733BJL.bigWig bigWig (minus strand signal of unique reads) 60.5 MB
ENCFF733WDC.tsv tsv (transcript quantifications) 24.9 MB
ENCFF734CDI.bigWig bigWig (plus strand signal of unique reads) 65.9 MB
ENCFF758EJL.bigWig bigWig (minus strand signal of unique reads) 60.2 MB
ENCFF779BON.fastq fastq (reads) 1.8 GB
ENCFF781KXB.bigWig bigWig (plus strand signal of all reads) 74.4 MB
ENCFF786TWE.bigWig bigWig (plus strand signal of all reads) 66.6 MB
ENCFF802QDU.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF806DFE.tsv tsv (gene quantifications) 9.1 MB
ENCFF831FIW.bigWig bigWig (plus strand signal of all reads) 74.4 MB
ENCFF842KVN.tsv tsv (transcript quantifications) 29.8 MB
ENCFF846KLE.bam bam (alignments) 3.0 GB
ENCFF855FNR.bam bam (transcriptome alignments) 4.6 GB
ENCFF888TRV.tar tar (differential splicing quantifications) 14.0 MB
ENCFF889HXU.bigWig bigWig (plus strand signal of unique reads) 66.0 MB
ENCFF910VIE.bam bam (transcriptome alignments) 4.5 GB
ENCFF911IEH.fastq fastq (reads) 2.0 GB
ENCFF914TTT.bigWig bigWig (minus strand signal of unique reads) 55.5 MB
ENCFF937QXV.bigWig bigWig (plus strand signal of unique reads) 66.5 MB
ENCFF962UXD.bigWig bigWig (minus strand signal of all reads) 75.5 MB
ENCFF971NTQ.bigWig bigWig (minus strand signal of unique reads) 64.7 MB
ENCSR222CSF ENCSR · via encode_api

shRNA knockdown against DDX28 in HepG2 cells followed by RNA-seq. (DDX28_BGHLV17)

Homo sapiens

92 data files
FileTypeSize
ENCFF010YDF.bigWig bigWig (minus strand signal of unique reads) 51.9 MB
ENCFF030DXO.fastq fastq (reads) 1.4 GB
ENCFF041JNG.bigWig bigWig (minus strand signal of unique reads) 68.6 MB
ENCFF053BTB.bigWig bigWig (minus strand signal of all reads) 87.4 MB
ENCFF058VTG.bam bam (alignments) 3.3 GB
ENCFF060TXT.bam bam (alignments) 4.3 GB
ENCFF062SSN.tsv tsv (transcript quantifications) 27.2 MB
ENCFF068MRG.tsv tsv (differential expression quantifications) 2.0 MB
ENCFF077QGG.fastq fastq (reads) 2.7 GB
ENCFF078WQC.bigWig bigWig (plus strand signal of all reads) 58.7 MB
ENCFF085CGH.bigWig bigWig (minus strand signal of unique reads) 73.3 MB
ENCFF088AZS.bam bam (alignments) 2.1 GB
ENCFF133CXE.tsv tsv (differential expression quantifications) 2.8 MB
ENCFF150DQE.bam bam (alignments) 5.2 GB
ENCFF153XWH.bigWig bigWig (plus strand signal of unique reads) 76.4 MB
ENCFF169TYL.bigWig bigWig (minus strand signal of unique reads) 45.8 MB
ENCFF170GXA.bigWig bigWig (minus strand signal of all reads) 79.4 MB
ENCFF172ETL.bigWig bigWig (minus strand signal of unique reads) 52.0 MB
ENCFF182OEX.bigWig bigWig (minus strand signal of unique reads) 49.7 MB
ENCFF187ZFL.bam bam (alignments) 2.5 GB
ENCFF208RIS.bigWig bigWig (minus strand signal of all reads) 75.6 MB
ENCFF216PNJ.bigWig bigWig (plus strand signal of unique reads) 47.1 MB
ENCFF226DPV.bam bam (alignments) 5.2 GB
ENCFF251JHX.bam bam (alignments) 3.3 GB
ENCFF265ESV.fastq fastq (reads) 2.6 GB
ENCFF293UWH.tsv tsv (gene quantifications) 9.1 MB
ENCFF301HPK.bigWig bigWig (minus strand signal of unique reads) 78.7 MB
ENCFF311AHG.bigWig bigWig (minus strand signal of all reads) 78.1 MB
ENCFF341MQW.tar tar (differential splicing quantifications) 3.0 MB
ENCFF344FOD.bigWig bigWig (plus strand signal of unique reads) 75.2 MB
ENCFF345TQR.bam bam (transcriptome alignments) 5.9 GB
ENCFF351CXI.bam bam (alignments) 2.1 GB
ENCFF351IXA.bigWig bigWig (plus strand signal of all reads) 58.2 MB
ENCFF352MNZ.bam bam (alignments) 2.6 GB
ENCFF375ECM.bigWig bigWig (minus strand signal of all reads) 52.1 MB
ENCFF408WYW.bigWig bigWig (plus strand signal of all reads) 81.0 MB
ENCFF418XQS.tsv tsv (gene quantifications) 10.4 MB
ENCFF423FVE.tar tar (differential splicing quantifications) 3.6 MB
ENCFF438ZAE.tsv tsv (transcript quantifications) 27.4 MB
ENCFF449SRE.fastq fastq (reads) 1.3 GB
ENCFF455IND.bigWig bigWig (plus strand signal of unique reads) 80.5 MB
ENCFF457WPR.bigWig bigWig (plus strand signal of all reads) 87.4 MB
ENCFF458NXU.bigWig bigWig (minus strand signal of unique reads) 78.3 MB
ENCFF458WJO.bam bam (transcriptome alignments) 3.3 GB
ENCFF514JQP.tsv tsv (transcript quantifications) 29.8 MB
ENCFF517ARG.bigWig bigWig (plus strand signal of unique reads) 80.1 MB
ENCFF522HWC.bam bam (transcriptome alignments) 5.9 GB
ENCFF530FCR.bigWig bigWig (minus strand signal of unique reads) 52.2 MB
ENCFF545CXX.bam bam (alignments) 4.1 GB
ENCFF550XFB.bigWig bigWig (minus strand signal of all reads) 49.4 MB
ENCFF557GUZ.tsv tsv (gene quantifications) 9.4 MB
ENCFF561PPY.bigWig bigWig (minus strand signal of unique reads) 48.8 MB
ENCFF562XBO.bigWig bigWig (plus strand signal of all reads) 79.6 MB
ENCFF570LDW.bigWig bigWig (plus strand signal of all reads) 77.2 MB
ENCFF574KOP.tsv tsv (differential expression quantifications) 4.1 MB
ENCFF596XGP.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF612XXR.bigWig bigWig (minus strand signal of all reads) 57.5 MB
ENCFF625INJ.bigWig bigWig (plus strand signal of all reads) 58.5 MB
ENCFF632DMU.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF635HDT.bigWig bigWig (plus strand signal of unique reads) 53.2 MB
ENCFF636JMJ.bigWig bigWig (minus strand signal of all reads) 85.9 MB
ENCFF663AYM.tsv tsv (transcript quantifications) 24.9 MB
ENCFF673EWG.tsv tsv (gene quantifications) 10.4 MB
ENCFF674OEF.bigWig bigWig (minus strand signal of all reads) 57.3 MB
ENCFF674UDA.bam bam (alignments) 4.1 GB
ENCFF683BVX.bigWig bigWig (plus strand signal of unique reads) 50.0 MB
ENCFF721PPW.bigWig bigWig (plus strand signal of all reads) 53.0 MB
ENCFF729HTZ.tsv tsv (transcript quantifications) 25.3 MB
ENCFF740IRT.bigWig bigWig (plus strand signal of unique reads) 51.1 MB
ENCFF740WKT.tsv tsv (transcript quantifications) 25.2 MB
ENCFF744VMT.bigWig bigWig (plus strand signal of all reads) 89.1 MB
ENCFF745IXA.bigWig bigWig (plus strand signal of unique reads) 80.9 MB
ENCFF753ALE.tsv tsv (gene quantifications) 9.4 MB
ENCFF773TQM.bigWig bigWig (plus strand signal of all reads) 54.3 MB
ENCFF785FYU.bigWig bigWig (minus strand signal of all reads) 53.2 MB
ENCFF787ZWL.bam bam (transcriptome alignments) 2.9 GB
ENCFF823QSW.bigWig bigWig (plus strand signal of unique reads) 70.6 MB
ENCFF839EZD.bigWig bigWig (minus strand signal of unique reads) 74.3 MB
ENCFF847LJS.bigWig bigWig (minus strand signal of all reads) 57.4 MB
ENCFF875EXE.tsv tsv (transcript quantifications) 24.8 MB
ENCFF875KOM.bam bam (alignments) 4.8 GB
ENCFF880DBG.bigWig bigWig (minus strand signal of all reads) 87.4 MB
ENCFF888SJY.tar tar (differential splicing quantifications) 14.9 MB
ENCFF890FTM.bigWig bigWig (plus strand signal of all reads) 50.4 MB
ENCFF892UBO.bigWig bigWig (minus strand signal of unique reads) 78.0 MB
ENCFF898FYU.bigWig bigWig (plus strand signal of unique reads) 53.5 MB
ENCFF917WOG.tsv tsv (gene quantifications) 9.1 MB
ENCFF939CVM.bam bam (transcriptome alignments) 6.6 GB
ENCFF944JHE.bigWig bigWig (plus strand signal of all reads) 89.1 MB
ENCFF960PFI.bigWig bigWig (plus strand signal of unique reads) 53.4 MB
ENCFF971PRN.tsv tsv (transcript quantifications) 29.7 MB
ENCFF973CWC.bam bam (transcriptome alignments) 2.9 GB
ENCSR898ZCL ENCSR · via encode_api

eCLIP control experiment on K562 against HNRNPA1

Homo sapiens

8 data files
FileTypeSize
ENCFF104FVH.bigWig bigWig (minus strand signal of unique reads) 13.6 MB
ENCFF335HAD.bam bam (alignments) 236.6 MB
ENCFF394YGE.bigWig bigWig (plus strand signal of unique reads) 14.3 MB
ENCFF494XRE.bam bam (alignments) 237.6 MB
ENCFF603XVE.bigWig bigWig (minus strand signal of unique reads) 13.5 MB
ENCFF671JKV.bigWig bigWig (plus strand signal of unique reads) 14.2 MB
ENCFF872NAM.fastq fastq (reads) 424.4 MB
ENCFF895XZY.fastq fastq (reads) 442.7 MB
ENCSR925SYZ ENCSR · via encode_api

RNA-seq on HepG2 cells treated with an shRNA knockdown against BOP1. (BOP1_BGHLV35)

Homo sapiens

92 data files
FileTypeSize
ENCFF035GGT.bigWig bigWig (plus strand signal of unique reads) 69.9 MB
ENCFF070FUX.bigWig bigWig (minus strand signal of all reads) 76.2 MB
ENCFF074XAX.bigWig bigWig (minus strand signal of unique reads) 68.0 MB
ENCFF079IUY.bam bam (alignments) 5.9 GB
ENCFF079UCH.bam bam (alignments) 5.7 GB
ENCFF094VNA.bigWig bigWig (minus strand signal of all reads) 77.0 MB
ENCFF106BAY.bigWig bigWig (minus strand signal of all reads) 77.4 MB
ENCFF110LXA.tsv tsv (gene quantifications) 10.4 MB
ENCFF111DBS.tar tar (differential splicing quantifications) 3.8 MB
ENCFF119XMC.bam bam (transcriptome alignments) 7.4 GB
ENCFF148OMM.bigWig bigWig (minus strand signal of unique reads) 63.0 MB
ENCFF174IZV.bigWig bigWig (minus strand signal of unique reads) 68.9 MB
ENCFF174RXQ.bigWig bigWig (minus strand signal of all reads) 77.5 MB
ENCFF180NOX.bigWig bigWig (plus strand signal of all reads) 69.3 MB
ENCFF206LAK.bigWig bigWig (plus strand signal of unique reads) 62.2 MB
ENCFF206QML.bigWig bigWig (plus strand signal of all reads) 79.0 MB
ENCFF212GIO.bigWig bigWig (minus strand signal of unique reads) 63.8 MB
ENCFF234GDS.bigWig bigWig (plus strand signal of all reads) 79.0 MB
ENCFF236EOU.bigWig bigWig (plus strand signal of unique reads) 70.0 MB
ENCFF239FKN.bam bam (transcriptome alignments) 7.6 GB
ENCFF244VJW.bigWig bigWig (minus strand signal of all reads) 66.4 MB
ENCFF250ATL.bigWig bigWig (plus strand signal of unique reads) 70.1 MB
ENCFF303RGD.tsv tsv (differential expression quantifications) 1.8 MB
ENCFF322RAD.tar tar (differential splicing quantifications) 3.0 MB
ENCFF333RDY.tsv tsv (transcript quantifications) 25.4 MB
ENCFF352HOT.bigWig bigWig (plus strand signal of unique reads) 70.7 MB
ENCFF354XTO.bam bam (transcriptome alignments) 6.5 GB
ENCFF356CUE.bigWig bigWig (minus strand signal of unique reads) 62.9 MB
ENCFF368GJY.bigWig bigWig (plus strand signal of unique reads) 64.5 MB
ENCFF372WWB.tsv tsv (gene quantifications) 9.5 MB
ENCFF380PZQ.bam bam (alignments) 5.5 GB
ENCFF391CEI.fastq fastq (reads) 3.1 GB
ENCFF403UHC.bigWig bigWig (plus strand signal of all reads) 66.9 MB
ENCFF414QAH.bam bam (alignments) 4.6 GB
ENCFF418EAQ.tsv tsv (transcript quantifications) 29.9 MB
ENCFF423DDU.tsv tsv (gene quantifications) 9.1 MB
ENCFF429IQK.bigWig bigWig (minus strand signal of all reads) 65.6 MB
ENCFF444LLX.bam bam (alignments) 4.9 GB
ENCFF448LJN.tsv tsv (differential expression quantifications) 3.0 MB
ENCFF463YRT.bigWig bigWig (minus strand signal of all reads) 67.4 MB
ENCFF472MUX.tsv tsv (differential expression quantifications) 5.5 MB
ENCFF474DSK.bigWig bigWig (minus strand signal of unique reads) 68.9 MB
ENCFF526EJT.bigWig bigWig (plus strand signal of all reads) 67.7 MB
ENCFF530EHU.bam bam (alignments) 5.7 GB
ENCFF541BND.bigWig bigWig (plus strand signal of all reads) 78.2 MB
ENCFF563SYG.bigWig bigWig (minus strand signal of unique reads) 60.5 MB
ENCFF569PKG.tsv tsv (gene quantifications) 9.5 MB
ENCFF570FGE.bam bam (alignments) 5.7 GB
ENCFF584NWE.bigWig bigWig (minus strand signal of unique reads) 60.4 MB
ENCFF603EFJ.bigWig bigWig (minus strand signal of all reads) 65.7 MB
ENCFF603ZWL.bigWig bigWig (plus strand signal of all reads) 77.3 MB
ENCFF623ISQ.fastq fastq (reads) 3.2 GB
ENCFF625YKW.bigWig bigWig (minus strand signal of all reads) 68.0 MB
ENCFF630JND.tsv tsv (gene quantifications) 10.4 MB
ENCFF634SJV.tsv tsv (transcript quantifications) 25.0 MB
ENCFF648AEM.bigWig bigWig (plus strand signal of all reads) 70.6 MB
ENCFF672STG.bigWig bigWig (plus strand signal of unique reads) 64.8 MB
ENCFF676UGO.tsv tsv (gene quantifications) 9.1 MB
ENCFF707XKM.bam bam (alignments) 4.8 GB
ENCFF722HDV.bam bam (alignments) 4.8 GB
ENCFF731UDM.bigWig bigWig (minus strand signal of all reads) 69.2 MB
ENCFF749LAP.fastq fastq (reads) 3.4 GB
ENCFF760NYN.bigWig bigWig (plus strand signal of unique reads) 70.8 MB
ENCFF776ISK.bigWig bigWig (plus strand signal of all reads) 79.0 MB
ENCFF780LNY.tsv tsv (transcript quantifications) 27.4 MB
ENCFF780YKF.bam bam (transcriptome alignments) 6.6 GB
ENCFF783SGK.bigWig bigWig (plus strand signal of unique reads) 65.5 MB
ENCFF789FVL.bam bam (alignments) 4.7 GB
ENCFF801DBP.bigWig bigWig (plus strand signal of all reads) 66.9 MB
ENCFF806BXZ.tar tar (differential splicing quantifications) 14.9 MB
ENCFF822WWH.tsv tsv (differential expression quantifications) 4.4 MB
ENCFF825NBR.bigWig bigWig (minus strand signal of unique reads) 63.1 MB
ENCFF826JNP.bigWig bigWig (plus strand signal of all reads) 78.9 MB
ENCFF827LMX.bigWig bigWig (minus strand signal of all reads) 77.4 MB
ENCFF829HQZ.bigWig bigWig (minus strand signal of unique reads) 68.7 MB
ENCFF849CQD.bigWig bigWig (minus strand signal of all reads) 77.4 MB
ENCFF854EZV.bigWig bigWig (minus strand signal of unique reads) 68.2 MB
ENCFF855LFN.fastq fastq (reads) 3.2 GB
ENCFF856GIJ.tsv tsv (transcript quantifications) 25.0 MB
ENCFF857DQX.tsv tsv (transcript quantifications) 25.4 MB
ENCFF859HYD.bam bam (transcriptome alignments) 6.8 GB
ENCFF861OKZ.bigWig bigWig (plus strand signal of unique reads) 70.8 MB
ENCFF883XHW.bam bam (transcriptome alignments) 6.8 GB
ENCFF904TSM.bigWig bigWig (plus strand signal of unique reads) 64.7 MB
ENCFF911NYK.bam bam (alignments) 5.9 GB
ENCFF929DCF.bigWig bigWig (plus strand signal of all reads) 68.7 MB
ENCFF944RGS.tsv tsv (transcript quantifications) 27.3 MB
ENCFF968IDC.tsv tsv (differential expression quantifications) 2.0 MB
ENCFF990CCJ.bigWig bigWig (minus strand signal of unique reads) 68.1 MB
ENCFF994SUP.bigWig bigWig (plus strand signal of unique reads) 62.0 MB
ENCFF995VLL.tsv tsv (transcript quantifications) 29.9 MB
ENCFF998VON.bam bam (alignments) 4.6 GB
ENCSR254UDV ENCSR · via encode_api

Control ChIP-seq on HepG2

Homo sapiens

14 data files
FileTypeSize
ENCFF083RZJ.bam bam (alignments) 1.4 GB
ENCFF152IKD.bam bam (unfiltered alignments) 1.8 GB
ENCFF218RAX.fastq fastq (reads) 1.4 GB
ENCFF271JZR.bam bam (unfiltered alignments) 2.0 GB
ENCFF326HAL.bam bam (unfiltered alignments) 1.8 GB
ENCFF461RWK.bam bam (unfiltered alignments) 2.0 GB
ENCFF475UDH.bam bam (alignments) 1.6 GB
ENCFF558AOU.bam bam (unfiltered alignments) 2.0 GB
ENCFF568YOD.bam bam (alignments) 1.5 GB
ENCFF736TJP.bam bam (alignments) 1.5 GB
ENCFF743NIF.fastq fastq (reads) 1.3 GB
ENCFF770PNC.bam bam (alignments) 1.5 GB
ENCFF842ALK.bam bam (alignments) 1.4 GB
ENCFF978ZZB.bam bam (unfiltered alignments) 1.8 GB
ENCSR674KDQ ENCSR · via encode_api

RNA-seq on HepG2 cells treated with an shRNA knockdown against GRSF1. (GRSF1-BGHLV22)

Homo sapiens

92 data files
FileTypeSize
ENCFF016WDI.bam bam (alignments) 4.4 GB
ENCFF017PWT.bam bam (alignments) 3.8 GB
ENCFF044ILI.bigWig bigWig (plus strand signal of unique reads) 72.6 MB
ENCFF058DRC.bigWig bigWig (minus strand signal of unique reads) 79.1 MB
ENCFF082AIW.tsv tsv (gene quantifications) 9.4 MB
ENCFF086JLA.bigWig bigWig (minus strand signal of unique reads) 71.4 MB
ENCFF087ZBJ.tsv tsv (gene quantifications) 9.1 MB
ENCFF094FWS.tsv tsv (transcript quantifications) 25.3 MB
ENCFF096XHH.bam bam (transcriptome alignments) 5.3 GB
ENCFF105MFN.bam bam (transcriptome alignments) 5.4 GB
ENCFF116SQL.bigWig bigWig (minus strand signal of all reads) 89.0 MB
ENCFF123LXZ.bigWig bigWig (minus strand signal of all reads) 77.2 MB
ENCFF141IMN.bigWig bigWig (plus strand signal of all reads) 89.6 MB
ENCFF164AGH.tsv tsv (differential expression quantifications) 1.8 MB
ENCFF164XUM.bam bam (alignments) 3.9 GB
ENCFF170TCA.bigWig bigWig (minus strand signal of all reads) 81.4 MB
ENCFF174JOK.bigWig bigWig (minus strand signal of all reads) 84.0 MB
ENCFF200PPB.bigWig bigWig (plus strand signal of all reads) 75.5 MB
ENCFF203JRE.bigWig bigWig (minus strand signal of unique reads) 75.8 MB
ENCFF216DAR.bigWig bigWig (plus strand signal of unique reads) 70.5 MB
ENCFF256UQQ.bam bam (alignments) 4.7 GB
ENCFF260JZM.bam bam (alignments) 3.7 GB
ENCFF268OFE.bigWig bigWig (minus strand signal of unique reads) 69.1 MB
ENCFF271LKQ.bigWig bigWig (minus strand signal of unique reads) 75.1 MB
ENCFF290BXK.tsv tsv (transcript quantifications) 25.3 MB
ENCFF290FQH.tsv tsv (gene quantifications) 9.4 MB
ENCFF301LDX.bigWig bigWig (plus strand signal of unique reads) 76.4 MB
ENCFF308BKA.bigWig bigWig (minus strand signal of unique reads) 80.4 MB
ENCFF312NYQ.tar tar (differential splicing quantifications) 3.7 MB
ENCFF314LZW.tsv tsv (transcript quantifications) 29.8 MB
ENCFF316AXG.tar tar (differential splicing quantifications) 15.4 MB
ENCFF318LTR.bigWig bigWig (plus strand signal of unique reads) 80.4 MB
ENCFF325LZA.bigWig bigWig (plus strand signal of all reads) 89.7 MB
ENCFF330UXF.fastq fastq (reads) 2.3 GB
ENCFF351OMN.tsv tsv (transcript quantifications) 24.9 MB
ENCFF365VVF.bigWig bigWig (plus strand signal of all reads) 78.2 MB
ENCFF412BDX.tsv tsv (differential expression quantifications) 4.3 MB
ENCFF416MPQ.tsv tsv (gene quantifications) 10.4 MB
ENCFF416ONF.tsv tsv (transcript quantifications) 24.9 MB
ENCFF426EMF.bigWig bigWig (minus strand signal of unique reads) 72.4 MB
ENCFF427MWA.bigWig bigWig (minus strand signal of unique reads) 71.5 MB
ENCFF438LVA.bam bam (alignments) 3.8 GB
ENCFF441AXE.tsv tsv (gene quantifications) 9.1 MB
ENCFF441GJJ.bigWig bigWig (minus strand signal of all reads) 88.9 MB
ENCFF447FCC.bigWig bigWig (plus strand signal of all reads) 89.7 MB
ENCFF447PNW.bigWig bigWig (minus strand signal of unique reads) 75.7 MB
ENCFF458UKC.bigWig bigWig (plus strand signal of all reads) 81.6 MB
ENCFF465SEE.bigWig bigWig (minus strand signal of all reads) 80.8 MB
ENCFF483QQU.bigWig bigWig (plus strand signal of unique reads) 76.9 MB
ENCFF500GOX.bigWig bigWig (plus strand signal of unique reads) 73.7 MB
ENCFF506AFF.bam bam (alignments) 4.3 GB
ENCFF513QYU.tsv tsv (transcript quantifications) 27.2 MB
ENCFF520HVS.bigWig bigWig (minus strand signal of all reads) 88.9 MB
ENCFF534EWK.bigWig bigWig (minus strand signal of unique reads) 75.1 MB
ENCFF553JZK.bigWig bigWig (minus strand signal of unique reads) 80.4 MB
ENCFF564AHK.bigWig bigWig (minus strand signal of all reads) 77.3 MB
ENCFF571DLO.bigWig bigWig (plus strand signal of all reads) 77.9 MB
ENCFF586YJC.bigWig bigWig (plus strand signal of all reads) 82.2 MB
ENCFF587FIB.bam bam (alignments) 4.0 GB
ENCFF592JAX.bam bam (transcriptome alignments) 5.4 GB
ENCFF592SOH.bigWig bigWig (minus strand signal of all reads) 76.9 MB
ENCFF597EXU.tsv tsv (transcript quantifications) 29.8 MB
ENCFF608DIG.bigWig bigWig (plus strand signal of all reads) 77.7 MB
ENCFF624RRB.bigWig bigWig (plus strand signal of unique reads) 76.4 MB
ENCFF665AAD.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF675ZXE.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF685WLL.bigWig bigWig (plus strand signal of unique reads) 77.7 MB
ENCFF689WCA.bigWig bigWig (plus strand signal of all reads) 84.9 MB
ENCFF697QSK.fastq fastq (reads) 2.5 GB
ENCFF724BHF.bigWig bigWig (plus strand signal of unique reads) 81.7 MB
ENCFF748VGT.bam bam (alignments) 4.5 GB
ENCFF774DIH.bigWig bigWig (plus strand signal of unique reads) 81.7 MB
ENCFF782MDE.bam bam (alignments) 4.5 GB
ENCFF798XCE.tsv tsv (transcript quantifications) 27.2 MB
ENCFF803NAO.bam bam (transcriptome alignments) 6.0 GB
ENCFF847KCC.bigWig bigWig (plus strand signal of unique reads) 77.2 MB
ENCFF856ONI.bigWig bigWig (plus strand signal of all reads) 84.9 MB
ENCFF863QCU.bigWig bigWig (minus strand signal of all reads) 84.0 MB
ENCFF896PNO.fastq fastq (reads) 2.5 GB
ENCFF899IYL.bigWig bigWig (minus strand signal of unique reads) 76.3 MB
ENCFF907BAK.bam bam (transcriptome alignments) 5.3 GB
ENCFF914HHE.bigWig bigWig (plus strand signal of all reads) 84.3 MB
ENCFF915DCY.bigWig bigWig (minus strand signal of all reads) 83.6 MB
ENCFF935ILJ.bigWig bigWig (plus strand signal of unique reads) 72.9 MB
ENCFF946SKK.tsv tsv (gene quantifications) 10.4 MB
ENCFF962ZNH.fastq fastq (reads) 2.3 GB
ENCFF968MUN.bam bam (alignments) 4.7 GB
ENCFF970QGZ.bam bam (transcriptome alignments) 5.9 GB
ENCFF979FGV.bigWig bigWig (minus strand signal of all reads) 74.5 MB
ENCFF981VGM.tar tar (differential splicing quantifications) 3.2 MB
ENCFF993GPN.bam bam (alignments) 3.7 GB
ENCFF995GOR.tsv tsv (differential expression quantifications) 5.6 MB
ENCSR573UBF ENCSR · via encode_api

shRNA knockdown against TFIP11 in HepG2 cells followed by RNA-seq. (TFIP11_BGHLV17)

Homo sapiens

92 data files
FileTypeSize
ENCFF028ITH.bigWig bigWig (minus strand signal of unique reads) 37.1 MB
ENCFF029HYQ.bam bam (alignments) 2.0 GB
ENCFF044AVC.tsv tsv (transcript quantifications) 24.9 MB
ENCFF045ATR.bigWig bigWig (minus strand signal of unique reads) 69.2 MB
ENCFF104GHQ.bigWig bigWig (plus strand signal of unique reads) 40.1 MB
ENCFF107PQQ.bigWig bigWig (plus strand signal of all reads) 68.6 MB
ENCFF127ACZ.bam bam (transcriptome alignments) 6.1 GB
ENCFF132PEP.bam bam (alignments) 1.7 GB
ENCFF154GDH.bigWig bigWig (minus strand signal of unique reads) 69.6 MB
ENCFF159BKE.bigWig bigWig (minus strand signal of unique reads) 39.2 MB
ENCFF159NRF.bigWig bigWig (plus strand signal of unique reads) 42.8 MB
ENCFF165OQL.bam bam (alignments) 1.7 GB
ENCFF175ADP.bigWig bigWig (plus strand signal of all reads) 47.5 MB
ENCFF183MCH.tsv tsv (gene quantifications) 10.3 MB
ENCFF218RRN.tsv tsv (transcript quantifications) 25.2 MB
ENCFF241RYP.tsv tsv (gene quantifications) 9.1 MB
ENCFF250FLF.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF265URT.bigWig bigWig (plus strand signal of unique reads) 42.6 MB
ENCFF266TRH.tar tar (differential splicing quantifications) 2.9 MB
ENCFF272ZJP.bigWig bigWig (minus strand signal of unique reads) 65.0 MB
ENCFF292SOR.bigWig bigWig (plus strand signal of all reads) 77.3 MB
ENCFF307YVI.tsv tsv (gene quantifications) 9.1 MB
ENCFF314SZT.bigWig bigWig (plus strand signal of unique reads) 71.0 MB
ENCFF319TPH.bam bam (alignments) 1.9 GB
ENCFF322ZAV.tsv tsv (transcript quantifications) 29.8 MB
ENCFF375XID.bigWig bigWig (minus strand signal of all reads) 67.0 MB
ENCFF386HXR.bigWig bigWig (plus strand signal of unique reads) 66.5 MB
ENCFF404OVP.bigWig bigWig (minus strand signal of unique reads) 65.7 MB
ENCFF421LJW.fastq fastq (reads) 2.4 GB
ENCFF430JCR.tsv tsv (differential expression quantifications) 2.8 MB
ENCFF440PZS.bigWig bigWig (plus strand signal of all reads) 69.8 MB
ENCFF445ZEA.bigWig bigWig (plus strand signal of all reads) 40.0 MB
ENCFF462GRC.tsv tsv (transcript quantifications) 25.3 MB
ENCFF467UKX.bigWig bigWig (minus strand signal of all reads) 76.8 MB
ENCFF476KOE.bam bam (alignments) 2.0 GB
ENCFF478DNB.fastq fastq (reads) 2.4 GB
ENCFF512KLH.bam bam (alignments) 4.6 GB
ENCFF517KRO.bigWig bigWig (plus strand signal of all reads) 47.5 MB
ENCFF539MHB.bigWig bigWig (plus strand signal of unique reads) 38.2 MB
ENCFF541UFO.bam bam (transcriptome alignments) 2.4 GB
ENCFF546EYP.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF569VZT.bigWig bigWig (plus strand signal of all reads) 78.2 MB
ENCFF592HOG.bigWig bigWig (minus strand signal of unique reads) 41.8 MB
ENCFF594ZZT.bigWig bigWig (minus strand signal of unique reads) 68.9 MB
ENCFF606HDM.tsv tsv (transcript quantifications) 29.7 MB
ENCFF609QPI.fastq fastq (reads) 1.0 GB
ENCFF619RCA.bigWig bigWig (minus strand signal of all reads) 68.5 MB
ENCFF622TFJ.bigWig bigWig (plus strand signal of unique reads) 67.5 MB
ENCFF623JMK.bigWig bigWig (minus strand signal of all reads) 70.0 MB
ENCFF626LWJ.bigWig bigWig (minus strand signal of unique reads) 42.0 MB
ENCFF630TIH.bigWig bigWig (minus strand signal of all reads) 39.0 MB
ENCFF631WIB.bigWig bigWig (minus strand signal of all reads) 46.5 MB
ENCFF645DSO.bam bam (transcriptome alignments) 2.7 GB
ENCFF646TYQ.bigWig bigWig (minus strand signal of unique reads) 62.8 MB
ENCFF648MSW.bigWig bigWig (plus strand signal of unique reads) 71.5 MB
ENCFF661CHL.tsv tsv (transcript quantifications) 27.3 MB
ENCFF667GIL.tar tar (differential splicing quantifications) 3.5 MB
ENCFF683CRU.bam bam (alignments) 4.3 GB
ENCFF690FDS.bigWig bigWig (plus strand signal of unique reads) 70.7 MB
ENCFF696RXX.bam bam (transcriptome alignments) 5.4 GB
ENCFF699KET.bigWig bigWig (plus strand signal of all reads) 71.4 MB
ENCFF707UQQ.bigWig bigWig (minus strand signal of all reads) 46.5 MB
ENCFF707WMX.bigWig bigWig (minus strand signal of all reads) 76.8 MB
ENCFF716RAA.bam bam (alignments) 3.8 GB
ENCFF735FUQ.bigWig bigWig (minus strand signal of all reads) 45.7 MB
ENCFF737AQR.tsv tsv (gene quantifications) 10.4 MB
ENCFF742ZVC.bigWig bigWig (plus strand signal of unique reads) 43.1 MB
ENCFF746WDG.tar tar (differential splicing quantifications) 13.6 MB
ENCFF760TIW.bigWig bigWig (plus strand signal of all reads) 78.2 MB
ENCFF768OTG.bam bam (alignments) 1.7 GB
ENCFF770FKQ.bam bam (transcriptome alignments) 5.4 GB
ENCFF778ITO.bigWig bigWig (plus strand signal of all reads) 46.5 MB
ENCFF788JGG.bam bam (alignments) 3.7 GB
ENCFF788NIE.bigWig bigWig (plus strand signal of all reads) 43.3 MB
ENCFF793EPJ.tsv tsv (transcript quantifications) 24.8 MB
ENCFF804UJM.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF832IOU.fastq fastq (reads) 1.1 GB
ENCFF832UCW.bigWig bigWig (minus strand signal of unique reads) 41.5 MB
ENCFF833PGL.bam bam (transcriptome alignments) 2.4 GB
ENCFF835LUS.tsv tsv (differential expression quantifications) 4.2 MB
ENCFF836ZHP.bigWig bigWig (minus strand signal of all reads) 76.1 MB
ENCFF845ZII.bam bam (alignments) 4.6 GB
ENCFF852OYW.bigWig bigWig (plus strand signal of all reads) 42.0 MB
ENCFF872WNL.bigWig bigWig (minus strand signal of all reads) 42.4 MB
ENCFF874LMM.bigWig bigWig (plus strand signal of unique reads) 40.7 MB
ENCFF874QCX.bigWig bigWig (minus strand signal of all reads) 41.2 MB
ENCFF879ACX.tsv tsv (transcript quantifications) 27.1 MB
ENCFF882VHI.bigWig bigWig (plus strand signal of unique reads) 64.6 MB
ENCFF947WSS.bam bam (alignments) 3.7 GB
ENCFF953FQX.tsv tsv (gene quantifications) 9.4 MB
ENCFF959LOD.bigWig bigWig (minus strand signal of unique reads) 39.7 MB
ENCFF968RIU.tsv tsv (gene quantifications) 9.4 MB
ENCSR372UWV ENCSR · via encode_api

RNA-seq on HepG2 cells treated with an shRNA knockdown against U2AF1. (U2AF1_BGHLV30)

Homo sapiens

92 data files
FileTypeSize
ENCFF019LJJ.bigWig bigWig (minus strand signal of unique reads) 106.5 MB
ENCFF023UCU.bigWig bigWig (minus strand signal of all reads) 85.0 MB
ENCFF069XKW.tsv tsv (differential expression quantifications) 2.0 MB
ENCFF077ZTV.bigWig bigWig (minus strand signal of unique reads) 78.8 MB
ENCFF081DOB.bigWig bigWig (plus strand signal of unique reads) 108.5 MB
ENCFF082QAZ.tsv tsv (transcript quantifications) 29.9 MB
ENCFF091PKK.bigWig bigWig (plus strand signal of unique reads) 115.5 MB
ENCFF092FSN.bigWig bigWig (minus strand signal of all reads) 82.5 MB
ENCFF092UNB.tsv tsv (transcript quantifications) 25.4 MB
ENCFF104PDU.bigWig bigWig (plus strand signal of unique reads) 77.7 MB
ENCFF122XZV.bigWig bigWig (minus strand signal of all reads) 91.8 MB
ENCFF144ZJU.bam bam (transcriptome alignments) 5.6 GB
ENCFF156WXD.bigWig bigWig (minus strand signal of all reads) 115.1 MB
ENCFF163IXV.bam bam (alignments) 6.9 GB
ENCFF171XGQ.tsv tsv (gene quantifications) 10.4 MB
ENCFF172LGC.bam bam (alignments) 4.2 GB
ENCFF191OYB.bigWig bigWig (plus strand signal of all reads) 93.6 MB
ENCFF212KEA.tar tar (differential splicing quantifications) 6.1 MB
ENCFF214WSE.fastq fastq (reads) 4.2 GB
ENCFF220HAT.bigWig bigWig (minus strand signal of unique reads) 111.6 MB
ENCFF225TXT.bigWig bigWig (minus strand signal of all reads) 91.6 MB
ENCFF228NZG.tsv tsv (gene quantifications) 9.5 MB
ENCFF239KIM.bigWig bigWig (plus strand signal of all reads) 82.7 MB
ENCFF262VTJ.bam bam (alignments) 7.1 GB
ENCFF269FXX.bam bam (alignments) 4.3 GB
ENCFF294GTN.bigWig bigWig (plus strand signal of all reads) 93.5 MB
ENCFF319BSN.bigWig bigWig (minus strand signal of unique reads) 82.2 MB
ENCFF328DUJ.bigWig bigWig (minus strand signal of all reads) 123.5 MB
ENCFF331UNC.bigWig bigWig (minus strand signal of unique reads) 83.1 MB
ENCFF402MMY.bam bam (alignments) 5.6 GB
ENCFF421ZZF.bigWig bigWig (minus strand signal of unique reads) 75.2 MB
ENCFF428YQR.bigWig bigWig (plus strand signal of all reads) 118.0 MB
ENCFF440ZIK.bigWig bigWig (plus strand signal of unique reads) 110.2 MB
ENCFF455UAA.bam bam (transcriptome alignments) 9.3 GB
ENCFF470EQC.bam bam (alignments) 7.1 GB
ENCFF477ZGQ.bam bam (transcriptome alignments) 10.7 GB
ENCFF500PDO.fastq fastq (reads) 2.5 GB
ENCFF511FEQ.bigWig bigWig (minus strand signal of unique reads) 111.7 MB
ENCFF518SUG.bigWig bigWig (minus strand signal of unique reads) 111.8 MB
ENCFF519VIB.bam bam (transcriptome alignments) 5.6 GB
ENCFF525VWL.bigWig bigWig (minus strand signal of unique reads) 82.1 MB
ENCFF560JXF.bam bam (alignments) 3.4 GB
ENCFF563TFW.bigWig bigWig (minus strand signal of all reads) 110.7 MB
ENCFF566PVQ.bigWig bigWig (plus strand signal of unique reads) 115.5 MB
ENCFF581UUT.tar tar (differential splicing quantifications) 4.8 MB
ENCFF593JHK.bigWig bigWig (plus strand signal of all reads) 93.7 MB
ENCFF593QSR.bigWig bigWig (plus strand signal of all reads) 126.2 MB
ENCFF619EMK.bigWig bigWig (plus strand signal of unique reads) 115.5 MB
ENCFF620ZSH.bigWig bigWig (plus strand signal of unique reads) 106.8 MB
ENCFF625SVU.bigWig bigWig (plus strand signal of unique reads) 81.4 MB
ENCFF649BXW.bigWig bigWig (minus strand signal of unique reads) 103.2 MB
ENCFF651UEC.bigWig bigWig (minus strand signal of all reads) 91.6 MB
ENCFF652JUO.tsv tsv (transcript quantifications) 29.8 MB
ENCFF675CQV.bigWig bigWig (minus strand signal of all reads) 123.3 MB
ENCFF687EIB.tsv tsv (gene quantifications) 9.1 MB
ENCFF691DHY.tsv tsv (transcript quantifications) 25.0 MB
ENCFF692WLR.tsv tsv (transcript quantifications) 27.4 MB
ENCFF708KQE.fastq fastq (reads) 2.6 GB
ENCFF723JZD.bam bam (alignments) 4.3 GB
ENCFF727TOD.bigWig bigWig (minus strand signal of unique reads) 78.7 MB
ENCFF740HDF.tsv tsv (transcript quantifications) 24.9 MB
ENCFF743VZI.bam bam (alignments) 5.7 GB
ENCFF756SWY.tsv tsv (differential expression quantifications) 4.4 MB
ENCFF765PZI.bigWig bigWig (plus strand signal of unique reads) 85.7 MB
ENCFF768XFK.bam bam (transcriptome alignments) 6.4 GB
ENCFF788ZPE.bigWig bigWig (plus strand signal of unique reads) 84.8 MB
ENCFF797IMJ.tsv tsv (gene quantifications) 9.1 MB
ENCFF804IFN.tsv tsv (transcript quantifications) 25.3 MB
ENCFF805IYS.bigWig bigWig (minus strand signal of all reads) 123.3 MB
ENCFF811EQV.tsv tsv (transcript quantifications) 27.4 MB
ENCFF811FWH.bam bam (alignments) 3.4 GB
ENCFF811ZTD.bigWig bigWig (plus strand signal of all reads) 126.1 MB
ENCFF814CAP.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF838KLX.bam bam (transcriptome alignments) 9.4 GB
ENCFF857ZGK.bigWig bigWig (plus strand signal of all reads) 114.2 MB
ENCFF859QSJ.bigWig bigWig (plus strand signal of all reads) 84.3 MB
ENCFF866KWR.bigWig bigWig (plus strand signal of unique reads) 81.1 MB
ENCFF866VEA.tsv tsv (gene quantifications) 9.5 MB
ENCFF875ZXL.bigWig bigWig (plus strand signal of all reads) 126.1 MB
ENCFF882SMH.bam bam (alignments) 5.6 GB
ENCFF890TCQ.bigWig bigWig (minus strand signal of all reads) 111.6 MB
ENCFF897FIU.fastq fastq (reads) 4.2 GB
ENCFF898LLF.tsv tsv (differential expression quantifications) 3.0 MB
ENCFF907ILF.bigWig bigWig (plus strand signal of all reads) 113.7 MB
ENCFF915OTQ.bigWig bigWig (plus strand signal of all reads) 87.1 MB
ENCFF918UFK.tar tar (differential splicing quantifications) 15.7 MB
ENCFF960PDG.bam bam (alignments) 3.5 GB
ENCFF964MSA.bigWig bigWig (plus strand signal of unique reads) 84.8 MB
ENCFF974SZY.bigWig bigWig (minus strand signal of all reads) 80.7 MB
ENCFF988PGJ.bigWig bigWig (minus strand signal of unique reads) 105.2 MB
ENCFF998HXO.tsv tsv (gene quantifications) 10.4 MB
ENCFF999IFZ.tsv tsv (differential expression quantifications) 1.8 MB
ENCSR040FSN ENCSR · via encode_api

RNA-seq on K562 cells treated with an shRNA knockdown against EIF4G2. (EIF4G2_BGKLV25)

Homo sapiens

92 data files
FileTypeSize
ENCFF021BLL.bigWig bigWig (plus strand signal of all reads) 138.9 MB
ENCFF024MVY.tsv tsv (differential expression quantifications) 2.0 MB
ENCFF061PVX.bigWig bigWig (plus strand signal of unique reads) 100.2 MB
ENCFF068YCT.bigWig bigWig (minus strand signal of unique reads) 88.1 MB
ENCFF077BDV.bam bam (alignments) 6.8 GB
ENCFF088BEB.bam bam (alignments) 10.0 GB
ENCFF092LHH.bam bam (transcriptome alignments) 11.2 GB
ENCFF094IYP.bigWig bigWig (plus strand signal of all reads) 97.6 MB
ENCFF109MZF.fastq fastq (reads) 5.2 GB
ENCFF111AVY.tsv tsv (transcript quantifications) 24.9 MB
ENCFF122ZDP.tsv tsv (gene quantifications) 10.4 MB
ENCFF131YSX.bigWig bigWig (plus strand signal of all reads) 123.9 MB
ENCFF134ZXS.bigWig bigWig (minus strand signal of unique reads) 90.9 MB
ENCFF158YRT.bigWig bigWig (minus strand signal of unique reads) 97.3 MB
ENCFF159VAV.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF171KEY.bigWig bigWig (plus strand signal of unique reads) 90.5 MB
ENCFF190FLZ.bigWig bigWig (minus strand signal of unique reads) 109.7 MB
ENCFF192PKR.bigWig bigWig (minus strand signal of unique reads) 97.6 MB
ENCFF197AWS.bigWig bigWig (minus strand signal of all reads) 109.9 MB
ENCFF200VRI.tar tar (differential splicing quantifications) 5.2 MB
ENCFF217YTS.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF240PBV.bam bam (alignments) 5.6 GB
ENCFF247JDB.bam bam (transcriptome alignments) 11.3 GB
ENCFF252PKT.bigWig bigWig (minus strand signal of unique reads) 109.1 MB
ENCFF262EET.bigWig bigWig (minus strand signal of unique reads) 110.7 MB
ENCFF266MJQ.bigWig bigWig (minus strand signal of all reads) 95.9 MB
ENCFF290YUU.bigWig bigWig (plus strand signal of all reads) 98.5 MB
ENCFF291UQY.bam bam (transcriptome alignments) 8.7 GB
ENCFF300TFP.bam bam (transcriptome alignments) 7.7 GB
ENCFF301TYY.bigWig bigWig (plus strand signal of unique reads) 100.0 MB
ENCFF302EWL.bigWig bigWig (plus strand signal of unique reads) 92.2 MB
ENCFF303QXT.tar tar (differential splicing quantifications) 6.8 MB
ENCFF305VQB.tsv tsv (transcript quantifications) 27.5 MB
ENCFF311VYO.bam bam (alignments) 6.9 GB
ENCFF316HZA.bigWig bigWig (minus strand signal of unique reads) 120.4 MB
ENCFF328FXB.tar tar (differential splicing quantifications) 18.4 MB
ENCFF343RPU.bigWig bigWig (plus strand signal of unique reads) 122.6 MB
ENCFF348EVP.tsv tsv (gene quantifications) 9.5 MB
ENCFF349HJX.bigWig bigWig (minus strand signal of unique reads) 120.0 MB
ENCFF350SZF.tsv tsv (transcript quantifications) 29.8 MB
ENCFF351EMQ.bigWig bigWig (minus strand signal of all reads) 119.8 MB
ENCFF355PBK.bigWig bigWig (plus strand signal of unique reads) 112.0 MB
ENCFF403JOQ.tsv tsv (transcript quantifications) 27.6 MB
ENCFF436GWY.bigWig bigWig (plus strand signal of all reads) 120.6 MB
ENCFF454ANL.bigWig bigWig (plus strand signal of unique reads) 93.1 MB
ENCFF463YOA.tsv tsv (gene quantifications) 9.5 MB
ENCFF471ABU.bigWig bigWig (plus strand signal of all reads) 99.5 MB
ENCFF496CFF.bigWig bigWig (minus strand signal of all reads) 111.4 MB
ENCFF498DUH.bigWig bigWig (minus strand signal of all reads) 111.4 MB
ENCFF514OIA.bigWig bigWig (plus strand signal of unique reads) 99.5 MB
ENCFF515JNV.bam bam (transcriptome alignments) 12.7 GB
ENCFF529PDO.tsv tsv (gene quantifications) 9.1 MB
ENCFF531CWD.bam bam (alignments) 5.7 GB
ENCFF541POB.bigWig bigWig (minus strand signal of all reads) 122.0 MB
ENCFF555UHC.tsv tsv (differential expression quantifications) 4.5 MB
ENCFF561JOC.bigWig bigWig (plus strand signal of all reads) 136.7 MB
ENCFF565QOT.tsv tsv (transcript quantifications) 29.9 MB
ENCFF567WTH.bigWig bigWig (plus strand signal of unique reads) 123.2 MB
ENCFF582WKL.bam bam (transcriptome alignments) 7.6 GB
ENCFF590HYL.tsv tsv (transcript quantifications) 25.4 MB
ENCFF596KXD.bigWig bigWig (minus strand signal of all reads) 97.9 MB
ENCFF607JQS.bigWig bigWig (plus strand signal of unique reads) 111.9 MB
ENCFF617NHT.bam bam (alignments) 8.2 GB
ENCFF618DCX.tsv tsv (gene quantifications) 9.1 MB
ENCFF663DXU.bigWig bigWig (plus strand signal of all reads) 121.2 MB
ENCFF664ZUO.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF674KBZ.tsv tsv (transcript quantifications) 25.3 MB
ENCFF680ODC.fastq fastq (reads) 3.6 GB
ENCFF702MTO.bigWig bigWig (minus strand signal of unique reads) 119.2 MB
ENCFF715JNT.bigWig bigWig (minus strand signal of all reads) 118.6 MB
ENCFF720TYN.bigWig bigWig (plus strand signal of all reads) 112.7 MB
ENCFF726ITK.bam bam (alignments) 5.6 GB
ENCFF729DOA.bigWig bigWig (minus strand signal of unique reads) 90.4 MB
ENCFF733NHP.tsv tsv (transcript quantifications) 24.9 MB
ENCFF758KCE.bam bam (alignments) 8.3 GB
ENCFF768JLW.bigWig bigWig (plus strand signal of all reads) 111.1 MB
ENCFF771BRA.bigWig bigWig (plus strand signal of all reads) 138.9 MB
ENCFF771VLP.bigWig bigWig (minus strand signal of unique reads) 98.0 MB
ENCFF802QFQ.bam bam (alignments) 8.2 GB
ENCFF835WOD.bam bam (alignments) 6.9 GB
ENCFF837IUI.fastq fastq (reads) 5.3 GB
ENCFF840EOK.fastq fastq (reads) 3.5 GB
ENCFF888UOD.bam bam (alignments) 10.0 GB
ENCFF902HMO.bigWig bigWig (plus strand signal of all reads) 112.7 MB
ENCFF936GPF.bigWig bigWig (plus strand signal of unique reads) 113.3 MB
ENCFF960NRI.bam bam (alignments) 9.9 GB
ENCFF969YKK.bigWig bigWig (minus strand signal of all reads) 97.3 MB
ENCFF974PWU.bigWig bigWig (minus strand signal of all reads) 135.2 MB
ENCFF976NNP.bigWig bigWig (minus strand signal of all reads) 137.4 MB
ENCFF977MDG.bigWig bigWig (minus strand signal of all reads) 137.4 MB
ENCFF978GPX.bigWig bigWig (plus strand signal of unique reads) 121.8 MB
ENCFF998SOM.tsv tsv (gene quantifications) 10.4 MB
ENCSR624OUI ENCSR · via encode_api

RNA-seq on K562 cells treated with an shRNA knockdown against AQR. (AQR_BGKLV38)

Homo sapiens

92 data files
FileTypeSize
ENCFF046XSC.fastq fastq (reads) 4.0 GB
ENCFF048XAO.tar tar (differential splicing quantifications) 17.5 MB
ENCFF059PZO.bigWig bigWig (minus strand signal of all reads) 152.5 MB
ENCFF059YFL.bigWig bigWig (plus strand signal of unique reads) 96.3 MB
ENCFF066NMJ.bigWig bigWig (minus strand signal of all reads) 117.9 MB
ENCFF068FRV.bigWig bigWig (minus strand signal of all reads) 167.6 MB
ENCFF083RUP.bigWig bigWig (minus strand signal of all reads) 149.8 MB
ENCFF126BEM.bam bam (transcriptome alignments) 5.0 GB
ENCFF126DTT.bam bam (alignments) 3.4 GB
ENCFF168XBU.bigWig bigWig (plus strand signal of all reads) 118.2 MB
ENCFF180WYF.bam bam (alignments) 7.7 GB
ENCFF205DDL.bigWig bigWig (minus strand signal of unique reads) 105.5 MB
ENCFF213WMJ.bigWig bigWig (plus strand signal of all reads) 169.3 MB
ENCFF222LBT.bigWig bigWig (plus strand signal of unique reads) 154.3 MB
ENCFF235YZF.bigWig bigWig (minus strand signal of unique reads) 99.7 MB
ENCFF238FEO.tsv tsv (gene quantifications) 10.4 MB
ENCFF239HQR.bigWig bigWig (minus strand signal of all reads) 107.0 MB
ENCFF241GJK.tsv tsv (transcript quantifications) 25.3 MB
ENCFF255AAC.tsv tsv (transcript quantifications) 24.9 MB
ENCFF259UTU.bigWig bigWig (minus strand signal of unique reads) 143.2 MB
ENCFF260ITO.bigWig bigWig (minus strand signal of unique reads) 104.2 MB
ENCFF292XSY.bigWig bigWig (plus strand signal of unique reads) 153.3 MB
ENCFF304XNO.bigWig bigWig (plus strand signal of unique reads) 107.1 MB
ENCFF316OIH.bigWig bigWig (plus strand signal of all reads) 110.1 MB
ENCFF331XCE.tsv tsv (transcript quantifications) 27.6 MB
ENCFF335UHP.bam bam (transcriptome alignments) 4.3 GB
ENCFF362NQX.bigWig bigWig (plus strand signal of unique reads) 102.3 MB
ENCFF372NJI.bam bam (alignments) 6.1 GB
ENCFF392SMI.bam bam (alignments) 7.1 GB
ENCFF395QMQ.bam bam (alignments) 5.8 GB
ENCFF399KUC.tsv tsv (gene quantifications) 9.1 MB
ENCFF401MOM.bigWig bigWig (plus strand signal of all reads) 153.1 MB
ENCFF408IHG.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF423GVU.bigWig bigWig (minus strand signal of unique reads) 104.3 MB
ENCFF434WXS.bigWig bigWig (plus strand signal of all reads) 170.4 MB
ENCFF437DOK.bigWig bigWig (plus strand signal of all reads) 155.1 MB
ENCFF439LSA.bigWig bigWig (plus strand signal of all reads) 104.3 MB
ENCFF451DHO.tsv tsv (transcript quantifications) 25.3 MB
ENCFF456JSP.bigWig bigWig (plus strand signal of unique reads) 102.1 MB
ENCFF460ASV.bam bam (alignments) 5.8 GB
ENCFF465UCM.bam bam (alignments) 4.0 GB
ENCFF479UXA.bam bam (transcriptome alignments) 7.9 GB
ENCFF483VKB.bigWig bigWig (plus strand signal of all reads) 119.9 MB
ENCFF491OVD.tsv tsv (gene quantifications) 9.5 MB
ENCFF507CET.fastq fastq (reads) 4.0 GB
ENCFF511CQD.fastq fastq (reads) 2.2 GB
ENCFF520UAP.bam bam (transcriptome alignments) 9.0 GB
ENCFF531SPT.bam bam (transcriptome alignments) 4.4 GB
ENCFF535HWZ.tsv tsv (transcript quantifications) 29.8 MB
ENCFF547YHA.bigWig bigWig (plus strand signal of all reads) 170.4 MB
ENCFF562IQV.bam bam (alignments) 4.3 GB
ENCFF570FOW.bigWig bigWig (minus strand signal of all reads) 166.3 MB
ENCFF620JGP.tsv tsv (gene quantifications) 10.4 MB
ENCFF621EJK.tsv tsv (differential expression quantifications) 2.0 MB
ENCFF623NQA.bigWig bigWig (minus strand signal of unique reads) 135.7 MB
ENCFF629MXE.tsv tsv (transcript quantifications) 27.5 MB
ENCFF638DFW.bam bam (alignments) 3.3 GB
ENCFF649OAB.bigWig bigWig (minus strand signal of unique reads) 93.4 MB
ENCFF671OWG.bigWig bigWig (plus strand signal of unique reads) 145.7 MB
ENCFF676KPV.bigWig bigWig (minus strand signal of unique reads) 99.3 MB
ENCFF676PVW.fastq fastq (reads) 2.2 GB
ENCFF682TRY.bigWig bigWig (plus strand signal of all reads) 108.8 MB
ENCFF687FXI.bigWig bigWig (minus strand signal of all reads) 107.8 MB
ENCFF690AQT.tsv tsv (gene quantifications) 9.4 MB
ENCFF704PNI.bigWig bigWig (plus strand signal of all reads) 120.0 MB
ENCFF707TCX.bam bam (alignments) 4.3 GB
ENCFF708KOZ.bam bam (alignments) 3.3 GB
ENCFF710UKB.bigWig bigWig (minus strand signal of unique reads) 142.1 MB
ENCFF714KKD.tsv tsv (differential expression quantifications) 5.5 MB
ENCFF714UIW.bam bam (alignments) 7.7 GB
ENCFF715CDT.bigWig bigWig (plus strand signal of all reads) 158.4 MB
ENCFF726FYP.bigWig bigWig (plus strand signal of unique reads) 107.1 MB
ENCFF735UWQ.tsv tsv (transcript quantifications) 24.8 MB
ENCFF737GOB.bigWig bigWig (plus strand signal of unique reads) 139.9 MB
ENCFF760TAH.bigWig bigWig (plus strand signal of unique reads) 147.2 MB
ENCFF766FZQ.bigWig bigWig (minus strand signal of all reads) 167.6 MB
ENCFF792KGN.bigWig bigWig (plus strand signal of unique reads) 152.7 MB
ENCFF802VGG.bigWig bigWig (minus strand signal of unique reads) 148.8 MB
ENCFF811KMO.bigWig bigWig (minus strand signal of all reads) 102.0 MB
ENCFF829UYD.tsv tsv (differential expression quantifications) 3.0 MB
ENCFF858IFK.bigWig bigWig (minus strand signal of all reads) 155.1 MB
ENCFF868HEN.tar tar (differential splicing quantifications) 12.1 MB
ENCFF870XRM.bam bam (transcriptome alignments) 7.8 GB
ENCFF881OPB.tar tar (differential splicing quantifications) 19.4 MB
ENCFF898KQC.tsv tsv (differential expression quantifications) 4.7 MB
ENCFF908UVR.bigWig bigWig (plus strand signal of unique reads) 108.3 MB
ENCFF911VTK.bigWig bigWig (minus strand signal of unique reads) 149.4 MB
ENCFF941PHJ.tsv tsv (transcript quantifications) 29.7 MB
ENCFF953QOK.bigWig bigWig (minus strand signal of all reads) 116.0 MB
ENCFF977DGT.bigWig bigWig (minus strand signal of all reads) 117.8 MB
ENCFF978OIZ.tsv tsv (gene quantifications) 9.1 MB
ENCFF981NIY.bigWig bigWig (minus strand signal of unique reads) 150.2 MB
ENCSR891AXF ENCSR · via encode_api

shRNA knockdown against SSB in K562 cells followed by RNA-seq. (SSB BGKLV13)

Homo sapiens

92 data files
FileTypeSize
ENCFF011MKB.tsv tsv (differential expression quantifications) 4.2 MB
ENCFF024MUG.bigWig bigWig (plus strand signal of unique reads) 84.2 MB
ENCFF051QNU.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF065FUN.bigWig bigWig (plus strand signal of all reads) 85.4 MB
ENCFF073CQS.tsv tsv (gene quantifications) 9.4 MB
ENCFF086SKR.fastq fastq (reads) 2.3 GB
ENCFF106MMK.bam bam (transcriptome alignments) 4.8 GB
ENCFF123APB.tsv tsv (transcript quantifications) 29.8 MB
ENCFF128AKS.bam bam (alignments) 3.5 GB
ENCFF142JDJ.bam bam (transcriptome alignments) 4.7 GB
ENCFF150PMH.bam bam (alignments) 4.1 GB
ENCFF161ENL.tsv tsv (transcript quantifications) 24.9 MB
ENCFF167JVK.tsv tsv (transcript quantifications) 25.3 MB
ENCFF167RFF.tsv tsv (gene quantifications) 9.1 MB
ENCFF173ALX.bigWig bigWig (minus strand signal of unique reads) 81.8 MB
ENCFF177ZGU.bigWig bigWig (minus strand signal of all reads) 86.9 MB
ENCFF182IMH.tsv tsv (gene quantifications) 10.4 MB
ENCFF185GLF.bam bam (alignments) 4.3 GB
ENCFF185XRC.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF188YWH.bigWig bigWig (plus strand signal of unique reads) 79.7 MB
ENCFF205TYT.bigWig bigWig (minus strand signal of unique reads) 77.1 MB
ENCFF216PIB.bigWig bigWig (plus strand signal of all reads) 81.9 MB
ENCFF233POM.bigWig bigWig (minus strand signal of all reads) 93.1 MB
ENCFF244QNI.bigWig bigWig (minus strand signal of unique reads) 73.3 MB
ENCFF251FSO.bigWig bigWig (minus strand signal of all reads) 74.8 MB
ENCFF256NCL.bigWig bigWig (plus strand signal of all reads) 80.3 MB
ENCFF258BVU.bigWig bigWig (plus strand signal of all reads) 87.8 MB
ENCFF274QCR.bigWig bigWig (minus strand signal of all reads) 88.1 MB
ENCFF288KQL.bigWig bigWig (plus strand signal of all reads) 80.9 MB
ENCFF303IIC.bigWig bigWig (minus strand signal of all reads) 88.0 MB
ENCFF306BDH.bigWig bigWig (plus strand signal of all reads) 86.6 MB
ENCFF313MYQ.bigWig bigWig (minus strand signal of all reads) 80.6 MB
ENCFF318BGK.bigWig bigWig (minus strand signal of unique reads) 73.3 MB
ENCFF332OPZ.bam bam (alignments) 4.3 GB
ENCFF339IHT.bam bam (transcriptome alignments) 4.7 GB
ENCFF346VYZ.bigWig bigWig (plus strand signal of all reads) 92.3 MB
ENCFF369QWU.bigWig bigWig (minus strand signal of unique reads) 82.2 MB
ENCFF379YMK.tsv tsv (transcript quantifications) 25.3 MB
ENCFF392XGG.bigWig bigWig (minus strand signal of unique reads) 69.4 MB
ENCFF398QOD.tsv tsv (transcript quantifications) 29.8 MB
ENCFF406LTN.bam bam (alignments) 3.6 GB
ENCFF428VED.bam bam (alignments) 3.5 GB
ENCFF429EJC.bam bam (alignments) 4.3 GB
ENCFF430LBW.tsv tsv (differential expression quantifications) 5.4 MB
ENCFF431JFS.bigWig bigWig (minus strand signal of all reads) 91.3 MB
ENCFF432LCN.bam bam (transcriptome alignments) 5.4 GB
ENCFF433IQG.tar tar (differential splicing quantifications) 3.3 MB
ENCFF446JNP.bigWig bigWig (minus strand signal of unique reads) 76.9 MB
ENCFF453BCZ.tar tar (differential splicing quantifications) 13.6 MB
ENCFF457KYH.bigWig bigWig (minus strand signal of all reads) 84.4 MB
ENCFF461DKO.bigWig bigWig (plus strand signal of unique reads) 74.7 MB
ENCFF490LMK.bam bam (transcriptome alignments) 5.3 GB
ENCFF495PFJ.bigWig bigWig (plus strand signal of unique reads) 71.1 MB
ENCFF497MEM.bigWig bigWig (plus strand signal of unique reads) 78.6 MB
ENCFF512YXR.bigWig bigWig (plus strand signal of all reads) 94.2 MB
ENCFF522SQK.bigWig bigWig (plus strand signal of unique reads) 84.2 MB
ENCFF523GQF.bigWig bigWig (plus strand signal of all reads) 89.0 MB
ENCFF525QZN.bigWig bigWig (minus strand signal of unique reads) 77.8 MB
ENCFF536MSO.bigWig bigWig (minus strand signal of all reads) 93.1 MB
ENCFF563WPH.bigWig bigWig (plus strand signal of unique reads) 75.1 MB
ENCFF566LUR.bigWig bigWig (plus strand signal of all reads) 89.0 MB
ENCFF577LGY.tsv tsv (gene quantifications) 10.4 MB
ENCFF577UDS.tar tar (differential splicing quantifications) 3.7 MB
ENCFF583GTE.bam bam (alignments) 3.6 GB
ENCFF584DRE.tsv tsv (transcript quantifications) 27.3 MB
ENCFF619NQG.bigWig bigWig (minus strand signal of unique reads) 77.7 MB
ENCFF623MUK.bigWig bigWig (minus strand signal of all reads) 79.6 MB
ENCFF629VLO.bam bam (alignments) 4.2 GB
ENCFF642TKW.tsv tsv (gene quantifications) 9.1 MB
ENCFF651GRV.bigWig bigWig (minus strand signal of unique reads) 82.3 MB
ENCFF662AMZ.bigWig bigWig (minus strand signal of all reads) 79.4 MB
ENCFF665FLE.bigWig bigWig (plus strand signal of unique reads) 75.1 MB
ENCFF673CBM.bigWig bigWig (plus strand signal of unique reads) 83.7 MB
ENCFF725QET.fastq fastq (reads) 2.2 GB
ENCFF749HGR.bam bam (alignments) 3.5 GB
ENCFF759NEY.fastq fastq (reads) 2.3 GB
ENCFF771ITZ.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF780GQV.bigWig bigWig (plus strand signal of unique reads) 79.4 MB
ENCFF828UVO.bigWig bigWig (plus strand signal of all reads) 76.0 MB
ENCFF830RAD.bigWig bigWig (plus strand signal of all reads) 94.2 MB
ENCFF838ZCQ.bam bam (transcriptome alignments) 4.8 GB
ENCFF844ZIH.bigWig bigWig (plus strand signal of unique reads) 78.6 MB
ENCFF858ERK.tsv tsv (gene quantifications) 9.4 MB
ENCFF875SEM.bigWig bigWig (minus strand signal of unique reads) 73.4 MB
ENCFF880FWZ.bigWig bigWig (minus strand signal of unique reads) 77.3 MB
ENCFF881NSG.tsv tsv (transcript quantifications) 27.3 MB
ENCFF887KVQ.tsv tsv (transcript quantifications) 24.9 MB
ENCFF895VRY.fastq fastq (reads) 2.2 GB
ENCFF899HDD.bam bam (alignments) 4.3 GB
ENCFF950AAY.bigWig bigWig (plus strand signal of unique reads) 78.9 MB
ENCFF988GGX.bigWig bigWig (minus strand signal of all reads) 85.2 MB
ENCFF997AZD.bam bam (alignments) 3.6 GB
ENCSR744PAQ ENCSR · via encode_api

RNA-seq on HepG2 cells treated with an shRNA knockdown against LARP4. (LARP4_BGHLV20)

Homo sapiens

92 data files
FileTypeSize
ENCFF010CRL.bigWig bigWig (plus strand signal of all reads) 105.4 MB
ENCFF013RCT.bigWig bigWig (plus strand signal of unique reads) 83.2 MB
ENCFF031VQT.tsv tsv (differential expression quantifications) 2.0 MB
ENCFF035VKO.tar tar (differential splicing quantifications) 3.8 MB
ENCFF042RSM.bigWig bigWig (minus strand signal of unique reads) 103.0 MB
ENCFF045DRT.bam bam (alignments) 7.6 GB
ENCFF068GXZ.bigWig bigWig (plus strand signal of unique reads) 106.3 MB
ENCFF074ZRA.bam bam (transcriptome alignments) 8.6 GB
ENCFF085GYY.bigWig bigWig (minus strand signal of all reads) 115.5 MB
ENCFF086CXY.tsv tsv (transcript quantifications) 29.9 MB
ENCFF092JDK.bigWig bigWig (minus strand signal of unique reads) 89.0 MB
ENCFF097FKP.bam bam (alignments) 6.2 GB
ENCFF120UJH.bigWig bigWig (plus strand signal of unique reads) 106.3 MB
ENCFF124KOT.tsv tsv (gene quantifications) 9.1 MB
ENCFF153XMP.bam bam (transcriptome alignments) 8.6 GB
ENCFF161OSV.tsv tsv (gene quantifications) 9.1 MB
ENCFF170OFV.tsv tsv (transcript quantifications) 25.4 MB
ENCFF183BFP.bam bam (alignments) 8.1 GB
ENCFF205LVN.bigWig bigWig (plus strand signal of all reads) 102.4 MB
ENCFF208ZKZ.bigWig bigWig (minus strand signal of all reads) 100.2 MB
ENCFF214DBY.bigWig bigWig (plus strand signal of all reads) 89.6 MB
ENCFF229ODS.bigWig bigWig (minus strand signal of all reads) 117.2 MB
ENCFF237FTU.bigWig bigWig (minus strand signal of all reads) 86.4 MB
ENCFF263ETG.bigWig bigWig (minus strand signal of unique reads) 103.0 MB
ENCFF271LSL.bigWig bigWig (plus strand signal of unique reads) 91.8 MB
ENCFF285JHJ.bigWig bigWig (plus strand signal of all reads) 119.7 MB
ENCFF303WSD.bigWig bigWig (minus strand signal of unique reads) 88.8 MB
ENCFF304UKY.tsv tsv (gene quantifications) 10.4 MB
ENCFF307UDE.bigWig bigWig (plus strand signal of unique reads) 97.2 MB
ENCFF317JBU.bigWig bigWig (minus strand signal of all reads) 100.4 MB
ENCFF322QFC.bigWig bigWig (plus strand signal of all reads) 102.4 MB
ENCFF323ZKA.bam bam (alignments) 9.9 GB
ENCFF336EXL.bigWig bigWig (plus strand signal of unique reads) 81.9 MB
ENCFF337YCS.bigWig bigWig (plus strand signal of all reads) 88.4 MB
ENCFF339ZID.tsv tsv (transcript quantifications) 25.0 MB
ENCFF344WML.bigWig bigWig (minus strand signal of all reads) 100.3 MB
ENCFF348DRB.bam bam (transcriptome alignments) 12.7 GB
ENCFF352VFL.bigWig bigWig (plus strand signal of unique reads) 83.3 MB
ENCFF389SZL.tsv tsv (transcript quantifications) 27.5 MB
ENCFF396KBX.bigWig bigWig (plus strand signal of all reads) 103.0 MB
ENCFF420HXL.bigWig bigWig (minus strand signal of unique reads) 94.4 MB
ENCFF447YIP.bigWig bigWig (plus strand signal of all reads) 102.9 MB
ENCFF461EBA.bam bam (alignments) 8.2 GB
ENCFF464NRR.tsv tsv (transcript quantifications) 25.4 MB
ENCFF500SBL.tar tar (differential splicing quantifications) 18.0 MB
ENCFF525ZWE.bigWig bigWig (minus strand signal of all reads) 100.8 MB
ENCFF527LTE.bigWig bigWig (plus strand signal of unique reads) 95.8 MB
ENCFF548NPK.bigWig bigWig (minus strand signal of all reads) 102.9 MB
ENCFF564SSB.bigWig bigWig (plus strand signal of unique reads) 106.6 MB
ENCFF572LST.bigWig bigWig (minus strand signal of all reads) 87.5 MB
ENCFF574XZS.bam bam (alignments) 6.3 GB
ENCFF576CIQ.bigWig bigWig (plus strand signal of all reads) 100.4 MB
ENCFF581FWL.bigWig bigWig (plus strand signal of unique reads) 91.7 MB
ENCFF583GGM.bam bam (alignments) 6.2 GB
ENCFF597AES.fastq fastq (reads) 5.3 GB
ENCFF604CLV.fastq fastq (reads) 5.4 GB
ENCFF610EVY.bigWig bigWig (minus strand signal of all reads) 85.5 MB
ENCFF618ZCV.tsv tsv (transcript quantifications) 29.9 MB
ENCFF635HXA.bigWig bigWig (plus strand signal of unique reads) 97.4 MB
ENCFF642REU.tsv tsv (transcript quantifications) 25.0 MB
ENCFF678QPW.tsv tsv (differential expression quantifications) 3.0 MB
ENCFF680CEV.bigWig bigWig (plus strand signal of all reads) 119.7 MB
ENCFF680LSQ.bam bam (alignments) 7.6 GB
ENCFF688ZWI.bam bam (transcriptome alignments) 11.2 GB
ENCFF692RAB.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF706OHB.bigWig bigWig (minus strand signal of unique reads) 80.8 MB
ENCFF724XWL.bigWig bigWig (plus strand signal of all reads) 87.7 MB
ENCFF728SSI.bigWig bigWig (minus strand signal of unique reads) 88.9 MB
ENCFF760RVL.bam bam (alignments) 7.4 GB
ENCFF768PKE.bigWig bigWig (minus strand signal of unique reads) 79.1 MB
ENCFF770OCD.bigWig bigWig (minus strand signal of all reads) 117.2 MB
ENCFF786JUH.bigWig bigWig (minus strand signal of unique reads) 94.4 MB
ENCFF790PAT.bam bam (alignments) 8.1 GB
ENCFF813HQD.bigWig bigWig (plus strand signal of all reads) 117.7 MB
ENCFF815ESU.bam bam (alignments) 9.9 GB
ENCFF825VNN.bigWig bigWig (minus strand signal of unique reads) 103.4 MB
ENCFF853RVA.bam bam (transcriptome alignments) 11.3 GB
ENCFF859VWY.bigWig bigWig (plus strand signal of unique reads) 91.6 MB
ENCFF865AYB.bigWig bigWig (minus strand signal of all reads) 98.5 MB
ENCFF879HTK.bigWig bigWig (minus strand signal of unique reads) 92.6 MB
ENCFF880TQE.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF883OKQ.tsv tsv (gene quantifications) 10.4 MB
ENCFF889IEY.tsv tsv (transcript quantifications) 27.5 MB
ENCFF890GSN.bam bam (alignments) 9.6 GB
ENCFF905PJJ.fastq fastq (reads) 4.0 GB
ENCFF913FRM.tsv tsv (gene quantifications) 9.5 MB
ENCFF932QWY.bam bam (transcriptome alignments) 9.7 GB
ENCFF976UWD.tar tar (differential splicing quantifications) 4.8 MB
ENCFF978SQG.tsv tsv (gene quantifications) 9.5 MB
ENCFF980POA.tsv tsv (differential expression quantifications) 4.4 MB
ENCFF989IDZ.bigWig bigWig (minus strand signal of unique reads) 80.6 MB
ENCFF996ORV.fastq fastq (reads) 4.1 GB
ENCSR231DXJ ENCSR · via encode_api

RNA-seq on K562 cells treated with an shRNA knockdown against ATP5C1. (ATP5C1_BGKLV32)

Homo sapiens

92 data files
FileTypeSize
ENCFF010JBJ.bigWig bigWig (minus strand signal of all reads) 111.7 MB
ENCFF013SFL.fastq fastq (reads) 3.5 GB
ENCFF022QPG.bigWig bigWig (plus strand signal of all reads) 102.2 MB
ENCFF029UJP.bigWig bigWig (minus strand signal of all reads) 109.7 MB
ENCFF053WGT.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF060NPO.bigWig bigWig (minus strand signal of unique reads) 89.2 MB
ENCFF061IVZ.tsv tsv (transcript quantifications) 29.9 MB
ENCFF062XZH.bigWig bigWig (minus strand signal of unique reads) 90.7 MB
ENCFF077DOV.bigWig bigWig (plus strand signal of all reads) 102.4 MB
ENCFF086SEW.tsv tsv (transcript quantifications) 25.4 MB
ENCFF094OTT.bigWig bigWig (plus strand signal of unique reads) 92.9 MB
ENCFF095LCW.bam bam (alignments) 6.5 GB
ENCFF116ZHN.tsv tsv (transcript quantifications) 29.9 MB
ENCFF126CJL.bam bam (alignments) 5.4 GB
ENCFF128TFH.bam bam (alignments) 5.5 GB
ENCFF130LBP.bigWig bigWig (minus strand signal of all reads) 99.3 MB
ENCFF148VVV.tsv tsv (transcript quantifications) 24.9 MB
ENCFF174GSV.tsv tsv (gene quantifications) 9.1 MB
ENCFF175JKP.bigWig bigWig (minus strand signal of unique reads) 97.6 MB
ENCFF186KGN.tar tar (differential splicing quantifications) 17.4 MB
ENCFF202MMA.bigWig bigWig (plus strand signal of all reads) 97.8 MB
ENCFF208ITZ.fastq fastq (reads) 3.5 GB
ENCFF209AWQ.bigWig bigWig (minus strand signal of unique reads) 92.7 MB
ENCFF209UHN.bam bam (alignments) 5.4 GB
ENCFF226MCM.tsv tsv (transcript quantifications) 24.9 MB
ENCFF269IOG.bam bam (alignments) 6.8 GB
ENCFF269ZSM.tar tar (differential splicing quantifications) 5.3 MB
ENCFF270DXB.bigWig bigWig (minus strand signal of unique reads) 98.0 MB
ENCFF285RNS.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF339WRT.bam bam (transcriptome alignments) 7.5 GB
ENCFF356GMD.bigWig bigWig (plus strand signal of all reads) 100.9 MB
ENCFF361QBB.bam bam (alignments) 6.3 GB
ENCFF372SRV.bam bam (alignments) 6.5 GB
ENCFF390QIB.bigWig bigWig (minus strand signal of all reads) 96.5 MB
ENCFF412KCY.bigWig bigWig (minus strand signal of unique reads) 100.4 MB
ENCFF435LTN.bigWig bigWig (plus strand signal of unique reads) 100.4 MB
ENCFF437QPX.bigWig bigWig (plus strand signal of unique reads) 89.6 MB
ENCFF463ZYE.bigWig bigWig (minus strand signal of all reads) 95.6 MB
ENCFF483FOU.bam bam (alignments) 6.8 GB
ENCFF497MED.tsv tsv (transcript quantifications) 25.4 MB
ENCFF533YNQ.bam bam (transcriptome alignments) 8.3 GB
ENCFF541KMM.bam bam (transcriptome alignments) 7.6 GB
ENCFF555MMD.bam bam (alignments) 5.2 GB
ENCFF570BZP.bam bam (transcriptome alignments) 7.3 GB
ENCFF574XLH.bigWig bigWig (minus strand signal of unique reads) 91.7 MB
ENCFF579PYQ.bigWig bigWig (plus strand signal of unique reads) 102.0 MB
ENCFF584DOB.bigWig bigWig (plus strand signal of all reads) 114.6 MB
ENCFF587OHC.tsv tsv (gene quantifications) 9.5 MB
ENCFF603XRM.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF611QPI.tsv tsv (transcript quantifications) 27.5 MB
ENCFF616PAK.bigWig bigWig (minus strand signal of all reads) 111.6 MB
ENCFF620JRT.bigWig bigWig (plus strand signal of unique reads) 100.5 MB
ENCFF625QXU.bam bam (alignments) 6.5 GB
ENCFF648OQM.bigWig bigWig (plus strand signal of all reads) 113.4 MB
ENCFF656OEM.bigWig bigWig (plus strand signal of unique reads) 95.2 MB
ENCFF663YFF.bigWig bigWig (plus strand signal of unique reads) 102.9 MB
ENCFF692KEA.bigWig bigWig (minus strand signal of all reads) 100.1 MB
ENCFF703RQT.bigWig bigWig (minus strand signal of all reads) 100.4 MB
ENCFF709RVG.tsv tsv (gene quantifications) 10.4 MB
ENCFF721FEW.fastq fastq (reads) 3.6 GB
ENCFF725AJU.bigWig bigWig (plus strand signal of unique reads) 91.8 MB
ENCFF727WSM.bigWig bigWig (minus strand signal of all reads) 97.2 MB
ENCFF729ICH.bigWig bigWig (plus strand signal of all reads) 114.6 MB
ENCFF730VNQ.bam bam (alignments) 5.3 GB
ENCFF776QDY.tsv tsv (differential expression quantifications) 4.4 MB
ENCFF788BUU.bigWig bigWig (minus strand signal of all reads) 112.4 MB
ENCFF791CJE.tsv tsv (gene quantifications) 9.5 MB
ENCFF793JJJ.bigWig bigWig (minus strand signal of all reads) 112.9 MB
ENCFF807MOS.bigWig bigWig (minus strand signal of unique reads) 99.3 MB
ENCFF809BIR.bigWig bigWig (plus strand signal of all reads) 113.4 MB
ENCFF813GTX.tsv tsv (gene quantifications) 9.1 MB
ENCFF835NUR.bigWig bigWig (plus strand signal of all reads) 98.9 MB
ENCFF839IHZ.tar tar (differential splicing quantifications) 4.1 MB
ENCFF843EQD.bam bam (transcriptome alignments) 8.6 GB
ENCFF847SFF.bigWig bigWig (minus strand signal of unique reads) 97.5 MB
ENCFF864TWD.bigWig bigWig (minus strand signal of unique reads) 92.6 MB
ENCFF871WDM.bam bam (transcriptome alignments) 7.3 GB
ENCFF878XMV.bigWig bigWig (plus strand signal of unique reads) 94.3 MB
ENCFF884CUW.bigWig bigWig (plus strand signal of unique reads) 102.7 MB
ENCFF887QJP.bigWig bigWig (plus strand signal of unique reads) 100.0 MB
ENCFF890FBC.bigWig bigWig (minus strand signal of all reads) 112.9 MB
ENCFF896MFD.bigWig bigWig (plus strand signal of all reads) 111.5 MB
ENCFF912MYI.bam bam (alignments) 5.2 GB
ENCFF913CRN.fastq fastq (reads) 3.6 GB
ENCFF936NRK.tsv tsv (transcript quantifications) 27.5 MB
ENCFF936TJS.bigWig bigWig (minus strand signal of unique reads) 86.8 MB
ENCFF939ZLV.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF943LOD.bigWig bigWig (plus strand signal of all reads) 98.6 MB
ENCFF970BVP.tsv tsv (gene quantifications) 10.4 MB
ENCFF981NUW.bigWig bigWig (minus strand signal of unique reads) 100.2 MB
ENCFF984JOL.bigWig bigWig (plus strand signal of unique reads) 94.9 MB
ENCFF993TZN.bigWig bigWig (plus strand signal of all reads) 114.2 MB
ENCSR118VQR ENCSR · via encode_api

RNA-seq on HepG2 cells treated with an shRNA knockdown against RPS3A. (RPS3A-BGHLV22)

Homo sapiens

92 data files
FileTypeSize
ENCFF002JNG.bigWig bigWig (plus strand signal of all reads) 80.7 MB
ENCFF016AQH.bam bam (transcriptome alignments) 7.3 GB
ENCFF018HOZ.bigWig bigWig (plus strand signal of unique reads) 75.4 MB
ENCFF019BLA.tar tar (differential splicing quantifications) 3.9 MB
ENCFF023TTV.bigWig bigWig (minus strand signal of all reads) 79.5 MB
ENCFF024AWS.bam bam (alignments) 5.3 GB
ENCFF029CJI.bigWig bigWig (plus strand signal of unique reads) 74.3 MB
ENCFF031BSN.bigWig bigWig (plus strand signal of all reads) 81.6 MB
ENCFF035RFO.bigWig bigWig (minus strand signal of all reads) 78.5 MB
ENCFF054JEN.bam bam (alignments) 5.2 GB
ENCFF068QQH.bam bam (transcriptome alignments) 6.5 GB
ENCFF076OFM.tar tar (differential splicing quantifications) 15.6 MB
ENCFF095LCH.bigWig bigWig (plus strand signal of unique reads) 81.4 MB
ENCFF096PPO.bam bam (alignments) 4.4 GB
ENCFF107FQE.bam bam (transcriptome alignments) 6.6 GB
ENCFF112CSQ.bam bam (alignments) 4.5 GB
ENCFF122JVI.bigWig bigWig (plus strand signal of all reads) 79.8 MB
ENCFF122XWQ.bigWig bigWig (minus strand signal of all reads) 88.5 MB
ENCFF124BGM.bigWig bigWig (minus strand signal of unique reads) 79.1 MB
ENCFF128UCS.bigWig bigWig (plus strand signal of unique reads) 80.4 MB
ENCFF133JGR.bigWig bigWig (minus strand signal of all reads) 87.6 MB
ENCFF169WPD.bigWig bigWig (minus strand signal of all reads) 88.6 MB
ENCFF172UUP.tsv tsv (transcript quantifications) 27.3 MB
ENCFF175DDS.bam bam (transcriptome alignments) 7.4 GB
ENCFF181MZG.tsv tsv (differential expression quantifications) 4.4 MB
ENCFF196OEK.fastq fastq (reads) 2.8 GB
ENCFF215UIT.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF232LIG.bigWig bigWig (plus strand signal of unique reads) 76.3 MB
ENCFF237IEI.bigWig bigWig (minus strand signal of all reads) 78.7 MB
ENCFF271YXD.bam bam (alignments) 5.3 GB
ENCFF284GXL.bigWig bigWig (minus strand signal of unique reads) 75.3 MB
ENCFF285LGW.tsv tsv (transcript quantifications) 29.8 MB
ENCFF321EUT.fastq fastq (reads) 2.8 GB
ENCFF328QHL.bigWig bigWig (plus strand signal of all reads) 89.9 MB
ENCFF345HBE.tsv tsv (gene quantifications) 9.4 MB
ENCFF348OQG.bigWig bigWig (plus strand signal of all reads) 89.2 MB
ENCFF362WZI.bigWig bigWig (minus strand signal of unique reads) 73.4 MB
ENCFF372BMO.bigWig bigWig (plus strand signal of all reads) 89.1 MB
ENCFF372IBL.bigWig bigWig (minus strand signal of all reads) 78.1 MB
ENCFF372XKW.bigWig bigWig (plus strand signal of unique reads) 80.1 MB
ENCFF378UYU.tsv tsv (transcript quantifications) 24.9 MB
ENCFF392VDF.bam bam (alignments) 5.1 GB
ENCFF406FCK.bam bam (alignments) 4.5 GB
ENCFF438VIY.tsv tsv (differential expression quantifications) 3.0 MB
ENCFF464DQA.bigWig bigWig (minus strand signal of unique reads) 75.3 MB
ENCFF475EVT.bigWig bigWig (plus strand signal of unique reads) 77.1 MB
ENCFF476FWZ.tsv tsv (gene quantifications) 10.4 MB
ENCFF476ZAC.fastq fastq (reads) 2.9 GB
ENCFF510NQF.bigWig bigWig (plus strand signal of unique reads) 76.3 MB
ENCFF514OOE.tar tar (differential splicing quantifications) 3.2 MB
ENCFF549KQT.bigWig bigWig (minus strand signal of all reads) 88.0 MB
ENCFF556XSN.tsv tsv (differential expression quantifications) 1.8 MB
ENCFF565XPN.fastq fastq (reads) 2.9 GB
ENCFF572USA.bigWig bigWig (plus strand signal of all reads) 89.8 MB
ENCFF572VAC.bam bam (transcriptome alignments) 6.6 GB
ENCFF591SXT.bam bam (transcriptome alignments) 6.6 GB
ENCFF595DZM.bigWig bigWig (minus strand signal of unique reads) 72.5 MB
ENCFF597LPT.bam bam (alignments) 4.4 GB
ENCFF601RCA.bigWig bigWig (minus strand signal of all reads) 86.7 MB
ENCFF614TFV.bigWig bigWig (plus strand signal of unique reads) 76.9 MB
ENCFF642LAH.bigWig bigWig (plus strand signal of unique reads) 80.1 MB
ENCFF647AWY.bigWig bigWig (minus strand signal of unique reads) 79.6 MB
ENCFF661QBA.bigWig bigWig (plus strand signal of unique reads) 80.8 MB
ENCFF672PQD.bigWig bigWig (minus strand signal of unique reads) 74.8 MB
ENCFF695MSQ.bigWig bigWig (minus strand signal of unique reads) 78.6 MB
ENCFF707IZD.tsv tsv (transcript quantifications) 24.9 MB
ENCFF716CNV.bigWig bigWig (minus strand signal of unique reads) 78.4 MB
ENCFF716DDY.bigWig bigWig (plus strand signal of all reads) 83.2 MB
ENCFF736MIA.tsv tsv (gene quantifications) 9.1 MB
ENCFF750RNE.bigWig bigWig (plus strand signal of all reads) 88.7 MB
ENCFF758PTR.bigWig bigWig (minus strand signal of unique reads) 79.7 MB
ENCFF770GYS.bigWig bigWig (plus strand signal of unique reads) 81.4 MB
ENCFF773BIQ.bigWig bigWig (minus strand signal of all reads) 80.4 MB
ENCFF817STB.tsv tsv (gene quantifications) 9.4 MB
ENCFF823JWW.bigWig bigWig (minus strand signal of unique reads) 78.5 MB
ENCFF824GEY.tsv tsv (gene quantifications) 9.1 MB
ENCFF828PLX.bam bam (alignments) 4.5 GB
ENCFF830AFM.bam bam (alignments) 5.3 GB
ENCFF838OUU.bigWig bigWig (plus strand signal of all reads) 87.6 MB
ENCFF838TXH.bigWig bigWig (plus strand signal of all reads) 79.4 MB
ENCFF845TDQ.tsv tsv (transcript quantifications) 25.3 MB
ENCFF856MTX.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF863ZFI.bigWig bigWig (minus strand signal of unique reads) 74.7 MB
ENCFF870XLX.tsv tsv (transcript quantifications) 25.3 MB
ENCFF889WCN.bigWig bigWig (minus strand signal of all reads) 88.0 MB
ENCFF893SZA.bam bam (alignments) 4.6 GB
ENCFF927XIR.bigWig bigWig (plus strand signal of all reads) 80.0 MB
ENCFF932LKA.tsv tsv (transcript quantifications) 27.4 MB
ENCFF948ERS.tsv tsv (transcript quantifications) 29.8 MB
ENCFF953OSW.tsv tsv (gene quantifications) 10.4 MB
ENCFF962QRP.bigWig bigWig (minus strand signal of all reads) 81.8 MB
ENCFF970YIB.bam bam (alignments) 5.3 GB
ENCSR192BPV ENCSR · via encode_api

RNA-seq on K562 cells treated with an shRNA knockdown against SUGP2. (SUGP2_BGKLV28)

Homo sapiens

92 data files
FileTypeSize
ENCFF007VKA.bigWig bigWig (plus strand signal of all reads) 110.1 MB
ENCFF015DJH.bigWig bigWig (minus strand signal of all reads) 105.4 MB
ENCFF030TII.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF031ZKF.tsv tsv (gene quantifications) 10.4 MB
ENCFF040UZQ.tsv tsv (gene quantifications) 9.1 MB
ENCFF047POQ.bigWig bigWig (minus strand signal of all reads) 108.7 MB
ENCFF049HZE.bam bam (alignments) 7.8 GB
ENCFF062TFQ.tsv tsv (gene quantifications) 9.5 MB
ENCFF064QYZ.bigWig bigWig (plus strand signal of all reads) 96.9 MB
ENCFF070TJH.bam bam (alignments) 6.6 GB
ENCFF085HAL.bigWig bigWig (minus strand signal of unique reads) 86.9 MB
ENCFF091XDA.bigWig bigWig (minus strand signal of all reads) 109.4 MB
ENCFF105ZEG.tsv tsv (transcript quantifications) 27.4 MB
ENCFF117UFD.bigWig bigWig (plus strand signal of unique reads) 97.5 MB
ENCFF123LTL.bigWig bigWig (minus strand signal of all reads) 95.0 MB
ENCFF125CPG.tsv tsv (gene quantifications) 10.4 MB
ENCFF129JCQ.bigWig bigWig (plus strand signal of unique reads) 112.7 MB
ENCFF140VCK.bigWig bigWig (plus strand signal of unique reads) 96.4 MB
ENCFF155EDI.bam bam (alignments) 8.0 GB
ENCFF158AIJ.bam bam (alignments) 6.6 GB
ENCFF165SKJ.bigWig bigWig (minus strand signal of unique reads) 95.3 MB
ENCFF167GYS.fastq fastq (reads) 5.0 GB
ENCFF170HHH.tsv tsv (differential expression quantifications) 2.8 MB
ENCFF206RAW.bigWig bigWig (minus strand signal of all reads) 90.4 MB
ENCFF215NCA.bigWig bigWig (minus strand signal of all reads) 108.7 MB
ENCFF253HYQ.tsv tsv (transcript quantifications) 29.9 MB
ENCFF255HKE.bam bam (alignments) 7.8 GB
ENCFF261WMC.bigWig bigWig (plus strand signal of unique reads) 97.8 MB
ENCFF282YMG.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF286KLZ.bam bam (transcriptome alignments) 9.4 GB
ENCFF324HWD.bigWig bigWig (minus strand signal of all reads) 107.3 MB
ENCFF333ZBL.bigWig bigWig (minus strand signal of unique reads) 110.0 MB
ENCFF349XPQ.bigWig bigWig (minus strand signal of unique reads) 93.9 MB
ENCFF406BYU.tsv tsv (gene quantifications) 9.1 MB
ENCFF411HEP.bam bam (transcriptome alignments) 8.4 GB
ENCFF425CJX.tsv tsv (differential expression quantifications) 4.3 MB
ENCFF428WEV.bigWig bigWig (plus strand signal of all reads) 124.6 MB
ENCFF434VFE.bam bam (alignments) 9.5 GB
ENCFF445SYY.bigWig bigWig (plus strand signal of unique reads) 100.9 MB
ENCFF454QTG.bigWig bigWig (plus strand signal of all reads) 107.6 MB
ENCFF468MSZ.bam bam (alignments) 9.5 GB
ENCFF483NVL.fastq fastq (reads) 5.1 GB
ENCFF488KAN.tar tar (differential splicing quantifications) 3.9 MB
ENCFF494YBE.bigWig bigWig (plus strand signal of unique reads) 112.5 MB
ENCFF495KEF.bigWig bigWig (plus strand signal of all reads) 111.6 MB
ENCFF503CYG.bam bam (transcriptome alignments) 10.2 GB
ENCFF511ZEI.bam bam (alignments) 7.7 GB
ENCFF512NNN.bam bam (alignments) 9.2 GB
ENCFF512ZFN.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF517NDY.tsv tsv (gene quantifications) 9.5 MB
ENCFF522SET.tsv tsv (transcript quantifications) 25.0 MB
ENCFF529NIZ.tar tar (differential splicing quantifications) 5.0 MB
ENCFF553YJV.bigWig bigWig (plus strand signal of all reads) 108.5 MB
ENCFF556DFJ.tsv tsv (transcript quantifications) 25.4 MB
ENCFF559XBR.bigWig bigWig (plus strand signal of unique reads) 98.8 MB
ENCFF564LVQ.bigWig bigWig (minus strand signal of all reads) 92.1 MB
ENCFF589SEQ.bigWig bigWig (minus strand signal of unique reads) 98.6 MB
ENCFF590OGG.fastq fastq (reads) 4.3 GB
ENCFF591MHE.bam bam (transcriptome alignments) 10.1 GB
ENCFF594YYG.bigWig bigWig (minus strand signal of unique reads) 109.8 MB
ENCFF605VCQ.bam bam (alignments) 6.5 GB
ENCFF605WBA.bigWig bigWig (plus strand signal of unique reads) 85.2 MB
ENCFF608WXH.bigWig bigWig (plus strand signal of all reads) 93.4 MB
ENCFF612CGF.bigWig bigWig (plus strand signal of all reads) 108.8 MB
ENCFF620MTJ.bigWig bigWig (minus strand signal of unique reads) 108.6 MB
ENCFF626PGB.bigWig bigWig (minus strand signal of unique reads) 82.8 MB
ENCFF642CSY.bigWig bigWig (minus strand signal of all reads) 124.3 MB
ENCFF666LSA.bigWig bigWig (plus strand signal of all reads) 92.5 MB
ENCFF689JZV.tsv tsv (transcript quantifications) 25.0 MB
ENCFF692MSF.tsv tsv (transcript quantifications) 29.9 MB
ENCFF706TIK.bam bam (alignments) 8.0 GB
ENCFF788KCT.tsv tsv (transcript quantifications) 27.4 MB
ENCFF788PJE.bigWig bigWig (plus strand signal of unique reads) 102.9 MB
ENCFF809YHY.bigWig bigWig (plus strand signal of all reads) 126.0 MB
ENCFF810LQI.bigWig bigWig (plus strand signal of unique reads) 88.3 MB
ENCFF810YYY.bigWig bigWig (minus strand signal of unique reads) 95.6 MB
ENCFF816MME.tsv tsv (transcript quantifications) 25.4 MB
ENCFF820TCZ.bam bam (transcriptome alignments) 8.3 GB
ENCFF825VTB.bam bam (alignments) 7.7 GB
ENCFF828ASE.bigWig bigWig (minus strand signal of unique reads) 95.9 MB
ENCFF837PPN.bigWig bigWig (plus strand signal of all reads) 110.1 MB
ENCFF838WCS.bigWig bigWig (minus strand signal of unique reads) 86.4 MB
ENCFF848WXI.bigWig bigWig (minus strand signal of all reads) 124.3 MB
ENCFF873RQI.tar tar (differential splicing quantifications) 16.5 MB
ENCFF878MQG.bigWig bigWig (plus strand signal of unique reads) 89.2 MB
ENCFF879ZCT.bigWig bigWig (plus strand signal of all reads) 126.0 MB
ENCFF893CWY.fastq fastq (reads) 4.3 GB
ENCFF947XNY.bam bam (transcriptome alignments) 11.4 GB
ENCFF950CYL.bigWig bigWig (minus strand signal of all reads) 122.8 MB
ENCFF959SUA.bigWig bigWig (minus strand signal of unique reads) 100.2 MB
ENCFF970IGJ.bigWig bigWig (plus strand signal of unique reads) 111.5 MB
ENCFF998VTT.bigWig bigWig (minus strand signal of all reads) 106.9 MB
ENCSR016XPB ENCSR · via encode_api

RNA-seq on HepG2 cells treated with an shRNA knockdown against NPM1. (NPM1_BGHLV26)

Homo sapiens

92 data files
FileTypeSize
ENCFF037BRV.bigWig bigWig (minus strand signal of unique reads) 67.1 MB
ENCFF053XSI.bam bam (transcriptome alignments) 7.2 GB
ENCFF061MBO.bigWig bigWig (minus strand signal of all reads) 74.7 MB
ENCFF081JHI.bam bam (alignments) 5.5 GB
ENCFF089HOX.bigWig bigWig (minus strand signal of all reads) 65.1 MB
ENCFF123OUS.tsv tsv (gene quantifications) 9.5 MB
ENCFF189DSK.bam bam (transcriptome alignments) 9.8 GB
ENCFF198CJV.bigWig bigWig (plus strand signal of all reads) 76.7 MB
ENCFF210LCJ.tar tar (differential splicing quantifications) 14.9 MB
ENCFF216GYO.bigWig bigWig (minus strand signal of all reads) 67.0 MB
ENCFF220TLU.fastq fastq (reads) 4.5 GB
ENCFF225TSM.bigWig bigWig (plus strand signal of unique reads) 86.0 MB
ENCFF242AWI.bigWig bigWig (plus strand signal of all reads) 95.7 MB
ENCFF242UMY.tsv tsv (transcript quantifications) 29.9 MB
ENCFF252FRQ.bigWig bigWig (minus strand signal of all reads) 93.9 MB
ENCFF253GVY.tsv tsv (transcript quantifications) 27.4 MB
ENCFF260WTR.bam bam (alignments) 4.5 GB
ENCFF264KBJ.bigWig bigWig (minus strand signal of all reads) 83.3 MB
ENCFF272EWW.tsv tsv (transcript quantifications) 25.0 MB
ENCFF282RTE.bam bam (alignments) 6.1 GB
ENCFF304RNE.bam bam (transcriptome alignments) 8.2 GB
ENCFF310BZX.bam bam (alignments) 5.5 GB
ENCFF340NFN.bigWig bigWig (minus strand signal of all reads) 92.7 MB
ENCFF350CEQ.fastq fastq (reads) 4.5 GB
ENCFF358KMD.bigWig bigWig (minus strand signal of unique reads) 76.2 MB
ENCFF363NWQ.bigWig bigWig (plus strand signal of all reads) 86.7 MB
ENCFF369DAH.bigWig bigWig (minus strand signal of unique reads) 60.4 MB
ENCFF373WYF.bam bam (alignments) 7.3 GB
ENCFF378MWU.bigWig bigWig (minus strand signal of unique reads) 83.7 MB
ENCFF441HAO.bigWig bigWig (minus strand signal of unique reads) 67.0 MB
ENCFF459PJO.bigWig bigWig (plus strand signal of all reads) 94.4 MB
ENCFF462ZZG.bigWig bigWig (minus strand signal of unique reads) 78.7 MB
ENCFF465VBB.bigWig bigWig (minus strand signal of unique reads) 77.7 MB
ENCFF472LPH.bam bam (alignments) 6.1 GB
ENCFF478YOU.tsv tsv (gene quantifications) 10.4 MB
ENCFF489FOV.tsv tsv (differential expression quantifications) 1.8 MB
ENCFF494DWH.bigWig bigWig (minus strand signal of unique reads) 83.6 MB
ENCFF496VXL.bigWig bigWig (plus strand signal of unique reads) 86.0 MB
ENCFF512MCS.bigWig bigWig (minus strand signal of all reads) 93.9 MB
ENCFF528KXL.bigWig bigWig (plus strand signal of unique reads) 63.9 MB
ENCFF561VWQ.bigWig bigWig (plus strand signal of unique reads) 80.8 MB
ENCFF563ANB.bigWig bigWig (plus strand signal of all reads) 66.5 MB
ENCFF565HLA.tsv tsv (gene quantifications) 10.4 MB
ENCFF577KXL.bam bam (transcriptome alignments) 9.8 GB
ENCFF578VNM.bigWig bigWig (plus strand signal of unique reads) 78.5 MB
ENCFF579PMC.tsv tsv (transcript quantifications) 27.3 MB
ENCFF579YKC.bigWig bigWig (minus strand signal of unique reads) 83.6 MB
ENCFF584ZRX.tsv tsv (transcript quantifications) 25.0 MB
ENCFF590AIM.bam bam (alignments) 4.5 GB
ENCFF598YSO.bigWig bigWig (minus strand signal of all reads) 85.0 MB
ENCFF605BHG.bam bam (transcriptome alignments) 7.1 GB
ENCFF611VIS.tsv tsv (transcript quantifications) 30.0 MB
ENCFF613OQJ.bigWig bigWig (minus strand signal of all reads) 82.3 MB
ENCFF624ZCX.bigWig bigWig (minus strand signal of all reads) 75.3 MB
ENCFF628XSC.tar tar (differential splicing quantifications) 3.4 MB
ENCFF632QPX.bigWig bigWig (plus strand signal of unique reads) 63.9 MB
ENCFF643CNE.tsv tsv (transcript quantifications) 25.4 MB
ENCFF646OSE.tsv tsv (transcript quantifications) 25.4 MB
ENCFF664HNY.bigWig bigWig (plus strand signal of unique reads) 79.8 MB
ENCFF690PMZ.bigWig bigWig (plus strand signal of unique reads) 68.7 MB
ENCFF698DFA.bam bam (alignments) 6.1 GB
ENCFF705ZSK.tsv tsv (gene quantifications) 9.1 MB
ENCFF714AKO.bam bam (transcriptome alignments) 11.2 GB
ENCFF729KXY.bigWig bigWig (plus strand signal of unique reads) 62.1 MB
ENCFF731QCQ.bam bam (alignments) 5.4 GB
ENCFF735DZQ.bigWig bigWig (plus strand signal of all reads) 84.1 MB
ENCFF738DNW.bigWig bigWig (plus strand signal of all reads) 95.7 MB
ENCFF744RQX.fastq fastq (reads) 3.3 GB
ENCFF764HJD.fastq fastq (reads) 3.3 GB
ENCFF777LLB.bigWig bigWig (plus strand signal of unique reads) 68.9 MB
ENCFF802CGL.bigWig bigWig (minus strand signal of all reads) 75.3 MB
ENCFF802XYB.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF817VKE.bigWig bigWig (minus strand signal of unique reads) 62.3 MB
ENCFF821NWD.tsv tsv (differential expression quantifications) 2.0 MB
ENCFF833EAN.bigWig bigWig (plus strand signal of unique reads) 68.8 MB
ENCFF839CBH.tsv tsv (differential expression quantifications) 5.5 MB
ENCFF840YCZ.tsv tsv (gene quantifications) 9.1 MB
ENCFF863DKB.bam bam (alignments) 4.5 GB
ENCFF864KDH.bigWig bigWig (minus strand signal of unique reads) 62.3 MB
ENCFF876SXY.bigWig bigWig (plus strand signal of all reads) 75.9 MB
ENCFF878LIY.bigWig bigWig (plus strand signal of unique reads) 86.0 MB
ENCFF907TAU.tar tar (differential splicing quantifications) 2.9 MB
ENCFF908SYB.bigWig bigWig (plus strand signal of all reads) 69.1 MB
ENCFF921LIZ.bigWig bigWig (minus strand signal of unique reads) 67.0 MB
ENCFF923WFW.bigWig bigWig (plus strand signal of all reads) 84.9 MB
ENCFF941ZDJ.bigWig bigWig (plus strand signal of all reads) 68.2 MB
ENCFF957YBS.tsv tsv (differential expression quantifications) 4.1 MB
ENCFF967DIN.bigWig bigWig (plus strand signal of all reads) 76.7 MB
ENCFF984NLQ.bam bam (alignments) 7.4 GB
ENCFF990AUL.tsv tsv (gene quantifications) 9.5 MB
ENCFF995GAQ.bigWig bigWig (minus strand signal of all reads) 67.8 MB
ENCFF997NRL.bam bam (alignments) 7.4 GB
ENCSR385KOY ENCSR · via encode_api

shRNA knockdown against DNAJC21 in HepG2 cells followed by RNA-seq. (DNAJC21-46-BGHLV20)

Homo sapiens

92 data files
FileTypeSize
ENCFF011VTZ.bigWig bigWig (plus strand signal of unique reads) 61.6 MB
ENCFF013LUC.tsv tsv (gene quantifications) 9.4 MB
ENCFF032PGW.bigWig bigWig (plus strand signal of all reads) 67.9 MB
ENCFF037ZJS.bigWig bigWig (plus strand signal of unique reads) 61.1 MB
ENCFF043NRL.bigWig bigWig (minus strand signal of all reads) 67.5 MB
ENCFF064JCX.bigWig bigWig (minus strand signal of unique reads) 54.6 MB
ENCFF066SNF.bigWig bigWig (minus strand signal of all reads) 57.8 MB
ENCFF073PXD.bigWig bigWig (plus strand signal of unique reads) 58.1 MB
ENCFF100NZS.bam bam (transcriptome alignments) 4.7 GB
ENCFF136ZHY.bam bam (alignments) 4.2 GB
ENCFF153SSN.tsv tsv (transcript quantifications) 24.9 MB
ENCFF156AAG.bigWig bigWig (plus strand signal of all reads) 68.8 MB
ENCFF160CKS.tsv tsv (gene quantifications) 9.1 MB
ENCFF162YZK.bam bam (alignments) 3.3 GB
ENCFF168QYA.bam bam (alignments) 4.1 GB
ENCFF177TQE.bigWig bigWig (plus strand signal of all reads) 68.8 MB
ENCFF183PZO.bigWig bigWig (minus strand signal of all reads) 66.7 MB
ENCFF234KAR.bam bam (alignments) 4.0 GB
ENCFF246NXD.bigWig bigWig (plus strand signal of unique reads) 54.2 MB
ENCFF268LME.fastq fastq (reads) 2.1 GB
ENCFF273PII.bigWig bigWig (plus strand signal of all reads) 68.8 MB
ENCFF285ELE.bam bam (alignments) 4.2 GB
ENCFF288LJS.tsv tsv (gene quantifications) 10.4 MB
ENCFF298HUY.tar tar (differential splicing quantifications) 2.8 MB
ENCFF299HQA.tsv tsv (transcript quantifications) 27.3 MB
ENCFF307IXW.fastq fastq (reads) 2.3 GB
ENCFF315SSF.bigWig bigWig (plus strand signal of unique reads) 55.8 MB
ENCFF342QUR.bigWig bigWig (plus strand signal of all reads) 67.2 MB
ENCFF348XUC.bigWig bigWig (plus strand signal of all reads) 61.6 MB
ENCFF360WAQ.bam bam (transcriptome alignments) 5.1 GB
ENCFF367YMV.bigWig bigWig (minus strand signal of unique reads) 60.0 MB
ENCFF370AXI.bigWig bigWig (plus strand signal of all reads) 60.7 MB
ENCFF372DJU.bigWig bigWig (minus strand signal of all reads) 67.5 MB
ENCFF372PXX.bigWig bigWig (plus strand signal of unique reads) 57.6 MB
ENCFF399PPE.fastq fastq (reads) 2.0 GB
ENCFF399TVD.bam bam (alignments) 4.0 GB
ENCFF409QEI.bam bam (transcriptome alignments) 4.6 GB
ENCFF429FUO.bigWig bigWig (minus strand signal of unique reads) 56.2 MB
ENCFF437RUG.bigWig bigWig (minus strand signal of unique reads) 61.3 MB
ENCFF443ALG.tsv tsv (gene quantifications) 10.4 MB
ENCFF447FUH.bigWig bigWig (plus strand signal of unique reads) 61.6 MB
ENCFF448DUC.tsv tsv (transcript quantifications) 25.3 MB
ENCFF473KSP.bam bam (alignments) 3.5 GB
ENCFF473NWI.bigWig bigWig (minus strand signal of all reads) 59.1 MB
ENCFF490YRB.bigWig bigWig (minus strand signal of all reads) 58.3 MB
ENCFF495LBM.bigWig bigWig (minus strand signal of all reads) 67.5 MB
ENCFF508JDL.tar tar (differential splicing quantifications) 3.3 MB
ENCFF512RNU.bigWig bigWig (minus strand signal of all reads) 60.4 MB
ENCFF526RNH.bigWig bigWig (plus strand signal of unique reads) 63.0 MB
ENCFF531GWL.bam bam (alignments) 3.3 GB
ENCFF539TBE.tsv tsv (gene quantifications) 9.1 MB
ENCFF552JOH.bigWig bigWig (plus strand signal of all reads) 57.1 MB
ENCFF558VOI.bigWig bigWig (minus strand signal of all reads) 59.6 MB
ENCFF570TYV.bigWig bigWig (minus strand signal of unique reads) 54.4 MB
ENCFF585BTA.tsv tsv (transcript quantifications) 27.3 MB
ENCFF591FWF.bigWig bigWig (plus strand signal of all reads) 67.9 MB
ENCFF602GDR.bigWig bigWig (plus strand signal of unique reads) 62.4 MB
ENCFF623VRR.tsv tsv (transcript quantifications) 25.3 MB
ENCFF648TIJ.bigWig bigWig (minus strand signal of all reads) 66.7 MB
ENCFF652GKZ.tsv tsv (transcript quantifications) 24.9 MB
ENCFF663FAG.bigWig bigWig (plus strand signal of unique reads) 55.2 MB
ENCFF698MTR.bam bam (alignments) 3.5 GB
ENCFF707PCU.bigWig bigWig (minus strand signal of all reads) 55.8 MB
ENCFF718MTI.bigWig bigWig (minus strand signal of unique reads) 60.0 MB
ENCFF731BZE.tsv tsv (differential expression quantifications) 4.3 MB
ENCFF732YKQ.bigWig bigWig (minus strand signal of unique reads) 60.7 MB
ENCFF734DFZ.bigWig bigWig (minus strand signal of unique reads) 53.5 MB
ENCFF740QWY.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF753CIE.bam bam (alignments) 3.4 GB
ENCFF753FBM.bigWig bigWig (minus strand signal of unique reads) 60.9 MB
ENCFF757BMF.bigWig bigWig (minus strand signal of unique reads) 59.5 MB
ENCFF774UTH.tsv tsv (gene quantifications) 9.4 MB
ENCFF780TIJ.tar tar (differential splicing quantifications) 14.7 MB
ENCFF784CDZ.bigWig bigWig (minus strand signal of unique reads) 56.5 MB
ENCFF800UAQ.bigWig bigWig (plus strand signal of unique reads) 56.1 MB
ENCFF829TVJ.tsv tsv (differential expression quantifications) 5.7 MB
ENCFF839BUY.bam bam (transcriptome alignments) 5.5 GB
ENCFF878OOI.tsv tsv (transcript quantifications) 29.8 MB
ENCFF878SDU.bigWig bigWig (plus strand signal of unique reads) 62.5 MB
ENCFF883OJW.bigWig bigWig (minus strand signal of all reads) 66.0 MB
ENCFF888SXP.tsv tsv (transcript quantifications) 29.8 MB
ENCFF893BMK.bigWig bigWig (plus strand signal of all reads) 59.2 MB
ENCFF895TLK.bigWig bigWig (plus strand signal of all reads) 59.4 MB
ENCFF915GZY.bam bam (transcriptome alignments) 5.0 GB
ENCFF915KUJ.bigWig bigWig (minus strand signal of unique reads) 52.6 MB
ENCFF923VOC.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF950XJP.bam bam (alignments) 3.6 GB
ENCFF964CVW.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF964VES.bigWig bigWig (plus strand signal of all reads) 60.4 MB
ENCFF998CGM.fastq fastq (reads) 2.2 GB
ENCFF998GSC.bam bam (transcriptome alignments) 4.9 GB
ENCFF998JKT.bam bam (alignments) 3.9 GB
ENCSR245BNJ ENCSR · via encode_api

Control shRNA against no target in K562 cells followed by RNA-seq. (NT_BGKLV19-A)

Homo sapiens

84 data files
FileTypeSize
ENCFF027TOH.bigWig bigWig (plus strand signal of all reads) 87.0 MB
ENCFF052NKV.bigWig bigWig (minus strand signal of all reads) 84.5 MB
ENCFF064AYS.fastq fastq (reads) 2.4 GB
ENCFF087MYH.tsv tsv (transcript quantifications) 25.3 MB
ENCFF105DOQ.tsv tsv (transcript quantifications) 29.8 MB
ENCFF117OHW.tsv tsv (transcript quantifications) 24.9 MB
ENCFF127VWN.bigWig bigWig (plus strand signal of all reads) 67.5 MB
ENCFF130EVH.bigWig bigWig (plus strand signal of all reads) 78.7 MB
ENCFF138BXV.bam bam (transcriptome alignments) 5.9 GB
ENCFF147HRG.bigWig bigWig (plus strand signal of unique reads) 77.7 MB
ENCFF155KOC.bigWig bigWig (minus strand signal of all reads) 70.7 MB
ENCFF159HVD.bigWig bigWig (minus strand signal of all reads) 86.1 MB
ENCFF169NSV.bigWig bigWig (plus strand signal of unique reads) 77.1 MB
ENCFF181JCN.bigWig bigWig (plus strand signal of unique reads) 67.6 MB
ENCFF190UJU.bam bam (alignments) 4.3 GB
ENCFF214VCT.bigWig bigWig (minus strand signal of unique reads) 76.0 MB
ENCFF217RGO.bigWig bigWig (minus strand signal of all reads) 78.4 MB
ENCFF218DSS.bigWig bigWig (minus strand signal of unique reads) 65.6 MB
ENCFF230GCX.bigWig bigWig (minus strand signal of all reads) 77.9 MB
ENCFF233QSF.bam bam (alignments) 3.0 GB
ENCFF243ICF.tsv tsv (gene quantifications) 9.1 MB
ENCFF270WCT.bigWig bigWig (minus strand signal of unique reads) 75.3 MB
ENCFF272UHX.bigWig bigWig (plus strand signal of unique reads) 71.3 MB
ENCFF288XCG.bigWig bigWig (plus strand signal of unique reads) 67.1 MB
ENCFF292ZCS.bigWig bigWig (minus strand signal of all reads) 66.2 MB
ENCFF296WVQ.bam bam (transcriptome alignments) 5.2 GB
ENCFF308ITK.bigWig bigWig (plus strand signal of unique reads) 70.8 MB
ENCFF312EMW.fastq fastq (reads) 2.3 GB
ENCFF312HLL.bam bam (alignments) 3.7 GB
ENCFF330HOS.bigWig bigWig (minus strand signal of unique reads) 72.2 MB
ENCFF357GUQ.bam bam (alignments) 4.5 GB
ENCFF362BHT.bigWig bigWig (plus strand signal of unique reads) 72.6 MB
ENCFF377MFT.bigWig bigWig (minus strand signal of unique reads) 69.1 MB
ENCFF381OZI.bigWig bigWig (minus strand signal of all reads) 77.8 MB
ENCFF389DAB.bigWig bigWig (plus strand signal of all reads) 78.9 MB
ENCFF394CBR.bigWig bigWig (plus strand signal of all reads) 76.3 MB
ENCFF400ALT.bigWig bigWig (plus strand signal of all reads) 85.5 MB
ENCFF407SGW.bigWig bigWig (plus strand signal of all reads) 79.7 MB
ENCFF411KCO.bigWig bigWig (minus strand signal of unique reads) 61.4 MB
ENCFF425TVF.tsv tsv (gene quantifications) 9.4 MB
ENCFF430OXO.bigWig bigWig (plus strand signal of all reads) 87.0 MB
ENCFF444TRJ.bigWig bigWig (minus strand signal of unique reads) 65.9 MB
ENCFF446WUZ.tsv tsv (gene quantifications) 10.4 MB
ENCFF450FYO.bigWig bigWig (plus strand signal of all reads) 71.6 MB
ENCFF461RXD.bigWig bigWig (plus strand signal of all reads) 78.8 MB
ENCFF485AZD.bigWig bigWig (minus strand signal of unique reads) 69.5 MB
ENCFF507BXE.bam bam (alignments) 3.6 GB
ENCFF531IMH.bam bam (alignments) 3.5 GB
ENCFF539XVI.bigWig bigWig (plus strand signal of unique reads) 63.2 MB
ENCFF542VSZ.bigWig bigWig (minus strand signal of unique reads) 71.2 MB
ENCFF551UKL.fastq fastq (reads) 1.9 GB
ENCFF564BEJ.bam bam (transcriptome alignments) 4.0 GB
ENCFF567GIU.bigWig bigWig (plus strand signal of all reads) 78.3 MB
ENCFF584WAF.bam bam (alignments) 3.7 GB
ENCFF623TNJ.bigWig bigWig (plus strand signal of unique reads) 77.6 MB
ENCFF626DCW.bam bam (transcriptome alignments) 5.3 GB
ENCFF628FHM.bigWig bigWig (plus strand signal of all reads) 72.3 MB
ENCFF636FGP.bigWig bigWig (minus strand signal of unique reads) 69.6 MB
ENCFF646DPH.tsv tsv (transcript quantifications) 27.3 MB
ENCFF674JPQ.bam bam (alignments) 2.9 GB
ENCFF681VUU.bigWig bigWig (minus strand signal of unique reads) 76.0 MB
ENCFF682SZR.bigWig bigWig (plus strand signal of unique reads) 71.3 MB
ENCFF723ZLR.bam bam (alignments) 3.7 GB
ENCFF732OXG.bigWig bigWig (plus strand signal of unique reads) 70.8 MB
ENCFF737VON.bam bam (transcriptome alignments) 4.0 GB
ENCFF766UQQ.bigWig bigWig (plus strand signal of unique reads) 74.0 MB
ENCFF768YMX.bam bam (alignments) 4.5 GB
ENCFF769DTH.fastq fastq (reads) 1.8 GB
ENCFF785OVF.tsv tsv (gene quantifications) 9.4 MB
ENCFF817ZSA.tsv tsv (transcript quantifications) 29.8 MB
ENCFF837ALQ.tsv tsv (transcript quantifications) 24.9 MB
ENCFF843DAP.bigWig bigWig (minus strand signal of all reads) 77.4 MB
ENCFF859IDI.bigWig bigWig (minus strand signal of all reads) 75.0 MB
ENCFF860BXC.bigWig bigWig (minus strand signal of all reads) 71.1 MB
ENCFF920XDV.bigWig bigWig (minus strand signal of all reads) 86.1 MB
ENCFF936VFG.tsv tsv (gene quantifications) 10.4 MB
ENCFF947ZVU.bam bam (transcriptome alignments) 4.5 GB
ENCFF951EKJ.tsv tsv (transcript quantifications) 25.3 MB
ENCFF957ZFC.tsv tsv (transcript quantifications) 27.3 MB
ENCFF961YVV.bigWig bigWig (minus strand signal of all reads) 77.7 MB
ENCFF965KYG.bigWig bigWig (minus strand signal of unique reads) 68.9 MB
ENCFF970ZPS.bam bam (alignments) 2.9 GB
ENCFF971JLU.bam bam (alignments) 3.6 GB
ENCFF974XIU.tsv tsv (gene quantifications) 9.1 MB
ENCSR902WSK ENCSR · via encode_api

RNA-seq on K562 cells treated with an shRNA knockdown against SSRP1. (SSRP1_BGKLV29)

Homo sapiens

92 data files
FileTypeSize
ENCFF010WON.bigWig bigWig (minus strand signal of unique reads) 104.6 MB
ENCFF015KHK.bigWig bigWig (plus strand signal of unique reads) 98.0 MB
ENCFF030WEE.bam bam (transcriptome alignments) 8.0 GB
ENCFF032PWI.bigWig bigWig (plus strand signal of unique reads) 105.1 MB
ENCFF050PMV.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF069JBO.bigWig bigWig (plus strand signal of unique reads) 113.1 MB
ENCFF075WLL.bam bam (transcriptome alignments) 7.9 GB
ENCFF093YQM.bigWig bigWig (minus strand signal of unique reads) 103.0 MB
ENCFF102GDW.bigWig bigWig (plus strand signal of all reads) 112.5 MB
ENCFF121UTL.bigWig bigWig (minus strand signal of unique reads) 110.8 MB
ENCFF124ZOQ.bigWig bigWig (plus strand signal of unique reads) 95.5 MB
ENCFF128HBU.bigWig bigWig (plus strand signal of all reads) 127.6 MB
ENCFF137MKW.bigWig bigWig (plus strand signal of all reads) 117.7 MB
ENCFF177ACE.fastq fastq (reads) 3.8 GB
ENCFF181BOZ.bigWig bigWig (plus strand signal of all reads) 116.9 MB
ENCFF185LDU.bigWig bigWig (minus strand signal of all reads) 116.5 MB
ENCFF191YEB.tsv tsv (transcript quantifications) 29.9 MB
ENCFF193XTO.tsv tsv (gene quantifications) 10.4 MB
ENCFF199KOP.tsv tsv (transcript quantifications) 29.9 MB
ENCFF207FJC.bam bam (transcriptome alignments) 9.1 GB
ENCFF211BIK.bam bam (alignments) 6.2 GB
ENCFF216RJO.bam bam (alignments) 6.8 GB
ENCFF224EZC.tsv tsv (gene quantifications) 10.4 MB
ENCFF237TJX.tsv tsv (differential expression quantifications) 2.0 MB
ENCFF238FGA.bam bam (alignments) 6.6 GB
ENCFF256KJE.bigWig bigWig (plus strand signal of unique reads) 102.2 MB
ENCFF259EGM.tsv tsv (transcript quantifications) 27.5 MB
ENCFF259VCM.bigWig bigWig (plus strand signal of unique reads) 98.1 MB
ENCFF260RFP.bam bam (alignments) 6.2 GB
ENCFF266SNR.bam bam (alignments) 6.2 GB
ENCFF289HAE.bigWig bigWig (plus strand signal of unique reads) 105.0 MB
ENCFF294XAP.bigWig bigWig (plus strand signal of unique reads) 113.0 MB
ENCFF312VRJ.bigWig bigWig (minus strand signal of all reads) 114.8 MB
ENCFF330SBB.tsv tsv (differential expression quantifications) 2.6 MB
ENCFF333ZBD.bam bam (alignments) 5.5 GB
ENCFF337CPD.bigWig bigWig (plus strand signal of all reads) 117.7 MB
ENCFF373PNI.bigWig bigWig (plus strand signal of all reads) 101.3 MB
ENCFF377AOP.bigWig bigWig (minus strand signal of unique reads) 99.8 MB
ENCFF380RRG.bigWig bigWig (minus strand signal of unique reads) 93.0 MB
ENCFF392OCH.bigWig bigWig (plus strand signal of all reads) 126.0 MB
ENCFF402OZK.bigWig bigWig (plus strand signal of all reads) 111.8 MB
ENCFF420FSI.bam bam (transcriptome alignments) 9.1 GB
ENCFF423RPC.bigWig bigWig (minus strand signal of unique reads) 102.0 MB
ENCFF437VBT.tar tar (differential splicing quantifications) 5.1 MB
ENCFF438PFA.bigWig bigWig (minus strand signal of unique reads) 95.9 MB
ENCFF447NAE.tsv tsv (gene quantifications) 9.1 MB
ENCFF449GWT.bam bam (alignments) 5.4 GB
ENCFF483XPE.fastq fastq (reads) 4.3 GB
ENCFF487BDV.bam bam (transcriptome alignments) 10.4 GB
ENCFF522MSH.tsv tsv (transcript quantifications) 25.4 MB
ENCFF554DGQ.bam bam (alignments) 7.7 GB
ENCFF578RKK.bigWig bigWig (plus strand signal of all reads) 105.0 MB
ENCFF587SVB.bigWig bigWig (plus strand signal of all reads) 116.6 MB
ENCFF620MGY.bigWig bigWig (minus strand signal of unique reads) 102.4 MB
ENCFF630HEN.bam bam (alignments) 5.4 GB
ENCFF636VGJ.bigWig bigWig (plus strand signal of unique reads) 107.0 MB
ENCFF652FFP.fastq fastq (reads) 3.8 GB
ENCFF664CUO.tar tar (differential splicing quantifications) 4.2 MB
ENCFF669XAE.bam bam (alignments) 7.5 GB
ENCFF670XZJ.bigWig bigWig (minus strand signal of unique reads) 96.2 MB
ENCFF679KIM.fastq fastq (reads) 4.3 GB
ENCFF684OYZ.bigWig bigWig (plus strand signal of all reads) 107.9 MB
ENCFF695LHE.tar tar (differential splicing quantifications) 16.1 MB
ENCFF705KBK.tsv tsv (gene quantifications) 9.5 MB
ENCFF709AJF.bam bam (transcriptome alignments) 9.2 GB
ENCFF709LXT.bigWig bigWig (minus strand signal of all reads) 126.3 MB
ENCFF731IIJ.bigWig bigWig (minus strand signal of all reads) 111.3 MB
ENCFF737XCT.tsv tsv (gene quantifications) 9.1 MB
ENCFF747TNK.bigWig bigWig (minus strand signal of all reads) 124.6 MB
ENCFF752TSG.bigWig bigWig (plus strand signal of all reads) 127.6 MB
ENCFF753ZPC.bigWig bigWig (minus strand signal of all reads) 126.2 MB
ENCFF757ZVP.bigWig bigWig (minus strand signal of all reads) 99.6 MB
ENCFF760RSZ.bigWig bigWig (plus strand signal of unique reads) 112.4 MB
ENCFF762WXO.bigWig bigWig (minus strand signal of unique reads) 110.5 MB
ENCFF769CBC.tsv tsv (transcript quantifications) 25.0 MB
ENCFF770OZM.bigWig bigWig (minus strand signal of unique reads) 110.1 MB
ENCFF781IYB.bigWig bigWig (minus strand signal of all reads) 116.5 MB
ENCFF806LAL.tsv tsv (gene quantifications) 9.5 MB
ENCFF830UDU.tsv tsv (transcript quantifications) 27.5 MB
ENCFF832ZPV.bigWig bigWig (plus strand signal of unique reads) 104.5 MB
ENCFF855AGU.bigWig bigWig (minus strand signal of all reads) 109.9 MB
ENCFF855IWN.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF873WXV.tsv tsv (transcript quantifications) 25.0 MB
ENCFF885WBL.bam bam (alignments) 6.8 GB
ENCFF904INY.bigWig bigWig (minus strand signal of all reads) 106.2 MB
ENCFF942NJU.tsv tsv (transcript quantifications) 25.4 MB
ENCFF950VOR.tsv tsv (differential expression quantifications) 4.3 MB
ENCFF950ZYP.bigWig bigWig (minus strand signal of unique reads) 102.9 MB
ENCFF976WLJ.bigWig bigWig (minus strand signal of all reads) 103.8 MB
ENCFF991NYQ.bigWig bigWig (plus strand signal of unique reads) 104.3 MB
ENCFF993ZHC.bigWig bigWig (minus strand signal of all reads) 115.7 MB
ENCFF998QZZ.bam bam (alignments) 7.7 GB
ENCSR744YVR ENCSR · via encode_api

shRNA knockdown against PSIP1 in HepG2 cells followed by RNA-seq. (PSIP1_BGHLV18)

Homo sapiens

92 data files
FileTypeSize
ENCFF004JGA.bam bam (alignments) 4.3 GB
ENCFF007OCQ.bam bam (transcriptome alignments) 7.0 GB
ENCFF027DXU.tsv tsv (transcript quantifications) 27.4 MB
ENCFF035KPR.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF048MHS.bam bam (alignments) 4.9 GB
ENCFF048PKU.bam bam (alignments) 4.4 GB
ENCFF075CTB.tsv tsv (transcript quantifications) 24.9 MB
ENCFF099LRS.bam bam (alignments) 4.3 GB
ENCFF104QWX.tsv tsv (gene quantifications) 10.4 MB
ENCFF105TFU.bigWig bigWig (plus strand signal of all reads) 89.2 MB
ENCFF114CEZ.bigWig bigWig (minus strand signal of all reads) 87.6 MB
ENCFF115BPB.tar tar (differential splicing quantifications) 3.9 MB
ENCFF116TZM.bigWig bigWig (minus strand signal of all reads) 79.9 MB
ENCFF118WMA.bam bam (alignments) 4.2 GB
ENCFF124YXD.bigWig bigWig (minus strand signal of unique reads) 78.7 MB
ENCFF125TYE.bigWig bigWig (plus strand signal of all reads) 89.2 MB
ENCFF135ALY.bigWig bigWig (minus strand signal of unique reads) 73.4 MB
ENCFF162EMY.fastq fastq (reads) 2.7 GB
ENCFF162VAT.bam bam (transcriptome alignments) 6.2 GB
ENCFF206AGX.bigWig bigWig (plus strand signal of unique reads) 77.0 MB
ENCFF222NEL.tar tar (differential splicing quantifications) 3.3 MB
ENCFF273ATK.bigWig bigWig (plus strand signal of all reads) 80.5 MB
ENCFF275MJQ.bigWig bigWig (minus strand signal of unique reads) 79.1 MB
ENCFF282FPP.bigWig bigWig (plus strand signal of unique reads) 73.5 MB
ENCFF285EHP.bigWig bigWig (plus strand signal of unique reads) 76.9 MB
ENCFF296MQD.tsv tsv (transcript quantifications) 27.4 MB
ENCFF331PKG.bigWig bigWig (minus strand signal of all reads) 79.0 MB
ENCFF334LSM.bigWig bigWig (minus strand signal of unique reads) 78.5 MB
ENCFF335TCT.tsv tsv (transcript quantifications) 29.8 MB
ENCFF344LSJ.bam bam (transcriptome alignments) 6.2 GB
ENCFF345EQV.bam bam (transcriptome alignments) 6.5 GB
ENCFF348GZE.tsv tsv (differential expression quantifications) 1.8 MB
ENCFF351SXY.bigWig bigWig (plus strand signal of unique reads) 75.8 MB
ENCFF358TXV.bigWig bigWig (minus strand signal of all reads) 80.1 MB
ENCFF359WQQ.bigWig bigWig (plus strand signal of all reads) 89.2 MB
ENCFF360ITW.tar tar (differential splicing quantifications) 15.5 MB
ENCFF361PKX.tsv tsv (gene quantifications) 9.5 MB
ENCFF404HGT.tsv tsv (differential expression quantifications) 2.0 MB
ENCFF412QTU.bam bam (alignments) 5.1 GB
ENCFF415TBM.tsv tsv (transcript quantifications) 24.9 MB
ENCFF430OWU.bigWig bigWig (minus strand signal of all reads) 87.5 MB
ENCFF435JSI.bigWig bigWig (minus strand signal of unique reads) 75.4 MB
ENCFF436BAX.bigWig bigWig (plus strand signal of unique reads) 80.8 MB
ENCFF439EBR.tsv tsv (differential expression quantifications) 2.7 MB
ENCFF450WQT.bigWig bigWig (plus strand signal of unique reads) 81.8 MB
ENCFF482JDZ.bigWig bigWig (minus strand signal of all reads) 76.7 MB
ENCFF482OHF.bigWig bigWig (minus strand signal of unique reads) 71.3 MB
ENCFF521HYP.bigWig bigWig (minus strand signal of unique reads) 75.0 MB
ENCFF538FJO.tsv tsv (gene quantifications) 9.1 MB
ENCFF550IFV.bigWig bigWig (plus strand signal of all reads) 81.6 MB
ENCFF576CAF.fastq fastq (reads) 2.8 GB
ENCFF586QJP.bigWig bigWig (minus strand signal of all reads) 88.1 MB
ENCFF587THO.tsv tsv (transcript quantifications) 25.3 MB
ENCFF590UAE.bigWig bigWig (minus strand signal of all reads) 78.8 MB
ENCFF593TEH.tsv tsv (gene quantifications) 9.4 MB
ENCFF613VZG.bigWig bigWig (minus strand signal of all reads) 87.6 MB
ENCFF622NCX.bigWig bigWig (plus strand signal of all reads) 90.0 MB
ENCFF639IFO.bigWig bigWig (plus strand signal of all reads) 81.1 MB
ENCFF640ECV.bigWig bigWig (plus strand signal of unique reads) 77.5 MB
ENCFF672FTA.bigWig bigWig (minus strand signal of all reads) 88.1 MB
ENCFF672ZDT.bam bam (alignments) 5.2 GB
ENCFF686WMY.fastq fastq (reads) 2.8 GB
ENCFF690CQI.bigWig bigWig (plus strand signal of unique reads) 81.0 MB
ENCFF691HYH.bigWig bigWig (plus strand signal of unique reads) 81.2 MB
ENCFF693XYY.bigWig bigWig (plus strand signal of unique reads) 81.1 MB
ENCFF698FUM.bam bam (alignments) 5.0 GB
ENCFF698UIS.bigWig bigWig (plus strand signal of unique reads) 81.0 MB
ENCFF699AAY.bam bam (transcriptome alignments) 6.5 GB
ENCFF710SQV.bigWig bigWig (minus strand signal of unique reads) 79.4 MB
ENCFF721MJG.bigWig bigWig (minus strand signal of unique reads) 78.8 MB
ENCFF724GTI.bigWig bigWig (plus strand signal of all reads) 90.0 MB
ENCFF727JMA.bigWig bigWig (minus strand signal of all reads) 79.4 MB
ENCFF735WEM.tsv tsv (transcript quantifications) 29.8 MB
ENCFF747JMP.bigWig bigWig (plus strand signal of unique reads) 76.6 MB
ENCFF771UJD.bam bam (alignments) 4.2 GB
ENCFF776YLL.bigWig bigWig (plus strand signal of all reads) 82.0 MB
ENCFF797DYZ.bam bam (alignments) 5.0 GB
ENCFF805XLX.bigWig bigWig (minus strand signal of unique reads) 74.7 MB
ENCFF811DUX.fastq fastq (reads) 2.9 GB
ENCFF840ATK.bam bam (alignments) 5.2 GB
ENCFF842OIU.bigWig bigWig (minus strand signal of unique reads) 74.5 MB
ENCFF857OUL.bigWig bigWig (minus strand signal of unique reads) 79.1 MB
ENCFF863XOG.bam bam (alignments) 4.2 GB
ENCFF866MKL.bigWig bigWig (plus strand signal of all reads) 80.8 MB
ENCFF888FBH.tsv tsv (gene quantifications) 9.1 MB
ENCFF894AQI.bam bam (transcriptome alignments) 7.3 GB
ENCFF900IHC.tsv tsv (transcript quantifications) 25.3 MB
ENCFF932CDF.tsv tsv (differential expression quantifications) 4.2 MB
ENCFF958JBT.bigWig bigWig (plus strand signal of all reads) 78.6 MB
ENCFF977EAZ.bigWig bigWig (minus strand signal of all reads) 86.9 MB
ENCFF981JUB.tsv tsv (gene quantifications) 10.4 MB
ENCFF994OPJ.bigWig bigWig (plus strand signal of all reads) 88.3 MB
ENCSR717SJA ENCSR · via encode_api

shRNA knockdown against XRN2 in K562 cells followed by RNA-seq. (XRN2_BGKLV19)

Homo sapiens

92 data files
FileTypeSize
ENCFF004FLF.bigWig bigWig (minus strand signal of unique reads) 74.1 MB
ENCFF008NYW.bam bam (alignments) 4.1 GB
ENCFF011IXQ.tar tar (differential splicing quantifications) 14.7 MB
ENCFF027TUT.bigWig bigWig (plus strand signal of all reads) 95.3 MB
ENCFF037BLA.fastq fastq (reads) 2.1 GB
ENCFF050UOG.bam bam (transcriptome alignments) 4.7 GB
ENCFF069NJP.bigWig bigWig (minus strand signal of all reads) 80.7 MB
ENCFF092ZPJ.bam bam (alignments) 4.1 GB
ENCFF126UOP.bigWig bigWig (plus strand signal of all reads) 89.6 MB
ENCFF134NCC.fastq fastq (reads) 2.1 GB
ENCFF138MYM.bam bam (transcriptome alignments) 4.8 GB
ENCFF151NOV.bam bam (alignments) 3.4 GB
ENCFF152RDZ.tsv tsv (gene quantifications) 10.4 MB
ENCFF165RFJ.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF168CGP.bigWig bigWig (minus strand signal of all reads) 94.6 MB
ENCFF179BDH.bigWig bigWig (minus strand signal of unique reads) 77.1 MB
ENCFF186OZV.tsv tsv (differential expression quantifications) 4.3 MB
ENCFF195WZN.tsv tsv (transcript quantifications) 27.4 MB
ENCFF220SBA.bigWig bigWig (plus strand signal of all reads) 81.7 MB
ENCFF221SDO.bigWig bigWig (minus strand signal of unique reads) 78.8 MB
ENCFF236DBT.bigWig bigWig (plus strand signal of unique reads) 80.8 MB
ENCFF245XLO.bigWig bigWig (plus strand signal of all reads) 76.5 MB
ENCFF263VZK.bam bam (transcriptome alignments) 4.8 GB
ENCFF299SFG.tsv tsv (gene quantifications) 9.4 MB
ENCFF319PJX.bigWig bigWig (plus strand signal of all reads) 95.8 MB
ENCFF323VRT.tsv tsv (transcript quantifications) 29.8 MB
ENCFF334SXN.tsv tsv (gene quantifications) 9.1 MB
ENCFF335HVD.bigWig bigWig (minus strand signal of all reads) 75.2 MB
ENCFF341SLM.tsv tsv (transcript quantifications) 24.9 MB
ENCFF346SZE.bigWig bigWig (minus strand signal of unique reads) 83.8 MB
ENCFF354EAO.bigWig bigWig (minus strand signal of all reads) 86.5 MB
ENCFF355LHL.bigWig bigWig (minus strand signal of all reads) 89.1 MB
ENCFF376TJK.bigWig bigWig (plus strand signal of unique reads) 76.1 MB
ENCFF387GYI.fastq fastq (reads) 2.2 GB
ENCFF393MCJ.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF405VJX.tsv tsv (transcript quantifications) 24.8 MB
ENCFF406KII.bigWig bigWig (minus strand signal of all reads) 94.2 MB
ENCFF412IUR.bigWig bigWig (plus strand signal of all reads) 86.7 MB
ENCFF419KTE.bigWig bigWig (plus strand signal of unique reads) 86.3 MB
ENCFF421QDR.bigWig bigWig (plus strand signal of unique reads) 86.2 MB
ENCFF442ATA.bam bam (alignments) 3.4 GB
ENCFF444TGI.bam bam (transcriptome alignments) 5.4 GB
ENCFF450DGN.tsv tsv (gene quantifications) 10.4 MB
ENCFF453WNP.bigWig bigWig (minus strand signal of unique reads) 78.3 MB
ENCFF474YDD.bam bam (alignments) 4.3 GB
ENCFF490YCJ.tsv tsv (transcript quantifications) 25.3 MB
ENCFF502GUA.bigWig bigWig (minus strand signal of unique reads) 84.3 MB
ENCFF504WYQ.bigWig bigWig (minus strand signal of all reads) 79.8 MB
ENCFF505PJZ.bigWig bigWig (plus strand signal of all reads) 82.0 MB
ENCFF507NEL.tsv tsv (gene quantifications) 9.1 MB
ENCFF530NEW.bigWig bigWig (plus strand signal of all reads) 88.8 MB
ENCFF541AVR.bam bam (alignments) 4.1 GB
ENCFF549MOY.bigWig bigWig (minus strand signal of unique reads) 73.8 MB
ENCFF552GXF.tsv tsv (differential expression quantifications) 5.5 MB
ENCFF571EPB.tsv tsv (transcript quantifications) 25.3 MB
ENCFF605HJB.bigWig bigWig (minus strand signal of unique reads) 78.4 MB
ENCFF661YJY.bigWig bigWig (minus strand signal of unique reads) 79.5 MB
ENCFF663AUJ.bigWig bigWig (plus strand signal of all reads) 80.7 MB
ENCFF664QDM.bigWig bigWig (plus strand signal of unique reads) 81.2 MB
ENCFF665KYF.tsv tsv (transcript quantifications) 29.8 MB
ENCFF675UCS.bam bam (alignments) 4.3 GB
ENCFF736MJK.bigWig bigWig (plus strand signal of all reads) 88.0 MB
ENCFF740XRM.tar tar (differential splicing quantifications) 4.2 MB
ENCFF744THM.bam bam (transcriptome alignments) 4.7 GB
ENCFF747DUG.tsv tsv (gene quantifications) 9.4 MB
ENCFF767YEX.bigWig bigWig (minus strand signal of unique reads) 73.3 MB
ENCFF791SBO.bigWig bigWig (plus strand signal of unique reads) 74.7 MB
ENCFF794NEH.bigWig bigWig (minus strand signal of all reads) 80.3 MB
ENCFF794UFT.tar tar (differential splicing quantifications) 3.6 MB
ENCFF797OCJ.bigWig bigWig (plus strand signal of all reads) 95.9 MB
ENCFF798PUP.bigWig bigWig (plus strand signal of unique reads) 78.9 MB
ENCFF803WMH.bigWig bigWig (minus strand signal of all reads) 94.7 MB
ENCFF819AQM.tsv tsv (transcript quantifications) 27.4 MB
ENCFF835TZS.bigWig bigWig (minus strand signal of all reads) 87.8 MB
ENCFF844WJZ.bigWig bigWig (plus strand signal of unique reads) 80.1 MB
ENCFF845EQM.bam bam (alignments) 3.4 GB
ENCFF854OHX.bigWig bigWig (plus strand signal of all reads) 90.1 MB
ENCFF856PDG.bigWig bigWig (minus strand signal of all reads) 85.7 MB
ENCFF867MGW.bigWig bigWig (plus strand signal of unique reads) 75.6 MB
ENCFF872ZJJ.bigWig bigWig (minus strand signal of unique reads) 84.3 MB
ENCFF878WHV.fastq fastq (reads) 2.3 GB
ENCFF918GHJ.bigWig bigWig (plus strand signal of unique reads) 85.8 MB
ENCFF924ZAU.bam bam (transcriptome alignments) 5.4 GB
ENCFF933NGE.bam bam (alignments) 3.4 GB
ENCFF949HEV.bigWig bigWig (minus strand signal of unique reads) 69.6 MB
ENCFF950IVB.bam bam (alignments) 4.0 GB
ENCFF951ECT.bigWig bigWig (minus strand signal of all reads) 88.6 MB
ENCFF958UJZ.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF970SSU.bigWig bigWig (plus strand signal of unique reads) 80.0 MB
ENCFF978ZPN.bam bam (alignments) 3.3 GB
ENCFF980RRZ.bigWig bigWig (plus strand signal of unique reads) 71.5 MB
ENCFF992PIK.bam bam (alignments) 3.5 GB
ENCSR562CCA ENCSR · via encode_api

RNA-seq on K562 cells treated with an shRNA knockdown against SF1. (SF1_BGKLV28)

Homo sapiens

92 data files
FileTypeSize
ENCFF040LWR.bam bam (transcriptome alignments) 6.2 GB
ENCFF051MDL.bam bam (alignments) 4.6 GB
ENCFF053VTT.bigWig bigWig (minus strand signal of all reads) 56.8 MB
ENCFF057EZR.bigWig bigWig (plus strand signal of unique reads) 61.7 MB
ENCFF068MCR.tsv tsv (transcript quantifications) 29.8 MB
ENCFF102OKK.bigWig bigWig (minus strand signal of unique reads) 76.9 MB
ENCFF121NNX.bigWig bigWig (minus strand signal of unique reads) 85.5 MB
ENCFF122ZHD.bam bam (alignments) 2.4 GB
ENCFF144CHB.tsv tsv (gene quantifications) 10.4 MB
ENCFF150KRI.bam bam (transcriptome alignments) 3.4 GB
ENCFF159VKG.bigWig bigWig (minus strand signal of all reads) 96.7 MB
ENCFF180ECP.bigWig bigWig (plus strand signal of unique reads) 56.9 MB
ENCFF182APB.tsv tsv (transcript quantifications) 29.9 MB
ENCFF192CMI.bam bam (alignments) 3.0 GB
ENCFF217PCG.tsv tsv (gene quantifications) 9.1 MB
ENCFF250USR.bigWig bigWig (plus strand signal of all reads) 58.4 MB
ENCFF259FEK.bam bam (alignments) 2.9 GB
ENCFF261VYL.bam bam (alignments) 3.6 GB
ENCFF272XJU.bigWig bigWig (plus strand signal of unique reads) 79.7 MB
ENCFF314LOA.bam bam (alignments) 3.0 GB
ENCFF320VCG.bigWig bigWig (minus strand signal of unique reads) 85.9 MB
ENCFF325FDC.bam bam (transcriptome alignments) 3.4 GB
ENCFF326UBM.bigWig bigWig (minus strand signal of all reads) 67.1 MB
ENCFF330MBG.bigWig bigWig (minus strand signal of all reads) 60.1 MB
ENCFF340DUK.bigWig bigWig (plus strand signal of unique reads) 82.8 MB
ENCFF362VSP.bigWig bigWig (plus strand signal of all reads) 96.8 MB
ENCFF365DUW.bigWig bigWig (plus strand signal of all reads) 69.3 MB
ENCFF366AQK.bigWig bigWig (plus strand signal of all reads) 98.2 MB
ENCFF374ESM.tsv tsv (gene quantifications) 9.1 MB
ENCFF384FOJ.bigWig bigWig (minus strand signal of unique reads) 80.2 MB
ENCFF408VZJ.bigWig bigWig (plus strand signal of all reads) 86.4 MB
ENCFF415NVQ.tsv tsv (differential expression quantifications) 5.4 MB
ENCFF419HYQ.bigWig bigWig (plus strand signal of unique reads) 88.0 MB
ENCFF426CEY.tar tar (differential splicing quantifications) 5.1 MB
ENCFF437FBC.bigWig bigWig (minus strand signal of all reads) 94.7 MB
ENCFF454FAW.bam bam (alignments) 3.7 GB
ENCFF466MGA.bam bam (transcriptome alignments) 5.5 GB
ENCFF481EHK.bigWig bigWig (plus strand signal of unique reads) 82.8 MB
ENCFF502PWL.tsv tsv (transcript quantifications) 24.9 MB
ENCFF509HJJ.bigWig bigWig (minus strand signal of all reads) 68.0 MB
ENCFF518ERP.bigWig bigWig (plus strand signal of all reads) 87.5 MB
ENCFF560HMA.bigWig bigWig (plus strand signal of unique reads) 53.7 MB
ENCFF560IIK.bigWig bigWig (minus strand signal of unique reads) 55.7 MB
ENCFF560VOM.bigWig bigWig (minus strand signal of unique reads) 60.0 MB
ENCFF561XGE.bigWig bigWig (plus strand signal of all reads) 68.5 MB
ENCFF564FYK.bigWig bigWig (minus strand signal of all reads) 85.6 MB
ENCFF611ZFN.bigWig bigWig (minus strand signal of unique reads) 55.4 MB
ENCFF613RTV.bam bam (transcriptome alignments) 5.4 GB
ENCFF622RFX.tsv tsv (transcript quantifications) 27.2 MB
ENCFF632DJU.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF633KJQ.tar tar (differential splicing quantifications) 14.5 MB
ENCFF646IVM.bam bam (alignments) 2.4 GB
ENCFF656ELV.bigWig bigWig (plus strand signal of all reads) 61.3 MB
ENCFF672YNQ.bigWig bigWig (plus strand signal of all reads) 98.7 MB
ENCFF674FLR.bigWig bigWig (minus strand signal of unique reads) 60.6 MB
ENCFF674SUE.bigWig bigWig (plus strand signal of all reads) 69.1 MB
ENCFF675ONE.tsv tsv (transcript quantifications) 27.4 MB
ENCFF678WMM.tar tar (differential splicing quantifications) 3.9 MB
ENCFF718QAF.bigWig bigWig (minus strand signal of unique reads) 86.1 MB
ENCFF720LUH.bigWig bigWig (minus strand signal of all reads) 67.8 MB
ENCFF725CPV.bam bam (transcriptome alignments) 3.9 GB
ENCFF728RZM.tsv tsv (differential expression quantifications) 4.3 MB
ENCFF734AAF.bigWig bigWig (plus strand signal of unique reads) 62.4 MB
ENCFF750UGV.bam bam (alignments) 4.4 GB
ENCFF751XJI.tsv tsv (transcript quantifications) 24.9 MB
ENCFF768AUT.tsv tsv (gene quantifications) 10.4 MB
ENCFF776BEU.bigWig bigWig (plus strand signal of unique reads) 88.6 MB
ENCFF776LQV.tsv tsv (transcript quantifications) 25.4 MB
ENCFF778EMZ.bigWig bigWig (minus strand signal of unique reads) 60.7 MB
ENCFF786WCC.bigWig bigWig (minus strand signal of all reads) 83.8 MB
ENCFF802PZL.tsv tsv (differential expression quantifications) 2.8 MB
ENCFF815OVM.fastq fastq (reads) 1.7 GB
ENCFF834VEC.fastq fastq (reads) 2.6 GB
ENCFF837FNR.bam bam (alignments) 4.6 GB
ENCFF837TOJ.tsv tsv (gene quantifications) 9.4 MB
ENCFF840IOQ.bigWig bigWig (plus strand signal of all reads) 62.5 MB
ENCFF858LYF.bigWig bigWig (plus strand signal of unique reads) 88.6 MB
ENCFF866KJQ.bigWig bigWig (minus strand signal of all reads) 87.5 MB
ENCFF868LQB.bigWig bigWig (plus strand signal of all reads) 89.9 MB
ENCFF869WHC.bigWig bigWig (minus strand signal of unique reads) 51.9 MB
ENCFF906XGB.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF907NBP.tsv tsv (gene quantifications) 9.5 MB
ENCFF912TFL.bigWig bigWig (minus strand signal of unique reads) 80.4 MB
ENCFF912ZRI.bigWig bigWig (plus strand signal of unique reads) 57.4 MB
ENCFF918UJI.bigWig bigWig (minus strand signal of all reads) 61.0 MB
ENCFF923ABR.bam bam (alignments) 3.6 GB
ENCFF930IBV.fastq fastq (reads) 2.6 GB
ENCFF944JKZ.fastq fastq (reads) 1.6 GB
ENCFF950NBX.bam bam (alignments) 2.4 GB
ENCFF962DXZ.bigWig bigWig (minus strand signal of all reads) 96.2 MB
ENCFF973TOK.tsv tsv (transcript quantifications) 25.3 MB
ENCFF999QGZ.bigWig bigWig (plus strand signal of unique reads) 62.4 MB
ENCSR825QXH ENCSR · via encode_api

shRNA knockdown against PARN in HepG2 cells followed by RNA-seq. (PARN-BGHLV20)

Homo sapiens

92 data files
FileTypeSize
ENCFF004MZT.bigWig bigWig (minus strand signal of unique reads) 62.9 MB
ENCFF017TTY.bigWig bigWig (plus strand signal of unique reads) 64.6 MB
ENCFF030DVV.bigWig bigWig (minus strand signal of all reads) 74.1 MB
ENCFF038YUS.bam bam (alignments) 4.7 GB
ENCFF043CGW.bigWig bigWig (plus strand signal of unique reads) 68.7 MB
ENCFF100ASD.bigWig bigWig (minus strand signal of all reads) 67.6 MB
ENCFF108ONI.tsv tsv (differential expression quantifications) 5.5 MB
ENCFF109CWQ.bigWig bigWig (minus strand signal of all reads) 74.7 MB
ENCFF146URB.fastq fastq (reads) 2.7 GB
ENCFF156BQC.bigWig bigWig (minus strand signal of unique reads) 66.7 MB
ENCFF161GOY.tsv tsv (transcript quantifications) 25.3 MB
ENCFF185BCI.bam bam (alignments) 4.0 GB
ENCFF192NTL.bigWig bigWig (minus strand signal of unique reads) 66.4 MB
ENCFF193PGK.bam bam (alignments) 4.1 GB
ENCFF196AOU.tsv tsv (gene quantifications) 9.1 MB
ENCFF198FAU.bigWig bigWig (minus strand signal of all reads) 75.1 MB
ENCFF199FCO.bigWig bigWig (minus strand signal of unique reads) 59.0 MB
ENCFF208YKC.bam bam (transcriptome alignments) 6.4 GB
ENCFF213WCP.bigWig bigWig (plus strand signal of all reads) 76.1 MB
ENCFF224WZG.bam bam (alignments) 4.8 GB
ENCFF230TAM.bigWig bigWig (plus strand signal of unique reads) 60.6 MB
ENCFF238HWC.tar tar (differential splicing quantifications) 15.2 MB
ENCFF239JQA.bam bam (alignments) 4.0 GB
ENCFF241YIL.tsv tsv (transcript quantifications) 24.9 MB
ENCFF251AHM.bam bam (alignments) 4.8 GB
ENCFF251XLK.bigWig bigWig (minus strand signal of all reads) 66.4 MB
ENCFF253REQ.bigWig bigWig (minus strand signal of all reads) 66.9 MB
ENCFF272UJJ.bigWig bigWig (minus strand signal of unique reads) 66.6 MB
ENCFF281GVO.bigWig bigWig (minus strand signal of all reads) 64.1 MB
ENCFF308CDA.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF311XXW.bigWig bigWig (minus strand signal of unique reads) 63.0 MB
ENCFF318MIS.bam bam (transcriptome alignments) 5.7 GB
ENCFF322AVP.bigWig bigWig (plus strand signal of all reads) 76.1 MB
ENCFF367TMN.tsv tsv (gene quantifications) 9.4 MB
ENCFF376RGW.bigWig bigWig (minus strand signal of unique reads) 62.6 MB
ENCFF393LFT.tsv tsv (gene quantifications) 9.4 MB
ENCFF411GTZ.bigWig bigWig (plus strand signal of all reads) 76.4 MB
ENCFF443NWS.bigWig bigWig (plus strand signal of all reads) 75.3 MB
ENCFF451PPR.bigWig bigWig (plus strand signal of all reads) 68.2 MB
ENCFF468NVG.bam bam (transcriptome alignments) 6.4 GB
ENCFF481CNH.tsv tsv (transcript quantifications) 29.8 MB
ENCFF483ZPP.tsv tsv (gene quantifications) 10.4 MB
ENCFF484PNG.bigWig bigWig (plus strand signal of all reads) 64.9 MB
ENCFF487SSP.bam bam (alignments) 4.0 GB
ENCFF506WBY.bigWig bigWig (minus strand signal of unique reads) 60.4 MB
ENCFF509SUL.bigWig bigWig (plus strand signal of unique reads) 68.4 MB
ENCFF511CUI.bigWig bigWig (plus strand signal of unique reads) 64.2 MB
ENCFF514URV.bigWig bigWig (plus strand signal of all reads) 67.7 MB
ENCFF522OHT.bigWig bigWig (plus strand signal of unique reads) 68.3 MB
ENCFF558REQ.bam bam (alignments) 4.7 GB
ENCFF559QIB.bigWig bigWig (plus strand signal of all reads) 76.4 MB
ENCFF569YFM.bigWig bigWig (minus strand signal of unique reads) 66.8 MB
ENCFF579QKT.bam bam (alignments) 4.8 GB
ENCFF585WBX.bigWig bigWig (plus strand signal of unique reads) 64.7 MB
ENCFF592MWR.bigWig bigWig (minus strand signal of all reads) 63.6 MB
ENCFF592YHZ.bam bam (alignments) 4.1 GB
ENCFF595QER.bigWig bigWig (minus strand signal of unique reads) 67.1 MB
ENCFF614MDM.fastq fastq (reads) 2.5 GB
ENCFF615BAR.bam bam (transcriptome alignments) 5.8 GB
ENCFF626DRV.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF634TMR.bam bam (transcriptome alignments) 5.8 GB
ENCFF636EJR.bigWig bigWig (plus strand signal of all reads) 68.3 MB
ENCFF643INS.bigWig bigWig (minus strand signal of unique reads) 66.5 MB
ENCFF664ZCY.bigWig bigWig (plus strand signal of unique reads) 68.2 MB
ENCFF665CRU.fastq fastq (reads) 2.5 GB
ENCFF695BCZ.bigWig bigWig (plus strand signal of unique reads) 64.0 MB
ENCFF765JGJ.tsv tsv (transcript quantifications) 29.8 MB
ENCFF779LOU.bigWig bigWig (plus strand signal of all reads) 69.0 MB
ENCFF787HPG.bigWig bigWig (plus strand signal of unique reads) 68.3 MB
ENCFF799RXT.bigWig bigWig (plus strand signal of unique reads) 62.1 MB
ENCFF801RAR.bigWig bigWig (plus strand signal of all reads) 65.4 MB
ENCFF805UID.tar tar (differential splicing quantifications) 2.9 MB
ENCFF828OVZ.tsv tsv (gene quantifications) 9.1 MB
ENCFF859SVA.bam bam (alignments) 4.0 GB
ENCFF882NML.bigWig bigWig (plus strand signal of unique reads) 68.6 MB
ENCFF888UTV.tsv tsv (differential expression quantifications) 4.3 MB
ENCFF890UNV.bigWig bigWig (minus strand signal of all reads) 67.0 MB
ENCFF895AII.bigWig bigWig (minus strand signal of unique reads) 62.5 MB
ENCFF902XAI.tsv tsv (transcript quantifications) 27.3 MB
ENCFF930BLO.bigWig bigWig (minus strand signal of all reads) 74.2 MB
ENCFF944GJR.bigWig bigWig (minus strand signal of all reads) 75.1 MB
ENCFF945BIE.tsv tsv (transcript quantifications) 25.3 MB
ENCFF957PUO.tsv tsv (transcript quantifications) 24.9 MB
ENCFF959GSP.bam bam (transcriptome alignments) 5.7 GB
ENCFF964LRC.tsv tsv (gene quantifications) 10.4 MB
ENCFF964SXH.bam bam (alignments) 4.8 GB
ENCFF969VMA.fastq fastq (reads) 2.7 GB
ENCFF972VOC.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF977CIJ.bigWig bigWig (minus strand signal of all reads) 74.7 MB
ENCFF987BGX.tsv tsv (transcript quantifications) 27.3 MB
ENCFF987VKT.bigWig bigWig (plus strand signal of all reads) 75.3 MB
ENCFF992YHQ.tar tar (differential splicing quantifications) 3.4 MB
ENCSR998MZP ENCSR · via encode_api

shRNA knockdown against PRPF8 in HepG2 cells followed by RNA-seq. (PRPF8_BGHLV17)

Homo sapiens

92 data files
FileTypeSize
ENCFF006ZSU.bigWig bigWig (minus strand signal of unique reads) 71.4 MB
ENCFF036ZZO.tsv tsv (transcript quantifications) 25.2 MB
ENCFF046HPV.bigWig bigWig (minus strand signal of unique reads) 71.4 MB
ENCFF047ECT.tar tar (differential splicing quantifications) 15.0 MB
ENCFF047JOR.tsv tsv (gene quantifications) 10.4 MB
ENCFF053BMF.bigWig bigWig (minus strand signal of all reads) 67.7 MB
ENCFF054TGV.bam bam (alignments) 2.8 GB
ENCFF064FNG.bigWig bigWig (minus strand signal of all reads) 82.2 MB
ENCFF082BNK.bam bam (alignments) 2.9 GB
ENCFF099XTQ.bigWig bigWig (minus strand signal of all reads) 78.9 MB
ENCFF110YUF.bigWig bigWig (plus strand signal of all reads) 72.2 MB
ENCFF112WXE.fastq fastq (reads) 1.8 GB
ENCFF124KBD.bam bam (alignments) 3.0 GB
ENCFF134JJR.bam bam (alignments) 2.9 GB
ENCFF142KZO.bigWig bigWig (plus strand signal of unique reads) 68.5 MB
ENCFF142YXK.bigWig bigWig (minus strand signal of all reads) 81.5 MB
ENCFF152OBU.bam bam (transcriptome alignments) 3.8 GB
ENCFF192LSC.bam bam (alignments) 3.4 GB
ENCFF192OBE.tsv tsv (transcript quantifications) 29.7 MB
ENCFF195NPE.bam bam (alignments) 3.6 GB
ENCFF198XKY.fastq fastq (reads) 1.7 GB
ENCFF226GBR.tsv tsv (transcript quantifications) 25.2 MB
ENCFF228LMO.bigWig bigWig (plus strand signal of all reads) 69.0 MB
ENCFF232MJZ.tar tar (differential splicing quantifications) 3.9 MB
ENCFF240FLY.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF246GVP.bam bam (transcriptome alignments) 4.2 GB
ENCFF278QIT.bam bam (transcriptome alignments) 3.7 GB
ENCFF285CHT.fastq fastq (reads) 1.8 GB
ENCFF286AAX.bigWig bigWig (plus strand signal of unique reads) 71.0 MB
ENCFF301SLO.tsv tsv (transcript quantifications) 27.4 MB
ENCFF315FRG.bigWig bigWig (plus strand signal of unique reads) 70.4 MB
ENCFF320JCP.bigWig bigWig (plus strand signal of unique reads) 74.9 MB
ENCFF346YUA.tsv tsv (differential expression quantifications) 4.3 MB
ENCFF353LTU.bam bam (transcriptome alignments) 4.2 GB
ENCFF364QVJ.tsv tsv (transcript quantifications) 24.8 MB
ENCFF383XQQ.bigWig bigWig (plus strand signal of unique reads) 64.7 MB
ENCFF415VAT.bigWig bigWig (plus strand signal of all reads) 83.7 MB
ENCFF440BGI.tsv tsv (differential expression quantifications) 3.0 MB
ENCFF453CKR.bigWig bigWig (minus strand signal of all reads) 74.9 MB
ENCFF462ZWX.bigWig bigWig (plus strand signal of unique reads) 73.3 MB
ENCFF477VJB.bigWig bigWig (minus strand signal of unique reads) 71.5 MB
ENCFF484YWZ.bigWig bigWig (plus strand signal of all reads) 80.1 MB
ENCFF499RLT.tsv tsv (gene quantifications) 10.4 MB
ENCFF511WCD.tsv tsv (gene quantifications) 9.1 MB
ENCFF514MYK.bigWig bigWig (plus strand signal of unique reads) 73.2 MB
ENCFF530DTM.fastq fastq (reads) 1.8 GB
ENCFF535KGN.bigWig bigWig (minus strand signal of unique reads) 69.1 MB
ENCFF552BGI.bigWig bigWig (plus strand signal of all reads) 83.6 MB
ENCFF556JQE.bam bam (alignments) 2.8 GB
ENCFF569VUS.bigWig bigWig (plus strand signal of all reads) 80.3 MB
ENCFF581QDU.bigWig bigWig (minus strand signal of unique reads) 64.9 MB
ENCFF588BRI.bigWig bigWig (plus strand signal of all reads) 80.2 MB
ENCFF627JHO.bigWig bigWig (minus strand signal of unique reads) 66.7 MB
ENCFF632CCU.bigWig bigWig (plus strand signal of unique reads) 75.2 MB
ENCFF634HEZ.bigWig bigWig (plus strand signal of all reads) 74.9 MB
ENCFF649RHP.bam bam (alignments) 3.4 GB
ENCFF653HBG.bigWig bigWig (minus strand signal of all reads) 78.8 MB
ENCFF667LMR.bigWig bigWig (plus strand signal of unique reads) 66.7 MB
ENCFF673NPW.bam bam (alignments) 2.9 GB
ENCFF727IHN.bam bam (alignments) 3.3 GB
ENCFF752HWK.bigWig bigWig (minus strand signal of all reads) 69.9 MB
ENCFF759MPH.bigWig bigWig (minus strand signal of unique reads) 73.3 MB
ENCFF771GAO.tsv tsv (gene quantifications) 9.4 MB
ENCFF773SCM.bigWig bigWig (minus strand signal of all reads) 82.2 MB
ENCFF782EYM.bigWig bigWig (plus strand signal of unique reads) 68.3 MB
ENCFF798PXG.tsv tsv (transcript quantifications) 24.8 MB
ENCFF805PRU.bam bam (alignments) 3.6 GB
ENCFF818ZYF.bam bam (transcriptome alignments) 3.7 GB
ENCFF819TIC.bigWig bigWig (minus strand signal of unique reads) 68.7 MB
ENCFF820QCM.tsv tsv (gene quantifications) 9.4 MB
ENCFF834LJA.tsv tsv (transcript quantifications) 27.3 MB
ENCFF842TKX.bam bam (alignments) 3.4 GB
ENCFF845MLU.bigWig bigWig (minus strand signal of all reads) 73.5 MB
ENCFF846BNZ.bigWig bigWig (minus strand signal of unique reads) 73.0 MB
ENCFF849UVA.bigWig bigWig (minus strand signal of all reads) 78.9 MB
ENCFF852TJJ.bigWig bigWig (minus strand signal of unique reads) 73.3 MB
ENCFF857MKL.bigWig bigWig (plus strand signal of unique reads) 73.2 MB
ENCFF858PUJ.bigWig bigWig (minus strand signal of unique reads) 63.0 MB
ENCFF872YCZ.bigWig bigWig (plus strand signal of unique reads) 75.3 MB
ENCFF875TJX.bigWig bigWig (minus strand signal of all reads) 70.9 MB
ENCFF879UCI.tsv tsv (gene quantifications) 9.1 MB
ENCFF883ZKH.tsv tsv (transcript quantifications) 29.7 MB
ENCFF891FPC.bigWig bigWig (plus strand signal of all reads) 82.8 MB
ENCFF898ICC.bigWig bigWig (plus strand signal of all reads) 71.2 MB
ENCFF902YDX.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF906AGM.bam bam (transcriptome alignments) 3.7 GB
ENCFF907SOC.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF921IMJ.bigWig bigWig (plus strand signal of all reads) 76.4 MB
ENCFF963BWN.bigWig bigWig (minus strand signal of unique reads) 66.7 MB
ENCFF971JMP.bigWig bigWig (minus strand signal of all reads) 71.7 MB
ENCFF985ELI.tar tar (differential splicing quantifications) 3.1 MB
ENCFF987SAJ.bigWig bigWig (plus strand signal of all reads) 73.1 MB
ENCSR620HAA ENCSR · via encode_api

RNA-seq on HepG2 cells treated with an shRNA knockdown against PPIG. (PPIG_BGHLV27)

Homo sapiens

92 data files
FileTypeSize
ENCFF020EZZ.bigWig bigWig (minus strand signal of all reads) 88.0 MB
ENCFF051HQS.tsv tsv (gene quantifications) 9.1 MB
ENCFF055OBW.bigWig bigWig (plus strand signal of all reads) 90.3 MB
ENCFF058JMW.bigWig bigWig (minus strand signal of all reads) 98.5 MB
ENCFF061NMU.bigWig bigWig (minus strand signal of all reads) 89.2 MB
ENCFF070GLU.bigWig bigWig (plus strand signal of unique reads) 78.2 MB
ENCFF078TRC.bigWig bigWig (minus strand signal of unique reads) 88.1 MB
ENCFF081ONT.bigWig bigWig (minus strand signal of unique reads) 83.9 MB
ENCFF084BRC.bam bam (alignments) 5.8 GB
ENCFF085TZS.bigWig bigWig (minus strand signal of all reads) 83.5 MB
ENCFF114JRU.bam bam (alignments) 5.8 GB
ENCFF119OKB.bam bam (transcriptome alignments) 7.8 GB
ENCFF124BZK.tsv tsv (transcript quantifications) 25.0 MB
ENCFF139AKT.bam bam (transcriptome alignments) 9.1 GB
ENCFF143III.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF143VKQ.bigWig bigWig (minus strand signal of all reads) 80.2 MB
ENCFF156ZHP.bigWig bigWig (minus strand signal of all reads) 98.5 MB
ENCFF160OQK.bigWig bigWig (minus strand signal of all reads) 89.2 MB
ENCFF166ENE.bigWig bigWig (plus strand signal of all reads) 84.7 MB
ENCFF167EJW.tsv tsv (gene quantifications) 10.4 MB
ENCFF169NUI.tsv tsv (differential expression quantifications) 2.8 MB
ENCFF170FCG.bigWig bigWig (minus strand signal of unique reads) 87.6 MB
ENCFF171INT.tsv tsv (transcript quantifications) 27.4 MB
ENCFF193ILX.tsv tsv (transcript quantifications) 25.3 MB
ENCFF211MUI.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF226HTQ.bigWig bigWig (minus strand signal of unique reads) 76.9 MB
ENCFF229YWZ.tsv tsv (transcript quantifications) 25.0 MB
ENCFF239AEP.bigWig bigWig (plus strand signal of all reads) 82.3 MB
ENCFF269ERY.bigWig bigWig (plus strand signal of unique reads) 86.2 MB
ENCFF269JQW.bigWig bigWig (plus strand signal of all reads) 90.3 MB
ENCFF274ATI.bigWig bigWig (plus strand signal of unique reads) 82.2 MB
ENCFF288UMN.tsv tsv (differential expression quantifications) 4.2 MB
ENCFF311LEM.bam bam (transcriptome alignments) 6.8 GB
ENCFF315DNE.bam bam (alignments) 4.1 GB
ENCFF329FDS.bam bam (alignments) 4.0 GB
ENCFF331ZXL.bigWig bigWig (plus strand signal of all reads) 99.6 MB
ENCFF346TPY.bigWig bigWig (plus strand signal of unique reads) 75.8 MB
ENCFF351EZE.bigWig bigWig (plus strand signal of all reads) 90.1 MB
ENCFF374SOY.bam bam (alignments) 4.8 GB
ENCFF387EFD.tar tar (differential splicing quantifications) 4.2 MB
ENCFF401LMA.bigWig bigWig (plus strand signal of all reads) 89.5 MB
ENCFF407WQF.bigWig bigWig (minus strand signal of unique reads) 80.5 MB
ENCFF417JCA.bigWig bigWig (minus strand signal of all reads) 89.5 MB
ENCFF434QLZ.bigWig bigWig (plus strand signal of unique reads) 83.6 MB
ENCFF447HTA.bam bam (alignments) 4.7 GB
ENCFF461YVJ.tsv tsv (transcript quantifications) 29.9 MB
ENCFF464MJP.bigWig bigWig (plus strand signal of all reads) 81.5 MB
ENCFF467YPI.bigWig bigWig (plus strand signal of all reads) 99.6 MB
ENCFF481FPD.bigWig bigWig (minus strand signal of unique reads) 80.5 MB
ENCFF487VCV.bigWig bigWig (plus strand signal of unique reads) 89.9 MB
ENCFF519CQZ.tsv tsv (transcript quantifications) 27.4 MB
ENCFF527SUH.bam bam (alignments) 5.0 GB
ENCFF536KEP.bigWig bigWig (minus strand signal of unique reads) 76.6 MB
ENCFF543KPW.bam bam (alignments) 4.0 GB
ENCFF543MBY.bigWig bigWig (plus strand signal of unique reads) 89.4 MB
ENCFF545AGU.bigWig bigWig (minus strand signal of unique reads) 88.1 MB
ENCFF579ILU.bigWig bigWig (minus strand signal of all reads) 96.6 MB
ENCFF585WPZ.bam bam (alignments) 5.6 GB
ENCFF610SFS.bigWig bigWig (minus strand signal of all reads) 81.4 MB
ENCFF614VYN.bigWig bigWig (plus strand signal of unique reads) 89.9 MB
ENCFF620ZQK.bigWig bigWig (minus strand signal of all reads) 90.7 MB
ENCFF622YVB.bigWig bigWig (minus strand signal of unique reads) 81.6 MB
ENCFF623DGY.bigWig bigWig (plus strand signal of unique reads) 78.3 MB
ENCFF663JMD.fastq fastq (reads) 3.4 GB
ENCFF698RVL.tsv tsv (gene quantifications) 9.5 MB
ENCFF708DDN.tsv tsv (gene quantifications) 9.5 MB
ENCFF747VCZ.fastq fastq (reads) 3.3 GB
ENCFF764FJR.bigWig bigWig (plus strand signal of unique reads) 81.7 MB
ENCFF764VIK.fastq fastq (reads) 2.8 GB
ENCFF771MTR.bigWig bigWig (minus strand signal of unique reads) 74.0 MB
ENCFF778KDF.bigWig bigWig (plus strand signal of all reads) 97.6 MB
ENCFF782ANN.tar tar (differential splicing quantifications) 16.6 MB
ENCFF793YGY.tsv tsv (transcript quantifications) 29.9 MB
ENCFF804ANI.bigWig bigWig (plus strand signal of all reads) 90.6 MB
ENCFF813WLA.bigWig bigWig (minus strand signal of unique reads) 84.4 MB
ENCFF833AAU.bam bam (transcriptome alignments) 6.8 GB
ENCFF833HEX.bam bam (alignments) 4.6 GB
ENCFF848TWJ.bigWig bigWig (plus strand signal of unique reads) 82.2 MB
ENCFF854XLJ.tar tar (differential splicing quantifications) 3.6 MB
ENCFF859OBK.bigWig bigWig (plus strand signal of all reads) 92.1 MB
ENCFF890ITA.fastq fastq (reads) 2.9 GB
ENCFF905EPM.bigWig bigWig (plus strand signal of unique reads) 85.5 MB
ENCFF911WXB.tsv tsv (gene quantifications) 10.4 MB
ENCFF918IAW.bigWig bigWig (minus strand signal of unique reads) 80.1 MB
ENCFF938RWY.tsv tsv (transcript quantifications) 25.4 MB
ENCFF951SHZ.bigWig bigWig (minus strand signal of all reads) 89.2 MB
ENCFF954IPK.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF960KWM.bam bam (alignments) 5.0 GB
ENCFF965NWJ.bam bam (alignments) 4.6 GB
ENCFF977ROY.bam bam (transcriptome alignments) 8.0 GB
ENCFF984EJF.tsv tsv (gene quantifications) 9.1 MB
ENCFF992KSS.bam bam (transcriptome alignments) 8.0 GB
ENCSR644AIM ENCSR · via encode_api

RNA-seq on HepG2 cells treated with an shRNA knockdown against SF1. (SF1_BGHLV26)

Homo sapiens

92 data files
FileTypeSize
ENCFF033ZTE.bigWig bigWig (minus strand signal of all reads) 82.4 MB
ENCFF037GOA.bigWig bigWig (minus strand signal of unique reads) 70.5 MB
ENCFF037GYP.fastq fastq (reads) 3.0 GB
ENCFF053DIX.bigWig bigWig (plus strand signal of unique reads) 71.8 MB
ENCFF059NBD.bigWig bigWig (plus strand signal of all reads) 84.4 MB
ENCFF061IVX.bigWig bigWig (plus strand signal of unique reads) 76.3 MB
ENCFF063VUE.bigWig bigWig (plus strand signal of all reads) 86.1 MB
ENCFF065CUW.bigWig bigWig (plus strand signal of unique reads) 77.1 MB
ENCFF084KXM.tsv tsv (gene quantifications) 9.1 MB
ENCFF097BDR.bigWig bigWig (minus strand signal of all reads) 84.3 MB
ENCFF099DUR.bigWig bigWig (plus strand signal of unique reads) 77.1 MB
ENCFF107PQK.bigWig bigWig (minus strand signal of all reads) 74.1 MB
ENCFF129ECT.bigWig bigWig (plus strand signal of all reads) 84.4 MB
ENCFF141VLI.tsv tsv (transcript quantifications) 25.4 MB
ENCFF144UJS.bigWig bigWig (minus strand signal of unique reads) 69.5 MB
ENCFF159KNS.bam bam (alignments) 5.0 GB
ENCFF164JOP.bam bam (alignments) 4.0 GB
ENCFF168YNA.bigWig bigWig (minus strand signal of all reads) 73.9 MB
ENCFF181WEP.tsv tsv (transcript quantifications) 29.9 MB
ENCFF192DDV.bigWig bigWig (plus strand signal of all reads) 75.7 MB
ENCFF203ZAP.bigWig bigWig (minus strand signal of all reads) 84.3 MB
ENCFF218YRV.bigWig bigWig (minus strand signal of unique reads) 74.9 MB
ENCFF220VAO.bam bam (alignments) 4.0 GB
ENCFF223LEN.bigWig bigWig (plus strand signal of unique reads) 68.8 MB
ENCFF229RRW.bigWig bigWig (plus strand signal of all reads) 73.3 MB
ENCFF231FUF.tar tar (differential splicing quantifications) 3.1 MB
ENCFF242LYU.bigWig bigWig (minus strand signal of unique reads) 74.1 MB
ENCFF268DWZ.bigWig bigWig (minus strand signal of unique reads) 75.7 MB
ENCFF281SEQ.bigWig bigWig (minus strand signal of all reads) 75.7 MB
ENCFF312CTA.bigWig bigWig (minus strand signal of unique reads) 74.0 MB
ENCFF313CHM.tsv tsv (transcript quantifications) 29.9 MB
ENCFF323CVS.bam bam (transcriptome alignments) 7.3 GB
ENCFF332XYA.fastq fastq (reads) 2.9 GB
ENCFF363EQR.bam bam (transcriptome alignments) 6.4 GB
ENCFF367RQM.fastq fastq (reads) 2.9 GB
ENCFF400VOS.bigWig bigWig (plus strand signal of all reads) 77.6 MB
ENCFF420IUU.bam bam (transcriptome alignments) 6.3 GB
ENCFF452IUK.tsv tsv (gene quantifications) 10.4 MB
ENCFF469XWM.fastq fastq (reads) 2.9 GB
ENCFF480LWO.bigWig bigWig (minus strand signal of all reads) 84.3 MB
ENCFF489CWE.bigWig bigWig (plus strand signal of all reads) 76.6 MB
ENCFF492FWO.tar tar (differential splicing quantifications) 14.7 MB
ENCFF492HDH.tsv tsv (gene quantifications) 10.4 MB
ENCFF497PAR.bigWig bigWig (minus strand signal of all reads) 82.6 MB
ENCFF511QSP.bigWig bigWig (plus strand signal of all reads) 75.9 MB
ENCFF514GKA.bam bam (alignments) 4.0 GB
ENCFF520QIL.bam bam (alignments) 4.9 GB
ENCFF523GOI.bigWig bigWig (minus strand signal of unique reads) 74.9 MB
ENCFF540PUH.bigWig bigWig (plus strand signal of all reads) 86.1 MB
ENCFF545WJM.bigWig bigWig (plus strand signal of unique reads) 78.0 MB
ENCFF549XTI.tsv tsv (differential expression quantifications) 2.0 MB
ENCFF554JPX.bigWig bigWig (plus strand signal of unique reads) 71.6 MB
ENCFF572DFJ.tsv tsv (gene quantifications) 9.5 MB
ENCFF586WHY.bam bam (alignments) 4.8 GB
ENCFF633JLJ.bam bam (alignments) 4.9 GB
ENCFF642HSR.bigWig bigWig (plus strand signal of all reads) 84.1 MB
ENCFF657AVU.bam bam (transcriptome alignments) 7.3 GB
ENCFF672YCY.tsv tsv (transcript quantifications) 25.4 MB
ENCFF719BCT.bigWig bigWig (minus strand signal of unique reads) 74.0 MB
ENCFF721EAE.bigWig bigWig (minus strand signal of all reads) 82.6 MB
ENCFF724GNI.bigWig bigWig (minus strand signal of all reads) 75.0 MB
ENCFF727HED.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF729FMH.tsv tsv (transcript quantifications) 27.3 MB
ENCFF739KLR.bigWig bigWig (plus strand signal of all reads) 85.9 MB
ENCFF742DFH.bam bam (alignments) 4.1 GB
ENCFF749IDS.tsv tsv (differential expression quantifications) 1.8 MB
ENCFF750TDO.bigWig bigWig (plus strand signal of all reads) 78.4 MB
ENCFF768QPQ.bigWig bigWig (minus strand signal of unique reads) 69.4 MB
ENCFF772YRQ.bam bam (alignments) 4.9 GB
ENCFF795CGZ.tsv tsv (differential expression quantifications) 4.2 MB
ENCFF806SSV.bigWig bigWig (plus strand signal of unique reads) 76.3 MB
ENCFF807QTK.bigWig bigWig (minus strand signal of unique reads) 70.5 MB
ENCFF828OTM.bigWig bigWig (minus strand signal of all reads) 76.6 MB
ENCFF837VXC.bam bam (alignments) 5.0 GB
ENCFF848NYF.bigWig bigWig (plus strand signal of unique reads) 76.4 MB
ENCFF850ZDI.bam bam (transcriptome alignments) 6.4 GB
ENCFF863NJX.bigWig bigWig (plus strand signal of unique reads) 72.7 MB
ENCFF882FAR.bigWig bigWig (minus strand signal of unique reads) 66.5 MB
ENCFF887DJY.bam bam (alignments) 4.1 GB
ENCFF891MOC.bigWig bigWig (minus strand signal of all reads) 71.5 MB
ENCFF897CVJ.bam bam (alignments) 4.1 GB
ENCFF899LOX.bigWig bigWig (plus strand signal of unique reads) 69.9 MB
ENCFF936QTC.bigWig bigWig (plus strand signal of unique reads) 72.6 MB
ENCFF938BQO.tsv tsv (gene quantifications) 9.1 MB
ENCFF939XNE.tar tar (differential splicing quantifications) 3.7 MB
ENCFF940JLU.tsv tsv (transcript quantifications) 25.0 MB
ENCFF942TOW.tsv tsv (transcript quantifications) 27.4 MB
ENCFF944WRR.bam bam (transcriptome alignments) 6.4 GB
ENCFF947AAX.tsv tsv (gene quantifications) 9.5 MB
ENCFF959BVB.tsv tsv (transcript quantifications) 25.0 MB
ENCFF962JLZ.bigWig bigWig (minus strand signal of unique reads) 67.6 MB
ENCFF992BIJ.tsv tsv (differential expression quantifications) 5.5 MB
ENCSR011BBS ENCSR · via encode_api

RNA-seq on HepG2 cells treated with an shRNA knockdown against SART3. (SART3-BGHLV22)

Homo sapiens

92 data files
FileTypeSize
ENCFF002MGP.bigWig bigWig (plus strand signal of unique reads) 75.5 MB
ENCFF015POB.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF017QYX.bam bam (transcriptome alignments) 8.0 GB
ENCFF020PEM.bam bam (transcriptome alignments) 5.9 GB
ENCFF038PKJ.bigWig bigWig (minus strand signal of all reads) 80.1 MB
ENCFF038YGT.bigWig bigWig (minus strand signal of all reads) 89.0 MB
ENCFF040GRM.bigWig bigWig (minus strand signal of unique reads) 67.0 MB
ENCFF043ZNV.bam bam (alignments) 4.9 GB
ENCFF056ATS.bam bam (alignments) 4.7 GB
ENCFF076NPU.bigWig bigWig (plus strand signal of unique reads) 72.3 MB
ENCFF084YDQ.bigWig bigWig (plus strand signal of all reads) 80.3 MB
ENCFF091UJQ.bigWig bigWig (plus strand signal of unique reads) 76.3 MB
ENCFF096HKK.bigWig bigWig (plus strand signal of all reads) 80.9 MB
ENCFF096VEN.bigWig bigWig (plus strand signal of all reads) 89.7 MB
ENCFF099GGP.bam bam (alignments) 4.8 GB
ENCFF106MXP.bigWig bigWig (plus strand signal of unique reads) 69.4 MB
ENCFF123RSU.tsv tsv (transcript quantifications) 25.3 MB
ENCFF172AYP.bam bam (alignments) 4.0 GB
ENCFF202SHB.bigWig bigWig (minus strand signal of unique reads) 65.7 MB
ENCFF208OPK.bigWig bigWig (minus strand signal of unique reads) 70.9 MB
ENCFF237HCH.bam bam (transcriptome alignments) 5.9 GB
ENCFF251EJI.bam bam (alignments) 5.0 GB
ENCFF252XFI.tar tar (differential splicing quantifications) 3.8 MB
ENCFF254RRV.bam bam (alignments) 5.6 GB
ENCFF263HPN.bam bam (transcriptome alignments) 7.1 GB
ENCFF271OQH.tar tar (differential splicing quantifications) 15.5 MB
ENCFF291EIB.bigWig bigWig (minus strand signal of unique reads) 71.5 MB
ENCFF328JWO.tsv tsv (gene quantifications) 9.1 MB
ENCFF330ZCM.bigWig bigWig (plus strand signal of unique reads) 72.8 MB
ENCFF335PLK.tsv tsv (differential expression quantifications) 1.8 MB
ENCFF336KWZ.bigWig bigWig (minus strand signal of all reads) 82.3 MB
ENCFF404NGC.bigWig bigWig (minus strand signal of unique reads) 79.4 MB
ENCFF413EYD.tsv tsv (gene quantifications) 10.4 MB
ENCFF425KWU.bigWig bigWig (plus strand signal of unique reads) 77.0 MB
ENCFF433SRJ.tsv tsv (gene quantifications) 10.4 MB
ENCFF434HGS.tsv tsv (transcript quantifications) 27.2 MB
ENCFF438VZQ.bigWig bigWig (minus strand signal of all reads) 70.3 MB
ENCFF454WQS.bigWig bigWig (minus strand signal of all reads) 79.3 MB
ENCFF463QRF.bam bam (alignments) 4.1 GB
ENCFF467ZGD.bigWig bigWig (minus strand signal of unique reads) 74.0 MB
ENCFF477ULI.bigWig bigWig (minus strand signal of unique reads) 78.8 MB
ENCFF498BJP.bigWig bigWig (plus strand signal of unique reads) 72.8 MB
ENCFF516BIY.bigWig bigWig (plus strand signal of unique reads) 80.9 MB
ENCFF517JKY.bigWig bigWig (minus strand signal of unique reads) 68.0 MB
ENCFF525VTU.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF559CQJ.bigWig bigWig (plus strand signal of all reads) 73.1 MB
ENCFF571FMN.bigWig bigWig (plus strand signal of all reads) 71.9 MB
ENCFF585FOQ.bigWig bigWig (minus strand signal of all reads) 79.3 MB
ENCFF602QNA.bigWig bigWig (plus strand signal of all reads) 71.2 MB
ENCFF605RWZ.bigWig bigWig (plus strand signal of all reads) 89.9 MB
ENCFF607EFP.bigWig bigWig (minus strand signal of unique reads) 79.3 MB
ENCFF613LDB.bigWig bigWig (minus strand signal of all reads) 81.1 MB
ENCFF640DAQ.bam bam (alignments) 5.8 GB
ENCFF649MBJ.bigWig bigWig (minus strand signal of unique reads) 75.6 MB
ENCFF655OTC.tsv tsv (transcript quantifications) 24.9 MB
ENCFF670SKZ.tsv tsv (transcript quantifications) 25.3 MB
ENCFF689EHL.bigWig bigWig (minus strand signal of unique reads) 71.5 MB
ENCFF696XQP.bigWig bigWig (plus strand signal of all reads) 80.9 MB
ENCFF699ELP.tsv tsv (transcript quantifications) 29.8 MB
ENCFF705YLZ.fastq fastq (reads) 2.6 GB
ENCFF719JTP.bigWig bigWig (minus strand signal of all reads) 80.1 MB
ENCFF725YCP.tsv tsv (differential expression quantifications) 4.2 MB
ENCFF732LSE.bam bam (alignments) 5.8 GB
ENCFF740QYS.bigWig bigWig (minus strand signal of unique reads) 75.0 MB
ENCFF780JNQ.bigWig bigWig (minus strand signal of all reads) 71.2 MB
ENCFF793ADA.tar tar (differential splicing quantifications) 3.2 MB
ENCFF794ZUD.tsv tsv (gene quantifications) 9.5 MB
ENCFF795RLM.bigWig bigWig (plus strand signal of all reads) 80.0 MB
ENCFF818TVC.bigWig bigWig (minus strand signal of all reads) 72.3 MB
ENCFF833EAW.fastq fastq (reads) 3.1 GB
ENCFF835VYB.tsv tsv (transcript quantifications) 24.9 MB
ENCFF843SQD.bigWig bigWig (plus strand signal of unique reads) 80.3 MB
ENCFF879VXM.fastq fastq (reads) 3.1 GB
ENCFF880HQM.bam bam (transcriptome alignments) 7.2 GB
ENCFF889YDN.tsv tsv (gene quantifications) 9.1 MB
ENCFF890QLJ.tsv tsv (transcript quantifications) 29.8 MB
ENCFF891PIZ.bam bam (alignments) 4.8 GB
ENCFF898NIJ.bam bam (alignments) 4.9 GB
ENCFF909EVS.bigWig bigWig (minus strand signal of all reads) 89.1 MB
ENCFF912KOQ.fastq fastq (reads) 2.5 GB
ENCFF919OFZ.bigWig bigWig (minus strand signal of all reads) 89.1 MB
ENCFF922CPV.tsv tsv (gene quantifications) 9.4 MB
ENCFF924HHG.bigWig bigWig (plus strand signal of all reads) 81.8 MB
ENCFF951MRL.bigWig bigWig (plus strand signal of unique reads) 68.2 MB
ENCFF963NJB.bigWig bigWig (plus strand signal of unique reads) 80.7 MB
ENCFF963RHA.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF966GVL.tsv tsv (transcript quantifications) 27.3 MB
ENCFF971RTS.bigWig bigWig (plus strand signal of all reads) 89.9 MB
ENCFF974ZUA.bam bam (transcriptome alignments) 6.6 GB
ENCFF975HIX.bigWig bigWig (plus strand signal of all reads) 83.3 MB
ENCFF986QVI.bam bam (alignments) 4.0 GB
ENCFF989CCV.bigWig bigWig (plus strand signal of unique reads) 67.2 MB
ENCSR820ROH ENCSR · via encode_api

shRNA knockdown against SERBP1 in HepG2 cells followed by RNA-seq. (SERBP1_BGHLV16)

Homo sapiens

92 data files
FileTypeSize
ENCFF003EJT.bigWig bigWig (plus strand signal of unique reads) 76.1 MB
ENCFF027KRA.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF031COG.bigWig bigWig (minus strand signal of all reads) 66.7 MB
ENCFF048WMF.bam bam (alignments) 4.3 GB
ENCFF049KUX.bigWig bigWig (minus strand signal of unique reads) 74.1 MB
ENCFF056ZIW.bigWig bigWig (minus strand signal of all reads) 82.6 MB
ENCFF058YEB.bigWig bigWig (minus strand signal of unique reads) 60.0 MB
ENCFF064WDB.tsv tsv (gene quantifications) 9.4 MB
ENCFF083UHP.tsv tsv (transcript quantifications) 25.3 MB
ENCFF101JED.bigWig bigWig (plus strand signal of unique reads) 61.7 MB
ENCFF122REZ.tsv tsv (transcript quantifications) 27.2 MB
ENCFF132TNI.bigWig bigWig (minus strand signal of all reads) 82.3 MB
ENCFF141UAS.bigWig bigWig (plus strand signal of unique reads) 76.2 MB
ENCFF142WOO.bigWig bigWig (minus strand signal of unique reads) 70.1 MB
ENCFF171XGJ.bam bam (alignments) 3.4 GB
ENCFF173RQJ.bigWig bigWig (minus strand signal of all reads) 66.7 MB
ENCFF176ADL.bam bam (transcriptome alignments) 4.9 GB
ENCFF181FFP.bigWig bigWig (minus strand signal of unique reads) 53.4 MB
ENCFF198RDP.bigWig bigWig (minus strand signal of unique reads) 56.8 MB
ENCFF213FGU.tsv tsv (gene quantifications) 9.1 MB
ENCFF213TAQ.bigWig bigWig (plus strand signal of unique reads) 71.6 MB
ENCFF215UXQ.bigWig bigWig (minus strand signal of unique reads) 59.4 MB
ENCFF217XPV.bam bam (alignments) 3.5 GB
ENCFF222FOZ.bigWig bigWig (minus strand signal of all reads) 66.3 MB
ENCFF239NTR.bigWig bigWig (plus strand signal of unique reads) 61.7 MB
ENCFF249UDR.bigWig bigWig (plus strand signal of all reads) 60.8 MB
ENCFF256VYT.bam bam (alignments) 5.2 GB
ENCFF265MXN.bigWig bigWig (minus strand signal of unique reads) 60.0 MB
ENCFF268NFX.fastq fastq (reads) 3.0 GB
ENCFF270XEK.bigWig bigWig (minus strand signal of all reads) 74.7 MB
ENCFF271CMR.bigWig bigWig (plus strand signal of unique reads) 58.4 MB
ENCFF276JML.tsv tsv (transcript quantifications) 27.3 MB
ENCFF278ONX.bigWig bigWig (minus strand signal of all reads) 72.4 MB
ENCFF278WPT.bigWig bigWig (plus strand signal of all reads) 83.7 MB
ENCFF279GQF.tar tar (differential splicing quantifications) 2.9 MB
ENCFF283GME.bigWig bigWig (minus strand signal of all reads) 59.6 MB
ENCFF284BRW.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF296HGM.bigWig bigWig (plus strand signal of all reads) 68.0 MB
ENCFF337HBK.bam bam (alignments) 3.5 GB
ENCFF343VPW.bigWig bigWig (plus strand signal of all reads) 58.2 MB
ENCFF352BWV.tsv tsv (gene quantifications) 9.4 MB
ENCFF357KNR.bigWig bigWig (plus strand signal of all reads) 84.2 MB
ENCFF368UIU.tsv tsv (gene quantifications) 10.4 MB
ENCFF377TUY.tsv tsv (transcript quantifications) 29.8 MB
ENCFF399GRJ.tsv tsv (transcript quantifications) 24.9 MB
ENCFF401WKY.bigWig bigWig (plus strand signal of all reads) 84.1 MB
ENCFF416DDY.tsv tsv (differential expression quantifications) 1.8 MB
ENCFF425ZHL.tar tar (differential splicing quantifications) 13.4 MB
ENCFF459VBK.bam bam (alignments) 4.3 GB
ENCFF468UYF.bigWig bigWig (minus strand signal of unique reads) 56.4 MB
ENCFF509FTQ.tsv tsv (differential expression quantifications) 4.2 MB
ENCFF523ESM.bigWig bigWig (plus strand signal of unique reads) 55.1 MB
ENCFF527OSK.tar tar (differential splicing quantifications) 3.3 MB
ENCFF533HBX.bigWig bigWig (minus strand signal of all reads) 56.9 MB
ENCFF544PHO.bigWig bigWig (plus strand signal of all reads) 76.3 MB
ENCFF548ZMV.bigWig bigWig (plus strand signal of unique reads) 61.0 MB
ENCFF567TYM.bigWig bigWig (plus strand signal of all reads) 62.0 MB
ENCFF583VHR.bigWig bigWig (minus strand signal of unique reads) 69.8 MB
ENCFF585KFZ.bam bam (alignments) 2.9 GB
ENCFF597JPS.bam bam (transcriptome alignments) 6.6 GB
ENCFF602CDV.fastq fastq (reads) 2.0 GB
ENCFF608LOF.tsv tsv (transcript quantifications) 29.8 MB
ENCFF636OQE.fastq fastq (reads) 2.9 GB
ENCFF665MGA.tsv tsv (gene quantifications) 9.1 MB
ENCFF670IQK.bam bam (alignments) 2.9 GB
ENCFF674ZQN.bam bam (alignments) 5.1 GB
ENCFF675SLA.bigWig bigWig (minus strand signal of unique reads) 74.2 MB
ENCFF704WTA.bam bam (alignments) 4.3 GB
ENCFF708HTK.bigWig bigWig (plus strand signal of unique reads) 72.1 MB
ENCFF717ZDU.bigWig bigWig (plus strand signal of all reads) 67.5 MB
ENCFF719GNU.tsv tsv (transcript quantifications) 24.9 MB
ENCFF723HCT.bigWig bigWig (plus strand signal of unique reads) 76.2 MB
ENCFF730GNO.bigWig bigWig (plus strand signal of all reads) 76.1 MB
ENCFF748IVN.bam bam (transcriptome alignments) 7.4 GB
ENCFF749IMK.bigWig bigWig (plus strand signal of all reads) 74.0 MB
ENCFF758OYT.bigWig bigWig (plus strand signal of unique reads) 69.6 MB
ENCFF793EOT.bam bam (alignments) 5.2 GB
ENCFF826BHI.bigWig bigWig (plus strand signal of unique reads) 57.9 MB
ENCFF854QSI.bigWig bigWig (minus strand signal of all reads) 74.8 MB
ENCFF869BPS.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF902RUU.bigWig bigWig (plus strand signal of all reads) 68.0 MB
ENCFF936XCB.bigWig bigWig (minus strand signal of all reads) 82.5 MB
ENCFF943GAY.bigWig bigWig (minus strand signal of unique reads) 74.1 MB
ENCFF947EVL.bam bam (transcriptome alignments) 6.5 GB
ENCFF960ZLI.bigWig bigWig (minus strand signal of all reads) 60.7 MB
ENCFF961SEC.bam bam (alignments) 2.9 GB
ENCFF962VQY.bigWig bigWig (minus strand signal of unique reads) 67.6 MB
ENCFF973CPK.bam bam (transcriptome alignments) 4.3 GB
ENCFF978MWB.tsv tsv (gene quantifications) 10.4 MB
ENCFF978XAG.fastq fastq (reads) 1.9 GB
ENCFF991KIN.bam bam (transcriptome alignments) 4.3 GB
ENCFF997KRK.tsv tsv (transcript quantifications) 25.3 MB
ENCSR113PYX ENCSR · via encode_api

RNA-seq on K562 cells treated with an shRNA knockdown against CNOT7. (CNOT7_BGKLV24_B)

Homo sapiens

92 data files
FileTypeSize
ENCFF035FJJ.bigWig bigWig (minus strand signal of unique reads) 100.1 MB
ENCFF044LDC.bigWig bigWig (plus strand signal of all reads) 103.3 MB
ENCFF058VFS.bigWig bigWig (minus strand signal of unique reads) 115.8 MB
ENCFF060FLO.bigWig bigWig (plus strand signal of all reads) 120.3 MB
ENCFF065GFX.tsv tsv (gene quantifications) 9.5 MB
ENCFF075OSB.tsv tsv (differential expression quantifications) 1.8 MB
ENCFF083PMV.bam bam (alignments) 8.4 GB
ENCFF111OXV.bigWig bigWig (plus strand signal of unique reads) 96.6 MB
ENCFF122HKS.tsv tsv (gene quantifications) 10.4 MB
ENCFF126DKP.bam bam (alignments) 6.8 GB
ENCFF134VJI.bigWig bigWig (minus strand signal of all reads) 118.0 MB
ENCFF136BXQ.bigWig bigWig (plus strand signal of all reads) 117.6 MB
ENCFF141OWL.bigWig bigWig (minus strand signal of unique reads) 100.0 MB
ENCFF141VJA.bigWig bigWig (minus strand signal of all reads) 113.6 MB
ENCFF149RBB.bigWig bigWig (minus strand signal of all reads) 132.0 MB
ENCFF165ZCJ.bigWig bigWig (plus strand signal of unique reads) 102.7 MB
ENCFF188YAY.bigWig bigWig (minus strand signal of all reads) 132.0 MB
ENCFF225COR.bigWig bigWig (plus strand signal of all reads) 117.7 MB
ENCFF228RQH.bigWig bigWig (plus strand signal of unique reads) 110.3 MB
ENCFF234YXY.bam bam (transcriptome alignments) 9.0 GB
ENCFF244SIY.bigWig bigWig (plus strand signal of unique reads) 91.2 MB
ENCFF247BKO.bigWig bigWig (minus strand signal of unique reads) 116.1 MB
ENCFF259DJS.bam bam (alignments) 5.9 GB
ENCFF262WIS.tar tar (differential splicing quantifications) 5.3 MB
ENCFF265PUP.bam bam (alignments) 6.8 GB
ENCFF277UEI.bigWig bigWig (plus strand signal of unique reads) 118.5 MB
ENCFF318YTY.bigWig bigWig (minus strand signal of all reads) 115.9 MB
ENCFF341ACV.bigWig bigWig (plus strand signal of unique reads) 107.0 MB
ENCFF345XRH.bam bam (alignments) 8.4 GB
ENCFF350KGF.bam bam (transcriptome alignments) 9.3 GB
ENCFF362PZK.bigWig bigWig (plus strand signal of unique reads) 119.0 MB
ENCFF362TIY.bam bam (transcriptome alignments) 7.9 GB
ENCFF365QTS.tsv tsv (gene quantifications) 9.5 MB
ENCFF377DWQ.bam bam (transcriptome alignments) 9.3 GB
ENCFF385IKN.tsv tsv (transcript quantifications) 25.4 MB
ENCFF390WRI.bigWig bigWig (plus strand signal of all reads) 99.9 MB
ENCFF402VCW.bigWig bigWig (plus strand signal of unique reads) 111.6 MB
ENCFF406CTA.bigWig bigWig (minus strand signal of all reads) 101.2 MB
ENCFF441CTQ.bigWig bigWig (minus strand signal of unique reads) 103.8 MB
ENCFF447UTZ.tsv tsv (transcript quantifications) 25.4 MB
ENCFF458QJR.fastq fastq (reads) 4.6 GB
ENCFF480VHY.fastq fastq (reads) 4.0 GB
ENCFF486CCR.bigWig bigWig (minus strand signal of all reads) 114.2 MB
ENCFF497HJQ.tsv tsv (transcript quantifications) 27.4 MB
ENCFF527ZLY.bigWig bigWig (plus strand signal of unique reads) 94.5 MB
ENCFF534OQT.bigWig bigWig (plus strand signal of all reads) 132.2 MB
ENCFF539LNO.bam bam (transcriptome alignments) 7.9 GB
ENCFF561MMT.tsv tsv (transcript quantifications) 29.9 MB
ENCFF565ZLX.bigWig bigWig (minus strand signal of unique reads) 94.0 MB
ENCFF580UPN.bigWig bigWig (minus strand signal of unique reads) 108.6 MB
ENCFF581RSV.bigWig bigWig (plus strand signal of unique reads) 118.9 MB
ENCFF582HTV.bigWig bigWig (minus strand signal of all reads) 101.0 MB
ENCFF599CAR.tsv tsv (gene quantifications) 9.1 MB
ENCFF602DDZ.bam bam (alignments) 7.1 GB
ENCFF605QMQ.fastq fastq (reads) 4.6 GB
ENCFF625FFW.bigWig bigWig (plus strand signal of unique reads) 102.3 MB
ENCFF659GQG.fastq fastq (reads) 4.0 GB
ENCFF667BYI.bigWig bigWig (plus strand signal of unique reads) 102.6 MB
ENCFF698FER.tsv tsv (transcript quantifications) 25.0 MB
ENCFF705BZM.bam bam (alignments) 6.9 GB
ENCFF705YTE.bam bam (transcriptome alignments) 10.6 GB
ENCFF718OHA.bigWig bigWig (minus strand signal of all reads) 130.4 MB
ENCFF730WCW.bigWig bigWig (plus strand signal of all reads) 133.7 MB
ENCFF742HKG.bigWig bigWig (plus strand signal of all reads) 133.7 MB
ENCFF749NCC.bam bam (alignments) 5.9 GB
ENCFF752CRL.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF759MWP.tsv tsv (differential expression quantifications) 2.0 MB
ENCFF776MJG.bigWig bigWig (plus strand signal of all reads) 117.6 MB
ENCFF779HMD.tsv tsv (gene quantifications) 10.4 MB
ENCFF779OXR.bigWig bigWig (minus strand signal of unique reads) 115.6 MB
ENCFF802JOO.bam bam (alignments) 5.9 GB
ENCFF803SRI.tar tar (differential splicing quantifications) 16.4 MB
ENCFF804BLT.bigWig bigWig (minus strand signal of all reads) 115.9 MB
ENCFF834BFC.tar tar (differential splicing quantifications) 4.3 MB
ENCFF840IFQ.bigWig bigWig (plus strand signal of all reads) 115.9 MB
ENCFF849HDT.bigWig bigWig (plus strand signal of all reads) 102.4 MB
ENCFF860IHC.bigWig bigWig (minus strand signal of unique reads) 88.5 MB
ENCFF864TFD.tsv tsv (transcript quantifications) 27.4 MB
ENCFF865LWH.tsv tsv (gene quantifications) 9.1 MB
ENCFF870AXX.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF878LAC.bam bam (alignments) 7.2 GB
ENCFF883YGK.tsv tsv (transcript quantifications) 29.9 MB
ENCFF892TML.bigWig bigWig (minus strand signal of all reads) 97.8 MB
ENCFF900KDZ.bam bam (alignments) 7.2 GB
ENCFF933LVU.bigWig bigWig (minus strand signal of unique reads) 99.5 MB
ENCFF935XYX.bigWig bigWig (minus strand signal of unique reads) 92.2 MB
ENCFF937ARQ.bigWig bigWig (minus strand signal of all reads) 116.2 MB
ENCFF939ISO.bigWig bigWig (plus strand signal of all reads) 116.0 MB
ENCFF941HMA.tsv tsv (differential expression quantifications) 4.5 MB
ENCFF953ZKL.bigWig bigWig (minus strand signal of unique reads) 107.8 MB
ENCFF981HGA.tsv tsv (transcript quantifications) 25.0 MB
ENCFF997ZLP.bam bam (alignments) 8.2 GB
ENCSR281KCL ENCSR · via encode_api

RNA-seq on HepG2 cells treated with an shRNA knockdown against SUPT6H. (SUPT6H_BGHLV30)

Homo sapiens

92 data files
FileTypeSize
ENCFF025TPQ.bigWig bigWig (plus strand signal of unique reads) 72.3 MB
ENCFF026NCX.bam bam (transcriptome alignments) 6.7 GB
ENCFF029LGO.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF041AVL.bam bam (alignments) 3.1 GB
ENCFF043DOD.bigWig bigWig (minus strand signal of all reads) 73.0 MB
ENCFF080OKW.tar tar (differential splicing quantifications) 3.6 MB
ENCFF082YSB.bigWig bigWig (minus strand signal of unique reads) 55.5 MB
ENCFF101CVU.bigWig bigWig (minus strand signal of all reads) 61.8 MB
ENCFF103CZK.bam bam (alignments) 4.8 GB
ENCFF120VMQ.bam bam (alignments) 2.5 GB
ENCFF125WGX.tsv tsv (transcript quantifications) 25.3 MB
ENCFF128EJQ.bigWig bigWig (plus strand signal of unique reads) 57.0 MB
ENCFF143GBD.tar tar (differential splicing quantifications) 3.0 MB
ENCFF156CBD.bam bam (alignments) 2.5 GB
ENCFF168NHC.tsv tsv (transcript quantifications) 29.8 MB
ENCFF179AAM.bam bam (alignments) 3.0 GB
ENCFF192HFK.bam bam (alignments) 3.9 GB
ENCFF192IGB.bigWig bigWig (plus strand signal of all reads) 63.5 MB
ENCFF208XMN.bigWig bigWig (minus strand signal of all reads) 81.2 MB
ENCFF211VSQ.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF213BVO.bigWig bigWig (minus strand signal of all reads) 55.3 MB
ENCFF213HKO.bigWig bigWig (minus strand signal of all reads) 82.0 MB
ENCFF214XEE.bam bam (alignments) 2.5 GB
ENCFF223DAI.bigWig bigWig (plus strand signal of unique reads) 70.4 MB
ENCFF223FLL.tsv tsv (transcript quantifications) 29.9 MB
ENCFF226PJF.bigWig bigWig (minus strand signal of unique reads) 53.3 MB
ENCFF240ANK.fastq fastq (reads) 2.8 GB
ENCFF265PZV.bigWig bigWig (minus strand signal of all reads) 62.4 MB
ENCFF286DNC.tsv tsv (gene quantifications) 9.5 MB
ENCFF287EKA.bigWig bigWig (plus strand signal of unique reads) 54.7 MB
ENCFF306AMY.bigWig bigWig (plus strand signal of unique reads) 57.6 MB
ENCFF323JFC.bam bam (alignments) 3.8 GB
ENCFF332WGI.tsv tsv (gene quantifications) 9.1 MB
ENCFF344VNM.bam bam (alignments) 3.1 GB
ENCFF344ZDZ.bigWig bigWig (plus strand signal of all reads) 58.3 MB
ENCFF386SGY.bigWig bigWig (minus strand signal of all reads) 62.3 MB
ENCFF387ASY.bam bam (alignments) 4.6 GB
ENCFF390VJF.bigWig bigWig (minus strand signal of unique reads) 73.6 MB
ENCFF391PTQ.bigWig bigWig (minus strand signal of unique reads) 53.3 MB
ENCFF410HKA.bigWig bigWig (minus strand signal of unique reads) 70.4 MB
ENCFF410QQP.bigWig bigWig (plus strand signal of all reads) 76.9 MB
ENCFF414LLF.bigWig bigWig (plus strand signal of all reads) 75.3 MB
ENCFF446KXJ.bigWig bigWig (minus strand signal of all reads) 82.0 MB
ENCFF447MXM.bigWig bigWig (minus strand signal of unique reads) 56.2 MB
ENCFF448JQT.tsv tsv (transcript quantifications) 24.9 MB
ENCFF451CCG.bam bam (transcriptome alignments) 7.7 GB
ENCFF465PFF.bam bam (transcriptome alignments) 4.3 GB
ENCFF474NXA.bigWig bigWig (minus strand signal of all reads) 74.0 MB
ENCFF515ACG.tsv tsv (transcript quantifications) 27.4 MB
ENCFF517QNP.bam bam (alignments) 3.8 GB
ENCFF529CBM.bigWig bigWig (plus strand signal of unique reads) 75.2 MB
ENCFF531SMO.bigWig bigWig (plus strand signal of all reads) 62.8 MB
ENCFF535EWI.bam bam (transcriptome alignments) 4.9 GB
ENCFF595DDW.bigWig bigWig (minus strand signal of all reads) 56.5 MB
ENCFF616XCH.bigWig bigWig (minus strand signal of unique reads) 73.2 MB
ENCFF630XGP.fastq fastq (reads) 1.8 GB
ENCFF640OBL.bigWig bigWig (plus strand signal of unique reads) 52.6 MB
ENCFF667ZTR.bigWig bigWig (plus strand signal of unique reads) 75.1 MB
ENCFF677YSU.tsv tsv (gene quantifications) 9.4 MB
ENCFF685LUK.bigWig bigWig (minus strand signal of unique reads) 51.0 MB
ENCFF689RLE.tar tar (differential splicing quantifications) 15.0 MB
ENCFF692CVN.bigWig bigWig (minus strand signal of unique reads) 73.3 MB
ENCFF695YEI.tsv tsv (transcript quantifications) 27.2 MB
ENCFF696LVL.bigWig bigWig (plus strand signal of unique reads) 71.5 MB
ENCFF717EMW.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF724ATC.bigWig bigWig (minus strand signal of all reads) 57.3 MB
ENCFF724ZDB.fastq fastq (reads) 1.8 GB
ENCFF730PAR.bigWig bigWig (plus strand signal of all reads) 82.5 MB
ENCFF747LIL.bigWig bigWig (minus strand signal of unique reads) 56.2 MB
ENCFF748VDD.bigWig bigWig (plus strand signal of unique reads) 75.5 MB
ENCFF764MWF.bigWig bigWig (plus strand signal of all reads) 56.5 MB
ENCFF765ULI.bam bam (transcriptome alignments) 6.8 GB
ENCFF776FNB.bigWig bigWig (plus strand signal of unique reads) 54.6 MB
ENCFF783KPS.fastq fastq (reads) 2.8 GB
ENCFF808SHF.bigWig bigWig (minus strand signal of all reads) 75.5 MB
ENCFF812TIU.bigWig bigWig (plus strand signal of all reads) 83.5 MB
ENCFF820UBF.tsv tsv (gene quantifications) 9.1 MB
ENCFF827PUZ.bam bam (transcriptome alignments) 4.3 GB
ENCFF851QEH.bigWig bigWig (plus strand signal of all reads) 74.6 MB
ENCFF854LPS.tsv tsv (transcript quantifications) 25.4 MB
ENCFF870WHN.bam bam (alignments) 4.8 GB
ENCFF872UWK.bigWig bigWig (plus strand signal of all reads) 63.5 MB
ENCFF884OVF.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF885PBX.bigWig bigWig (plus strand signal of all reads) 83.5 MB
ENCFF919FYE.tsv tsv (gene quantifications) 10.4 MB
ENCFF927THC.bigWig bigWig (minus strand signal of unique reads) 69.8 MB
ENCFF929WZQ.bigWig bigWig (plus strand signal of unique reads) 57.6 MB
ENCFF956WYA.tsv tsv (gene quantifications) 10.4 MB
ENCFF965OPD.tsv tsv (transcript quantifications) 25.0 MB
ENCFF980AML.tsv tsv (differential expression quantifications) 4.3 MB
ENCFF987JDD.bigWig bigWig (minus strand signal of unique reads) 68.2 MB
ENCFF995OHK.bigWig bigWig (plus strand signal of all reads) 57.5 MB
ENCSR047VPW ENCSR · via encode_api

shRNA knockdown against FAM120A in HepG2 cells followed by RNA-seq. (FAM120A_BGHLV16)

Homo sapiens

92 data files
FileTypeSize
ENCFF016OUV.bigWig bigWig (minus strand signal of unique reads) 56.8 MB
ENCFF020VXY.bigWig bigWig (minus strand signal of unique reads) 59.7 MB
ENCFF053DXH.bigWig bigWig (minus strand signal of all reads) 57.0 MB
ENCFF058PEP.bigWig bigWig (plus strand signal of all reads) 63.6 MB
ENCFF063SEZ.bigWig bigWig (minus strand signal of all reads) 68.7 MB
ENCFF064FXT.bigWig bigWig (plus strand signal of all reads) 67.9 MB
ENCFF066PEV.bigWig bigWig (minus strand signal of all reads) 68.0 MB
ENCFF075GLZ.bigWig bigWig (minus strand signal of unique reads) 58.7 MB
ENCFF103COC.tar tar (differential splicing quantifications) 13.6 MB
ENCFF139IZN.bam bam (transcriptome alignments) 4.5 GB
ENCFF141RQB.bigWig bigWig (minus strand signal of unique reads) 59.3 MB
ENCFF143FVG.bam bam (alignments) 3.0 GB
ENCFF153AHR.bam bam (alignments) 3.1 GB
ENCFF163TIF.bigWig bigWig (plus strand signal of unique reads) 57.0 MB
ENCFF192LGB.bigWig bigWig (minus strand signal of all reads) 63.3 MB
ENCFF194ASH.tsv tsv (gene quantifications) 9.4 MB
ENCFF232JSA.bigWig bigWig (minus strand signal of unique reads) 59.7 MB
ENCFF259KEJ.tar tar (differential splicing quantifications) 2.7 MB
ENCFF308BOL.bam bam (transcriptome alignments) 4.5 GB
ENCFF326FXK.bigWig bigWig (plus strand signal of unique reads) 58.4 MB
ENCFF327PBI.fastq fastq (reads) 1.9 GB
ENCFF328DWJ.tsv tsv (transcript quantifications) 27.2 MB
ENCFF338PHG.bam bam (alignments) 3.1 GB
ENCFF338YOR.bigWig bigWig (minus strand signal of unique reads) 58.3 MB
ENCFF344KJB.bigWig bigWig (plus strand signal of unique reads) 60.3 MB
ENCFF357QBW.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF370AVU.bam bam (transcriptome alignments) 3.9 GB
ENCFF383RAK.bigWig bigWig (minus strand signal of unique reads) 61.6 MB
ENCFF384BOD.bigWig bigWig (plus strand signal of all reads) 69.9 MB
ENCFF389JFL.bigWig bigWig (minus strand signal of all reads) 66.5 MB
ENCFF391JCY.bigWig bigWig (plus strand signal of all reads) 70.0 MB
ENCFF392DAQ.bigWig bigWig (plus strand signal of all reads) 61.5 MB
ENCFF405ERT.bigWig bigWig (plus strand signal of all reads) 61.4 MB
ENCFF412GXB.tsv tsv (gene quantifications) 9.1 MB
ENCFF420NEL.bam bam (transcriptome alignments) 4.5 GB
ENCFF426WTS.bigWig bigWig (minus strand signal of all reads) 60.1 MB
ENCFF441QRA.tsv tsv (gene quantifications) 10.4 MB
ENCFF445OWN.tsv tsv (transcript quantifications) 29.8 MB
ENCFF452ACZ.tsv tsv (gene quantifications) 9.1 MB
ENCFF457GQX.bigWig bigWig (plus strand signal of all reads) 66.3 MB
ENCFF459FNF.bam bam (alignments) 2.9 GB
ENCFF466IXU.bigWig bigWig (plus strand signal of unique reads) 54.8 MB
ENCFF467WJS.bigWig bigWig (minus strand signal of all reads) 60.3 MB
ENCFF482PKY.bigWig bigWig (plus strand signal of unique reads) 61.4 MB
ENCFF483SIA.tsv tsv (transcript quantifications) 24.9 MB
ENCFF514JNF.bigWig bigWig (minus strand signal of unique reads) 62.1 MB
ENCFF518AXG.bigWig bigWig (minus strand signal of unique reads) 56.4 MB
ENCFF524DOP.bam bam (alignments) 2.9 GB
ENCFF527ASW.bigWig bigWig (plus strand signal of unique reads) 57.9 MB
ENCFF531XDU.tsv tsv (transcript quantifications) 25.3 MB
ENCFF532DNA.tsv tsv (transcript quantifications) 29.8 MB
ENCFF532UPZ.tar tar (differential splicing quantifications) 3.1 MB
ENCFF535HRU.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF552IED.bigWig bigWig (minus strand signal of all reads) 65.1 MB
ENCFF555WPJ.bigWig bigWig (plus strand signal of unique reads) 59.7 MB
ENCFF569LUX.bigWig bigWig (plus strand signal of unique reads) 63.6 MB
ENCFF588YRM.bigWig bigWig (minus strand signal of all reads) 66.5 MB
ENCFF589QCZ.bigWig bigWig (minus strand signal of unique reads) 53.2 MB
ENCFF626RSG.bigWig bigWig (plus strand signal of all reads) 61.2 MB
ENCFF646FFK.bigWig bigWig (plus strand signal of unique reads) 63.9 MB
ENCFF655HSR.bam bam (alignments) 2.9 GB
ENCFF658JVY.bigWig bigWig (plus strand signal of unique reads) 63.2 MB
ENCFF681TRC.bam bam (alignments) 2.6 GB
ENCFF689DCI.bigWig bigWig (plus strand signal of all reads) 58.2 MB
ENCFF745XDE.bigWig bigWig (minus strand signal of all reads) 62.5 MB
ENCFF754GHW.bam bam (alignments) 3.5 GB
ENCFF763XMD.bam bam (alignments) 2.6 GB
ENCFF769NOZ.tsv tsv (transcript quantifications) 25.3 MB
ENCFF776ZUG.bigWig bigWig (minus strand signal of unique reads) 62.0 MB
ENCFF784QKI.bam bam (alignments) 3.4 GB
ENCFF799BCT.bigWig bigWig (minus strand signal of all reads) 68.6 MB
ENCFF803YKO.bigWig bigWig (minus strand signal of unique reads) 55.3 MB
ENCFF804LLI.bigWig bigWig (plus strand signal of all reads) 67.8 MB
ENCFF805XSC.tsv tsv (transcript quantifications) 24.9 MB
ENCFF818AHB.bam bam (transcriptome alignments) 4.0 GB
ENCFF821BEX.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF829ZSL.tsv tsv (differential expression quantifications) 1.8 MB
ENCFF832CCR.tsv tsv (transcript quantifications) 27.3 MB
ENCFF841SLY.fastq fastq (reads) 1.7 GB
ENCFF844XSA.fastq fastq (reads) 2.0 GB
ENCFF845TFX.fastq fastq (reads) 1.7 GB
ENCFF865PZB.bigWig bigWig (plus strand signal of all reads) 64.7 MB
ENCFF870GDH.bigWig bigWig (minus strand signal of all reads) 59.9 MB
ENCFF878OVD.bigWig bigWig (plus strand signal of unique reads) 61.4 MB
ENCFF889HNW.tsv tsv (gene quantifications) 9.4 MB
ENCFF890MZU.bigWig bigWig (plus strand signal of all reads) 69.1 MB
ENCFF917XKG.bam bam (transcriptome alignments) 5.0 GB
ENCFF930KSJ.bam bam (alignments) 3.5 GB
ENCFF932WWM.tsv tsv (differential expression quantifications) 4.2 MB
ENCFF934VFO.tsv tsv (gene quantifications) 10.4 MB
ENCFF940NRF.bigWig bigWig (plus strand signal of unique reads) 61.0 MB
ENCFF976BIV.bam bam (alignments) 2.6 GB
ENCSR741YCA ENCSR · via encode_api

RNA-seq on HepG2 cells treated with an shRNA knockdown against TBRG4. (TBRG4_BGHLV27)

Homo sapiens

92 data files
FileTypeSize
ENCFF011TTJ.tsv tsv (transcript quantifications) 24.9 MB
ENCFF015PGR.bigWig bigWig (plus strand signal of all reads) 83.3 MB
ENCFF043OZL.bigWig bigWig (minus strand signal of all reads) 81.3 MB
ENCFF060JOS.bigWig bigWig (plus strand signal of all reads) 88.9 MB
ENCFF074FUY.bigWig bigWig (plus strand signal of unique reads) 91.1 MB
ENCFF088YZA.bam bam (alignments) 3.9 GB
ENCFF091CHI.fastq fastq (reads) 2.8 GB
ENCFF097BWY.bigWig bigWig (minus strand signal of all reads) 89.9 MB
ENCFF098HRY.bigWig bigWig (plus strand signal of all reads) 85.5 MB
ENCFF100GII.bam bam (alignments) 3.9 GB
ENCFF104DZN.bigWig bigWig (minus strand signal of all reads) 83.6 MB
ENCFF114ZAD.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF121TSO.fastq fastq (reads) 3.3 GB
ENCFF137JPM.bam bam (alignments) 4.9 GB
ENCFF138PSI.bam bam (alignments) 4.9 GB
ENCFF143OCA.bigWig bigWig (minus strand signal of all reads) 90.6 MB
ENCFF166FWU.bigWig bigWig (minus strand signal of unique reads) 80.9 MB
ENCFF177ZUM.bigWig bigWig (minus strand signal of unique reads) 77.3 MB
ENCFF180UQC.tsv tsv (gene quantifications) 10.4 MB
ENCFF185FPR.tsv tsv (transcript quantifications) 27.4 MB
ENCFF194ALM.tsv tsv (transcript quantifications) 25.4 MB
ENCFF195UUR.bigWig bigWig (minus strand signal of unique reads) 83.8 MB
ENCFF200BGV.tsv tsv (transcript quantifications) 29.8 MB
ENCFF202UGA.bam bam (transcriptome alignments) 7.5 GB
ENCFF244HVU.bigWig bigWig (plus strand signal of unique reads) 83.9 MB
ENCFF274OHY.bigWig bigWig (plus strand signal of all reads) 99.8 MB
ENCFF307JMP.bigWig bigWig (plus strand signal of all reads) 91.4 MB
ENCFF312TDU.bigWig bigWig (plus strand signal of all reads) 83.9 MB
ENCFF328RQK.bam bam (alignments) 5.5 GB
ENCFF336MRQ.tar tar (differential splicing quantifications) 3.6 MB
ENCFF346IVW.tsv tsv (differential expression quantifications) 4.3 MB
ENCFF353SXT.bigWig bigWig (plus strand signal of all reads) 92.3 MB
ENCFF379AIH.bigWig bigWig (minus strand signal of all reads) 89.7 MB
ENCFF386FPV.bigWig bigWig (minus strand signal of unique reads) 88.8 MB
ENCFF398LJI.tsv tsv (gene quantifications) 9.5 MB
ENCFF398PGF.tsv tsv (gene quantifications) 9.5 MB
ENCFF413BNF.fastq fastq (reads) 2.8 GB
ENCFF439RCJ.tsv tsv (transcript quantifications) 27.4 MB
ENCFF448TKO.bigWig bigWig (plus strand signal of unique reads) 90.4 MB
ENCFF474DJV.fastq fastq (reads) 3.2 GB
ENCFF484EXR.bigWig bigWig (minus strand signal of unique reads) 88.1 MB
ENCFF487YID.tsv tsv (transcript quantifications) 29.9 MB
ENCFF489GSA.bigWig bigWig (plus strand signal of unique reads) 83.2 MB
ENCFF490ZXK.bigWig bigWig (minus strand signal of unique reads) 81.6 MB
ENCFF496DOM.bam bam (alignments) 4.8 GB
ENCFF499DTP.bigWig bigWig (minus strand signal of all reads) 82.3 MB
ENCFF516UUV.tsv tsv (transcript quantifications) 25.0 MB
ENCFF522LUD.bam bam (alignments) 4.7 GB
ENCFF526XET.bigWig bigWig (minus strand signal of unique reads) 88.8 MB
ENCFF536KIU.bam bam (transcriptome alignments) 8.5 GB
ENCFF541RHJ.bigWig bigWig (minus strand signal of unique reads) 81.5 MB
ENCFF549DMC.bam bam (transcriptome alignments) 6.6 GB
ENCFF557WZU.bam bam (alignments) 4.5 GB
ENCFF569FJE.bam bam (alignments) 4.5 GB
ENCFF593BDS.bigWig bigWig (minus strand signal of unique reads) 75.3 MB
ENCFF609OOB.bam bam (alignments) 4.0 GB
ENCFF626MRS.bigWig bigWig (minus strand signal of all reads) 90.6 MB
ENCFF646MNC.bam bam (transcriptome alignments) 6.6 GB
ENCFF667ECN.tar tar (differential splicing quantifications) 16.5 MB
ENCFF671QZU.tsv tsv (differential expression quantifications) 2.0 MB
ENCFF676ZPY.bigWig bigWig (plus strand signal of unique reads) 80.0 MB
ENCFF681VAI.bigWig bigWig (plus strand signal of unique reads) 86.1 MB
ENCFF701CHC.bam bam (alignments) 5.9 GB
ENCFF702XXC.bam bam (alignments) 5.9 GB
ENCFF710GYF.bigWig bigWig (minus strand signal of unique reads) 84.3 MB
ENCFF711CXV.bigWig bigWig (plus strand signal of all reads) 100.3 MB
ENCFF734ESX.bigWig bigWig (plus strand signal of unique reads) 79.4 MB
ENCFF741NSB.bigWig bigWig (minus strand signal of all reads) 98.6 MB
ENCFF754LCV.tsv tsv (differential expression quantifications) 1.8 MB
ENCFF762RSZ.bigWig bigWig (plus strand signal of all reads) 92.3 MB
ENCFF777KKP.bigWig bigWig (plus strand signal of all reads) 91.3 MB
ENCFF788RYH.bigWig bigWig (minus strand signal of all reads) 87.2 MB
ENCFF801MYD.bigWig bigWig (plus strand signal of unique reads) 77.6 MB
ENCFF803UFZ.bigWig bigWig (plus strand signal of unique reads) 83.5 MB
ENCFF808WBS.bigWig bigWig (minus strand signal of unique reads) 77.7 MB
ENCFF821YTN.bigWig bigWig (plus strand signal of unique reads) 83.9 MB
ENCFF824BPG.bigWig bigWig (minus strand signal of all reads) 98.6 MB
ENCFF824FQO.bam bam (transcriptome alignments) 7.6 GB
ENCFF825MDP.bam bam (transcriptome alignments) 7.4 GB
ENCFF827TKR.tsv tsv (gene quantifications) 10.4 MB
ENCFF829KGT.tar tar (differential splicing quantifications) 4.3 MB
ENCFF849PQW.tsv tsv (gene quantifications) 9.1 MB
ENCFF869FKB.bigWig bigWig (minus strand signal of all reads) 98.3 MB
ENCFF869IGH.tsv tsv (transcript quantifications) 25.3 MB
ENCFF869JMS.bigWig bigWig (plus strand signal of all reads) 100.3 MB
ENCFF879QJE.bigWig bigWig (plus strand signal of all reads) 92.7 MB
ENCFF883UKQ.bigWig bigWig (plus strand signal of unique reads) 91.1 MB
ENCFF897SNK.bigWig bigWig (plus strand signal of unique reads) 86.4 MB
ENCFF923QNO.bigWig bigWig (minus strand signal of all reads) 90.9 MB
ENCFF943PTE.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF951ILO.bigWig bigWig (minus strand signal of unique reads) 81.1 MB
ENCFF956JDB.tsv tsv (gene quantifications) 9.1 MB
ENCSR815JDY ENCSR · via encode_api

shRNA knockdown against CSTF2 in HepG2 cells followed by RNA-seq. (CSTF2_BGHLV17)

Homo sapiens

92 data files
FileTypeSize
ENCFF013ALN.bigWig bigWig (minus strand signal of all reads) 56.1 MB
ENCFF015MPZ.bam bam (alignments) 1.8 GB
ENCFF016QXC.bigWig bigWig (minus strand signal of all reads) 56.1 MB
ENCFF025SNN.bigWig bigWig (plus strand signal of all reads) 51.8 MB
ENCFF041FMO.bigWig bigWig (minus strand signal of unique reads) 47.3 MB
ENCFF041YGN.fastq fastq (reads) 1.2 GB
ENCFF053DDR.bigWig bigWig (plus strand signal of unique reads) 52.6 MB
ENCFF069KQO.bigWig bigWig (minus strand signal of all reads) 45.8 MB
ENCFF096GZL.bigWig bigWig (minus strand signal of unique reads) 44.8 MB
ENCFF102ZKG.bam bam (alignments) 2.4 GB
ENCFF105TFE.fastq fastq (reads) 1.3 GB
ENCFF109BDC.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF115UXV.bigWig bigWig (plus strand signal of all reads) 52.9 MB
ENCFF116TYA.bam bam (alignments) 1.8 GB
ENCFF126OAN.bigWig bigWig (plus strand signal of all reads) 48.5 MB
ENCFF139MUF.bigWig bigWig (plus strand signal of unique reads) 48.5 MB
ENCFF149JCW.bigWig bigWig (plus strand signal of unique reads) 52.5 MB
ENCFF153RHE.bigWig bigWig (minus strand signal of all reads) 52.0 MB
ENCFF167VKZ.tsv tsv (differential expression quantifications) 4.2 MB
ENCFF198GTA.bigWig bigWig (plus strand signal of all reads) 57.7 MB
ENCFF214DSZ.bigWig bigWig (plus strand signal of unique reads) 49.5 MB
ENCFF224HTD.bigWig bigWig (plus strand signal of unique reads) 44.2 MB
ENCFF231AAF.tsv tsv (transcript quantifications) 27.2 MB
ENCFF263LUO.bigWig bigWig (minus strand signal of all reads) 51.3 MB
ENCFF264JPY.bam bam (alignments) 2.4 GB
ENCFF274VKO.bigWig bigWig (minus strand signal of unique reads) 50.9 MB
ENCFF277HME.bam bam (transcriptome alignments) 2.6 GB
ENCFF285HRP.bam bam (transcriptome alignments) 2.9 GB
ENCFF286BPA.bam bam (alignments) 2.0 GB
ENCFF296XWF.bigWig bigWig (minus strand signal of all reads) 50.6 MB
ENCFF337WXI.tsv tsv (differential expression quantifications) 1.8 MB
ENCFF364SGK.bigWig bigWig (minus strand signal of unique reads) 45.0 MB
ENCFF368ROD.bigWig bigWig (plus strand signal of unique reads) 48.5 MB
ENCFF387LNP.bam bam (alignments) 2.0 GB
ENCFF396YRR.bigWig bigWig (minus strand signal of unique reads) 47.1 MB
ENCFF403DLN.bigWig bigWig (plus strand signal of unique reads) 47.3 MB
ENCFF406PBI.bam bam (alignments) 1.8 GB
ENCFF415RJM.bam bam (transcriptome alignments) 2.9 GB
ENCFF417RMQ.bigWig bigWig (plus strand signal of unique reads) 48.7 MB
ENCFF441EPY.bigWig bigWig (plus strand signal of all reads) 57.4 MB
ENCFF444MMS.tsv tsv (gene quantifications) 9.1 MB
ENCFF457MEW.tsv tsv (transcript quantifications) 25.2 MB
ENCFF458QMR.bigWig bigWig (plus strand signal of unique reads) 46.1 MB
ENCFF459QSS.bigWig bigWig (minus strand signal of all reads) 52.6 MB
ENCFF461KHH.bigWig bigWig (minus strand signal of all reads) 47.7 MB
ENCFF475YME.bigWig bigWig (plus strand signal of all reads) 53.7 MB
ENCFF485SEN.bigWig bigWig (minus strand signal of unique reads) 51.0 MB
ENCFF492ADI.bam bam (alignments) 2.0 GB
ENCFF515THV.bam bam (transcriptome alignments) 3.3 GB
ENCFF521LQV.tsv tsv (transcript quantifications) 25.2 MB
ENCFF531ZXL.tsv tsv (transcript quantifications) 24.8 MB
ENCFF537UDP.tsv tsv (transcript quantifications) 24.8 MB
ENCFF544LLV.tsv tsv (transcript quantifications) 27.2 MB
ENCFF552SXU.bam bam (alignments) 2.2 GB
ENCFF568ZNU.tsv tsv (gene quantifications) 9.1 MB
ENCFF583VJV.bigWig bigWig (minus strand signal of all reads) 52.5 MB
ENCFF588LTT.tsv tsv (differential expression quantifications) 5.5 MB
ENCFF605VMD.tar tar (differential splicing quantifications) 13.9 MB
ENCFF621SAX.bigWig bigWig (minus strand signal of unique reads) 51.0 MB
ENCFF622YBT.bigWig bigWig (plus strand signal of all reads) 47.0 MB
ENCFF632ENY.tsv tsv (gene quantifications) 10.4 MB
ENCFF638JAB.tsv tsv (transcript quantifications) 29.7 MB
ENCFF642AFY.bigWig bigWig (plus strand signal of unique reads) 52.6 MB
ENCFF642OEV.bigWig bigWig (minus strand signal of unique reads) 47.9 MB
ENCFF663JOL.tsv tsv (gene quantifications) 10.4 MB
ENCFF685BFY.bam bam (transcriptome alignments) 2.9 GB
ENCFF685GWN.tar tar (differential splicing quantifications) 2.7 MB
ENCFF692JVT.bigWig bigWig (minus strand signal of unique reads) 47.5 MB
ENCFF722JVG.fastq fastq (reads) 1.3 GB
ENCFF736PBZ.tsv tsv (gene quantifications) 9.4 MB
ENCFF821VHB.tsv tsv (gene quantifications) 9.4 MB
ENCFF845LIC.bigWig bigWig (plus strand signal of all reads) 53.8 MB
ENCFF855PKC.bigWig bigWig (plus strand signal of unique reads) 49.0 MB
ENCFF856RQD.bigWig bigWig (plus strand signal of unique reads) 46.4 MB
ENCFF857SXV.bigWig bigWig (plus strand signal of all reads) 48.8 MB
ENCFF859RSO.bigWig bigWig (plus strand signal of all reads) 57.4 MB
ENCFF866AHO.bam bam (alignments) 2.4 GB
ENCFF869BNA.tsv tsv (transcript quantifications) 29.7 MB
ENCFF888TNQ.bigWig bigWig (plus strand signal of all reads) 52.6 MB
ENCFF889ASU.bigWig bigWig (plus strand signal of all reads) 50.8 MB
ENCFF908HBG.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF909LAP.fastq fastq (reads) 1.1 GB
ENCFF920JVC.tar tar (differential splicing quantifications) 3.2 MB
ENCFF923CYG.bigWig bigWig (minus strand signal of unique reads) 47.1 MB
ENCFF929UPV.bigWig bigWig (minus strand signal of all reads) 47.3 MB
ENCFF933ECN.bigWig bigWig (minus strand signal of unique reads) 42.7 MB
ENCFF938DQM.bam bam (alignments) 2.1 GB
ENCFF942BCG.bigWig bigWig (minus strand signal of unique reads) 45.7 MB
ENCFF949QWQ.bigWig bigWig (minus strand signal of all reads) 49.5 MB
ENCFF958LPL.bigWig bigWig (minus strand signal of all reads) 56.5 MB
ENCFF998MKL.bam bam (transcriptome alignments) 2.6 GB
ENCFF999SUM.bam bam (alignments) 2.2 GB
ENCSR309HXK ENCSR · via encode_api

shRNA knockdown against TRIM56 in HepG2 cells followed by RNA-seq. (TRIM56-BGHLV20)

Homo sapiens

92 data files
FileTypeSize
ENCFF004OKR.bigWig bigWig (minus strand signal of unique reads) 71.4 MB
ENCFF015AAK.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF055UUX.bam bam (alignments) 3.7 GB
ENCFF072BWA.bam bam (transcriptome alignments) 6.9 GB
ENCFF115BMK.bigWig bigWig (plus strand signal of all reads) 64.4 MB
ENCFF135NUS.bigWig bigWig (minus strand signal of all reads) 63.0 MB
ENCFF143SLN.tsv tsv (transcript quantifications) 25.3 MB
ENCFF146ILX.bigWig bigWig (plus strand signal of unique reads) 73.4 MB
ENCFF147ZFC.bigWig bigWig (plus strand signal of all reads) 72.4 MB
ENCFF172DFO.fastq fastq (reads) 2.4 GB
ENCFF188WKF.bam bam (transcriptome alignments) 6.9 GB
ENCFF189ENP.bigWig bigWig (minus strand signal of all reads) 69.2 MB
ENCFF197PKZ.fastq fastq (reads) 2.8 GB
ENCFF198XOJ.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF202DAN.bam bam (alignments) 4.4 GB
ENCFF214XBM.bigWig bigWig (minus strand signal of unique reads) 58.5 MB
ENCFF223TRB.bigWig bigWig (plus strand signal of unique reads) 60.8 MB
ENCFF229EZY.bigWig bigWig (minus strand signal of unique reads) 59.0 MB
ENCFF234TWZ.tsv tsv (gene quantifications) 9.5 MB
ENCFF243TJV.bam bam (transcriptome alignments) 6.1 GB
ENCFF244OZF.bigWig bigWig (minus strand signal of all reads) 60.5 MB
ENCFF247QKO.tsv tsv (gene quantifications) 10.4 MB
ENCFF250CKO.bigWig bigWig (plus strand signal of all reads) 80.3 MB
ENCFF252CGD.tsv tsv (gene quantifications) 9.4 MB
ENCFF261DNV.bigWig bigWig (minus strand signal of all reads) 78.8 MB
ENCFF284JTF.bigWig bigWig (plus strand signal of all reads) 70.7 MB
ENCFF286XXZ.tsv tsv (transcript quantifications) 24.9 MB
ENCFF289CCS.bam bam (transcriptome alignments) 5.5 GB
ENCFF300APG.bigWig bigWig (minus strand signal of unique reads) 64.7 MB
ENCFF301ZPR.bam bam (alignments) 3.6 GB
ENCFF311IVH.bam bam (alignments) 3.6 GB
ENCFF337XXC.bigWig bigWig (plus strand signal of all reads) 63.8 MB
ENCFF359RCT.bam bam (alignments) 5.2 GB
ENCFF380AZJ.bam bam (alignments) 4.6 GB
ENCFF382ZOH.bam bam (alignments) 5.4 GB
ENCFF387NPY.bigWig bigWig (plus strand signal of unique reads) 58.5 MB
ENCFF393GPZ.bigWig bigWig (minus strand signal of all reads) 69.1 MB
ENCFF396EVW.bigWig bigWig (minus strand signal of all reads) 69.1 MB
ENCFF424EHJ.bigWig bigWig (plus strand signal of unique reads) 68.4 MB
ENCFF448HDX.tar tar (differential splicing quantifications) 15.1 MB
ENCFF460QIH.bigWig bigWig (minus strand signal of all reads) 78.8 MB
ENCFF476YFD.tsv tsv (differential expression quantifications) 4.4 MB
ENCFF490YJH.bigWig bigWig (minus strand signal of all reads) 78.8 MB
ENCFF510QXH.fastq fastq (reads) 3.0 GB
ENCFF513LJK.fastq fastq (reads) 2.3 GB
ENCFF530IHD.bigWig bigWig (plus strand signal of unique reads) 63.9 MB
ENCFF545PQO.bigWig bigWig (plus strand signal of unique reads) 63.9 MB
ENCFF546JWQ.bigWig bigWig (plus strand signal of all reads) 70.0 MB
ENCFF575OVJ.bigWig bigWig (minus strand signal of all reads) 68.6 MB
ENCFF581QKT.bam bam (transcriptome alignments) 7.6 GB
ENCFF583IFB.tsv tsv (transcript quantifications) 24.9 MB
ENCFF594KNY.bigWig bigWig (minus strand signal of unique reads) 56.7 MB
ENCFF596UFT.bigWig bigWig (minus strand signal of all reads) 62.5 MB
ENCFF615GVA.bam bam (alignments) 4.4 GB
ENCFF624OPZ.bigWig bigWig (minus strand signal of unique reads) 67.1 MB
ENCFF630YFA.bigWig bigWig (plus strand signal of unique reads) 63.3 MB
ENCFF634VFB.bigWig bigWig (plus strand signal of all reads) 73.8 MB
ENCFF655IGI.bam bam (alignments) 4.5 GB
ENCFF669FDH.bam bam (alignments) 4.5 GB
ENCFF670NHN.tar tar (differential splicing quantifications) 3.0 MB
ENCFF685BSR.tsv tsv (transcript quantifications) 27.3 MB
ENCFF687CSV.bigWig bigWig (minus strand signal of unique reads) 61.4 MB
ENCFF691QTC.bigWig bigWig (plus strand signal of all reads) 70.8 MB
ENCFF709JIQ.tsv tsv (gene quantifications) 9.1 MB
ENCFF723TMZ.bigWig bigWig (plus strand signal of all reads) 62.0 MB
ENCFF727YMX.bigWig bigWig (minus strand signal of unique reads) 71.4 MB
ENCFF732CNS.tsv tsv (transcript quantifications) 29.8 MB
ENCFF732EPK.tsv tsv (transcript quantifications) 25.3 MB
ENCFF732RIC.bigWig bigWig (plus strand signal of all reads) 80.5 MB
ENCFF763TQR.bam bam (transcriptome alignments) 5.5 GB
ENCFF764EKB.bigWig bigWig (minus strand signal of unique reads) 62.1 MB
ENCFF782SMU.bigWig bigWig (plus strand signal of all reads) 70.7 MB
ENCFF785AWX.tsv tsv (transcript quantifications) 29.8 MB
ENCFF794YAF.tsv tsv (gene quantifications) 10.4 MB
ENCFF805WNU.bigWig bigWig (minus strand signal of all reads) 71.0 MB
ENCFF816AOJ.bam bam (alignments) 4.2 GB
ENCFF816RGM.bam bam (alignments) 5.4 GB
ENCFF825QFU.bigWig bigWig (minus strand signal of unique reads) 66.6 MB
ENCFF826GVK.bigWig bigWig (plus strand signal of all reads) 80.5 MB
ENCFF879AZY.tsv tsv (gene quantifications) 9.1 MB
ENCFF882NRT.bigWig bigWig (plus strand signal of unique reads) 73.4 MB
ENCFF894XOM.bigWig bigWig (minus strand signal of unique reads) 70.7 MB
ENCFF897RXO.bigWig bigWig (plus strand signal of unique reads) 60.1 MB
ENCFF948PIH.bigWig bigWig (plus strand signal of unique reads) 69.1 MB
ENCFF964MJJ.bigWig bigWig (plus strand signal of unique reads) 72.8 MB
ENCFF965JAT.bigWig bigWig (minus strand signal of all reads) 72.3 MB
ENCFF966RNL.tsv tsv (differential expression quantifications) 3.0 MB
ENCFF967MFF.bigWig bigWig (minus strand signal of unique reads) 62.1 MB
ENCFF982KHT.bigWig bigWig (plus strand signal of unique reads) 66.7 MB
ENCFF982NLJ.tsv tsv (transcript quantifications) 27.3 MB
ENCFF986NDG.tar tar (differential splicing quantifications) 3.6 MB
ENCFF992PIL.tsv tsv (differential expression quantifications) 1.7 MB
ENCSR968YWY ENCSR · via encode_api

RNA-seq on HepG2 cells treated with an shRNA knockdown against GPKOW. (GPKOW_BGHLV35)

Homo sapiens

92 data files
FileTypeSize
ENCFF021ATF.bigWig bigWig (plus strand signal of all reads) 70.3 MB
ENCFF023WCB.bam bam (alignments) 5.5 GB
ENCFF046LST.bigWig bigWig (minus strand signal of unique reads) 65.2 MB
ENCFF069ECW.bigWig bigWig (minus strand signal of unique reads) 62.9 MB
ENCFF079MOM.bigWig bigWig (plus strand signal of unique reads) 66.7 MB
ENCFF095TOD.bigWig bigWig (minus strand signal of all reads) 78.7 MB
ENCFF096DGM.bigWig bigWig (minus strand signal of unique reads) 70.4 MB
ENCFF100AIA.bigWig bigWig (plus strand signal of unique reads) 71.7 MB
ENCFF101RTF.bam bam (transcriptome alignments) 6.1 GB
ENCFF107BRG.bigWig bigWig (minus strand signal of all reads) 78.7 MB
ENCFF108ILY.bigWig bigWig (minus strand signal of all reads) 78.5 MB
ENCFF110ROC.tsv tsv (gene quantifications) 9.5 MB
ENCFF112BJL.bigWig bigWig (plus strand signal of all reads) 69.6 MB
ENCFF121JCX.bam bam (alignments) 5.5 GB
ENCFF130TMT.bigWig bigWig (minus strand signal of unique reads) 71.8 MB
ENCFF144WPX.tsv tsv (differential expression quantifications) 2.0 MB
ENCFF150GRD.tsv tsv (transcript quantifications) 29.9 MB
ENCFF161VKY.bigWig bigWig (minus strand signal of all reads) 70.1 MB
ENCFF165AAM.tsv tsv (gene quantifications) 9.1 MB
ENCFF175EBJ.fastq fastq (reads) 3.1 GB
ENCFF189BGE.tsv tsv (transcript quantifications) 25.0 MB
ENCFF192YYQ.bam bam (alignments) 5.4 GB
ENCFF203QNL.bigWig bigWig (minus strand signal of all reads) 80.4 MB
ENCFF210RFF.tsv tsv (gene quantifications) 10.4 MB
ENCFF233OXM.fastq fastq (reads) 3.1 GB
ENCFF235AOH.bam bam (alignments) 4.5 GB
ENCFF243ZSG.bigWig bigWig (minus strand signal of all reads) 80.7 MB
ENCFF259CGM.bigWig bigWig (minus strand signal of unique reads) 72.2 MB
ENCFF259QFV.tsv tsv (gene quantifications) 9.1 MB
ENCFF266NCI.bigWig bigWig (plus strand signal of all reads) 82.4 MB
ENCFF270TJD.bam bam (alignments) 4.4 GB
ENCFF272RMF.tsv tsv (transcript quantifications) 25.0 MB
ENCFF301CTC.bigWig bigWig (minus strand signal of all reads) 80.7 MB
ENCFF314HAL.bigWig bigWig (plus strand signal of all reads) 80.3 MB
ENCFF323HTU.tsv tsv (gene quantifications) 9.5 MB
ENCFF335UKK.bigWig bigWig (plus strand signal of unique reads) 63.3 MB
ENCFF351XEU.tsv tsv (differential expression quantifications) 4.4 MB
ENCFF364FLB.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF380XES.bigWig bigWig (minus strand signal of unique reads) 64.1 MB
ENCFF381OUR.bigWig bigWig (plus strand signal of all reads) 80.3 MB
ENCFF396WFU.bigWig bigWig (plus strand signal of unique reads) 72.5 MB
ENCFF402AQV.bigWig bigWig (minus strand signal of unique reads) 69.9 MB
ENCFF406RCD.bigWig bigWig (plus strand signal of unique reads) 68.1 MB
ENCFF407MRZ.bigWig bigWig (minus strand signal of all reads) 66.5 MB
ENCFF409SWJ.bam bam (transcriptome alignments) 6.9 GB
ENCFF422CXP.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF434KYB.fastq fastq (reads) 3.0 GB
ENCFF441FLV.tsv tsv (transcript quantifications) 29.9 MB
ENCFF448EAA.bigWig bigWig (plus strand signal of all reads) 68.3 MB
ENCFF453HTL.bigWig bigWig (plus strand signal of unique reads) 74.5 MB
ENCFF461GRD.bigWig bigWig (plus strand signal of unique reads) 72.0 MB
ENCFF476VBP.tar tar (differential splicing quantifications) 3.0 MB
ENCFF495MIA.bam bam (alignments) 5.4 GB
ENCFF507OCP.bigWig bigWig (plus strand signal of all reads) 82.4 MB
ENCFF552WXO.bam bam (alignments) 4.5 GB
ENCFF557GSR.bam bam (alignments) 4.5 GB
ENCFF585IXF.bigWig bigWig (minus strand signal of unique reads) 66.0 MB
ENCFF597GLX.bam bam (alignments) 4.6 GB
ENCFF601CDP.bigWig bigWig (plus strand signal of all reads) 82.0 MB
ENCFF603KNO.bam bam (alignments) 5.3 GB
ENCFF607ZGQ.tsv tsv (differential expression quantifications) 3.0 MB
ENCFF645LUY.tsv tsv (gene quantifications) 10.4 MB
ENCFF649KTE.bigWig bigWig (plus strand signal of unique reads) 67.2 MB
ENCFF656DPR.bigWig bigWig (plus strand signal of unique reads) 74.0 MB
ENCFF663INJ.tsv tsv (transcript quantifications) 25.4 MB
ENCFF674FUZ.bam bam (transcriptome alignments) 6.2 GB
ENCFF687SNN.bigWig bigWig (plus strand signal of unique reads) 66.0 MB
ENCFF698XUL.tar tar (differential splicing quantifications) 15.0 MB
ENCFF705TWV.fastq fastq (reads) 3.0 GB
ENCFF718GHF.bam bam (alignments) 4.4 GB
ENCFF749KVX.bam bam (transcriptome alignments) 6.1 GB
ENCFF762XZP.bigWig bigWig (plus strand signal of all reads) 73.9 MB
ENCFF773DWI.bigWig bigWig (minus strand signal of unique reads) 72.2 MB
ENCFF804OMN.tsv tsv (transcript quantifications) 27.1 MB
ENCFF806MSR.bigWig bigWig (minus strand signal of all reads) 69.3 MB
ENCFF810CBA.bigWig bigWig (minus strand signal of unique reads) 61.2 MB
ENCFF835KWF.tsv tsv (transcript quantifications) 25.4 MB
ENCFF838DQC.bam bam (transcriptome alignments) 6.9 GB
ENCFF850PHV.bigWig bigWig (minus strand signal of all reads) 72.0 MB
ENCFF859KVJ.tar tar (differential splicing quantifications) 3.8 MB
ENCFF861JDA.bam bam (alignments) 5.2 GB
ENCFF863NKA.bigWig bigWig (plus strand signal of unique reads) 74.5 MB
ENCFF871DCJ.bam bam (transcriptome alignments) 6.1 GB
ENCFF881FYA.bigWig bigWig (plus strand signal of all reads) 71.8 MB
ENCFF882OIV.bigWig bigWig (plus strand signal of unique reads) 65.1 MB
ENCFF922VCE.tsv tsv (transcript quantifications) 27.3 MB
ENCFF932EDZ.bigWig bigWig (minus strand signal of all reads) 68.0 MB
ENCFF946PPC.bigWig bigWig (minus strand signal of all reads) 68.4 MB
ENCFF947DKJ.bigWig bigWig (minus strand signal of unique reads) 64.7 MB
ENCFF986TYW.bigWig bigWig (plus strand signal of all reads) 79.9 MB
ENCFF997NPH.bigWig bigWig (minus strand signal of unique reads) 69.6 MB
ENCFF998IXE.bigWig bigWig (plus strand signal of all reads) 71.0 MB
ENCSR386YEV ENCSR · via encode_api

RNA-seq on K562 cells treated with an shRNA knockdown against CCAR1. (CCAR1_BGKLV24)

Homo sapiens

92 data files
FileTypeSize
ENCFF005ZVJ.tar tar (differential splicing quantifications) 3.2 MB
ENCFF015HSC.bigWig bigWig (plus strand signal of all reads) 58.8 MB
ENCFF026NKF.bigWig bigWig (plus strand signal of all reads) 71.8 MB
ENCFF039RVQ.bigWig bigWig (minus strand signal of all reads) 69.6 MB
ENCFF061JSQ.bam bam (transcriptome alignments) 3.9 GB
ENCFF064WFW.bigWig bigWig (plus strand signal of unique reads) 52.1 MB
ENCFF084WGX.fastq fastq (reads) 1.5 GB
ENCFF090YEG.tsv tsv (gene quantifications) 9.1 MB
ENCFF095UFQ.bigWig bigWig (plus strand signal of all reads) 65.2 MB
ENCFF112LKD.bigWig bigWig (minus strand signal of all reads) 58.0 MB
ENCFF131IEX.bigWig bigWig (plus strand signal of all reads) 53.3 MB
ENCFF147FEB.bam bam (alignments) 2.2 GB
ENCFF152QYC.tar tar (differential splicing quantifications) 12.4 MB
ENCFF155YLS.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF160DFC.tsv tsv (gene quantifications) 10.4 MB
ENCFF182WFQ.bam bam (alignments) 2.6 GB
ENCFF185RLN.tsv tsv (transcript quantifications) 24.9 MB
ENCFF207AMS.bigWig bigWig (minus strand signal of all reads) 71.0 MB
ENCFF214BOM.tsv tsv (differential expression quantifications) 4.2 MB
ENCFF239SCP.bigWig bigWig (plus strand signal of unique reads) 56.5 MB
ENCFF255SAX.bigWig bigWig (plus strand signal of all reads) 58.8 MB
ENCFF268TUS.bigWig bigWig (plus strand signal of all reads) 58.0 MB
ENCFF283SLT.tsv tsv (transcript quantifications) 25.3 MB
ENCFF287FWD.bigWig bigWig (minus strand signal of unique reads) 58.5 MB
ENCFF323LTX.bigWig bigWig (plus strand signal of unique reads) 48.8 MB
ENCFF330MGV.fastq fastq (reads) 1.3 GB
ENCFF333QYQ.bam bam (alignments) 2.6 GB
ENCFF351LQK.tar tar (differential splicing quantifications) 2.9 MB
ENCFF354GDD.bigWig bigWig (minus strand signal of all reads) 71.0 MB
ENCFF384MET.bigWig bigWig (minus strand signal of all reads) 51.5 MB
ENCFF388ETI.tsv tsv (gene quantifications) 9.4 MB
ENCFF390LJT.bam bam (alignments) 3.4 GB
ENCFF391JUX.bam bam (alignments) 2.9 GB
ENCFF392ZXT.bigWig bigWig (minus strand signal of unique reads) 47.5 MB
ENCFF397FWB.bigWig bigWig (plus strand signal of all reads) 61.0 MB
ENCFF400COU.tsv tsv (gene quantifications) 9.4 MB
ENCFF415MEV.bigWig bigWig (minus strand signal of unique reads) 50.8 MB
ENCFF433XDS.tsv tsv (differential expression quantifications) 5.5 MB
ENCFF443OBW.bigWig bigWig (plus strand signal of unique reads) 63.1 MB
ENCFF447PQK.bigWig bigWig (plus strand signal of unique reads) 45.4 MB
ENCFF458KFJ.bigWig bigWig (plus strand signal of unique reads) 60.3 MB
ENCFF478PRI.bam bam (alignments) 2.2 GB
ENCFF490XNA.bigWig bigWig (plus strand signal of unique reads) 52.1 MB
ENCFF507HKY.bigWig bigWig (minus strand signal of unique reads) 58.8 MB
ENCFF516JSK.bam bam (alignments) 2.9 GB
ENCFF520OXT.bam bam (alignments) 2.9 GB
ENCFF525VGC.bigWig bigWig (minus strand signal of unique reads) 50.9 MB
ENCFF528RHP.bigWig bigWig (plus strand signal of unique reads) 52.1 MB
ENCFF535OEE.bigWig bigWig (minus strand signal of unique reads) 50.7 MB
ENCFF541UZR.bigWig bigWig (plus strand signal of all reads) 52.2 MB
ENCFF545VZC.bam bam (transcriptome alignments) 4.0 GB
ENCFF579MRW.bigWig bigWig (minus strand signal of all reads) 64.2 MB
ENCFF580CCD.bigWig bigWig (plus strand signal of all reads) 63.8 MB
ENCFF586LLK.tsv tsv (gene quantifications) 9.1 MB
ENCFF626MWK.bigWig bigWig (minus strand signal of unique reads) 44.1 MB
ENCFF670PCV.bam bam (transcriptome alignments) 4.4 GB
ENCFF683EAB.bigWig bigWig (minus strand signal of unique reads) 61.7 MB
ENCFF693DSU.bigWig bigWig (minus strand signal of all reads) 63.1 MB
ENCFF708BKD.bigWig bigWig (minus strand signal of all reads) 60.0 MB
ENCFF722GUO.bigWig bigWig (plus strand signal of all reads) 49.2 MB
ENCFF731QIT.fastq fastq (reads) 2.0 GB
ENCFF735TCX.bam bam (transcriptome alignments) 3.0 GB
ENCFF738LUQ.tsv tsv (gene quantifications) 10.4 MB
ENCFF741HZT.fastq fastq (reads) 1.8 GB
ENCFF754BYO.bam bam (alignments) 3.4 GB
ENCFF769IEA.tsv tsv (differential expression quantifications) 1.8 MB
ENCFF777TNO.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF780KZP.tsv tsv (transcript quantifications) 27.3 MB
ENCFF796TJR.bam bam (alignments) 2.5 GB
ENCFF808PKQ.tsv tsv (transcript quantifications) 25.3 MB
ENCFF827HSR.bigWig bigWig (minus strand signal of unique reads) 55.0 MB
ENCFF828IEA.bigWig bigWig (plus strand signal of all reads) 70.5 MB
ENCFF833CLC.tsv tsv (transcript quantifications) 29.8 MB
ENCFF875KSG.bigWig bigWig (plus strand signal of unique reads) 63.3 MB
ENCFF880JPQ.bigWig bigWig (minus strand signal of unique reads) 47.8 MB
ENCFF887OGR.bigWig bigWig (minus strand signal of all reads) 57.2 MB
ENCFF888AHN.bigWig bigWig (minus strand signal of all reads) 48.3 MB
ENCFF900BJF.bam bam (transcriptome alignments) 3.0 GB
ENCFF901AMQ.bam bam (transcriptome alignments) 3.3 GB
ENCFF903DPO.bigWig bigWig (plus strand signal of all reads) 71.9 MB
ENCFF903VIE.bigWig bigWig (plus strand signal of unique reads) 48.8 MB
ENCFF925OPU.bigWig bigWig (plus strand signal of unique reads) 59.6 MB
ENCFF946IIV.bam bam (alignments) 3.4 GB
ENCFF953ZEG.bigWig bigWig (plus strand signal of unique reads) 63.7 MB
ENCFF958CKU.bigWig bigWig (minus strand signal of all reads) 58.0 MB
ENCFF964IGW.bam bam (alignments) 2.2 GB
ENCFF971PVB.bigWig bigWig (minus strand signal of all reads) 52.4 MB
ENCFF971VGH.tsv tsv (transcript quantifications) 29.8 MB
ENCFF980LAC.tsv tsv (transcript quantifications) 27.2 MB
ENCFF983XII.bigWig bigWig (minus strand signal of unique reads) 61.9 MB
ENCFF992POK.bigWig bigWig (minus strand signal of unique reads) 62.1 MB
ENCFF997ZIK.tsv tsv (transcript quantifications) 24.9 MB
ENCSR756CKJ ENCSR · via encode_api

eCLIP experiment on K562 against RBFOX2

Homo sapiens

34 data files
FileTypeSize
ENCFF076RDA.bed bed (peaks) 3.3 MB
ENCFF087GDX.bigWig bigWig (plus strand signal of unique reads) 23.0 MB
ENCFF101WQW.bed bed (peaks) 817.5 KB
ENCFF158LBM.bigWig bigWig (minus strand signal of unique reads) 36.0 MB
ENCFF163QEA.fastq fastq (reads) 418.3 MB
ENCFF174SUY.bigBed bigBed (peaks) 1.5 MB
ENCFF179IVJ.bigWig bigWig (plus strand signal of unique reads) 23.9 MB
ENCFF184NZT.bigBed bigBed (peaks) 4.3 MB
ENCFF190GZC.bigWig bigWig (minus strand signal of unique reads) 36.9 MB
ENCFF206RIM.bed bed (peaks) 79.8 KB
ENCFF217YVY.bigBed bigBed (peaks) 671.6 KB
ENCFF220WYH.bigBed bigBed (peaks) 1.6 MB
ENCFF228FGP.bigBed bigBed (peaks) 6.0 MB
ENCFF236LVL.bigWig bigWig (plus strand signal of unique reads) 38.5 MB
ENCFF249RTF.bam bam (alignments) 440.3 MB
ENCFF295CNS.bigBed bigBed (peaks) 604.0 KB
ENCFF296GDR.bam bam (alignments) 417.7 MB
ENCFF347YVH.bigBed bigBed (peaks) 6.0 MB
ENCFF426AYZ.bed bed (peaks) 272.3 KB
ENCFF462CMF.fastq fastq (reads) 646.3 MB
ENCFF474SIP.bed bed (peaks) 224.0 KB
ENCFF537RYR.bam bam (alignments) 774.9 MB
ENCFF541AUT.bigWig bigWig (plus strand signal of unique reads) 37.5 MB
ENCFF582WWR.bed bed (peaks) 78.9 KB
ENCFF617JKI.bigWig bigWig (minus strand signal of unique reads) 21.7 MB
ENCFF654XPT.bam bam (alignments) 803.4 MB
ENCFF679UXV.bigWig bigWig (minus strand signal of unique reads) 22.8 MB
ENCFF779OIO.bed bed (peaks) 2.2 MB
ENCFF801MDI.bigBed bigBed (peaks) 4.3 MB
ENCFF832SRM.bed bed (peaks) 677.3 KB
ENCFF910WLP.bed bed (peaks) 3.2 MB
ENCFF930TLO.fastq fastq (reads) 628.2 MB
ENCFF942TPA.fastq fastq (reads) 424.0 MB
ENCFF994PFX.bed bed (peaks) 2.2 MB
ENCSR409CSO ENCSR · via encode_api

RNA-seq on HepG2 cells treated with an shRNA knockdown against AUH. (AUH_BGHLV37)

Homo sapiens

92 data files
FileTypeSize
ENCFF003BVP.bigWig bigWig (minus strand signal of all reads) 87.1 MB
ENCFF021KCX.bigWig bigWig (plus strand signal of unique reads) 89.5 MB
ENCFF028IPE.bam bam (transcriptome alignments) 6.5 GB
ENCFF040XAO.fastq fastq (reads) 3.8 GB
ENCFF057WKG.bigWig bigWig (minus strand signal of unique reads) 83.2 MB
ENCFF085JXU.bam bam (alignments) 5.5 GB
ENCFF090WIE.bigWig bigWig (plus strand signal of unique reads) 88.9 MB
ENCFF094DXP.bigWig bigWig (minus strand signal of all reads) 89.1 MB
ENCFF100LQD.tsv tsv (gene quantifications) 9.1 MB
ENCFF108KLN.tsv tsv (transcript quantifications) 24.9 MB
ENCFF118VRQ.tsv tsv (gene quantifications) 9.5 MB
ENCFF122CDS.bigWig bigWig (minus strand signal of all reads) 117.6 MB
ENCFF178DRF.bigWig bigWig (minus strand signal of unique reads) 99.3 MB
ENCFF206WPD.bigWig bigWig (plus strand signal of unique reads) 84.3 MB
ENCFF207UQO.bam bam (transcriptome alignments) 9.0 GB
ENCFF216QAJ.bigWig bigWig (minus strand signal of all reads) 117.6 MB
ENCFF227HIP.tar tar (differential splicing quantifications) 5.1 MB
ENCFF227WUS.bigWig bigWig (minus strand signal of unique reads) 86.7 MB
ENCFF244IGF.bigWig bigWig (plus strand signal of all reads) 100.0 MB
ENCFF245IVE.bigWig bigWig (minus strand signal of unique reads) 87.1 MB
ENCFF271WBV.bam bam (alignments) 4.2 GB
ENCFF277RWK.bigWig bigWig (minus strand signal of unique reads) 80.6 MB
ENCFF287APZ.bigWig bigWig (minus strand signal of all reads) 115.9 MB
ENCFF289ETL.tsv tsv (gene quantifications) 9.1 MB
ENCFF309XER.bigWig bigWig (plus strand signal of all reads) 88.9 MB
ENCFF326ECT.bigWig bigWig (minus strand signal of all reads) 107.2 MB
ENCFF326XLG.bam bam (alignments) 6.7 GB
ENCFF352TCO.bigWig bigWig (plus strand signal of unique reads) 83.1 MB
ENCFF365PHL.tsv tsv (gene quantifications) 10.4 MB
ENCFF378QWD.tsv tsv (differential expression quantifications) 4.5 MB
ENCFF381CMJ.tsv tsv (transcript quantifications) 29.8 MB
ENCFF382QOT.bigWig bigWig (plus strand signal of all reads) 107.8 MB
ENCFF396WPA.bam bam (alignments) 7.1 GB
ENCFF397OLL.bigWig bigWig (plus strand signal of unique reads) 102.6 MB
ENCFF423HGY.fastq fastq (reads) 2.8 GB
ENCFF423OSZ.bigWig bigWig (plus strand signal of all reads) 90.1 MB
ENCFF430PPK.bigWig bigWig (plus strand signal of unique reads) 108.0 MB
ENCFF432IBV.bam bam (alignments) 7.1 GB
ENCFF438WRF.fastq fastq (reads) 2.9 GB
ENCFF447RFE.bam bam (alignments) 5.0 GB
ENCFF454MDM.bigWig bigWig (plus strand signal of unique reads) 102.0 MB
ENCFF460PEL.bigWig bigWig (minus strand signal of all reads) 105.3 MB
ENCFF473PTU.bigWig bigWig (minus strand signal of unique reads) 99.6 MB
ENCFF473YVO.tsv tsv (differential expression quantifications) 5.5 MB
ENCFF474CQX.tsv tsv (transcript quantifications) 27.5 MB
ENCFF479OEH.tsv tsv (transcript quantifications) 25.3 MB
ENCFF504RMR.bam bam (transcriptome alignments) 8.9 GB
ENCFF506JLF.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF506YEW.bigWig bigWig (minus strand signal of unique reads) 97.6 MB
ENCFF523FVQ.bigWig bigWig (minus strand signal of unique reads) 104.9 MB
ENCFF543YIJ.bigWig bigWig (minus strand signal of unique reads) 86.5 MB
ENCFF557RUA.bigWig bigWig (plus strand signal of unique reads) 85.5 MB
ENCFF580RXI.tsv tsv (transcript quantifications) 25.3 MB
ENCFF584NRE.bigWig bigWig (plus strand signal of all reads) 109.6 MB
ENCFF585BZD.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF590HYI.bigWig bigWig (minus strand signal of unique reads) 103.9 MB
ENCFF595XZM.bigWig bigWig (plus strand signal of unique reads) 89.1 MB
ENCFF598TVE.bigWig bigWig (plus strand signal of all reads) 119.9 MB
ENCFF626LZW.bam bam (alignments) 5.8 GB
ENCFF627MEH.bam bam (transcriptome alignments) 6.6 GB
ENCFF632BMP.bigWig bigWig (plus strand signal of all reads) 119.9 MB
ENCFF637RWN.tsv tsv (transcript quantifications) 24.9 MB
ENCFF651QEK.bigWig bigWig (minus strand signal of all reads) 98.3 MB
ENCFF666BZN.bigWig bigWig (minus strand signal of unique reads) 82.1 MB
ENCFF676UYX.bam bam (alignments) 5.3 GB
ENCFF682LIK.tsv tsv (gene quantifications) 10.4 MB
ENCFF689DFL.tsv tsv (transcript quantifications) 27.4 MB
ENCFF691ABQ.tsv tsv (transcript quantifications) 29.8 MB
ENCFF696ZNH.fastq fastq (reads) 3.9 GB
ENCFF735BCF.bam bam (transcriptome alignments) 7.5 GB
ENCFF744GKR.bam bam (transcriptome alignments) 10.2 GB
ENCFF764TQQ.tsv tsv (gene quantifications) 9.5 MB
ENCFF786XDN.bam bam (alignments) 4.1 GB
ENCFF803ESB.bigWig bigWig (minus strand signal of all reads) 98.2 MB
ENCFF806UPC.bam bam (alignments) 5.3 GB
ENCFF817YCU.bigWig bigWig (plus strand signal of unique reads) 108.0 MB
ENCFF833ZII.tsv tsv (differential expression quantifications) 2.0 MB
ENCFF835DIA.bam bam (alignments) 4.3 GB
ENCFF842OED.bigWig bigWig (minus strand signal of all reads) 88.6 MB
ENCFF858AWZ.bigWig bigWig (minus strand signal of all reads) 96.8 MB
ENCFF862LHY.bigWig bigWig (plus strand signal of all reads) 98.3 MB
ENCFF882HIH.bigWig bigWig (minus strand signal of unique reads) 104.9 MB
ENCFF894QDN.bigWig bigWig (plus strand signal of unique reads) 107.0 MB
ENCFF897GUE.bigWig bigWig (plus strand signal of all reads) 117.9 MB
ENCFF900UQH.bigWig bigWig (plus strand signal of all reads) 90.9 MB
ENCFF922MBM.bigWig bigWig (minus strand signal of all reads) 106.0 MB
ENCFF934OYQ.bam bam (alignments) 5.5 GB
ENCFF939WLP.bigWig bigWig (plus strand signal of all reads) 99.9 MB
ENCFF963MZO.bigWig bigWig (plus strand signal of unique reads) 100.7 MB
ENCFF965DFY.tar tar (differential splicing quantifications) 18.8 MB
ENCFF966QLF.bigWig bigWig (plus strand signal of all reads) 108.0 MB
ENCFF972KZT.tar tar (differential splicing quantifications) 4.0 MB
ENCSR529MBZ ENCSR · via encode_api

RNA-seq on K562 cells treated with an shRNA knockdown against PPIG. (PPIG_BGKLV29)

Homo sapiens

92 data files
FileTypeSize
ENCFF019QBX.tsv tsv (transcript quantifications) 25.4 MB
ENCFF038NBJ.bam bam (alignments) 4.5 GB
ENCFF045OES.bigWig bigWig (plus strand signal of all reads) 92.5 MB
ENCFF073ESE.bigWig bigWig (minus strand signal of unique reads) 72.8 MB
ENCFF079XNT.bigWig bigWig (minus strand signal of all reads) 85.2 MB
ENCFF086QCA.tsv tsv (gene quantifications) 10.4 MB
ENCFF087RZF.bigWig bigWig (plus strand signal of unique reads) 76.5 MB
ENCFF115UZE.bigWig bigWig (minus strand signal of all reads) 91.3 MB
ENCFF138BHQ.bam bam (alignments) 3.6 GB
ENCFF142BMT.bigWig bigWig (minus strand signal of all reads) 91.2 MB
ENCFF155EUI.bigWig bigWig (plus strand signal of all reads) 82.5 MB
ENCFF155QOL.bigWig bigWig (plus strand signal of all reads) 86.3 MB
ENCFF159COR.bigWig bigWig (minus strand signal of unique reads) 80.2 MB
ENCFF165CWL.bigWig bigWig (minus strand signal of unique reads) 74.6 MB
ENCFF174ZFV.bam bam (transcriptome alignments) 5.9 GB
ENCFF193CFU.tsv tsv (gene quantifications) 9.5 MB
ENCFF205TXD.tsv tsv (transcript quantifications) 25.4 MB
ENCFF208VTN.bigWig bigWig (plus strand signal of unique reads) 77.4 MB
ENCFF223QUB.bigWig bigWig (minus strand signal of all reads) 75.6 MB
ENCFF228XIP.bigWig bigWig (plus strand signal of unique reads) 76.5 MB
ENCFF244FTL.bigWig bigWig (plus strand signal of unique reads) 70.9 MB
ENCFF253TRI.fastq fastq (reads) 2.5 GB
ENCFF274EJL.bigWig bigWig (plus strand signal of unique reads) 82.4 MB
ENCFF287QFE.bigWig bigWig (minus strand signal of unique reads) 80.5 MB
ENCFF296NEO.bam bam (alignments) 3.6 GB
ENCFF306XSG.bam bam (alignments) 4.1 GB
ENCFF328AYV.bigWig bigWig (minus strand signal of unique reads) 80.3 MB
ENCFF328NVO.bigWig bigWig (plus strand signal of unique reads) 82.1 MB
ENCFF338COL.bigWig bigWig (plus strand signal of all reads) 76.6 MB
ENCFF341BTN.tsv tsv (gene quantifications) 9.5 MB
ENCFF368DJK.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF381JEG.bam bam (alignments) 4.4 GB
ENCFF404SUL.bigWig bigWig (minus strand signal of all reads) 80.0 MB
ENCFF422CTE.bigWig bigWig (minus strand signal of unique reads) 69.4 MB
ENCFF460HMV.fastq fastq (reads) 2.9 GB
ENCFF469MYT.bigWig bigWig (minus strand signal of unique reads) 75.3 MB
ENCFF493DCE.bigWig bigWig (minus strand signal of all reads) 77.4 MB
ENCFF507HMF.tsv tsv (transcript quantifications) 27.3 MB
ENCFF507LOO.bam bam (transcriptome alignments) 6.9 GB
ENCFF518PTF.tar tar (differential splicing quantifications) 3.9 MB
ENCFF523LQZ.bam bam (alignments) 4.5 GB
ENCFF525SMW.bigWig bigWig (plus strand signal of all reads) 85.1 MB
ENCFF532WLD.bigWig bigWig (plus strand signal of unique reads) 75.9 MB
ENCFF536JMO.tsv tsv (differential expression quantifications) 4.4 MB
ENCFF538UEQ.bigWig bigWig (plus strand signal of all reads) 90.7 MB
ENCFF540COG.tsv tsv (gene quantifications) 9.1 MB
ENCFF566PTB.bam bam (transcriptome alignments) 7.8 GB
ENCFF568BNE.bigWig bigWig (plus strand signal of all reads) 81.6 MB
ENCFF589EHC.bigWig bigWig (minus strand signal of unique reads) 67.8 MB
ENCFF592LLE.bam bam (alignments) 5.0 GB
ENCFF592MOD.bigWig bigWig (minus strand signal of unique reads) 70.6 MB
ENCFF616DEC.bigWig bigWig (plus strand signal of unique reads) 74.9 MB
ENCFF624PZA.bigWig bigWig (minus strand signal of all reads) 82.1 MB
ENCFF652GWU.bam bam (alignments) 5.1 GB
ENCFF687WQL.tsv tsv (transcript quantifications) 24.9 MB
ENCFF723HVW.bam bam (alignments) 4.1 GB
ENCFF724BVF.tsv tsv (differential expression quantifications) 5.5 MB
ENCFF727ENS.bigWig bigWig (plus strand signal of all reads) 92.5 MB
ENCFF728KNG.fastq fastq (reads) 2.6 GB
ENCFF742KEN.tsv tsv (gene quantifications) 10.4 MB
ENCFF758FPJ.bam bam (alignments) 4.1 GB
ENCFF764KNM.tsv tsv (transcript quantifications) 29.9 MB
ENCFF785FAR.bam bam (alignments) 3.6 GB
ENCFF786RBC.bigWig bigWig (minus strand signal of all reads) 89.5 MB
ENCFF787PAY.bigWig bigWig (plus strand signal of unique reads) 82.2 MB
ENCFF788KWK.bigWig bigWig (minus strand signal of unique reads) 74.8 MB
ENCFF792CVF.bigWig bigWig (plus strand signal of unique reads) 77.3 MB
ENCFF796GUE.bigWig bigWig (plus strand signal of unique reads) 69.8 MB
ENCFF807WXH.bigWig bigWig (minus strand signal of all reads) 83.9 MB
ENCFF819UNS.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF822OZD.bigWig bigWig (minus strand signal of all reads) 74.3 MB
ENCFF832RBL.tsv tsv (transcript quantifications) 29.9 MB
ENCFF835OMW.tar tar (differential splicing quantifications) 15.9 MB
ENCFF853UVW.tsv tsv (transcript quantifications) 27.4 MB
ENCFF868ENV.bigWig bigWig (plus strand signal of all reads) 83.6 MB
ENCFF869QFB.bigWig bigWig (plus strand signal of all reads) 75.9 MB
ENCFF890BLP.bigWig bigWig (minus strand signal of all reads) 81.3 MB
ENCFF896QBX.tar tar (differential splicing quantifications) 4.8 MB
ENCFF897XMR.bigWig bigWig (plus strand signal of all reads) 86.3 MB
ENCFF911AOB.fastq fastq (reads) 3.0 GB
ENCFF936ZTH.tsv tsv (differential expression quantifications) 1.6 MB
ENCFF937EAP.bigWig bigWig (minus strand signal of unique reads) 75.7 MB
ENCFF949UXC.bam bam (transcriptome alignments) 6.8 GB
ENCFF956EKA.tsv tsv (gene quantifications) 9.1 MB
ENCFF963AVP.bigWig bigWig (minus strand signal of unique reads) 74.2 MB
ENCFF968WTZ.tsv tsv (transcript quantifications) 25.0 MB
ENCFF971LSZ.bigWig bigWig (plus strand signal of unique reads) 72.5 MB
ENCFF975JYA.bigWig bigWig (plus strand signal of all reads) 78.8 MB
ENCFF979JKW.bam bam (transcriptome alignments) 5.9 GB
ENCFF985YTB.bam bam (transcriptome alignments) 6.8 GB
ENCFF992XLO.bigWig bigWig (minus strand signal of all reads) 85.2 MB
ENCFF999LFP.bam bam (alignments) 5.1 GB
ENCSR634KHL ENCSR · via encode_api

RNA-seq on HepG2 cells treated with an shRNA knockdown against HDGF. (HDGF_BGHLV31)

Homo sapiens

92 data files
FileTypeSize
ENCFF016HLY.bigWig bigWig (plus strand signal of all reads) 84.0 MB
ENCFF022RIU.bigWig bigWig (minus strand signal of all reads) 82.1 MB
ENCFF034JWJ.bam bam (alignments) 3.4 GB
ENCFF053OXG.bigWig bigWig (minus strand signal of unique reads) 80.4 MB
ENCFF065DYA.tsv tsv (transcript quantifications) 24.9 MB
ENCFF065IMN.bigWig bigWig (minus strand signal of unique reads) 72.7 MB
ENCFF068JQG.bigWig bigWig (plus strand signal of unique reads) 76.0 MB
ENCFF072XHS.fastq fastq (reads) 2.0 GB
ENCFF075ACC.fastq fastq (reads) 2.2 GB
ENCFF083XLF.bigWig bigWig (minus strand signal of unique reads) 70.3 MB
ENCFF098OHN.bigWig bigWig (minus strand signal of unique reads) 80.4 MB
ENCFF107FAJ.bigWig bigWig (minus strand signal of all reads) 82.7 MB
ENCFF113UGU.bigWig bigWig (plus strand signal of all reads) 84.4 MB
ENCFF128LJM.fastq fastq (reads) 1.9 GB
ENCFF165QZX.bigWig bigWig (minus strand signal of unique reads) 80.4 MB
ENCFF168THL.bigWig bigWig (minus strand signal of unique reads) 77.2 MB
ENCFF197BPF.bigWig bigWig (minus strand signal of all reads) 81.9 MB
ENCFF205NZL.bam bam (transcriptome alignments) 5.4 GB
ENCFF210IVJ.bigWig bigWig (plus strand signal of all reads) 83.6 MB
ENCFF214SHE.bigWig bigWig (plus strand signal of unique reads) 70.4 MB
ENCFF214VCE.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF228CRT.tsv tsv (differential expression quantifications) 2.0 MB
ENCFF230IKJ.bigWig bigWig (plus strand signal of all reads) 91.7 MB
ENCFF242EGF.bigWig bigWig (minus strand signal of all reads) 82.7 MB
ENCFF255JRC.tsv tsv (differential expression quantifications) 5.5 MB
ENCFF258HEF.bigWig bigWig (plus strand signal of unique reads) 82.8 MB
ENCFF295WOM.bigWig bigWig (plus strand signal of unique reads) 79.6 MB
ENCFF306FAT.bigWig bigWig (plus strand signal of unique reads) 82.8 MB
ENCFF312XAF.bigWig bigWig (plus strand signal of unique reads) 78.3 MB
ENCFF319TPK.bigWig bigWig (minus strand signal of all reads) 72.5 MB
ENCFF325TTP.bam bam (transcriptome alignments) 6.1 GB
ENCFF331RCH.bigWig bigWig (minus strand signal of all reads) 75.3 MB
ENCFF331YKP.bigWig bigWig (minus strand signal of unique reads) 70.7 MB
ENCFF359JYW.bam bam (alignments) 3.0 GB
ENCFF373JYL.bam bam (alignments) 3.4 GB
ENCFF386ZZO.bigWig bigWig (minus strand signal of all reads) 75.2 MB
ENCFF393NDR.tsv tsv (gene quantifications) 10.4 MB
ENCFF394CIL.bigWig bigWig (plus strand signal of all reads) 76.7 MB
ENCFF401GRK.bigWig bigWig (plus strand signal of unique reads) 72.3 MB
ENCFF456MAS.bam bam (alignments) 3.7 GB
ENCFF460ARW.bigWig bigWig (plus strand signal of all reads) 77.0 MB
ENCFF469RPC.bam bam (alignments) 3.8 GB
ENCFF472AAM.tsv tsv (transcript quantifications) 29.8 MB
ENCFF478QQI.tsv tsv (transcript quantifications) 27.4 MB
ENCFF481JXO.tsv tsv (transcript quantifications) 29.8 MB
ENCFF488WMA.bigWig bigWig (minus strand signal of all reads) 82.0 MB
ENCFF515LUR.tar tar (differential splicing quantifications) 3.3 MB
ENCFF523XCG.bigWig bigWig (minus strand signal of unique reads) 68.1 MB
ENCFF541SZV.bigWig bigWig (plus strand signal of all reads) 90.9 MB
ENCFF545AUF.fastq fastq (reads) 2.2 GB
ENCFF548TCS.bigWig bigWig (minus strand signal of unique reads) 76.1 MB
ENCFF561BQA.bigWig bigWig (plus strand signal of all reads) 91.7 MB
ENCFF571LJW.tar tar (differential splicing quantifications) 16.9 MB
ENCFF576HQE.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF580CJS.tsv tsv (differential expression quantifications) 4.3 MB
ENCFF580NZI.tsv tsv (transcript quantifications) 27.4 MB
ENCFF604SNX.bigWig bigWig (minus strand signal of all reads) 89.9 MB
ENCFF609ZWR.bigWig bigWig (plus strand signal of all reads) 82.7 MB
ENCFF622EFO.tsv tsv (transcript quantifications) 25.3 MB
ENCFF626ADN.bigWig bigWig (minus strand signal of unique reads) 74.8 MB
ENCFF645DGL.tsv tsv (transcript quantifications) 25.3 MB
ENCFF657TNG.tar tar (differential splicing quantifications) 4.0 MB
ENCFF674SKG.bigWig bigWig (minus strand signal of unique reads) 73.1 MB
ENCFF684QIS.bam bam (transcriptome alignments) 4.7 GB
ENCFF709CMJ.bigWig bigWig (plus strand signal of all reads) 83.5 MB
ENCFF709FOS.bigWig bigWig (plus strand signal of all reads) 84.4 MB
ENCFF709HIL.tsv tsv (gene quantifications) 9.4 MB
ENCFF715SPP.bigWig bigWig (minus strand signal of all reads) 80.7 MB
ENCFF724PNA.tsv tsv (gene quantifications) 10.4 MB
ENCFF745GYC.bam bam (alignments) 3.3 GB
ENCFF758KWV.bam bam (transcriptome alignments) 5.3 GB
ENCFF760KPQ.bigWig bigWig (minus strand signal of unique reads) 73.8 MB
ENCFF772TBT.bigWig bigWig (plus strand signal of unique reads) 75.3 MB
ENCFF774VVE.tsv tsv (transcript quantifications) 24.9 MB
ENCFF782VMI.bigWig bigWig (minus strand signal of all reads) 89.2 MB
ENCFF803TTT.bam bam (alignments) 2.6 GB
ENCFF818CIE.bigWig bigWig (plus strand signal of all reads) 74.2 MB
ENCFF820OYW.bam bam (alignments) 3.0 GB
ENCFF829VGF.bigWig bigWig (plus strand signal of unique reads) 82.9 MB
ENCFF829XHX.bigWig bigWig (plus strand signal of unique reads) 72.9 MB
ENCFF860OAV.bam bam (alignments) 3.8 GB
ENCFF864TLA.bam bam (alignments) 2.6 GB
ENCFF868TZM.tsv tsv (gene quantifications) 9.1 MB
ENCFF894DGR.bigWig bigWig (plus strand signal of unique reads) 74.9 MB
ENCFF895ZUX.tsv tsv (gene quantifications) 9.5 MB
ENCFF909UNH.bam bam (alignments) 3.1 GB
ENCFF911RPA.tsv tsv (gene quantifications) 9.1 MB
ENCFF917XFH.bigWig bigWig (plus strand signal of unique reads) 77.4 MB
ENCFF938WOS.bigWig bigWig (minus strand signal of all reads) 89.9 MB
ENCFF945WJV.bam bam (alignments) 2.7 GB
ENCFF948MOK.bam bam (transcriptome alignments) 4.7 GB
ENCFF952NGW.bam bam (transcriptome alignments) 5.3 GB
ENCSR767LLP ENCSR · via encode_api

RNA-seq on HepG2 cells treated with an shRNA knockdown against RBFOX2. (RBFOX2_BGHLV26)

Homo sapiens

92 data files
FileTypeSize
ENCFF007HPZ.bigWig bigWig (minus strand signal of all reads) 67.2 MB
ENCFF025JHD.bigWig bigWig (plus strand signal of all reads) 79.9 MB
ENCFF040CTS.fastq fastq (reads) 3.2 GB
ENCFF042VXF.tsv tsv (gene quantifications) 9.1 MB
ENCFF078TKI.tsv tsv (gene quantifications) 9.5 MB
ENCFF099WWT.bigWig bigWig (plus strand signal of unique reads) 64.6 MB
ENCFF106CEI.bigWig bigWig (minus strand signal of all reads) 78.4 MB
ENCFF143AWC.tar tar (differential splicing quantifications) 2.8 MB
ENCFF155WNI.bam bam (alignments) 4.5 GB
ENCFF162AXB.bigWig bigWig (minus strand signal of all reads) 67.4 MB
ENCFF166HLT.tsv tsv (differential expression quantifications) 2.0 MB
ENCFF184VWC.bigWig bigWig (plus strand signal of unique reads) 66.5 MB
ENCFF201PEI.fastq fastq (reads) 3.7 GB
ENCFF222JWL.tsv tsv (gene quantifications) 9.1 MB
ENCFF229CYL.tsv tsv (differential expression quantifications) 1.8 MB
ENCFF241ULK.bigWig bigWig (plus strand signal of all reads) 68.5 MB
ENCFF247YUE.bigWig bigWig (minus strand signal of all reads) 79.4 MB
ENCFF271HLY.bigWig bigWig (minus strand signal of unique reads) 64.8 MB
ENCFF288RRE.bigWig bigWig (plus strand signal of unique reads) 63.8 MB
ENCFF288UJR.tsv tsv (differential expression quantifications) 5.5 MB
ENCFF292MTX.tsv tsv (gene quantifications) 10.4 MB
ENCFF310KSQ.tsv tsv (transcript quantifications) 25.0 MB
ENCFF318SZD.bigWig bigWig (minus strand signal of unique reads) 64.0 MB
ENCFF324UNN.bigWig bigWig (minus strand signal of all reads) 79.4 MB
ENCFF347ERZ.bam bam (alignments) 5.3 GB
ENCFF351BNR.bam bam (alignments) 4.5 GB
ENCFF353LPV.bigWig bigWig (plus strand signal of all reads) 80.7 MB
ENCFF356JHC.bigWig bigWig (plus strand signal of all reads) 67.5 MB
ENCFF388VQJ.tsv tsv (differential expression quantifications) 2.7 MB
ENCFF390ZUH.bigWig bigWig (plus strand signal of unique reads) 72.2 MB
ENCFF394SAX.tsv tsv (transcript quantifications) 25.4 MB
ENCFF409ZEC.bigWig bigWig (minus strand signal of unique reads) 69.8 MB
ENCFF419JEJ.bam bam (transcriptome alignments) 7.8 GB
ENCFF424VFA.bigWig bigWig (plus strand signal of all reads) 68.6 MB
ENCFF432RHB.bigWig bigWig (minus strand signal of all reads) 78.4 MB
ENCFF435HLB.fastq fastq (reads) 3.2 GB
ENCFF438HSE.tsv tsv (differential expression quantifications) 4.0 MB
ENCFF445OJS.tsv tsv (gene quantifications) 10.4 MB
ENCFF451RBK.bigWig bigWig (plus strand signal of unique reads) 71.6 MB
ENCFF458KNS.bigWig bigWig (plus strand signal of all reads) 80.7 MB
ENCFF465VPI.bam bam (transcriptome alignments) 7.7 GB
ENCFF470MQX.tsv tsv (transcript quantifications) 29.9 MB
ENCFF481XNQ.bigWig bigWig (plus strand signal of unique reads) 72.2 MB
ENCFF508QNI.fastq fastq (reads) 3.7 GB
ENCFF511KFD.bam bam (alignments) 5.4 GB
ENCFF519NJO.bigWig bigWig (plus strand signal of all reads) 79.5 MB
ENCFF522YUV.tsv tsv (transcript quantifications) 29.9 MB
ENCFF526JZW.bigWig bigWig (minus strand signal of unique reads) 61.9 MB
ENCFF527PPL.bam bam (transcriptome alignments) 6.7 GB
ENCFF542ZHF.bam bam (alignments) 5.2 GB
ENCFF545RYW.bigWig bigWig (minus strand signal of all reads) 68.6 MB
ENCFF550YQP.tsv tsv (transcript quantifications) 27.4 MB
ENCFF559ZPM.bigWig bigWig (minus strand signal of unique reads) 62.7 MB
ENCFF577DNS.bigWig bigWig (minus strand signal of all reads) 69.2 MB
ENCFF590ZNK.bigWig bigWig (plus strand signal of all reads) 70.3 MB
ENCFF602CHO.tar tar (differential splicing quantifications) 3.3 MB
ENCFF608NLU.bigWig bigWig (plus strand signal of unique reads) 64.4 MB
ENCFF657GFM.bigWig bigWig (minus strand signal of unique reads) 70.3 MB
ENCFF683UDV.bam bam (transcriptome alignments) 8.9 GB
ENCFF686ZID.bigWig bigWig (minus strand signal of all reads) 69.9 MB
ENCFF709JYV.bam bam (alignments) 5.5 GB
ENCFF710UYE.bigWig bigWig (minus strand signal of unique reads) 63.4 MB
ENCFF720XOT.tsv tsv (gene quantifications) 9.5 MB
ENCFF731IFF.bam bam (alignments) 6.5 GB
ENCFF749CMO.bigWig bigWig (minus strand signal of all reads) 66.2 MB
ENCFF762AHL.bigWig bigWig (minus strand signal of unique reads) 70.0 MB
ENCFF762WQA.tar tar (differential splicing quantifications) 14.8 MB
ENCFF765ONB.bigWig bigWig (plus strand signal of unique reads) 71.7 MB
ENCFF784GVC.bigWig bigWig (minus strand signal of unique reads) 69.9 MB
ENCFF784YHA.bigWig bigWig (minus strand signal of all reads) 78.4 MB
ENCFF790NSC.bam bam (alignments) 5.5 GB
ENCFF794KLV.bam bam (alignments) 6.5 GB
ENCFF809YGE.bam bam (transcriptome alignments) 6.7 GB
ENCFF811VYB.tsv tsv (transcript quantifications) 25.4 MB
ENCFF827DJX.bigWig bigWig (plus strand signal of all reads) 71.2 MB
ENCFF832XZP.bigWig bigWig (minus strand signal of unique reads) 69.8 MB
ENCFF843UDV.bigWig bigWig (plus strand signal of all reads) 79.9 MB
ENCFF868MHA.bigWig bigWig (plus strand signal of all reads) 79.7 MB
ENCFF880HKN.bam bam (alignments) 6.3 GB
ENCFF892JDL.bigWig bigWig (plus strand signal of unique reads) 71.9 MB
ENCFF902XYM.bigWig bigWig (plus strand signal of unique reads) 65.1 MB
ENCFF918DVB.bigWig bigWig (minus strand signal of all reads) 78.4 MB
ENCFF927XKW.bam bam (transcriptome alignments) 7.8 GB
ENCFF935SMK.tsv tsv (transcript quantifications) 25.0 MB
ENCFF937FCB.tsv tsv (transcript quantifications) 27.2 MB
ENCFF941HFS.bigWig bigWig (plus strand signal of all reads) 69.9 MB
ENCFF942JDC.bam bam (alignments) 5.4 GB
ENCFF946VPZ.bam bam (alignments) 4.5 GB
ENCFF952EMJ.bigWig bigWig (minus strand signal of unique reads) 63.0 MB
ENCFF977SZT.bigWig bigWig (plus strand signal of unique reads) 71.7 MB
ENCFF977TBU.bigWig bigWig (minus strand signal of unique reads) 70.3 MB
ENCFF991IZT.bigWig bigWig (plus strand signal of unique reads) 65.5 MB
ENCSR105OXX ENCSR · via encode_api

shRNA knockdown against MARK2 in HepG2 cells followed by RNA-seq. (MARK2_BGHLV18)

Homo sapiens

92 data files
FileTypeSize
ENCFF013DMH.bam bam (alignments) 3.2 GB
ENCFF026IRI.fastq fastq (reads) 1.5 GB
ENCFF030OGM.bam bam (transcriptome alignments) 3.4 GB
ENCFF036NDL.tsv tsv (differential expression quantifications) 4.1 MB
ENCFF063DVX.bam bam (alignments) 3.2 GB
ENCFF065XJN.bigWig bigWig (plus strand signal of all reads) 64.6 MB
ENCFF084DLR.bigWig bigWig (minus strand signal of unique reads) 53.9 MB
ENCFF100AUX.bigWig bigWig (plus strand signal of unique reads) 55.6 MB
ENCFF100QEP.bigWig bigWig (minus strand signal of all reads) 59.4 MB
ENCFF112JCE.bam bam (alignments) 3.6 GB
ENCFF123FGM.fastq fastq (reads) 1.7 GB
ENCFF131THC.bigWig bigWig (minus strand signal of all reads) 54.1 MB
ENCFF131VUW.bigWig bigWig (plus strand signal of all reads) 66.7 MB
ENCFF140ZSY.bigWig bigWig (plus strand signal of unique reads) 59.1 MB
ENCFF146JTL.bigWig bigWig (plus strand signal of all reads) 66.7 MB
ENCFF170AYD.bigWig bigWig (plus strand signal of all reads) 59.2 MB
ENCFF172VIE.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF177ZKH.bigWig bigWig (minus strand signal of all reads) 57.3 MB
ENCFF182ZRB.tsv tsv (transcript quantifications) 25.2 MB
ENCFF189ACN.bigWig bigWig (minus strand signal of all reads) 63.8 MB
ENCFF202BXC.bigWig bigWig (plus strand signal of all reads) 65.2 MB
ENCFF214ZFH.tsv tsv (gene quantifications) 10.4 MB
ENCFF217AYB.tsv tsv (gene quantifications) 10.4 MB
ENCFF240NSN.tsv tsv (transcript quantifications) 29.7 MB
ENCFF253BMU.bigWig bigWig (plus strand signal of unique reads) 58.2 MB
ENCFF256VHF.bigWig bigWig (plus strand signal of unique reads) 61.1 MB
ENCFF256VXK.bigWig bigWig (minus strand signal of unique reads) 59.4 MB
ENCFF266HWP.bigWig bigWig (minus strand signal of unique reads) 53.9 MB
ENCFF270TBB.bigWig bigWig (plus strand signal of unique reads) 58.3 MB
ENCFF284UTZ.bigWig bigWig (plus strand signal of unique reads) 55.8 MB
ENCFF294MIQ.bam bam (alignments) 2.8 GB
ENCFF309LPE.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF321GGD.bam bam (transcriptome alignments) 3.3 GB
ENCFF358ZZR.tsv tsv (gene quantifications) 9.4 MB
ENCFF367YUI.bigWig bigWig (minus strand signal of unique reads) 57.1 MB
ENCFF390SHS.fastq fastq (reads) 1.6 GB
ENCFF393PFC.bam bam (alignments) 2.6 GB
ENCFF393QCL.bam bam (alignments) 2.4 GB
ENCFF397OGB.bigWig bigWig (minus strand signal of all reads) 63.4 MB
ENCFF400GMD.tsv tsv (gene quantifications) 9.4 MB
ENCFF406SHJ.bigWig bigWig (plus strand signal of unique reads) 60.5 MB
ENCFF423IWI.bam bam (alignments) 2.8 GB
ENCFF424WZH.bigWig bigWig (minus strand signal of all reads) 65.5 MB
ENCFF446FTR.bam bam (alignments) 3.6 GB
ENCFF446JAW.bam bam (transcriptome alignments) 4.4 GB
ENCFF448IEG.tsv tsv (transcript quantifications) 27.3 MB
ENCFF450QIC.fastq fastq (reads) 1.7 GB
ENCFF467PTD.bigWig bigWig (plus strand signal of all reads) 55.5 MB
ENCFF489RGA.bigWig bigWig (minus strand signal of unique reads) 58.8 MB
ENCFF495UFT.bigWig bigWig (plus strand signal of unique reads) 57.8 MB
ENCFF500LCU.bigWig bigWig (minus strand signal of all reads) 63.8 MB
ENCFF524VLR.tsv tsv (transcript quantifications) 24.8 MB
ENCFF530XSE.bam bam (transcriptome alignments) 3.9 GB
ENCFF560JUY.bigWig bigWig (minus strand signal of all reads) 65.3 MB
ENCFF568TFL.tsv tsv (transcript quantifications) 29.7 MB
ENCFF600SLF.tsv tsv (transcript quantifications) 27.2 MB
ENCFF601ZPV.bigWig bigWig (minus strand signal of unique reads) 50.6 MB
ENCFF605LLZ.tsv tsv (gene quantifications) 9.1 MB
ENCFF609AYR.bam bam (transcriptome alignments) 3.9 GB
ENCFF645GYV.bigWig bigWig (minus strand signal of unique reads) 57.4 MB
ENCFF654OIB.bigWig bigWig (plus strand signal of all reads) 61.6 MB
ENCFF661BMK.bigWig bigWig (plus strand signal of all reads) 58.6 MB
ENCFF669NYJ.bigWig bigWig (minus strand signal of all reads) 57.8 MB
ENCFF678VLE.bigWig bigWig (minus strand signal of all reads) 57.5 MB
ENCFF680FBE.bigWig bigWig (plus strand signal of all reads) 60.7 MB
ENCFF680ZHQ.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF683GES.bam bam (alignments) 2.4 GB
ENCFF692GMY.bam bam (alignments) 3.1 GB
ENCFF697XWR.bigWig bigWig (minus strand signal of unique reads) 56.3 MB
ENCFF712ATN.bigWig bigWig (minus strand signal of unique reads) 56.7 MB
ENCFF717ZYQ.bigWig bigWig (plus strand signal of all reads) 66.7 MB
ENCFF732RYG.tsv tsv (transcript quantifications) 24.9 MB
ENCFF754RFJ.bigWig bigWig (minus strand signal of unique reads) 56.5 MB
ENCFF762OHA.bigWig bigWig (minus strand signal of unique reads) 54.2 MB
ENCFF763SSD.bam bam (transcriptome alignments) 3.8 GB
ENCFF774EEP.tar tar (differential splicing quantifications) 2.9 MB
ENCFF792JJI.bigWig bigWig (plus strand signal of unique reads) 55.4 MB
ENCFF817UFI.bigWig bigWig (plus strand signal of all reads) 65.2 MB
ENCFF839CKH.bigWig bigWig (plus strand signal of unique reads) 61.1 MB
ENCFF848MTD.bam bam (alignments) 2.7 GB
ENCFF865DXQ.bam bam (alignments) 2.6 GB
ENCFF882IIV.bigWig bigWig (minus strand signal of all reads) 60.2 MB
ENCFF889RQS.tsv tsv (transcript quantifications) 25.3 MB
ENCFF890SEY.bigWig bigWig (minus strand signal of unique reads) 59.4 MB
ENCFF911WEF.bigWig bigWig (plus strand signal of unique reads) 52.2 MB
ENCFF911XRS.tar tar (differential splicing quantifications) 14.3 MB
ENCFF912ENU.bigWig bigWig (plus strand signal of all reads) 58.9 MB
ENCFF944TSN.bigWig bigWig (plus strand signal of unique reads) 58.7 MB
ENCFF960HUM.tsv tsv (gene quantifications) 9.1 MB
ENCFF970ZZS.bigWig bigWig (minus strand signal of all reads) 65.3 MB
ENCFF991HCL.tsv tsv (differential expression quantifications) 2.8 MB
ENCFF999ZQH.tar tar (differential splicing quantifications) 3.3 MB
ENCSR777EDL ENCSR · via encode_api

RNA-seq on K562 cells treated with an shRNA knockdown against STAU1. (STAU1_BGKLV29)

Homo sapiens

92 data files
FileTypeSize
ENCFF016TDT.bigWig bigWig (minus strand signal of all reads) 109.2 MB
ENCFF017SGY.bigWig bigWig (plus strand signal of unique reads) 89.6 MB
ENCFF018MCR.tar tar (differential splicing quantifications) 5.0 MB
ENCFF020SEE.tsv tsv (differential expression quantifications) 2.0 MB
ENCFF022ONS.bigWig bigWig (minus strand signal of unique reads) 100.1 MB
ENCFF032DMH.bam bam (alignments) 5.6 GB
ENCFF061IUF.bigWig bigWig (plus strand signal of unique reads) 101.4 MB
ENCFF067BHM.bam bam (alignments) 5.5 GB
ENCFF075BDS.bigWig bigWig (minus strand signal of all reads) 109.2 MB
ENCFF092DAM.bigWig bigWig (plus strand signal of all reads) 96.1 MB
ENCFF121EAJ.bigWig bigWig (plus strand signal of all reads) 98.5 MB
ENCFF121YKY.bigWig bigWig (plus strand signal of all reads) 94.5 MB
ENCFF136KAS.bam bam (alignments) 5.5 GB
ENCFF138JCR.bigWig bigWig (plus strand signal of all reads) 108.8 MB
ENCFF138TNF.bigWig bigWig (minus strand signal of unique reads) 92.0 MB
ENCFF185LEK.tsv tsv (gene quantifications) 10.4 MB
ENCFF186QFP.tsv tsv (transcript quantifications) 29.9 MB
ENCFF226BWN.bigWig bigWig (minus strand signal of unique reads) 88.6 MB
ENCFF231SCY.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF233LDN.bigWig bigWig (minus strand signal of unique reads) 95.5 MB
ENCFF249MJB.bigWig bigWig (plus strand signal of all reads) 110.2 MB
ENCFF252YHM.tsv tsv (gene quantifications) 9.5 MB
ENCFF263CBG.bigWig bigWig (minus strand signal of unique reads) 89.3 MB
ENCFF272XAT.tsv tsv (transcript quantifications) 25.4 MB
ENCFF300EZK.bigWig bigWig (minus strand signal of unique reads) 84.4 MB
ENCFF314GPB.bigWig bigWig (plus strand signal of all reads) 113.0 MB
ENCFF315FGI.tar tar (differential splicing quantifications) 4.1 MB
ENCFF323XKF.bigWig bigWig (minus strand signal of all reads) 114.3 MB
ENCFF340UTU.bam bam (alignments) 6.7 GB
ENCFF348DVP.tsv tsv (transcript quantifications) 27.3 MB
ENCFF352RZJ.bigWig bigWig (minus strand signal of all reads) 97.7 MB
ENCFF362FWR.bigWig bigWig (plus strand signal of all reads) 115.5 MB
ENCFF373CPL.bigWig bigWig (minus strand signal of all reads) 93.0 MB
ENCFF376EIQ.fastq fastq (reads) 3.8 GB
ENCFF387RDW.bam bam (transcriptome alignments) 6.5 GB
ENCFF394RFA.fastq fastq (reads) 3.2 GB
ENCFF396IPD.bam bam (alignments) 5.6 GB
ENCFF406PSD.bam bam (transcriptome alignments) 7.9 GB
ENCFF413PWQ.bam bam (alignments) 6.8 GB
ENCFF431ARJ.bam bam (alignments) 6.8 GB
ENCFF431OIF.bigWig bigWig (minus strand signal of all reads) 97.1 MB
ENCFF444RML.bigWig bigWig (minus strand signal of all reads) 102.9 MB
ENCFF448QMG.bigWig bigWig (minus strand signal of unique reads) 93.7 MB
ENCFF450SIR.bam bam (transcriptome alignments) 9.0 GB
ENCFF473KMK.bigWig bigWig (plus strand signal of unique reads) 86.4 MB
ENCFF479HWO.bam bam (transcriptome alignments) 7.9 GB
ENCFF480HQD.bigWig bigWig (plus strand signal of unique reads) 90.6 MB
ENCFF488ROZ.tsv tsv (transcript quantifications) 27.4 MB
ENCFF494XSS.bigWig bigWig (minus strand signal of all reads) 99.9 MB
ENCFF516DBT.tsv tsv (transcript quantifications) 25.4 MB
ENCFF518OCZ.bigWig bigWig (plus strand signal of unique reads) 95.8 MB
ENCFF520VEF.bigWig bigWig (minus strand signal of all reads) 114.3 MB
ENCFF536KGH.bigWig bigWig (minus strand signal of all reads) 95.2 MB
ENCFF551ZGQ.bam bam (alignments) 5.7 GB
ENCFF575BOM.tsv tsv (gene quantifications) 9.1 MB
ENCFF579GNE.bam bam (alignments) 4.6 GB
ENCFF580VRV.bam bam (alignments) 5.7 GB
ENCFF585EHE.bam bam (transcriptome alignments) 6.4 GB
ENCFF602TCI.bigWig bigWig (plus strand signal of unique reads) 97.2 MB
ENCFF624QFX.bigWig bigWig (plus strand signal of unique reads) 97.3 MB
ENCFF640MBX.tsv tsv (gene quantifications) 9.1 MB
ENCFF658WPI.tsv tsv (gene quantifications) 9.5 MB
ENCFF684RMT.tsv tsv (differential expression quantifications) 4.4 MB
ENCFF692AQX.bigWig bigWig (minus strand signal of all reads) 107.7 MB
ENCFF707FSV.tsv tsv (transcript quantifications) 24.9 MB
ENCFF719YUB.bigWig bigWig (plus strand signal of unique reads) 101.4 MB
ENCFF720WZR.bam bam (transcriptome alignments) 7.4 GB
ENCFF722NGG.bigWig bigWig (plus strand signal of all reads) 99.2 MB
ENCFF723BKA.bigWig bigWig (plus strand signal of all reads) 110.2 MB
ENCFF791MUU.tar tar (differential splicing quantifications) 15.9 MB
ENCFF798DTH.fastq fastq (reads) 3.1 GB
ENCFF799FSS.fastq fastq (reads) 3.8 GB
ENCFF810UFN.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF818PRI.bigWig bigWig (plus strand signal of all reads) 104.5 MB
ENCFF822LZL.bam bam (alignments) 4.6 GB
ENCFF833KGO.bigWig bigWig (minus strand signal of unique reads) 88.0 MB
ENCFF846TLX.bigWig bigWig (minus strand signal of unique reads) 95.5 MB
ENCFF854TUF.bigWig bigWig (minus strand signal of all reads) 111.8 MB
ENCFF877WGX.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF891SPS.bigWig bigWig (plus strand signal of all reads) 115.5 MB
ENCFF917TJD.bigWig bigWig (plus strand signal of unique reads) 91.6 MB
ENCFF927LFV.bam bam (alignments) 4.6 GB
ENCFF930LHS.bigWig bigWig (minus strand signal of unique reads) 99.4 MB
ENCFF933IET.bigWig bigWig (plus strand signal of unique reads) 102.3 MB
ENCFF952MFH.bigWig bigWig (plus strand signal of all reads) 100.9 MB
ENCFF969AMU.tsv tsv (transcript quantifications) 24.9 MB
ENCFF978FUY.tsv tsv (gene quantifications) 10.4 MB
ENCFF984MQU.bigWig bigWig (plus strand signal of unique reads) 97.3 MB
ENCFF990TQJ.bigWig bigWig (minus strand signal of unique reads) 99.4 MB
ENCFF994EXE.bigWig bigWig (minus strand signal of unique reads) 95.2 MB
ENCFF995OOA.bigWig bigWig (plus strand signal of unique reads) 93.7 MB
ENCFF996WZO.tsv tsv (transcript quantifications) 29.9 MB
ENCSR695XOD ENCSR · via encode_api

RNA-seq on HepG2 cells treated with an shRNA knockdown against CUGBP1. (CUGBP1-BGHLV23)

Homo sapiens

92 data files
FileTypeSize
ENCFF005ODQ.tar tar (differential splicing quantifications) 4.5 MB
ENCFF011KYY.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF020UUY.bam bam (alignments) 4.2 GB
ENCFF036IYF.tsv tsv (gene quantifications) 9.5 MB
ENCFF048GXW.bigWig bigWig (plus strand signal of all reads) 69.4 MB
ENCFF054ZMS.bigWig bigWig (minus strand signal of all reads) 76.0 MB
ENCFF072WMQ.bam bam (transcriptome alignments) 6.9 GB
ENCFF076AUY.bam bam (transcriptome alignments) 6.2 GB
ENCFF079ZUK.bigWig bigWig (plus strand signal of all reads) 74.9 MB
ENCFF081XQU.tsv tsv (transcript quantifications) 27.3 MB
ENCFF082FOH.bam bam (alignments) 4.2 GB
ENCFF116SLQ.bigWig bigWig (plus strand signal of all reads) 71.1 MB
ENCFF152OCL.bigWig bigWig (minus strand signal of unique reads) 70.2 MB
ENCFF157TEL.bigWig bigWig (minus strand signal of unique reads) 67.6 MB
ENCFF166RLP.bigWig bigWig (minus strand signal of all reads) 76.0 MB
ENCFF174BTF.bigWig bigWig (plus strand signal of all reads) 76.7 MB
ENCFF200ZRU.bigWig bigWig (minus strand signal of all reads) 82.4 MB
ENCFF213EMO.bigWig bigWig (plus strand signal of all reads) 83.3 MB
ENCFF239HMR.bigWig bigWig (plus strand signal of unique reads) 75.4 MB
ENCFF249MFH.bigWig bigWig (minus strand signal of unique reads) 67.7 MB
ENCFF254HOU.bigWig bigWig (minus strand signal of unique reads) 67.3 MB
ENCFF256QMG.bigWig bigWig (plus strand signal of unique reads) 75.5 MB
ENCFF268FAH.bigWig bigWig (plus strand signal of unique reads) 72.3 MB
ENCFF268ZEM.bam bam (transcriptome alignments) 7.1 GB
ENCFF276QRL.tar tar (differential splicing quantifications) 17.4 MB
ENCFF305VLR.bam bam (transcriptome alignments) 6.2 GB
ENCFF315XSA.bam bam (alignments) 5.2 GB
ENCFF322DMI.bigWig bigWig (minus strand signal of all reads) 74.7 MB
ENCFF331SMM.bigWig bigWig (minus strand signal of all reads) 69.6 MB
ENCFF345GJH.tar tar (differential splicing quantifications) 3.5 MB
ENCFF354EXV.bigWig bigWig (plus strand signal of unique reads) 65.6 MB
ENCFF365ZIE.bigWig bigWig (minus strand signal of all reads) 68.3 MB
ENCFF397MRU.fastq fastq (reads) 2.7 GB
ENCFF398RWD.bigWig bigWig (plus strand signal of unique reads) 69.8 MB
ENCFF407CXB.bam bam (alignments) 5.2 GB
ENCFF424VPS.bigWig bigWig (plus strand signal of all reads) 69.9 MB
ENCFF432ZCE.tsv tsv (transcript quantifications) 24.9 MB
ENCFF433KSV.bigWig bigWig (minus strand signal of unique reads) 63.2 MB
ENCFF442WDU.bigWig bigWig (minus strand signal of all reads) 75.4 MB
ENCFF449FUS.bigWig bigWig (plus strand signal of unique reads) 66.3 MB
ENCFF462CLE.bigWig bigWig (minus strand signal of all reads) 73.4 MB
ENCFF464STX.bam bam (alignments) 4.0 GB
ENCFF488GVQ.bam bam (transcriptome alignments) 6.4 GB
ENCFF513IWU.bam bam (alignments) 4.9 GB
ENCFF514GBX.tsv tsv (transcript quantifications) 29.8 MB
ENCFF529SHX.bam bam (alignments) 4.7 GB
ENCFF530EUL.bigWig bigWig (plus strand signal of all reads) 74.0 MB
ENCFF560INU.bigWig bigWig (minus strand signal of unique reads) 69.3 MB
ENCFF563QUD.bigWig bigWig (plus strand signal of unique reads) 75.2 MB
ENCFF570WKA.tsv tsv (gene quantifications) 9.5 MB
ENCFF584BZV.bam bam (alignments) 4.4 GB
ENCFF630HJY.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF640PZO.tsv tsv (gene quantifications) 10.4 MB
ENCFF640RWA.tsv tsv (transcript quantifications) 29.8 MB
ENCFF644RKU.bigWig bigWig (plus strand signal of all reads) 84.1 MB
ENCFF655NZT.bigWig bigWig (minus strand signal of unique reads) 67.4 MB
ENCFF659TLA.bigWig bigWig (plus strand signal of all reads) 77.5 MB
ENCFF660TYY.bigWig bigWig (minus strand signal of unique reads) 63.8 MB
ENCFF678BJI.tsv tsv (transcript quantifications) 25.3 MB
ENCFF686WWE.fastq fastq (reads) 2.6 GB
ENCFF700OTM.bigWig bigWig (minus strand signal of all reads) 82.5 MB
ENCFF716YLR.bam bam (alignments) 4.9 GB
ENCFF736IHK.tsv tsv (transcript quantifications) 24.9 MB
ENCFF743ZRR.tsv tsv (differential expression quantifications) 4.4 MB
ENCFF746IFC.bigWig bigWig (minus strand signal of all reads) 68.1 MB
ENCFF750SPS.bigWig bigWig (plus strand signal of all reads) 76.4 MB
ENCFF758TIU.bam bam (transcriptome alignments) 6.4 GB
ENCFF772TMH.bigWig bigWig (plus strand signal of unique reads) 71.3 MB
ENCFF774FNV.bigWig bigWig (minus strand signal of unique reads) 73.1 MB
ENCFF794DHL.bigWig bigWig (minus strand signal of unique reads) 73.2 MB
ENCFF796LWG.bigWig bigWig (plus strand signal of unique reads) 69.5 MB
ENCFF800OHH.bigWig bigWig (plus strand signal of unique reads) 69.3 MB
ENCFF801TRT.fastq fastq (reads) 2.6 GB
ENCFF806ZHN.tsv tsv (gene quantifications) 10.4 MB
ENCFF808DRR.bigWig bigWig (plus strand signal of unique reads) 69.2 MB
ENCFF809IQE.bigWig bigWig (minus strand signal of unique reads) 73.3 MB
ENCFF858NBJ.fastq fastq (reads) 2.7 GB
ENCFF881KAU.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF890BMK.tsv tsv (differential expression quantifications) 3.0 MB
ENCFF901ZVX.bigWig bigWig (plus strand signal of unique reads) 65.2 MB
ENCFF904WTD.tsv tsv (transcript quantifications) 25.3 MB
ENCFF907XFQ.bigWig bigWig (plus strand signal of all reads) 77.5 MB
ENCFF916TIA.bigWig bigWig (minus strand signal of all reads) 72.4 MB
ENCFF925PJI.bam bam (alignments) 4.0 GB
ENCFF926KSZ.tsv tsv (transcript quantifications) 27.3 MB
ENCFF930GUU.bam bam (alignments) 4.1 GB
ENCFF936KDN.bigWig bigWig (plus strand signal of all reads) 84.1 MB
ENCFF945FGY.bigWig bigWig (minus strand signal of unique reads) 64.4 MB
ENCFF954UFS.bigWig bigWig (minus strand signal of all reads) 81.8 MB
ENCFF959UJT.tsv tsv (gene quantifications) 9.1 MB
ENCFF965ZBQ.bam bam (alignments) 4.9 GB
ENCFF975NIV.tsv tsv (gene quantifications) 9.1 MB
ENCSR685JXU ENCSR · via encode_api

shRNA knockdown against RCC2 in HepG2 cells followed by RNA-seq. (RCC2_BGHLV18)

Homo sapiens

92 data files
FileTypeSize
ENCFF015WJN.tsv tsv (transcript quantifications) 29.7 MB
ENCFF020DQT.bigWig bigWig (minus strand signal of all reads) 46.2 MB
ENCFF028BLN.bam bam (alignments) 2.0 GB
ENCFF036IVH.bigWig bigWig (minus strand signal of all reads) 88.5 MB
ENCFF040PLS.bigWig bigWig (minus strand signal of unique reads) 82.5 MB
ENCFF044AUI.bigWig bigWig (plus strand signal of all reads) 99.1 MB
ENCFF051QCU.bigWig bigWig (minus strand signal of unique reads) 87.9 MB
ENCFF058NLS.bigWig bigWig (plus strand signal of unique reads) 42.5 MB
ENCFF061SST.bam bam (alignments) 2.0 GB
ENCFF067XSP.bigWig bigWig (minus strand signal of unique reads) 39.5 MB
ENCFF092CPZ.tsv tsv (transcript quantifications) 25.3 MB
ENCFF108PFJ.tar tar (differential splicing quantifications) 3.9 MB
ENCFF113NST.tsv tsv (differential expression quantifications) 5.5 MB
ENCFF132PMP.bigWig bigWig (minus strand signal of all reads) 46.2 MB
ENCFF134IDT.bigWig bigWig (plus strand signal of all reads) 91.6 MB
ENCFF153BJM.tsv tsv (transcript quantifications) 29.8 MB
ENCFF179ACA.bigWig bigWig (minus strand signal of all reads) 97.2 MB
ENCFF182OWC.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF221QTK.bigWig bigWig (plus strand signal of all reads) 46.8 MB
ENCFF224YLW.tsv tsv (gene quantifications) 9.5 MB
ENCFF245CSR.bigWig bigWig (plus strand signal of unique reads) 40.1 MB
ENCFF252SHW.bigWig bigWig (plus strand signal of all reads) 98.4 MB
ENCFF260WTM.tsv tsv (gene quantifications) 10.4 MB
ENCFF267UFO.bam bam (alignments) 6.1 GB
ENCFF271CVB.bam bam (transcriptome alignments) 3.3 GB
ENCFF296JDF.bam bam (alignments) 5.2 GB
ENCFF297SKO.bigWig bigWig (plus strand signal of unique reads) 85.1 MB
ENCFF299WKC.bam bam (transcriptome alignments) 2.9 GB
ENCFF332QQW.bigWig bigWig (minus strand signal of unique reads) 41.4 MB
ENCFF340IZI.bigWig bigWig (plus strand signal of all reads) 43.2 MB
ENCFF347MQW.bigWig bigWig (plus strand signal of all reads) 47.3 MB
ENCFF352LAN.bigWig bigWig (minus strand signal of unique reads) 41.4 MB
ENCFF354YEJ.bigWig bigWig (minus strand signal of all reads) 39.6 MB
ENCFF358QDR.bigWig bigWig (plus strand signal of all reads) 90.6 MB
ENCFF362XCP.bam bam (alignments) 2.4 GB
ENCFF380WBA.bigWig bigWig (plus strand signal of all reads) 40.6 MB
ENCFF412PPT.bigWig bigWig (plus strand signal of unique reads) 90.3 MB
ENCFF438LEK.bigWig bigWig (minus strand signal of unique reads) 82.8 MB
ENCFF451AKG.bigWig bigWig (plus strand signal of unique reads) 38.1 MB
ENCFF455HFU.bigWig bigWig (plus strand signal of unique reads) 40.6 MB
ENCFF464JGS.bam bam (alignments) 5.2 GB
ENCFF465HUQ.tsv tsv (transcript quantifications) 25.3 MB
ENCFF469WPS.bigWig bigWig (plus strand signal of unique reads) 90.4 MB
ENCFF471OOW.fastq fastq (reads) 3.5 GB
ENCFF476IYB.tsv tsv (transcript quantifications) 27.1 MB
ENCFF483MCD.tsv tsv (transcript quantifications) 24.9 MB
ENCFF497ZTJ.tsv tsv (transcript quantifications) 27.4 MB
ENCFF498LCU.bigWig bigWig (minus strand signal of unique reads) 41.3 MB
ENCFF516GLY.bam bam (alignments) 2.0 GB
ENCFF520GEU.bam bam (transcriptome alignments) 7.9 GB
ENCFF547KHO.bigWig bigWig (minus strand signal of unique reads) 37.0 MB
ENCFF553ZZF.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF566QUT.bigWig bigWig (minus strand signal of all reads) 88.5 MB
ENCFF579BBJ.bigWig bigWig (plus strand signal of unique reads) 86.6 MB
ENCFF579JLD.bigWig bigWig (plus strand signal of unique reads) 85.0 MB
ENCFF583YQA.tsv tsv (gene quantifications) 9.1 MB
ENCFF591RQE.bam bam (alignments) 2.4 GB
ENCFF594GXX.fastq fastq (reads) 1.3 GB
ENCFF603KOO.tsv tsv (differential expression quantifications) 4.3 MB
ENCFF620ZQJ.bigWig bigWig (minus strand signal of unique reads) 88.3 MB
ENCFF636BSX.bigWig bigWig (minus strand signal of all reads) 42.3 MB
ENCFF639COU.bigWig bigWig (minus strand signal of all reads) 96.7 MB
ENCFF644NFL.bigWig bigWig (minus strand signal of all reads) 41.6 MB
ENCFF676LQZ.tsv tsv (gene quantifications) 10.4 MB
ENCFF676VTQ.tar tar (differential splicing quantifications) 3.3 MB
ENCFF681ZOR.bigWig bigWig (minus strand signal of unique reads) 84.1 MB
ENCFF706HMR.bam bam (alignments) 2.3 GB
ENCFF711NTG.fastq fastq (reads) 1.3 GB
ENCFF712NJI.bigWig bigWig (minus strand signal of all reads) 97.1 MB
ENCFF729UTV.tsv tsv (transcript quantifications) 24.9 MB
ENCFF742VOQ.tsv tsv (differential expression quantifications) 1.8 MB
ENCFF745ECA.bam bam (transcriptome alignments) 2.9 GB
ENCFF750FXS.bigWig bigWig (minus strand signal of all reads) 89.6 MB
ENCFF777MNI.fastq fastq (reads) 3.4 GB
ENCFF792CDV.bigWig bigWig (plus strand signal of unique reads) 90.9 MB
ENCFF806OIZ.bam bam (transcriptome alignments) 8.0 GB
ENCFF822DIA.bam bam (alignments) 6.4 GB
ENCFF826LCG.bigWig bigWig (plus strand signal of unique reads) 42.4 MB
ENCFF851AWI.bam bam (alignments) 5.3 GB
ENCFF854YCZ.bigWig bigWig (plus strand signal of unique reads) 42.5 MB
ENCFF877CJJ.tsv tsv (gene quantifications) 9.4 MB
ENCFF900ULA.bigWig bigWig (plus strand signal of all reads) 47.3 MB
ENCFF901SPU.bigWig bigWig (plus strand signal of all reads) 90.3 MB
ENCFF908ONW.bigWig bigWig (minus strand signal of unique reads) 87.8 MB
ENCFF921AUW.bigWig bigWig (minus strand signal of unique reads) 39.1 MB
ENCFF941KJF.tsv tsv (gene quantifications) 9.1 MB
ENCFF950KLQ.bigWig bigWig (plus strand signal of all reads) 42.5 MB
ENCFF951SNF.bigWig bigWig (minus strand signal of all reads) 46.0 MB
ENCFF971JXF.bam bam (transcriptome alignments) 9.0 GB
ENCFF974NEN.tar tar (differential splicing quantifications) 14.7 MB
ENCFF978ELN.bam bam (alignments) 6.4 GB
ENCFF987IXD.bigWig bigWig (plus strand signal of all reads) 99.0 MB
ENCSR724HZI ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) pulldown experiment against SRSF9

14 data files
FileTypeSize
ENCFF042JZR.fastq fastq (reads) 375.3 MB
ENCFF081SZX.tsv tsv (enrichment) 10.0 KB
ENCFF131QFS.tsv tsv (enrichment) 688.0 KB
ENCFF305KBH.fastq fastq (reads) 403.1 MB
ENCFF349NQV.bed bed (peaks) 52.0 KB
ENCFF413ETY.fastq fastq (reads) 399.3 MB
ENCFF434EMZ.tsv tsv (library fraction) 1.1 MB
ENCFF518QQO.tsv tsv (enrichment) 41.0 KB
ENCFF779KVV.fastq fastq (reads) 469.0 MB
ENCFF808FRG.tsv tsv (enrichment) 168.0 KB
ENCFF902PZM.tsv tsv (library fraction) 15.1 KB
ENCFF904PHM.tsv tsv (library fraction) 265.5 KB
ENCFF927STX.fastq fastq (reads) 407.0 MB
ENCFF930MUF.tsv tsv (library fraction) 63.8 KB
ENCSR689PHN ENCSR · via encode_api

Control shRNA against no target in HepG2 cells followed by RNA-seq. (NT_BGHLV16)

Homo sapiens

84 data files
FileTypeSize
ENCFF010ZKR.bam bam (transcriptome alignments) 3.6 GB
ENCFF021RNS.bam bam (transcriptome alignments) 3.6 GB
ENCFF059QSM.bam bam (transcriptome alignments) 3.2 GB
ENCFF065EZU.tsv tsv (gene quantifications) 9.1 MB
ENCFF068BGO.bigWig bigWig (plus strand signal of all reads) 58.9 MB
ENCFF076FZO.tsv tsv (gene quantifications) 10.4 MB
ENCFF079OFQ.bigWig bigWig (minus strand signal of unique reads) 48.6 MB
ENCFF081DZU.tsv tsv (transcript quantifications) 25.3 MB
ENCFF087ZPL.bigWig bigWig (minus strand signal of all reads) 57.8 MB
ENCFF133ZAD.bigWig bigWig (minus strand signal of unique reads) 45.1 MB
ENCFF163KZX.bigWig bigWig (plus strand signal of unique reads) 49.6 MB
ENCFF167UHL.bigWig bigWig (minus strand signal of all reads) 48.2 MB
ENCFF175ARL.bigWig bigWig (minus strand signal of unique reads) 51.8 MB
ENCFF175DYB.tsv tsv (gene quantifications) 9.4 MB
ENCFF178XWW.bam bam (alignments) 2.4 GB
ENCFF179OIE.bam bam (transcriptome alignments) 4.0 GB
ENCFF194KUM.bigWig bigWig (minus strand signal of unique reads) 52.4 MB
ENCFF194OZX.bigWig bigWig (plus strand signal of unique reads) 48.4 MB
ENCFF201DSF.fastq fastq (reads) 1.4 GB
ENCFF205GNJ.tsv tsv (transcript quantifications) 29.7 MB
ENCFF210BWO.bigWig bigWig (plus strand signal of unique reads) 50.9 MB
ENCFF220FTF.bigWig bigWig (plus strand signal of unique reads) 53.3 MB
ENCFF221TYY.bigWig bigWig (plus strand signal of all reads) 56.6 MB
ENCFF252NVI.bigWig bigWig (plus strand signal of all reads) 58.8 MB
ENCFF257QTJ.bigWig bigWig (plus strand signal of all reads) 57.2 MB
ENCFF288CXC.tsv tsv (transcript quantifications) 24.9 MB
ENCFF314EUX.fastq fastq (reads) 1.5 GB
ENCFF317LUN.bigWig bigWig (plus strand signal of all reads) 54.0 MB
ENCFF341PZX.tsv tsv (transcript quantifications) 24.8 MB
ENCFF344ITC.fastq fastq (reads) 1.6 GB
ENCFF360MVL.bigWig bigWig (plus strand signal of unique reads) 52.5 MB
ENCFF408XYH.bigWig bigWig (minus strand signal of unique reads) 49.6 MB
ENCFF412XDW.bigWig bigWig (minus strand signal of unique reads) 50.4 MB
ENCFF423TKP.bigWig bigWig (plus strand signal of all reads) 53.4 MB
ENCFF439ZHZ.bigWig bigWig (minus strand signal of all reads) 52.9 MB
ENCFF456VWU.bam bam (alignments) 2.6 GB
ENCFF476JID.tsv tsv (transcript quantifications) 25.2 MB
ENCFF484ZJT.tsv tsv (transcript quantifications) 29.7 MB
ENCFF488OCK.bigWig bigWig (minus strand signal of all reads) 56.0 MB
ENCFF491CUD.bam bam (transcriptome alignments) 3.2 GB
ENCFF493SNX.bigWig bigWig (minus strand signal of unique reads) 52.1 MB
ENCFF528UJB.bigWig bigWig (minus strand signal of unique reads) 48.4 MB
ENCFF531IVA.bigWig bigWig (minus strand signal of unique reads) 51.0 MB
ENCFF535BUO.bigWig bigWig (minus strand signal of all reads) 57.6 MB
ENCFF547JNV.bigWig bigWig (plus strand signal of all reads) 51.4 MB
ENCFF549GGP.bigWig bigWig (plus strand signal of all reads) 52.5 MB
ENCFF551JQO.bigWig bigWig (minus strand signal of unique reads) 49.6 MB
ENCFF561UZL.bam bam (alignments) 2.4 GB
ENCFF565DZB.tsv tsv (transcript quantifications) 27.2 MB
ENCFF565WRF.bam bam (alignments) 2.9 GB
ENCFF567RCY.bigWig bigWig (plus strand signal of unique reads) 53.9 MB
ENCFF574DLW.bam bam (alignments) 2.5 GB
ENCFF588HLC.bam bam (alignments) 2.2 GB
ENCFF594ADG.bigWig bigWig (minus strand signal of all reads) 56.0 MB
ENCFF628UPI.bam bam (alignments) 2.2 GB
ENCFF642VQT.bigWig bigWig (minus strand signal of all reads) 55.6 MB
ENCFF699EGH.bigWig bigWig (plus strand signal of unique reads) 50.0 MB
ENCFF704VDO.bigWig bigWig (minus strand signal of all reads) 52.3 MB
ENCFF710REB.bam bam (alignments) 2.9 GB
ENCFF714QTK.tsv tsv (transcript quantifications) 27.2 MB
ENCFF732MFL.bigWig bigWig (minus strand signal of all reads) 50.2 MB
ENCFF784GFB.bigWig bigWig (plus strand signal of unique reads) 52.4 MB
ENCFF784XCQ.bigWig bigWig (plus strand signal of unique reads) 51.0 MB
ENCFF793WXG.fastq fastq (reads) 1.4 GB
ENCFF802ASP.bigWig bigWig (minus strand signal of all reads) 51.4 MB
ENCFF808THU.bigWig bigWig (plus strand signal of unique reads) 53.5 MB
ENCFF813RCD.tsv tsv (gene quantifications) 9.1 MB
ENCFF817MUD.bam bam (alignments) 2.6 GB
ENCFF818PMT.bigWig bigWig (minus strand signal of unique reads) 46.9 MB
ENCFF841XUP.bigWig bigWig (minus strand signal of all reads) 51.5 MB
ENCFF847AZQ.bigWig bigWig (plus strand signal of unique reads) 46.4 MB
ENCFF847SRU.bam bam (alignments) 2.8 GB
ENCFF860NAR.bigWig bigWig (plus strand signal of all reads) 49.3 MB
ENCFF862DEF.bam bam (alignments) 2.2 GB
ENCFF888EXP.bigWig bigWig (minus strand signal of unique reads) 51.1 MB
ENCFF898EWV.tsv tsv (gene quantifications) 9.4 MB
ENCFF908SZO.bigWig bigWig (plus strand signal of all reads) 52.4 MB
ENCFF914NHL.bigWig bigWig (plus strand signal of all reads) 57.2 MB
ENCFF932XXA.bigWig bigWig (plus strand signal of all reads) 58.8 MB
ENCFF974KHP.bigWig bigWig (minus strand signal of all reads) 57.6 MB
ENCFF974XMK.tsv tsv (gene quantifications) 10.4 MB
ENCFF978YGR.bam bam (alignments) 2.4 GB
ENCFF990UDD.bam bam (transcriptome alignments) 3.6 GB
ENCFF997IIP.bigWig bigWig (plus strand signal of unique reads) 51.8 MB
ENCSR471GIS ENCSR · via encode_api

shRNA knockdown against RRP9 in HepG2 cells followed by RNA-seq. (RRP9_BGHLV17)

Homo sapiens

92 data files
FileTypeSize
ENCFF004LYH.tsv tsv (transcript quantifications) 24.8 MB
ENCFF005NNX.bam bam (alignments) 3.5 GB
ENCFF008UIB.tar tar (differential splicing quantifications) 15.0 MB
ENCFF011SKK.bigWig bigWig (plus strand signal of all reads) 67.4 MB
ENCFF012ZPI.bigWig bigWig (minus strand signal of all reads) 73.6 MB
ENCFF018ZLT.tsv tsv (gene quantifications) 9.1 MB
ENCFF026BFM.bigWig bigWig (plus strand signal of all reads) 77.8 MB
ENCFF049MHA.bigWig bigWig (plus strand signal of all reads) 64.4 MB
ENCFF056CVC.tar tar (differential splicing quantifications) 3.9 MB
ENCFF061YSR.bigWig bigWig (minus strand signal of all reads) 69.6 MB
ENCFF064YCE.tsv tsv (differential expression quantifications) 4.3 MB
ENCFF065QZG.bigWig bigWig (minus strand signal of unique reads) 68.9 MB
ENCFF093PKR.bigWig bigWig (plus strand signal of unique reads) 71.0 MB
ENCFF098LON.bam bam (alignments) 3.6 GB
ENCFF102CMB.bam bam (transcriptome alignments) 4.0 GB
ENCFF107GNM.bigWig bigWig (minus strand signal of unique reads) 66.1 MB
ENCFF116JEG.bam bam (alignments) 3.0 GB
ENCFF121VTU.bigWig bigWig (minus strand signal of all reads) 68.6 MB
ENCFF128IJW.bam bam (transcriptome alignments) 4.0 GB
ENCFF133KFL.fastq fastq (reads) 1.9 GB
ENCFF134YWZ.bam bam (transcriptome alignments) 4.5 GB
ENCFF136GSD.bigWig bigWig (minus strand signal of unique reads) 69.4 MB
ENCFF144DTK.tsv tsv (transcript quantifications) 29.7 MB
ENCFF173FEQ.bam bam (alignments) 3.6 GB
ENCFF184DMC.tsv tsv (gene quantifications) 9.1 MB
ENCFF189TXC.tsv tsv (differential expression quantifications) 3.0 MB
ENCFF195UGQ.bigWig bigWig (plus strand signal of unique reads) 66.5 MB
ENCFF209PDJ.bigWig bigWig (minus strand signal of all reads) 66.4 MB
ENCFF211QST.bigWig bigWig (minus strand signal of unique reads) 69.4 MB
ENCFF216CQZ.bam bam (transcriptome alignments) 4.2 GB
ENCFF219HFS.tsv tsv (gene quantifications) 9.4 MB
ENCFF228FJY.bigWig bigWig (plus strand signal of unique reads) 67.7 MB
ENCFF246BTM.bigWig bigWig (plus strand signal of unique reads) 66.3 MB
ENCFF252SMH.tsv tsv (transcript quantifications) 27.3 MB
ENCFF254ACS.bigWig bigWig (plus strand signal of all reads) 69.7 MB
ENCFF285KAM.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF287GYR.tsv tsv (transcript quantifications) 29.7 MB
ENCFF302ANH.bigWig bigWig (minus strand signal of unique reads) 65.4 MB
ENCFF305PHR.bigWig bigWig (plus strand signal of unique reads) 60.2 MB
ENCFF312UFY.bigWig bigWig (minus strand signal of unique reads) 61.9 MB
ENCFF344VMW.bigWig bigWig (minus strand signal of all reads) 77.3 MB
ENCFF355OOS.bigWig bigWig (plus strand signal of all reads) 74.7 MB
ENCFF359BHF.bam bam (alignments) 3.4 GB
ENCFF381FMA.bigWig bigWig (plus strand signal of all reads) 70.7 MB
ENCFF386ANI.bigWig bigWig (plus strand signal of all reads) 78.4 MB
ENCFF390MYW.bigWig bigWig (plus strand signal of unique reads) 70.5 MB
ENCFF392CFK.bam bam (transcriptome alignments) 4.7 GB
ENCFF400WGZ.bigWig bigWig (plus strand signal of unique reads) 71.0 MB
ENCFF404HTT.bigWig bigWig (minus strand signal of unique reads) 61.9 MB
ENCFF410YBU.bigWig bigWig (minus strand signal of all reads) 63.2 MB
ENCFF437QEA.bam bam (alignments) 3.4 GB
ENCFF446VSA.bigWig bigWig (minus strand signal of unique reads) 58.7 MB
ENCFF468DFU.tsv tsv (transcript quantifications) 24.8 MB
ENCFF520WSY.bigWig bigWig (plus strand signal of unique reads) 63.4 MB
ENCFF528AUO.bigWig bigWig (minus strand signal of all reads) 65.1 MB
ENCFF567HNE.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF587GWV.tsv tsv (transcript quantifications) 25.2 MB
ENCFF601YTJ.bam bam (alignments) 2.9 GB
ENCFF622QWP.bigWig bigWig (minus strand signal of unique reads) 64.9 MB
ENCFF636NAP.bam bam (transcriptome alignments) 4.1 GB
ENCFF650AFW.bigWig bigWig (minus strand signal of unique reads) 65.3 MB
ENCFF664VXC.fastq fastq (reads) 1.8 GB
ENCFF679MEQ.tsv tsv (gene quantifications) 10.4 MB
ENCFF697QMH.bigWig bigWig (minus strand signal of all reads) 73.6 MB
ENCFF738VOH.bigWig bigWig (plus strand signal of all reads) 68.1 MB
ENCFF746DLF.bigWig bigWig (minus strand signal of unique reads) 61.5 MB
ENCFF749BRV.tsv tsv (transcript quantifications) 25.2 MB
ENCFF755FRU.bigWig bigWig (plus strand signal of all reads) 78.4 MB
ENCFF761ORA.tsv tsv (differential expression quantifications) 5.5 MB
ENCFF763CEH.bam bam (alignments) 2.9 GB
ENCFF770BML.bigWig bigWig (plus strand signal of unique reads) 63.0 MB
ENCFF776OOW.bigWig bigWig (minus strand signal of all reads) 67.0 MB
ENCFF778BWF.bam bam (alignments) 3.4 GB
ENCFF819AEP.bam bam (alignments) 3.0 GB
ENCFF822RXC.tsv tsv (transcript quantifications) 27.3 MB
ENCFF823DAX.tsv tsv (gene quantifications) 10.4 MB
ENCFF831MIK.bigWig bigWig (plus strand signal of unique reads) 63.2 MB
ENCFF842IYS.bigWig bigWig (minus strand signal of all reads) 76.9 MB
ENCFF852JUZ.bigWig bigWig (plus strand signal of unique reads) 67.0 MB
ENCFF859RAU.bigWig bigWig (plus strand signal of unique reads) 66.9 MB
ENCFF869DFU.bam bam (alignments) 3.0 GB
ENCFF877AOX.bigWig bigWig (plus strand signal of all reads) 74.7 MB
ENCFF891FZS.fastq fastq (reads) 1.8 GB
ENCFF905PPS.bigWig bigWig (minus strand signal of all reads) 73.2 MB
ENCFF908AKJ.tar tar (differential splicing quantifications) 3.2 MB
ENCFF908TEI.bigWig bigWig (plus strand signal of all reads) 66.1 MB
ENCFF926RXP.bigWig bigWig (minus strand signal of all reads) 77.3 MB
ENCFF943GWU.bam bam (alignments) 2.9 GB
ENCFF961FBP.bigWig bigWig (plus strand signal of all reads) 74.1 MB
ENCFF963BLJ.fastq fastq (reads) 1.9 GB
ENCFF968PEH.tsv tsv (gene quantifications) 9.4 MB
ENCFF968YRC.bigWig bigWig (minus strand signal of unique reads) 64.9 MB
ENCSR911DGK ENCSR · via encode_api

shRNA knockdown against TFIP11 in K562 cells followed by RNA-seq. (TFIP11_BGKLV19)

Homo sapiens

92 data files
FileTypeSize
ENCFF020JUU.tsv tsv (gene quantifications) 9.4 MB
ENCFF034AHC.bigWig bigWig (plus strand signal of unique reads) 74.1 MB
ENCFF045KKR.bam bam (alignments) 3.1 GB
ENCFF056UWJ.bigWig bigWig (minus strand signal of all reads) 64.9 MB
ENCFF076QUI.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF109FQE.tsv tsv (transcript quantifications) 27.3 MB
ENCFF135ZVS.bigWig bigWig (plus strand signal of all reads) 65.7 MB
ENCFF163NCF.bigWig bigWig (plus strand signal of all reads) 83.8 MB
ENCFF181LPI.bigWig bigWig (plus strand signal of all reads) 75.3 MB
ENCFF185OQU.bam bam (transcriptome alignments) 4.5 GB
ENCFF188GGA.bigWig bigWig (minus strand signal of all reads) 74.6 MB
ENCFF192UES.bigWig bigWig (minus strand signal of all reads) 58.4 MB
ENCFF195IXL.bigWig bigWig (plus strand signal of unique reads) 55.7 MB
ENCFF204PGJ.tsv tsv (differential expression quantifications) 4.1 MB
ENCFF223KPI.fastq fastq (reads) 2.0 GB
ENCFF232NRU.bigWig bigWig (plus strand signal of all reads) 76.3 MB
ENCFF242QCH.bigWig bigWig (minus strand signal of all reads) 81.1 MB
ENCFF251OKX.bam bam (alignments) 3.1 GB
ENCFF266ZAX.bigWig bigWig (plus strand signal of all reads) 55.4 MB
ENCFF297VNR.bam bam (alignments) 2.1 GB
ENCFF311BTT.bam bam (transcriptome alignments) 2.9 GB
ENCFF328HKB.bigWig bigWig (plus strand signal of all reads) 81.9 MB
ENCFF330AUH.bigWig bigWig (minus strand signal of unique reads) 73.0 MB
ENCFF357QXR.bigWig bigWig (minus strand signal of unique reads) 50.4 MB
ENCFF360HQH.bigWig bigWig (minus strand signal of unique reads) 69.5 MB
ENCFF365XJD.bam bam (alignments) 3.7 GB
ENCFF370GFR.bigWig bigWig (plus strand signal of all reads) 72.1 MB
ENCFF392ZBQ.bam bam (transcriptome alignments) 2.8 GB
ENCFF401ABX.tsv tsv (transcript quantifications) 24.9 MB
ENCFF407PAK.bam bam (alignments) 2.0 GB
ENCFF408QSD.tsv tsv (transcript quantifications) 25.2 MB
ENCFF439PUQ.bigWig bigWig (minus strand signal of all reads) 82.5 MB
ENCFF443QNW.tsv tsv (transcript quantifications) 29.7 MB
ENCFF446FMH.bigWig bigWig (minus strand signal of all reads) 58.4 MB
ENCFF451VHL.tar tar (differential splicing quantifications) 3.8 MB
ENCFF465EVR.bam bam (alignments) 2.0 GB
ENCFF492LZA.bigWig bigWig (plus strand signal of all reads) 59.0 MB
ENCFF510TNY.bigWig bigWig (minus strand signal of unique reads) 73.1 MB
ENCFF529BOV.bigWig bigWig (plus strand signal of unique reads) 74.6 MB
ENCFF529OTI.fastq fastq (reads) 2.1 GB
ENCFF538LCX.bigWig bigWig (minus strand signal of unique reads) 55.8 MB
ENCFF542CXH.bam bam (transcriptome alignments) 5.1 GB
ENCFF549TWM.bigWig bigWig (plus strand signal of unique reads) 74.7 MB
ENCFF554JUY.bam bam (transcriptome alignments) 4.5 GB
ENCFF565NSU.tar tar (differential splicing quantifications) 3.4 MB
ENCFF590GLK.bam bam (alignments) 2.4 GB
ENCFF598LQQ.tar tar (differential splicing quantifications) 14.0 MB
ENCFF600HHW.bigWig bigWig (plus strand signal of unique reads) 57.6 MB
ENCFF601ETE.bam bam (alignments) 3.2 GB
ENCFF625MTE.bigWig bigWig (minus strand signal of unique reads) 56.2 MB
ENCFF630CED.bigWig bigWig (plus strand signal of unique reads) 58.4 MB
ENCFF644APM.bigWig bigWig (plus strand signal of unique reads) 71.2 MB
ENCFF648NEB.bam bam (transcriptome alignments) 3.2 GB
ENCFF650FZM.bigWig bigWig (minus strand signal of unique reads) 65.4 MB
ENCFF657JMI.fastq fastq (reads) 1.3 GB
ENCFF666EGW.bigWig bigWig (plus strand signal of all reads) 59.4 MB
ENCFF682XUU.bam bam (alignments) 2.5 GB
ENCFF689NRS.tsv tsv (transcript quantifications) 25.3 MB
ENCFF693LTW.tsv tsv (gene quantifications) 9.1 MB
ENCFF703WZA.bigWig bigWig (minus strand signal of unique reads) 69.1 MB
ENCFF728FAS.fastq fastq (reads) 1.3 GB
ENCFF733YLG.bigWig bigWig (minus strand signal of unique reads) 55.2 MB
ENCFF747GKI.bigWig bigWig (minus strand signal of all reads) 54.4 MB
ENCFF753ZNO.tsv tsv (gene quantifications) 9.1 MB
ENCFF756OXW.tsv tsv (differential expression quantifications) 1.8 MB
ENCFF785MNC.bigWig bigWig (minus strand signal of all reads) 70.9 MB
ENCFF785OBM.bigWig bigWig (plus strand signal of all reads) 65.6 MB
ENCFF797QMC.tsv tsv (gene quantifications) 9.4 MB
ENCFF808LTM.bam bam (alignments) 3.9 GB
ENCFF811KFX.bigWig bigWig (plus strand signal of unique reads) 51.8 MB
ENCFF815RXM.tsv tsv (transcript quantifications) 27.2 MB
ENCFF820BZM.bigWig bigWig (minus strand signal of unique reads) 72.5 MB
ENCFF825PUF.bigWig bigWig (plus strand signal of all reads) 83.3 MB
ENCFF828RED.bigWig bigWig (plus strand signal of unique reads) 67.2 MB
ENCFF844RRW.tsv tsv (transcript quantifications) 29.8 MB
ENCFF868EAT.tsv tsv (gene quantifications) 10.4 MB
ENCFF875IWJ.bigWig bigWig (plus strand signal of all reads) 64.8 MB
ENCFF890WHW.bigWig bigWig (plus strand signal of unique reads) 58.1 MB
ENCFF902NCZ.bigWig bigWig (minus strand signal of all reads) 64.1 MB
ENCFF906QCV.bam bam (alignments) 2.5 GB
ENCFF907FLL.tsv tsv (differential expression quantifications) 2.8 MB
ENCFF917HYD.tsv tsv (gene quantifications) 10.4 MB
ENCFF921WJR.tsv tsv (transcript quantifications) 24.8 MB
ENCFF923CFE.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF927MAJ.bigWig bigWig (plus strand signal of unique reads) 55.3 MB
ENCFF927TLT.bigWig bigWig (plus strand signal of unique reads) 70.5 MB
ENCFF931PDB.bigWig bigWig (minus strand signal of all reads) 75.1 MB
ENCFF957BTU.bigWig bigWig (minus strand signal of unique reads) 54.2 MB
ENCFF962GGG.bigWig bigWig (minus strand signal of all reads) 82.9 MB
ENCFF985ONK.bigWig bigWig (minus strand signal of unique reads) 54.4 MB
ENCFF988HCD.bam bam (alignments) 3.9 GB
ENCFF999NXW.bigWig bigWig (minus strand signal of all reads) 64.9 MB
ENCSR382QKD ENCSR · via encode_api

RNA-seq on HepG2 cells treated with an shRNA knockdown against BUD13. (BUD13_BGHLV30)

Homo sapiens

92 data files
FileTypeSize
ENCFF002KRO.bigWig bigWig (minus strand signal of unique reads) 67.3 MB
ENCFF004SSI.bigWig bigWig (minus strand signal of unique reads) 64.9 MB
ENCFF014TTZ.bigWig bigWig (minus strand signal of unique reads) 72.4 MB
ENCFF024CRP.bam bam (alignments) 3.1 GB
ENCFF054WNJ.tsv tsv (gene quantifications) 9.1 MB
ENCFF075SBX.tsv tsv (differential expression quantifications) 1.8 MB
ENCFF079KSK.bigWig bigWig (minus strand signal of unique reads) 79.2 MB
ENCFF101AIS.tsv tsv (transcript quantifications) 25.0 MB
ENCFF101CXE.bam bam (alignments) 4.0 GB
ENCFF102EUV.tar tar (differential splicing quantifications) 3.6 MB
ENCFF104KJG.bigWig bigWig (minus strand signal of unique reads) 67.1 MB
ENCFF109WPY.tsv tsv (transcript quantifications) 29.8 MB
ENCFF122FQG.fastq fastq (reads) 2.2 GB
ENCFF131CCX.bam bam (alignments) 4.1 GB
ENCFF168IBE.bigWig bigWig (plus strand signal of unique reads) 76.8 MB
ENCFF188VBC.bigWig bigWig (minus strand signal of unique reads) 79.2 MB
ENCFF201CLY.fastq fastq (reads) 2.9 GB
ENCFF216AGP.bigWig bigWig (minus strand signal of unique reads) 67.2 MB
ENCFF218ZII.bam bam (alignments) 3.8 GB
ENCFF246BUK.bigWig bigWig (minus strand signal of all reads) 74.7 MB
ENCFF263WXR.bigWig bigWig (minus strand signal of all reads) 81.7 MB
ENCFF275KUY.bigWig bigWig (minus strand signal of unique reads) 74.7 MB
ENCFF278OAS.bam bam (transcriptome alignments) 6.0 GB
ENCFF285LEX.bigWig bigWig (plus strand signal of unique reads) 64.3 MB
ENCFF297FIJ.bigWig bigWig (plus strand signal of all reads) 76.9 MB
ENCFF297SVC.tsv tsv (gene quantifications) 10.4 MB
ENCFF317MKY.tsv tsv (gene quantifications) 10.4 MB
ENCFF333SNN.bigWig bigWig (minus strand signal of all reads) 75.2 MB
ENCFF342LPT.bigWig bigWig (plus strand signal of unique reads) 81.7 MB
ENCFF350NSR.bam bam (alignments) 5.0 GB
ENCFF351JKE.bigWig bigWig (minus strand signal of unique reads) 74.5 MB
ENCFF356IIN.fastq fastq (reads) 3.0 GB
ENCFF356STD.bigWig bigWig (plus strand signal of all reads) 83.8 MB
ENCFF361NBX.bigWig bigWig (plus strand signal of unique reads) 81.9 MB
ENCFF403EOI.tsv tsv (transcript quantifications) 25.3 MB
ENCFF411EBQ.bigWig bigWig (plus strand signal of unique reads) 77.2 MB
ENCFF414KUY.bigWig bigWig (plus strand signal of all reads) 90.6 MB
ENCFF417CSU.tsv tsv (gene quantifications) 9.5 MB
ENCFF419MWP.bam bam (transcriptome alignments) 6.8 GB
ENCFF429HRS.tsv tsv (differential expression quantifications) 4.2 MB
ENCFF433MMD.bigWig bigWig (plus strand signal of all reads) 69.1 MB
ENCFF439YWJ.tsv tsv (transcript quantifications) 24.9 MB
ENCFF441RVZ.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF450VER.bam bam (alignments) 5.0 GB
ENCFF462QWI.tar tar (differential splicing quantifications) 3.1 MB
ENCFF487CMI.bigWig bigWig (plus strand signal of unique reads) 66.3 MB
ENCFF512YYQ.bam bam (transcriptome alignments) 5.2 GB
ENCFF513GEG.bigWig bigWig (plus strand signal of unique reads) 69.1 MB
ENCFF515SLU.bigWig bigWig (plus strand signal of unique reads) 81.8 MB
ENCFF526PAV.bam bam (alignments) 4.9 GB
ENCFF539DBE.bigWig bigWig (minus strand signal of all reads) 75.2 MB
ENCFF541UDY.bigWig bigWig (minus strand signal of all reads) 88.5 MB
ENCFF549DGI.bigWig bigWig (plus strand signal of all reads) 90.6 MB
ENCFF552FBN.bigWig bigWig (minus strand signal of all reads) 69.0 MB
ENCFF559HTG.bigWig bigWig (minus strand signal of unique reads) 79.3 MB
ENCFF571FUQ.bigWig bigWig (minus strand signal of all reads) 70.1 MB
ENCFF573IRY.bigWig bigWig (plus strand signal of unique reads) 74.9 MB
ENCFF590SYC.bigWig bigWig (plus strand signal of all reads) 70.4 MB
ENCFF591JEH.bam bam (transcriptome alignments) 5.2 GB
ENCFF617GZL.tsv tsv (transcript quantifications) 29.9 MB
ENCFF662TNX.bigWig bigWig (minus strand signal of all reads) 88.5 MB
ENCFF670MEL.tsv tsv (transcript quantifications) 27.3 MB
ENCFF673TJX.bigWig bigWig (plus strand signal of all reads) 81.6 MB
ENCFF674GCG.tsv tsv (transcript quantifications) 27.3 MB
ENCFF675QHV.bigWig bigWig (minus strand signal of all reads) 88.1 MB
ENCFF700JIP.bigWig bigWig (minus strand signal of unique reads) 64.5 MB
ENCFF752FDO.bigWig bigWig (minus strand signal of all reads) 67.5 MB
ENCFF756NWG.tar tar (differential splicing quantifications) 15.5 MB
ENCFF768LTG.bigWig bigWig (plus strand signal of all reads) 76.9 MB
ENCFF781HZF.bam bam (alignments) 3.1 GB
ENCFF782ISW.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF799NJM.bigWig bigWig (minus strand signal of unique reads) 62.2 MB
ENCFF800CUC.tsv tsv (gene quantifications) 9.1 MB
ENCFF811YJS.bigWig bigWig (plus strand signal of all reads) 80.3 MB
ENCFF827UIC.tsv tsv (gene quantifications) 9.5 MB
ENCFF829EGR.bam bam (transcriptome alignments) 6.8 GB
ENCFF834IYO.bam bam (alignments) 4.0 GB
ENCFF843RNG.bigWig bigWig (plus strand signal of unique reads) 69.3 MB
ENCFF854LST.bigWig bigWig (minus strand signal of all reads) 78.2 MB
ENCFF870VSB.bam bam (alignments) 3.8 GB
ENCFF903YOL.bigWig bigWig (plus strand signal of unique reads) 66.9 MB
ENCFF906UKN.bigWig bigWig (plus strand signal of all reads) 76.2 MB
ENCFF916HYA.tsv tsv (transcript quantifications) 25.4 MB
ENCFF919RSV.bigWig bigWig (minus strand signal of all reads) 79.7 MB
ENCFF927ZEG.bigWig bigWig (plus strand signal of all reads) 90.0 MB
ENCFF940SIR.bam bam (transcriptome alignments) 7.8 GB
ENCFF944UDR.bam bam (alignments) 3.7 GB
ENCFF960YDV.bam bam (alignments) 3.1 GB
ENCFF964ZND.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF981BLK.fastq fastq (reads) 2.2 GB
ENCFF984YNV.bigWig bigWig (plus strand signal of unique reads) 69.4 MB
ENCFF989PVH.bigWig bigWig (plus strand signal of all reads) 71.7 MB
ENCSR711ZJQ ENCSR · via encode_api

RNA-seq on HepG2 cells treated with an shRNA knockdown against RBM47. (RBM47-BGHLV22)

Homo sapiens

92 data files
FileTypeSize
ENCFF002QKD.bigWig bigWig (minus strand signal of all reads) 83.3 MB
ENCFF002WBS.tsv tsv (gene quantifications) 9.1 MB
ENCFF011MCM.bigWig bigWig (plus strand signal of unique reads) 79.6 MB
ENCFF012EPU.tar tar (differential splicing quantifications) 3.8 MB
ENCFF023KDE.bigWig bigWig (plus strand signal of all reads) 80.5 MB
ENCFF036ACX.bigWig bigWig (plus strand signal of all reads) 90.6 MB
ENCFF053MKE.tsv tsv (transcript quantifications) 27.3 MB
ENCFF065SGA.fastq fastq (reads) 2.7 GB
ENCFF071CMU.tar tar (differential splicing quantifications) 15.6 MB
ENCFF099EUO.bigWig bigWig (minus strand signal of unique reads) 73.1 MB
ENCFF107NYY.tsv tsv (transcript quantifications) 24.9 MB
ENCFF109IOO.bigWig bigWig (plus strand signal of unique reads) 78.1 MB
ENCFF121EPB.bam bam (alignments) 4.3 GB
ENCFF126IYA.bigWig bigWig (minus strand signal of unique reads) 76.2 MB
ENCFF134FSP.tsv tsv (differential expression quantifications) 4.2 MB
ENCFF143FJN.bigWig bigWig (minus strand signal of all reads) 89.0 MB
ENCFF145QJM.tsv tsv (gene quantifications) 9.4 MB
ENCFF170RQY.bigWig bigWig (minus strand signal of all reads) 82.1 MB
ENCFF178GDD.bam bam (alignments) 5.2 GB
ENCFF182XJF.bigWig bigWig (plus strand signal of all reads) 90.7 MB
ENCFF183REX.bigWig bigWig (plus strand signal of all reads) 86.0 MB
ENCFF235PPE.tsv tsv (transcript quantifications) 25.3 MB
ENCFF244VZS.bigWig bigWig (plus strand signal of all reads) 81.5 MB
ENCFF261XSZ.bam bam (transcriptome alignments) 7.0 GB
ENCFF267GZC.tsv tsv (gene quantifications) 9.4 MB
ENCFF282WGS.bigWig bigWig (plus strand signal of unique reads) 82.5 MB
ENCFF286ISK.bigWig bigWig (minus strand signal of all reads) 91.2 MB
ENCFF290NJD.bam bam (alignments) 5.2 GB
ENCFF313ZMK.bigWig bigWig (minus strand signal of all reads) 84.4 MB
ENCFF333ILS.bigWig bigWig (plus strand signal of unique reads) 82.4 MB
ENCFF342ERB.bigWig bigWig (minus strand signal of unique reads) 82.1 MB
ENCFF364LVI.bigWig bigWig (minus strand signal of unique reads) 80.5 MB
ENCFF376FBR.bigWig bigWig (plus strand signal of unique reads) 75.2 MB
ENCFF381NKY.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF388IAS.tsv tsv (gene quantifications) 10.4 MB
ENCFF395NJY.fastq fastq (reads) 2.8 GB
ENCFF421ECF.bigWig bigWig (minus strand signal of all reads) 78.9 MB
ENCFF449RKX.bigWig bigWig (plus strand signal of unique reads) 84.1 MB
ENCFF459FPU.bam bam (alignments) 5.2 GB
ENCFF482GUJ.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF482NNW.bigWig bigWig (minus strand signal of all reads) 81.4 MB
ENCFF489FWV.bigWig bigWig (plus strand signal of all reads) 82.7 MB
ENCFF497XAR.bigWig bigWig (minus strand signal of all reads) 91.2 MB
ENCFF500KLH.tsv tsv (gene quantifications) 10.4 MB
ENCFF509AJJ.bigWig bigWig (minus strand signal of unique reads) 76.2 MB
ENCFF509XMA.bigWig bigWig (minus strand signal of all reads) 89.3 MB
ENCFF512YOI.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF522TEZ.bigWig bigWig (minus strand signal of unique reads) 82.1 MB
ENCFF530ZJT.tar tar (differential splicing quantifications) 3.2 MB
ENCFF537CUX.bigWig bigWig (plus strand signal of unique reads) 76.5 MB
ENCFF543ZLR.tsv tsv (transcript quantifications) 29.8 MB
ENCFF558GDF.bigWig bigWig (plus strand signal of all reads) 83.6 MB
ENCFF561COP.tsv tsv (transcript quantifications) 27.3 MB
ENCFF566YTA.bam bam (transcriptome alignments) 6.9 GB
ENCFF594AMB.bam bam (alignments) 4.4 GB
ENCFF597HYM.bam bam (alignments) 5.0 GB
ENCFF600LXX.bam bam (alignments) 4.3 GB
ENCFF602MDV.bigWig bigWig (plus strand signal of all reads) 90.2 MB
ENCFF637FHF.bam bam (alignments) 5.2 GB
ENCFF642XBM.bam bam (transcriptome alignments) 6.2 GB
ENCFF643EUO.bigWig bigWig (plus strand signal of all reads) 84.5 MB
ENCFF656CUM.fastq fastq (reads) 2.8 GB
ENCFF658GSJ.bigWig bigWig (minus strand signal of unique reads) 74.5 MB
ENCFF680QZV.bam bam (alignments) 5.1 GB
ENCFF705DCY.bigWig bigWig (plus strand signal of unique reads) 79.9 MB
ENCFF723PCC.bigWig bigWig (minus strand signal of all reads) 91.3 MB
ENCFF751RPR.bigWig bigWig (plus strand signal of unique reads) 78.2 MB
ENCFF783ZFL.bigWig bigWig (plus strand signal of all reads) 92.6 MB
ENCFF790BPC.bigWig bigWig (plus strand signal of unique reads) 84.1 MB
ENCFF821DBS.bam bam (alignments) 4.3 GB
ENCFF845VWN.bigWig bigWig (plus strand signal of all reads) 92.5 MB
ENCFF846UCS.tsv tsv (transcript quantifications) 24.9 MB
ENCFF855JQF.bam bam (alignments) 4.5 GB
ENCFF865YSO.bigWig bigWig (minus strand signal of all reads) 89.3 MB
ENCFF866NZE.bigWig bigWig (minus strand signal of all reads) 80.0 MB
ENCFF867LFJ.tsv tsv (gene quantifications) 9.1 MB
ENCFF869KXP.bigWig bigWig (plus strand signal of unique reads) 84.8 MB
ENCFF869OIZ.bigWig bigWig (minus strand signal of unique reads) 77.6 MB
ENCFF881UVW.bigWig bigWig (plus strand signal of unique reads) 82.4 MB
ENCFF883GDN.bam bam (alignments) 4.4 GB
ENCFF888BUD.bigWig bigWig (plus strand signal of all reads) 92.5 MB
ENCFF892ZNY.bam bam (transcriptome alignments) 6.3 GB
ENCFF893PLO.bigWig bigWig (minus strand signal of unique reads) 80.3 MB
ENCFF904VYN.tsv tsv (transcript quantifications) 25.3 MB
ENCFF932CEB.bam bam (transcriptome alignments) 6.3 GB
ENCFF943XNR.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF945MNJ.bigWig bigWig (minus strand signal of unique reads) 78.1 MB
ENCFF945ZZP.bigWig bigWig (minus strand signal of unique reads) 82.7 MB
ENCFF972CXM.bigWig bigWig (minus strand signal of unique reads) 80.4 MB
ENCFF984QOE.tsv tsv (transcript quantifications) 29.8 MB
ENCFF989NPW.fastq fastq (reads) 2.7 GB
ENCFF997RMQ.bam bam (transcriptome alignments) 6.2 GB
ENCSR474BVN ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) input control experiment of PUF60

1 data file
FileTypeSize
ENCFF871MJA.fastq fastq (reads) 405.1 MB
ENCSR524YXQ ENCSR · via encode_api

RNA-seq on K562 cells treated with an shRNA knockdown against SRPK2. (SRPK2_BGKLV34)

Homo sapiens

92 data files
FileTypeSize
ENCFF011PVW.bam bam (alignments) 6.3 GB
ENCFF026QCC.tsv tsv (transcript quantifications) 29.8 MB
ENCFF033DJA.bam bam (alignments) 6.5 GB
ENCFF035UTG.bam bam (transcriptome alignments) 7.9 GB
ENCFF051KLI.bigWig bigWig (minus strand signal of all reads) 103.1 MB
ENCFF065CST.bam bam (alignments) 5.8 GB
ENCFF070VHE.bigWig bigWig (minus strand signal of unique reads) 106.5 MB
ENCFF081ZZZ.bam bam (alignments) 5.2 GB
ENCFF115NDC.bigWig bigWig (plus strand signal of unique reads) 100.8 MB
ENCFF159GRG.bigWig bigWig (plus strand signal of unique reads) 91.9 MB
ENCFF171GSN.tsv tsv (gene quantifications) 9.1 MB
ENCFF190SLT.bigWig bigWig (minus strand signal of unique reads) 100.7 MB
ENCFF201HPD.bigWig bigWig (minus strand signal of unique reads) 88.9 MB
ENCFF212MES.bigWig bigWig (minus strand signal of unique reads) 100.1 MB
ENCFF214YJV.bam bam (alignments) 5.7 GB
ENCFF227MQI.tsv tsv (gene quantifications) 9.1 MB
ENCFF246CQO.tsv tsv (transcript quantifications) 24.9 MB
ENCFF248PUG.bigWig bigWig (plus strand signal of all reads) 115.7 MB
ENCFF256ZZG.bam bam (alignments) 6.5 GB
ENCFF274EOR.bam bam (transcriptome alignments) 8.7 GB
ENCFF283RTQ.bigWig bigWig (minus strand signal of unique reads) 106.3 MB
ENCFF284LMD.bigWig bigWig (plus strand signal of all reads) 108.9 MB
ENCFF297UQX.bigWig bigWig (plus strand signal of unique reads) 109.3 MB
ENCFF310FEN.tar tar (differential splicing quantifications) 4.2 MB
ENCFF323YMS.bigWig bigWig (minus strand signal of all reads) 106.8 MB
ENCFF332ZOH.bigWig bigWig (plus strand signal of unique reads) 103.3 MB
ENCFF367RLX.fastq fastq (reads) 3.3 GB
ENCFF384NCT.tsv tsv (transcript quantifications) 25.3 MB
ENCFF385JTX.bam bam (alignments) 5.3 GB
ENCFF388IYB.bigWig bigWig (minus strand signal of all reads) 105.3 MB
ENCFF391VHX.bigWig bigWig (plus strand signal of all reads) 104.0 MB
ENCFF408MBX.tsv tsv (transcript quantifications) 25.3 MB
ENCFF421EJK.bigWig bigWig (plus strand signal of unique reads) 108.8 MB
ENCFF426VUQ.fastq fastq (reads) 3.5 GB
ENCFF432ZRH.fastq fastq (reads) 3.7 GB
ENCFF435HKE.bigWig bigWig (plus strand signal of all reads) 117.4 MB
ENCFF437XDD.bigWig bigWig (minus strand signal of all reads) 102.0 MB
ENCFF444MCT.bigWig bigWig (plus strand signal of unique reads) 95.8 MB
ENCFF444QTD.bam bam (transcriptome alignments) 7.0 GB
ENCFF468CVP.bigWig bigWig (minus strand signal of all reads) 121.5 MB
ENCFF474LMY.bigWig bigWig (plus strand signal of unique reads) 103.4 MB
ENCFF481OUO.bigWig bigWig (plus strand signal of all reads) 106.9 MB
ENCFF482EOJ.bigWig bigWig (plus strand signal of all reads) 123.3 MB
ENCFF490EIE.bigWig bigWig (minus strand signal of unique reads) 92.9 MB
ENCFF509AZU.bigWig bigWig (plus strand signal of unique reads) 98.4 MB
ENCFF522TER.bam bam (alignments) 6.9 GB
ENCFF528YQX.bam bam (transcriptome alignments) 7.7 GB
ENCFF535EIY.tsv tsv (differential expression quantifications) 2.0 MB
ENCFF597VTE.bigWig bigWig (minus strand signal of unique reads) 96.1 MB
ENCFF604SKA.bigWig bigWig (plus strand signal of unique reads) 91.5 MB
ENCFF606TMN.bigWig bigWig (plus strand signal of all reads) 100.7 MB
ENCFF630GHC.bigWig bigWig (minus strand signal of unique reads) 100.6 MB
ENCFF638RNJ.bigWig bigWig (minus strand signal of all reads) 113.9 MB
ENCFF652VSV.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF655KOQ.bigWig bigWig (plus strand signal of all reads) 117.4 MB
ENCFF683LOR.bigWig bigWig (plus strand signal of all reads) 123.3 MB
ENCFF697EHM.bigWig bigWig (minus strand signal of all reads) 120.3 MB
ENCFF701IWG.tar tar (differential splicing quantifications) 16.9 MB
ENCFF703HQJ.tar tar (differential splicing quantifications) 5.0 MB
ENCFF703TVZ.tsv tsv (gene quantifications) 9.5 MB
ENCFF719UON.bigWig bigWig (minus strand signal of unique reads) 98.0 MB
ENCFF723UAP.bam bam (alignments) 7.2 GB
ENCFF728YEI.bigWig bigWig (minus strand signal of unique reads) 106.0 MB
ENCFF733MBC.bigWig bigWig (minus strand signal of all reads) 121.5 MB
ENCFF735MFS.tsv tsv (gene quantifications) 10.4 MB
ENCFF739JVW.bigWig bigWig (minus strand signal of unique reads) 92.9 MB
ENCFF740KBB.bigWig bigWig (minus strand signal of unique reads) 89.7 MB
ENCFF742QEH.bam bam (alignments) 5.7 GB
ENCFF757WHL.bigWig bigWig (minus strand signal of all reads) 115.7 MB
ENCFF761MWI.tsv tsv (transcript quantifications) 27.5 MB
ENCFF766UJN.tsv tsv (gene quantifications) 9.5 MB
ENCFF784LIL.bigWig bigWig (minus strand signal of all reads) 97.8 MB
ENCFF796MOB.fastq fastq (reads) 3.8 GB
ENCFF796WUV.tsv tsv (differential expression quantifications) 4.4 MB
ENCFF807UQI.bigWig bigWig (plus strand signal of all reads) 122.1 MB
ENCFF814IUH.bigWig bigWig (plus strand signal of all reads) 105.3 MB
ENCFF829BBR.tsv tsv (gene quantifications) 10.4 MB
ENCFF835RLK.bigWig bigWig (plus strand signal of unique reads) 95.6 MB
ENCFF841KRG.bigWig bigWig (plus strand signal of unique reads) 102.7 MB
ENCFF846WBP.bam bam (transcriptome alignments) 7.6 GB
ENCFF847FCG.tsv tsv (transcript quantifications) 29.8 MB
ENCFF852OKD.bigWig bigWig (minus strand signal of all reads) 99.3 MB
ENCFF862ORJ.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF864UKK.tsv tsv (transcript quantifications) 24.9 MB
ENCFF890NOM.bam bam (alignments) 7.2 GB
ENCFF919REJ.bigWig bigWig (plus strand signal of all reads) 99.8 MB
ENCFF938ODP.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF954RDX.bam bam (alignments) 5.2 GB
ENCFF962BLE.tsv tsv (transcript quantifications) 27.5 MB
ENCFF975ZKI.bam bam (transcriptome alignments) 6.9 GB
ENCFF979XEA.bigWig bigWig (minus strand signal of all reads) 115.7 MB
ENCFF996GFD.bigWig bigWig (plus strand signal of unique reads) 109.3 MB
ENCSR336DFS ENCSR · via encode_api

RNA-seq on K562 cells treated with an shRNA knockdown against RBFOX2. (RBFOX2_BGKLV24)

Homo sapiens

92 data files
FileTypeSize
ENCFF010JRV.tsv tsv (transcript quantifications) 24.9 MB
ENCFF021MBV.tsv tsv (transcript quantifications) 25.3 MB
ENCFF028GNA.bigWig bigWig (plus strand signal of all reads) 69.5 MB
ENCFF050TRK.bigWig bigWig (plus strand signal of unique reads) 66.9 MB
ENCFF062ELW.tar tar (differential splicing quantifications) 12.7 MB
ENCFF065KFO.tsv tsv (transcript quantifications) 29.8 MB
ENCFF082GFX.bigWig bigWig (minus strand signal of unique reads) 59.4 MB
ENCFF106TNA.bigWig bigWig (plus strand signal of unique reads) 52.4 MB
ENCFF110PYC.tsv tsv (gene quantifications) 9.1 MB
ENCFF128FXL.tar tar (differential splicing quantifications) 3.2 MB
ENCFF137GJF.bigWig bigWig (minus strand signal of all reads) 56.2 MB
ENCFF145UVJ.bigWig bigWig (minus strand signal of unique reads) 47.9 MB
ENCFF146CHN.bam bam (alignments) 3.5 GB
ENCFF148PKR.bam bam (transcriptome alignments) 4.3 GB
ENCFF158OHA.bigWig bigWig (plus strand signal of unique reads) 55.3 MB
ENCFF184GLW.bigWig bigWig (minus strand signal of all reads) 67.1 MB
ENCFF187PBG.fastq fastq (reads) 2.0 GB
ENCFF190TDE.bam bam (transcriptome alignments) 4.3 GB
ENCFF192YSX.bam bam (transcriptome alignments) 3.4 GB
ENCFF202ASF.tsv tsv (transcript quantifications) 27.3 MB
ENCFF206TXH.tsv tsv (gene quantifications) 9.1 MB
ENCFF207KCS.bigWig bigWig (minus strand signal of unique reads) 54.1 MB
ENCFF222GNY.bigWig bigWig (minus strand signal of unique reads) 51.3 MB
ENCFF229EFR.bigWig bigWig (plus strand signal of all reads) 53.6 MB
ENCFF230DCA.bigWig bigWig (minus strand signal of all reads) 52.6 MB
ENCFF231UCO.tsv tsv (gene quantifications) 10.4 MB
ENCFF236DKL.bigWig bigWig (minus strand signal of all reads) 60.4 MB
ENCFF247XFR.bigWig bigWig (plus strand signal of all reads) 73.8 MB
ENCFF257WFI.bigWig bigWig (plus strand signal of unique reads) 55.6 MB
ENCFF274CFF.bigWig bigWig (plus strand signal of unique reads) 63.5 MB
ENCFF295UBK.fastq fastq (reads) 1.7 GB
ENCFF298ZPG.bigWig bigWig (minus strand signal of all reads) 61.3 MB
ENCFF321NTN.bigWig bigWig (plus strand signal of all reads) 55.9 MB
ENCFF332OAE.bigWig bigWig (plus strand signal of all reads) 61.1 MB
ENCFF342JGA.bigWig bigWig (plus strand signal of unique reads) 55.5 MB
ENCFF393UVA.bam bam (alignments) 2.4 GB
ENCFF393YWY.tar tar (differential splicing quantifications) 2.9 MB
ENCFF406TDK.bigWig bigWig (plus strand signal of all reads) 75.8 MB
ENCFF411PYE.bigWig bigWig (plus strand signal of all reads) 57.2 MB
ENCFF416LTY.tsv tsv (differential expression quantifications) 5.5 MB
ENCFF419VQD.bigWig bigWig (minus strand signal of unique reads) 62.2 MB
ENCFF432VAC.bam bam (alignments) 2.4 GB
ENCFF451GMJ.bigWig bigWig (minus strand signal of unique reads) 54.1 MB
ENCFF455ZZD.bigWig bigWig (minus strand signal of all reads) 61.3 MB
ENCFF470IAJ.bigWig bigWig (plus strand signal of unique reads) 52.4 MB
ENCFF479FDF.tsv tsv (gene quantifications) 10.4 MB
ENCFF485CIO.bigWig bigWig (plus strand signal of all reads) 68.0 MB
ENCFF491MDG.bigWig bigWig (plus strand signal of unique reads) 49.3 MB
ENCFF492WYV.bigWig bigWig (minus strand signal of unique reads) 65.4 MB
ENCFF508DTV.bigWig bigWig (plus strand signal of unique reads) 61.0 MB
ENCFF512QCH.bigWig bigWig (minus strand signal of all reads) 74.8 MB
ENCFF512TBA.bigWig bigWig (minus strand signal of all reads) 74.8 MB
ENCFF542JKK.bigWig bigWig (plus strand signal of unique reads) 67.6 MB
ENCFF543QQV.tsv tsv (differential expression quantifications) 2.7 MB
ENCFF543SLA.tsv tsv (gene quantifications) 9.4 MB
ENCFF552DUT.tsv tsv (transcript quantifications) 29.8 MB
ENCFF560RLI.bigWig bigWig (minus strand signal of unique reads) 54.3 MB
ENCFF563OKJ.bigWig bigWig (plus strand signal of unique reads) 64.4 MB
ENCFF566FDB.bigWig bigWig (plus strand signal of all reads) 62.0 MB
ENCFF567KUB.bigWig bigWig (plus strand signal of all reads) 65.3 MB
ENCFF581FAG.bam bam (alignments) 2.9 GB
ENCFF588WPC.fastq fastq (reads) 1.9 GB
ENCFF610IYL.bam bam (alignments) 2.9 GB
ENCFF612SNQ.bigWig bigWig (minus strand signal of all reads) 72.8 MB
ENCFF623RNJ.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF630MXC.tsv tsv (differential expression quantifications) 1.8 MB
ENCFF669OBX.bam bam (alignments) 3.0 GB
ENCFF670LRD.bam bam (alignments) 3.6 GB
ENCFF686TCV.bam bam (transcriptome alignments) 4.8 GB
ENCFF702GQW.bam bam (alignments) 2.5 GB
ENCFF737COT.tsv tsv (transcript quantifications) 24.9 MB
ENCFF751HVW.bam bam (transcriptome alignments) 3.4 GB
ENCFF762GIC.bam bam (alignments) 3.0 GB
ENCFF774OTR.bigWig bigWig (plus strand signal of all reads) 75.8 MB
ENCFF775NXC.bigWig bigWig (minus strand signal of all reads) 64.1 MB
ENCFF797KFX.bam bam (alignments) 3.6 GB
ENCFF813EEE.tsv tsv (gene quantifications) 9.4 MB
ENCFF813UEV.bam bam (transcriptome alignments) 3.9 GB
ENCFF822QBI.bigWig bigWig (minus strand signal of all reads) 55.3 MB
ENCFF822TCD.bigWig bigWig (plus strand signal of all reads) 62.0 MB
ENCFF838FML.bigWig bigWig (plus strand signal of unique reads) 66.9 MB
ENCFF898ZVE.bam bam (alignments) 3.0 GB
ENCFF900QVJ.bigWig bigWig (minus strand signal of unique reads) 62.8 MB
ENCFF905BBS.bigWig bigWig (minus strand signal of unique reads) 51.1 MB
ENCFF920LNP.bam bam (alignments) 2.9 GB
ENCFF937DFJ.bigWig bigWig (minus strand signal of all reads) 68.3 MB
ENCFF938LSS.bigWig bigWig (minus strand signal of unique reads) 66.0 MB
ENCFF949ICL.tsv tsv (transcript quantifications) 27.2 MB
ENCFF958ODW.tsv tsv (differential expression quantifications) 4.1 MB
ENCFF962IFC.tsv tsv (transcript quantifications) 25.3 MB
ENCFF977IBG.fastq fastq (reads) 1.5 GB
ENCFF992MSB.bigWig bigWig (minus strand signal of unique reads) 65.2 MB
ENCSR165VBD ENCSR · via encode_api

RNA-seq on K562 cells treated with an shRNA knockdown against UTP18. (UTP18_BGKLV32)

Homo sapiens

92 data files
FileTypeSize
ENCFF006OPF.bigWig bigWig (minus strand signal of all reads) 118.2 MB
ENCFF023RDY.bigWig bigWig (plus strand signal of unique reads) 96.6 MB
ENCFF030SKP.bigWig bigWig (plus strand signal of unique reads) 100.2 MB
ENCFF046QAW.tar tar (differential splicing quantifications) 4.3 MB
ENCFF048WFR.bam bam (alignments) 6.4 GB
ENCFF054NTN.bam bam (alignments) 5.1 GB
ENCFF059VDA.bam bam (alignments) 6.6 GB
ENCFF069EHP.tsv tsv (gene quantifications) 9.1 MB
ENCFF082IWI.tsv tsv (transcript quantifications) 25.3 MB
ENCFF094CIL.bigWig bigWig (plus strand signal of unique reads) 104.7 MB
ENCFF124FBJ.tsv tsv (differential expression quantifications) 2.0 MB
ENCFF136TFZ.bigWig bigWig (plus strand signal of unique reads) 108.7 MB
ENCFF191GKG.bam bam (alignments) 6.3 GB
ENCFF201MKJ.bam bam (alignments) 5.3 GB
ENCFF213FBO.bigWig bigWig (minus strand signal of unique reads) 101.5 MB
ENCFF217XWZ.bigWig bigWig (minus strand signal of unique reads) 97.2 MB
ENCFF233PWX.tsv tsv (transcript quantifications) 29.9 MB
ENCFF242TCS.bam bam (transcriptome alignments) 7.5 GB
ENCFF249PZM.tsv tsv (gene quantifications) 9.5 MB
ENCFF251YTE.bigWig bigWig (minus strand signal of unique reads) 96.0 MB
ENCFF252ESU.bigWig bigWig (plus strand signal of all reads) 106.6 MB
ENCFF263GMH.bigWig bigWig (plus strand signal of unique reads) 108.8 MB
ENCFF275TFJ.bigWig bigWig (minus strand signal of all reads) 99.0 MB
ENCFF279NUI.fastq fastq (reads) 3.5 GB
ENCFF285CNY.bigWig bigWig (plus strand signal of all reads) 106.6 MB
ENCFF299FOY.bam bam (alignments) 5.1 GB
ENCFF306PSQ.tsv tsv (gene quantifications) 9.5 MB
ENCFF316KAP.tsv tsv (transcript quantifications) 29.8 MB
ENCFF330OMB.bigWig bigWig (plus strand signal of all reads) 109.1 MB
ENCFF332YEP.bigWig bigWig (minus strand signal of all reads) 102.2 MB
ENCFF351CTI.tar tar (differential splicing quantifications) 16.8 MB
ENCFF362PUD.tsv tsv (transcript quantifications) 24.9 MB
ENCFF383LDU.bigWig bigWig (plus strand signal of all reads) 104.1 MB
ENCFF418MPC.bigWig bigWig (plus strand signal of unique reads) 104.6 MB
ENCFF419KUY.tsv tsv (transcript quantifications) 25.3 MB
ENCFF420BMY.bigWig bigWig (minus strand signal of unique reads) 94.1 MB
ENCFF430GML.bam bam (alignments) 5.2 GB
ENCFF433MAS.bam bam (alignments) 6.6 GB
ENCFF448GWX.bam bam (transcriptome alignments) 7.7 GB
ENCFF455LAT.fastq fastq (reads) 3.4 GB
ENCFF471YBH.bigWig bigWig (plus strand signal of all reads) 117.7 MB
ENCFF508BJZ.bigWig bigWig (minus strand signal of unique reads) 98.5 MB
ENCFF509NTG.bigWig bigWig (minus strand signal of all reads) 115.6 MB
ENCFF509WRJ.bigWig bigWig (minus strand signal of unique reads) 94.4 MB
ENCFF526CAT.bam bam (transcriptome alignments) 8.5 GB
ENCFF533GCA.bigWig bigWig (minus strand signal of all reads) 106.1 MB
ENCFF535PYA.bigWig bigWig (minus strand signal of all reads) 102.3 MB
ENCFF540ZOU.bigWig bigWig (plus strand signal of all reads) 117.7 MB
ENCFF545ZFN.bam bam (transcriptome alignments) 7.5 GB
ENCFF557BLB.bigWig bigWig (minus strand signal of unique reads) 105.4 MB
ENCFF565DLY.fastq fastq (reads) 3.4 GB
ENCFF568FME.bigWig bigWig (minus strand signal of unique reads) 105.2 MB
ENCFF571BIQ.tar tar (differential splicing quantifications) 5.9 MB
ENCFF580CTT.bigWig bigWig (plus strand signal of unique reads) 99.0 MB
ENCFF595BWN.fastq fastq (reads) 3.5 GB
ENCFF596BOP.tsv tsv (gene quantifications) 9.1 MB
ENCFF602HUF.bigWig bigWig (plus strand signal of unique reads) 98.1 MB
ENCFF609RPE.bam bam (alignments) 6.2 GB
ENCFF632QVT.bigWig bigWig (minus strand signal of unique reads) 101.3 MB
ENCFF640DTV.bam bam (alignments) 5.2 GB
ENCFF651BBE.tsv tsv (gene quantifications) 10.4 MB
ENCFF675GYJ.bigWig bigWig (plus strand signal of all reads) 116.1 MB
ENCFF688IAB.bigWig bigWig (plus strand signal of unique reads) 108.6 MB
ENCFF691BLG.bigWig bigWig (minus strand signal of unique reads) 91.1 MB
ENCFF697QRI.tsv tsv (gene quantifications) 10.4 MB
ENCFF723ZJK.bigWig bigWig (minus strand signal of unique reads) 105.1 MB
ENCFF724KUS.tsv tsv (transcript quantifications) 27.4 MB
ENCFF724TJD.tsv tsv (transcript quantifications) 27.5 MB
ENCFF734AHK.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF737KYM.bam bam (alignments) 5.2 GB
ENCFF742QWO.bigWig bigWig (plus strand signal of all reads) 120.8 MB
ENCFF755OCK.tsv tsv (differential expression quantifications) 4.4 MB
ENCFF760MZM.bigWig bigWig (minus strand signal of all reads) 104.2 MB
ENCFF766OFX.bigWig bigWig (plus strand signal of unique reads) 104.0 MB
ENCFF767MHY.bigWig bigWig (plus strand signal of unique reads) 102.0 MB
ENCFF781RAJ.bigWig bigWig (plus strand signal of all reads) 119.4 MB
ENCFF787UCB.bigWig bigWig (minus strand signal of all reads) 113.9 MB
ENCFF814YTR.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF839MXV.bigWig bigWig (minus strand signal of all reads) 115.6 MB
ENCFF840EMW.bigWig bigWig (plus strand signal of unique reads) 94.2 MB
ENCFF855HPO.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF860TRS.bigWig bigWig (plus strand signal of all reads) 120.8 MB
ENCFF864NOS.bigWig bigWig (minus strand signal of all reads) 118.2 MB
ENCFF876BKV.bigWig bigWig (minus strand signal of all reads) 104.1 MB
ENCFF884FJC.bam bam (transcriptome alignments) 6.8 GB
ENCFF924OTS.bam bam (alignments) 6.4 GB
ENCFF925IDA.bam bam (transcriptome alignments) 6.7 GB
ENCFF944EFN.bigWig bigWig (minus strand signal of unique reads) 101.9 MB
ENCFF959MJH.bigWig bigWig (plus strand signal of all reads) 101.5 MB
ENCFF964OFX.tsv tsv (transcript quantifications) 24.9 MB
ENCFF976KTY.bigWig bigWig (minus strand signal of all reads) 116.7 MB
ENCFF993JHR.bigWig bigWig (plus strand signal of all reads) 105.5 MB
ENCSR334BTA ENCSR · via encode_api

RNA-seq on K562 cells treated with an shRNA knockdown against WDR3. (WDR3_BGKLV34)

Homo sapiens

92 data files
FileTypeSize
ENCFF013ZFL.tsv tsv (gene quantifications) 9.1 MB
ENCFF015TBK.bigWig bigWig (plus strand signal of all reads) 97.3 MB
ENCFF036TJP.fastq fastq (reads) 3.0 GB
ENCFF047DOU.bigWig bigWig (minus strand signal of all reads) 90.8 MB
ENCFF065QMQ.bigWig bigWig (minus strand signal of all reads) 90.3 MB
ENCFF069DBL.bam bam (alignments) 5.6 GB
ENCFF080MCM.bigWig bigWig (plus strand signal of unique reads) 89.4 MB
ENCFF081LSA.bigWig bigWig (plus strand signal of unique reads) 85.8 MB
ENCFF098ZQT.bam bam (transcriptome alignments) 6.9 GB
ENCFF128THE.bigWig bigWig (plus strand signal of unique reads) 84.6 MB
ENCFF130BIS.tsv tsv (gene quantifications) 9.1 MB
ENCFF130YXQ.bigWig bigWig (plus strand signal of unique reads) 95.8 MB
ENCFF133ZQM.bigWig bigWig (minus strand signal of all reads) 106.3 MB
ENCFF138AYQ.tsv tsv (gene quantifications) 9.5 MB
ENCFF146OUN.tsv tsv (transcript quantifications) 27.4 MB
ENCFF164NEK.tsv tsv (differential expression quantifications) 5.5 MB
ENCFF164WEQ.bam bam (transcriptome alignments) 6.1 GB
ENCFF166SVX.bigWig bigWig (minus strand signal of unique reads) 86.1 MB
ENCFF177JQM.tsv tsv (gene quantifications) 10.4 MB
ENCFF180OUW.bigWig bigWig (minus strand signal of all reads) 107.9 MB
ENCFF196VSU.fastq fastq (reads) 3.0 GB
ENCFF250RJC.bam bam (transcriptome alignments) 5.9 GB
ENCFF251JLT.tsv tsv (transcript quantifications) 24.9 MB
ENCFF253DBS.bigWig bigWig (plus strand signal of all reads) 92.5 MB
ENCFF270WDW.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF272CIE.tsv tsv (gene quantifications) 10.4 MB
ENCFF273MBQ.bam bam (transcriptome alignments) 6.1 GB
ENCFF278YZI.tar tar (differential splicing quantifications) 16.4 MB
ENCFF279LXS.bigWig bigWig (minus strand signal of all reads) 107.9 MB
ENCFF295YWH.bam bam (alignments) 4.4 GB
ENCFF300YGD.bigWig bigWig (plus strand signal of unique reads) 95.8 MB
ENCFF312ETY.bigWig bigWig (minus strand signal of unique reads) 93.3 MB
ENCFF327MYT.bigWig bigWig (plus strand signal of all reads) 109.6 MB
ENCFF333UXV.bigWig bigWig (minus strand signal of unique reads) 94.5 MB
ENCFF344WJF.bigWig bigWig (minus strand signal of all reads) 106.3 MB
ENCFF354DXB.bigWig bigWig (plus strand signal of all reads) 108.0 MB
ENCFF359MKN.fastq fastq (reads) 2.9 GB
ENCFF370FGT.tar tar (differential splicing quantifications) 3.9 MB
ENCFF381BGH.tsv tsv (gene quantifications) 9.5 MB
ENCFF389BLB.bam bam (alignments) 4.5 GB
ENCFF392VHZ.bigWig bigWig (plus strand signal of unique reads) 88.3 MB
ENCFF406SDT.bigWig bigWig (plus strand signal of unique reads) 96.0 MB
ENCFF414SBW.bigWig bigWig (plus strand signal of unique reads) 96.3 MB
ENCFF427FYZ.bam bam (alignments) 5.6 GB
ENCFF436KNL.bigWig bigWig (minus strand signal of all reads) 94.0 MB
ENCFF448CSN.tsv tsv (transcript quantifications) 24.9 MB
ENCFF450FFU.bam bam (alignments) 5.4 GB
ENCFF462BTI.bigWig bigWig (minus strand signal of unique reads) 87.2 MB
ENCFF491NFH.bam bam (transcriptome alignments) 6.7 GB
ENCFF493XES.bigWig bigWig (minus strand signal of unique reads) 93.7 MB
ENCFF515WVK.bigWig bigWig (minus strand signal of unique reads) 93.8 MB
ENCFF519WYA.tsv tsv (differential expression quantifications) 2.0 MB
ENCFF540NRS.bigWig bigWig (minus strand signal of unique reads) 85.4 MB
ENCFF556MTO.bigWig bigWig (minus strand signal of unique reads) 92.8 MB
ENCFF572TGX.tsv tsv (transcript quantifications) 27.4 MB
ENCFF574APB.bigWig bigWig (plus strand signal of all reads) 107.5 MB
ENCFF589DBC.bam bam (alignments) 4.5 GB
ENCFF590KJK.bigWig bigWig (plus strand signal of all reads) 93.7 MB
ENCFF614PWF.bigWig bigWig (plus strand signal of all reads) 109.6 MB
ENCFF639BUL.bigWig bigWig (plus strand signal of all reads) 106.2 MB
ENCFF645ICB.bigWig bigWig (minus strand signal of all reads) 92.7 MB
ENCFF648SLE.tsv tsv (transcript quantifications) 25.3 MB
ENCFF650BJI.bigWig bigWig (minus strand signal of all reads) 96.0 MB
ENCFF654QZH.bigWig bigWig (plus strand signal of all reads) 92.4 MB
ENCFF668TYJ.bam bam (alignments) 5.3 GB
ENCFF715EAX.bam bam (alignments) 4.6 GB
ENCFF723GSV.bam bam (transcriptome alignments) 5.9 GB
ENCFF726HHB.tar tar (differential splicing quantifications) 4.7 MB
ENCFF733JPO.bigWig bigWig (minus strand signal of unique reads) 82.3 MB
ENCFF778LGR.bigWig bigWig (minus strand signal of all reads) 106.2 MB
ENCFF781LWV.bigWig bigWig (minus strand signal of all reads) 95.6 MB
ENCFF782FMI.tsv tsv (differential expression quantifications) 4.4 MB
ENCFF783EXD.bigWig bigWig (plus strand signal of unique reads) 97.0 MB
ENCFF788IDC.tsv tsv (transcript quantifications) 25.3 MB
ENCFF792ARI.bam bam (alignments) 4.4 GB
ENCFF792URI.bam bam (alignments) 4.5 GB
ENCFF797NAM.bigWig bigWig (plus strand signal of unique reads) 95.1 MB
ENCFF802DZB.bigWig bigWig (plus strand signal of all reads) 95.4 MB
ENCFF831ENM.bigWig bigWig (minus strand signal of unique reads) 83.1 MB
ENCFF841WPL.bigWig bigWig (minus strand signal of unique reads) 86.6 MB
ENCFF851ZRI.bigWig bigWig (minus strand signal of unique reads) 93.7 MB
ENCFF868AFI.bigWig bigWig (plus strand signal of unique reads) 88.3 MB
ENCFF901UWI.tsv tsv (transcript quantifications) 29.8 MB
ENCFF904QMH.bam bam (alignments) 5.5 GB
ENCFF932XNN.bigWig bigWig (plus strand signal of all reads) 107.5 MB
ENCFF936MDY.fastq fastq (reads) 2.8 GB
ENCFF937XJX.bigWig bigWig (plus strand signal of all reads) 98.0 MB
ENCFF950VMN.bigWig bigWig (minus strand signal of all reads) 105.0 MB
ENCFF968EIL.tsv tsv (transcript quantifications) 29.8 MB
ENCFF970LKG.bam bam (alignments) 5.5 GB
ENCFF974WEU.bigWig bigWig (plus strand signal of unique reads) 87.9 MB
ENCFF991MXY.tsv tsv (differential expression quantifications) 2.9 MB
ENCSR667RIA ENCSR · via encode_api

shRNA knockdown against RPS2 in HepG2 cells followed by RNA-seq. (RPS2_BGHLV18)

Homo sapiens

92 data files
FileTypeSize
ENCFF004DMN.bigWig bigWig (minus strand signal of all reads) 92.2 MB
ENCFF008BTV.tsv tsv (gene quantifications) 9.1 MB
ENCFF026OND.tsv tsv (transcript quantifications) 25.3 MB
ENCFF034UQY.bam bam (alignments) 5.4 GB
ENCFF041SNX.bigWig bigWig (minus strand signal of all reads) 81.3 MB
ENCFF051NQC.tar tar (differential splicing quantifications) 15.4 MB
ENCFF066WRI.fastq fastq (reads) 2.4 GB
ENCFF075JHH.bam bam (transcriptome alignments) 6.1 GB
ENCFF091XCE.bigWig bigWig (plus strand signal of all reads) 81.5 MB
ENCFF108BIO.bam bam (alignments) 4.4 GB
ENCFF135JXG.bigWig bigWig (minus strand signal of all reads) 89.6 MB
ENCFF149NFA.bam bam (alignments) 4.4 GB
ENCFF157HVI.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF159STR.tsv tsv (transcript quantifications) 27.3 MB
ENCFF236VIV.bigWig bigWig (minus strand signal of unique reads) 80.5 MB
ENCFF238AHB.bigWig bigWig (minus strand signal of all reads) 81.6 MB
ENCFF239MDK.tsv tsv (gene quantifications) 10.4 MB
ENCFF242VQJ.bam bam (alignments) 5.4 GB
ENCFF248HMP.bigWig bigWig (minus strand signal of unique reads) 82.8 MB
ENCFF259TDR.bam bam (alignments) 4.7 GB
ENCFF312KAD.bigWig bigWig (minus strand signal of all reads) 88.9 MB
ENCFF344YEO.tar tar (differential splicing quantifications) 4.0 MB
ENCFF358TGQ.bam bam (alignments) 4.0 GB
ENCFF365HUO.bigWig bigWig (minus strand signal of unique reads) 82.9 MB
ENCFF375GIW.bigWig bigWig (plus strand signal of all reads) 83.1 MB
ENCFF388VRD.bigWig bigWig (minus strand signal of all reads) 92.2 MB
ENCFF416LJX.bigWig bigWig (minus strand signal of unique reads) 75.3 MB
ENCFF417UTL.tsv tsv (transcript quantifications) 25.3 MB
ENCFF427FWX.bigWig bigWig (plus strand signal of unique reads) 80.0 MB
ENCFF430WZO.bigWig bigWig (plus strand signal of all reads) 91.3 MB
ENCFF445DZJ.bigWig bigWig (minus strand signal of all reads) 89.7 MB
ENCFF448YXI.bigWig bigWig (plus strand signal of all reads) 93.7 MB
ENCFF453WVK.bigWig bigWig (minus strand signal of unique reads) 79.5 MB
ENCFF463XGE.bigWig bigWig (minus strand signal of unique reads) 79.9 MB
ENCFF473ORO.bigWig bigWig (plus strand signal of all reads) 83.3 MB
ENCFF478ACB.bam bam (alignments) 3.9 GB
ENCFF484ZAV.bigWig bigWig (plus strand signal of unique reads) 75.1 MB
ENCFF486NMZ.bam bam (transcriptome alignments) 5.8 GB
ENCFF491YVE.bigWig bigWig (minus strand signal of unique reads) 78.8 MB
ENCFF504CVT.bigWig bigWig (plus strand signal of unique reads) 77.9 MB
ENCFF509FVG.tsv tsv (transcript quantifications) 29.8 MB
ENCFF553ZGN.tsv tsv (transcript quantifications) 29.8 MB
ENCFF559DGB.tsv tsv (gene quantifications) 9.4 MB
ENCFF576BRC.tsv tsv (gene quantifications) 9.1 MB
ENCFF576COY.bigWig bigWig (plus strand signal of unique reads) 81.1 MB
ENCFF576WAU.bigWig bigWig (minus strand signal of unique reads) 75.9 MB
ENCFF578KQH.bigWig bigWig (minus strand signal of all reads) 84.1 MB
ENCFF596MWB.fastq fastq (reads) 2.7 GB
ENCFF611WGP.bigWig bigWig (plus strand signal of unique reads) 77.6 MB
ENCFF616IUI.bigWig bigWig (plus strand signal of unique reads) 82.8 MB
ENCFF621WRA.bigWig bigWig (minus strand signal of all reads) 85.3 MB
ENCFF624SRJ.tsv tsv (differential expression quantifications) 4.4 MB
ENCFF634VXL.bigWig bigWig (minus strand signal of all reads) 78.3 MB
ENCFF642HMO.bigWig bigWig (plus strand signal of unique reads) 82.1 MB
ENCFF642SFO.bigWig bigWig (plus strand signal of unique reads) 78.2 MB
ENCFF661TYG.tsv tsv (transcript quantifications) 24.9 MB
ENCFF674WLD.bigWig bigWig (plus strand signal of all reads) 85.7 MB
ENCFF698YLQ.tsv tsv (transcript quantifications) 24.9 MB
ENCFF699WVF.bigWig bigWig (minus strand signal of all reads) 92.2 MB
ENCFF704MVS.bigWig bigWig (plus strand signal of all reads) 80.0 MB
ENCFF706OKU.bigWig bigWig (minus strand signal of unique reads) 77.9 MB
ENCFF709FSN.bigWig bigWig (plus strand signal of unique reads) 85.7 MB
ENCFF728UON.bam bam (transcriptome alignments) 5.4 GB
ENCFF742RPW.fastq fastq (reads) 2.6 GB
ENCFF754IVU.tsv tsv (gene quantifications) 9.4 MB
ENCFF759REL.bigWig bigWig (plus strand signal of all reads) 87.1 MB
ENCFF769ERD.bigWig bigWig (plus strand signal of all reads) 91.3 MB
ENCFF788COO.bigWig bigWig (plus strand signal of all reads) 93.9 MB
ENCFF791MAQ.bam bam (alignments) 4.0 GB
ENCFF793LQC.bigWig bigWig (plus strand signal of all reads) 93.9 MB
ENCFF803SMF.bam bam (alignments) 4.6 GB
ENCFF818BRF.bam bam (alignments) 4.6 GB
ENCFF819KDC.bigWig bigWig (plus strand signal of unique reads) 85.2 MB
ENCFF826SGL.bam bam (transcriptome alignments) 5.4 GB
ENCFF843BCO.bam bam (alignments) 3.8 GB
ENCFF845HDG.bigWig bigWig (plus strand signal of unique reads) 85.1 MB
ENCFF845YRD.tsv tsv (differential expression quantifications) 2.7 MB
ENCFF848FDR.bigWig bigWig (minus strand signal of all reads) 79.9 MB
ENCFF848ONF.bam bam (transcriptome alignments) 6.5 GB
ENCFF849WUL.tsv tsv (differential expression quantifications) 5.5 MB
ENCFF853XXP.fastq fastq (reads) 2.5 GB
ENCFF900GSM.tar tar (differential splicing quantifications) 3.3 MB
ENCFF902FPP.tsv tsv (gene quantifications) 10.4 MB
ENCFF914EMK.bigWig bigWig (minus strand signal of unique reads) 83.4 MB
ENCFF914OCB.bigWig bigWig (minus strand signal of unique reads) 76.0 MB
ENCFF915BFK.tsv tsv (differential expression quantifications) 1.8 MB
ENCFF920DYT.bigWig bigWig (plus strand signal of unique reads) 81.7 MB
ENCFF924KMA.bam bam (transcriptome alignments) 5.8 GB
ENCFF927OFK.bigWig bigWig (minus strand signal of unique reads) 72.8 MB
ENCFF937FPP.tsv tsv (transcript quantifications) 27.4 MB
ENCFF945DBT.bam bam (alignments) 3.8 GB
ENCFF993SIR.bigWig bigWig (plus strand signal of all reads) 90.3 MB
ENCSR778SIU ENCSR · via encode_api

shRNA knockdown against SUPV3L1 in K562 cells followed by RNA-seq. (SUPV3L1_BGKLV19)

Homo sapiens

92 data files
FileTypeSize
ENCFF010MQD.bam bam (alignments) 3.0 GB
ENCFF024TAE.bigWig bigWig (plus strand signal of unique reads) 77.4 MB
ENCFF026TZM.bigWig bigWig (plus strand signal of unique reads) 76.6 MB
ENCFF026ZRE.bigWig bigWig (plus strand signal of all reads) 79.8 MB
ENCFF030IEC.bam bam (transcriptome alignments) 4.1 GB
ENCFF073XDP.bigWig bigWig (plus strand signal of unique reads) 72.5 MB
ENCFF080URN.bam bam (transcriptome alignments) 4.0 GB
ENCFF104IXR.bigWig bigWig (plus strand signal of all reads) 87.4 MB
ENCFF122YUB.bigWig bigWig (minus strand signal of all reads) 77.4 MB
ENCFF131IDC.bigWig bigWig (minus strand signal of unique reads) 76.2 MB
ENCFF135ZYF.bigWig bigWig (minus strand signal of unique reads) 71.1 MB
ENCFF142OEN.bigWig bigWig (minus strand signal of all reads) 73.1 MB
ENCFF146LZR.fastq fastq (reads) 1.9 GB
ENCFF148NFM.bigWig bigWig (minus strand signal of unique reads) 77.1 MB
ENCFF156DLM.bigWig bigWig (plus strand signal of all reads) 87.4 MB
ENCFF178NRT.fastq fastq (reads) 1.9 GB
ENCFF193VAH.bigWig bigWig (plus strand signal of all reads) 86.4 MB
ENCFF204BTF.bigWig bigWig (minus strand signal of all reads) 77.7 MB
ENCFF206NNS.bam bam (alignments) 2.9 GB
ENCFF215ZWP.tsv tsv (transcript quantifications) 25.2 MB
ENCFF218QKV.bigWig bigWig (minus strand signal of all reads) 76.1 MB
ENCFF222GVG.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF225IWS.bam bam (transcriptome alignments) 4.0 GB
ENCFF233YRK.bigWig bigWig (plus strand signal of unique reads) 77.8 MB
ENCFF265COQ.tsv tsv (transcript quantifications) 29.7 MB
ENCFF274YQD.tsv tsv (transcript quantifications) 29.7 MB
ENCFF311FMD.bigWig bigWig (minus strand signal of all reads) 74.5 MB
ENCFF317JJV.bigWig bigWig (minus strand signal of all reads) 86.3 MB
ENCFF324VRM.tsv tsv (differential expression quantifications) 4.3 MB
ENCFF343HFZ.bam bam (alignments) 3.1 GB
ENCFF350KOJ.bigWig bigWig (plus strand signal of all reads) 87.0 MB
ENCFF397OVD.fastq fastq (reads) 1.8 GB
ENCFF407WRS.bigWig bigWig (minus strand signal of unique reads) 71.2 MB
ENCFF410FSV.bigWig bigWig (plus strand signal of unique reads) 67.8 MB
ENCFF413LZH.tsv tsv (transcript quantifications) 24.8 MB
ENCFF417AVO.bam bam (alignments) 3.7 GB
ENCFF440DOC.bigWig bigWig (plus strand signal of all reads) 78.8 MB
ENCFF447DOB.bigWig bigWig (minus strand signal of unique reads) 75.3 MB
ENCFF449WZR.tsv tsv (transcript quantifications) 25.2 MB
ENCFF451PMF.bam bam (alignments) 3.8 GB
ENCFF471WPE.bigWig bigWig (plus strand signal of unique reads) 74.0 MB
ENCFF473TGJ.bigWig bigWig (plus strand signal of all reads) 76.8 MB
ENCFF475JSW.bigWig bigWig (plus strand signal of unique reads) 78.5 MB
ENCFF476QDJ.bigWig bigWig (minus strand signal of all reads) 85.5 MB
ENCFF480MKO.bigWig bigWig (minus strand signal of unique reads) 67.6 MB
ENCFF497GKS.bigWig bigWig (plus strand signal of all reads) 86.4 MB
ENCFF508OZF.bigWig bigWig (minus strand signal of unique reads) 75.1 MB
ENCFF539NRJ.bigWig bigWig (plus strand signal of unique reads) 73.8 MB
ENCFF558JCA.bam bam (transcriptome alignments) 4.7 GB
ENCFF568KKK.bigWig bigWig (plus strand signal of all reads) 74.1 MB
ENCFF582JBQ.bigWig bigWig (minus strand signal of all reads) 86.7 MB
ENCFF590KGX.bam bam (alignments) 2.9 GB
ENCFF590YNO.bigWig bigWig (minus strand signal of all reads) 78.9 MB
ENCFF594BXB.bigWig bigWig (plus strand signal of all reads) 84.4 MB
ENCFF595ARB.bam bam (alignments) 3.8 GB
ENCFF601VIS.bigWig bigWig (minus strand signal of unique reads) 75.9 MB
ENCFF611REF.tar tar (differential splicing quantifications) 4.6 MB
ENCFF619HFR.bigWig bigWig (minus strand signal of unique reads) 66.2 MB
ENCFF620KTQ.bigWig bigWig (minus strand signal of unique reads) 72.7 MB
ENCFF623DHM.tsv tsv (gene quantifications) 9.4 MB
ENCFF654PVK.bam bam (alignments) 3.5 GB
ENCFF663YBK.bigWig bigWig (minus strand signal of all reads) 83.6 MB
ENCFF675FYE.tsv tsv (gene quantifications) 9.1 MB
ENCFF676LGW.tar tar (differential splicing quantifications) 14.3 MB
ENCFF683OOL.tsv tsv (gene quantifications) 10.4 MB
ENCFF697DQQ.tsv tsv (transcript quantifications) 24.8 MB
ENCFF710LUV.bam bam (alignments) 3.6 GB
ENCFF726JZR.bam bam (transcriptome alignments) 4.6 GB
ENCFF729NUH.fastq fastq (reads) 2.0 GB
ENCFF748YCT.bigWig bigWig (plus strand signal of unique reads) 76.0 MB
ENCFF757DSF.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF786ZML.bigWig bigWig (minus strand signal of unique reads) 72.3 MB
ENCFF790MOF.bam bam (transcriptome alignments) 4.1 GB
ENCFF793EJY.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF811EXD.bigWig bigWig (plus strand signal of unique reads) 76.8 MB
ENCFF820DBB.bam bam (alignments) 3.7 GB
ENCFF825QGA.bigWig bigWig (plus strand signal of unique reads) 72.8 MB
ENCFF838CYF.bigWig bigWig (plus strand signal of all reads) 75.5 MB
ENCFF844HEF.tsv tsv (transcript quantifications) 27.4 MB
ENCFF847RVN.tsv tsv (transcript quantifications) 27.4 MB
ENCFF861JWK.tar tar (differential splicing quantifications) 3.9 MB
ENCFF871XKZ.bigWig bigWig (minus strand signal of unique reads) 74.4 MB
ENCFF880MYQ.bigWig bigWig (minus strand signal of all reads) 86.7 MB
ENCFF885EKQ.bigWig bigWig (plus strand signal of all reads) 78.0 MB
ENCFF902TBS.tsv tsv (gene quantifications) 10.4 MB
ENCFF904IIQ.bigWig bigWig (plus strand signal of unique reads) 69.2 MB
ENCFF917NFT.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF919WUE.bigWig bigWig (minus strand signal of all reads) 85.5 MB
ENCFF923JGL.bam bam (alignments) 3.1 GB
ENCFF923LPD.tsv tsv (gene quantifications) 9.1 MB
ENCFF962HTJ.bam bam (alignments) 3.0 GB
ENCFF967UNC.tsv tsv (gene quantifications) 9.4 MB
ENCSR634KBO ENCSR · via encode_api

RNA-seq on K562 cells treated with an shRNA knockdown against HNRNPC. (HNRNPC_BGKLV21)

Homo sapiens

92 data files
FileTypeSize
ENCFF012NRO.bigWig bigWig (minus strand signal of unique reads) 74.8 MB
ENCFF014VLW.bigWig bigWig (minus strand signal of all reads) 92.7 MB
ENCFF037JLR.tsv tsv (transcript quantifications) 24.8 MB
ENCFF057HQE.bigWig bigWig (plus strand signal of unique reads) 79.6 MB
ENCFF059FGR.tsv tsv (differential expression quantifications) 2.7 MB
ENCFF079ZPU.bigWig bigWig (plus strand signal of all reads) 92.0 MB
ENCFF085ADW.bam bam (alignments) 3.4 GB
ENCFF095YAQ.tar tar (differential splicing quantifications) 14.6 MB
ENCFF101ADM.bigWig bigWig (plus strand signal of unique reads) 71.9 MB
ENCFF105XDL.bigWig bigWig (minus strand signal of all reads) 77.2 MB
ENCFF123QZY.tsv tsv (gene quantifications) 9.1 MB
ENCFF130GWD.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF142TKE.bigWig bigWig (minus strand signal of unique reads) 79.3 MB
ENCFF147DGF.tsv tsv (gene quantifications) 9.1 MB
ENCFF171IMA.bigWig bigWig (plus strand signal of unique reads) 82.0 MB
ENCFF175KUW.bigWig bigWig (minus strand signal of all reads) 91.1 MB
ENCFF188NFP.bam bam (transcriptome alignments) 4.1 GB
ENCFF198VOG.tsv tsv (gene quantifications) 9.4 MB
ENCFF201XMY.bam bam (alignments) 3.3 GB
ENCFF240DIF.fastq fastq (reads) 2.2 GB
ENCFF248TFU.bigWig bigWig (plus strand signal of unique reads) 74.4 MB
ENCFF254NDH.bam bam (alignments) 4.0 GB
ENCFF255QOC.bam bam (transcriptome alignments) 4.6 GB
ENCFF264DAK.bigWig bigWig (plus strand signal of unique reads) 70.1 MB
ENCFF270WAA.bigWig bigWig (plus strand signal of all reads) 83.0 MB
ENCFF299MTX.bigWig bigWig (minus strand signal of all reads) 82.1 MB
ENCFF306XXS.bigWig bigWig (minus strand signal of all reads) 76.5 MB
ENCFF312MYV.tar tar (differential splicing quantifications) 4.9 MB
ENCFF316YKT.bam bam (alignments) 3.9 GB
ENCFF318IJG.tsv tsv (transcript quantifications) 27.4 MB
ENCFF318TUO.bigWig bigWig (plus strand signal of all reads) 82.2 MB
ENCFF322USB.bigWig bigWig (minus strand signal of all reads) 81.3 MB
ENCFF371OAV.bigWig bigWig (minus strand signal of unique reads) 80.5 MB
ENCFF426BWA.bigWig bigWig (plus strand signal of unique reads) 75.8 MB
ENCFF426RAI.bigWig bigWig (minus strand signal of unique reads) 73.0 MB
ENCFF447CAY.bigWig bigWig (plus strand signal of unique reads) 80.6 MB
ENCFF452FPB.fastq fastq (reads) 2.1 GB
ENCFF458ZLI.bigWig bigWig (plus strand signal of unique reads) 82.0 MB
ENCFF470DCE.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF475AGQ.bigWig bigWig (minus strand signal of unique reads) 68.7 MB
ENCFF476PZV.bam bam (alignments) 3.9 GB
ENCFF481NZE.bam bam (alignments) 3.9 GB
ENCFF498RJT.tsv tsv (gene quantifications) 10.4 MB
ENCFF515TQP.bam bam (alignments) 3.3 GB
ENCFF518XOP.bigWig bigWig (minus strand signal of unique reads) 78.1 MB
ENCFF523KLQ.fastq fastq (reads) 2.0 GB
ENCFF550GNU.bigWig bigWig (plus strand signal of all reads) 81.3 MB
ENCFF551GEQ.bigWig bigWig (plus strand signal of all reads) 78.1 MB
ENCFF552SIR.bigWig bigWig (minus strand signal of all reads) 91.0 MB
ENCFF559IIS.bigWig bigWig (plus strand signal of all reads) 77.4 MB
ENCFF568YOY.bigWig bigWig (plus strand signal of all reads) 91.7 MB
ENCFF573DSX.bigWig bigWig (minus strand signal of all reads) 80.7 MB
ENCFF582FNW.bigWig bigWig (plus strand signal of unique reads) 81.9 MB
ENCFF591DCY.bam bam (alignments) 3.2 GB
ENCFF592YJJ.tsv tsv (transcript quantifications) 27.4 MB
ENCFF602WTJ.bigWig bigWig (minus strand signal of all reads) 82.0 MB
ENCFF603HZM.bigWig bigWig (plus strand signal of unique reads) 76.8 MB
ENCFF610ZSN.tsv tsv (gene quantifications) 10.4 MB
ENCFF611AZA.bam bam (transcriptome alignments) 4.7 GB
ENCFF614AMY.bam bam (alignments) 3.8 GB
ENCFF642YDH.bigWig bigWig (minus strand signal of unique reads) 80.6 MB
ENCFF662YRZ.tsv tsv (gene quantifications) 9.4 MB
ENCFF672FGY.bam bam (alignments) 4.0 GB
ENCFF688CHF.tar tar (differential splicing quantifications) 4.1 MB
ENCFF688ZFR.bigWig bigWig (plus strand signal of all reads) 91.9 MB
ENCFF691FWZ.bam bam (transcriptome alignments) 4.2 GB
ENCFF693QSJ.bigWig bigWig (minus strand signal of unique reads) 72.6 MB
ENCFF697CJL.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF699SQU.tsv tsv (transcript quantifications) 25.3 MB
ENCFF731VIB.bam bam (transcriptome alignments) 4.2 GB
ENCFF743XBF.fastq fastq (reads) 1.9 GB
ENCFF750ECE.bigWig bigWig (plus strand signal of unique reads) 73.7 MB
ENCFF751YBH.bigWig bigWig (minus strand signal of unique reads) 78.2 MB
ENCFF772XIE.bigWig bigWig (minus strand signal of all reads) 93.1 MB
ENCFF781EOT.tsv tsv (transcript quantifications) 29.8 MB
ENCFF784MLA.bigWig bigWig (plus strand signal of all reads) 93.5 MB
ENCFF796DBC.tsv tsv (transcript quantifications) 24.8 MB
ENCFF809WMP.tsv tsv (transcript quantifications) 29.8 MB
ENCFF822LXF.bigWig bigWig (plus strand signal of unique reads) 79.5 MB
ENCFF826BID.bam bam (alignments) 3.3 GB
ENCFF860VYJ.tsv tsv (transcript quantifications) 25.3 MB
ENCFF877VOB.bam bam (alignments) 3.2 GB
ENCFF886SIV.bigWig bigWig (minus strand signal of all reads) 93.0 MB
ENCFF913RUJ.bigWig bigWig (plus strand signal of all reads) 93.5 MB
ENCFF917XEO.bigWig bigWig (minus strand signal of unique reads) 80.7 MB
ENCFF920DUX.bam bam (transcriptome alignments) 4.1 GB
ENCFF925FFC.bigWig bigWig (plus strand signal of all reads) 92.0 MB
ENCFF932VNU.bigWig bigWig (minus strand signal of all reads) 92.7 MB
ENCFF940TNV.tsv tsv (differential expression quantifications) 4.5 MB
ENCFF966SRI.bigWig bigWig (plus strand signal of all reads) 80.9 MB
ENCFF982LVI.bigWig bigWig (minus strand signal of unique reads) 75.4 MB
ENCFF991KXC.bigWig bigWig (minus strand signal of unique reads) 70.6 MB
ENCSR318HZC ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) pulldown experiment against SF1

13 data files
FileTypeSize
ENCFF045VHV.tsv tsv (enrichment) 10.0 KB
ENCFF268MJA.tsv tsv (library fraction) 1.1 MB
ENCFF310EFE.fastq fastq (reads) 60.1 MB
ENCFF408CLJ.tsv tsv (enrichment) 168.0 KB
ENCFF514OMP.tsv tsv (library fraction) 265.4 KB
ENCFF550BZS.fastq fastq (reads) 632.5 MB
ENCFF574ATK.fastq fastq (reads) 586.9 MB
ENCFF580RLC.tsv tsv (library fraction) 15.2 KB
ENCFF620JEI.fastq fastq (reads) 105.6 MB
ENCFF753JLV.tsv tsv (enrichment) 688.0 KB
ENCFF846RCG.tsv tsv (enrichment) 41.0 KB
ENCFF894RNB.fastq fastq (reads) 620.7 MB
ENCFF990CLK.tsv tsv (library fraction) 64.1 KB
ENCSR893EFU ENCSR · via encode_api

eCLIP experiment on K562 against DDX6

Homo sapiens

36 data files
FileTypeSize
ENCFF021PYN.bigBed bigBed (peaks) 2.2 MB
ENCFF024VZT.fastq fastq (reads) 581.3 MB
ENCFF037HOV.bigBed bigBed (peaks) 1.6 MB
ENCFF061BRI.bigBed bigBed (peaks) 2.5 MB
ENCFF082NYI.bigWig bigWig (plus strand signal of unique reads) 6.2 MB
ENCFF142GNL.bigWig bigWig (plus strand signal of unique reads) 16.8 MB
ENCFF159GZL.bigWig bigWig (minus strand signal of unique reads) 16.1 MB
ENCFF163DCH.fastq fastq (reads) 595.0 MB
ENCFF182NMK.bed bed (peaks) 615.2 KB
ENCFF234TZD.bigWig bigWig (minus strand signal of unique reads) 5.8 MB
ENCFF242MDU.bam bam (alignments) 299.5 MB
ENCFF259KOV.fastq fastq (reads) 668.2 MB
ENCFF278AZV.bigWig bigWig (minus strand signal of unique reads) 15.9 MB
ENCFF312AIG.bigBed bigBed (peaks) 1.5 MB
ENCFF457JWB.bam bam (alignments) 127.2 MB
ENCFF515CUN.bam bam (alignments) 123.9 MB
ENCFF590NER.bigBed bigBed (peaks) 3.5 MB
ENCFF608UGQ.bed bed (peaks) 1.7 MB
ENCFF616LVU.bigBed bigBed (peaks) 710.9 KB
ENCFF625EKI.bigWig bigWig (plus strand signal of unique reads) 6.0 MB
ENCFF626UUD.bed bed (peaks) 923.2 KB
ENCFF641YMG.bed bed (peaks) 773.1 KB
ENCFF662STV.bigWig bigWig (plus strand signal of unique reads) 17.1 MB
ENCFF682QWG.bed bed (peaks) 287.7 KB
ENCFF719LRT.bigBed bigBed (peaks) 548.4 KB
ENCFF747NRM.bed bed (peaks) 909.7 KB
ENCFF766EMG.bam bam (alignments) 305.9 MB
ENCFF812DRA.bed bed (peaks) 241.3 KB
ENCFF846JEW.bed bed (peaks) 45.1 KB
ENCFF869SIH.bigWig bigWig (minus strand signal of unique reads) 5.7 MB
ENCFF904KTV.bed bed (peaks) 44.7 KB
ENCFF906PBB.bed bed (peaks) 1.7 MB
ENCFF915SRQ.fastq fastq (reads) 669.9 MB
ENCFF948ZLM.bigBed bigBed (peaks) 3.5 MB
ENCFF985VOM.bigBed bigBed (peaks) 1.6 MB
ENCFF996GJG.bigBed bigBed (peaks) 1.1 MB
ENCSR708TCY ENCSR · via encode_api

eCLIP control experiment on HepG2 against TAF15

Homo sapiens

8 data files
FileTypeSize
ENCFF021MCC.bigWig bigWig (minus strand signal of unique reads) 23.9 MB
ENCFF062LCG.bam bam (alignments) 533.2 MB
ENCFF612XKJ.fastq fastq (reads) 478.9 MB
ENCFF726CWG.bigWig bigWig (plus strand signal of unique reads) 24.1 MB
ENCFF743PLU.bam bam (alignments) 523.4 MB
ENCFF832HQP.fastq fastq (reads) 544.3 MB
ENCFF877MRP.bigWig bigWig (minus strand signal of unique reads) 23.5 MB
ENCFF901PLK.bigWig bigWig (plus strand signal of unique reads) 24.5 MB
ENCSR445FZX ENCSR · via encode_api

eCLIP control experiment on K562 against PTBP1

Homo sapiens

8 data files
FileTypeSize
ENCFF152FMO.bigWig bigWig (plus strand signal of unique reads) 22.3 MB
ENCFF153ZZO.bigWig bigWig (minus strand signal of unique reads) 21.6 MB
ENCFF207EDD.bigWig bigWig (minus strand signal of unique reads) 22.1 MB
ENCFF665CYG.bigWig bigWig (plus strand signal of unique reads) 22.8 MB
ENCFF791AGL.bam bam (alignments) 517.3 MB
ENCFF905RDN.fastq fastq (reads) 730.1 MB
ENCFF960RXN.fastq fastq (reads) 670.0 MB
ENCFF982TFI.bam bam (alignments) 506.8 MB
ENCSR572AMC ENCSR · via encode_api

shRNA knockdown against RECQL in HepG2 cells followed by RNA-seq. (RECQL-BGHLV12)

Homo sapiens

92 data files
FileTypeSize
ENCFF005KYM.bam bam (alignments) 4.5 GB
ENCFF019ALH.bigWig bigWig (plus strand signal of unique reads) 83.4 MB
ENCFF019YZW.bigWig bigWig (minus strand signal of all reads) 86.1 MB
ENCFF033IBF.bam bam (transcriptome alignments) 6.8 GB
ENCFF047XDG.bigWig bigWig (plus strand signal of unique reads) 87.9 MB
ENCFF047YJE.bam bam (alignments) 5.4 GB
ENCFF081SRU.bigWig bigWig (minus strand signal of unique reads) 85.7 MB
ENCFF091UDK.tsv tsv (transcript quantifications) 29.8 MB
ENCFF102QXK.tsv tsv (transcript quantifications) 24.9 MB
ENCFF137SGL.tsv tsv (transcript quantifications) 25.3 MB
ENCFF172ULX.tsv tsv (transcript quantifications) 24.9 MB
ENCFF179AFE.bigWig bigWig (plus strand signal of all reads) 84.4 MB
ENCFF185NXM.bigWig bigWig (plus strand signal of unique reads) 86.8 MB
ENCFF219XXN.bigWig bigWig (minus strand signal of unique reads) 85.6 MB
ENCFF222JMY.fastq fastq (reads) 2.9 GB
ENCFF228WQN.bigWig bigWig (plus strand signal of unique reads) 79.8 MB
ENCFF236SDP.bigWig bigWig (minus strand signal of unique reads) 85.7 MB
ENCFF247WKL.bigWig bigWig (minus strand signal of all reads) 85.3 MB
ENCFF264YHN.tar tar (differential splicing quantifications) 3.3 MB
ENCFF270HYI.bigWig bigWig (minus strand signal of all reads) 94.7 MB
ENCFF279YYC.bigWig bigWig (minus strand signal of all reads) 93.4 MB
ENCFF302NYC.tsv tsv (gene quantifications) 9.4 MB
ENCFF333ROV.bam bam (alignments) 4.5 GB
ENCFF338MUT.bigWig bigWig (plus strand signal of unique reads) 81.0 MB
ENCFF340EXX.bigWig bigWig (plus strand signal of all reads) 86.8 MB
ENCFF391EIB.bam bam (alignments) 5.4 GB
ENCFF397KTR.bam bam (alignments) 4.5 GB
ENCFF399TJE.bigWig bigWig (plus strand signal of all reads) 94.0 MB
ENCFF410NOQ.bigWig bigWig (plus strand signal of all reads) 94.8 MB
ENCFF418VEU.bigWig bigWig (minus strand signal of unique reads) 81.0 MB
ENCFF430ZUE.bigWig bigWig (minus strand signal of all reads) 93.4 MB
ENCFF446VJF.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF446WQV.bigWig bigWig (minus strand signal of unique reads) 83.5 MB
ENCFF456ASM.bigWig bigWig (minus strand signal of all reads) 93.4 MB
ENCFF456VUO.bigWig bigWig (plus strand signal of unique reads) 87.9 MB
ENCFF472IOG.bam bam (alignments) 4.5 GB
ENCFF481WMG.bigWig bigWig (plus strand signal of unique reads) 85.7 MB
ENCFF485ZZE.fastq fastq (reads) 3.0 GB
ENCFF493MUC.tar tar (differential splicing quantifications) 16.8 MB
ENCFF495QGG.bigWig bigWig (plus strand signal of all reads) 96.2 MB
ENCFF518SOH.tar tar (differential splicing quantifications) 4.0 MB
ENCFF522EFX.bigWig bigWig (minus strand signal of all reads) 82.9 MB
ENCFF529YAT.tsv tsv (differential expression quantifications) 4.4 MB
ENCFF540GHF.bigWig bigWig (minus strand signal of unique reads) 79.8 MB
ENCFF551XHO.tsv tsv (transcript quantifications) 29.8 MB
ENCFF554RCL.tsv tsv (gene quantifications) 9.1 MB
ENCFF558OBF.bigWig bigWig (minus strand signal of unique reads) 84.6 MB
ENCFF561COD.bigWig bigWig (plus strand signal of unique reads) 87.8 MB
ENCFF588JCW.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF609EEV.bam bam (alignments) 5.3 GB
ENCFF616NJV.bam bam (alignments) 5.4 GB
ENCFF637YVH.bigWig bigWig (minus strand signal of all reads) 82.0 MB
ENCFF644IQS.bigWig bigWig (plus strand signal of all reads) 85.9 MB
ENCFF648QIW.tsv tsv (gene quantifications) 10.4 MB
ENCFF662RAC.tsv tsv (gene quantifications) 10.4 MB
ENCFF686LEH.bam bam (transcriptome alignments) 7.6 GB
ENCFF714ZAY.bigWig bigWig (plus strand signal of unique reads) 82.1 MB
ENCFF720AIL.fastq fastq (reads) 3.0 GB
ENCFF725SWN.tsv tsv (gene quantifications) 9.4 MB
ENCFF734LOI.bigWig bigWig (minus strand signal of all reads) 94.6 MB
ENCFF735CBR.bam bam (alignments) 5.4 GB
ENCFF744LXA.bigWig bigWig (plus strand signal of all reads) 88.0 MB
ENCFF767NPV.bigWig bigWig (minus strand signal of all reads) 86.5 MB
ENCFF777UKM.bigWig bigWig (plus strand signal of all reads) 83.7 MB
ENCFF778OIQ.bam bam (transcriptome alignments) 7.6 GB
ENCFF797ESA.tsv tsv (transcript quantifications) 27.4 MB
ENCFF800RWF.bigWig bigWig (plus strand signal of all reads) 95.0 MB
ENCFF801APV.bigWig bigWig (minus strand signal of unique reads) 76.9 MB
ENCFF824PTB.bigWig bigWig (minus strand signal of unique reads) 81.3 MB
ENCFF826TLD.tsv tsv (differential expression quantifications) 1.8 MB
ENCFF827DFR.bigWig bigWig (minus strand signal of unique reads) 77.7 MB
ENCFF835OQL.bigWig bigWig (plus strand signal of all reads) 88.1 MB
ENCFF853ZOV.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF867UWM.bam bam (alignments) 5.3 GB
ENCFF872YGT.bigWig bigWig (plus strand signal of all reads) 96.3 MB
ENCFF875BGX.bigWig bigWig (plus strand signal of unique reads) 82.9 MB
ENCFF882IJI.bigWig bigWig (minus strand signal of all reads) 84.3 MB
ENCFF887EHR.tsv tsv (gene quantifications) 9.1 MB
ENCFF895GZE.bigWig bigWig (plus strand signal of unique reads) 79.0 MB
ENCFF903SDE.bigWig bigWig (minus strand signal of unique reads) 84.6 MB
ENCFF916WVZ.tsv tsv (transcript quantifications) 25.3 MB
ENCFF922RRX.bam bam (alignments) 4.5 GB
ENCFF924RWB.bam bam (transcriptome alignments) 6.7 GB
ENCFF947GQP.bam bam (transcriptome alignments) 6.7 GB
ENCFF954YCL.bam bam (alignments) 4.5 GB
ENCFF955XKT.bigWig bigWig (plus strand signal of unique reads) 86.8 MB
ENCFF961QFD.bam bam (transcriptome alignments) 6.7 GB
ENCFF966EEG.bigWig bigWig (minus strand signal of all reads) 92.6 MB
ENCFF968XOE.fastq fastq (reads) 2.9 GB
ENCFF973XWD.bigWig bigWig (plus strand signal of all reads) 95.0 MB
ENCFF974BQK.bigWig bigWig (minus strand signal of unique reads) 79.0 MB
ENCFF976HQE.tsv tsv (transcript quantifications) 27.3 MB
ENCSR973QSV ENCSR · via encode_api

shRNA knockdown against AATF in K562 cells followed by RNA-seq. (AATF BGKLV13)

Homo sapiens

92 data files
FileTypeSize
ENCFF006MOL.tar tar (differential splicing quantifications) 4.1 MB
ENCFF024MPN.bigWig bigWig (minus strand signal of unique reads) 72.1 MB
ENCFF033VCF.bigWig bigWig (plus strand signal of unique reads) 74.4 MB
ENCFF044LWF.bigWig bigWig (plus strand signal of all reads) 87.6 MB
ENCFF050BVI.bam bam (transcriptome alignments) 5.1 GB
ENCFF053KMJ.bam bam (alignments) 3.6 GB
ENCFF079CWX.tsv tsv (differential expression quantifications) 4.1 MB
ENCFF080XGD.bigWig bigWig (plus strand signal of all reads) 87.5 MB
ENCFF096VAH.tsv tsv (differential expression quantifications) 2.8 MB
ENCFF118JEE.bam bam (transcriptome alignments) 4.9 GB
ENCFF127LYW.bam bam (alignments) 4.2 GB
ENCFF136FTJ.bigWig bigWig (plus strand signal of all reads) 75.3 MB
ENCFF167MBE.bigWig bigWig (plus strand signal of all reads) 87.6 MB
ENCFF172QLH.bigWig bigWig (minus strand signal of all reads) 77.8 MB
ENCFF176KWR.bigWig bigWig (plus strand signal of unique reads) 70.8 MB
ENCFF186WXI.bam bam (alignments) 3.7 GB
ENCFF205BXY.bigWig bigWig (plus strand signal of all reads) 76.8 MB
ENCFF211QOL.tsv tsv (transcript quantifications) 24.9 MB
ENCFF212ZTU.tar tar (differential splicing quantifications) 15.3 MB
ENCFF223KTK.tar tar (differential splicing quantifications) 2.9 MB
ENCFF247IEV.tsv tsv (gene quantifications) 10.4 MB
ENCFF266GID.bigWig bigWig (plus strand signal of all reads) 80.3 MB
ENCFF277ZBR.bigWig bigWig (plus strand signal of unique reads) 77.6 MB
ENCFF281XSX.tsv tsv (gene quantifications) 9.4 MB
ENCFF284FQY.bigWig bigWig (minus strand signal of all reads) 84.4 MB
ENCFF288EUY.bam bam (transcriptome alignments) 5.8 GB
ENCFF289AHQ.bigWig bigWig (minus strand signal of all reads) 86.5 MB
ENCFF292ICE.bigWig bigWig (plus strand signal of all reads) 86.7 MB
ENCFF301YRH.bigWig bigWig (plus strand signal of unique reads) 74.9 MB
ENCFF306DGS.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF346PVH.tsv tsv (transcript quantifications) 24.9 MB
ENCFF364IAD.bigWig bigWig (minus strand signal of all reads) 86.4 MB
ENCFF379HXL.tsv tsv (transcript quantifications) 29.8 MB
ENCFF387YYA.bigWig bigWig (minus strand signal of unique reads) 71.8 MB
ENCFF396NQE.bam bam (transcriptome alignments) 5.2 GB
ENCFF396SBY.tsv tsv (transcript quantifications) 29.8 MB
ENCFF404RRH.fastq fastq (reads) 2.3 GB
ENCFF418HOL.bigWig bigWig (minus strand signal of unique reads) 68.8 MB
ENCFF420ZNQ.tsv tsv (transcript quantifications) 27.3 MB
ENCFF428LJP.bigWig bigWig (plus strand signal of unique reads) 73.7 MB
ENCFF428NXQ.bigWig bigWig (minus strand signal of all reads) 73.9 MB
ENCFF437YII.bam bam (alignments) 3.7 GB
ENCFF451SLX.bigWig bigWig (plus strand signal of unique reads) 78.6 MB
ENCFF453AQP.bigWig bigWig (plus strand signal of unique reads) 73.4 MB
ENCFF458KRT.bam bam (alignments) 4.4 GB
ENCFF472OXR.tsv tsv (gene quantifications) 9.1 MB
ENCFF474GIV.bam bam (alignments) 4.3 GB
ENCFF490SYM.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF492MMG.bam bam (alignments) 4.3 GB
ENCFF507PMA.bam bam (alignments) 4.4 GB
ENCFF509JMI.bam bam (alignments) 3.6 GB
ENCFF516TQT.bigWig bigWig (plus strand signal of unique reads) 78.1 MB
ENCFF529DOF.bigWig bigWig (minus strand signal of all reads) 75.3 MB
ENCFF542VTS.bigWig bigWig (plus strand signal of all reads) 85.5 MB
ENCFF569QEZ.bam bam (alignments) 4.3 GB
ENCFF570VMK.tsv tsv (gene quantifications) 9.4 MB
ENCFF575KTF.tsv tsv (transcript quantifications) 25.3 MB
ENCFF579RDQ.tsv tsv (gene quantifications) 10.4 MB
ENCFF582INL.bigWig bigWig (minus strand signal of unique reads) 76.9 MB
ENCFF586DGB.bigWig bigWig (minus strand signal of unique reads) 75.7 MB
ENCFF593YYV.bigWig bigWig (minus strand signal of all reads) 86.4 MB
ENCFF625UHO.bigWig bigWig (plus strand signal of all reads) 79.0 MB
ENCFF631EJR.bigWig bigWig (plus strand signal of all reads) 87.5 MB
ENCFF636CYF.bigWig bigWig (minus strand signal of all reads) 78.9 MB
ENCFF643XYZ.bigWig bigWig (minus strand signal of all reads) 78.0 MB
ENCFF674JZT.fastq fastq (reads) 2.2 GB
ENCFF682BKB.bigWig bigWig (minus strand signal of unique reads) 76.7 MB
ENCFF698OWQ.bigWig bigWig (plus strand signal of unique reads) 71.3 MB
ENCFF716GZQ.tsv tsv (transcript quantifications) 25.3 MB
ENCFF719IRJ.bigWig bigWig (minus strand signal of unique reads) 73.0 MB
ENCFF767BMQ.bigWig bigWig (plus strand signal of all reads) 78.7 MB
ENCFF771PZG.tsv tsv (transcript quantifications) 27.3 MB
ENCFF787PAQ.bigWig bigWig (minus strand signal of all reads) 78.5 MB
ENCFF796VAZ.bam bam (transcriptome alignments) 5.0 GB
ENCFF822YXL.bigWig bigWig (minus strand signal of all reads) 85.6 MB
ENCFF831HEX.bigWig bigWig (plus strand signal of unique reads) 77.6 MB
ENCFF839EWY.bigWig bigWig (plus strand signal of unique reads) 78.6 MB
ENCFF850LOQ.tsv tsv (gene quantifications) 9.1 MB
ENCFF862KYU.bam bam (alignments) 3.7 GB
ENCFF906TCH.bigWig bigWig (plus strand signal of unique reads) 77.8 MB
ENCFF911KJZ.bigWig bigWig (minus strand signal of unique reads) 75.6 MB
ENCFF913LND.fastq fastq (reads) 2.3 GB
ENCFF916FLF.bam bam (transcriptome alignments) 5.6 GB
ENCFF916VQX.bigWig bigWig (minus strand signal of unique reads) 76.3 MB
ENCFF932OJA.bigWig bigWig (minus strand signal of all reads) 86.5 MB
ENCFF942RFB.fastq fastq (reads) 2.4 GB
ENCFF944OTT.bigWig bigWig (minus strand signal of unique reads) 75.9 MB
ENCFF964GON.bam bam (alignments) 3.6 GB
ENCFF973MRK.bigWig bigWig (plus strand signal of all reads) 80.0 MB
ENCFF975WWR.bigWig bigWig (minus strand signal of unique reads) 72.4 MB
ENCFF979FSY.bigWig bigWig (minus strand signal of unique reads) 69.4 MB
ENCFF984BOY.tsv tsv (differential expression quantifications) 5.4 MB
ENCSR987FTF ENCSR · via encode_api

eCLIP experiment on HepG2 against RBFOX2

Homo sapiens

36 data files
FileTypeSize
ENCFF026CVE.bigBed bigBed (peaks) 2.7 MB
ENCFF030USB.bed bed (peaks) 665.4 KB
ENCFF074HHE.bigWig bigWig (plus strand signal of unique reads) 17.8 MB
ENCFF082QGS.bed bed (peaks) 1.7 MB
ENCFF154BQS.bam bam (alignments) 358.9 MB
ENCFF154DRN.bed bed (peaks) 166.0 KB
ENCFF170YQV.bam bam (alignments) 355.9 MB
ENCFF172GUS.fastq fastq (reads) 313.5 MB
ENCFF177ZTF.bigWig bigWig (minus strand signal of unique reads) 16.5 MB
ENCFF179HQN.bed bed (peaks) 313.3 KB
ENCFF222ARP.bigBed bigBed (peaks) 1.5 MB
ENCFF239CML.bam bam (alignments) 363.8 MB
ENCFF240NTF.bigWig bigWig (plus strand signal of unique reads) 17.7 MB
ENCFF252QKI.bigWig bigWig (minus strand signal of unique reads) 16.6 MB
ENCFF274QRL.bigWig bigWig (plus strand signal of unique reads) 17.6 MB
ENCFF289OFA.fastq fastq (reads) 337.6 MB
ENCFF311VRI.bigBed bigBed (peaks) 3.4 MB
ENCFF359HDC.bigBed bigBed (peaks) 802.0 KB
ENCFF369UWJ.bigBed bigBed (peaks) 581.7 KB
ENCFF390PJW.bed bed (peaks) 1.8 MB
ENCFF429HUD.bigBed bigBed (peaks) 3.3 MB
ENCFF433UTA.bed bed (peaks) 261.4 KB
ENCFF475KXE.bigBed bigBed (peaks) 2.7 MB
ENCFF591SSP.fastq fastq (reads) 314.7 MB
ENCFF639MYI.bed bed (peaks) 1.8 MB
ENCFF639WJL.bigBed bigBed (peaks) 3.4 MB
ENCFF647KDW.fastq fastq (reads) 334.6 MB
ENCFF663MLI.bigBed bigBed (peaks) 1.7 MB
ENCFF664WCU.bed bed (peaks) 1.7 MB
ENCFF668JDG.bigBed bigBed (peaks) 3.3 MB
ENCFF735HJV.bed bed (peaks) 783.5 KB
ENCFF752HWB.bigWig bigWig (minus strand signal of unique reads) 16.6 MB
ENCFF871NYM.bed bed (peaks) 168.9 KB
ENCFF939GCU.bigWig bigWig (minus strand signal of unique reads) 16.7 MB
ENCFF980ZNW.bigWig bigWig (plus strand signal of unique reads) 17.7 MB
ENCFF994WPX.bam bam (alignments) 365.4 MB
ENCSR121NVA ENCSR · via encode_api

eCLIP experiment on HepG2 against PRPF8

Homo sapiens

36 data files
FileTypeSize
ENCFF016DQE.bigWig bigWig (minus strand signal of unique reads) 19.9 MB
ENCFF044RKN.bigWig bigWig (plus strand signal of unique reads) 20.5 MB
ENCFF048YPA.bed bed (peaks) 455.2 KB
ENCFF074MHP.fastq fastq (reads) 423.9 MB
ENCFF084UIB.bigBed bigBed (peaks) 3.1 MB
ENCFF086URZ.bigBed bigBed (peaks) 1.3 MB
ENCFF095PCI.bigWig bigWig (minus strand signal of unique reads) 20.6 MB
ENCFF098XUM.bed bed (peaks) 1.9 MB
ENCFF134AZF.bam bam (alignments) 397.6 MB
ENCFF156PFJ.bed bed (peaks) 1.9 MB
ENCFF159RSW.bigBed bigBed (peaks) 3.9 MB
ENCFF179RMZ.bed bed (peaks) 1.3 MB
ENCFF205BLM.bam bam (alignments) 423.1 MB
ENCFF216EHB.bigBed bigBed (peaks) 5.8 MB
ENCFF244MEN.bam bam (alignments) 427.0 MB
ENCFF319EMF.bigWig bigWig (minus strand signal of unique reads) 19.8 MB
ENCFF322FCO.bigWig bigWig (plus strand signal of unique reads) 21.6 MB
ENCFF377YUF.bed bed (peaks) 688.5 KB
ENCFF419BEO.fastq fastq (reads) 460.0 MB
ENCFF446YMK.bigBed bigBed (peaks) 3.9 MB
ENCFF493OBW.bigWig bigWig (plus strand signal of unique reads) 20.6 MB
ENCFF501MMT.bigBed bigBed (peaks) 4.8 MB
ENCFF507XFA.fastq fastq (reads) 368.5 MB
ENCFF552FSY.bigBed bigBed (peaks) 3.9 MB
ENCFF604SEH.bed bed (peaks) 491.3 KB
ENCFF605KYR.bigBed bigBed (peaks) 1.1 MB
ENCFF646XFI.bed bed (peaks) 2.0 MB
ENCFF652OTN.bigBed bigBed (peaks) 2.6 MB
ENCFF672HFP.bam bam (alignments) 392.7 MB
ENCFF747WFL.bed bed (peaks) 1.4 MB
ENCFF763OWE.bigWig bigWig (plus strand signal of unique reads) 21.5 MB
ENCFF770UHE.fastq fastq (reads) 400.9 MB
ENCFF782SZB.bigWig bigWig (minus strand signal of unique reads) 20.7 MB
ENCFF801PCX.bigBed bigBed (peaks) 3.9 MB
ENCFF865SCT.bed bed (peaks) 460.4 KB
ENCFF923IAU.bed bed (peaks) 2.0 MB
ENCSR844RVX ENCSR · via encode_api

eCLIP experiment on K562 against EFTUD2

Homo sapiens

36 data files
FileTypeSize
ENCFF016JYD.bed bed (peaks) 570.4 KB
ENCFF073SAE.fastq fastq (reads) 364.4 MB
ENCFF086VSV.bigBed bigBed (peaks) 2.4 MB
ENCFF092TPS.bed bed (peaks) 1.5 MB
ENCFF151XSN.bigWig bigWig (plus strand signal of unique reads) 12.0 MB
ENCFF172TCX.bigWig bigWig (plus strand signal of unique reads) 11.3 MB
ENCFF174GUB.bed bed (peaks) 1.2 MB
ENCFF187FER.bam bam (alignments) 194.3 MB
ENCFF190WAS.bed bed (peaks) 118.6 KB
ENCFF238FXW.bigBed bigBed (peaks) 3.0 MB
ENCFF239CMH.bigWig bigWig (minus strand signal of unique reads) 11.6 MB
ENCFF243NGV.bed bed (peaks) 185.5 KB
ENCFF273YUG.fastq fastq (reads) 375.2 MB
ENCFF309MLF.bed bed (peaks) 682.2 KB
ENCFF362WMG.bigBed bigBed (peaks) 518.3 KB
ENCFF378IYP.bigBed bigBed (peaks) 1.1 MB
ENCFF396EFU.bigWig bigWig (minus strand signal of unique reads) 11.5 MB
ENCFF435OQO.bigBed bigBed (peaks) 2.5 MB
ENCFF477VKY.bigBed bigBed (peaks) 3.0 MB
ENCFF484SHF.bigBed bigBed (peaks) 2.0 MB
ENCFF503OBM.bed bed (peaks) 220.2 KB
ENCFF646HVY.bigBed bigBed (peaks) 457.1 KB
ENCFF652IOV.bam bam (alignments) 198.9 MB
ENCFF688KVW.fastq fastq (reads) 530.8 MB
ENCFF689YIJ.bed bed (peaks) 1.2 MB
ENCFF691BHS.bed bed (peaks) 1.5 MB
ENCFF701RMR.fastq fastq (reads) 519.4 MB
ENCFF703QKL.bam bam (alignments) 214.8 MB
ENCFF737JZP.bam bam (alignments) 219.2 MB
ENCFF813UWE.bigBed bigBed (peaks) 2.5 MB
ENCFF862ZPV.bed bed (peaks) 117.9 KB
ENCFF909OID.bigWig bigWig (minus strand signal of unique reads) 10.8 MB
ENCFF931LHZ.bigWig bigWig (plus strand signal of unique reads) 12.1 MB
ENCFF963HRU.bigBed bigBed (peaks) 1.2 MB
ENCFF987LSY.bigWig bigWig (plus strand signal of unique reads) 11.1 MB
ENCFF993ASY.bigWig bigWig (minus strand signal of unique reads) 10.7 MB
ENCSR329RIP ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) pulldown experiment against MSI1

15 data files
FileTypeSize
ENCFF007RBS.tsv tsv (library fraction) 1.6 MB
ENCFF049COJ.fastq fastq (reads) 489.3 MB
ENCFF110LAR.fastq fastq (reads) 514.4 MB
ENCFF171TZH.tsv tsv (enrichment) 1.3 MB
ENCFF200ERL.tsv tsv (enrichment) 19.3 KB
ENCFF200FEI.fastq fastq (reads) 429.0 MB
ENCFF278ERO.fastq fastq (reads) 504.7 MB
ENCFF488UTB.tsv tsv (library fraction) 24.1 KB
ENCFF506LTL.tsv tsv (enrichment) 78.0 KB
ENCFF518PVS.fastq fastq (reads) 519.4 MB
ENCFF695CIJ.fastq fastq (reads) 546.0 MB
ENCFF701XPF.tsv tsv (enrichment) 316.0 KB
ENCFF922BHB.fastq fastq (reads) 378.6 MB
ENCFF933GJV.tsv tsv (library fraction) 406.4 KB
ENCFF996BLZ.tsv tsv (library fraction) 99.5 KB
ENCSR314UMJ ENCSR · via encode_api

eCLIP experiment on HepG2 against TRA2A

Homo sapiens

36 data files
FileTypeSize
ENCFF028DNT.bigBed bigBed (peaks) 794.8 KB
ENCFF042FJI.bigWig bigWig (plus strand signal of unique reads) 6.8 MB
ENCFF065AKB.fastq fastq (reads) 96.8 MB
ENCFF105GZJ.bed bed (peaks) 720.0 KB
ENCFF124ZCK.bigWig bigWig (plus strand signal of unique reads) 6.8 MB
ENCFF157EDM.bigBed bigBed (peaks) 798.1 KB
ENCFF210QRC.bed bed (peaks) 717.1 KB
ENCFF228NWX.bigBed bigBed (peaks) 1.3 MB
ENCFF253TTK.fastq fastq (reads) 152.9 MB
ENCFF267TXP.fastq fastq (reads) 147.1 MB
ENCFF271DET.bed bed (peaks) 169.1 KB
ENCFF330ILC.bigWig bigWig (minus strand signal of unique reads) 4.3 MB
ENCFF372BZV.bam bam (alignments) 145.5 MB
ENCFF406QZP.bed bed (peaks) 491.0 KB
ENCFF443POQ.bed bed (peaks) 116.3 KB
ENCFF592LJE.bigWig bigWig (plus strand signal of unique reads) 4.4 MB
ENCFF637SFZ.bigWig bigWig (minus strand signal of unique reads) 4.3 MB
ENCFF693CSS.bam bam (alignments) 146.4 MB
ENCFF741CKV.bigWig bigWig (minus strand signal of unique reads) 6.6 MB
ENCFF744BVM.bigWig bigWig (plus strand signal of unique reads) 4.5 MB
ENCFF745EHU.bam bam (alignments) 81.4 MB
ENCFF760PQD.bed bed (peaks) 293.5 KB
ENCFF766OCH.bed bed (peaks) 21.0 KB
ENCFF783HDV.bigBed bigBed (peaks) 287.6 KB
ENCFF783XOO.bigWig bigWig (minus strand signal of unique reads) 6.7 MB
ENCFF809UGI.bigBed bigBed (peaks) 657.3 KB
ENCFF832CEI.bam bam (alignments) 81.6 MB
ENCFF836WPZ.fastq fastq (reads) 94.1 MB
ENCFF903ULN.bigBed bigBed (peaks) 1.3 MB
ENCFF917NGY.bed bed (peaks) 21.2 KB
ENCFF923NNK.bigBed bigBed (peaks) 364.4 KB
ENCFF937BNI.bigBed bigBed (peaks) 972.6 KB
ENCFF944NHL.bigBed bigBed (peaks) 1.3 MB
ENCFF955HGE.bed bed (peaks) 382.2 KB
ENCFF966KQG.bed bed (peaks) 383.6 KB
ENCFF993FCZ.bigBed bigBed (peaks) 2.0 MB
ENCSR778AJO ENCSR · via encode_api

shRNA knockdown against EIF3G in HepG2 cells followed by RNA-seq. (EIF3G BGHLV14)

Homo sapiens

92 data files
FileTypeSize
ENCFF004UIO.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 75.6 MB
ENCFF007LRS.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 71.3 MB
ENCFF012GXZ.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF021PCS.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF030HIN.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 4.9 GB
ENCFF045RBU.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 69.5 MB
ENCFF072KHY.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.9 GB
ENCFF080RCI.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 71.5 MB
ENCFF092VKU.fastq fastq (reads) 2.3 GB
ENCFF096NZE.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 68.9 MB
ENCFF110VCP.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 72.8 MB
ENCFF154TAP.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 68.2 MB
ENCFF170BIX.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 76.9 MB
ENCFF185NCW.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 5.6 MB
ENCFF202QIZ.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 72.7 MB
ENCFF202WVP.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 66.2 MB
ENCFF226SRH.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 69.5 MB
ENCFF255CPJ.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 72.9 MB
ENCFF285EOV.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 70.2 MB
ENCFF312TXP.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.9 MB
ENCFF313YMH.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 66.1 MB
ENCFF321WFR.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 14.9 MB
ENCFF332PIO.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 4.9 GB
ENCFF341FUU.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF342JZL.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 66.9 MB
ENCFF369CJA.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF377PFY.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 71.4 MB
ENCFF386VHZ.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 74.8 MB
ENCFF391TZH.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 74.4 MB
ENCFF392FLX.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 3.5 MB
ENCFF395CNI.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.9 MB
ENCFF424VTO.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 70.8 MB
ENCFF430WMT.bam bam (alignments); assembly: hg19; genome annotation: V19 3.5 GB
ENCFF433AUN.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 76.6 MB
ENCFF433UFF.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 78.1 MB
ENCFF458TZY.fastq fastq (reads) 2.3 GB
ENCFF462MMC.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 5.3 GB
ENCFF464JCF.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF465BQG.bam bam (alignments); assembly: GRCh38; genome annotation: V29 3.9 GB
ENCFF467UDL.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 80.3 MB
ENCFF475QKP.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 70.2 MB
ENCFF496UGW.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 78.1 MB
ENCFF510HXA.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF512XKQ.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 75.3 MB
ENCFF521EEE.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 74.8 MB
ENCFF522FJH.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 68.3 MB
ENCFF522NJA.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 70.9 MB
ENCFF523FDK.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 73.4 MB
ENCFF537CIH.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 62.4 MB
ENCFF594RJH.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 71.6 MB
ENCFF606ZDA.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 80.7 MB
ENCFF609RRF.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 76.6 MB
ENCFF614QOI.bam bam (alignments); assembly: hg19; genome annotation: V19 3.1 GB
ENCFF643CJU.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 81.8 MB
ENCFF654HOZ.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 5.5 GB
ENCFF665JHX.fastq fastq (reads) 2.1 GB
ENCFF674JRD.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 65.5 MB
ENCFF678NGP.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 6.0 GB
ENCFF703DIJ.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF710XRD.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 4.2 MB
ENCFF727SYG.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.3 MB
ENCFF733JVZ.bam bam (alignments); assembly: GRCh38; genome annotation: V29 4.2 GB
ENCFF749NHR.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 67.3 MB
ENCFF752OGV.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 80.3 MB
ENCFF755MYG.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 68.9 MB
ENCFF755NEN.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.3 MB
ENCFF768BOM.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 79.4 MB
ENCFF786QMM.bam bam (alignments); assembly: hg19; genome annotation: V19 3.1 GB
ENCFF794TBV.bam bam (alignments); assembly: hg19; genome annotation: V19 4.1 GB
ENCFF808FDG.bam bam (alignments); assembly: hg19; genome annotation: V19 3.7 GB
ENCFF821PXA.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF829ZPG.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 76.9 MB
ENCFF837SME.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 70.8 MB
ENCFF863DYW.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 64.3 MB
ENCFF866VSQ.bam bam (alignments); assembly: hg19; genome annotation: V19 3.4 GB
ENCFF867UBG.fastq fastq (reads) 2.1 GB
ENCFF878GLZ.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 3.0 MB
ENCFF887CCL.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 68.2 MB
ENCFF903HSZ.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 74.7 MB
ENCFF904SOT.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF905GCS.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.8 MB
ENCFF911LYF.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF912VTZ.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF919ULA.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 72.4 MB
ENCFF931PXY.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 68.2 MB
ENCFF942VGO.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 81.8 MB
ENCFF964HOS.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 72.3 MB
ENCFF965YNT.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.2 GB
ENCFF966WLP.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 5.3 GB
ENCFF992HXY.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.5 GB
ENCFF992TTP.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.2 GB
ENCFF993TFP.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCSR141OIM ENCSR · via encode_api

eCLIP experiment on HepG2 against DDX6

Homo sapiens

36 data files
FileTypeSize
ENCFF035DLT.bigWig bigWig (plus strand signal of unique reads) 3.5 MB
ENCFF057WYD.fastq fastq (reads) 401.0 MB
ENCFF068WRV.bigBed bigBed (peaks) 1.2 MB
ENCFF102XRX.fastq fastq (reads) 397.6 MB
ENCFF146FNM.bigBed bigBed (peaks) 1.2 MB
ENCFF157GRN.bigWig bigWig (plus strand signal of unique reads) 6.5 MB
ENCFF182AID.bigBed bigBed (peaks) 576.3 KB
ENCFF245JNZ.bigBed bigBed (peaks) 2.3 MB
ENCFF261SMW.bed bed (peaks) 14.1 KB
ENCFF279YNK.bigBed bigBed (peaks) 2.3 MB
ENCFF293PUM.bam bam (alignments) 134.4 MB
ENCFF316XIZ.bigWig bigWig (plus strand signal of unique reads) 3.7 MB
ENCFF372OJA.bigWig bigWig (minus strand signal of unique reads) 3.5 MB
ENCFF398FGK.bam bam (alignments) 58.7 MB
ENCFF438KSN.bed bed (peaks) 970.5 KB
ENCFF472CJU.bed bed (peaks) 598.3 KB
ENCFF486QLT.bigWig bigWig (minus strand signal of unique reads) 3.4 MB
ENCFF513AFK.fastq fastq (reads) 381.6 MB
ENCFF526EOJ.bigBed bigBed (peaks) 1.3 MB
ENCFF566VWD.fastq fastq (reads) 410.8 MB
ENCFF605CZW.bigBed bigBed (peaks) 527.5 KB
ENCFF614NUP.bed bed (peaks) 12.8 KB
ENCFF629EPY.bigBed bigBed (peaks) 1.7 MB
ENCFF650BQD.bed bed (peaks) 720.6 KB
ENCFF661BGG.bigWig bigWig (minus strand signal of unique reads) 6.2 MB
ENCFF666DHB.bigWig bigWig (minus strand signal of unique reads) 6.3 MB
ENCFF680IKQ.bed bed (peaks) 959.5 KB
ENCFF706BZA.bigWig bigWig (plus strand signal of unique reads) 6.4 MB
ENCFF707KQK.bigBed bigBed (peaks) 1.6 MB
ENCFF874OGQ.bigBed bigBed (peaks) 1.3 MB
ENCFF901JSX.bam bam (alignments) 130.8 MB
ENCFF909ZWR.bed bed (peaks) 635.7 KB
ENCFF912RMI.bed bed (peaks) 267.9 KB
ENCFF978MRH.bed bed (peaks) 690.9 KB
ENCFF978UYI.bam bam (alignments) 62.4 MB
ENCFF980KEI.bed bed (peaks) 247.1 KB
ENCSR533HXS ENCSR · via encode_api

shRNA knockdown against EIF2C1 in HepG2 cells followed by RNA-seq. (EIF2C1 BGHLV14)

Homo sapiens

92 data files
FileTypeSize
ENCFF006GWV.bam bam (alignments) 3.4 GB
ENCFF018TKU.bam bam (alignments) 3.9 GB
ENCFF019NJH.bigWig bigWig (plus strand signal of unique reads) 74.1 MB
ENCFF061AAH.bam bam (alignments) 4.4 GB
ENCFF073XTG.tsv tsv (transcript quantifications) 24.9 MB
ENCFF074NKA.fastq fastq (reads) 2.2 GB
ENCFF078LXQ.bam bam (transcriptome alignments) 5.4 GB
ENCFF090YLP.bigWig bigWig (plus strand signal of all reads) 77.4 MB
ENCFF103ICG.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF104AZG.bigWig bigWig (minus strand signal of unique reads) 68.1 MB
ENCFF110VSI.bam bam (alignments) 3.6 GB
ENCFF112AYB.bam bam (transcriptome alignments) 5.5 GB
ENCFF114HMC.bigWig bigWig (minus strand signal of unique reads) 70.4 MB
ENCFF124WSW.bigWig bigWig (minus strand signal of unique reads) 74.9 MB
ENCFF125IUL.bam bam (alignments) 3.3 GB
ENCFF125KKE.bigWig bigWig (minus strand signal of all reads) 71.9 MB
ENCFF150IYU.bigWig bigWig (plus strand signal of unique reads) 69.1 MB
ENCFF170EDY.bam bam (transcriptome alignments) 5.0 GB
ENCFF189FDK.bigWig bigWig (minus strand signal of unique reads) 74.6 MB
ENCFF212NRX.fastq fastq (reads) 2.4 GB
ENCFF227SLN.bigWig bigWig (plus strand signal of all reads) 83.3 MB
ENCFF247RYP.bigWig bigWig (plus strand signal of all reads) 73.2 MB
ENCFF255TTD.bam bam (transcriptome alignments) 6.2 GB
ENCFF263HFF.bigWig bigWig (minus strand signal of all reads) 72.7 MB
ENCFF269ZVZ.bam bam (alignments) 4.4 GB
ENCFF277BCD.bigWig bigWig (plus strand signal of unique reads) 76.6 MB
ENCFF280HZZ.bigWig bigWig (minus strand signal of unique reads) 71.3 MB
ENCFF283YYO.bigWig bigWig (plus strand signal of unique reads) 77.0 MB
ENCFF299DKX.bam bam (alignments) 3.7 GB
ENCFF307SBE.bam bam (alignments) 4.1 GB
ENCFF313HBF.bigWig bigWig (minus strand signal of all reads) 83.0 MB
ENCFF331CFB.bigWig bigWig (minus strand signal of all reads) 82.0 MB
ENCFF332FDY.tsv tsv (transcript quantifications) 29.8 MB
ENCFF334IKE.tsv tsv (transcript quantifications) 27.3 MB
ENCFF335UIO.bigWig bigWig (minus strand signal of unique reads) 67.3 MB
ENCFF404IFV.tsv tsv (gene quantifications) 10.4 MB
ENCFF406QLI.fastq fastq (reads) 2.4 GB
ENCFF421MGM.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF443ZDR.bigWig bigWig (minus strand signal of unique reads) 71.3 MB
ENCFF451DVO.bigWig bigWig (minus strand signal of all reads) 73.1 MB
ENCFF462MYK.bigWig bigWig (minus strand signal of all reads) 68.9 MB
ENCFF475KTX.bam bam (alignments) 3.3 GB
ENCFF488QMD.bigWig bigWig (minus strand signal of unique reads) 71.6 MB
ENCFF496XDW.bigWig bigWig (minus strand signal of all reads) 78.0 MB
ENCFF499QXB.tsv tsv (transcript quantifications) 25.3 MB
ENCFF501GNI.tsv tsv (transcript quantifications) 29.8 MB
ENCFF505WFW.bigWig bigWig (minus strand signal of unique reads) 74.5 MB
ENCFF514QXT.bigWig bigWig (plus strand signal of all reads) 84.4 MB
ENCFF530SAA.bigWig bigWig (plus strand signal of unique reads) 73.3 MB
ENCFF542ONY.tar tar (differential splicing quantifications) 3.3 MB
ENCFF546RMR.bigWig bigWig (plus strand signal of all reads) 84.5 MB
ENCFF567DBY.bigWig bigWig (minus strand signal of unique reads) 67.6 MB
ENCFF582THU.tsv tsv (differential expression quantifications) 1.8 MB
ENCFF583PTO.bam bam (transcriptome alignments) 5.0 GB
ENCFF592WXK.bigWig bigWig (plus strand signal of all reads) 81.0 MB
ENCFF599ZBJ.bigWig bigWig (plus strand signal of all reads) 70.3 MB
ENCFF609AMH.tsv tsv (differential expression quantifications) 4.2 MB
ENCFF610HJS.bigWig bigWig (minus strand signal of unique reads) 63.5 MB
ENCFF655OMY.tsv tsv (gene quantifications) 9.4 MB
ENCFF694XYU.bigWig bigWig (plus strand signal of unique reads) 73.3 MB
ENCFF698FMW.tsv tsv (transcript quantifications) 25.3 MB
ENCFF716ZSB.tsv tsv (gene quantifications) 9.4 MB
ENCFF723MFR.bigWig bigWig (minus strand signal of all reads) 79.4 MB
ENCFF733CSA.bigWig bigWig (plus strand signal of all reads) 79.5 MB
ENCFF739XYN.fastq fastq (reads) 2.2 GB
ENCFF750WZQ.bigWig bigWig (plus strand signal of all reads) 74.6 MB
ENCFF756WDK.bigWig bigWig (minus strand signal of all reads) 83.0 MB
ENCFF766WSJ.bam bam (transcriptome alignments) 5.7 GB
ENCFF787TFD.tsv tsv (gene quantifications) 9.1 MB
ENCFF793FVI.bigWig bigWig (minus strand signal of all reads) 76.0 MB
ENCFF807AKV.tar tar (differential splicing quantifications) 2.9 MB
ENCFF807YHN.bam bam (alignments) 3.6 GB
ENCFF813DRV.bigWig bigWig (minus strand signal of all reads) 79.4 MB
ENCFF818TLR.tsv tsv (transcript quantifications) 24.9 MB
ENCFF827XWW.tsv tsv (gene quantifications) 9.1 MB
ENCFF832GFO.bigWig bigWig (plus strand signal of all reads) 81.0 MB
ENCFF845LSD.bigWig bigWig (plus strand signal of unique reads) 72.4 MB
ENCFF851ILO.bam bam (alignments) 4.1 GB
ENCFF851SGN.bigWig bigWig (plus strand signal of all reads) 74.2 MB
ENCFF852CHB.tsv tsv (gene quantifications) 10.4 MB
ENCFF883XJO.bigWig bigWig (plus strand signal of unique reads) 73.7 MB
ENCFF888QAR.bam bam (alignments) 4.2 GB
ENCFF897IPW.bigWig bigWig (plus strand signal of unique reads) 76.6 MB
ENCFF906SQD.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF910VPN.bigWig bigWig (minus strand signal of all reads) 78.1 MB
ENCFF947ZHA.bigWig bigWig (plus strand signal of all reads) 79.6 MB
ENCFF948SMG.bigWig bigWig (plus strand signal of unique reads) 65.6 MB
ENCFF950XJM.bigWig bigWig (minus strand signal of unique reads) 72.1 MB
ENCFF956YXE.bigWig bigWig (plus strand signal of unique reads) 70.1 MB
ENCFF962ZXH.bigWig bigWig (plus strand signal of unique reads) 69.6 MB
ENCFF970SWB.tsv tsv (transcript quantifications) 27.2 MB
ENCFF986GWR.tar tar (differential splicing quantifications) 14.5 MB
ENCSR981WKN ENCSR · via encode_api

eCLIP experiment on K562 against PTBP1

Homo sapiens

36 data files
FileTypeSize
ENCFF019TEQ.fastq fastq (reads) 172.5 MB
ENCFF022TVE.bigBed bigBed (peaks) 3.0 MB
ENCFF088RLJ.bigBed bigBed (peaks) 3.0 MB
ENCFF105HCP.bigWig bigWig (plus strand signal of unique reads) 11.5 MB
ENCFF166LLH.bed bed (peaks) 273.0 KB
ENCFF172FTR.bigWig bigWig (minus strand signal of unique reads) 11.0 MB
ENCFF196VDD.bed bed (peaks) 200.1 KB
ENCFF200AWX.bed bed (peaks) 1.4 MB
ENCFF247DQN.bam bam (alignments) 192.4 MB
ENCFF258TKH.bigWig bigWig (plus strand signal of unique reads) 11.3 MB
ENCFF262NXW.bed bed (peaks) 988.7 KB
ENCFF273VIJ.fastq fastq (reads) 297.1 MB
ENCFF374QZV.bigBed bigBed (peaks) 2.5 MB
ENCFF467YAF.bigBed bigBed (peaks) 1.3 MB
ENCFF517FVN.bam bam (alignments) 295.4 MB
ENCFF525OKR.bed bed (peaks) 510.0 KB
ENCFF536XRN.bigWig bigWig (plus strand signal of unique reads) 16.6 MB
ENCFF577HFG.bed bed (peaks) 691.2 KB
ENCFF594PWG.bed bed (peaks) 981.3 KB
ENCFF616KCQ.bigWig bigWig (minus strand signal of unique reads) 15.9 MB
ENCFF617YCT.bigWig bigWig (minus strand signal of unique reads) 10.7 MB
ENCFF659RKW.bam bam (alignments) 285.7 MB
ENCFF678FIR.bigBed bigBed (peaks) 491.5 KB
ENCFF689XJE.fastq fastq (reads) 174.6 MB
ENCFF692FYQ.bigBed bigBed (peaks) 618.1 KB
ENCFF699ABN.bigBed bigBed (peaks) 1.9 MB
ENCFF764BOF.bigBed bigBed (peaks) 1.7 MB
ENCFF765BPN.bam bam (alignments) 187.5 MB
ENCFF780LWA.bigBed bigBed (peaks) 1.7 MB
ENCFF799AHI.bigWig bigWig (minus strand signal of unique reads) 15.5 MB
ENCFF894KLP.bed bed (peaks) 1.4 MB
ENCFF907HNN.bed bed (peaks) 158.6 KB
ENCFF924CZR.bed bed (peaks) 155.2 KB
ENCFF927TVJ.bigBed bigBed (peaks) 1019.9 KB
ENCFF967LWB.bigWig bigWig (plus strand signal of unique reads) 16.2 MB
ENCFF989UNR.fastq fastq (reads) 290.7 MB
ENCSR539ZTS ENCSR · via encode_api

eCLIP experiment on K562 against TROVE2

Homo sapiens

36 data files
FileTypeSize
ENCFF020CTE.bigWig bigWig (minus strand signal of unique reads) 18.2 MB
ENCFF043TCO.bed bed (peaks) 1.4 MB
ENCFF053TCK.fastq fastq (reads) 680.7 MB
ENCFF063MVN.bam bam (alignments) 289.5 MB
ENCFF097KHA.bigBed bigBed (peaks) 1.7 MB
ENCFF099GQV.bed bed (peaks) 152.5 KB
ENCFF108KYH.fastq fastq (reads) 517.4 MB
ENCFF128FEU.bed bed (peaks) 161.7 KB
ENCFF132WZM.bigBed bigBed (peaks) 842.2 KB
ENCFF145LAT.fastq fastq (reads) 545.3 MB
ENCFF156NTC.bigWig bigWig (plus strand signal of unique reads) 17.2 MB
ENCFF201UGT.bigBed bigBed (peaks) 420.9 KB
ENCFF220AMQ.bigWig bigWig (plus strand signal of unique reads) 18.5 MB
ENCFF240PML.bigBed bigBed (peaks) 898.5 KB
ENCFF243GNO.bed bed (peaks) 1.8 MB
ENCFF294FZI.bam bam (alignments) 335.4 MB
ENCFF332RLS.bigWig bigWig (plus strand signal of unique reads) 18.9 MB
ENCFF347INC.bigBed bigBed (peaks) 3.6 MB
ENCFF355URY.bigWig bigWig (minus strand signal of unique reads) 17.6 MB
ENCFF365GQC.bigBed bigBed (peaks) 3.5 MB
ENCFF402DTY.bed bed (peaks) 1.7 MB
ENCFF494JCL.bigBed bigBed (peaks) 392.5 KB
ENCFF507IRG.bed bed (peaks) 1.3 MB
ENCFF514NWO.bed bed (peaks) 11.6 KB
ENCFF568HWB.bam bam (alignments) 303.4 MB
ENCFF580LAY.bigWig bigWig (plus strand signal of unique reads) 16.6 MB
ENCFF581RBS.bam bam (alignments) 345.4 MB
ENCFF649JOH.bed bed (peaks) 422.7 KB
ENCFF701ABR.bigWig bigWig (minus strand signal of unique reads) 16.0 MB
ENCFF748AHJ.bigBed bigBed (peaks) 1.5 MB
ENCFF794RJQ.bed bed (peaks) 11.2 KB
ENCFF813JKM.bed bed (peaks) 447.2 KB
ENCFF815JMM.fastq fastq (reads) 647.8 MB
ENCFF870EKX.bigWig bigWig (minus strand signal of unique reads) 16.5 MB
ENCFF996ZNV.bigBed bigBed (peaks) 2.3 MB
ENCFF998MHJ.bigBed bigBed (peaks) 2.2 MB
ENCSR773KRC ENCSR · via encode_api

eCLIP experiment on HepG2 against SRSF9

Homo sapiens

36 data files
FileTypeSize
ENCFF038QQM.fastq fastq (reads) 228.5 MB
ENCFF071WZV.bigWig bigWig (plus strand signal of unique reads) 14.9 MB
ENCFF075NSB.bed bed (peaks) 14.8 KB
ENCFF125UVA.bed bed (peaks) 1.1 MB
ENCFF133GHS.bigWig bigWig (plus strand signal of unique reads) 12.5 MB
ENCFF186YPQ.bigBed bigBed (peaks) 1.1 MB
ENCFF189JPN.bigBed bigBed (peaks) 2.3 MB
ENCFF201APJ.bigBed bigBed (peaks) 1.5 MB
ENCFF207BLP.bigWig bigWig (plus strand signal of unique reads) 14.9 MB
ENCFF223YZP.bigBed bigBed (peaks) 3.1 MB
ENCFF236WOT.bigWig bigWig (minus strand signal of unique reads) 14.4 MB
ENCFF270UPC.bed bed (peaks) 567.5 KB
ENCFF327JJE.bed bed (peaks) 1.1 MB
ENCFF328SYC.bigWig bigWig (minus strand signal of unique reads) 14.4 MB
ENCFF354DZK.fastq fastq (reads) 295.4 MB
ENCFF409GPI.bed bed (peaks) 1.4 MB
ENCFF413CWK.bigWig bigWig (minus strand signal of unique reads) 12.1 MB
ENCFF432ASF.bed bed (peaks) 1.5 MB
ENCFF460TAE.bam bam (alignments) 203.5 MB
ENCFF481BSO.bigBed bigBed (peaks) 1.9 MB
ENCFF490SUS.bigBed bigBed (peaks) 510.2 KB
ENCFF500JQA.bigWig bigWig (minus strand signal of unique reads) 12.1 MB
ENCFF529OUY.bed bed (peaks) 206.8 KB
ENCFF573SHV.bigBed bigBed (peaks) 3.0 MB
ENCFF589NCU.fastq fastq (reads) 238.3 MB
ENCFF593PCX.bam bam (alignments) 260.3 MB
ENCFF594WVG.bed bed (peaks) 843.4 KB
ENCFF636PHB.bigBed bigBed (peaks) 1.8 MB
ENCFF651VGM.bam bam (alignments) 260.1 MB
ENCFF709HAD.bam bam (alignments) 203.7 MB
ENCFF765PIF.bed bed (peaks) 15.0 KB
ENCFF853NSA.bigWig bigWig (plus strand signal of unique reads) 12.5 MB
ENCFF912JVC.fastq fastq (reads) 278.9 MB
ENCFF941JLL.bigBed bigBed (peaks) 697.5 KB
ENCFF946ENX.bigBed bigBed (peaks) 2.9 MB
ENCFF979SAC.bed bed (peaks) 319.3 KB
ENCSR658IQB ENCSR · via encode_api

eCLIP experiment on K562 against SMNDC1

Homo sapiens

36 data files
FileTypeSize
ENCFF081WGA.bed bed (peaks) 540.0 KB
ENCFF087QQF.bigWig bigWig (minus strand signal of unique reads) 16.2 MB
ENCFF090PBR.bigBed bigBed (peaks) 477.8 KB
ENCFF092WOP.bigWig bigWig (plus strand signal of unique reads) 16.4 MB
ENCFF119DHE.bed bed (peaks) 53.6 KB
ENCFF142PZD.bed bed (peaks) 1.1 MB
ENCFF144FQQ.bigBed bigBed (peaks) 1.9 MB
ENCFF151TID.bigBed bigBed (peaks) 2.7 MB
ENCFF232GGD.bigWig bigWig (plus strand signal of unique reads) 17.2 MB
ENCFF253SPF.bam bam (alignments) 323.5 MB
ENCFF276WKC.bigBed bigBed (peaks) 483.5 KB
ENCFF317RZD.fastq fastq (reads) 623.8 MB
ENCFF372GBO.fastq fastq (reads) 636.6 MB
ENCFF416KSJ.bigBed bigBed (peaks) 2.1 MB
ENCFF457GTR.fastq fastq (reads) 618.7 MB
ENCFF462RQB.bed bed (peaks) 188.5 KB
ENCFF501FLH.bed bed (peaks) 203.0 KB
ENCFF563QPR.bigWig bigWig (minus strand signal of unique reads) 15.7 MB
ENCFF564JRL.bigBed bigBed (peaks) 2.7 MB
ENCFF581FUT.bed bed (peaks) 1.3 MB
ENCFF598SKR.bigWig bigWig (minus strand signal of unique reads) 15.4 MB
ENCFF600JOR.bigWig bigWig (plus strand signal of unique reads) 16.4 MB
ENCFF630RFF.bigBed bigBed (peaks) 2.4 MB
ENCFF723GHJ.bed bed (peaks) 1.1 MB
ENCFF770DEI.bam bam (alignments) 246.4 MB
ENCFF817JQS.bam bam (alignments) 339.4 MB
ENCFF828HTD.bed bed (peaks) 557.4 KB
ENCFF851QPV.bam bam (alignments) 250.6 MB
ENCFF857IFN.bigBed bigBed (peaks) 1.0 MB
ENCFF872VFP.bigWig bigWig (minus strand signal of unique reads) 15.3 MB
ENCFF877YKQ.bigWig bigWig (plus strand signal of unique reads) 16.2 MB
ENCFF909OTT.fastq fastq (reads) 660.8 MB
ENCFF927UFK.bed bed (peaks) 1.3 MB
ENCFF929QZE.bigBed bigBed (peaks) 1.0 MB
ENCFF938SQK.bigBed bigBed (peaks) 2.0 MB
ENCFF943XOU.bed bed (peaks) 52.6 KB
ENCSR569UIU ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) pulldown experiment against hnRNPC

13 data files
FileTypeSize
ENCFF083JEO.fastq fastq (reads) 270.9 MB
ENCFF161YRQ.fastq fastq (reads) 379.0 MB
ENCFF235WCJ.fastq fastq (reads) 249.1 MB
ENCFF266NJN.tsv tsv (enrichment) 14.8 KB
ENCFF304NRR.fastq fastq (reads) 244.9 MB
ENCFF366SWO.fastq fastq (reads) 340.5 MB
ENCFF370OUE.bed bed (peaks) 40.7 KB
ENCFF380JJG.tsv tsv (enrichment) 244.0 KB
ENCFF437UNW.tsv tsv (library fraction) 17.8 KB
ENCFF592FMJ.tsv tsv (enrichment) 60.0 KB
ENCFF660VBL.tsv tsv (library fraction) 75.3 KB
ENCFF762UHX.tsv tsv (library fraction) 313.0 KB
ENCFF910BCQ.bed bed (peaks) 223.8 KB
ENCSR919HSE ENCSR · via encode_api

eCLIP experiment on HepG2 against CSTF2T

Homo sapiens

36 data files
FileTypeSize
ENCFF004SPT.bed bed (peaks) 932.4 KB
ENCFF019IEW.bed bed (peaks) 3.2 MB
ENCFF043WLS.bigBed bigBed (peaks) 1.8 MB
ENCFF093WJU.fastq fastq (reads) 669.9 MB
ENCFF097YMJ.bigWig bigWig (plus strand signal of unique reads) 36.1 MB
ENCFF141DOI.bed bed (peaks) 466.9 KB
ENCFF208OVE.bam bam (alignments) 809.1 MB
ENCFF212AOD.bigWig bigWig (plus strand signal of unique reads) 36.0 MB
ENCFF240AIR.bigBed bigBed (peaks) 5.6 MB
ENCFF268ECW.bam bam (alignments) 812.9 MB
ENCFF313BCR.fastq fastq (reads) 543.2 MB
ENCFF330SZX.bed bed (peaks) 894.1 KB
ENCFF336QYP.bigBed bigBed (peaks) 786.2 KB
ENCFF346HHC.bam bam (alignments) 775.1 MB
ENCFF444JQZ.bigWig bigWig (minus strand signal of unique reads) 34.4 MB
ENCFF478SRR.bigBed bigBed (peaks) 5.7 MB
ENCFF550EJC.bigBed bigBed (peaks) 5.3 MB
ENCFF559OUM.bigBed bigBed (peaks) 1.7 MB
ENCFF562AZL.bam bam (alignments) 773.3 MB
ENCFF575KNT.bigBed bigBed (peaks) 3.1 MB
ENCFF625AZC.bed bed (peaks) 3.0 MB
ENCFF630RYF.bigBed bigBed (peaks) 3.3 MB
ENCFF649JWC.bigWig bigWig (plus strand signal of unique reads) 33.7 MB
ENCFF700HIR.bed bed (peaks) 3.2 MB
ENCFF703DUZ.bigBed bigBed (peaks) 5.2 MB
ENCFF762SDS.bigBed bigBed (peaks) 837.9 KB
ENCFF762UXF.fastq fastq (reads) 591.2 MB
ENCFF786JAM.bed bed (peaks) 3.0 MB
ENCFF787TEA.bigWig bigWig (minus strand signal of unique reads) 32.8 MB
ENCFF795LDZ.bed bed (peaks) 360.3 KB
ENCFF818WAX.bed bed (peaks) 341.0 KB
ENCFF843RIM.bigWig bigWig (minus strand signal of unique reads) 32.8 MB
ENCFF854JCC.bigWig bigWig (plus strand signal of unique reads) 33.7 MB
ENCFF860GJP.fastq fastq (reads) 461.5 MB
ENCFF894CWQ.bigWig bigWig (minus strand signal of unique reads) 34.4 MB
ENCFF945YRD.bed bed (peaks) 465.0 KB
ENCSR289FYJ ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) mock pulldown control experiment of SRSF4

1 data file
FileTypeSize
ENCFF637PAB.fastq fastq (reads) 231.6 MB
ENCSR624XHG ENCSR · via encode_api

RNA-seq on K562 cells treated with an shRNA knockdown against RNASEN. (RNASEN50_BGKLV28)

Homo sapiens

92 data files
FileTypeSize
ENCFF012PAP.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 118.9 MB
ENCFF067JET.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.9 MB
ENCFF100EKM.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.4 MB
ENCFF104OHS.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF114WCP.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 108.3 MB
ENCFF120YLV.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 98.3 MB
ENCFF126VJO.bam bam (alignments); assembly: hg19; genome annotation: V19 4.5 GB
ENCFF129DKP.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.5 MB
ENCFF131GXH.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 90.8 MB
ENCFF142HEJ.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 119.9 MB
ENCFF154YPK.fastq fastq (reads) 3.8 GB
ENCFF155QSK.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 9.7 GB
ENCFF157QDG.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 88.9 MB
ENCFF161SDP.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 81.2 MB
ENCFF186CXG.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 97.2 MB
ENCFF204IXM.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.5 GB
ENCFF245BDJ.bam bam (alignments); assembly: GRCh38; genome annotation: V24 5.2 GB
ENCFF259PPF.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 7.3 GB
ENCFF269VLX.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.8 MB
ENCFF278QDW.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 82.5 MB
ENCFF292BWQ.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.6 MB
ENCFF294ABN.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 100.6 MB
ENCFF294QPX.fastq fastq (reads) 3.3 GB
ENCFF306APY.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 118.9 MB
ENCFF307TTC.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 4.2 MB
ENCFF329PPH.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 98.5 MB
ENCFF334UMF.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 25.0 MB
ENCFF356EEX.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 84.5 MB
ENCFF362VKF.bam bam (alignments); assembly: hg19; genome annotation: V19 5.6 GB
ENCFF377KCC.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 8.5 GB
ENCFF378AUD.fastq fastq (reads) 3.2 GB
ENCFF381YYY.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 89.0 MB
ENCFF382SWC.bam bam (alignments); assembly: hg19; genome annotation: V19 6.4 GB
ENCFF398WDB.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 8.4 GB
ENCFF402EZW.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 88.4 MB
ENCFF404BVC.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 88.4 MB
ENCFF405UDH.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 100.6 MB
ENCFF424KHO.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 102.0 MB
ENCFF425XBR.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 106.0 MB
ENCFF427JWG.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.5 MB
ENCFF444PQS.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 92.7 MB
ENCFF445AXE.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 91.2 MB
ENCFF446IDQ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 83.4 MB
ENCFF452OFU.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 105.7 MB
ENCFF466PBI.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 103.3 MB
ENCFF467VSO.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 17.0 MB
ENCFF475GCB.bam bam (alignments); assembly: hg19; genome annotation: V19 5.2 GB
ENCFF490NYC.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 8.4 GB
ENCFF503GSW.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 99.0 MB
ENCFF520WPX.bam bam (alignments); assembly: GRCh38; genome annotation: V24 5.6 GB
ENCFF562NVB.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 102.1 MB
ENCFF575EAN.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF577SWG.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 7.3 GB
ENCFF601TYU.bam bam (alignments); assembly: GRCh38; genome annotation: V29 6.6 GB
ENCFF607YSC.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 116.8 MB
ENCFF615WGE.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 105.0 MB
ENCFF618RBA.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 103.9 MB
ENCFF622NGU.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 107.0 MB
ENCFF634FHW.bam bam (alignments); assembly: GRCh38; genome annotation: V29 5.6 GB
ENCFF649TZL.fastq fastq (reads) 3.7 GB
ENCFF660EZD.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 90.3 MB
ENCFF697YJW.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 118.1 MB
ENCFF709WDU.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 90.0 MB
ENCFF722WSR.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.5 MB
ENCFF724MNO.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 102.9 MB
ENCFF739FKP.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 96.0 MB
ENCFF747BCJ.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 5.7 MB
ENCFF772BWX.bam bam (alignments); assembly: hg19; genome annotation: V19 4.5 GB
ENCFF774EZG.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 4.1 MB
ENCFF779SKP.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 90.6 MB
ENCFF786DIH.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF803YDM.bam bam (alignments); assembly: hg19; genome annotation: V19 5.2 GB
ENCFF809TWR.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF815TSM.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.4 MB
ENCFF826VFR.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 89.5 MB
ENCFF833ZZN.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 103.4 MB
ENCFF834IMD.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 103.3 MB
ENCFF835GLF.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 110.1 MB
ENCFF839OEK.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 84.3 MB
ENCFF855XIJ.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 105.9 MB
ENCFF869EAM.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.9 MB
ENCFF876HQP.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.9 MB
ENCFF897YYC.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 119.9 MB
ENCFF908GII.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 105.2 MB
ENCFF920ZRH.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 82.6 MB
ENCFF921DYM.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.4 MB
ENCFF926NRS.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 5.1 MB
ENCFF937LAI.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF943ZKS.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 106.9 MB
ENCFF944XRF.bam bam (alignments); assembly: GRCh38; genome annotation: V24 6.5 GB
ENCFF989FFV.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 102.1 MB
ENCFF996DRC.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 91.1 MB
ENCSR118KUN ENCSR · via encode_api

RNA-seq on HepG2 cells treated with an shRNA knockdown against DKC1. (DKC1_BGHLV31)

Homo sapiens

92 data files
FileTypeSize
ENCFF006DCI.bam bam (alignments); assembly: hg19; genome annotation: V19 2.9 GB
ENCFF010XMU.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 79.1 MB
ENCFF042IRV.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 90.9 MB
ENCFF051RWP.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 76.3 MB
ENCFF074UOC.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 82.9 MB
ENCFF079NDM.fastq fastq (reads) 2.1 GB
ENCFF081TVE.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 68.6 MB
ENCFF097XMM.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF104QSG.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 78.3 MB
ENCFF121PKE.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 5.4 GB
ENCFF127EOT.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF201FNN.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 76.1 MB
ENCFF210PCK.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 3.0 MB
ENCFF232WWV.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 80.2 MB
ENCFF238EAM.bam bam (alignments); assembly: GRCh38; genome annotation: V29 3.7 GB
ENCFF242SVU.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 65.7 MB
ENCFF261HZZ.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 79.2 MB
ENCFF265NMT.bam bam (alignments); assembly: hg19; genome annotation: V19 2.9 GB
ENCFF275TGS.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.8 GB
ENCFF307UVH.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 62.3 MB
ENCFF316TWR.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 71.6 MB
ENCFF322BTG.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 69.2 MB
ENCFF326TSG.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 77.2 MB
ENCFF331OLI.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 6.1 GB
ENCFF331YCN.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.0 GB
ENCFF338ITW.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 81.8 MB
ENCFF342FKU.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 67.7 MB
ENCFF348QZY.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 75.2 MB
ENCFF353CHU.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.7 MB
ENCFF368WCW.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.7 GB
ENCFF376BRV.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 81.8 MB
ENCFF389WUG.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.5 MB
ENCFF401INB.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 78.9 MB
ENCFF408VTX.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 69.5 MB
ENCFF418BSD.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 5.1 GB
ENCFF424OZB.fastq fastq (reads) 2.2 GB
ENCFF431AYA.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.3 MB
ENCFF432CSP.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 5.5 MB
ENCFF432KPL.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 4.4 MB
ENCFF445OKE.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF447CYY.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF454DDZ.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 79.2 MB
ENCFF454QYL.bam bam (alignments); assembly: hg19; genome annotation: V19 3.6 GB
ENCFF467ENX.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF469DLK.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 67.6 MB
ENCFF475BKB.fastq fastq (reads) 2.1 GB
ENCFF490AKC.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 88.7 MB
ENCFF499YUG.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 77.3 MB
ENCFF502LYA.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 68.2 MB
ENCFF511YWA.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 71.6 MB
ENCFF514EXA.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 16.7 MB
ENCFF532VXO.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 82.0 MB
ENCFF535UYN.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 84.8 MB
ENCFF536YNR.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 69.9 MB
ENCFF538HEL.bam bam (alignments); assembly: GRCh38; genome annotation: V29 3.8 GB
ENCFF557DJT.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.0 GB
ENCFF562AVH.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 79.0 MB
ENCFF572VRD.bam bam (alignments); assembly: hg19; genome annotation: V19 3.5 GB
ENCFF574GUO.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 89.0 MB
ENCFF578KNE.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF587VGK.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.9 MB
ENCFF603AVZ.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 73.0 MB
ENCFF633GCR.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 76.5 MB
ENCFF634VJC.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 64.4 MB
ENCFF639TMJ.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 71.3 MB
ENCFF664QIX.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 66.1 MB
ENCFF680VCW.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 81.1 MB
ENCFF688YAP.bam bam (alignments); assembly: hg19; genome annotation: V19 2.9 GB
ENCFF697BEM.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 69.4 MB
ENCFF706MGC.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF712RNK.bam bam (alignments); assembly: hg19; genome annotation: V19 2.9 GB
ENCFF729RTQ.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 89.0 MB
ENCFF736IUG.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 77.7 MB
ENCFF790AZV.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 70.7 MB
ENCFF796UNZ.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 90.3 MB
ENCFF841XPZ.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 4.0 MB
ENCFF865IUR.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 72.8 MB
ENCFF900FTE.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 90.9 MB
ENCFF906PDZ.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF907PKS.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 79.4 MB
ENCFF919MIA.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF940PFC.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.4 MB
ENCFF943LNW.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 71.3 MB
ENCFF953ELM.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 3.3 MB
ENCFF956GKF.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 81.6 MB
ENCFF956OVZ.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 5.0 GB
ENCFF967HIG.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF973PMG.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 5.8 GB
ENCFF975XQH.fastq fastq (reads) 2.2 GB
ENCFF988YNW.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 5.3 GB
ENCFF995LBP.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 79.3 MB
ENCFF997DOI.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCSR560RSZ ENCSR · via encode_api

shRNA knockdown against DDX52_06 in K562 cells followed by RNA-seq. (DDX52_BGKLV19)

Homo sapiens

92 data files
FileTypeSize
ENCFF005CIQ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 75.6 MB
ENCFF013YLN.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF014DGM.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 92.4 MB
ENCFF037OAP.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 86.1 MB
ENCFF046SYF.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 82.2 MB
ENCFF070OXC.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 90.2 MB
ENCFF075JON.fastq fastq (reads) 2.5 GB
ENCFF081AHZ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 72.7 MB
ENCFF084GGK.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 80.1 MB
ENCFF088OTT.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 3.4 MB
ENCFF125GEQ.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 82.8 MB
ENCFF127KXZ.bam bam (alignments); assembly: GRCh38; genome annotation: V29 4.8 GB
ENCFF134AUV.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 81.7 MB
ENCFF143ORL.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 85.1 MB
ENCFF147PIU.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.4 MB
ENCFF150HWI.fastq fastq (reads) 2.3 GB
ENCFF166LCZ.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 70.7 MB
ENCFF198GLG.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 79.5 MB
ENCFF206OOZ.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 83.0 MB
ENCFF212CVT.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.8 MB
ENCFF234YRX.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 78.2 MB
ENCFF242HIL.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 5.5 MB
ENCFF272HKN.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 76.5 MB
ENCFF290TFQ.fastq fastq (reads) 2.2 GB
ENCFF299QHA.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 78.2 MB
ENCFF317RWL.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 80.1 MB
ENCFF327PGP.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 73.7 MB
ENCFF334JZI.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 83.3 MB
ENCFF336MTN.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF338UJR.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF341GDK.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 4.8 GB
ENCFF343ZNU.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF344JDU.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 75.3 MB
ENCFF345SIU.bam bam (alignments); assembly: hg19; genome annotation: V19 3.9 GB
ENCFF362LAA.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 93.7 MB
ENCFF374VEA.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 83.7 MB
ENCFF383HNM.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF398WLJ.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.2 GB
ENCFF426XLC.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF429WFE.bam bam (alignments); assembly: hg19; genome annotation: V19 3.9 GB
ENCFF469EBA.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 78.0 MB
ENCFF472TXR.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF477UQU.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 84.8 MB
ENCFF504FXZ.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 95.3 MB
ENCFF549AQP.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 77.5 MB
ENCFF561OEM.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 80.7 MB
ENCFF562IQG.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 6.2 GB
ENCFF574BOB.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF584IBH.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 81.3 MB
ENCFF592BEG.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 74.7 MB
ENCFF595WMJ.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 89.1 MB
ENCFF606WUK.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 79.0 MB
ENCFF615OHL.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 95.3 MB
ENCFF627LWK.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 85.1 MB
ENCFF651POU.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.7 MB
ENCFF662LND.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 77.9 MB
ENCFF671IES.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 5.5 GB
ENCFF687TRM.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF691JRW.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 89.6 MB
ENCFF699TOM.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 3.9 MB
ENCFF721UCM.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.0 GB
ENCFF724MZM.bam bam (alignments); assembly: GRCh38; genome annotation: V29 4.2 GB
ENCFF749WVO.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.5 GB
ENCFF750JSQ.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 90.2 MB
ENCFF770AIB.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 4.1 MB
ENCFF770UDB.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 14.9 MB
ENCFF773SQT.bam bam (alignments); assembly: hg19; genome annotation: V19 3.5 GB
ENCFF779PSE.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 89.1 MB
ENCFF795DIJ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 81.1 MB
ENCFF796EGU.fastq fastq (reads) 2.4 GB
ENCFF798KAI.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.0 MB
ENCFF807UXT.bam bam (alignments); assembly: hg19; genome annotation: V19 3.5 GB
ENCFF812VFP.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 83.1 MB
ENCFF817BSA.bam bam (alignments); assembly: hg19; genome annotation: V19 4.1 GB
ENCFF823GPW.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 79.7 MB
ENCFF826NMS.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.8 GB
ENCFF830VBK.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 84.1 MB
ENCFF833OKT.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 87.6 MB
ENCFF854JTS.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 79.8 MB
ENCFF866PLF.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 94.1 MB
ENCFF883BCP.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 5.4 GB
ENCFF885JUQ.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 73.7 MB
ENCFF887MWJ.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 5.4 GB
ENCFF894UJY.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF914EUS.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 88.4 MB
ENCFF928QMV.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF932XPP.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.3 MB
ENCFF935IWT.bam bam (alignments); assembly: hg19; genome annotation: V19 4.6 GB
ENCFF945ZGY.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF951XGB.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 94.1 MB
ENCFF975UHW.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 76.8 MB
ENCFF996OQB.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 4.8 GB
ENCSR706SXN ENCSR · via encode_api

shRNA knockdown against RPL23A in HepG2 cells followed by RNA-seq. (RPL23A_BGHLV18)

Homo sapiens

92 data files
FileTypeSize
ENCFF003MMZ.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 73.5 MB
ENCFF006SJD.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 80.4 MB
ENCFF008LKR.bam bam (alignments); assembly: GRCh38; genome annotation: V24 6.1 GB
ENCFF031CNE.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.3 GB
ENCFF031WXP.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF040PQN.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF041XDE.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 77.5 MB
ENCFF057JNB.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 15.2 MB
ENCFF059YGS.bam bam (alignments); assembly: hg19; genome annotation: V19 5.1 GB
ENCFF073DHZ.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.5 MB
ENCFF097FFJ.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 79.9 MB
ENCFF112LKY.bam bam (alignments); assembly: GRCh38; genome annotation: V29 6.1 GB
ENCFF131YVK.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.9 GB
ENCFF152ZNP.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 80.3 MB
ENCFF158OWV.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 67.7 MB
ENCFF178VCW.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF187AED.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 78.1 MB
ENCFF189OCG.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF201PMF.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 79.8 MB
ENCFF211EWC.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 71.7 MB
ENCFF219YZF.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 76.8 MB
ENCFF229GAB.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 66.7 MB
ENCFF233VTN.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 64.6 MB
ENCFF241PSP.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF251REA.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 66.6 MB
ENCFF254UMV.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 64.8 MB
ENCFF256VVE.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 66.3 MB
ENCFF259DBM.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 60.9 MB
ENCFF259FFA.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 3.2 MB
ENCFF285ZXW.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 7.3 GB
ENCFF296TBL.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF299PQX.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF305VZH.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 87.6 MB
ENCFF315AQR.fastq fastq (reads) 2.8 GB
ENCFF321SLT.bam bam (alignments); assembly: hg19; genome annotation: V19 3.2 GB
ENCFF332VZE.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 4.1 MB
ENCFF341ZWA.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 6.5 GB
ENCFF359MRN.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 89.1 MB
ENCFF366LHA.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.0 MB
ENCFF369QBK.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 66.7 MB
ENCFF395LTQ.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 72.7 MB
ENCFF398OEK.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 60.8 MB
ENCFF405DSR.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.4 MB
ENCFF408NTE.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 5.6 MB
ENCFF408YHV.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 89.2 MB
ENCFF410DHZ.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF454FOK.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 72.3 MB
ENCFF455OKF.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.3 MB
ENCFF460FAD.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 74.9 MB
ENCFF461PDY.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 63.5 MB
ENCFF478RJR.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.9 GB
ENCFF479JPH.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 5.5 GB
ENCFF479PFI.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 81.3 MB
ENCFF488NTT.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 3.7 MB
ENCFF535BCY.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 65.0 MB
ENCFF539ROA.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 4.9 GB
ENCFF545VIE.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 78.2 MB
ENCFF556OBI.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.7 MB
ENCFF565NCD.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 66.4 MB
ENCFF585POB.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 80.3 MB
ENCFF593XTS.fastq fastq (reads) 2.1 GB
ENCFF605KYS.bam bam (alignments); assembly: GRCh38; genome annotation: V29 3.9 GB
ENCFF617MUC.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 73.5 MB
ENCFF665BGI.fastq fastq (reads) 2.9 GB
ENCFF685IAT.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 59.1 MB
ENCFF687RQT.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF689NJW.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 62.3 MB
ENCFF690SAZ.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 65.5 MB
ENCFF699OJU.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF699WWV.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 82.7 MB
ENCFF713GYR.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 63.5 MB
ENCFF733PVX.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF744BEA.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.8 MB
ENCFF744CMI.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 78.2 MB
ENCFF783ONX.bam bam (alignments); assembly: hg19; genome annotation: V19 4.3 GB
ENCFF788FOV.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 75.0 MB
ENCFF813HGN.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 4.9 GB
ENCFF818YDS.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 72.3 MB
ENCFF821LNZ.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 78.3 MB
ENCFF849TYD.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 6.5 GB
ENCFF860CUV.bam bam (alignments); assembly: hg19; genome annotation: V19 4.3 GB
ENCFF884GTD.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 65.0 MB
ENCFF908CMF.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 61.8 MB
ENCFF916TOV.bam bam (alignments); assembly: hg19; genome annotation: V19 3.8 GB
ENCFF930ORR.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 86.7 MB
ENCFF944KYU.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 88.1 MB
ENCFF953DZL.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 87.6 MB
ENCFF955UAY.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 81.1 MB
ENCFF958DQA.bam bam (alignments); assembly: hg19; genome annotation: V19 3.2 GB
ENCFF962ATJ.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 75.4 MB
ENCFF978CWE.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 72.8 MB
ENCFF985OVL.fastq fastq (reads) 2.2 GB
ENCSR346DZQ ENCSR · via encode_api

RNA-seq on K562 cells treated with an shRNA knockdown against NPM1. (NPM1_BGKLV28)

Homo sapiens

92 data files
FileTypeSize
ENCFF026NQE.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 96.7 MB
ENCFF031QKP.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 90.4 MB
ENCFF043XSE.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 99.5 MB
ENCFF050EEL.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.4 MB
ENCFF051LFP.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 77.9 MB
ENCFF056ECX.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF098NKK.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 6.8 GB
ENCFF105TTM.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 103.4 MB
ENCFF107TLV.bam bam (alignments); assembly: hg19; genome annotation: V19 4.6 GB
ENCFF116YVJ.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 93.4 MB
ENCFF128CTG.bam bam (alignments); assembly: GRCh38; genome annotation: V29 5.7 GB
ENCFF133TRS.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 88.6 MB
ENCFF165BFX.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 95.8 MB
ENCFF166TYP.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.4 MB
ENCFF172YUQ.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.0 MB
ENCFF188KYP.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 7.8 GB
ENCFF195MUT.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.5 MB
ENCFF201SAL.bam bam (alignments); assembly: hg19; genome annotation: V19 4.9 GB
ENCFF211XEE.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 87.8 MB
ENCFF217OYM.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 89.0 MB
ENCFF243SHP.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 7.9 GB
ENCFF248OGO.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 7.0 GB
ENCFF250ZOU.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 88.8 MB
ENCFF257DVK.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 94.6 MB
ENCFF261EGT.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 93.5 MB
ENCFF261ZCZ.fastq fastq (reads) 3.2 GB
ENCFF274RPH.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF281NLI.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 85.2 MB
ENCFF284PZN.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 95.9 MB
ENCFF318HDI.bam bam (alignments); assembly: hg19; genome annotation: V19 4.9 GB
ENCFF318JOY.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.9 MB
ENCFF320AAI.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 87.0 MB
ENCFF355TWV.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 91.0 MB
ENCFF363FHH.bam bam (alignments); assembly: GRCh38; genome annotation: V29 6.1 GB
ENCFF365MWG.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 25.0 MB
ENCFF370RTV.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 6.9 GB
ENCFF385NZR.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.7 MB
ENCFF385TPW.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 94.3 MB
ENCFF393WNJ.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 103.4 MB
ENCFF410BUA.fastq fastq (reads) 3.4 GB
ENCFF412IZR.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 91.4 MB
ENCFF421LMB.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 82.0 MB
ENCFF427LXV.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 87.9 MB
ENCFF454XHB.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF484MHB.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 3.7 MB
ENCFF489YSB.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 101.0 MB
ENCFF493AWM.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 92.0 MB
ENCFF506KRW.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 86.9 MB
ENCFF517SWN.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 84.5 MB
ENCFF533LXA.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 4.2 MB
ENCFF535KPV.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 81.2 MB
ENCFF541MPX.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 105.7 MB
ENCFF547BNZ.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.7 GB
ENCFF551ZUS.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 90.4 MB
ENCFF552KVY.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 89.8 MB
ENCFF561ONI.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 83.1 MB
ENCFF569SVK.fastq fastq (reads) 3.4 GB
ENCFF570CWG.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 93.9 MB
ENCFF570HDW.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 105.9 MB
ENCFF574DCO.fastq fastq (reads) 3.2 GB
ENCFF578CKT.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.8 MB
ENCFF578YSM.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 107.4 MB
ENCFF600JAO.bam bam (alignments); assembly: GRCh38; genome annotation: V24 6.1 GB
ENCFF625PRU.bam bam (alignments); assembly: hg19; genome annotation: V19 4.6 GB
ENCFF629AWY.bam bam (alignments); assembly: GRCh38; genome annotation: V24 5.7 GB
ENCFF652SPG.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.4 MB
ENCFF654DUZ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 96.0 MB
ENCFF674FMM.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.9 GB
ENCFF695BJB.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 107.4 MB
ENCFF702VHJ.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF712XPP.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 5.5 MB
ENCFF726LPZ.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 96.0 MB
ENCFF734IDK.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF744LYB.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.4 MB
ENCFF749HSI.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 16.5 MB
ENCFF838WJE.bam bam (alignments); assembly: hg19; genome annotation: V19 5.9 GB
ENCFF845BTN.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.9 MB
ENCFF870INK.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 6.9 GB
ENCFF872GLW.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 4.6 MB
ENCFF881AOO.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 88.3 MB
ENCFF889SZD.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 91.4 MB
ENCFF890IOU.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 105.9 MB
ENCFF900SWS.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 80.1 MB
ENCFF907ZYC.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 101.9 MB
ENCFF910LJY.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.5 MB
ENCFF916EIK.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 81.8 MB
ENCFF945WPD.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 89.2 MB
ENCFF962JXR.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 107.3 MB
ENCFF970QFS.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 101.9 MB
ENCFF976UCJ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 84.1 MB
ENCFF986JGI.bam bam (alignments); assembly: hg19; genome annotation: V19 5.6 GB
ENCFF993CPG.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 97.8 MB
ENCSR788HVK ENCSR · via encode_api

shRNA knockdown against EIF3D in HepG2 cells followed by RNA-seq. (EIF3D_BGHLV16)

Homo sapiens

120 data files
FileTypeSize
ENCFF006BXJ.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 51.6 MB
ENCFF008ZDX.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 34.4 MB
ENCFF014YKV.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 49.0 MB
ENCFF019NHF.fastq fastq (reads) 2.4 GB
ENCFF026GST.bam bam (alignments); assembly: GRCh38; genome annotation: V24 2.2 GB
ENCFF027HLD.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 46.0 MB
ENCFF039MWD.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF041SUQ.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 58.7 MB
ENCFF042DSQ.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.9 MB
ENCFF053IGB.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 87.5 MB
ENCFF065HPX.bam bam (alignments); assembly: hg19; genome annotation: V19 4.6 GB
ENCFF081VUW.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 4.6 GB
ENCFF088NFF.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 57.8 MB
ENCFF098JNT.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 50.7 MB
ENCFF105ABG.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 101.2 MB
ENCFF105DJK.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 53.5 MB
ENCFF121JBQ.bam bam (alignments); assembly: hg19; genome annotation: V19 2.2 GB
ENCFF151PKN.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 63.9 MB
ENCFF152SSV.bam bam (alignments); assembly: GRCh38; genome annotation: V24 2.7 GB
ENCFF169PHR.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 91.4 MB
ENCFF172VQL.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF184QOW.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 91.0 MB
ENCFF185XIF.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 57.7 MB
ENCFF204UBA.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 55.1 MB
ENCFF220WSL.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.4 MB
ENCFF227URT.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 65.1 MB
ENCFF238NHR.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 55.7 MB
ENCFF242ETX.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 7.7 GB
ENCFF243XIW.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 57.8 MB
ENCFF247QOM.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 94.2 MB
ENCFF255SWF.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 58.5 MB
ENCFF273DCA.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 90.1 MB
ENCFF273PQS.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 54.4 MB
ENCFF277GFK.bam bam (alignments); assembly: hg19; genome annotation: V19 3.1 GB
ENCFF283NHN.bam bam (alignments); assembly: GRCh38; genome annotation: V29 2.7 GB
ENCFF299OGE.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 103.2 MB
ENCFF306CGQ.fastq fastq (reads) 1.4 GB
ENCFF308YKI.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 58.5 MB
ENCFF309BTW.fastq fastq (reads) 1.4 GB
ENCFF331YZM.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 7.8 GB
ENCFF340NRL.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF340UFH.bam bam (alignments); assembly: GRCh38; genome annotation: V24 5.7 GB
ENCFF356SLP.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 4.6 GB
ENCFF369JZT.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 49.7 MB
ENCFF378LOB.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 59.8 MB
ENCFF380WNV.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 51.9 MB
ENCFF392XWA.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 52.2 MB
ENCFF394VXT.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 35.2 MB
ENCFF400IPJ.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 13.4 MB
ENCFF410DJN.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 53.7 MB
ENCFF413DSW.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 57.9 MB
ENCFF418ZQF.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 3.6 GB
ENCFF421GPS.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 57.3 MB
ENCFF421ZFB.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF425AIX.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 94.2 MB
ENCFF434DIP.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.7 MB
ENCFF437XJR.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF440PXH.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 49.6 MB
ENCFF454XED.fastq fastq (reads) 817.9 MB
ENCFF457MSD.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 64.2 MB
ENCFF458ZTD.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF461QUP.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 94.0 MB
ENCFF464YAR.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 59.1 MB
ENCFF478PDL.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 47.4 MB
ENCFF490EKM.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 54.2 MB
ENCFF503SJK.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 59.5 MB
ENCFF516OTK.fastq fastq (reads) 2.4 GB
ENCFF518YAD.fastq fastq (reads) 843.8 MB
ENCFF520WKE.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 85.8 MB
ENCFF526QIM.bam bam (alignments); assembly: hg19; genome annotation: V19 1.3 GB
ENCFF531XYG.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 3.6 MB
ENCFF540SLS.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 3.2 GB
ENCFF546JVY.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 4.2 MB
ENCFF549RGR.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 59.1 MB
ENCFF557JDE.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 65.5 MB
ENCFF558SND.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.1 GB
ENCFF574FSE.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 59.5 MB
ENCFF581OJR.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF625QNK.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF626DCP.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.5 MB
ENCFF632VKV.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.1 MB
ENCFF650RID.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 33.3 MB
ENCFF702VNC.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 96.3 MB
ENCFF706CBY.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 50.3 MB
ENCFF708DON.bam bam (alignments); assembly: hg19; genome annotation: V19 5.6 GB
ENCFF709LIK.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 3.2 GB
ENCFF713UFE.bam bam (alignments); assembly: hg19; genome annotation: V19 2.6 GB
ENCFF715UJA.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.2 MB
ENCFF729XHE.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 51.1 MB
ENCFF730EZU.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 92.4 MB
ENCFF730YOA.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 8.8 GB
ENCFF734HPE.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 102.3 MB
ENCFF737SIA.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 32.4 MB
ENCFF739GZL.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.8 MB
ENCFF741AKF.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF748SUV.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 3.2 MB
ENCFF753QQZ.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 53.2 MB
ENCFF756PGI.bam bam (alignments); assembly: hg19; genome annotation: V19 2.2 GB
ENCFF759KVY.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 53.3 MB
ENCFF781IWP.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 101.2 MB
ENCFF781ZBF.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 94.0 MB
ENCFF785VDN.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.9 MB
ENCFF791ITH.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF807USW.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF823NSP.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.7 GB
ENCFF829BIA.bam bam (alignments); assembly: hg19; genome annotation: V19 3.7 GB
ENCFF832DNM.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 5.6 MB
ENCFF832EPQ.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF837KHY.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 53.7 MB
ENCFF846MDI.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 57.9 MB
ENCFF865UYK.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 53.1 MB
ENCFF876OKH.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 88.1 MB
ENCFF882UAZ.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 91.4 MB
ENCFF915HBG.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 103.2 MB
ENCFF974DLJ.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 100.6 MB
ENCFF982CDS.bam bam (alignments); assembly: GRCh38; genome annotation: V29 5.7 GB
ENCFF983DWI.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 52.4 MB
ENCFF984ELT.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF989GPQ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 93.6 MB
ENCFF994WLC.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.4 GB
ENCSR661HEL ENCSR · via encode_api

Control shRNA against no target in K562 cells followed by RNA-seq. (NT_BGKLV19-B)

Homo sapiens

84 data files
FileTypeSize
ENCFF006NLA.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF015SRT.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 63.9 MB
ENCFF022YYD.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 63.1 MB
ENCFF028SSX.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 79.3 MB
ENCFF078CHU.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 63.7 MB
ENCFF114NYX.bam bam (alignments); assembly: GRCh38; genome annotation: V29 3.8 GB
ENCFF124BQH.bam bam (alignments); assembly: GRCh38; genome annotation: V24 2.9 GB
ENCFF137HPM.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF146GUT.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 59.6 MB
ENCFF146WBD.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF150CJJ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 68.8 MB
ENCFF156YOZ.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 4.8 GB
ENCFF211PIM.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 71.1 MB
ENCFF224TRL.fastq fastq (reads) 1.9 GB
ENCFF255FBH.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 61.1 MB
ENCFF269IZJ.bam bam (alignments); assembly: hg19; genome annotation: V19 3.6 GB
ENCFF270QFX.bam bam (alignments); assembly: GRCh38; genome annotation: V29 2.9 GB
ENCFF270ZNJ.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 70.8 MB
ENCFF276RDY.fastq fastq (reads) 1.5 GB
ENCFF303GPK.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 65.5 MB
ENCFF308ADK.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF311TMC.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.8 GB
ENCFF339JYH.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 3.7 GB
ENCFF354SMM.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 65.5 MB
ENCFF360OFU.bam bam (alignments); assembly: hg19; genome annotation: V19 2.8 GB
ENCFF362TIW.bam bam (alignments); assembly: hg19; genome annotation: V19 3.1 GB
ENCFF363RVG.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 58.6 MB
ENCFF367CTQ.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 82.0 MB
ENCFF383NGY.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.3 MB
ENCFF394SDP.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 81.0 MB
ENCFF401SSB.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 72.7 MB
ENCFF419CDX.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 3.2 GB
ENCFF444CIC.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 64.3 MB
ENCFF454RKS.fastq fastq (reads) 2.0 GB
ENCFF463SYK.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 74.4 MB
ENCFF469QQQ.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.8 MB
ENCFF472PCY.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 67.4 MB
ENCFF509XCU.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 58.3 MB
ENCFF510PCE.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 72.8 MB
ENCFF514HPI.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 60.0 MB
ENCFF533LZD.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 55.0 MB
ENCFF539BFE.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 70.9 MB
ENCFF539FEL.fastq fastq (reads) 1.5 GB
ENCFF585PQS.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 56.5 MB
ENCFF586CKC.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF586IHD.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 71.9 MB
ENCFF595RFT.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 71.1 MB
ENCFF597RBB.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 63.6 MB
ENCFF602ACP.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 69.6 MB
ENCFF605ZSS.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF618ORF.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 65.9 MB
ENCFF649HUI.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 71.1 MB
ENCFF655QPU.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 71.6 MB
ENCFF674CZM.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 80.2 MB
ENCFF682PDE.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 62.5 MB
ENCFF699QUY.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 71.9 MB
ENCFF708VXO.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 61.5 MB
ENCFF713PEV.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF722WGP.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 61.6 MB
ENCFF724MLV.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF724YBQ.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 67.0 MB
ENCFF742XEQ.bam bam (alignments); assembly: hg19; genome annotation: V19 2.4 GB
ENCFF746UQW.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 4.3 GB
ENCFF749JML.bam bam (alignments); assembly: hg19; genome annotation: V19 2.4 GB
ENCFF750EVE.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.2 MB
ENCFF772GWB.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 81.0 MB
ENCFF783UYI.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 72.2 MB
ENCFF784MCE.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 81.9 MB
ENCFF791VMK.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 64.4 MB
ENCFF794JGQ.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 73.1 MB
ENCFF806WMN.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF820OVC.bam bam (alignments); assembly: GRCh38; genome annotation: V24 2.4 GB
ENCFF822KTN.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.1 GB
ENCFF833RZD.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 3.3 GB
ENCFF841MME.bam bam (alignments); assembly: hg19; genome annotation: V19 3.1 GB
ENCFF847CPB.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 70.1 MB
ENCFF901KZQ.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 63.0 MB
ENCFF901XUH.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 69.4 MB
ENCFF911LMC.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 70.0 MB
ENCFF912ATD.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF915BYH.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 73.1 MB
ENCFF927FWX.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 4.3 GB
ENCFF944CDM.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 60.1 MB
ENCFF982PUC.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCSR077BPR ENCSR · via encode_api

RNA-seq on K562 cells treated with an shRNA knockdown against ESF1. (ESF1_BGKLV29)

Homo sapiens

92 data files
FileTypeSize
ENCFF057TEL.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 71.6 MB
ENCFF072XPW.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 113.4 MB
ENCFF074MFZ.bam bam (alignments); assembly: hg19; genome annotation: V19 4.9 GB
ENCFF075SWH.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 66.9 MB
ENCFF085YQZ.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 80.6 MB
ENCFF087LXM.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 80.2 MB
ENCFF097QPQ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 81.8 MB
ENCFF101QYN.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF108UUK.fastq fastq (reads) 4.2 GB
ENCFF113FKX.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 87.6 MB
ENCFF132MYH.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 99.1 MB
ENCFF177FBI.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 114.5 MB
ENCFF245WLX.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 113.6 MB
ENCFF253LEU.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 91.9 MB
ENCFF265WZZ.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF272CAA.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.5 MB
ENCFF282IEB.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 99.3 MB
ENCFF285ALH.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 70.5 MB
ENCFF299SXL.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 90.7 MB
ENCFF311RWF.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 114.6 MB
ENCFF324SIN.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 9.0 GB
ENCFF324TSF.fastq fastq (reads) 3.1 GB
ENCFF328HGT.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 95.6 MB
ENCFF329SRB.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 112.4 MB
ENCFF335IVM.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.8 MB
ENCFF347HVR.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 80.1 MB
ENCFF350VIT.bam bam (alignments); assembly: hg19; genome annotation: V19 5.8 GB
ENCFF371ESM.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 101.1 MB
ENCFF373NQL.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 90.6 MB
ENCFF375BOO.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 97.5 MB
ENCFF375UST.bam bam (alignments); assembly: hg19; genome annotation: V19 7.8 GB
ENCFF396IGU.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 93.6 MB
ENCFF406QKL.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 92.2 MB
ENCFF417JZE.fastq fastq (reads) 3.1 GB
ENCFF417NDZ.bam bam (alignments); assembly: GRCh38; genome annotation: V24 6.6 GB
ENCFF419DWP.bam bam (alignments); assembly: hg19; genome annotation: V19 6.6 GB
ENCFF424VXO.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 71.8 MB
ENCFF439GAH.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF461AAT.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF480SFD.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 70.0 MB
ENCFF480XUZ.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 4.5 MB
ENCFF483IBN.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 68.6 MB
ENCFF483YWH.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.9 MB
ENCFF488OEW.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 74.4 MB
ENCFF490OEJ.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 76.4 MB
ENCFF492MOH.bam bam (alignments); assembly: GRCh38; genome annotation: V29 8.0 GB
ENCFF503FUN.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 85.7 MB
ENCFF504JUH.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.3 MB
ENCFF512PZG.bam bam (alignments); assembly: hg19; genome annotation: V19 6.6 GB
ENCFF518SXX.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 5.8 GB
ENCFF522HAI.fastq fastq (reads) 4.2 GB
ENCFF527GKO.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 89.2 MB
ENCFF534KHW.bam bam (alignments); assembly: GRCh38; genome annotation: V29 5.9 GB
ENCFF571HNE.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 113.6 MB
ENCFF583BHM.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF585QDZ.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.8 MB
ENCFF630PPC.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 82.1 MB
ENCFF643KZU.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 78.3 MB
ENCFF646GGA.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 15.5 MB
ENCFF647IUR.bam bam (alignments); assembly: GRCh38; genome annotation: V24 8.0 GB
ENCFF670FIJ.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.0 MB
ENCFF671ADS.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 88.8 MB
ENCFF677DOQ.bam bam (alignments); assembly: GRCh38; genome annotation: V24 5.0 GB
ENCFF686APL.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF707KAX.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 8.0 GB
ENCFF716DFS.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 81.6 MB
ENCFF722DTV.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF771UEX.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.4 MB
ENCFF774OIG.bam bam (alignments); assembly: hg19; genome annotation: V19 4.9 GB
ENCFF786TJS.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 101.1 MB
ENCFF802ITZ.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 98.8 MB
ENCFF802YEZ.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 92.7 MB
ENCFF815OTI.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 99.4 MB
ENCFF833SJZ.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 3.8 MB
ENCFF838WQS.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 6.5 GB
ENCFF839EZC.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 5.8 GB
ENCFF840KOB.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 75.7 MB
ENCFF846DWZ.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 5.5 MB
ENCFF854ZLP.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 8.0 GB
ENCFF896MIM.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 94.7 MB
ENCFF930GGS.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 91.5 MB
ENCFF930UNF.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 4.3 MB
ENCFF943SZM.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 83.7 MB
ENCFF948QPU.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 79.6 MB
ENCFF953NCE.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 92.7 MB
ENCFF958LHJ.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 73.1 MB
ENCFF958YFK.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.5 MB
ENCFF974EEA.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF986KXK.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 101.1 MB
ENCFF995EQN.bam bam (alignments); assembly: GRCh38; genome annotation: V24 5.9 GB
ENCFF996EEK.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 91.9 MB
ENCFF999NTC.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.5 MB
ENCSR838SMC ENCSR · via encode_api

shRNA knockdown against RPS5 in HepG2 cells followed by RNA-seq. (RPS5_BGHLV18)

Homo sapiens

92 data files
FileTypeSize
ENCFF018QFE.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 4.3 MB
ENCFF029SSW.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 81.5 MB
ENCFF045WYW.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 7.0 GB
ENCFF058YGW.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 81.6 MB
ENCFF086ELJ.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 92.8 MB
ENCFF111DXE.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 3.4 MB
ENCFF138PPF.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 91.1 MB
ENCFF146KDH.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 81.4 MB
ENCFF158YQE.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 68.0 MB
ENCFF159DWY.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 72.7 MB
ENCFF173WUB.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 75.5 MB
ENCFF174OML.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 81.7 MB
ENCFF193XWX.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 74.0 MB
ENCFF196PFP.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 80.6 MB
ENCFF232HRT.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.7 MB
ENCFF249VUB.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 5.4 GB
ENCFF254VSB.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 4.0 MB
ENCFF254YNA.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 85.0 MB
ENCFF261BLX.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 80.0 MB
ENCFF266YDO.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 73.5 MB
ENCFF273SIA.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 78.0 MB
ENCFF274QSX.fastq fastq (reads) 3.1 GB
ENCFF282AJC.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.4 MB
ENCFF292HGU.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF300MKG.fastq fastq (reads) 2.3 GB
ENCFF305QHG.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF317QJH.bam bam (alignments); assembly: hg19; genome annotation: V19 4.6 GB
ENCFF321UEF.bam bam (alignments); assembly: hg19; genome annotation: V19 3.6 GB
ENCFF334HPJ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 70.0 MB
ENCFF336JRB.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.9 MB
ENCFF344IZD.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.9 MB
ENCFF351YEK.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 83.0 MB
ENCFF356SUA.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 84.2 MB
ENCFF361EGP.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF364MAE.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.7 GB
ENCFF374ZTO.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF379IGA.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 72.1 MB
ENCFF403DGQ.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 84.0 MB
ENCFF413NWX.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 73.1 MB
ENCFF438JSV.bam bam (alignments); assembly: hg19; genome annotation: V19 4.6 GB
ENCFF451TSI.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 75.1 MB
ENCFF455IHZ.bam bam (alignments); assembly: hg19; genome annotation: V19 5.4 GB
ENCFF466STA.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF500QPB.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.5 MB
ENCFF510AVR.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 83.1 MB
ENCFF514LJK.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 90.9 MB
ENCFF515QTK.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 83.4 MB
ENCFF521SEH.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.4 MB
ENCFF531QEJ.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 15.6 MB
ENCFF534VDO.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.3 GB
ENCFF535IPN.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 74.8 MB
ENCFF548HWS.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.6 GB
ENCFF560ABM.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 82.6 MB
ENCFF571HEM.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 82.4 MB
ENCFF580IPX.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF583EQH.bam bam (alignments); assembly: hg19; genome annotation: V19 4.2 GB
ENCFF587KMQ.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 77.9 MB
ENCFF591XZR.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 92.9 MB
ENCFF594BKC.bam bam (alignments); assembly: hg19; genome annotation: V19 3.6 GB
ENCFF602LNB.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 75.5 MB
ENCFF651SRN.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 78.3 MB
ENCFF667CWF.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 6.1 GB
ENCFF680KGL.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF682AKU.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 81.9 MB
ENCFF683KYL.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 72.4 MB
ENCFF689TMJ.bam bam (alignments); assembly: GRCh38; genome annotation: V29 5.6 GB
ENCFF696UYJ.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF698WFR.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 83.0 MB
ENCFF716AFF.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 6.9 GB
ENCFF718ZAX.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 75.0 MB
ENCFF727TRJ.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 5.4 GB
ENCFF738FJC.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 84.1 MB
ENCFF752WBY.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 91.1 MB
ENCFF761YAC.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF763GNB.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 74.0 MB
ENCFF775BOX.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 76.6 MB
ENCFF790HIY.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 7.8 GB
ENCFF798NIQ.fastq fastq (reads) 3.0 GB
ENCFF802OOZ.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 75.4 MB
ENCFF803HOR.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF810PHY.bam bam (alignments); assembly: GRCh38; genome annotation: V24 5.6 GB
ENCFF811RXT.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 92.5 MB
ENCFF862LXD.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 70.1 MB
ENCFF879XMW.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 81.5 MB
ENCFF888IPH.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF910YWR.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 69.4 MB
ENCFF915IUK.fastq fastq (reads) 2.4 GB
ENCFF926IDR.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 71.2 MB
ENCFF927XMK.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 84.8 MB
ENCFF931IQR.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 82.7 MB
ENCFF943SAL.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 5.5 MB
ENCFF966DXH.bam bam (alignments); assembly: GRCh38; genome annotation: V29 4.3 GB
ENCSR712CSN ENCSR · via encode_api

RNA-seq on K562 cells treated with an shRNA knockdown against EIF4G1. (EIF4G1_BGKLV24)

Homo sapiens

92 data files
FileTypeSize
ENCFF009VAX.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 5.5 MB
ENCFF010FVP.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF014DFI.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 3.1 MB
ENCFF017KUD.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 4.6 GB
ENCFF019MNI.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 66.3 MB
ENCFF052GNT.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 71.4 MB
ENCFF093ZND.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 71.2 MB
ENCFF097LQL.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 60.1 MB
ENCFF104SOX.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 72.0 MB
ENCFF109GGY.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 72.8 MB
ENCFF111USR.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 65.3 MB
ENCFF121NVZ.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 65.9 MB
ENCFF127HCV.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF132ENB.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 65.1 MB
ENCFF157IFR.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 64.5 MB
ENCFF167YIK.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 60.1 MB
ENCFF171TTJ.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.3 GB
ENCFF173IPH.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 4.1 GB
ENCFF180OAP.bam bam (alignments); assembly: hg19; genome annotation: V19 2.9 GB
ENCFF218CKL.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 71.9 MB
ENCFF220QHT.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 63.9 MB
ENCFF226SUI.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 61.6 MB
ENCFF247VVE.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 61.8 MB
ENCFF271OIV.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 59.7 MB
ENCFF280EZU.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 58.2 MB
ENCFF300PDX.fastq fastq (reads) 1.7 GB
ENCFF305AEC.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 60.6 MB
ENCFF310HXH.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 57.4 MB
ENCFF328HFM.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 64.1 MB
ENCFF328ILX.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF350XOW.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 64.5 MB
ENCFF354PTB.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.7 MB
ENCFF367NYE.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 61.5 MB
ENCFF388EIO.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 63.2 MB
ENCFF392ENF.fastq fastq (reads) 1.8 GB
ENCFF411VYW.bam bam (alignments); assembly: GRCh38; genome annotation: V24 2.7 GB
ENCFF413YNU.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 72.0 MB
ENCFF425NKK.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 56.7 MB
ENCFF426TCB.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF446DSH.fastq fastq (reads) 2.0 GB
ENCFF451WIR.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.5 GB
ENCFF465ACU.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 64.8 MB
ENCFF472CDA.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 61.9 MB
ENCFF473KWA.bam bam (alignments); assembly: GRCh38; genome annotation: V29 3.3 GB
ENCFF479VAY.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 3.8 GB
ENCFF481VRD.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 69.6 MB
ENCFF523DDR.bam bam (alignments); assembly: hg19; genome annotation: V19 2.7 GB
ENCFF533NEA.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 12.9 MB
ENCFF537EQV.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 71.3 MB
ENCFF542CKA.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF544DSO.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 4.1 GB
ENCFF556YMA.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 61.5 MB
ENCFF567OWB.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.9 MB
ENCFF569JBM.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 63.6 MB
ENCFF575LJM.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 62.5 MB
ENCFF576JMA.bam bam (alignments); assembly: hg19; genome annotation: V19 2.7 GB
ENCFF577ZUA.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF586KAI.bam bam (alignments); assembly: GRCh38; genome annotation: V24 2.9 GB
ENCFF620KRD.bam bam (alignments); assembly: GRCh38; genome annotation: V29 3.5 GB
ENCFF655CAA.bam bam (alignments); assembly: hg19; genome annotation: V19 2.9 GB
ENCFF657XCE.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF705EZQ.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 72.0 MB
ENCFF706RKX.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.8 MB
ENCFF713RIW.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF716GVM.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 4.3 GB
ENCFF721YGD.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 72.2 MB
ENCFF742HVI.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 4.0 MB
ENCFF751MWU.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 67.1 MB
ENCFF760MCT.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 63.1 MB
ENCFF773WQZ.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF781OZY.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 62.9 MB
ENCFF785HWV.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 64.4 MB
ENCFF843VTC.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 55.8 MB
ENCFF848IYQ.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 65.1 MB
ENCFF859STP.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 3.8 GB
ENCFF862RGW.fastq fastq (reads) 1.8 GB
ENCFF870UVK.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.3 MB
ENCFF900AVX.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 3.3 MB
ENCFF902UDT.bam bam (alignments); assembly: hg19; genome annotation: V19 3.2 GB
ENCFF904AWA.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 63.0 MB
ENCFF911ZQU.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 64.6 MB
ENCFF913SGQ.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF914CEG.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.3 MB
ENCFF923IYZ.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF940RPV.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 60.5 MB
ENCFF951RQF.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF959AWZ.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 62.7 MB
ENCFF974HAP.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 65.3 MB
ENCFF977UEX.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 72.7 MB
ENCFF987XQH.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 61.0 MB
ENCFF989FXI.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 70.4 MB
ENCFF990PXY.bam bam (alignments); assembly: hg19; genome annotation: V19 3.4 GB
ENCSR995RPB ENCSR · via encode_api

shRNA knockdown against SUPV3L1 in HepG2 cells followed by RNA-seq. (SUPV3L1_BGHLV17)

Homo sapiens

92 data files
FileTypeSize
ENCFF012QGJ.bam bam (alignments); assembly: GRCh38; genome annotation: V29 5.3 GB
ENCFF015HPP.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 90.4 MB
ENCFF029GUI.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 82.2 MB
ENCFF030UBV.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF044WAX.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 80.3 MB
ENCFF051CWK.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 76.9 MB
ENCFF064IYP.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 97.7 MB
ENCFF072BGK.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 6.4 GB
ENCFF078QOX.bam bam (alignments); assembly: hg19; genome annotation: V19 5.8 GB
ENCFF082CNV.bam bam (alignments); assembly: hg19; genome annotation: V19 6.8 GB
ENCFF083SAG.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 89.1 MB
ENCFF103ICB.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF105VXB.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 98.0 MB
ENCFF117PAK.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 90.2 MB
ENCFF118KLX.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 95.7 MB
ENCFF118PYP.fastq fastq (reads) 3.9 GB
ENCFF132YAV.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF148QFK.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 107.1 MB
ENCFF161DPV.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 80.2 MB
ENCFF172IUK.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 74.9 MB
ENCFF192VFW.bam bam (alignments); assembly: hg19; genome annotation: V19 4.4 GB
ENCFF197UVH.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 80.8 MB
ENCFF200JIY.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 82.2 MB
ENCFF205MAY.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 97.0 MB
ENCFF205XEJ.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 90.4 MB
ENCFF226VZL.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.0 MB
ENCFF235YCC.fastq fastq (reads) 3.7 GB
ENCFF239DED.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 95.6 MB
ENCFF258NGR.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 3.0 MB
ENCFF273BKO.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF288BKN.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 107.0 MB
ENCFF299WGP.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 92.1 MB
ENCFF312MTW.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 87.5 MB
ENCFF313DFU.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 3.6 MB
ENCFF339ZOK.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 5.7 MB
ENCFF342YHK.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF356ENW.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 82.2 MB
ENCFF366ICU.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.5 MB
ENCFF393IVU.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 98.8 MB
ENCFF417LQZ.fastq fastq (reads) 2.9 GB
ENCFF465KZZ.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 89.2 MB
ENCFF473YSD.bam bam (alignments); assembly: GRCh38; genome annotation: V24 5.9 GB
ENCFF503TWC.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 9.4 GB
ENCFF516RMD.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 4.3 MB
ENCFF519WIE.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 82.7 MB
ENCFF527HVC.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 76.6 MB
ENCFF554KXS.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 81.1 MB
ENCFF556GXS.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.8 MB
ENCFF571IQW.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 7.1 GB
ENCFF587XHR.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 80.2 MB
ENCFF595YSP.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 8.4 GB
ENCFF596TAC.bam bam (alignments); assembly: hg19; genome annotation: V19 4.4 GB
ENCFF602MEX.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 105.4 MB
ENCFF606GVH.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 75.0 MB
ENCFF614WRS.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 92.5 MB
ENCFF624KNV.fastq fastq (reads) 2.8 GB
ENCFF624NBF.bam bam (alignments); assembly: GRCh38; genome annotation: V24 5.3 GB
ENCFF633VXK.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 107.1 MB
ENCFF646TQB.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 96.0 MB
ENCFF649KPN.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 95.2 MB
ENCFF682FOB.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 6.3 GB
ENCFF684PVM.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF700VYO.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 77.6 MB
ENCFF719ZER.bam bam (alignments); assembly: hg19; genome annotation: V19 5.8 GB
ENCFF734OAK.bam bam (alignments); assembly: hg19; genome annotation: V19 5.2 GB
ENCFF749PFW.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF757UIT.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 8.3 GB
ENCFF760IOG.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 4.5 MB
ENCFF763UKF.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 108.8 MB
ENCFF775BFI.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 16.1 MB
ENCFF791ZMT.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.4 MB
ENCFF793STP.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 72.9 MB
ENCFF815NAE.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF816UAZ.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 98.0 MB
ENCFF827EGH.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.5 MB
ENCFF832QSD.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 74.9 MB
ENCFF832XIT.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 90.0 MB
ENCFF838UMT.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 98.5 MB
ENCFF843KJF.bam bam (alignments); assembly: GRCh38; genome annotation: V24 7.0 GB
ENCFF858TEI.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 96.1 MB
ENCFF862YMX.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 108.7 MB
ENCFF878MYE.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF883AXR.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 89.7 MB
ENCFF893FHR.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF932WMK.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 89.1 MB
ENCFF945KZX.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF949VAI.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 87.9 MB
ENCFF950KFK.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 93.4 MB
ENCFF963IEY.bam bam (alignments); assembly: GRCh38; genome annotation: V29 7.0 GB
ENCFF965CHB.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 79.1 MB
ENCFF972UMU.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 79.6 MB
ENCFF990SFW.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.5 GB
ENCSR610VTA ENCSR · via encode_api

RNA-seq on HepG2 cells treated with an shRNA knockdown against ABCF1. (ABCF1_BGHLV30)

Homo sapiens

92 data files
FileTypeSize
ENCFF012YXW.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 79.1 MB
ENCFF015TIY.bam bam (alignments); assembly: hg19; genome annotation: V19 12.0 GB
ENCFF041OTA.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 137.2 MB
ENCFF067AQF.fastq fastq (reads) 7.0 GB
ENCFF073XUZ.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 149.0 MB
ENCFF091WVW.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 75.9 MB
ENCFF092CIU.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 150.0 MB
ENCFF100MYC.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF104PZM.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.4 MB
ENCFF135AQK.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF192ZJM.bam bam (alignments); assembly: GRCh38; genome annotation: V29 5.4 GB
ENCFF193LPM.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 77.9 MB
ENCFF206WVS.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 134.9 MB
ENCFF217OUA.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.5 GB
ENCFF223QMB.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF229LYX.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 137.3 MB
ENCFF252YGS.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.6 MB
ENCFF256YDS.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 76.1 MB
ENCFF261BSY.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 126.3 MB
ENCFF288ZFC.bam bam (alignments); assembly: GRCh38; genome annotation: V24 5.4 GB
ENCFF291DXR.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 4.8 MB
ENCFF310FWL.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 125.1 MB
ENCFF327OLF.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 85.7 MB
ENCFF330WOR.bam bam (alignments); assembly: GRCh38; genome annotation: V24 12.2 GB
ENCFF337AXV.fastq fastq (reads) 3.0 GB
ENCFF339WWT.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 150.0 MB
ENCFF344RUZ.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.9 MB
ENCFF351GWQ.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 70.3 MB
ENCFF375JLH.bam bam (alignments); assembly: hg19; genome annotation: V19 5.2 GB
ENCFF390FTP.fastq fastq (reads) 8.3 GB
ENCFF402GYQ.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 85.7 MB
ENCFF403GOX.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.7 MB
ENCFF450WGO.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 73.7 MB
ENCFF452UDE.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.0 MB
ENCFF458NYA.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 16.1 MB
ENCFF461QQO.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 127.3 MB
ENCFF464JGR.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 123.1 MB
ENCFF472ZON.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.3 MB
ENCFF488TSC.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 151.9 MB
ENCFF490RIU.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.5 MB
ENCFF503WJW.bam bam (alignments); assembly: hg19; genome annotation: V19 12.0 GB
ENCFF512RCL.bam bam (alignments); assembly: hg19; genome annotation: V19 14.4 GB
ENCFF516XZO.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 4.2 MB
ENCFF525FFC.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 66.7 MB
ENCFF526DLG.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 84.6 MB
ENCFF532GAQ.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 138.2 MB
ENCFF537UKY.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 86.2 MB
ENCFF543DXO.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 87.6 MB
ENCFF544WYU.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 133.0 MB
ENCFF546TGP.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.5 MB
ENCFF564FTW.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 78.4 MB
ENCFF573TNC.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.9 MB
ENCFF590KQK.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 153.4 MB
ENCFF595HUU.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 76.4 MB
ENCFF596YKH.bam bam (alignments); assembly: hg19; genome annotation: V19 4.4 GB
ENCFF610FLF.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 6.4 GB
ENCFF628ZWT.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 134.0 MB
ENCFF629NGY.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 71.4 MB
ENCFF629SPS.bam bam (alignments); assembly: GRCh38; genome annotation: V29 14.8 GB
ENCFF640ULV.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 4.3 MB
ENCFF673WYH.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 78.7 MB
ENCFF681WKG.fastq fastq (reads) 3.0 GB
ENCFF693PBY.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 75.7 MB
ENCFF696QXO.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF710RXU.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 7.3 GB
ENCFF724GZU.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.2 MB
ENCFF734YIN.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 5.6 MB
ENCFF742CBR.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 87.6 MB
ENCFF748UWN.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 74.1 MB
ENCFF754MDR.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 122.4 MB
ENCFF765PVT.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 129.3 MB
ENCFF766LME.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 133.2 MB
ENCFF766WZK.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 6.5 GB
ENCFF771GMC.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 18.3 GB
ENCFF778WAX.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 132.9 MB
ENCFF788EIM.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF798TCA.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 138.3 MB
ENCFF815JWF.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 68.3 MB
ENCFF846UXA.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 18.2 GB
ENCFF869PWP.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 136.6 MB
ENCFF875ZVH.bam bam (alignments); assembly: GRCh38; genome annotation: V24 14.8 GB
ENCFF881KAH.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 25.0 MB
ENCFF924VOU.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 77.5 MB
ENCFF927FVG.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 20.7 GB
ENCFF942FUE.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 68.9 MB
ENCFF945FSU.bam bam (alignments); assembly: hg19; genome annotation: V19 4.4 GB
ENCFF957GYH.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 75.5 MB
ENCFF966APW.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 136.1 MB
ENCFF969BCN.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.5 MB
ENCFF983NMV.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 132.9 MB
ENCFF988XBZ.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 153.4 MB
ENCFF996PDQ.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 77.2 MB
ENCSR133QEA ENCSR · via encode_api

eCLIP experiment on K562 against SF3B1

Homo sapiens

34 data files
FileTypeSize
ENCFF007CDS.bigWig bigWig (minus strand signal of unique reads) 1.4 MB
ENCFF007PYZ.bigBed bigBed (peaks) 1.3 MB
ENCFF067EOQ.bed bed (peaks) 279.0 KB
ENCFF122SLD.bigWig bigWig (minus strand signal of unique reads) 1.4 MB
ENCFF143JZZ.bed bed (peaks) 574.4 KB
ENCFF151JUN.fastq fastq (reads) 707.0 MB
ENCFF177PRH.bam bam (alignments) 41.3 MB
ENCFF190SDC.bigBed bigBed (peaks) 1.3 MB
ENCFF197LZZ.bigWig bigWig (plus strand signal of unique reads) 1.5 MB
ENCFF210VRR.bed bed (peaks) 675.9 KB
ENCFF234UQG.bigWig bigWig (plus strand signal of unique reads) 1.5 MB
ENCFF260NCQ.bed bed (peaks) 348.3 KB
ENCFF322GPD.bed bed (peaks) 840.0 B
ENCFF351MRH.fastq fastq (reads) 698.6 MB
ENCFF351XLV.bigBed bigBed (peaks) 1.2 MB
ENCFF415ZYA.bigBed bigBed (peaks) 1.3 MB
ENCFF421JRL.bed bed (peaks) 663.2 KB
ENCFF430PGG.bigWig bigWig (plus strand signal of unique reads) 2.6 MB
ENCFF498GFT.bed bed (peaks) 656.6 KB
ENCFF504MYO.bigBed bigBed (peaks) 652.5 KB
ENCFF522WHU.bigWig bigWig (minus strand signal of unique reads) 2.5 MB
ENCFF529WBV.bigBed bigBed (peaks) 1.2 MB
ENCFF563VCX.bigBed bigBed (peaks) 958.7 KB
ENCFF564ARY.bam bam (alignments) 39.0 MB
ENCFF585JKL.fastq fastq (reads) 672.0 MB
ENCFF724XML.bed bed (peaks) 630.6 KB
ENCFF747RLR.bigBed bigBed (peaks) 547.3 KB
ENCFF763CZN.fastq fastq (reads) 736.7 MB
ENCFF766KGY.bam bam (alignments) 29.7 MB
ENCFF773AKE.bed bed (peaks) 632.2 KB
ENCFF835USP.bigWig bigWig (minus strand signal of unique reads) 2.4 MB
ENCFF887ARJ.bed bed (peaks) 1016.0 B
ENCFF928WSR.bigWig bigWig (plus strand signal of unique reads) 2.5 MB
ENCFF959GNA.bam bam (alignments) 28.6 MB
ENCSR584JRB ENCSR · via encode_api

RNA-seq on HepG2 cells treated with an shRNA knockdown against NUFIP2. (NUFIP2_BGHLV26)

Homo sapiens

92 data files
FileTypeSize
ENCFF010SBT.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 78.7 MB
ENCFF016FEG.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 84.1 MB
ENCFF018VNB.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 3.0 MB
ENCFF021QUX.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.7 GB
ENCFF023YLC.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 79.0 MB
ENCFF036KQS.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.3 MB
ENCFF039AHJ.fastq fastq (reads) 3.3 GB
ENCFF065OBW.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.4 MB
ENCFF080NLA.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 80.4 MB
ENCFF088VJV.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.9 MB
ENCFF093HTN.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 85.3 MB
ENCFF102UOY.bam bam (alignments); assembly: hg19; genome annotation: V19 4.7 GB
ENCFF123QAE.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 74.0 MB
ENCFF124BOI.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 76.0 MB
ENCFF124LAJ.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 74.1 MB
ENCFF125ZEO.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 14.8 MB
ENCFF127MEB.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.8 MB
ENCFF152DFW.bam bam (alignments); assembly: hg19; genome annotation: V19 5.4 GB
ENCFF175GHV.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 76.1 MB
ENCFF175OMO.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 71.6 MB
ENCFF177CAQ.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 68.8 MB
ENCFF178OAB.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 84.6 MB
ENCFF180AEA.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 88.1 MB
ENCFF203APD.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF222MFA.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF243TFB.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 72.3 MB
ENCFF250AEV.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 77.8 MB
ENCFF264WNW.fastq fastq (reads) 3.4 GB
ENCFF301QKR.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 86.3 MB
ENCFF301WWZ.bam bam (alignments); assembly: hg19; genome annotation: V19 4.5 GB
ENCFF306PZW.bam bam (alignments); assembly: hg19; genome annotation: V19 5.6 GB
ENCFF312UWC.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 86.5 MB
ENCFF334QCK.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 79.9 MB
ENCFF340NYQ.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.8 MB
ENCFF359PNL.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF364TBD.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 77.7 MB
ENCFF365WCY.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 73.7 MB
ENCFF396RUH.bam bam (alignments); assembly: GRCh38; genome annotation: V24 5.6 GB
ENCFF409XWT.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 25.0 MB
ENCFF410DNJ.fastq fastq (reads) 3.3 GB
ENCFF413SED.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 77.4 MB
ENCFF417XZS.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.4 MB
ENCFF424FAT.bam bam (alignments); assembly: GRCh38; genome annotation: V29 5.7 GB
ENCFF433XHM.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 79.0 MB
ENCFF438VQW.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 7.1 GB
ENCFF464XNK.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.5 MB
ENCFF471TRV.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 75.0 MB
ENCFF521DDT.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 7.5 GB
ENCFF545TQV.bam bam (alignments); assembly: GRCh38; genome annotation: V29 5.6 GB
ENCFF565FFD.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 71.8 MB
ENCFF573SAQ.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 86.8 MB
ENCFF583UIU.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 86.2 MB
ENCFF587ZRN.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.9 MB
ENCFF589LOQ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 78.3 MB
ENCFF597LGS.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 85.7 MB
ENCFF599NUJ.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 74.3 MB
ENCFF600GLR.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 86.4 MB
ENCFF601GKS.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 76.8 MB
ENCFF603MYZ.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 72.2 MB
ENCFF606FNB.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.6 GB
ENCFF610SQF.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 77.0 MB
ENCFF624DWK.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 77.9 MB
ENCFF626NSF.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 84.6 MB
ENCFF650WCE.bam bam (alignments); assembly: hg19; genome annotation: V19 4.7 GB
ENCFF654UQI.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 8.5 GB
ENCFF680FBG.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.9 MB
ENCFF686CPY.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.3 MB
ENCFF696OMP.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.5 MB
ENCFF700NVY.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 5.6 MB
ENCFF706DUE.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 76.4 MB
ENCFF732UYF.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 70.9 MB
ENCFF734OAN.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 75.6 MB
ENCFF742VSP.fastq fastq (reads) 3.4 GB
ENCFF749KFO.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 74.4 MB
ENCFF755ZCW.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 69.5 MB
ENCFF756HBI.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 79.2 MB
ENCFF759CMJ.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF760TPR.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 8.1 GB
ENCFF769XUT.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 7.5 GB
ENCFF776XSY.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 78.2 MB
ENCFF787VRP.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 7.1 GB
ENCFF796RRX.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 25.0 MB
ENCFF835DLX.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 76.9 MB
ENCFF844WCP.bam bam (alignments); assembly: hg19; genome annotation: V19 4.5 GB
ENCFF855EBT.bam bam (alignments); assembly: GRCh38; genome annotation: V24 5.7 GB
ENCFF906LRA.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 76.1 MB
ENCFF912DFW.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 71.8 MB
ENCFF927DCO.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 75.2 MB
ENCFF937UMX.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 88.1 MB
ENCFF971BQX.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 4.2 MB
ENCFF993XYC.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 76.9 MB
ENCFF999UKI.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 3.6 MB
ENCSR181RLB ENCSR · via encode_api

shRNA knockdown against EEF2 in K562 cells followed by RNA-seq. (EEF2_BGKLV19)

Homo sapiens

92 data files
FileTypeSize
ENCFF048IBN.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 66.8 MB
ENCFF060QPW.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 81.5 MB
ENCFF065OJQ.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 98.0 MB
ENCFF066MXD.bam bam (alignments); assembly: hg19; genome annotation: V19 4.5 GB
ENCFF073ODL.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF084TIH.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 77.0 MB
ENCFF091RRA.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 69.2 MB
ENCFF115HST.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 81.5 MB
ENCFF124YEN.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 85.7 MB
ENCFF155WAR.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 96.9 MB
ENCFF156YNJ.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF157ZEB.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 14.8 MB
ENCFF185XHP.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF222DQD.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 77.0 MB
ENCFF230UEX.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.9 MB
ENCFF264WTQ.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 5.5 MB
ENCFF268RHL.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 82.0 MB
ENCFF291DKJ.bam bam (alignments); assembly: GRCh38; genome annotation: V29 5.6 GB
ENCFF295SVZ.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 67.7 MB
ENCFF333ZWZ.bam bam (alignments); assembly: hg19; genome annotation: V19 4.6 GB
ENCFF345NVT.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF347FZA.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.5 MB
ENCFF364JCD.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 87.8 MB
ENCFF369OQI.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 4.3 GB
ENCFF396TVT.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 3.6 MB
ENCFF410TOT.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 4.8 GB
ENCFF415TRD.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 95.9 MB
ENCFF444LQA.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF446PSY.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 68.2 MB
ENCFF462RGF.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 87.3 MB
ENCFF494MDP.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 69.8 MB
ENCFF496YVY.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 98.0 MB
ENCFF507NQE.bam bam (alignments); assembly: hg19; genome annotation: V19 3.0 GB
ENCFF522SNH.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 61.1 MB
ENCFF532AXC.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 65.3 MB
ENCFF533ULV.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.9 MB
ENCFF535MID.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 88.4 MB
ENCFF547PGQ.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF560GBY.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 97.0 MB
ENCFF563HCH.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 69.3 MB
ENCFF568ELF.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 87.2 MB
ENCFF591HRW.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF598VNI.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 4.2 MB
ENCFF603UEH.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.0 GB
ENCFF613QDI.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.6 GB
ENCFF618PRH.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 6.6 GB
ENCFF626ANJ.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 69.0 MB
ENCFF632LMC.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 68.4 MB
ENCFF637GTO.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 85.2 MB
ENCFF642VSI.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF645EJH.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 86.4 MB
ENCFF647QUX.fastq fastq (reads) 2.9 GB
ENCFF651NJY.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 88.0 MB
ENCFF651QFZ.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 6.6 GB
ENCFF656MDJ.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 96.9 MB
ENCFF673TWY.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF693HAJ.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.6 GB
ENCFF697QOY.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 77.9 MB
ENCFF722EPU.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 75.6 MB
ENCFF722UMS.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF726OHY.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 4.1 MB
ENCFF744TOL.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 79.4 MB
ENCFF763GZO.fastq fastq (reads) 3.0 GB
ENCFF768OTT.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 83.1 MB
ENCFF779QPQ.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 86.2 MB
ENCFF796OER.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 66.0 MB
ENCFF802NDY.bam bam (alignments); assembly: GRCh38; genome annotation: V29 3.6 GB
ENCFF804JHU.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 4.2 GB
ENCFF805TZL.bam bam (alignments); assembly: hg19; genome annotation: V19 5.4 GB
ENCFF808PNY.fastq fastq (reads) 1.9 GB
ENCFF821TTY.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 89.7 MB
ENCFF825MOJ.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 87.5 MB
ENCFF830GUR.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 64.4 MB
ENCFF843UMF.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 76.4 MB
ENCFF845LWB.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 84.0 MB
ENCFF849AIT.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.7 MB
ENCFF862HNT.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 77.9 MB
ENCFF887SBE.bam bam (alignments); assembly: hg19; genome annotation: V19 3.5 GB
ENCFF888JVS.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 67.8 MB
ENCFF902QMU.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 70.1 MB
ENCFF903YUA.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.4 MB
ENCFF914GJX.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 62.8 MB
ENCFF923JKP.fastq fastq (reads) 1.8 GB
ENCFF947VQL.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF951AQX.bam bam (alignments); assembly: hg19; genome annotation: V19 3.0 GB
ENCFF961XEF.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 66.9 MB
ENCFF962WNH.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 88.2 MB
ENCFF964LWI.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.3 MB
ENCFF978PEN.bam bam (alignments); assembly: GRCh38; genome annotation: V24 5.6 GB
ENCFF979PMY.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 71.3 MB
ENCFF990OUX.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 64.0 MB
ENCFF992CGB.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 7.5 GB
ENCSR930IPS ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) input control experiment of TIA1

1 data file
FileTypeSize
ENCFF295WRQ.fastq fastq (reads) 422.8 MB
ENCSR866XLI ENCSR · via encode_api

RNA-seq on K562 cells treated with an shRNA knockdown against LARP4. (LARP4_BGKLV28)

Homo sapiens

92 data files
FileTypeSize
ENCFF005ZGV.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 16.6 MB
ENCFF017BUT.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 117.4 MB
ENCFF021JIW.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF048QJB.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 7.6 GB
ENCFF058KBR.fastq fastq (reads) 3.7 GB
ENCFF062JZD.fastq fastq (reads) 4.9 GB
ENCFF085EWR.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.4 MB
ENCFF097NFX.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 11.1 GB
ENCFF102COA.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 87.1 MB
ENCFF115AEO.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 4.2 MB
ENCFF121NNK.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 9.9 GB
ENCFF124YRE.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 89.4 MB
ENCFF126EDD.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 25.0 MB
ENCFF129ZBC.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.4 MB
ENCFF159LWN.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 79.6 MB
ENCFF163QBB.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 79.9 MB
ENCFF171XSY.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 88.0 MB
ENCFF172JGZ.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 92.4 MB
ENCFF180SCL.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 99.1 MB
ENCFF185OGI.bam bam (alignments); assembly: GRCh38; genome annotation: V24 6.8 GB
ENCFF188ZTG.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.5 MB
ENCFF227FZD.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 81.3 MB
ENCFF230VVB.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 3.7 MB
ENCFF233FAT.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF262ISG.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 101.5 MB
ENCFF270MZF.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.5 MB
ENCFF273GWA.fastq fastq (reads) 4.9 GB
ENCFF340WMH.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 25.0 MB
ENCFF364SNX.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 99.1 MB
ENCFF372BJK.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 89.1 MB
ENCFF372JZF.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 103.3 MB
ENCFF381MYN.bam bam (alignments); assembly: hg19; genome annotation: V19 7.4 GB
ENCFF393WYS.bam bam (alignments); assembly: hg19; genome annotation: V19 8.8 GB
ENCFF417LNR.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 8.6 GB
ENCFF418DJB.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 92.8 MB
ENCFF438LIG.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 5.6 MB
ENCFF443VUW.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 100.1 MB
ENCFF450JFU.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 118.6 MB
ENCFF452BKI.bam bam (alignments); assembly: GRCh38; genome annotation: V24 9.0 GB
ENCFF454ZMJ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 79.2 MB
ENCFF470LWJ.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 115.4 MB
ENCFF514VQT.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 117.3 MB
ENCFF516RXP.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 100.0 MB
ENCFF527KVT.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.9 MB
ENCFF544LNT.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 99.4 MB
ENCFF552HSC.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF559UZO.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 104.1 MB
ENCFF575NPD.bam bam (alignments); assembly: hg19; genome annotation: V19 7.4 GB
ENCFF575PKG.bam bam (alignments); assembly: hg19; genome annotation: V19 5.6 GB
ENCFF581LKL.bam bam (alignments); assembly: GRCh38; genome annotation: V29 9.0 GB
ENCFF586UQY.bam bam (alignments); assembly: hg19; genome annotation: V19 6.7 GB
ENCFF592TPZ.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF601BST.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 86.4 MB
ENCFF601CRA.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 102.0 MB
ENCFF609PMS.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 94.6 MB
ENCFF611LWV.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 103.6 MB
ENCFF621CZY.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 101.6 MB
ENCFF685OEL.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 99.1 MB
ENCFF691NQB.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.9 MB
ENCFF692SQD.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 118.6 MB
ENCFF699RRB.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 89.1 MB
ENCFF702APS.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 90.8 MB
ENCFF721JQX.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.4 MB
ENCFF732VQA.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.9 MB
ENCFF747KNP.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 116.8 MB
ENCFF748GCP.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 87.5 MB
ENCFF774LZU.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 100.0 MB
ENCFF775LJM.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 84.3 MB
ENCFF775TLB.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 88.2 MB
ENCFF777STB.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 86.3 MB
ENCFF781WMV.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 85.7 MB
ENCFF792KLT.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 93.1 MB
ENCFF810LGY.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 81.4 MB
ENCFF822BPQ.bam bam (alignments); assembly: GRCh38; genome annotation: V29 6.8 GB
ENCFF839THY.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 87.4 MB
ENCFF840DXP.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 7.5 GB
ENCFF847ZQV.bam bam (alignments); assembly: GRCh38; genome annotation: V24 5.6 GB
ENCFF859UDB.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 100.6 MB
ENCFF864ZCE.fastq fastq (reads) 3.7 GB
ENCFF866NVJ.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 9.8 GB
ENCFF883NJM.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 101.7 MB
ENCFF896EJQ.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.0 MB
ENCFF906NBV.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 94.7 MB
ENCFF908KRH.bam bam (alignments); assembly: GRCh38; genome annotation: V24 7.4 GB
ENCFF926TPZ.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 77.4 MB
ENCFF932UTI.bam bam (alignments); assembly: hg19; genome annotation: V19 5.6 GB
ENCFF938GEH.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.6 MB
ENCFF942GZO.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 105.1 MB
ENCFF959YCK.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 103.9 MB
ENCFF966KKU.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.5 MB
ENCFF978RNO.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 4.6 MB
ENCFF982LZV.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 98.1 MB
ENCSR208GPE ENCSR · via encode_api

RNA-seq on K562 cells treated with an shRNA knockdown against DDX1. (DDX1_BGKLV24)

Homo sapiens

92 data files
FileTypeSize
ENCFF003MPA.bam bam (alignments); assembly: GRCh38; genome annotation: V24 2.6 GB
ENCFF012HGO.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 64.1 MB
ENCFF017QVW.bam bam (alignments); assembly: hg19; genome annotation: V19 3.0 GB
ENCFF029XKQ.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 51.6 MB
ENCFF035PTV.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 53.6 MB
ENCFF037ASI.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 50.8 MB
ENCFF056GQJ.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 4.6 GB
ENCFF056IZS.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 72.3 MB
ENCFF075QLI.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 54.5 MB
ENCFF081WOU.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 61.7 MB
ENCFF083FIL.bam bam (alignments); assembly: hg19; genome annotation: V19 2.6 GB
ENCFF083XAJ.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 5.4 MB
ENCFF090BXT.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.2 MB
ENCFF106LGM.bam bam (alignments); assembly: GRCh38; genome annotation: V29 3.0 GB
ENCFF118QDQ.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.3 MB
ENCFF119LVD.bam bam (alignments); assembly: hg19; genome annotation: V19 2.9 GB
ENCFF125CWE.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 61.3 MB
ENCFF127FKO.fastq fastq (reads) 1.8 GB
ENCFF142FYN.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 63.3 MB
ENCFF160GKA.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 57.0 MB
ENCFF167AUM.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 4.0 MB
ENCFF169ZSF.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 4.0 GB
ENCFF184FWX.fastq fastq (reads) 1.9 GB
ENCFF184RKO.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 65.7 MB
ENCFF193SWU.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 4.1 GB
ENCFF193XZI.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF235VSZ.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 3.2 MB
ENCFF236OSM.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 67.0 MB
ENCFF237DUH.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 72.0 MB
ENCFF246KBS.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 12.9 MB
ENCFF249PHP.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.7 MB
ENCFF254GBV.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 56.2 MB
ENCFF258GMR.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 50.5 MB
ENCFF280LRA.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 2.9 MB
ENCFF302EUQ.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 72.4 MB
ENCFF305VRM.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 62.0 MB
ENCFF322SLF.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 61.8 MB
ENCFF330IVL.bam bam (alignments); assembly: hg19; genome annotation: V19 2.9 GB
ENCFF375XFI.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 61.3 MB
ENCFF382ZLG.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.0 GB
ENCFF383VZM.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF384PMZ.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.0 GB
ENCFF385BST.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 54.4 MB
ENCFF415RAU.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 64.0 MB
ENCFF460YPK.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 55.1 MB
ENCFF461JUR.fastq fastq (reads) 1.7 GB
ENCFF465RJA.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF468TXX.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 61.1 MB
ENCFF485DMS.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 48.6 MB
ENCFF488AVS.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 71.0 MB
ENCFF491BAM.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF516FLP.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 60.4 MB
ENCFF522VZO.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 52.1 MB
ENCFF539QKE.bam bam (alignments); assembly: hg19; genome annotation: V19 3.4 GB
ENCFF540HJZ.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 65.8 MB
ENCFF545XKC.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF551GXQ.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF566LDL.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 4.1 GB
ENCFF580GWL.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 66.1 MB
ENCFF588CFU.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 53.7 MB
ENCFF601FFK.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF642PWD.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.5 GB
ENCFF651KLQ.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF665BRZ.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 60.4 MB
ENCFF678HHM.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF678YBG.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 73.3 MB
ENCFF723XNO.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 47.2 MB
ENCFF727TPR.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 65.1 MB
ENCFF735RUU.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 58.7 MB
ENCFF737ULL.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 3.6 GB
ENCFF738TNX.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 60.2 MB
ENCFF738XKM.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.9 MB
ENCFF744IFB.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 63.6 MB
ENCFF756IOS.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF758FLI.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 51.1 MB
ENCFF766ODP.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 55.0 MB
ENCFF770LFG.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 60.4 MB
ENCFF780WFQ.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 53.2 MB
ENCFF783EBM.bam bam (alignments); assembly: hg19; genome annotation: V19 2.6 GB
ENCFF804DHN.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 55.1 MB
ENCFF827XEI.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 65.2 MB
ENCFF841UJK.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 52.1 MB
ENCFF862KJJ.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 3.5 GB
ENCFF878GXF.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 60.0 MB
ENCFF888WFP.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.8 MB
ENCFF908VQT.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 65.7 MB
ENCFF909AED.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 55.2 MB
ENCFF925MFO.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF948ZOO.bam bam (alignments); assembly: GRCh38; genome annotation: V29 3.5 GB
ENCFF982RUK.fastq fastq (reads) 1.6 GB
ENCFF985QIW.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF997SXJ.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 73.5 MB
ENCSR385TMY ENCSR · via encode_api

RNA-seq on HepG2 cells treated with an shRNA knockdown against RBM17. (RBM17_BGHLV26)

Homo sapiens

92 data files
FileTypeSize
ENCFF003SFV.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 5.6 MB
ENCFF009JNM.bam bam (alignments); assembly: GRCh38; genome annotation: V24 5.1 GB
ENCFF013AMG.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.8 MB
ENCFF015JGR.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.4 MB
ENCFF019ENB.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 81.0 MB
ENCFF020XQG.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 70.4 MB
ENCFF041JAJ.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 63.7 MB
ENCFF042KTF.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 68.1 MB
ENCFF047DGC.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 80.6 MB
ENCFF051FDT.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.4 MB
ENCFF054SKC.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 82.9 MB
ENCFF088MTP.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 92.7 MB
ENCFF089GNL.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 72.4 MB
ENCFF099PJS.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 72.1 MB
ENCFF100GSI.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 70.6 MB
ENCFF103CCY.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 79.1 MB
ENCFF109PXI.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 70.1 MB
ENCFF113MMI.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 90.9 MB
ENCFF122YTH.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 92.7 MB
ENCFF137TDF.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 77.0 MB
ENCFF154EFX.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 79.3 MB
ENCFF168MQJ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 65.6 MB
ENCFF175TRD.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.9 MB
ENCFF182PAM.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 84.2 MB
ENCFF194RBA.bam bam (alignments); assembly: GRCh38; genome annotation: V24 5.5 GB
ENCFF218XYS.bam bam (alignments); assembly: GRCh38; genome annotation: V29 6.2 GB
ENCFF243PRK.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 25.0 MB
ENCFF256FBW.fastq fastq (reads) 3.5 GB
ENCFF277UYY.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 8.8 GB
ENCFF297OEK.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.5 MB
ENCFF311VPH.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 68.0 MB
ENCFF324OFN.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 7.8 GB
ENCFF335ZBB.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.3 MB
ENCFF344VKK.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 3.8 MB
ENCFF363OMD.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 82.4 MB
ENCFF365OWP.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 71.1 MB
ENCFF369JLQ.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 80.5 MB
ENCFF383NQU.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF384ADP.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 78.0 MB
ENCFF397HZZ.bam bam (alignments); assembly: hg19; genome annotation: V19 4.5 GB
ENCFF414JYP.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 90.9 MB
ENCFF425QSF.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 82.2 MB
ENCFF442JOE.bam bam (alignments); assembly: hg19; genome annotation: V19 6.0 GB
ENCFF455JEN.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 80.5 MB
ENCFF470RYI.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF473NGX.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 4.1 MB
ENCFF479FWV.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 78.3 MB
ENCFF479ZDR.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 83.3 MB
ENCFF488BJN.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 73.1 MB
ENCFF490JWU.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 6.9 GB
ENCFF522UFE.bam bam (alignments); assembly: hg19; genome annotation: V19 4.5 GB
ENCFF528ELC.fastq fastq (reads) 3.2 GB
ENCFF534YYI.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 25.0 MB
ENCFF546RBP.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 91.1 MB
ENCFF547JCQ.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 74.2 MB
ENCFF555SCV.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 82.2 MB
ENCFF595UEQ.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 71.6 MB
ENCFF596OUL.bam bam (alignments); assembly: GRCh38; genome annotation: V24 6.2 GB
ENCFF605IAN.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF621MNB.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 7.9 GB
ENCFF634WDN.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 66.1 MB
ENCFF655VTG.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 71.1 MB
ENCFF665YCW.bam bam (alignments); assembly: hg19; genome annotation: V19 5.0 GB
ENCFF675PYM.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 76.6 MB
ENCFF693JKG.fastq fastq (reads) 3.6 GB
ENCFF711CQE.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 66.2 MB
ENCFF713SBM.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 79.0 MB
ENCFF720FYD.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 80.6 MB
ENCFF721OHZ.bam bam (alignments); assembly: GRCh38; genome annotation: V29 5.5 GB
ENCFF732YIZ.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 92.7 MB
ENCFF755NYE.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.4 MB
ENCFF755XVD.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 14.8 MB
ENCFF778AFW.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 80.3 MB
ENCFF786BKM.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 6.9 GB
ENCFF810XDT.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 69.2 MB
ENCFF829NJK.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 83.2 MB
ENCFF829YOU.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 75.9 MB
ENCFF832VDR.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 73.6 MB
ENCFF846PGW.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 80.9 MB
ENCFF907GMX.fastq fastq (reads) 3.2 GB
ENCFF911SNQ.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.5 MB
ENCFF916JAJ.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.5 GB
ENCFF920BIQ.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 73.1 MB
ENCFF922UJZ.bam bam (alignments); assembly: hg19; genome annotation: V19 5.0 GB
ENCFF923HRY.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.9 MB
ENCFF934ZYX.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.8 MB
ENCFF936RMX.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.9 MB
ENCFF939TRZ.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 7.7 GB
ENCFF947BVO.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 3.2 MB
ENCFF974AAP.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF993AIW.bam bam (alignments); assembly: hg19; genome annotation: V19 5.4 GB
ENCFF998AJM.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 79.7 MB
ENCSR305IPT ENCSR · via encode_api

eCLIP control experiment on K562 against KHSRP

Homo sapiens

8 data files
FileTypeSize
ENCFF077JHQ.bigWig bigWig (minus strand signal of unique reads) 29.0 MB
ENCFF232EFV.bigWig bigWig (minus strand signal of unique reads) 27.9 MB
ENCFF405WBU.bam bam (alignments) 673.3 MB
ENCFF517CRH.fastq fastq (reads) 668.8 MB
ENCFF644CKP.bam bam (alignments) 654.6 MB
ENCFF661IIQ.bigWig bigWig (plus strand signal of unique reads) 28.9 MB
ENCFF665VEO.bigWig bigWig (plus strand signal of unique reads) 30.1 MB
ENCFF927DLO.fastq fastq (reads) 728.7 MB
ENCSR655NWZ ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) pulldown experiment against RBM15B

15 data files
FileTypeSize
ENCFF037HIV.fastq fastq (reads) 255.5 MB
ENCFF103BRR.tsv tsv (library fraction) 265.2 KB
ENCFF117RDG.tsv tsv (enrichment) 168.0 KB
ENCFF160QZD.fastq fastq (reads) 324.3 MB
ENCFF185NKV.bed bed (peaks) 559.9 KB
ENCFF234HVI.fastq fastq (reads) 420.2 MB
ENCFF249WKL.tsv tsv (library fraction) 15.2 KB
ENCFF338IXJ.tsv tsv (library fraction) 1.1 MB
ENCFF461ZWO.fastq fastq (reads) 344.5 MB
ENCFF568JRD.tsv tsv (library fraction) 63.9 KB
ENCFF635SCW.tsv tsv (enrichment) 41.0 KB
ENCFF772AJT.fastq fastq (reads) 271.8 MB
ENCFF794MIP.bed bed (peaks) 93.3 KB
ENCFF820ODU.tsv tsv (enrichment) 10.0 KB
ENCFF915OWQ.tsv tsv (enrichment) 688.0 KB
ENCSR584LDM ENCSR · via encode_api

shRNA knockdown against DDX27 in K562 cells followed by RNA-seq. (DDX27_BGKLV19)

Homo sapiens

92 data files
FileTypeSize
ENCFF003VIV.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF008LRD.fastq fastq (reads) 1.7 GB
ENCFF040GAJ.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.7 MB
ENCFF044HUX.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 75.5 MB
ENCFF056FMA.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 67.6 MB
ENCFF069EQO.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF078IZS.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF082NEG.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 63.9 MB
ENCFF094WXB.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 4.0 GB
ENCFF103ZGK.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 60.6 MB
ENCFF120ICS.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.8 MB
ENCFF140MTO.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 69.2 MB
ENCFF141XOO.bam bam (alignments); assembly: hg19; genome annotation: V19 2.8 GB
ENCFF146GMR.bam bam (alignments); assembly: hg19; genome annotation: V19 2.8 GB
ENCFF153IOI.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 14.7 MB
ENCFF156YVT.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 66.3 MB
ENCFF158KCK.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 74.4 MB
ENCFF159QMN.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 4.2 MB
ENCFF174NFC.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 75.4 MB
ENCFF186UCQ.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 66.8 MB
ENCFF196SUI.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 67.3 MB
ENCFF197WFB.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 74.4 MB
ENCFF207DND.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 61.5 MB
ENCFF208FDQ.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 66.0 MB
ENCFF219FOX.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 65.8 MB
ENCFF237IIP.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.8 MB
ENCFF238XZL.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 66.3 MB
ENCFF243HAN.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.3 MB
ENCFF246BLT.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 64.5 MB
ENCFF263ACW.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 68.0 MB
ENCFF302RND.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 3.4 MB
ENCFF305GPN.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 73.6 MB
ENCFF315VFH.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 66.6 MB
ENCFF319FCJ.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.9 MB
ENCFF320COY.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 4.5 GB
ENCFF338TJG.bam bam (alignments); assembly: GRCh38; genome annotation: V29 3.4 GB
ENCFF342HXE.bam bam (alignments); assembly: hg19; genome annotation: V19 2.8 GB
ENCFF344UWW.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 62.2 MB
ENCFF350HHZ.bam bam (alignments); assembly: GRCh38; genome annotation: V24 2.8 GB
ENCFF379TMX.bam bam (alignments); assembly: GRCh38; genome annotation: V29 3.4 GB
ENCFF380SHI.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 63.7 MB
ENCFF422RCG.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF423NQN.fastq fastq (reads) 1.7 GB
ENCFF438VFN.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 3.9 GB
ENCFF446BZP.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 74.4 MB
ENCFF492IJK.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 60.7 MB
ENCFF493AEW.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 64.9 MB
ENCFF495BGW.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 62.1 MB
ENCFF497CDP.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 62.7 MB
ENCFF502JNB.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 72.7 MB
ENCFF519BIQ.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 58.8 MB
ENCFF521ODI.bam bam (alignments); assembly: GRCh38; genome annotation: V24 2.8 GB
ENCFF546FYB.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 66.6 MB
ENCFF551NBH.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 3.9 MB
ENCFF556PUO.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 67.4 MB
ENCFF580AHO.bam bam (alignments); assembly: hg19; genome annotation: V19 3.3 GB
ENCFF584MVH.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF589HWI.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF591PED.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 64.4 MB
ENCFF606AVE.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.4 GB
ENCFF632VDC.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.8 MB
ENCFF634FHL.bam bam (alignments); assembly: hg19; genome annotation: V19 3.3 GB
ENCFF637LLY.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF648GRM.fastq fastq (reads) 1.8 GB
ENCFF653CWH.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 5.5 MB
ENCFF657NTC.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 63.8 MB
ENCFF661NOK.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF676GGK.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF680IAH.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 66.6 MB
ENCFF681LTQ.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 4.0 GB
ENCFF694RDM.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 58.9 MB
ENCFF704JXU.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 65.1 MB
ENCFF733MSA.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF743QOZ.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 4.0 GB
ENCFF761CYF.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.3 MB
ENCFF775ZKR.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 60.4 MB
ENCFF781UBT.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 65.9 MB
ENCFF789BQF.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 73.4 MB
ENCFF792CNX.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 64.9 MB
ENCFF829OWA.bam bam (alignments); assembly: hg19; genome annotation: V19 2.8 GB
ENCFF879FVW.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 74.5 MB
ENCFF899ITK.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 65.9 MB
ENCFF905LXI.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 62.3 MB
ENCFF905YGS.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 73.6 MB
ENCFF907HLJ.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 4.5 GB
ENCFF921OOG.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 72.6 MB
ENCFF921RGZ.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 73.6 MB
ENCFF940JRF.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 64.3 MB
ENCFF941XQB.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 65.6 MB
ENCFF956DKX.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.4 GB
ENCFF967VRA.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 64.9 MB
ENCFF992VRQ.fastq fastq (reads) 1.8 GB
ENCSR492BKM ENCSR · via encode_api

shRNA knockdown against FAM120A in K562 cells followed by RNA-seq. (FAM120A_BGKLV19)

Homo sapiens

92 data files
FileTypeSize
ENCFF003XDE.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 65.0 MB
ENCFF005BHZ.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 3.4 GB
ENCFF009MGB.bam bam (alignments); assembly: GRCh38; genome annotation: V24 2.6 GB
ENCFF021WYM.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 78.3 MB
ENCFF045OFM.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 68.2 MB
ENCFF046HAQ.bam bam (alignments); assembly: hg19; genome annotation: V19 3.1 GB
ENCFF053HLW.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 73.3 MB
ENCFF054XQD.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 69.0 MB
ENCFF064PUW.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 66.3 MB
ENCFF065SPZ.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF073OIT.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 65.9 MB
ENCFF077YVT.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF082OSK.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.7 MB
ENCFF085YIH.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 3.5 GB
ENCFF096QHJ.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 80.1 MB
ENCFF106ONS.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 69.0 MB
ENCFF123GVE.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 14.2 MB
ENCFF128AXP.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 3.5 MB
ENCFF132LJM.bam bam (alignments); assembly: hg19; genome annotation: V19 3.0 GB
ENCFF158GAA.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 74.9 MB
ENCFF175CSL.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.3 MB
ENCFF177CTE.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 67.5 MB
ENCFF192RYD.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.2 GB
ENCFF195ZVL.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 69.2 MB
ENCFF199AYZ.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 86.8 MB
ENCFF231LIZ.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 71.4 MB
ENCFF232RVX.fastq fastq (reads) 1.7 GB
ENCFF238SIB.fastq fastq (reads) 1.6 GB
ENCFF286WRD.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF287IMO.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.8 MB
ENCFF287NTT.bam bam (alignments); assembly: hg19; genome annotation: V19 2.6 GB
ENCFF320SXL.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 79.3 MB
ENCFF335ULE.bam bam (alignments); assembly: GRCh38; genome annotation: V29 3.2 GB
ENCFF344ZOT.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 75.5 MB
ENCFF359KGF.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 74.9 MB
ENCFF364ZWY.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 61.3 MB
ENCFF367AUE.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 76.0 MB
ENCFF384VEY.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 59.7 MB
ENCFF391UNG.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 4.1 GB
ENCFF401DYY.bam bam (alignments); assembly: GRCh38; genome annotation: V29 3.9 GB
ENCFF428AZN.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 70.5 MB
ENCFF449MRS.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 87.9 MB
ENCFF473HMC.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 5.6 MB
ENCFF485YCA.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 67.4 MB
ENCFF493GMI.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 79.1 MB
ENCFF502KMO.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.2 GB
ENCFF509QEK.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF523ZWB.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 86.9 MB
ENCFF524SWU.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 4.1 GB
ENCFF528JNZ.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 69.7 MB
ENCFF533OCC.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.3 MB
ENCFF541QLM.fastq fastq (reads) 2.0 GB
ENCFF543HZY.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 75.4 MB
ENCFF548HYO.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 78.8 MB
ENCFF560HFQ.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 4.6 GB
ENCFF570JZA.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF579JBI.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.9 GB
ENCFF582XQN.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF595GDL.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 77.9 MB
ENCFF629ORJ.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 70.3 MB
ENCFF630EAW.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 3.1 MB
ENCFF644NDS.bam bam (alignments); assembly: hg19; genome annotation: V19 3.6 GB
ENCFF661TML.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF663FLL.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 87.7 MB
ENCFF666ILL.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 76.4 MB
ENCFF677QZY.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 71.2 MB
ENCFF686JOA.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF689CVB.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 75.5 MB
ENCFF689YFW.bam bam (alignments); assembly: hg19; genome annotation: V19 3.1 GB
ENCFF691ZKJ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 66.4 MB
ENCFF692JYO.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.8 MB
ENCFF692MQL.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 81.4 MB
ENCFF713AFP.bam bam (alignments); assembly: hg19; genome annotation: V19 2.6 GB
ENCFF735SFP.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.9 MB
ENCFF742OJW.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 69.7 MB
ENCFF743VSR.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 87.8 MB
ENCFF745YMB.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 64.5 MB
ENCFF758OJQ.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 64.8 MB
ENCFF767YDA.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 86.6 MB
ENCFF791ONR.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 78.1 MB
ENCFF791QXP.fastq fastq (reads) 1.9 GB
ENCFF814VSU.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 77.9 MB
ENCFF816GHU.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.9 MB
ENCFF834KUM.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 3.9 GB
ENCFF841VUF.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 4.1 MB
ENCFF844AYT.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 77.0 MB
ENCFF857XLF.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 74.0 MB
ENCFF908OBE.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 74.5 MB
ENCFF912YPW.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 67.4 MB
ENCFF948GXI.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 77.0 MB
ENCFF978NTY.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF999CBE.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.7 MB
ENCSR067UKU ENCSR · via encode_api

eCLIP control experiment on K562 against EWSR1

Homo sapiens

8 data files
FileTypeSize
ENCFF110AGV.fastq fastq (reads) 521.5 MB
ENCFF116KIF.bigWig bigWig (plus strand signal of unique reads) 17.4 MB
ENCFF130YYP.fastq fastq (reads) 471.3 MB
ENCFF323NPX.bigWig bigWig (minus strand signal of unique reads) 16.4 MB
ENCFF351VQX.bigWig bigWig (plus strand signal of unique reads) 17.0 MB
ENCFF485UCP.bam bam (alignments) 351.2 MB
ENCFF695GDV.bigWig bigWig (minus strand signal of unique reads) 16.8 MB
ENCFF810PWF.bam bam (alignments) 359.1 MB
ENCSR577OVP ENCSR · via encode_api

RNA-seq on K562 cells treated with an shRNA knockdown against DNAJC2. (DNAJC2_BGKLV24)

Homo sapiens

92 data files
FileTypeSize
ENCFF031GWD.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF032QZH.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 72.5 MB
ENCFF052FEV.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 60.3 MB
ENCFF092NAE.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 13.1 MB
ENCFF095NDS.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF124KMQ.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 60.9 MB
ENCFF126YTV.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 66.3 MB
ENCFF165TRV.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 78.9 MB
ENCFF167IQA.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF169ZZA.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 66.2 MB
ENCFF200YDK.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 4.8 GB
ENCFF202OHP.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 69.5 MB
ENCFF202PQE.fastq fastq (reads) 2.2 GB
ENCFF225BYJ.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 78.9 MB
ENCFF232HFJ.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 78.1 MB
ENCFF241PCY.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 4.1 MB
ENCFF246JPX.bam bam (alignments); assembly: hg19; genome annotation: V19 3.1 GB
ENCFF259BPS.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF296SLZ.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 4.3 GB
ENCFF298NID.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF316ONF.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.3 MB
ENCFF317NRP.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 64.2 MB
ENCFF324FMA.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 62.5 MB
ENCFF324GVC.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.7 GB
ENCFF326ZTS.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 64.4 MB
ENCFF339XSR.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF361QWJ.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 4.4 GB
ENCFF369SYQ.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 73.4 MB
ENCFF374URU.bam bam (alignments); assembly: hg19; genome annotation: V19 3.1 GB
ENCFF377YHO.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 67.4 MB
ENCFF382XXD.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 69.5 MB
ENCFF387TMS.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 73.7 MB
ENCFF399TLF.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 64.7 MB
ENCFF429LQN.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 62.1 MB
ENCFF442GEW.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 78.0 MB
ENCFF442ZLL.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 68.7 MB
ENCFF451QSQ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 65.7 MB
ENCFF492MDX.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 64.7 MB
ENCFF505BEI.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF509LZF.fastq fastq (reads) 2.0 GB
ENCFF531JNY.bam bam (alignments); assembly: hg19; genome annotation: V19 3.7 GB
ENCFF540NAB.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.2 GB
ENCFF545YNL.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 72.9 MB
ENCFF555WBI.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.1 GB
ENCFF572YPC.fastq fastq (reads) 1.9 GB
ENCFF574ZGJ.bam bam (alignments); assembly: GRCh38; genome annotation: V29 3.7 GB
ENCFF582FAM.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 66.3 MB
ENCFF584FJY.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 66.2 MB
ENCFF606FMU.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 70.3 MB
ENCFF617JSW.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 65.5 MB
ENCFF619XRO.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.7 MB
ENCFF621LMX.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 3.5 MB
ENCFF621TMH.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 56.5 MB
ENCFF623NBM.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 70.3 MB
ENCFF626GBB.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 65.8 MB
ENCFF633WFK.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 68.9 MB
ENCFF646BUZ.bam bam (alignments); assembly: hg19; genome annotation: V19 3.7 GB
ENCFF653FFC.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 58.0 MB
ENCFF662GLZ.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF664AOZ.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 68.1 MB
ENCFF665WFU.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.3 MB
ENCFF666OHO.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF684JIB.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 78.2 MB
ENCFF710HXU.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF714IFM.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF715IRR.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF743XCK.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.8 GB
ENCFF766FRA.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.8 MB
ENCFF787NEK.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 70.8 MB
ENCFF793LZE.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 72.9 MB
ENCFF803HQZ.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 67.4 MB
ENCFF817HWU.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 4.4 GB
ENCFF851ZKJ.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 3.2 MB
ENCFF862WEH.bam bam (alignments); assembly: hg19; genome annotation: V19 3.2 GB
ENCFF864RHE.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 77.2 MB
ENCFF880EJC.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 4.3 GB
ENCFF892CTK.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.9 MB
ENCFF892VAM.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 5.6 MB
ENCFF897YEV.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 73.7 MB
ENCFF908LIP.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 4.9 GB
ENCFF908NSO.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 68.9 MB
ENCFF913WSA.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 71.9 MB
ENCFF919APP.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 61.4 MB
ENCFF923BAF.bam bam (alignments); assembly: GRCh38; genome annotation: V29 3.8 GB
ENCFF937JTS.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 66.3 MB
ENCFF942SGV.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 61.8 MB
ENCFF945YQN.fastq fastq (reads) 2.1 GB
ENCFF958ZED.bam bam (alignments); assembly: hg19; genome annotation: V19 3.2 GB
ENCFF959GSB.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 64.8 MB
ENCFF965XSR.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 62.3 MB
ENCFF970OQP.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 60.9 MB
ENCFF997KVV.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 65.9 MB
ENCSR130TOJ ENCSR · via encode_api

eCLIP control experiment on HepG2 against QKI

Homo sapiens

8 data files
FileTypeSize
ENCFF015GLL.bam bam (alignments) 534.0 MB
ENCFF365AGK.bam bam (alignments) 523.1 MB
ENCFF368GUP.bigWig bigWig (minus strand signal of unique reads) 22.4 MB
ENCFF387NSQ.bigWig bigWig (minus strand signal of unique reads) 22.9 MB
ENCFF436PYT.bigWig bigWig (plus strand signal of unique reads) 23.4 MB
ENCFF578ENS.bigWig bigWig (plus strand signal of unique reads) 22.9 MB
ENCFF702IDH.fastq fastq (reads) 609.9 MB
ENCFF974DXZ.fastq fastq (reads) 637.4 MB
ENCSR281IUF ENCSR · via encode_api

RNA-seq on K562 cells treated with an shRNA knockdown against DDX19B. (DDX19B_BGKLV32)

Homo sapiens

92 data files
FileTypeSize
ENCFF009PCM.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.4 MB
ENCFF014HGS.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 108.1 MB
ENCFF016VSK.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 99.0 MB
ENCFF017PRY.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 112.5 MB
ENCFF025IPQ.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 98.9 MB
ENCFF031TEB.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 123.3 MB
ENCFF050XWF.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF087MMA.bam bam (alignments); assembly: GRCh38; genome annotation: V24 5.6 GB
ENCFF087MRZ.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 7.9 GB
ENCFF091DQU.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 123.2 MB
ENCFF094TIP.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 5.6 MB
ENCFF095IHA.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.4 MB
ENCFF096VAM.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 4.3 MB
ENCFF105KWF.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF112KWA.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.0 MB
ENCFF122SFX.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 7.9 GB
ENCFF124OOS.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF141QOM.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 98.3 MB
ENCFF144XQX.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 121.7 MB
ENCFF173FKY.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 121.7 MB
ENCFF173FMX.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 106.2 MB
ENCFF193YBH.bam bam (alignments); assembly: GRCh38; genome annotation: V24 6.9 GB
ENCFF206TEC.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 88.2 MB
ENCFF209TME.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 112.7 MB
ENCFF219XYA.bam bam (alignments); assembly: hg19; genome annotation: V19 6.7 GB
ENCFF232ALZ.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 112.5 MB
ENCFF232VPL.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.7 MB
ENCFF241IWW.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 8.9 GB
ENCFF248AFV.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 97.4 MB
ENCFF274IFL.fastq fastq (reads) 3.7 GB
ENCFF278CGE.bam bam (alignments); assembly: hg19; genome annotation: V19 6.6 GB
ENCFF292AXK.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 100.1 MB
ENCFF311PJL.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 101.0 MB
ENCFF313WMR.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 108.2 MB
ENCFF321VVG.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 120.0 MB
ENCFF337IEG.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.9 MB
ENCFF348REZ.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 94.8 MB
ENCFF380TGI.bam bam (alignments); assembly: GRCh38; genome annotation: V24 5.6 GB
ENCFF401SXN.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.5 MB
ENCFF416YNS.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 121.7 MB
ENCFF420LTV.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 93.0 MB
ENCFF429HMU.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 113.9 MB
ENCFF464QIJ.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 98.5 MB
ENCFF482HHV.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 96.5 MB
ENCFF482LWL.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.9 MB
ENCFF493AXC.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 7.8 GB
ENCFF501TFW.bam bam (alignments); assembly: hg19; genome annotation: V19 5.5 GB
ENCFF532NQR.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 107.6 MB
ENCFF542WSE.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.6 MB
ENCFF552HOW.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 100.7 MB
ENCFF552OFL.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 113.9 MB
ENCFF554ULH.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.5 MB
ENCFF557GZR.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 106.4 MB
ENCFF576AAE.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 104.4 MB
ENCFF579GFT.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 110.2 MB
ENCFF584WPM.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.5 MB
ENCFF602TJN.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.5 MB
ENCFF613HUU.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 98.9 MB
ENCFF617UEV.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 17.7 MB
ENCFF619VRM.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 90.7 MB
ENCFF673VNN.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 111.2 MB
ENCFF676XJB.bam bam (alignments); assembly: hg19; genome annotation: V19 5.5 GB
ENCFF683LUM.bam bam (alignments); assembly: GRCh38; genome annotation: V29 6.9 GB
ENCFF704ZGE.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 8.0 GB
ENCFF719AHI.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 102.8 MB
ENCFF721XLH.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF728DJJ.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 100.4 MB
ENCFF732FVE.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 95.0 MB
ENCFF736KRN.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 98.2 MB
ENCFF752AON.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 9.0 GB
ENCFF765JVM.fastq fastq (reads) 3.8 GB
ENCFF768LQE.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 105.5 MB
ENCFF771IBM.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 106.3 MB
ENCFF780OXE.bam bam (alignments); assembly: GRCh38; genome annotation: V24 6.9 GB
ENCFF787LYV.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF789WKD.bam bam (alignments); assembly: hg19; genome annotation: V19 5.6 GB
ENCFF808NHB.bam bam (alignments); assembly: GRCh38; genome annotation: V29 6.9 GB
ENCFF820IOT.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 100.4 MB
ENCFF856WWK.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF865DLZ.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 4.3 MB
ENCFF874HNC.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 101.1 MB
ENCFF882RDP.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 101.6 MB
ENCFF904KMT.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 97.7 MB
ENCFF905IVF.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 91.0 MB
ENCFF906LOW.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 108.8 MB
ENCFF906YOC.fastq fastq (reads) 3.8 GB
ENCFF915PED.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 92.6 MB
ENCFF932CZM.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 5.4 MB
ENCFF942GHS.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 105.8 MB
ENCFF942ZQA.fastq fastq (reads) 3.7 GB
ENCFF949JOX.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 108.2 MB
ENCFF998TLB.bam bam (alignments); assembly: hg19; genome annotation: V19 5.6 GB
ENCSR182DAW ENCSR · via encode_api

shRNA knockdown against HNRNPA1 in HepG2 cells followed by RNA-seq. (HNRNPA1-BGHLV20)

Homo sapiens

92 data files
FileTypeSize
ENCFF013UDX.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 76.1 MB
ENCFF032FGV.bam bam (alignments); assembly: hg19; genome annotation: V19 2.9 GB
ENCFF040NOP.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 67.5 MB
ENCFF041HCV.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 54.8 MB
ENCFF045OGG.bam bam (alignments); assembly: hg19; genome annotation: V19 3.3 GB
ENCFF068KKI.fastq fastq (reads) 1.8 GB
ENCFF080XUV.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF096PID.fastq fastq (reads) 2.1 GB
ENCFF105UIY.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.3 MB
ENCFF110DCP.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 62.8 MB
ENCFF118CLX.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 77.6 MB
ENCFF120ALA.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 4.7 GB
ENCFF123WFL.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 66.4 MB
ENCFF131MUJ.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 65.0 MB
ENCFF140POW.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 70.4 MB
ENCFF170ITP.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 4.0 GB
ENCFF174IAV.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 68.3 MB
ENCFF182QFS.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF196EOX.fastq fastq (reads) 1.9 GB
ENCFF206FJI.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 76.1 MB
ENCFF222SEE.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 69.4 MB
ENCFF227VQF.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.3 MB
ENCFF232OUP.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 76.1 MB
ENCFF247UXS.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 69.6 MB
ENCFF289RGO.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF290IYV.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 3.4 MB
ENCFF292LAG.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 64.8 MB
ENCFF306JTS.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 59.0 MB
ENCFF314RVA.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 77.5 MB
ENCFF316JGQ.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 4.4 GB
ENCFF327VVD.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 56.6 MB
ENCFF339VWZ.bam bam (alignments); assembly: hg19; genome annotation: V19 3.4 GB
ENCFF350IPK.bam bam (alignments); assembly: hg19; genome annotation: V19 3.9 GB
ENCFF354LXR.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.9 MB
ENCFF367BZI.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 69.0 MB
ENCFF376MMV.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 57.8 MB
ENCFF414IGV.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 60.7 MB
ENCFF436NFA.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 4.3 MB
ENCFF440GSH.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 56.7 MB
ENCFF467TGN.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 60.9 MB
ENCFF474TCJ.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 5.3 GB
ENCFF491UWY.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 60.5 MB
ENCFF508UDY.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 55.3 MB
ENCFF510TRJ.bam bam (alignments); assembly: GRCh38; genome annotation: V29 3.4 GB
ENCFF521GJV.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 67.6 MB
ENCFF540YVH.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 70.2 MB
ENCFF551NOA.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF565SIR.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF566WLB.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF567CKU.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 66.7 MB
ENCFF573YTX.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 5.7 MB
ENCFF590HJK.bam bam (alignments); assembly: hg19; genome annotation: V19 2.9 GB
ENCFF594UGX.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 74.8 MB
ENCFF624RDL.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 14.7 MB
ENCFF672BZP.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 69.5 MB
ENCFF673QDW.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 67.6 MB
ENCFF679HES.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 58.8 MB
ENCFF690SNA.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 59.6 MB
ENCFF702KXN.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF709RAM.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.9 MB
ENCFF730FDW.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 59.6 MB
ENCFF733WYV.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 55.7 MB
ENCFF734TRG.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 60.8 MB
ENCFF736KDF.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 65.3 MB
ENCFF747LKA.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 57.3 MB
ENCFF761LRD.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.4 GB
ENCFF780PRE.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 60.8 MB
ENCFF784MYV.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 67.6 MB
ENCFF785KKL.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 53.2 MB
ENCFF786LGW.fastq fastq (reads) 2.2 GB
ENCFF796RYI.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.4 GB
ENCFF822CJD.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 65.4 MB
ENCFF838KAZ.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF848ALU.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 63.1 MB
ENCFF848WLR.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.0 GB
ENCFF856DFH.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 2.9 MB
ENCFF860ASI.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF864XJR.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 59.2 MB
ENCFF867GLI.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 60.5 MB
ENCFF877MJV.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 66.4 MB
ENCFF888TAT.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 4.8 GB
ENCFF893IYK.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF921GGF.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF941GQI.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 63.5 MB
ENCFF946WES.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF955AVQ.bam bam (alignments); assembly: hg19; genome annotation: V19 3.4 GB
ENCFF965NOI.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 68.3 MB
ENCFF966YYV.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 4.0 GB
ENCFF969IHQ.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.7 MB
ENCFF976QXM.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 66.1 MB
ENCFF983PNM.bam bam (alignments); assembly: GRCh38; genome annotation: V29 4.0 GB
ENCFF988QYV.bam bam (alignments); assembly: GRCh38; genome annotation: V24 2.9 GB
ENCSR843LYF ENCSR · via encode_api

RNA-seq on K562 cells treated with an shRNA knockdown against YTHDC2. (YTHDC2_BGKLV28)

Homo sapiens

92 data files
FileTypeSize
ENCFF015MCT.bam bam (alignments); assembly: hg19; genome annotation: V19 8.1 GB
ENCFF028RJQ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 99.0 MB
ENCFF031SVK.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 8.5 GB
ENCFF067UWI.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 96.3 MB
ENCFF086TBX.bam bam (alignments); assembly: hg19; genome annotation: V19 6.5 GB
ENCFF088ONL.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.5 MB
ENCFF092MDR.bam bam (alignments); assembly: GRCh38; genome annotation: V29 8.0 GB
ENCFF098QBG.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 93.9 MB
ENCFF102JMK.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.9 MB
ENCFF106ZAN.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 101.9 MB
ENCFF114XOP.fastq fastq (reads) 4.5 GB
ENCFF116TGW.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 97.4 MB
ENCFF120OJL.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 113.6 MB
ENCFF122UZL.bam bam (alignments); assembly: hg19; genome annotation: V19 6.5 GB
ENCFF132YOG.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 99.2 MB
ENCFF144LZB.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 3.8 MB
ENCFF145MIG.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 99.8 MB
ENCFF151ERV.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 111.6 MB
ENCFF158GER.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 102.5 MB
ENCFF166IVF.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 109.8 MB
ENCFF182FTB.bam bam (alignments); assembly: GRCh38; genome annotation: V24 6.6 GB
ENCFF184UGO.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 96.3 MB
ENCFF196XFP.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 92.7 MB
ENCFF212YNE.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 88.7 MB
ENCFF222JBB.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 88.2 MB
ENCFF225HXJ.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.5 MB
ENCFF231MOV.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 90.8 MB
ENCFF238MNE.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF240VGF.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 98.6 MB
ENCFF246LZZ.bam bam (alignments); assembly: GRCh38; genome annotation: V24 8.0 GB
ENCFF248WSR.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 94.2 MB
ENCFF314NHM.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 96.5 MB
ENCFF315GRS.bam bam (alignments); assembly: hg19; genome annotation: V19 6.8 GB
ENCFF321DRY.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 8.9 GB
ENCFF330XRH.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 102.1 MB
ENCFF340IHH.bam bam (alignments); assembly: hg19; genome annotation: V19 6.8 GB
ENCFF343ENC.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 113.1 MB
ENCFF344EPJ.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 96.6 MB
ENCFF387QCB.bam bam (alignments); assembly: GRCh38; genome annotation: V24 8.3 GB
ENCFF426TTR.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 98.9 MB
ENCFF442HCY.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 113.1 MB
ENCFF453NXW.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 100.3 MB
ENCFF456SJV.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 114.9 MB
ENCFF491BIX.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 91.8 MB
ENCFF503PZO.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 4.9 MB
ENCFF515RAN.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.9 MB
ENCFF523FWQ.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 108.6 MB
ENCFF525WCA.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 108.6 MB
ENCFF527BNA.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF543ULI.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.9 MB
ENCFF562JKQ.fastq fastq (reads) 4.3 GB
ENCFF581DSO.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 98.9 MB
ENCFF585ONI.bam bam (alignments); assembly: hg19; genome annotation: V19 7.8 GB
ENCFF598DDF.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 99.3 MB
ENCFF610BTB.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 110.1 MB
ENCFF624CYB.fastq fastq (reads) 4.3 GB
ENCFF630LUT.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.5 MB
ENCFF641NRX.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 25.0 MB
ENCFF671JAZ.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 108.1 MB
ENCFF673UOX.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 98.3 MB
ENCFF686PDI.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 114.9 MB
ENCFF700MDP.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 96.4 MB
ENCFF717MDP.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 4.3 MB
ENCFF728IEL.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 91.2 MB
ENCFF734PYL.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 86.7 MB
ENCFF736RCY.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 10.0 GB
ENCFF741KQS.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 5.6 MB
ENCFF743FMM.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 25.0 MB
ENCFF765BQD.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 84.3 MB
ENCFF809LOQ.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 95.6 MB
ENCFF811TGY.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 91.0 MB
ENCFF813BWO.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 16.1 MB
ENCFF814DTP.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 91.1 MB
ENCFF831QZM.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.4 MB
ENCFF857JBW.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.9 MB
ENCFF859AKW.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 110.1 MB
ENCFF890YYP.bam bam (alignments); assembly: GRCh38; genome annotation: V24 6.8 GB
ENCFF893OLJ.bam bam (alignments); assembly: GRCh38; genome annotation: V29 8.3 GB
ENCFF905RJQ.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF911DKW.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.4 MB
ENCFF913GPE.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 86.8 MB
ENCFF915GMP.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.6 MB
ENCFF921UIC.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 9.6 GB
ENCFF924AGA.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 94.2 MB
ENCFF931IOG.fastq fastq (reads) 4.5 GB
ENCFF937PZY.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 99.1 MB
ENCFF938AJN.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF949SSV.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 88.7 MB
ENCFF958PRV.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.4 MB
ENCFF961HYT.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 8.9 GB
ENCFF963CFB.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 8.5 GB
ENCFF995BNK.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 102.6 MB
ENCSR296ERI ENCSR · via encode_api

RNA-seq on HepG2 cells treated with an shRNA knockdown against PUS1. (PUS1_BGHLV31)

Homo sapiens

92 data files
FileTypeSize
ENCFF020ZBS.bam bam (alignments); assembly: hg19; genome annotation: V19 2.9 GB
ENCFF023FAS.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF062LYO.bam bam (alignments); assembly: GRCh38; genome annotation: V29 4.1 GB
ENCFF064QFC.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 82.1 MB
ENCFF066FUY.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF077SLF.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 85.0 MB
ENCFF087JNB.bam bam (alignments); assembly: hg19; genome annotation: V19 3.2 GB
ENCFF090LNW.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 80.9 MB
ENCFF094XAH.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 87.3 MB
ENCFF095PST.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 95.0 MB
ENCFF111LTX.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.7 MB
ENCFF156VCD.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 78.2 MB
ENCFF165VFE.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 5.5 MB
ENCFF167DMX.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 3.5 MB
ENCFF192JKX.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 81.5 MB
ENCFF192QLL.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 82.4 MB
ENCFF235WDT.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 96.8 MB
ENCFF240GVH.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 3.0 MB
ENCFF244GCE.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 85.5 MB
ENCFF262TXO.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.4 MB
ENCFF265PGK.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 17.1 MB
ENCFF269FHM.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 77.9 MB
ENCFF273DWK.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 80.8 MB
ENCFF273NJN.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 87.7 MB
ENCFF283SGE.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 84.8 MB
ENCFF294YEQ.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 75.1 MB
ENCFF310CCU.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.0 GB
ENCFF316GJO.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.0 MB
ENCFF316WRA.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 84.6 MB
ENCFF317YKN.bam bam (alignments); assembly: hg19; genome annotation: V19 3.9 GB
ENCFF320JLE.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF327CZK.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 4.4 MB
ENCFF327EDE.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF332UXW.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 92.6 MB
ENCFF374UDW.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 5.5 GB
ENCFF377BWN.bam bam (alignments); assembly: hg19; genome annotation: V19 2.9 GB
ENCFF380NRP.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 83.4 MB
ENCFF380TNU.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 93.6 MB
ENCFF394EVN.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 83.3 MB
ENCFF406NWM.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF407KHY.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF420EGL.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF430XES.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 87.5 MB
ENCFF442UIQ.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.3 GB
ENCFF457BEY.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 91.5 MB
ENCFF460RYY.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 90.1 MB
ENCFF495SUF.fastq fastq (reads) 2.1 GB
ENCFF496YDE.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 5.8 GB
ENCFF530MNB.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 82.2 MB
ENCFF551VAB.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 93.6 MB
ENCFF554RYZ.bam bam (alignments); assembly: GRCh38; genome annotation: V29 3.8 GB
ENCFF555VST.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 84.7 MB
ENCFF556XKJ.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF559ZLS.fastq fastq (reads) 2.1 GB
ENCFF569DZG.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.5 MB
ENCFF569YNW.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF574QJN.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 5.0 GB
ENCFF579YNE.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 91.5 MB
ENCFF585OVC.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 90.8 MB
ENCFF595RQL.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 80.3 MB
ENCFF614VDC.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 87.3 MB
ENCFF626UFV.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 95.1 MB
ENCFF627HSF.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 77.9 MB
ENCFF647AEA.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 85.2 MB
ENCFF703EZT.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 85.9 MB
ENCFF703HLE.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 97.1 MB
ENCFF706WCI.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.5 MB
ENCFF722OSK.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 85.1 MB
ENCFF727ATR.bam bam (alignments); assembly: hg19; genome annotation: V19 3.6 GB
ENCFF743UIE.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF745XZP.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.1 GB
ENCFF753QWH.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 81.4 MB
ENCFF771SJB.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 78.8 MB
ENCFF772SMN.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 88.1 MB
ENCFF777KNS.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.4 MB
ENCFF789WTY.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 6.3 GB
ENCFF853NIO.fastq fastq (reads) 2.3 GB
ENCFF857IOT.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 83.5 MB
ENCFF885GLF.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 5.5 GB
ENCFF890KXW.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 5.1 GB
ENCFF896FNQ.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 95.1 MB
ENCFF899IVX.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 87.7 MB
ENCFF917SFP.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 82.9 MB
ENCFF953SLK.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 85.3 MB
ENCFF953STT.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 84.9 MB
ENCFF958TBN.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 4.2 MB
ENCFF965KMK.bam bam (alignments); assembly: hg19; genome annotation: V19 3.2 GB
ENCFF968SIB.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 97.1 MB
ENCFF969YUD.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 81.0 MB
ENCFF988WOT.fastq fastq (reads) 2.3 GB
ENCFF992UAR.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 88.1 MB
ENCFF996LET.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.8 GB
ENCSR631CJA ENCSR · via encode_api

eCLIP control experiment on K562 against SMNDC1

Homo sapiens

8 data files
FileTypeSize
ENCFF030CUC.bigWig bigWig (plus strand signal of unique reads) 16.6 MB
ENCFF364ZNC.bam bam (alignments) 348.2 MB
ENCFF716JKI.bigWig bigWig (minus strand signal of unique reads) 15.6 MB
ENCFF822QAR.bigWig bigWig (minus strand signal of unique reads) 16.0 MB
ENCFF842VFC.fastq fastq (reads) 562.2 MB
ENCFF918AAS.bam bam (alignments) 344.0 MB
ENCFF930MIS.bigWig bigWig (plus strand signal of unique reads) 16.2 MB
ENCFF981COP.fastq fastq (reads) 630.9 MB
ENCSR518JXY ENCSR · via encode_api

RNA-seq on HepG2 cells treated with an shRNA knockdown against ZNF622. (ZNF622_BGHLV33)

Homo sapiens

92 data files
FileTypeSize
ENCFF004EPM.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 87.1 MB
ENCFF012WHT.bam bam (alignments); assembly: hg19; genome annotation: V19 6.0 GB
ENCFF022TYX.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 8.9 GB
ENCFF027FNK.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 90.5 MB
ENCFF040ETH.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 101.4 MB
ENCFF051SYZ.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 104.0 MB
ENCFF088TFY.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.4 MB
ENCFF091JKG.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF093XOB.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 88.5 MB
ENCFF111BHC.bam bam (alignments); assembly: GRCh38; genome annotation: V24 6.0 GB
ENCFF113CFG.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 10.2 GB
ENCFF117MYN.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 90.5 MB
ENCFF120GAE.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 84.8 MB
ENCFF128EYL.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 94.2 MB
ENCFF129HHN.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 104.0 MB
ENCFF142FVH.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 90.7 MB
ENCFF147UYT.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 92.1 MB
ENCFF148UAV.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 93.7 MB
ENCFF162JOY.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 103.1 MB
ENCFF170MRN.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 82.2 MB
ENCFF191BTR.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 84.8 MB
ENCFF194GDF.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 3.0 MB
ENCFF199JGV.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 90.5 MB
ENCFF246ERU.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 91.0 MB
ENCFF261ZHR.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 87.7 MB
ENCFF264JFH.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 93.3 MB
ENCFF279GMQ.bam bam (alignments); assembly: hg19; genome annotation: V19 5.9 GB
ENCFF283ZRA.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 93.0 MB
ENCFF298FAM.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 88.0 MB
ENCFF335ZCC.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 3.7 MB
ENCFF338IQY.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.7 MB
ENCFF343JFZ.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 90.1 MB
ENCFF353JNK.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 90.5 MB
ENCFF354WBJ.bam bam (alignments); assembly: GRCh38; genome annotation: V29 7.4 GB
ENCFF364LBA.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 93.1 MB
ENCFF399EUB.fastq fastq (reads) 4.1 GB
ENCFF423WTS.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 102.2 MB
ENCFF427VXM.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.4 MB
ENCFF429EKS.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 4.7 MB
ENCFF450ZNB.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 84.4 MB
ENCFF462LTZ.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.9 MB
ENCFF470BDL.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 91.1 MB
ENCFF481ESY.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 25.0 MB
ENCFF483GHR.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 9.0 GB
ENCFF510EXO.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 85.2 MB
ENCFF520XNN.bam bam (alignments); assembly: GRCh38; genome annotation: V29 7.3 GB
ENCFF529TSN.bam bam (alignments); assembly: hg19; genome annotation: V19 6.0 GB
ENCFF543WDD.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 84.0 MB
ENCFF545VRV.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.9 MB
ENCFF545YYU.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 103.2 MB
ENCFF553TOZ.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 25.0 MB
ENCFF567UDJ.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 101.5 MB
ENCFF573VNQ.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 8.9 GB
ENCFF575KZX.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 81.9 MB
ENCFF576KNX.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.5 MB
ENCFF587IEX.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 91.8 MB
ENCFF592GCC.bam bam (alignments); assembly: GRCh38; genome annotation: V24 7.3 GB
ENCFF592PCZ.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF597FJT.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 4.5 MB
ENCFF600DCI.fastq fastq (reads) 4.1 GB
ENCFF602JDY.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 93.2 MB
ENCFF612CEH.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 90.7 MB
ENCFF625VQB.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 103.2 MB
ENCFF631HEW.bam bam (alignments); assembly: GRCh38; genome annotation: V24 7.4 GB
ENCFF662GUA.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.4 MB
ENCFF663JEE.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF674BBE.bam bam (alignments); assembly: hg19; genome annotation: V19 5.9 GB
ENCFF715KJL.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 92.5 MB
ENCFF742FKS.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 93.7 MB
ENCFF751AZO.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.4 MB
ENCFF759XXH.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 92.2 MB
ENCFF769GTT.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 102.2 MB
ENCFF774XMI.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 5.6 MB
ENCFF776IMC.bam bam (alignments); assembly: hg19; genome annotation: V19 7.1 GB
ENCFF781VJO.bam bam (alignments); assembly: GRCh38; genome annotation: V24 6.1 GB
ENCFF792XLX.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 100.8 MB
ENCFF846YSQ.bam bam (alignments); assembly: hg19; genome annotation: V19 7.2 GB
ENCFF862QAK.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 17.0 MB
ENCFF869RJV.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 85.5 MB
ENCFF889IRC.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 102.5 MB
ENCFF897LWW.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 10.1 GB
ENCFF926NOE.fastq fastq (reads) 4.1 GB
ENCFF934KIZ.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 88.8 MB
ENCFF954MNY.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF961ZKH.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.0 MB
ENCFF965KPD.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.5 MB
ENCFF965RKV.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 86.3 MB
ENCFF967YBN.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 94.5 MB
ENCFF979PPY.fastq fastq (reads) 4.2 GB
ENCFF981AXU.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 9.0 GB
ENCFF982JBN.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 101.5 MB
ENCFF997DEA.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 90.5 MB
ENCSR946OFN ENCSR · via encode_api

shRNA knockdown against TROVE2 in HepG2 cells followed by RNA-seq. (TROVE2_BGHLV16)

Homo sapiens

92 data files
FileTypeSize
ENCFF006HME.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 50.5 MB
ENCFF030TUO.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 5.6 MB
ENCFF045NJQ.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 12.8 MB
ENCFF053EYO.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 4.1 MB
ENCFF059EKP.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 48.3 MB
ENCFF064NRZ.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 3.7 GB
ENCFF073KMT.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.8 MB
ENCFF082XEF.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF095BZX.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.2 MB
ENCFF096PYQ.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 49.3 MB
ENCFF099NGA.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 3.3 GB
ENCFF099TTE.bam bam (alignments); assembly: hg19; genome annotation: V19 2.2 GB
ENCFF101CEO.bam bam (alignments); assembly: hg19; genome annotation: V19 2.0 GB
ENCFF102TKH.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 45.7 MB
ENCFF103RNM.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 51.2 MB
ENCFF115CEE.bam bam (alignments); assembly: hg19; genome annotation: V19 2.6 GB
ENCFF119ZCG.bam bam (alignments); assembly: hg19; genome annotation: V19 2.4 GB
ENCFF128RSC.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 3.0 GB
ENCFF142NHW.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 56.5 MB
ENCFF160LSJ.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.7 MB
ENCFF163BXI.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 50.3 MB
ENCFF171OWJ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 52.2 MB
ENCFF202YYQ.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF204HQD.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 55.1 MB
ENCFF220MSN.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 48.8 MB
ENCFF233IZY.fastq fastq (reads) 1.4 GB
ENCFF252IDD.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 3.0 GB
ENCFF257DUD.bam bam (alignments); assembly: GRCh38; genome annotation: V24 2.0 GB
ENCFF257EHL.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 51.5 MB
ENCFF265CRF.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 2.6 MB
ENCFF276PMY.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 51.7 MB
ENCFF278WVM.fastq fastq (reads) 1.5 GB
ENCFF285ITB.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 48.3 MB
ENCFF286BWN.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 44.7 MB
ENCFF361TTG.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 57.6 MB
ENCFF380WJD.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.7 MB
ENCFF384REO.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 50.4 MB
ENCFF395URL.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 57.0 MB
ENCFF413BXX.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 47.6 MB
ENCFF418QKV.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 52.6 MB
ENCFF425MWW.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 48.2 MB
ENCFF427RKG.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF453PBE.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.2 MB
ENCFF464SMQ.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.9 MB
ENCFF479UPC.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 47.8 MB
ENCFF486LUL.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 50.9 MB
ENCFF491JWH.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 50.2 MB
ENCFF496SSR.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF545RCZ.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 51.0 MB
ENCFF558UNB.bam bam (alignments); assembly: hg19; genome annotation: V19 2.2 GB
ENCFF565GTX.bam bam (alignments); assembly: hg19; genome annotation: V19 2.0 GB
ENCFF573RJG.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 49.1 MB
ENCFF590RCK.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 57.6 MB
ENCFF598CPJ.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF602TQV.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 50.3 MB
ENCFF616GGV.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF617VEE.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 56.0 MB
ENCFF626LVX.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 56.0 MB
ENCFF631SLY.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF634QDI.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 2.9 MB
ENCFF647XZS.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 47.1 MB
ENCFF683PNY.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 52.0 MB
ENCFF688ROD.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 51.6 MB
ENCFF692MME.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 55.7 MB
ENCFF696BXF.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 49.7 MB
ENCFF703EMC.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 46.0 MB
ENCFF703VHW.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 51.8 MB
ENCFF713RJU.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 49.4 MB
ENCFF724LKK.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.8 MB
ENCFF727PEY.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 3.3 GB
ENCFF736AQS.bam bam (alignments); assembly: GRCh38; genome annotation: V29 2.4 GB
ENCFF748MKW.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 56.8 MB
ENCFF771NXR.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 56.5 MB
ENCFF772JIO.bam bam (alignments); assembly: GRCh38; genome annotation: V24 2.4 GB
ENCFF773TIP.fastq fastq (reads) 1.3 GB
ENCFF776AUD.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 49.6 MB
ENCFF778GXB.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 51.6 MB
ENCFF821MGJ.bam bam (alignments); assembly: GRCh38; genome annotation: V24 2.2 GB
ENCFF821TUP.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 50.8 MB
ENCFF849DWS.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 50.2 MB
ENCFF855RTT.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 3.4 GB
ENCFF863LGX.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 56.8 MB
ENCFF865HIP.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 50.6 MB
ENCFF867TEV.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.2 MB
ENCFF876CMZ.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 55.7 MB
ENCFF890ZNO.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 49.2 MB
ENCFF901UFY.bam bam (alignments); assembly: GRCh38; genome annotation: V29 2.6 GB
ENCFF940WWC.bam bam (alignments); assembly: GRCh38; genome annotation: V24 2.6 GB
ENCFF945REE.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF950USC.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.7 MB
ENCFF992YHM.fastq fastq (reads) 1.3 GB
ENCFF999XIF.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 51.5 MB
ENCSR890PDQ ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) pulldown experiment against HNRNPA2B1

13 data files
FileTypeSize
ENCFF126ADB.tsv tsv (enrichment) 10.0 KB
ENCFF174STT.tsv tsv (library fraction) 265.6 KB
ENCFF272CDH.fastq fastq (reads) 374.3 MB
ENCFF284NLC.fastq fastq (reads) 393.8 MB
ENCFF408PHK.tsv tsv (library fraction) 15.1 KB
ENCFF486QQA.fastq fastq (reads) 513.4 MB
ENCFF632KXS.tsv tsv (enrichment) 168.0 KB
ENCFF633PYG.fastq fastq (reads) 427.3 MB
ENCFF638JTR.tsv tsv (enrichment) 688.0 KB
ENCFF704ABD.tsv tsv (library fraction) 63.7 KB
ENCFF733IIC.tsv tsv (enrichment) 41.0 KB
ENCFF871IQB.fastq fastq (reads) 307.2 MB
ENCFF999DDY.tsv tsv (library fraction) 1.1 MB
ENCSR736LKF ENCSR · via encode_api

eCLIP control experiment on K562 against BUD13

Homo sapiens

8 data files
FileTypeSize
ENCFF068QGD.bam bam (alignments) 718.8 MB
ENCFF102FKE.bam bam (alignments) 745.9 MB
ENCFF239KZT.bigWig bigWig (plus strand signal of unique reads) 33.5 MB
ENCFF333ODQ.bigWig bigWig (plus strand signal of unique reads) 34.8 MB
ENCFF593CTK.fastq fastq (reads) 823.9 MB
ENCFF632UHM.bigWig bigWig (minus strand signal of unique reads) 33.8 MB
ENCFF680TGD.bigWig bigWig (minus strand signal of unique reads) 32.6 MB
ENCFF818MIM.fastq fastq (reads) 876.7 MB
ENCSR810FHY ENCSR · via encode_api

RNA-seq on K562 cells treated with an shRNA knockdown against UPF2. (UPF2_BGKLV21-B)

Homo sapiens

92 data files
FileTypeSize
ENCFF020CNG.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 100.4 MB
ENCFF021FBV.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF027UUU.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 107.8 MB
ENCFF063CBX.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 85.7 MB
ENCFF077KWZ.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 5.3 GB
ENCFF081NXV.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 88.3 MB
ENCFF116UZG.bam bam (alignments); assembly: hg19; genome annotation: V19 3.3 GB
ENCFF130MNN.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 5.3 GB
ENCFF145XGQ.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 96.7 MB
ENCFF156CJJ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 95.7 MB
ENCFF182AMB.bam bam (alignments); assembly: hg19; genome annotation: V19 4.3 GB
ENCFF186PXP.fastq fastq (reads) 2.4 GB
ENCFF199ZWW.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF204KSY.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 4.0 MB
ENCFF215DZO.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF219IQC.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 91.5 MB
ENCFF222PEE.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 90.8 MB
ENCFF231SCI.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 88.2 MB
ENCFF240URE.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 82.6 MB
ENCFF261PXK.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF281NTB.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.4 MB
ENCFF282FXJ.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 84.5 MB
ENCFF282ZUP.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 5.5 MB
ENCFF289HXW.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF302XGD.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 5.4 GB
ENCFF309EVO.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 83.0 MB
ENCFF311QJP.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.8 MB
ENCFF327TCW.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 106.3 MB
ENCFF335GYQ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 90.7 MB
ENCFF345BGU.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.3 GB
ENCFF350RAC.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 95.1 MB
ENCFF370MSX.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 4.8 MB
ENCFF371GCK.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.9 MB
ENCFF397BWB.bam bam (alignments); assembly: hg19; genome annotation: V19 3.4 GB
ENCFF406LCB.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 89.8 MB
ENCFF413UPC.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 101.7 MB
ENCFF417DDZ.bam bam (alignments); assembly: hg19; genome annotation: V19 3.4 GB
ENCFF459FEX.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 94.4 MB
ENCFF477PXW.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.4 GB
ENCFF495VJK.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 106.3 MB
ENCFF504GEQ.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF505YOD.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.5 GB
ENCFF513SVU.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.5 MB
ENCFF534YWO.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF540RZW.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 99.5 MB
ENCFF545EJL.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 5.3 GB
ENCFF560XAB.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 6.2 GB
ENCFF567TFK.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF583XQP.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.2 GB
ENCFF592LBR.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 95.8 MB
ENCFF594CMO.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 87.9 MB
ENCFF601LGH.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 101.6 MB
ENCFF616LII.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 17.0 MB
ENCFF619UFX.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 87.7 MB
ENCFF636NUC.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 93.1 MB
ENCFF637MRZ.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.7 MB
ENCFF650FWW.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 87.6 MB
ENCFF670PZQ.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 93.2 MB
ENCFF671ETA.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.3 MB
ENCFF677NCC.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 93.1 MB
ENCFF689BNS.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 100.3 MB
ENCFF697NZP.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.5 MB
ENCFF709CYO.bam bam (alignments); assembly: GRCh38; genome annotation: V29 4.2 GB
ENCFF724HZR.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 88.7 MB
ENCFF725YET.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 97.2 MB
ENCFF728NYQ.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 98.1 MB
ENCFF739IRO.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 80.3 MB
ENCFF755RMR.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 107.1 MB
ENCFF763IGM.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 96.2 MB
ENCFF779RLG.bam bam (alignments); assembly: hg19; genome annotation: V19 4.1 GB
ENCFF783WAW.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 89.4 MB
ENCFF786LVQ.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 82.7 MB
ENCFF828IFS.bam bam (alignments); assembly: GRCh38; genome annotation: V29 4.4 GB
ENCFF829PHK.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 4.2 MB
ENCFF839OSJ.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF864RVN.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 96.9 MB
ENCFF865OER.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 90.6 MB
ENCFF870TKH.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 107.8 MB
ENCFF892SIK.fastq fastq (reads) 2.3 GB
ENCFF900RBC.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 105.5 MB
ENCFF901VVJ.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 90.0 MB
ENCFF920QRD.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 94.5 MB
ENCFF938PYH.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 90.7 MB
ENCFF941MVX.fastq fastq (reads) 2.3 GB
ENCFF942JPV.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF944VLT.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 89.2 MB
ENCFF949APM.fastq fastq (reads) 2.4 GB
ENCFF967QZR.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 6.1 GB
ENCFF970WIS.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 98.2 MB
ENCFF974HAM.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 88.5 MB
ENCFF979KZZ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 85.1 MB
ENCFF990XTX.bam bam (alignments); assembly: hg19; genome annotation: V19 3.3 GB
ENCSR874ZLI ENCSR · via encode_api

RNA-seq on K562 cells treated with an shRNA knockdown against CCDC124. (CCDC124_BGKLV32)

Homo sapiens

92 data files
FileTypeSize
ENCFF014XSH.bigWig bigWig (plus strand signal of unique reads) 105.4 MB
ENCFF019YLP.bigWig bigWig (plus strand signal of unique reads) 101.3 MB
ENCFF023LOM.tar tar (differential splicing quantifications) 5.3 MB
ENCFF024AII.bigWig bigWig (plus strand signal of all reads) 116.6 MB
ENCFF029FKR.tsv tsv (transcript quantifications) 29.9 MB
ENCFF034NSA.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF045ZOF.bam bam (alignments) 7.2 GB
ENCFF052GBL.bigWig bigWig (plus strand signal of all reads) 103.7 MB
ENCFF055IXT.tsv tsv (differential expression quantifications) 2.0 MB
ENCFF062LPX.tsv tsv (gene quantifications) 9.1 MB
ENCFF063QOR.bigWig bigWig (minus strand signal of all reads) 111.7 MB
ENCFF065NJW.bigWig bigWig (minus strand signal of all reads) 97.1 MB
ENCFF087NRV.tsv tsv (transcript quantifications) 25.4 MB
ENCFF091NRS.bigWig bigWig (plus strand signal of unique reads) 101.3 MB
ENCFF119RYM.tsv tsv (gene quantifications) 9.5 MB
ENCFF146KRK.tsv tsv (gene quantifications) 10.4 MB
ENCFF161DZU.tsv tsv (transcript quantifications) 29.9 MB
ENCFF176QTQ.tsv tsv (differential expression quantifications) 5.7 MB
ENCFF201JMI.bigWig bigWig (minus strand signal of unique reads) 103.1 MB
ENCFF207RZR.bam bam (transcriptome alignments) 9.6 GB
ENCFF208ODQ.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF218TZW.bam bam (alignments) 5.8 GB
ENCFF249LPC.tsv tsv (gene quantifications) 9.1 MB
ENCFF253YIE.bigWig bigWig (minus strand signal of all reads) 101.2 MB
ENCFF257YAN.tsv tsv (transcript quantifications) 27.5 MB
ENCFF262UOZ.bigWig bigWig (plus strand signal of unique reads) 94.4 MB
ENCFF267JDT.tsv tsv (differential expression quantifications) 4.4 MB
ENCFF273TRS.bam bam (alignments) 5.4 GB
ENCFF277PTE.bigWig bigWig (plus strand signal of all reads) 119.0 MB
ENCFF282ESG.bam bam (transcriptome alignments) 8.6 GB
ENCFF286YII.bigWig bigWig (plus strand signal of all reads) 106.0 MB
ENCFF297MMF.bigWig bigWig (plus strand signal of unique reads) 97.9 MB
ENCFF300ZGQ.bigWig bigWig (minus strand signal of all reads) 101.8 MB
ENCFF312FID.bigWig bigWig (plus strand signal of all reads) 102.9 MB
ENCFF323NLX.bigWig bigWig (minus strand signal of all reads) 115.1 MB
ENCFF335PXZ.tsv tsv (transcript quantifications) 24.9 MB
ENCFF344SLU.bam bam (alignments) 6.7 GB
ENCFF355BBF.tsv tsv (transcript quantifications) 25.4 MB
ENCFF358BQS.tsv tsv (transcript quantifications) 27.5 MB
ENCFF364SXX.tsv tsv (transcript quantifications) 24.9 MB
ENCFF369SHP.bigWig bigWig (minus strand signal of unique reads) 98.1 MB
ENCFF385UCY.bam bam (alignments) 5.4 GB
ENCFF406AEY.bigWig bigWig (minus strand signal of unique reads) 102.1 MB
ENCFF428ZWT.bigWig bigWig (minus strand signal of all reads) 117.6 MB
ENCFF436ATY.tsv tsv (gene quantifications) 10.4 MB
ENCFF439HGH.bigWig bigWig (minus strand signal of unique reads) 92.7 MB
ENCFF456MMQ.bigWig bigWig (minus strand signal of all reads) 117.6 MB
ENCFF513PEZ.tar tar (differential splicing quantifications) 4.2 MB
ENCFF521CZO.bam bam (alignments) 5.4 GB
ENCFF529ORZ.bigWig bigWig (plus strand signal of unique reads) 102.1 MB
ENCFF531UVS.bigWig bigWig (plus strand signal of all reads) 100.1 MB
ENCFF542FJG.bigWig bigWig (plus strand signal of unique reads) 95.2 MB
ENCFF554YPW.bigWig bigWig (minus strand signal of unique reads) 92.1 MB
ENCFF561KWV.bigWig bigWig (plus strand signal of unique reads) 100.2 MB
ENCFF603AIP.bigWig bigWig (minus strand signal of all reads) 104.1 MB
ENCFF628BJL.bigWig bigWig (plus strand signal of unique reads) 97.7 MB
ENCFF637GHJ.bigWig bigWig (minus strand signal of unique reads) 88.5 MB
ENCFF647LIH.fastq fastq (reads) 3.6 GB
ENCFF659QIV.bigWig bigWig (plus strand signal of all reads) 98.9 MB
ENCFF661CVY.fastq fastq (reads) 3.9 GB
ENCFF674XFP.bigWig bigWig (plus strand signal of all reads) 113.6 MB
ENCFF678DNR.bam bam (alignments) 6.7 GB
ENCFF678FGS.bigWig bigWig (minus strand signal of all reads) 112.4 MB
ENCFF692JXI.bigWig bigWig (minus strand signal of unique reads) 99.2 MB
ENCFF693XLW.bam bam (alignments) 6.5 GB
ENCFF699CFB.bam bam (alignments) 7.2 GB
ENCFF700DTE.bigWig bigWig (minus strand signal of all reads) 102.4 MB
ENCFF706IEP.bigWig bigWig (minus strand signal of unique reads) 91.6 MB
ENCFF738UKP.bigWig bigWig (plus strand signal of all reads) 113.1 MB
ENCFF740YCR.bigWig bigWig (plus strand signal of unique reads) 104.6 MB
ENCFF781GTI.bigWig bigWig (plus strand signal of all reads) 119.1 MB
ENCFF783UBE.bigWig bigWig (plus strand signal of unique reads) 93.5 MB
ENCFF792NMG.bigWig bigWig (minus strand signal of unique reads) 99.9 MB
ENCFF796CYG.tar tar (differential splicing quantifications) 18.0 MB
ENCFF800WLH.bigWig bigWig (plus strand signal of unique reads) 90.8 MB
ENCFF821LRT.bigWig bigWig (minus strand signal of unique reads) 98.9 MB
ENCFF839KNW.fastq fastq (reads) 3.6 GB
ENCFF863HKY.bigWig bigWig (plus strand signal of all reads) 103.8 MB
ENCFF877YQW.bigWig bigWig (plus strand signal of all reads) 113.6 MB
ENCFF881LCJ.bigWig bigWig (minus strand signal of all reads) 98.8 MB
ENCFF883SAJ.bigWig bigWig (minus strand signal of all reads) 112.4 MB
ENCFF894MMN.bam bam (alignments) 5.8 GB
ENCFF899JIX.bam bam (transcriptome alignments) 7.6 GB
ENCFF901EHK.bigWig bigWig (minus strand signal of unique reads) 95.2 MB
ENCFF902CCM.bigWig bigWig (minus strand signal of unique reads) 95.8 MB
ENCFF908ZLY.bam bam (alignments) 5.9 GB
ENCFF913KLQ.bam bam (transcriptome alignments) 8.4 GB
ENCFF914DSS.fastq fastq (reads) 4.0 GB
ENCFF918YUF.tsv tsv (gene quantifications) 9.5 MB
ENCFF950KEU.bam bam (transcriptome alignments) 8.5 GB
ENCFF975SSJ.bam bam (transcriptome alignments) 7.6 GB
ENCFF990XLG.bam bam (alignments) 7.0 GB
ENCSR837QDN ENCSR · via encode_api

RNA-seq on HepG2 cells treated with an shRNA knockdown against SUGP2. (SUGP2_BGHLV27)

Homo sapiens

92 data files
FileTypeSize
ENCFF006XSF.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 89.9 MB
ENCFF026BVU.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.8 MB
ENCFF040YLG.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 98.9 MB
ENCFF053KVX.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 90.8 MB
ENCFF083BZN.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 4.3 MB
ENCFF098KES.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 87.2 MB
ENCFF122JCE.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 82.6 MB
ENCFF167MYT.fastq fastq (reads) 3.6 GB
ENCFF169GPT.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 90.3 MB
ENCFF172APM.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 3.5 MB
ENCFF184TQK.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 92.2 MB
ENCFF204LGR.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 89.3 MB
ENCFF220WUH.fastq fastq (reads) 3.5 GB
ENCFF241ZSP.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 88.8 MB
ENCFF259LFX.fastq fastq (reads) 3.3 GB
ENCFF267PPI.bam bam (alignments); assembly: hg19; genome annotation: V19 4.5 GB
ENCFF269HSI.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 90.3 MB
ENCFF275DYN.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.9 MB
ENCFF276ISI.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 99.1 MB
ENCFF277XYJ.bam bam (alignments); assembly: GRCh38; genome annotation: V29 6.2 GB
ENCFF285KVL.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 8.2 GB
ENCFF294YPZ.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.6 MB
ENCFF300GUU.bam bam (alignments); assembly: GRCh38; genome annotation: V24 6.2 GB
ENCFF314WKY.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 7.6 GB
ENCFF320IIZ.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 85.7 MB
ENCFF330WPX.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 16.5 MB
ENCFF331DPA.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 87.5 MB
ENCFF340LVL.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 102.6 MB
ENCFF345GOM.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.7 GB
ENCFF375BBI.bam bam (alignments); assembly: hg19; genome annotation: V19 4.9 GB
ENCFF380RYA.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.5 MB
ENCFF384IPG.bam bam (alignments); assembly: hg19; genome annotation: V19 4.9 GB
ENCFF385NCP.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 91.7 MB
ENCFF418JYE.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 92.2 MB
ENCFF429TBP.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.4 MB
ENCFF434QDG.bam bam (alignments); assembly: hg19; genome annotation: V19 5.5 GB
ENCFF444ATM.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF445UOB.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 25.0 MB
ENCFF461LRL.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 101.9 MB
ENCFF461TSS.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 88.7 MB
ENCFF494HNY.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF499CMK.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 91.8 MB
ENCFF499VBE.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 102.6 MB
ENCFF526NTI.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF541CIR.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 99.1 MB
ENCFF544QWK.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 88.2 MB
ENCFF548AYH.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 83.5 MB
ENCFF579MJO.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 8.2 GB
ENCFF588HUI.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 7.7 GB
ENCFF595EBE.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 9.3 GB
ENCFF606LKK.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.4 MB
ENCFF622PET.bam bam (alignments); assembly: hg19; genome annotation: V19 6.0 GB
ENCFF624OJV.fastq fastq (reads) 3.3 GB
ENCFF628CPY.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 99.8 MB
ENCFF637PSF.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 85.1 MB
ENCFF651MFV.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 4.2 MB
ENCFF652QRB.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 101.9 MB
ENCFF662VHV.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.4 MB
ENCFF669AAJ.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.9 MB
ENCFF681JJH.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 92.7 MB
ENCFF700BQX.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 99.5 MB
ENCFF701CFH.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 99.9 MB
ENCFF706WEI.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 84.3 MB
ENCFF716BPQ.bam bam (alignments); assembly: hg19; genome annotation: V19 4.5 GB
ENCFF725FGD.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 5.6 MB
ENCFF761PTJ.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 94.9 MB
ENCFF767RDF.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 93.6 MB
ENCFF797PKX.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 82.0 MB
ENCFF806ARA.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF823WOW.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 92.9 MB
ENCFF836UAW.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 100.0 MB
ENCFF837JIY.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 94.0 MB
ENCFF838ARB.bam bam (alignments); assembly: GRCh38; genome annotation: V24 5.9 GB
ENCFF841FHK.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.9 MB
ENCFF847SGH.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 25.0 MB
ENCFF860TKV.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 90.1 MB
ENCFF874FDT.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 89.6 MB
ENCFF887FLG.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 90.8 MB
ENCFF895JAB.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 99.3 MB
ENCFF919UYI.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 86.2 MB
ENCFF941VXO.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 8.7 GB
ENCFF945BDD.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 86.4 MB
ENCFF947TAD.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 89.3 MB
ENCFF948ZDX.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 91.4 MB
ENCFF950SHP.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.4 MB
ENCFF952NFS.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.5 MB
ENCFF960IJT.bam bam (alignments); assembly: GRCh38; genome annotation: V29 5.9 GB
ENCFF963FTP.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 90.8 MB
ENCFF965FRA.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 89.1 MB
ENCFF971KHQ.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 91.0 MB
ENCFF984YAD.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 86.7 MB
ENCFF989TRB.bam bam (alignments); assembly: GRCh38; genome annotation: V24 5.1 GB
ENCSR775TMW ENCSR · via encode_api

RNA-seq on K562 cells treated with an shRNA knockdown against BOP1. (BOP1_BGKLV36)

Homo sapiens

92 data files
FileTypeSize
ENCFF010ORX.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 7.2 GB
ENCFF018KJO.bam bam (alignments); assembly: GRCh38; genome annotation: V24 5.8 GB
ENCFF025JTP.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF027SHF.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 81.6 MB
ENCFF030GDC.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 96.5 MB
ENCFF037EWL.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 84.0 MB
ENCFF038DQH.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 65.0 MB
ENCFF038OCN.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 67.4 MB
ENCFF053GDZ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 74.4 MB
ENCFF054JWT.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 3.9 MB
ENCFF062VAY.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 7.1 GB
ENCFF115UXN.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 85.1 MB
ENCFF116QJY.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF122JCW.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 72.8 MB
ENCFF146CWN.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 6.3 GB
ENCFF157GCW.bam bam (alignments); assembly: hg19; genome annotation: V19 4.8 GB
ENCFF184TLK.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 82.6 MB
ENCFF196RBP.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF197WED.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 83.9 MB
ENCFF214XOT.bam bam (alignments); assembly: hg19; genome annotation: V19 4.7 GB
ENCFF239FYU.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 66.3 MB
ENCFF242WKZ.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 83.5 MB
ENCFF266IWF.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.9 MB
ENCFF288POC.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 6.3 GB
ENCFF289RVL.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 85.5 MB
ENCFF290ERZ.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 84.1 MB
ENCFF303EIK.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 6.3 GB
ENCFF306IWV.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 72.5 MB
ENCFF316VDX.bam bam (alignments); assembly: GRCh38; genome annotation: V29 5.7 GB
ENCFF331IEA.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.0 MB
ENCFF341HCV.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 94.7 MB
ENCFF360KNI.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 74.5 MB
ENCFF361YOH.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 84.1 MB
ENCFF371ZHF.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 5.5 MB
ENCFF379TNL.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 80.0 MB
ENCFF389BBB.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 84.2 MB
ENCFF393SNH.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 66.1 MB
ENCFF459PBA.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 82.9 MB
ENCFF464LNB.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 85.1 MB
ENCFF478ZAK.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 97.6 MB
ENCFF480SPL.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.8 GB
ENCFF488KJM.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 74.1 MB
ENCFF514OFG.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 74.7 MB
ENCFF519TPH.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 72.0 MB
ENCFF553ZHL.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.4 MB
ENCFF555BIS.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 95.8 MB
ENCFF575ZQH.bam bam (alignments); assembly: GRCh38; genome annotation: V29 5.8 GB
ENCFF577GMG.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 6.2 GB
ENCFF601DBP.fastq fastq (reads) 3.1 GB
ENCFF604GYI.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 76.6 MB
ENCFF612VSX.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.4 MB
ENCFF615JAK.fastq fastq (reads) 3.2 GB
ENCFF616RAK.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 67.9 MB
ENCFF639SDW.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 78.5 MB
ENCFF645VAW.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 97.6 MB
ENCFF667YQE.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.7 MB
ENCFF673AMR.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 73.4 MB
ENCFF683NMT.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 73.1 MB
ENCFF693MTC.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 69.6 MB
ENCFF695VTE.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 3.3 MB
ENCFF706COO.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.4 MB
ENCFF712YNZ.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 96.5 MB
ENCFF718QJT.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 78.4 MB
ENCFF719GLJ.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 25.0 MB
ENCFF729RRL.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 71.2 MB
ENCFF746BCE.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.6 MB
ENCFF749SMC.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 4.4 MB
ENCFF765WTC.fastq fastq (reads) 3.2 GB
ENCFF784JEZ.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 76.6 MB
ENCFF785XEW.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF800QNN.bam bam (alignments); assembly: hg19; genome annotation: V19 4.8 GB
ENCFF802FGD.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 70.9 MB
ENCFF815HIW.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 78.0 MB
ENCFF823XUG.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 25.0 MB
ENCFF828GSV.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.4 MB
ENCFF848KHW.bam bam (alignments); assembly: hg19; genome annotation: V19 5.6 GB
ENCFF851LDS.bam bam (alignments); assembly: hg19; genome annotation: V19 4.7 GB
ENCFF853CRX.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 13.7 MB
ENCFF855FYZ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 86.1 MB
ENCFF873XJD.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 63.3 MB
ENCFF921PUO.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.7 GB
ENCFF925JKZ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 74.2 MB
ENCFF927GLX.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 85.7 MB
ENCFF938TLJ.bam bam (alignments); assembly: hg19; genome annotation: V19 5.7 GB
ENCFF941CFT.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 84.0 MB
ENCFF951BEY.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.9 MB
ENCFF951MYQ.bam bam (alignments); assembly: GRCh38; genome annotation: V24 5.7 GB
ENCFF981TFA.fastq fastq (reads) 3.2 GB
ENCFF992TTW.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 85.1 MB
ENCFF992UCH.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.5 MB
ENCFF996QLH.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.5 MB
ENCFF997BUE.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 72.7 MB
ENCSR810JYX ENCSR · via encode_api

RNA-seq on HepG2 cells treated with an shRNA knockdown against SUCLG1. (SUCLG1-BGHLV23)

Homo sapiens

92 data files
FileTypeSize
ENCFF004HUW.bam bam (alignments); assembly: hg19; genome annotation: V19 4.3 GB
ENCFF021CUH.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.5 MB
ENCFF026TOF.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 3.0 MB
ENCFF027QQV.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 97.8 MB
ENCFF037OOG.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 87.3 MB
ENCFF040XPE.bam bam (alignments); assembly: GRCh38; genome annotation: V24 6.1 GB
ENCFF049ETC.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 79.8 MB
ENCFF068VAP.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 73.3 MB
ENCFF072SUV.fastq fastq (reads) 2.8 GB
ENCFF109KQS.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 88.4 MB
ENCFF113MXC.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 82.3 MB
ENCFF114XFA.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 6.3 GB
ENCFF136VNR.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 86.2 MB
ENCFF148OPW.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 75.8 MB
ENCFF151XTX.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 85.4 MB
ENCFF167COS.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.4 MB
ENCFF180LGZ.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 83.2 MB
ENCFF183SZW.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 97.3 MB
ENCFF186WNP.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 18.1 MB
ENCFF196DXD.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 80.6 MB
ENCFF204SHY.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 90.0 MB
ENCFF206ULK.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 75.7 MB
ENCFF213BSN.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 77.4 MB
ENCFF218JVC.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 90.3 MB
ENCFF233VVZ.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.4 MB
ENCFF237YUH.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF250DLK.bam bam (alignments); assembly: hg19; genome annotation: V19 5.9 GB
ENCFF257ZXM.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 89.7 MB
ENCFF264CAW.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 79.8 MB
ENCFF275CWH.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 88.4 MB
ENCFF283UYI.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 81.0 MB
ENCFF288OTD.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF293NFU.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 8.3 GB
ENCFF310HJT.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 6.3 GB
ENCFF317HFN.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 99.2 MB
ENCFF324HFY.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 4.5 MB
ENCFF335JKM.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 89.4 MB
ENCFF346DRN.bam bam (alignments); assembly: hg19; genome annotation: V19 5.1 GB
ENCFF358ESG.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 90.3 MB
ENCFF360QHO.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 79.3 MB
ENCFF394JZQ.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 83.1 MB
ENCFF407FAF.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 7.4 GB
ENCFF407VIG.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 82.3 MB
ENCFF425RNQ.bam bam (alignments); assembly: GRCh38; genome annotation: V29 6.1 GB
ENCFF461WUG.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 90.2 MB
ENCFF466FAT.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF476HXE.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 81.5 MB
ENCFF502KGK.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 99.3 MB
ENCFF505PKD.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 87.7 MB
ENCFF510XYI.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 99.5 MB
ENCFF518BID.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 81.2 MB
ENCFF519DOO.bam bam (alignments); assembly: hg19; genome annotation: V19 4.3 GB
ENCFF548FWY.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.5 MB
ENCFF557HBQ.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.7 MB
ENCFF574MLL.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 79.8 MB
ENCFF584IWV.bam bam (alignments); assembly: GRCh38; genome annotation: V24 5.2 GB
ENCFF598ZMR.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF599XKL.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.4 GB
ENCFF607PWH.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 5.7 MB
ENCFF628INY.bam bam (alignments); assembly: hg19; genome annotation: V19 5.1 GB
ENCFF630MZI.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 78.7 MB
ENCFF659LRC.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 3.8 MB
ENCFF660TEW.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF676KSM.fastq fastq (reads) 2.7 GB
ENCFF690IGS.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 4.8 MB
ENCFF699OGP.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF704JGS.bam bam (alignments); assembly: hg19; genome annotation: V19 5.0 GB
ENCFF714MHD.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 82.3 MB
ENCFF721IQK.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 97.5 MB
ENCFF721ZYD.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF724WAM.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 78.1 MB
ENCFF742KNL.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 87.5 MB
ENCFF772MAK.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 7.4 GB
ENCFF775OAL.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF803PTE.bam bam (alignments); assembly: GRCh38; genome annotation: V24 5.2 GB
ENCFF805LLM.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 7.1 GB
ENCFF807KLA.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 88.0 MB
ENCFF818DEN.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF818XBZ.fastq fastq (reads) 3.2 GB
ENCFF829XKD.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 75.2 MB
ENCFF830WNT.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 90.2 MB
ENCFF831EPM.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 92.4 MB
ENCFF837CMB.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 90.3 MB
ENCFF844AQL.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 87.6 MB
ENCFF876MMB.fastq fastq (reads) 3.3 GB
ENCFF896CSD.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 84.1 MB
ENCFF919VWD.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF925OYQ.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 83.6 MB
ENCFF952PIO.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 88.4 MB
ENCFF967HHW.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 90.1 MB
ENCFF998HGW.bam bam (alignments); assembly: GRCh38; genome annotation: V29 5.2 GB
ENCFF998QCH.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.0 MB
ENCSR778RWJ ENCSR · via encode_api

RNA-seq on HepG2 cells treated with an shRNA knockdown against XPO5. (XPO5-BGHLV22)

Homo sapiens

92 data files
FileTypeSize
ENCFF020PJN.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 72.8 MB
ENCFF034UVJ.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 74.5 MB
ENCFF042EVS.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF045PJY.bam bam (alignments); assembly: hg19; genome annotation: V19 3.5 GB
ENCFF045XSD.fastq fastq (reads) 2.7 GB
ENCFF055NEO.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 66.0 MB
ENCFF077LRW.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 5.6 GB
ENCFF093JAD.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 67.2 MB
ENCFF099ZHQ.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.2 GB
ENCFF101ODC.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.3 MB
ENCFF137GLC.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 58.4 MB
ENCFF139QDM.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 61.3 MB
ENCFF165DCC.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 80.3 MB
ENCFF191FGO.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 71.3 MB
ENCFF201AQU.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 66.3 MB
ENCFF234HPE.bam bam (alignments); assembly: hg19; genome annotation: V19 4.0 GB
ENCFF271HLS.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 72.8 MB
ENCFF295ARL.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 5.0 GB
ENCFF295LUA.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 72.4 MB
ENCFF297DIT.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 5.5 MB
ENCFF302LAP.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 73.9 MB
ENCFF304EAY.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 65.0 MB
ENCFF306WNR.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 64.3 MB
ENCFF338KOO.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 6.1 GB
ENCFF362DEQ.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.6 GB
ENCFF371GPL.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 70.7 MB
ENCFF372KHT.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF377ZMZ.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 68.2 MB
ENCFF384UPS.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 72.4 MB
ENCFF386NUM.bam bam (alignments); assembly: hg19; genome annotation: V19 4.9 GB
ENCFF398SFF.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF400DBP.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 62.4 MB
ENCFF403XXY.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 72.8 MB
ENCFF452FQC.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 71.9 MB
ENCFF474LNF.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.4 GB
ENCFF487YJF.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 5.0 GB
ENCFF497LEB.fastq fastq (reads) 2.2 GB
ENCFF524LNK.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF527PQY.fastq fastq (reads) 2.6 GB
ENCFF537JWQ.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.9 MB
ENCFF563GIT.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 81.6 MB
ENCFF572VOH.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF574KOU.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 73.9 MB
ENCFF580HEE.bam bam (alignments); assembly: hg19; genome annotation: V19 4.2 GB
ENCFF588CER.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF604CLL.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 59.9 MB
ENCFF611HHN.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.8 MB
ENCFF628WWU.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 15.3 MB
ENCFF641RKM.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 6.8 GB
ENCFF643YVK.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 73.9 MB
ENCFF662BLE.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF673JAZ.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 64.3 MB
ENCFF685IAI.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 81.2 MB
ENCFF685OGF.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 73.4 MB
ENCFF689LPK.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.2 MB
ENCFF689QYX.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 80.6 MB
ENCFF703DYL.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 3.6 MB
ENCFF704EQB.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF714KSQ.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 63.4 MB
ENCFF740IHR.fastq fastq (reads) 2.2 GB
ENCFF744TPE.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 68.4 MB
ENCFF746ALY.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 6.1 GB
ENCFF749RVH.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 71.9 MB
ENCFF750EKS.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 72.1 MB
ENCFF782NCA.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF783CRM.bam bam (alignments); assembly: hg19; genome annotation: V19 4.2 GB
ENCFF789QAF.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 81.6 MB
ENCFF792ASG.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 65.2 MB
ENCFF818UWL.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 71.9 MB
ENCFF829TMK.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 80.5 MB
ENCFF834CTT.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 65.6 MB
ENCFF836ELS.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 64.3 MB
ENCFF859TUX.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 60.0 MB
ENCFF892FTD.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 68.0 MB
ENCFF893VCB.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 3.0 MB
ENCFF897WAC.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF900RRH.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 60.8 MB
ENCFF904EUO.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 65.6 MB
ENCFF907SHH.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 4.3 MB
ENCFF907UDB.bam bam (alignments); assembly: GRCh38; genome annotation: V29 4.2 GB
ENCFF919NBJ.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.9 MB
ENCFF932RFN.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 59.7 MB
ENCFF953ZTM.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF954OBF.bam bam (alignments); assembly: GRCh38; genome annotation: V24 5.1 GB
ENCFF960PCA.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 69.7 MB
ENCFF964JJA.bam bam (alignments); assembly: hg19; genome annotation: V19 3.5 GB
ENCFF967HBZ.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 72.0 MB
ENCFF972RMD.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 65.2 MB
ENCFF973GYX.bam bam (alignments); assembly: GRCh38; genome annotation: V29 5.1 GB
ENCFF980NGV.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 63.9 MB
ENCFF986MHC.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF994YMQ.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 72.3 MB
ENCSR547NWD ENCSR · via encode_api

shRNA knockdown against AARS in HepG2 cells followed by RNA-seq. (AARS_BGHLV17)

Homo sapiens

92 data files
FileTypeSize
ENCFF006YTQ.bigWig bigWig (minus strand signal of all reads) 90.5 MB
ENCFF014EJI.bigWig bigWig (minus strand signal of unique reads) 87.0 MB
ENCFF026ZLX.tar tar (differential splicing quantifications) 16.6 MB
ENCFF036KPI.bam bam (alignments) 5.0 GB
ENCFF047DBL.bam bam (transcriptome alignments) 6.8 GB
ENCFF051YHF.bigWig bigWig (plus strand signal of unique reads) 77.0 MB
ENCFF070AFX.bigWig bigWig (minus strand signal of all reads) 88.7 MB
ENCFF087JME.bigWig bigWig (minus strand signal of unique reads) 74.8 MB
ENCFF094QED.bigWig bigWig (plus strand signal of unique reads) 89.5 MB
ENCFF111YZJ.bam bam (alignments) 4.2 GB
ENCFF141KBV.bigWig bigWig (plus strand signal of all reads) 104.0 MB
ENCFF159HQA.bigWig bigWig (plus strand signal of unique reads) 86.8 MB
ENCFF189JNC.tsv tsv (differential expression quantifications) 2.8 MB
ENCFF195XPH.bigWig bigWig (minus strand signal of all reads) 93.6 MB
ENCFF217JKC.bigWig bigWig (plus strand signal of all reads) 81.7 MB
ENCFF218AUD.bigWig bigWig (minus strand signal of unique reads) 75.0 MB
ENCFF220BHP.bigWig bigWig (minus strand signal of all reads) 78.2 MB
ENCFF236QPJ.tsv tsv (transcript quantifications) 27.4 MB
ENCFF237WTD.bigWig bigWig (plus strand signal of unique reads) 89.8 MB
ENCFF255RNW.bam bam (alignments) 5.5 GB
ENCFF261UIZ.bigWig bigWig (plus strand signal of all reads) 95.0 MB
ENCFF265KFK.bigWig bigWig (plus strand signal of all reads) 90.4 MB
ENCFF269UEY.bigWig bigWig (plus strand signal of unique reads) 82.1 MB
ENCFF275DLV.bam bam (alignments) 5.5 GB
ENCFF279AWP.bigWig bigWig (plus strand signal of unique reads) 81.7 MB
ENCFF292QGQ.bigWig bigWig (minus strand signal of unique reads) 79.4 MB
ENCFF321GMI.bam bam (transcriptome alignments) 9.3 GB
ENCFF329SHK.bam bam (transcriptome alignments) 6.0 GB
ENCFF348JTL.bigWig bigWig (plus strand signal of all reads) 82.4 MB
ENCFF353IKF.tsv tsv (transcript quantifications) 24.9 MB
ENCFF359DJN.bam bam (alignments) 4.8 GB
ENCFF373FXV.bigWig bigWig (minus strand signal of unique reads) 79.8 MB
ENCFF380GXW.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF401CYK.bigWig bigWig (minus strand signal of unique reads) 87.1 MB
ENCFF409NNR.bam bam (alignments) 5.6 GB
ENCFF420QTH.tsv tsv (differential expression quantifications) 4.1 MB
ENCFF464UID.fastq fastq (reads) 2.6 GB
ENCFF488SPX.fastq fastq (reads) 2.7 GB
ENCFF499YCP.fastq fastq (reads) 3.7 GB
ENCFF512BFV.bigWig bigWig (plus strand signal of unique reads) 82.7 MB
ENCFF526KHZ.bigWig bigWig (plus strand signal of all reads) 104.2 MB
ENCFF530DUY.tsv tsv (gene quantifications) 9.1 MB
ENCFF530XAX.bigWig bigWig (minus strand signal of unique reads) 72.9 MB
ENCFF540GHS.bigWig bigWig (minus strand signal of unique reads) 84.1 MB
ENCFF555AMB.tar tar (differential splicing quantifications) 4.2 MB
ENCFF569FYO.bigWig bigWig (minus strand signal of unique reads) 93.3 MB
ENCFF574GLC.bigWig bigWig (plus strand signal of all reads) 80.0 MB
ENCFF586UOJ.bigWig bigWig (minus strand signal of all reads) 88.7 MB
ENCFF604SNM.bam bam (alignments) 4.1 GB
ENCFF617SFH.bigWig bigWig (minus strand signal of unique reads) 93.3 MB
ENCFF619IOX.bam bam (alignments) 6.7 GB
ENCFF623DPO.bigWig bigWig (minus strand signal of all reads) 103.0 MB
ENCFF630UDA.tsv tsv (transcript quantifications) 25.3 MB
ENCFF653SHV.tsv tsv (transcript quantifications) 29.8 MB
ENCFF661GPT.tsv tsv (gene quantifications) 9.5 MB
ENCFF664GRA.bam bam (transcriptome alignments) 8.2 GB
ENCFF676OPY.bigWig bigWig (plus strand signal of unique reads) 77.1 MB
ENCFF690BOE.tsv tsv (transcript quantifications) 24.9 MB
ENCFF693JHD.bigWig bigWig (minus strand signal of all reads) 102.2 MB
ENCFF694OHM.bigWig bigWig (plus strand signal of all reads) 104.8 MB
ENCFF711AUU.bam bam (transcriptome alignments) 6.0 GB
ENCFF716HRO.bigWig bigWig (plus strand signal of all reads) 89.9 MB
ENCFF739CVP.tsv tsv (gene quantifications) 9.1 MB
ENCFF740ZGM.bigWig bigWig (plus strand signal of unique reads) 96.0 MB
ENCFF749HSR.bigWig bigWig (minus strand signal of all reads) 93.1 MB
ENCFF761RUX.tsv tsv (transcript quantifications) 27.4 MB
ENCFF764OXU.bigWig bigWig (minus strand signal of all reads) 88.4 MB
ENCFF767CND.bigWig bigWig (minus strand signal of all reads) 80.1 MB
ENCFF785GFF.bam bam (transcriptome alignments) 8.3 GB
ENCFF786JYQ.tsv tsv (gene quantifications) 10.4 MB
ENCFF788QLG.tsv tsv (differential expression quantifications) 2.0 MB
ENCFF807TEB.bigWig bigWig (plus strand signal of all reads) 95.7 MB
ENCFF809IPD.bam bam (alignments) 6.5 GB
ENCFF814UZJ.bigWig bigWig (plus strand signal of unique reads) 75.3 MB
ENCFF832PFA.bigWig bigWig (plus strand signal of all reads) 90.4 MB
ENCFF838LZH.tsv tsv (gene quantifications) 9.4 MB
ENCFF850KBA.bigWig bigWig (minus strand signal of unique reads) 93.3 MB
ENCFF851XYX.bigWig bigWig (minus strand signal of unique reads) 80.3 MB
ENCFF862RDS.bigWig bigWig (plus strand signal of all reads) 92.6 MB
ENCFF869MFC.bigWig bigWig (plus strand signal of unique reads) 96.0 MB
ENCFF872LYS.tsv tsv (gene quantifications) 10.4 MB
ENCFF874PEK.bigWig bigWig (plus strand signal of unique reads) 96.1 MB
ENCFF891DPL.bam bam (alignments) 5.0 GB
ENCFF891OBS.tsv tsv (transcript quantifications) 29.8 MB
ENCFF908YJO.bigWig bigWig (minus strand signal of all reads) 80.6 MB
ENCFF937RSQ.tsv tsv (differential expression quantifications) 5.5 MB
ENCFF942QQQ.tar tar (differential splicing quantifications) 3.6 MB
ENCFF950IJN.fastq fastq (reads) 3.6 GB
ENCFF954VWL.tsv tsv (transcript quantifications) 25.3 MB
ENCFF955OIQ.bam bam (alignments) 4.1 GB
ENCFF964OHS.bam bam (alignments) 6.7 GB
ENCFF970LJX.bigWig bigWig (minus strand signal of all reads) 102.0 MB
ENCSR342EDG ENCSR · via encode_api

shRNA knockdown against U2AF1 in K562 cells followed by RNA-seq. (U2AF1-LV08)

Homo sapiens

92 data files
FileTypeSize
ENCFF010BKS.bigWig bigWig (minus strand signal of unique reads) 80.7 MB
ENCFF011FSV.bigWig bigWig (minus strand signal of all reads) 82.7 MB
ENCFF033CDK.bam bam (alignments) 3.5 GB
ENCFF048WLT.bam bam (transcriptome alignments) 4.1 GB
ENCFF049UBT.fastq fastq (reads) 2.2 GB
ENCFF049WEE.bam bam (alignments) 4.1 GB
ENCFF075HTM.bigWig bigWig (plus strand signal of unique reads) 83.3 MB
ENCFF104BVL.bigWig bigWig (minus strand signal of all reads) 90.7 MB
ENCFF118ZUP.tsv tsv (transcript quantifications) 29.8 MB
ENCFF120KAQ.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF121YLS.bam bam (transcriptome alignments) 4.1 GB
ENCFF136YBU.tsv tsv (transcript quantifications) 24.9 MB
ENCFF141MVP.bam bam (alignments) 3.4 GB
ENCFF143FEK.bigWig bigWig (minus strand signal of all reads) 82.7 MB
ENCFF163DSN.bigWig bigWig (minus strand signal of unique reads) 70.9 MB
ENCFF184ITL.bigWig bigWig (plus strand signal of unique reads) 84.3 MB
ENCFF206ODQ.bigWig bigWig (minus strand signal of all reads) 77.7 MB
ENCFF215LUY.tar tar (differential splicing quantifications) 3.3 MB
ENCFF226ZIE.bigWig bigWig (minus strand signal of unique reads) 81.9 MB
ENCFF230NUE.bigWig bigWig (plus strand signal of all reads) 79.7 MB
ENCFF234FVQ.bigWig bigWig (minus strand signal of all reads) 77.7 MB
ENCFF234NYQ.tsv tsv (transcript quantifications) 27.3 MB
ENCFF256BRG.bigWig bigWig (plus strand signal of all reads) 92.4 MB
ENCFF269UED.bigWig bigWig (plus strand signal of unique reads) 83.3 MB
ENCFF278ILO.bigWig bigWig (plus strand signal of unique reads) 80.5 MB
ENCFF293WKB.bigWig bigWig (minus strand signal of all reads) 91.9 MB
ENCFF297GEV.bam bam (transcriptome alignments) 4.1 GB
ENCFF303QAF.bigWig bigWig (minus strand signal of all reads) 93.5 MB
ENCFF309XDW.bigWig bigWig (minus strand signal of unique reads) 77.5 MB
ENCFF323VJB.bigWig bigWig (plus strand signal of all reads) 86.8 MB
ENCFF323XGR.bam bam (alignments) 4.2 GB
ENCFF326OER.tsv tsv (transcript quantifications) 29.8 MB
ENCFF330PUT.tsv tsv (gene quantifications) 9.1 MB
ENCFF344VEU.tsv tsv (gene quantifications) 10.4 MB
ENCFF352HEO.bam bam (alignments) 4.0 GB
ENCFF365IMS.fastq fastq (reads) 2.3 GB
ENCFF365PWI.tsv tsv (transcript quantifications) 24.9 MB
ENCFF373TYZ.bigWig bigWig (plus strand signal of unique reads) 85.1 MB
ENCFF384ZVJ.bigWig bigWig (plus strand signal of unique reads) 73.3 MB
ENCFF387SKB.bigWig bigWig (plus strand signal of all reads) 93.6 MB
ENCFF390YKN.bigWig bigWig (minus strand signal of all reads) 82.1 MB
ENCFF404KPH.tar tar (differential splicing quantifications) 4.1 MB
ENCFF426YHJ.bam bam (alignments) 3.5 GB
ENCFF437VCE.bigWig bigWig (plus strand signal of unique reads) 85.6 MB
ENCFF438IZT.bigWig bigWig (minus strand signal of unique reads) 75.6 MB
ENCFF452JDU.bigWig bigWig (minus strand signal of unique reads) 76.5 MB
ENCFF462PAF.bam bam (alignments) 4.2 GB
ENCFF483EDG.bam bam (transcriptome alignments) 4.6 GB
ENCFF490MYP.bigWig bigWig (minus strand signal of unique reads) 70.9 MB
ENCFF551OHU.tsv tsv (differential expression quantifications) 4.2 MB
ENCFF561LLM.bigWig bigWig (minus strand signal of unique reads) 81.5 MB
ENCFF563MLA.tsv tsv (gene quantifications) 10.4 MB
ENCFF582WUD.tsv tsv (gene quantifications) 9.1 MB
ENCFF612TNR.bam bam (alignments) 4.1 GB
ENCFF629YGZ.bigWig bigWig (plus strand signal of all reads) 95.1 MB
ENCFF633DUC.tsv tsv (gene quantifications) 9.4 MB
ENCFF670ZRN.fastq fastq (reads) 2.2 GB
ENCFF672ABP.bigWig bigWig (plus strand signal of all reads) 93.6 MB
ENCFF678XSH.bigWig bigWig (plus strand signal of all reads) 83.6 MB
ENCFF682RLJ.tsv tsv (transcript quantifications) 25.3 MB
ENCFF707GKG.bam bam (alignments) 3.4 GB
ENCFF724EPK.bigWig bigWig (minus strand signal of unique reads) 80.9 MB
ENCFF725MSZ.fastq fastq (reads) 2.2 GB
ENCFF728YIQ.tar tar (differential splicing quantifications) 12.7 MB
ENCFF729CQK.bigWig bigWig (minus strand signal of unique reads) 81.8 MB
ENCFF732JRP.bam bam (transcriptome alignments) 4.7 GB
ENCFF734AAX.bigWig bigWig (plus strand signal of all reads) 84.7 MB
ENCFF741KHZ.bigWig bigWig (plus strand signal of unique reads) 73.3 MB
ENCFF750CBD.bam bam (alignments) 3.4 GB
ENCFF763PVQ.bigWig bigWig (minus strand signal of all reads) 92.4 MB
ENCFF794VYD.tsv tsv (gene quantifications) 9.4 MB
ENCFF803WEP.bigWig bigWig (plus strand signal of unique reads) 78.9 MB
ENCFF826JDI.tsv tsv (transcript quantifications) 25.3 MB
ENCFF827FJK.bigWig bigWig (plus strand signal of unique reads) 79.7 MB
ENCFF854YPF.bigWig bigWig (plus strand signal of unique reads) 84.4 MB
ENCFF857BEI.bigWig bigWig (plus strand signal of all reads) 95.1 MB
ENCFF861UFQ.bigWig bigWig (minus strand signal of all reads) 91.9 MB
ENCFF878DEU.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF880EBP.bigWig bigWig (plus strand signal of all reads) 94.1 MB
ENCFF880KEP.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF880QCJ.bigWig bigWig (minus strand signal of unique reads) 81.0 MB
ENCFF912ONP.bam bam (alignments) 3.4 GB
ENCFF914ADV.bigWig bigWig (plus strand signal of all reads) 84.2 MB
ENCFF916EJT.tsv tsv (differential expression quantifications) 5.4 MB
ENCFF919WVS.bam bam (alignments) 4.2 GB
ENCFF927RUL.bigWig bigWig (plus strand signal of all reads) 79.6 MB
ENCFF928WXN.bigWig bigWig (minus strand signal of unique reads) 76.5 MB
ENCFF930OTO.tsv tsv (transcript quantifications) 27.3 MB
ENCFF944FMC.bigWig bigWig (plus strand signal of unique reads) 77.8 MB
ENCFF955ZCR.bigWig bigWig (minus strand signal of all reads) 93.5 MB
ENCFF986NRK.bigWig bigWig (minus strand signal of all reads) 84.8 MB
ENCFF992EJT.bam bam (transcriptome alignments) 4.1 GB
ENCSR767WJH ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) mock pulldown control experiment of IGF2BP1/IMP1

1 data file
FileTypeSize
ENCFF002DGH.fastq fastq (reads) 451.0 MB
ENCSR904BCZ ENCSR · via encode_api

shRNA knockdown against RAVER1 in K562 cells followed by RNA-seq. (RAVER1-LV08)

Homo sapiens

92 data files
FileTypeSize
ENCFF014RYG.fastq fastq (reads) 2.3 GB
ENCFF021QWF.tsv tsv (differential expression quantifications) 4.1 MB
ENCFF023GCM.bigWig bigWig (minus strand signal of unique reads) 75.7 MB
ENCFF036EBF.bigWig bigWig (minus strand signal of unique reads) 75.3 MB
ENCFF041PKM.bam bam (alignments) 3.4 GB
ENCFF042VVY.bigWig bigWig (plus strand signal of all reads) 73.9 MB
ENCFF062MDL.fastq fastq (reads) 1.9 GB
ENCFF064PUN.bam bam (transcriptome alignments) 4.0 GB
ENCFF079LKF.bigWig bigWig (plus strand signal of unique reads) 77.0 MB
ENCFF088HUD.bam bam (alignments) 3.5 GB
ENCFF099PGT.bigWig bigWig (minus strand signal of all reads) 82.5 MB
ENCFF117ECG.bigWig bigWig (plus strand signal of unique reads) 73.1 MB
ENCFF121UFF.bigWig bigWig (minus strand signal of unique reads) 81.6 MB
ENCFF126NAN.tar tar (differential splicing quantifications) 12.7 MB
ENCFF131IJN.bigWig bigWig (plus strand signal of unique reads) 77.7 MB
ENCFF136VKM.bigWig bigWig (plus strand signal of unique reads) 72.7 MB
ENCFF137UQE.tsv tsv (gene quantifications) 10.4 MB
ENCFF138EQJ.tsv tsv (differential expression quantifications) 2.8 MB
ENCFF145PVI.tsv tsv (transcript quantifications) 24.9 MB
ENCFF156GQK.tsv tsv (transcript quantifications) 25.3 MB
ENCFF167KJX.bigWig bigWig (plus strand signal of unique reads) 68.5 MB
ENCFF207IOG.bigWig bigWig (minus strand signal of all reads) 91.4 MB
ENCFF215XRB.bigWig bigWig (plus strand signal of all reads) 69.2 MB
ENCFF217NQR.bigWig bigWig (plus strand signal of all reads) 83.5 MB
ENCFF254XEW.bam bam (alignments) 3.6 GB
ENCFF297WKY.fastq fastq (reads) 1.8 GB
ENCFF311XIX.bigWig bigWig (minus strand signal of all reads) 82.5 MB
ENCFF316JKW.tar tar (differential splicing quantifications) 2.9 MB
ENCFF316UCM.bam bam (transcriptome alignments) 4.5 GB
ENCFF317FOF.bigWig bigWig (plus strand signal of all reads) 82.8 MB
ENCFF336OBP.fastq fastq (reads) 2.3 GB
ENCFF373XEU.tsv tsv (differential expression quantifications) 5.4 MB
ENCFF377FQF.tar tar (differential splicing quantifications) 3.3 MB
ENCFF379QCG.tsv tsv (gene quantifications) 9.1 MB
ENCFF387ZEN.bigWig bigWig (minus strand signal of all reads) 83.4 MB
ENCFF401MCY.bigWig bigWig (plus strand signal of unique reads) 83.8 MB
ENCFF414JOA.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF422UUC.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF434WNH.bigWig bigWig (plus strand signal of all reads) 83.6 MB
ENCFF434XKD.bam bam (alignments) 2.9 GB
ENCFF436AHG.bigWig bigWig (plus strand signal of all reads) 74.2 MB
ENCFF478QQA.bam bam (transcriptome alignments) 3.5 GB
ENCFF509TXL.bigWig bigWig (plus strand signal of unique reads) 73.7 MB
ENCFF513DFR.tsv tsv (transcript quantifications) 25.3 MB
ENCFF524ZKI.bigWig bigWig (minus strand signal of all reads) 92.6 MB
ENCFF526APC.tsv tsv (gene quantifications) 9.1 MB
ENCFF548ZUL.bam bam (transcriptome alignments) 4.5 GB
ENCFF552NCI.bigWig bigWig (minus strand signal of all reads) 81.6 MB
ENCFF559GHU.bigWig bigWig (plus strand signal of unique reads) 72.5 MB
ENCFF569OBK.tsv tsv (gene quantifications) 9.4 MB
ENCFF583TLJ.bigWig bigWig (minus strand signal of all reads) 72.5 MB
ENCFF586CXK.bigWig bigWig (minus strand signal of unique reads) 71.6 MB
ENCFF590YPI.bigWig bigWig (minus strand signal of unique reads) 63.0 MB
ENCFF595DIJ.tsv tsv (transcript quantifications) 27.2 MB
ENCFF602KMW.tsv tsv (gene quantifications) 9.4 MB
ENCFF631ZIF.bam bam (transcriptome alignments) 3.6 GB
ENCFF640VJA.bigWig bigWig (plus strand signal of unique reads) 83.3 MB
ENCFF644RBS.bigWig bigWig (plus strand signal of all reads) 79.8 MB
ENCFF659URX.bigWig bigWig (plus strand signal of all reads) 85.0 MB
ENCFF670QGI.bigWig bigWig (minus strand signal of unique reads) 71.4 MB
ENCFF675LSB.bigWig bigWig (minus strand signal of all reads) 92.6 MB
ENCFF675VDK.tsv tsv (transcript quantifications) 27.3 MB
ENCFF682KVB.bam bam (alignments) 2.9 GB
ENCFF683MMD.bigWig bigWig (minus strand signal of unique reads) 66.7 MB
ENCFF704VPV.bam bam (alignments) 3.5 GB
ENCFF709PAL.bigWig bigWig (minus strand signal of all reads) 78.2 MB
ENCFF711QSZ.bigWig bigWig (plus strand signal of all reads) 93.9 MB
ENCFF714WEK.bigWig bigWig (minus strand signal of all reads) 81.4 MB
ENCFF715ZMC.bigWig bigWig (minus strand signal of all reads) 73.3 MB
ENCFF724XQM.bigWig bigWig (plus strand signal of all reads) 92.7 MB
ENCFF739EFL.bigWig bigWig (plus strand signal of unique reads) 68.3 MB
ENCFF750YIX.bigWig bigWig (minus strand signal of unique reads) 81.3 MB
ENCFF760YIA.bam bam (transcriptome alignments) 5.1 GB
ENCFF793LEQ.bam bam (alignments) 3.5 GB
ENCFF816MSU.bigWig bigWig (minus strand signal of all reads) 67.9 MB
ENCFF824LLT.bam bam (alignments) 4.3 GB
ENCFF827VIH.bigWig bigWig (plus strand signal of all reads) 93.9 MB
ENCFF859JKL.tsv tsv (transcript quantifications) 29.8 MB
ENCFF867COE.bigWig bigWig (minus strand signal of unique reads) 70.8 MB
ENCFF884KVG.tsv tsv (transcript quantifications) 24.9 MB
ENCFF906RHK.bam bam (alignments) 3.5 GB
ENCFF907OGY.bam bam (alignments) 4.2 GB
ENCFF920WSI.bigWig bigWig (minus strand signal of unique reads) 70.8 MB
ENCFF923ISV.bigWig bigWig (minus strand signal of unique reads) 66.8 MB
ENCFF928NQP.tsv tsv (transcript quantifications) 29.8 MB
ENCFF929OZI.bigWig bigWig (plus strand signal of unique reads) 83.6 MB
ENCFF939XGF.bam bam (alignments) 2.9 GB
ENCFF956KIB.bigWig bigWig (minus strand signal of unique reads) 81.7 MB
ENCFF960EOH.tsv tsv (gene quantifications) 10.4 MB
ENCFF964VWS.bigWig bigWig (plus strand signal of all reads) 82.5 MB
ENCFF972JIB.bigWig bigWig (plus strand signal of unique reads) 64.7 MB
ENCFF997WGH.bam bam (alignments) 4.3 GB
ENCSR780YFF ENCSR · via encode_api

shRNA knockdown against FXR1 in K562 cells followed by RNA-seq. (FXR1-LV08)

Homo sapiens

92 data files
FileTypeSize
ENCFF006WJX.bigWig bigWig (plus strand signal of all reads) 86.8 MB
ENCFF008AZM.bigWig bigWig (plus strand signal of all reads) 88.7 MB
ENCFF015HHX.bigWig bigWig (minus strand signal of unique reads) 78.8 MB
ENCFF024TVU.bigWig bigWig (minus strand signal of unique reads) 78.8 MB
ENCFF029QAJ.bigWig bigWig (minus strand signal of unique reads) 71.5 MB
ENCFF045NNF.bam bam (alignments) 3.9 GB
ENCFF051HLH.tsv tsv (differential expression quantifications) 5.3 MB
ENCFF069YJJ.tsv tsv (transcript quantifications) 25.3 MB
ENCFF111ZUU.tsv tsv (transcript quantifications) 24.9 MB
ENCFF116BQD.bigWig bigWig (minus strand signal of all reads) 86.9 MB
ENCFF125YQI.bigWig bigWig (minus strand signal of unique reads) 78.6 MB
ENCFF146YZQ.bam bam (alignments) 3.7 GB
ENCFF149PGZ.bam bam (alignments) 4.5 GB
ENCFF154JMB.bigWig bigWig (plus strand signal of unique reads) 71.4 MB
ENCFF156GQN.bigWig bigWig (minus strand signal of unique reads) 72.7 MB
ENCFF157QUB.bigWig bigWig (minus strand signal of all reads) 86.9 MB
ENCFF158UWA.bigWig bigWig (plus strand signal of all reads) 90.7 MB
ENCFF169QHR.tsv tsv (gene quantifications) 9.5 MB
ENCFF178PGE.bam bam (alignments) 4.6 GB
ENCFF180NEP.tsv tsv (transcript quantifications) 29.8 MB
ENCFF195HUT.bigWig bigWig (minus strand signal of all reads) 74.8 MB
ENCFF208GLL.fastq fastq (reads) 2.4 GB
ENCFF213ZOD.bam bam (alignments) 4.8 GB
ENCFF233GWJ.bigWig bigWig (plus strand signal of all reads) 81.3 MB
ENCFF234PUZ.bam bam (transcriptome alignments) 5.8 GB
ENCFF236BSD.bigWig bigWig (plus strand signal of unique reads) 73.3 MB
ENCFF255NVX.bigWig bigWig (minus strand signal of all reads) 80.1 MB
ENCFF259OVU.bigWig bigWig (minus strand signal of all reads) 77.5 MB
ENCFF275AZD.bigWig bigWig (plus strand signal of unique reads) 74.5 MB
ENCFF297LWW.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF299VMK.bigWig bigWig (plus strand signal of unique reads) 68.2 MB
ENCFF304IGT.bigWig bigWig (plus strand signal of all reads) 88.0 MB
ENCFF308CEF.tsv tsv (transcript quantifications) 24.9 MB
ENCFF313HVS.bigWig bigWig (minus strand signal of all reads) 78.2 MB
ENCFF332WAY.fastq fastq (reads) 2.4 GB
ENCFF339PYB.bam bam (transcriptome alignments) 5.3 GB
ENCFF346VHL.tsv tsv (transcript quantifications) 25.3 MB
ENCFF401FMX.bam bam (transcriptome alignments) 5.1 GB
ENCFF402GJS.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF422CKR.bigWig bigWig (plus strand signal of all reads) 79.1 MB
ENCFF430FYR.fastq fastq (reads) 2.5 GB
ENCFF431DMD.bigWig bigWig (plus strand signal of all reads) 78.8 MB
ENCFF437UPW.bam bam (alignments) 3.7 GB
ENCFF440EAA.bigWig bigWig (plus strand signal of all reads) 77.0 MB
ENCFF446MKK.bigWig bigWig (plus strand signal of unique reads) 72.1 MB
ENCFF448EHC.bigWig bigWig (minus strand signal of unique reads) 66.4 MB
ENCFF496YGR.bigWig bigWig (plus strand signal of unique reads) 80.5 MB
ENCFF500JJS.bam bam (alignments) 3.9 GB
ENCFF502KYN.bam bam (transcriptome alignments) 5.1 GB
ENCFF505FGQ.tsv tsv (transcript quantifications) 27.3 MB
ENCFF512SZV.bam bam (alignments) 4.0 GB
ENCFF518RPQ.bam bam (alignments) 4.6 GB
ENCFF536PVG.bigWig bigWig (plus strand signal of unique reads) 77.6 MB
ENCFF554GUL.tar tar (differential splicing quantifications) 4.5 MB
ENCFF584MBV.bam bam (transcriptome alignments) 5.3 GB
ENCFF612GNI.bigWig bigWig (plus strand signal of unique reads) 78.5 MB
ENCFF613TIE.bigWig bigWig (minus strand signal of unique reads) 69.6 MB
ENCFF620EOC.bigWig bigWig (minus strand signal of unique reads) 70.5 MB
ENCFF630AWC.bigWig bigWig (minus strand signal of all reads) 85.7 MB
ENCFF638LEJ.tsv tsv (transcript quantifications) 29.8 MB
ENCFF638ZDR.bigWig bigWig (minus strand signal of unique reads) 73.0 MB
ENCFF644DVD.tsv tsv (gene quantifications) 9.1 MB
ENCFF648PCR.bigWig bigWig (plus strand signal of all reads) 88.0 MB
ENCFF651VQF.tsv tsv (gene quantifications) 10.4 MB
ENCFF653MUZ.bigWig bigWig (plus strand signal of unique reads) 80.6 MB
ENCFF671FOM.bigWig bigWig (minus strand signal of unique reads) 76.7 MB
ENCFF687HMW.bam bam (transcriptome alignments) 6.0 GB
ENCFF688AWG.tsv tsv (transcript quantifications) 27.3 MB
ENCFF693MUU.bigWig bigWig (plus strand signal of unique reads) 74.5 MB
ENCFF714WXH.bam bam (alignments) 4.8 GB
ENCFF715HXC.tsv tsv (differential expression quantifications) 3.0 MB
ENCFF733UKJ.fastq fastq (reads) 2.4 GB
ENCFF759MYJ.tsv tsv (gene quantifications) 9.1 MB
ENCFF776SUG.bigWig bigWig (minus strand signal of all reads) 89.8 MB
ENCFF793VTR.tsv tsv (gene quantifications) 10.4 MB
ENCFF797QEU.bigWig bigWig (minus strand signal of unique reads) 76.6 MB
ENCFF806ULF.bigWig bigWig (minus strand signal of unique reads) 75.7 MB
ENCFF818KPZ.tsv tsv (differential expression quantifications) 4.3 MB
ENCFF830AJV.bigWig bigWig (plus strand signal of unique reads) 78.5 MB
ENCFF838XLZ.bigWig bigWig (minus strand signal of all reads) 89.8 MB
ENCFF850ECB.bigWig bigWig (plus strand signal of unique reads) 80.5 MB
ENCFF868IGZ.bigWig bigWig (minus strand signal of all reads) 87.8 MB
ENCFF873CZR.bigWig bigWig (plus strand signal of all reads) 75.8 MB
ENCFF914DJS.bigWig bigWig (minus strand signal of all reads) 76.8 MB
ENCFF923OMI.bam bam (alignments) 4.4 GB
ENCFF923QEX.bigWig bigWig (minus strand signal of all reads) 76.0 MB
ENCFF948AYN.bigWig bigWig (plus strand signal of all reads) 77.8 MB
ENCFF963EAX.tar tar (differential splicing quantifications) 16.0 MB
ENCFF972IUP.bigWig bigWig (plus strand signal of all reads) 90.7 MB
ENCFF974WZY.tar tar (differential splicing quantifications) 3.7 MB
ENCFF994SLW.tsv tsv (gene quantifications) 9.5 MB
ENCFF999GCB.bam bam (alignments) 3.9 GB
ENCSR648QFY ENCSR · via encode_api

shRNA knockdown against PCBP2 in K562 cells followed by RNA-seq. (PCBP2-LV11)

Homo sapiens

92 data files
FileTypeSize
ENCFF011EUY.bigWig bigWig (minus strand signal of all reads) 100.9 MB
ENCFF048MRY.bigWig bigWig (minus strand signal of unique reads) 120.8 MB
ENCFF059LHA.bigWig bigWig (minus strand signal of unique reads) 121.7 MB
ENCFF061ADN.bam bam (alignments) 4.5 GB
ENCFF091PVM.bigWig bigWig (plus strand signal of all reads) 140.8 MB
ENCFF109AAH.bigWig bigWig (minus strand signal of all reads) 138.5 MB
ENCFF113GXL.bam bam (transcriptome alignments) 4.1 GB
ENCFF128TMH.bam bam (transcriptome alignments) 4.0 GB
ENCFF133KUF.bigWig bigWig (plus strand signal of all reads) 140.8 MB
ENCFF139HWV.tsv tsv (differential expression quantifications) 4.3 MB
ENCFF145ERN.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF151LCA.bigWig bigWig (minus strand signal of unique reads) 99.5 MB
ENCFF156PRB.bigWig bigWig (minus strand signal of unique reads) 108.9 MB
ENCFF166JNU.bam bam (transcriptome alignments) 4.0 GB
ENCFF185KMI.tsv tsv (transcript quantifications) 29.8 MB
ENCFF187XXW.tsv tsv (transcript quantifications) 27.5 MB
ENCFF202FTF.bigWig bigWig (minus strand signal of all reads) 120.7 MB
ENCFF206DUW.bigWig bigWig (plus strand signal of all reads) 126.8 MB
ENCFF214CRU.tar tar (differential splicing quantifications) 15.1 MB
ENCFF223LTB.fastq fastq (reads) 1.9 GB
ENCFF229QEW.bam bam (alignments) 3.3 GB
ENCFF233DOV.bigWig bigWig (minus strand signal of unique reads) 109.1 MB
ENCFF240BGI.bigWig bigWig (minus strand signal of all reads) 136.3 MB
ENCFF262MEU.bigWig bigWig (plus strand signal of all reads) 123.5 MB
ENCFF269KRE.bam bam (alignments) 2.9 GB
ENCFF279MDC.fastq fastq (reads) 2.2 GB
ENCFF295DHT.bam bam (alignments) 4.3 GB
ENCFF296FCZ.bigWig bigWig (plus strand signal of unique reads) 95.5 MB
ENCFF299IFI.tsv tsv (gene quantifications) 10.4 MB
ENCFF353HKX.bigWig bigWig (minus strand signal of all reads) 124.8 MB
ENCFF361TNN.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF361VCG.bigWig bigWig (plus strand signal of unique reads) 112.8 MB
ENCFF370VZR.bigWig bigWig (minus strand signal of unique reads) 98.1 MB
ENCFF390SQT.bigWig bigWig (plus strand signal of all reads) 120.7 MB
ENCFF393NGI.tsv tsv (gene quantifications) 9.1 MB
ENCFF424KOR.bigWig bigWig (plus strand signal of all reads) 112.8 MB
ENCFF433QJL.bam bam (alignments) 3.7 GB
ENCFF438UXM.tsv tsv (transcript quantifications) 24.8 MB
ENCFF440ZFR.bigWig bigWig (plus strand signal of unique reads) 114.6 MB
ENCFF446QEY.bigWig bigWig (plus strand signal of unique reads) 101.1 MB
ENCFF455RDR.bigWig bigWig (minus strand signal of unique reads) 109.3 MB
ENCFF464TAQ.tsv tsv (differential expression quantifications) 5.4 MB
ENCFF494COM.bigWig bigWig (plus strand signal of unique reads) 112.7 MB
ENCFF510MFB.bigWig bigWig (minus strand signal of all reads) 110.4 MB
ENCFF512TMB.bam bam (alignments) 4.5 GB
ENCFF520RZU.tsv tsv (transcript quantifications) 29.8 MB
ENCFF525OFM.bam bam (alignments) 3.9 GB
ENCFF543WUA.bigWig bigWig (minus strand signal of all reads) 118.6 MB
ENCFF558VJY.tsv tsv (gene quantifications) 9.4 MB
ENCFF566DJY.bam bam (alignments) 2.9 GB
ENCFF567AKU.tar tar (differential splicing quantifications) 3.8 MB
ENCFF569FFO.bigWig bigWig (plus strand signal of unique reads) 125.7 MB
ENCFF571XTU.tsv tsv (transcript quantifications) 25.3 MB
ENCFF577SGV.bigWig bigWig (plus strand signal of unique reads) 126.0 MB
ENCFF580RBD.fastq fastq (reads) 2.0 GB
ENCFF597WPS.bam bam (alignments) 3.3 GB
ENCFF610ZFY.bigWig bigWig (minus strand signal of all reads) 123.9 MB
ENCFF623MMK.bigWig bigWig (plus strand signal of unique reads) 102.8 MB
ENCFF624VHD.bigWig bigWig (minus strand signal of unique reads) 108.9 MB
ENCFF639PYN.bigWig bigWig (plus strand signal of all reads) 109.4 MB
ENCFF647LDK.bigWig bigWig (minus strand signal of all reads) 107.0 MB
ENCFF684RIN.tsv tsv (transcript quantifications) 27.4 MB
ENCFF700DQU.tsv tsv (differential expression quantifications) 2.6 MB
ENCFF726RYD.tsv tsv (gene quantifications) 10.4 MB
ENCFF729CGJ.bigWig bigWig (plus strand signal of all reads) 138.7 MB
ENCFF742FRP.fastq fastq (reads) 2.3 GB
ENCFF749OUV.bigWig bigWig (plus strand signal of unique reads) 105.4 MB
ENCFF752OWX.bam bam (alignments) 3.9 GB
ENCFF754PPQ.bigWig bigWig (minus strand signal of unique reads) 102.0 MB
ENCFF757TPY.bigWig bigWig (plus strand signal of unique reads) 124.6 MB
ENCFF764MNT.bigWig bigWig (plus strand signal of all reads) 126.0 MB
ENCFF769YVS.bam bam (transcriptome alignments) 3.4 GB
ENCFF793ZBE.tsv tsv (transcript quantifications) 24.8 MB
ENCFF813YGH.tar tar (differential splicing quantifications) 4.5 MB
ENCFF816IJN.bigWig bigWig (plus strand signal of unique reads) 112.5 MB
ENCFF825TFD.bigWig bigWig (minus strand signal of all reads) 108.5 MB
ENCFF829CTY.bigWig bigWig (minus strand signal of all reads) 138.5 MB
ENCFF829FUM.bam bam (alignments) 3.4 GB
ENCFF837BNV.bam bam (transcriptome alignments) 4.7 GB
ENCFF840BWV.bigWig bigWig (plus strand signal of all reads) 126.8 MB
ENCFF855REP.tsv tsv (gene quantifications) 9.4 MB
ENCFF855STC.bigWig bigWig (minus strand signal of unique reads) 92.3 MB
ENCFF877ZTY.tsv tsv (transcript quantifications) 25.3 MB
ENCFF885AOZ.bigWig bigWig (plus strand signal of all reads) 103.2 MB
ENCFF885PTT.bigWig bigWig (minus strand signal of unique reads) 122.1 MB
ENCFF914BVD.bigWig bigWig (minus strand signal of all reads) 124.7 MB
ENCFF932EBF.bigWig bigWig (minus strand signal of unique reads) 109.2 MB
ENCFF934RMT.bam bam (transcriptome alignments) 3.5 GB
ENCFF946BKG.bigWig bigWig (plus strand signal of all reads) 110.5 MB
ENCFF955HDY.tsv tsv (gene quantifications) 9.1 MB
ENCFF974BVT.bam bam (alignments) 2.9 GB
ENCFF989XDF.bigWig bigWig (plus strand signal of unique reads) 112.3 MB
ENCSR792XFP ENCSR · via encode_api

shRNA knockdown against MATR3 in K562 cells followed by RNA-seq. (MATR3-06-LV11)

Homo sapiens

92 data files
FileTypeSize
ENCFF009IZI.bigWig bigWig (plus strand signal of all reads) 95.3 MB
ENCFF030YZI.bigWig bigWig (plus strand signal of all reads) 102.1 MB
ENCFF032DWS.bigWig bigWig (minus strand signal of unique reads) 77.1 MB
ENCFF034PYI.bigWig bigWig (minus strand signal of unique reads) 90.4 MB
ENCFF034SAF.bigWig bigWig (plus strand signal of unique reads) 91.7 MB
ENCFF049XAT.bigWig bigWig (plus strand signal of all reads) 117.3 MB
ENCFF097TRL.bigWig bigWig (plus strand signal of unique reads) 79.4 MB
ENCFF098HXJ.bigWig bigWig (minus strand signal of unique reads) 89.3 MB
ENCFF119KOI.bigWig bigWig (plus strand signal of all reads) 100.8 MB
ENCFF124HEU.bigWig bigWig (plus strand signal of all reads) 90.4 MB
ENCFF135SJB.bigWig bigWig (minus strand signal of all reads) 100.1 MB
ENCFF140UQA.tsv tsv (gene quantifications) 10.4 MB
ENCFF142OQZ.bigWig bigWig (plus strand signal of all reads) 105.5 MB
ENCFF152PWD.fastq fastq (reads) 2.1 GB
ENCFF172ZAU.tsv tsv (transcript quantifications) 25.3 MB
ENCFF174HBZ.tsv tsv (transcript quantifications) 29.8 MB
ENCFF175TVD.tsv tsv (transcript quantifications) 24.9 MB
ENCFF250FEM.tar tar (differential splicing quantifications) 4.0 MB
ENCFF273LIM.bigWig bigWig (plus strand signal of unique reads) 103.6 MB
ENCFF273VDD.tsv tsv (differential expression quantifications) 4.3 MB
ENCFF281ZBQ.tsv tsv (transcript quantifications) 29.8 MB
ENCFF290OYA.bigWig bigWig (minus strand signal of all reads) 99.3 MB
ENCFF302CDE.bam bam (transcriptome alignments) 5.8 GB
ENCFF316NXJ.bigWig bigWig (plus strand signal of unique reads) 87.3 MB
ENCFF318LPY.bam bam (transcriptome alignments) 5.2 GB
ENCFF326HCV.tsv tsv (gene quantifications) 10.4 MB
ENCFF330FMI.bigWig bigWig (minus strand signal of unique reads) 84.8 MB
ENCFF334DAS.bigWig bigWig (minus strand signal of all reads) 113.9 MB
ENCFF342XGF.bigWig bigWig (plus strand signal of unique reads) 94.9 MB
ENCFF346ITI.bam bam (transcriptome alignments) 5.0 GB
ENCFF371QXN.bigWig bigWig (minus strand signal of all reads) 102.6 MB
ENCFF376QBR.bigWig bigWig (plus strand signal of all reads) 85.3 MB
ENCFF379UUY.bam bam (alignments) 4.0 GB
ENCFF412LET.tar tar (differential splicing quantifications) 15.9 MB
ENCFF429MZA.tsv tsv (differential expression quantifications) 2.0 MB
ENCFF434HSN.bam bam (alignments) 3.4 GB
ENCFF449IDY.tsv tsv (transcript quantifications) 27.4 MB
ENCFF459HWH.tsv tsv (transcript quantifications) 27.4 MB
ENCFF472JQQ.bam bam (alignments) 5.1 GB
ENCFF480LFH.bam bam (transcriptome alignments) 4.4 GB
ENCFF502MED.bigWig bigWig (minus strand signal of unique reads) 100.7 MB
ENCFF518LQX.bam bam (transcriptome alignments) 4.9 GB
ENCFF528TJW.tsv tsv (gene quantifications) 9.1 MB
ENCFF547XWI.bam bam (alignments) 3.8 GB
ENCFF551HXE.tsv tsv (transcript quantifications) 25.3 MB
ENCFF565DLS.bam bam (alignments) 3.7 GB
ENCFF583AZA.bigWig bigWig (minus strand signal of unique reads) 100.8 MB
ENCFF590TEH.bigWig bigWig (plus strand signal of unique reads) 103.6 MB
ENCFF591YZH.bigWig bigWig (minus strand signal of all reads) 93.7 MB
ENCFF621SSU.bigWig bigWig (plus strand signal of unique reads) 92.4 MB
ENCFF628EYB.bigWig bigWig (minus strand signal of all reads) 115.6 MB
ENCFF638AZR.bigWig bigWig (plus strand signal of unique reads) 103.5 MB
ENCFF644PVA.bigWig bigWig (minus strand signal of unique reads) 82.2 MB
ENCFF658XPK.bigWig bigWig (plus strand signal of unique reads) 91.9 MB
ENCFF663VXW.bam bam (alignments) 4.0 GB
ENCFF680JDY.bigWig bigWig (minus strand signal of unique reads) 100.6 MB
ENCFF680PND.fastq fastq (reads) 2.4 GB
ENCFF685FKL.bam bam (alignments) 3.0 GB
ENCFF687FUZ.bam bam (transcriptome alignments) 4.4 GB
ENCFF691NME.bigWig bigWig (minus strand signal of all reads) 104.1 MB
ENCFF710GUN.bigWig bigWig (minus strand signal of unique reads) 92.2 MB
ENCFF731ACZ.bigWig bigWig (minus strand signal of all reads) 89.8 MB
ENCFF734AEA.tsv tsv (gene quantifications) 9.5 MB
ENCFF744BON.bigWig bigWig (plus strand signal of all reads) 91.6 MB
ENCFF747UXW.bigWig bigWig (minus strand signal of all reads) 115.6 MB
ENCFF750ERI.bigWig bigWig (plus strand signal of all reads) 105.5 MB
ENCFF756BVW.bigWig bigWig (minus strand signal of unique reads) 82.7 MB
ENCFF758CSC.tsv tsv (gene quantifications) 9.1 MB
ENCFF760EAW.bigWig bigWig (plus strand signal of all reads) 104.0 MB
ENCFF781ILZ.bigWig bigWig (plus strand signal of all reads) 117.3 MB
ENCFF781VMT.bigWig bigWig (plus strand signal of unique reads) 84.3 MB
ENCFF782YRE.bam bam (alignments) 2.9 GB
ENCFF784CBY.bigWig bigWig (minus strand signal of all reads) 83.6 MB
ENCFF795VCY.bigWig bigWig (minus strand signal of unique reads) 90.0 MB
ENCFF799QLN.bigWig bigWig (plus strand signal of unique reads) 85.1 MB
ENCFF807NRV.bigWig bigWig (minus strand signal of all reads) 104.1 MB
ENCFF816VZI.bam bam (alignments) 3.4 GB
ENCFF823ATI.bigWig bigWig (minus strand signal of all reads) 89.1 MB
ENCFF825EYF.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF825RFE.tsv tsv (gene quantifications) 9.5 MB
ENCFF846JAB.bigWig bigWig (plus strand signal of unique reads) 92.8 MB
ENCFF877LUZ.bigWig bigWig (minus strand signal of unique reads) 89.4 MB
ENCFF883YAT.fastq fastq (reads) 2.3 GB
ENCFF884GVJ.tsv tsv (differential expression quantifications) 5.4 MB
ENCFF887GXB.bam bam (alignments) 2.9 GB
ENCFF889JXP.fastq fastq (reads) 2.0 GB
ENCFF909CAL.bam bam (alignments) 5.1 GB
ENCFF909RTV.tar tar (differential splicing quantifications) 3.5 MB
ENCFF939FRX.tsv tsv (differential expression quantifications) 2.6 MB
ENCFF947WJB.bam bam (alignments) 4.4 GB
ENCFF968RHK.tsv tsv (transcript quantifications) 24.9 MB
ENCFF980BQD.bigWig bigWig (plus strand signal of all reads) 115.5 MB
ENCSR047EEG ENCSR · via encode_api

shRNA knockdown against PABPC4 in K562 cells followed by RNA-seq. (PABPC4-LV08)

Homo sapiens

92 data files
FileTypeSize
ENCFF030MRS.bam bam (alignments) 4.4 GB
ENCFF035ZWG.bigWig bigWig (minus strand signal of all reads) 96.2 MB
ENCFF039ISR.bigWig bigWig (minus strand signal of unique reads) 73.4 MB
ENCFF040UUJ.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF053YDI.bigWig bigWig (minus strand signal of unique reads) 79.4 MB
ENCFF054PUG.bam bam (transcriptome alignments) 4.6 GB
ENCFF060CSB.bigWig bigWig (plus strand signal of unique reads) 82.8 MB
ENCFF067AWJ.bam bam (alignments) 3.6 GB
ENCFF084LTZ.tsv tsv (transcript quantifications) 29.8 MB
ENCFF087JBT.bigWig bigWig (plus strand signal of unique reads) 87.2 MB
ENCFF124NAL.tsv tsv (differential expression quantifications) 4.1 MB
ENCFF141BRL.bigWig bigWig (plus strand signal of unique reads) 87.7 MB
ENCFF144LFK.tsv tsv (gene quantifications) 9.1 MB
ENCFF157XNR.tsv tsv (gene quantifications) 9.4 MB
ENCFF173UZI.bigWig bigWig (minus strand signal of unique reads) 80.1 MB
ENCFF187QCP.bigWig bigWig (plus strand signal of all reads) 88.1 MB
ENCFF197DLF.bigWig bigWig (plus strand signal of unique reads) 87.8 MB
ENCFF199ZBI.bam bam (alignments) 3.6 GB
ENCFF201QCR.bigWig bigWig (minus strand signal of unique reads) 85.1 MB
ENCFF206ASM.bam bam (alignments) 4.3 GB
ENCFF207ALR.bigWig bigWig (plus strand signal of unique reads) 87.6 MB
ENCFF216UTI.bigWig bigWig (minus strand signal of all reads) 85.6 MB
ENCFF216WSG.bigWig bigWig (plus strand signal of all reads) 89.3 MB
ENCFF231GBU.bigWig bigWig (minus strand signal of all reads) 87.3 MB
ENCFF250LQT.tsv tsv (differential expression quantifications) 2.8 MB
ENCFF262KLE.fastq fastq (reads) 2.3 GB
ENCFF270TKQ.tar tar (differential splicing quantifications) 14.0 MB
ENCFF286BYA.bam bam (transcriptome alignments) 5.2 GB
ENCFF302NVV.bam bam (alignments) 4.4 GB
ENCFF308IDS.tsv tsv (gene quantifications) 9.1 MB
ENCFF312JIR.bam bam (alignments) 3.6 GB
ENCFF314MCQ.bigWig bigWig (minus strand signal of all reads) 94.9 MB
ENCFF342CAO.bigWig bigWig (plus strand signal of all reads) 87.3 MB
ENCFF349HGG.bigWig bigWig (plus strand signal of all reads) 97.7 MB
ENCFF351VRI.bigWig bigWig (minus strand signal of all reads) 94.8 MB
ENCFF356VBD.bigWig bigWig (minus strand signal of unique reads) 85.2 MB
ENCFF366MZB.bigWig bigWig (minus strand signal of all reads) 95.7 MB
ENCFF366XBY.bam bam (alignments) 3.6 GB
ENCFF393GUC.bigWig bigWig (minus strand signal of all reads) 80.5 MB
ENCFF395KPZ.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF397OFD.bigWig bigWig (minus strand signal of unique reads) 85.2 MB
ENCFF407GTH.bam bam (transcriptome alignments) 4.6 GB
ENCFF407MLI.bigWig bigWig (plus strand signal of all reads) 96.5 MB
ENCFF433VYK.bigWig bigWig (plus strand signal of unique reads) 87.7 MB
ENCFF457DTV.fastq fastq (reads) 2.3 GB
ENCFF467DHT.tsv tsv (differential expression quantifications) 5.4 MB
ENCFF474DIX.tsv tsv (transcript quantifications) 29.8 MB
ENCFF497HAC.bigWig bigWig (plus strand signal of all reads) 82.3 MB
ENCFF502MLD.bigWig bigWig (plus strand signal of unique reads) 76.4 MB
ENCFF504SSC.bigWig bigWig (plus strand signal of all reads) 97.7 MB
ENCFF506JOE.bigWig bigWig (minus strand signal of all reads) 80.8 MB
ENCFF507JTV.tsv tsv (transcript quantifications) 27.3 MB
ENCFF508BGG.tsv tsv (transcript quantifications) 24.9 MB
ENCFF518NMD.bam bam (transcriptome alignments) 5.2 GB
ENCFF524MXJ.fastq fastq (reads) 2.3 GB
ENCFF541ZZS.bigWig bigWig (minus strand signal of all reads) 94.9 MB
ENCFF542FFA.bigWig bigWig (plus strand signal of unique reads) 81.7 MB
ENCFF556VSL.tsv tsv (gene quantifications) 9.4 MB
ENCFF575URE.bam bam (alignments) 4.4 GB
ENCFF581YIL.bigWig bigWig (plus strand signal of all reads) 82.7 MB
ENCFF625HPD.tsv tsv (gene quantifications) 10.4 MB
ENCFF632VPP.tar tar (differential splicing quantifications) 3.1 MB
ENCFF653MRD.tsv tsv (transcript quantifications) 25.3 MB
ENCFF671TAX.tsv tsv (gene quantifications) 10.4 MB
ENCFF675FSH.bigWig bigWig (minus strand signal of all reads) 86.1 MB
ENCFF692KUG.bigWig bigWig (plus strand signal of unique reads) 82.3 MB
ENCFF696WFU.bigWig bigWig (plus strand signal of unique reads) 87.7 MB
ENCFF703ZLQ.bigWig bigWig (plus strand signal of all reads) 96.5 MB
ENCFF708OQJ.fastq fastq (reads) 2.3 GB
ENCFF710FGW.bam bam (alignments) 3.6 GB
ENCFF722ESS.bigWig bigWig (minus strand signal of unique reads) 79.9 MB
ENCFF730OWG.bigWig bigWig (minus strand signal of unique reads) 73.9 MB
ENCFF752GRC.bigWig bigWig (minus strand signal of unique reads) 80.4 MB
ENCFF764NOO.tsv tsv (transcript quantifications) 24.9 MB
ENCFF766ZMI.bigWig bigWig (plus strand signal of all reads) 97.3 MB
ENCFF781MOR.bigWig bigWig (plus strand signal of all reads) 87.2 MB
ENCFF783WLB.bam bam (transcriptome alignments) 4.6 GB
ENCFF813HDB.tar tar (differential splicing quantifications) 3.6 MB
ENCFF828FQM.bigWig bigWig (minus strand signal of unique reads) 84.8 MB
ENCFF834MUF.bigWig bigWig (minus strand signal of unique reads) 85.2 MB
ENCFF842IYL.bigWig bigWig (plus strand signal of unique reads) 82.3 MB
ENCFF871CKF.bam bam (transcriptome alignments) 4.6 GB
ENCFF902RZF.bam bam (alignments) 4.4 GB
ENCFF903UNQ.bigWig bigWig (plus strand signal of all reads) 96.5 MB
ENCFF908IKC.tsv tsv (transcript quantifications) 25.3 MB
ENCFF909HWA.bam bam (alignments) 3.6 GB
ENCFF915AML.bigWig bigWig (minus strand signal of unique reads) 85.3 MB
ENCFF919GSG.bigWig bigWig (minus strand signal of all reads) 96.2 MB
ENCFF926NTH.bigWig bigWig (plus strand signal of unique reads) 75.8 MB
ENCFF941HOC.tsv tsv (transcript quantifications) 27.3 MB
ENCFF966TWZ.bigWig bigWig (minus strand signal of all reads) 85.8 MB
ENCFF979EOV.bam bam (alignments) 4.3 GB
ENCSR889MBF ENCSR · via encode_api

RNA-seq on K562 cells treated with a CRISPR gRNA against TRNAU1AP. (TRNAU1AP-BGKcLV06)

Homo sapiens

92 data files
FileTypeSize
ENCFF040COG.bam bam (alignments); assembly: hg19; genome annotation: V19 3.1 GB
ENCFF047HAE.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 4.0 MB
ENCFF050RGH.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 55.2 MB
ENCFF055OYM.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 89.0 MB
ENCFF062ILL.bam bam (alignments); assembly: hg19; genome annotation: V19 3.9 GB
ENCFF078GVE.fastq fastq (reads) 2.3 GB
ENCFF081IYR.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 5.7 MB
ENCFF087ECV.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 53.1 MB
ENCFF158DVF.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF158RWE.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF177WFX.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 60.5 MB
ENCFF198QWE.bam bam (alignments); assembly: hg19; genome annotation: V19 1.8 GB
ENCFF217MWP.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 3.4 MB
ENCFF218OXY.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 5.2 GB
ENCFF225LTY.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF248NPT.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 53.0 MB
ENCFF256TDZ.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 2.8 GB
ENCFF270LXT.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF285NUY.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 56.2 MB
ENCFF305XRF.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 79.3 MB
ENCFF318XYZ.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 60.9 MB
ENCFF321KXQ.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 80.6 MB
ENCFF327UQU.bam bam (alignments); assembly: hg19; genome annotation: V19 1.8 GB
ENCFF347WUB.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.2 GB
ENCFF360WKG.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.0 GB
ENCFF371PJT.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 61.7 MB
ENCFF372GBT.bam bam (alignments); assembly: GRCh38; genome annotation: V29 4.0 GB
ENCFF386YQB.bam bam (alignments); assembly: hg19; genome annotation: V19 2.2 GB
ENCFF389NQP.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 81.4 MB
ENCFF391SCG.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.7 MB
ENCFF391YQF.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 82.6 MB
ENCFF398IUK.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 61.7 MB
ENCFF424RVL.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.5 MB
ENCFF435KYQ.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 74.6 MB
ENCFF437QDP.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 77.8 MB
ENCFF441BSJ.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 49.4 MB
ENCFF443DHN.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 13.9 MB
ENCFF469WDN.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 2.9 GB
ENCFF473SIF.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF496CJK.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 79.3 MB
ENCFF503RMS.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 76.3 MB
ENCFF532DAW.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF537ZZM.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 81.0 MB
ENCFF558YXV.bam bam (alignments); assembly: GRCh38; genome annotation: V24 2.2 GB
ENCFF581KKX.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 84.2 MB
ENCFF583IBT.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 54.0 MB
ENCFF588FXI.bam bam (alignments); assembly: hg19; genome annotation: V19 3.1 GB
ENCFF588UME.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 90.2 MB
ENCFF592JVU.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 81.4 MB
ENCFF611QWE.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 79.5 MB
ENCFF612KLU.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 5.2 GB
ENCFF624QMV.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.7 MB
ENCFF639GRQ.bam bam (alignments); assembly: GRCh38; genome annotation: V24 1.8 GB
ENCFF640IZR.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 72.0 MB
ENCFF641SNE.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 91.8 MB
ENCFF642YSB.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF659YPX.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 51.1 MB
ENCFF679URS.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 90.6 MB
ENCFF702TNF.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF703QCJ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 77.1 MB
ENCFF705MJI.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 54.4 MB
ENCFF713CUK.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 52.0 MB
ENCFF725RGA.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 53.3 MB
ENCFF731YTL.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 51.1 MB
ENCFF733ANM.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 54.4 MB
ENCFF735MYQ.fastq fastq (reads) 2.3 GB
ENCFF741ULX.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 91.8 MB
ENCFF764ALV.bam bam (alignments); assembly: GRCh38; genome annotation: V29 2.2 GB
ENCFF795KMO.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 3.3 GB
ENCFF808QVU.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 50.5 MB
ENCFF813BNC.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 52.8 MB
ENCFF813BNZ.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 46.6 MB
ENCFF814XQK.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 81.7 MB
ENCFF825EXV.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF830SNZ.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 4.2 MB
ENCFF855IPQ.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 60.9 MB
ENCFF868QVR.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 75.0 MB
ENCFF873GPN.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 47.9 MB
ENCFF878PVZ.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF888JXZ.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 59.7 MB
ENCFF901MEK.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 79.1 MB
ENCFF906VEK.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 49.8 MB
ENCFF931OQE.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.2 MB
ENCFF932BIG.fastq fastq (reads) 1.3 GB
ENCFF944XAS.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.4 MB
ENCFF947RFA.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 6.0 GB
ENCFF958WDB.fastq fastq (reads) 1.3 GB
ENCFF962ZLK.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF964SKW.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.9 MB
ENCFF974TCY.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 90.5 MB
ENCFF985FIZ.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 69.9 MB
ENCFF996OLN.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 54.0 MB
ENCSR284SZO ENCSR · via encode_api

RNA-seq on HepG2 cells treated with a CRISPR gRNA against EXOSC5. (EXOSC5-BGHcLV07)

Homo sapiens

92 data files
FileTypeSize
ENCFF007PXN.fastq fastq (reads) 2.1 GB
ENCFF008MLQ.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 76.1 MB
ENCFF011MSW.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.0 GB
ENCFF016GKZ.bam bam (alignments); assembly: hg19; genome annotation: V19 2.8 GB
ENCFF020GBZ.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 77.3 MB
ENCFF021CFS.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 68.3 MB
ENCFF035RVA.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 68.3 MB
ENCFF050JPG.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 12.2 MB
ENCFF051MJK.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 59.3 MB
ENCFF055HTJ.bam bam (alignments); assembly: GRCh38; genome annotation: V29 2.9 GB
ENCFF083KTZ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 52.8 MB
ENCFF111PSM.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.7 MB
ENCFF128OSP.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 4.7 GB
ENCFF140ZTO.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 65.1 MB
ENCFF146XIP.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 60.9 MB
ENCFF175NXT.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.9 MB
ENCFF188VWQ.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF203KVV.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 60.8 MB
ENCFF208KZD.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 76.1 MB
ENCFF234JVV.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 59.3 MB
ENCFF235HZG.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 60.0 MB
ENCFF244FZB.bam bam (alignments); assembly: GRCh38; genome annotation: V24 2.3 GB
ENCFF253MBV.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 59.7 MB
ENCFF299ZPF.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 58.5 MB
ENCFF303XGI.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 62.5 MB
ENCFF306LRJ.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 66.1 MB
ENCFF311IPI.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 51.7 MB
ENCFF313TIL.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF320ZDH.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF338PTW.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 4.1 MB
ENCFF346UYL.bam bam (alignments); assembly: hg19; genome annotation: V19 3.5 GB
ENCFF355PAP.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF360NWL.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 67.3 MB
ENCFF362QHE.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF381DZK.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF381ZNO.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 77.3 MB
ENCFF390BDI.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 65.2 MB
ENCFF406BDV.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 55.3 MB
ENCFF412MFU.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.3 MB
ENCFF416FHU.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 75.3 MB
ENCFF427SIH.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 55.7 MB
ENCFF432BDU.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF435LJM.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 59.1 MB
ENCFF449RNE.bam bam (alignments); assembly: hg19; genome annotation: V19 2.3 GB
ENCFF455AIU.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 68.5 MB
ENCFF462CCU.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.7 MB
ENCFF468ATF.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 66.7 MB
ENCFF473DUQ.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.7 GB
ENCFF511VXR.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 69.6 MB
ENCFF533HSQ.bam bam (alignments); assembly: GRCh38; genome annotation: V24 2.9 GB
ENCFF540ZBL.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 56.6 MB
ENCFF550CTA.bam bam (alignments); assembly: hg19; genome annotation: V19 2.9 GB
ENCFF554JWM.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 5.4 GB
ENCFF564IRJ.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 2.6 MB
ENCFF583GWU.bam bam (alignments); assembly: hg19; genome annotation: V19 2.3 GB
ENCFF606VLZ.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 65.2 MB
ENCFF625QIB.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 65.2 MB
ENCFF627DFL.fastq fastq (reads) 2.2 GB
ENCFF631VQP.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 3.7 GB
ENCFF635XTA.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF639JXD.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 65.1 MB
ENCFF660WJN.fastq fastq (reads) 1.7 GB
ENCFF672QYT.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 66.1 MB
ENCFF681VNB.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 4.3 GB
ENCFF682EZT.fastq fastq (reads) 1.7 GB
ENCFF716UDA.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF722YSS.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 68.3 MB
ENCFF763BUS.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 65.9 MB
ENCFF764FQB.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 76.3 MB
ENCFF770ZAJ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 67.5 MB
ENCFF776GKA.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 25.0 MB
ENCFF777VKB.bam bam (alignments); assembly: hg19; genome annotation: V19 2.9 GB
ENCFF801DTR.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 56.1 MB
ENCFF822YJD.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.3 MB
ENCFF824AOC.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 5.6 MB
ENCFF837WPF.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 58.3 MB
ENCFF868PEN.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 58.1 MB
ENCFF870ZIN.bam bam (alignments); assembly: GRCh38; genome annotation: V29 3.7 GB
ENCFF874KHJ.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 66.7 MB
ENCFF881UQN.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF883UFI.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 64.2 MB
ENCFF888UJW.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 66.0 MB
ENCFF901WES.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 3.7 GB
ENCFF908NLO.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 56.6 MB
ENCFF910AIX.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 59.8 MB
ENCFF912MRS.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 65.3 MB
ENCFF919CQH.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF934GWC.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 55.0 MB
ENCFF934UNG.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 63.9 MB
ENCFF946JWQ.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 58.4 MB
ENCFF952LDZ.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 4.7 GB
ENCFF975GDO.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 2.9 MB
ENCSR923NKN ENCSR · via encode_api

eCLIP experiment on K562 against DDX55

Homo sapiens

36 data files
FileTypeSize
ENCFF002PZE.bigBed bigBed (peaks); assembly: hg19 1.7 MB
ENCFF017KKV.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 11.4 MB
ENCFF022MZM.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 11.2 MB
ENCFF025OMD.bed bed (peaks); assembly: GRCh38 319.2 KB
ENCFF054ENI.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 11.5 MB
ENCFF099PFC.bed bed (peaks); assembly: hg19 1.1 MB
ENCFF103HVH.bigBed bigBed (peaks); assembly: hg19 2.4 MB
ENCFF162LAM.bam bam (alignments); assembly: GRCh38 212.5 MB
ENCFF236ERM.bigBed bigBed (peaks); assembly: hg19 3.0 MB
ENCFF242QPD.bed bed (peaks); assembly: GRCh38 213.6 KB
ENCFF299UUC.bed bed (peaks); assembly: hg19 843.6 KB
ENCFF358GUT.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 12.5 MB
ENCFF367CBZ.bigBed bigBed (peaks); assembly: GRCh38 2.4 MB
ENCFF401XTL.bed bed (peaks); assembly: GRCh38 1.0 MB
ENCFF411WKH.bed bed (peaks); assembly: GRCh38 1.2 MB
ENCFF432FVJ.bed bed (peaks); assembly: hg19 1.2 MB
ENCFF438QZI.fastq fastq (reads) 462.9 MB
ENCFF456WXJ.bed bed (peaks); assembly: hg19 611.8 KB
ENCFF462WAI.bed bed (peaks); assembly: GRCh38 24.5 KB
ENCFF492LNE.bam bam (alignments); assembly: hg19 222.8 MB
ENCFF553EAL.bam bam (alignments); assembly: GRCh38 207.5 MB
ENCFF641VGX.bigBed bigBed (peaks); assembly: GRCh38 568.1 KB
ENCFF667IWN.fastq fastq (reads) 448.2 MB
ENCFF727XDH.bed bed (peaks); assembly: hg19 24.6 KB
ENCFF782ZSQ.fastq fastq (reads) 438.5 MB
ENCFF786BMN.bigBed bigBed (peaks); assembly: GRCh38 759.8 KB
ENCFF790YXZ.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 11.9 MB
ENCFF791CPI.bigBed bigBed (peaks); assembly: hg19 1.3 MB
ENCFF802ALB.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 11.7 MB
ENCFF809OXJ.bigBed bigBed (peaks); assembly: GRCh38 2.2 MB
ENCFF826HOQ.bam bam (alignments); assembly: hg19 219.9 MB
ENCFF837TPV.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 12.0 MB
ENCFF898EQT.bigBed bigBed (peaks); assembly: hg19 2.3 MB
ENCFF935KUR.bigBed bigBed (peaks); assembly: hg19 2.0 MB
ENCFF986LSQ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 12.0 MB
ENCFF992HTJ.fastq fastq (reads) 426.2 MB
ENCSR580MFX ENCSR · via encode_api

eCLIP experiment on HepG2 against SUPV3L1

Homo sapiens

34 data files
FileTypeSize
ENCFF029CXE.bigBed bigBed (peaks); assembly: GRCh38 1.4 MB
ENCFF089NRQ.bed bed (peaks); assembly: hg19 808.5 KB
ENCFF174JYZ.bigBed bigBed (peaks); assembly: hg19 1.9 MB
ENCFF186QJV.bed bed (peaks); assembly: GRCh38 1.1 MB
ENCFF204ENL.bigBed bigBed (peaks); assembly: GRCh38 320.6 KB
ENCFF269FJC.bigBed bigBed (peaks); assembly: hg19 914.0 KB
ENCFF275EAZ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 11.9 MB
ENCFF300RXV.fastq fastq (reads) 542.9 MB
ENCFF349HRX.fastq fastq (reads) 547.5 MB
ENCFF429MXX.bam bam (alignments); assembly: hg19 215.6 MB
ENCFF435HVG.bigBed bigBed (peaks); assembly: hg19 1.4 MB
ENCFF494KCY.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 5.7 MB
ENCFF513URC.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 5.6 MB
ENCFF523XIE.bed bed (peaks); assembly: GRCh38 146.4 KB
ENCFF546OJL.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 5.9 MB
ENCFF553BGD.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 11.5 MB
ENCFF576FDV.bed bed (peaks); assembly: hg19 449.9 KB
ENCFF579FWN.bed bed (peaks); assembly: GRCh38 775.8 KB
ENCFF590AHU.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 5.8 MB
ENCFF591UBR.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 11.7 MB
ENCFF728OEM.fastq fastq (reads) 435.3 MB
ENCFF758EWI.bed bed (peaks); assembly: hg19 5.8 KB
ENCFF769YOB.bed bed (peaks); assembly: hg19 434.9 KB
ENCFF816LYN.bam bam (alignments); assembly: hg19 131.4 MB
ENCFF819APR.bigBed bigBed (peaks); assembly: GRCh38 1.8 MB
ENCFF853HTH.bam bam (alignments); assembly: GRCh38 208.8 MB
ENCFF882KLS.bed bed (peaks); assembly: hg19 1.1 MB
ENCFF939TVS.bigBed bigBed (peaks); assembly: hg19 905.9 KB
ENCFF941QMM.bam bam (alignments); assembly: GRCh38 124.4 MB
ENCFF956CPQ.fastq fastq (reads) 434.0 MB
ENCFF956RXA.bigBed bigBed (peaks); assembly: GRCh38 337.7 KB
ENCFF958YAU.bed bed (peaks); assembly: GRCh38 137.4 KB
ENCFF964HSA.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 11.3 MB
ENCFF999ZAW.bed bed (peaks); assembly: GRCh38 6.1 KB
ENCSR653HQC ENCSR · via encode_api

eCLIP experiment on K562 against DROSHA

Homo sapiens

36 data files
FileTypeSize
ENCFF010IIF.bed bed (peaks) 208.1 KB
ENCFF013WVP.bigBed bigBed (peaks) 1.0 MB
ENCFF043IMA.bigWig bigWig (minus strand signal of unique reads) 19.8 MB
ENCFF073ILV.fastq fastq (reads) 801.4 MB
ENCFF121SZH.bigBed bigBed (peaks) 2.3 MB
ENCFF150EWC.bigWig bigWig (plus strand signal of unique reads) 20.7 MB
ENCFF171GUD.bigBed bigBed (peaks) 4.5 MB
ENCFF200MRU.bigWig bigWig (plus strand signal of unique reads) 10.1 MB
ENCFF204MHI.bigWig bigWig (minus strand signal of unique reads) 20.1 MB
ENCFF233UZH.bam bam (alignments) 409.8 MB
ENCFF238REI.bed bed (peaks) 83.9 KB
ENCFF281LQY.bigBed bigBed (peaks) 560.2 KB
ENCFF307CXZ.fastq fastq (reads) 834.3 MB
ENCFF314RBZ.bed bed (peaks) 2.3 MB
ENCFF353HQK.bigWig bigWig (minus strand signal of unique reads) 9.5 MB
ENCFF414EPW.bigBed bigBed (peaks) 4.5 MB
ENCFF434GPP.bam bam (alignments) 420.7 MB
ENCFF516OAW.bed bed (peaks) 1.1 MB
ENCFF517LEW.bigWig bigWig (plus strand signal of unique reads) 10.2 MB
ENCFF521GGC.fastq fastq (reads) 887.2 MB
ENCFF541YAM.fastq fastq (reads) 847.1 MB
ENCFF573IWM.bigBed bigBed (peaks) 475.1 KB
ENCFF586TBP.bigBed bigBed (peaks) 1.9 MB
ENCFF602ZLI.bed bed (peaks) 1.1 MB
ENCFF622ODF.bed bed (peaks) 193.3 KB
ENCFF637FTL.bam bam (alignments) 175.4 MB
ENCFF661XXP.bigWig bigWig (plus strand signal of unique reads) 21.0 MB
ENCFF700GQU.bigWig bigWig (minus strand signal of unique reads) 9.7 MB
ENCFF736UCQ.bed bed (peaks) 529.5 KB
ENCFF773TEA.bam bam (alignments) 171.6 MB
ENCFF797BHU.bed bed (peaks) 84.0 KB
ENCFF816ATW.bigBed bigBed (peaks) 2.2 MB
ENCFF831EJT.bigBed bigBed (peaks) 1.9 MB
ENCFF840QVA.bed bed (peaks) 2.3 MB
ENCFF890JAE.bed bed (peaks) 593.4 KB
ENCFF915VZC.bigBed bigBed (peaks) 1.3 MB
ENCSR222SMI ENCSR · via encode_api

shRNA knockdown against RBM27 in HepG2 cells followed by RNA-seq. (RBM27_BGHLV18)

Homo sapiens

92 data files
FileTypeSize
ENCFF006KZA.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.0 GB
ENCFF015ZVH.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 102.3 MB
ENCFF024FWL.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 76.5 MB
ENCFF035CDE.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF096KZX.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 90.9 MB
ENCFF107UXQ.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 79.9 MB
ENCFF125KIZ.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.5 MB
ENCFF152UUK.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 89.8 MB
ENCFF166VQA.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 89.8 MB
ENCFF177KCH.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 97.5 MB
ENCFF177RWX.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF190NSV.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 79.9 MB
ENCFF193OIG.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 108.4 MB
ENCFF206ZFI.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 111.1 MB
ENCFF209LHJ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 100.2 MB
ENCFF225HNX.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 78.0 MB
ENCFF228EPR.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 5.8 GB
ENCFF232ONU.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 92.1 MB
ENCFF241FYW.bam bam (alignments); assembly: hg19; genome annotation: V19 6.8 GB
ENCFF253JQB.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 100.1 MB
ENCFF302CBE.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 3.6 MB
ENCFF344DQY.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 109.2 MB
ENCFF356EJT.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 97.6 MB
ENCFF359ISM.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 92.7 MB
ENCFF372IRX.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF377BGQ.bam bam (alignments); assembly: hg19; genome annotation: V19 4.0 GB
ENCFF389EVI.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 76.0 MB
ENCFF405BFY.bam bam (alignments); assembly: GRCh38; genome annotation: V29 7.0 GB
ENCFF417VJE.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 81.0 MB
ENCFF457JDA.bam bam (alignments); assembly: hg19; genome annotation: V19 5.8 GB
ENCFF480DSR.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 93.2 MB
ENCFF491ZUL.fastq fastq (reads) 2.6 GB
ENCFF530BTB.bam bam (alignments); assembly: hg19; genome annotation: V19 4.0 GB
ENCFF541ADT.bam bam (alignments); assembly: hg19; genome annotation: V19 4.7 GB
ENCFF542HCB.fastq fastq (reads) 3.7 GB
ENCFF543EPJ.bam bam (alignments); assembly: GRCh38; genome annotation: V24 7.0 GB
ENCFF545IWB.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 100.7 MB
ENCFF550MOX.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 80.0 MB
ENCFF554FMS.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 84.0 MB
ENCFF556RXO.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 91.4 MB
ENCFF567UNW.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 82.1 MB
ENCFF571PHT.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 75.6 MB
ENCFF582LXI.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 111.1 MB
ENCFF586XIW.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 97.9 MB
ENCFF594ICS.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF598ZON.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 8.6 GB
ENCFF632HEX.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 99.0 MB
ENCFF633DJB.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 100.4 MB
ENCFF656BZU.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF663NGD.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF668QGC.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.0 MB
ENCFF676BAS.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 4.3 MB
ENCFF677ELI.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 99.7 MB
ENCFF681YPI.bam bam (alignments); assembly: GRCh38; genome annotation: V29 4.8 GB
ENCFF682IYV.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 6.5 GB
ENCFF699DXS.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 82.2 MB
ENCFF700RLT.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 95.7 MB
ENCFF725YFX.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.8 GB
ENCFF733PFH.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 4.3 MB
ENCFF735PSO.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 82.3 MB
ENCFF742KDH.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.7 MB
ENCFF750JPK.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 89.5 MB
ENCFF758SGB.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 98.2 MB
ENCFF773ZAO.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 91.4 MB
ENCFF774RIQ.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF780OZZ.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 109.2 MB
ENCFF784WSC.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.9 MB
ENCFF786UEO.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 78.7 MB
ENCFF792NIO.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 90.0 MB
ENCFF819GEJ.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 82.5 MB
ENCFF824GAJ.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.4 MB
ENCFF827OZE.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 8.5 GB
ENCFF840SFN.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 5.6 MB
ENCFF844NNV.fastq fastq (reads) 3.8 GB
ENCFF850OKG.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF850XIH.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 82.1 MB
ENCFF853VPB.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF860COA.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 73.4 MB
ENCFF863RJJ.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 15.7 MB
ENCFF863TYQ.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 96.8 MB
ENCFF868JXH.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 79.4 MB
ENCFF884IPA.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 110.1 MB
ENCFF902HPG.fastq fastq (reads) 2.5 GB
ENCFF919TDH.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 94.3 MB
ENCFF921IIC.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 5.8 GB
ENCFF939GGY.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 9.6 GB
ENCFF951AAF.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF952IPO.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 77.7 MB
ENCFF963ZAD.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF964OSF.bam bam (alignments); assembly: hg19; genome annotation: V19 5.8 GB
ENCFF969WSQ.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.4 MB
ENCFF989HAQ.bam bam (alignments); assembly: GRCh38; genome annotation: V24 5.8 GB
ENCSR773QCC ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) pulldown experiment against PUF60

11 data files
FileTypeSize
ENCFF071TXE.fastq fastq (reads) 508.8 MB
ENCFF092OVI.fastq fastq (reads) 356.3 MB
ENCFF146LBG.tsv tsv (enrichment) 14.8 KB
ENCFF180NZG.tsv tsv (library fraction) 75.4 KB
ENCFF262OPY.fastq fastq (reads) 351.8 MB
ENCFF582QKC.tsv tsv (library fraction) 313.1 KB
ENCFF608KZB.tsv tsv (library fraction) 17.8 KB
ENCFF619SGN.tsv tsv (enrichment) 60.0 KB
ENCFF631TWR.tsv tsv (enrichment) 244.0 KB
ENCFF748VRH.fastq fastq (reads) 328.3 MB
ENCFF838ARR.fastq fastq (reads) 459.4 MB
ENCSR448JAM ENCSR · via encode_api

RNA-seq on K562 cells treated with an shRNA knockdown against ZC3H8. (ZC3H8_BGKLV38)

Homo sapiens

92 data files
FileTypeSize
ENCFF023LSK.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF027MMT.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 6.3 MB
ENCFF046KVW.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF072FRY.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 106.4 MB
ENCFF080IEN.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 4.6 MB
ENCFF098NLK.bam bam (alignments); assembly: hg19; genome annotation: V19 6.4 GB
ENCFF103STA.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 127.6 MB
ENCFF122VPY.fastq fastq (reads) 3.5 GB
ENCFF131VYN.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 108.1 MB
ENCFF146DUP.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 114.9 MB
ENCFF154XTC.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 131.5 MB
ENCFF210HCD.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 108.1 MB
ENCFF212RGZ.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.5 MB
ENCFF229PKC.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.5 MB
ENCFF233MFJ.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 114.6 MB
ENCFF235RYV.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 114.4 MB
ENCFF239SLT.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF257JTA.fastq fastq (reads) 3.5 GB
ENCFF260YUK.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF283LYM.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 7.6 GB
ENCFF291JUG.bam bam (alignments); assembly: GRCh38; genome annotation: V24 5.4 GB
ENCFF298CZQ.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 112.5 MB
ENCFF332ZBC.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 108.0 MB
ENCFF336QSD.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 130.3 MB
ENCFF365KXK.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 118.0 MB
ENCFF382LHJ.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 118.1 MB
ENCFF395RGK.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 114.9 MB
ENCFF408BUG.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 130.1 MB
ENCFF411UNW.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 130.5 MB
ENCFF414JRY.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 118.4 MB
ENCFF414WCA.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 7.9 GB
ENCFF421DKX.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 110.3 MB
ENCFF421RQA.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 110.3 MB
ENCFF431EPZ.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 115.2 MB
ENCFF433ZJS.bam bam (alignments); assembly: hg19; genome annotation: V19 5.2 GB
ENCFF446OVR.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 116.6 MB
ENCFF447WSN.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 5.6 MB
ENCFF461YFE.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF466XYZ.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF482NEO.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF501CFQ.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 103.6 MB
ENCFF543VBB.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 9.1 GB
ENCFF547ZBH.bam bam (alignments); assembly: GRCh38; genome annotation: V24 6.7 GB
ENCFF557BHK.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 130.1 MB
ENCFF574CZD.bam bam (alignments); assembly: GRCh38; genome annotation: V24 6.6 GB
ENCFF577BNO.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 117.0 MB
ENCFF586OQS.bam bam (alignments); assembly: hg19; genome annotation: V19 5.1 GB
ENCFF599GLN.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF602OKY.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 18.5 MB
ENCFF606LUR.fastq fastq (reads) 3.6 GB
ENCFF608IAH.bam bam (alignments); assembly: GRCh38; genome annotation: V24 5.3 GB
ENCFF630SGV.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 116.6 MB
ENCFF631IBG.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.7 MB
ENCFF634YSW.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 113.9 MB
ENCFF635XIV.bam bam (alignments); assembly: hg19; genome annotation: V19 6.3 GB
ENCFF645WSU.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 114.6 MB
ENCFF646URX.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 108.8 MB
ENCFF650KVN.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.0 MB
ENCFF663LCH.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 7.9 GB
ENCFF666FXN.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 128.7 MB
ENCFF667BHO.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 117.7 MB
ENCFF676TNA.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.5 MB
ENCFF681MQI.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 117.4 MB
ENCFF687SCO.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 106.9 MB
ENCFF689OYG.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF702AHB.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 112.7 MB
ENCFF706SFG.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 131.7 MB
ENCFF714TLK.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 8.8 GB
ENCFF715FYV.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.5 MB
ENCFF746NAC.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 117.7 MB
ENCFF747AFW.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 3.0 MB
ENCFF770WWO.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 113.6 MB
ENCFF777LFB.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 7.7 GB
ENCFF792EFF.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 128.8 MB
ENCFF799UNK.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 129.0 MB
ENCFF856GDX.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 104.3 MB
ENCFF856GOA.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 119.6 MB
ENCFF860YYJ.bam bam (alignments); assembly: hg19; genome annotation: V19 5.1 GB
ENCFF863TYT.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 110.7 MB
ENCFF871YHE.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 116.1 MB
ENCFF888IWE.fastq fastq (reads) 3.5 GB
ENCFF891VYQ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 111.4 MB
ENCFF902JBD.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 120.3 MB
ENCFF909BJV.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 116.7 MB
ENCFF927ZZH.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 4.9 MB
ENCFF935UOX.bam bam (alignments); assembly: GRCh38; genome annotation: V29 6.6 GB
ENCFF951MTC.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF954QOY.bam bam (alignments); assembly: GRCh38; genome annotation: V29 6.7 GB
ENCFF956MON.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 117.6 MB
ENCFF968ZAO.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 130.2 MB
ENCFF978KPY.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 129.1 MB
ENCFF985ZTH.bam bam (alignments); assembly: hg19; genome annotation: V19 5.2 GB
ENCSR676EKU ENCSR · via encode_api

RNA-seq on HepG2 cells treated with an shRNA knockdown against CPSF6. (CPSF6_BGHLV35)

Homo sapiens

92 data files
FileTypeSize
ENCFF021GGI.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 75.5 MB
ENCFF051WWT.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 56.4 MB
ENCFF052JGS.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.5 GB
ENCFF058FIU.bam bam (alignments); assembly: GRCh38; genome annotation: V24 6.0 GB
ENCFF071JWG.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 14.6 MB
ENCFF086DEP.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 70.4 MB
ENCFF086QPV.fastq fastq (reads) 2.5 GB
ENCFF087KAM.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.3 MB
ENCFF101OOH.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 25.0 MB
ENCFF129ELL.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 63.6 MB
ENCFF150VPE.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 69.5 MB
ENCFF165ESF.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 60.9 MB
ENCFF176IWC.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 60.6 MB
ENCFF176OFE.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 62.1 MB
ENCFF183DNU.bam bam (alignments); assembly: hg19; genome annotation: V19 5.7 GB
ENCFF198GSR.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 6.7 GB
ENCFF200OVJ.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 57.4 MB
ENCFF210QTA.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 62.1 MB
ENCFF214BGF.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 5.6 MB
ENCFF227YXF.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 66.2 MB
ENCFF240TMB.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 69.6 MB
ENCFF241XMY.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 62.3 MB
ENCFF243BWM.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 66.7 MB
ENCFF257MDW.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 61.9 MB
ENCFF261NQH.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 61.1 MB
ENCFF266CPC.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 52.4 MB
ENCFF290RXR.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.4 MB
ENCFF317BIK.fastq fastq (reads) 3.3 GB
ENCFF320JIK.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 60.8 MB
ENCFF330NJI.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 75.9 MB
ENCFF337XZQ.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 66.8 MB
ENCFF341EXC.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 74.7 MB
ENCFF344GEM.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 57.9 MB
ENCFF356FWB.bam bam (alignments); assembly: hg19; genome annotation: V19 4.8 GB
ENCFF365ODU.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 61.0 MB
ENCFF372RMF.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 7.6 GB
ENCFF378QKG.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 68.2 MB
ENCFF382ZOU.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.9 MB
ENCFF395ZWT.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.7 GB
ENCFF404CLI.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 75.9 MB
ENCFF412YDN.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 5.9 GB
ENCFF416SUA.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 60.6 MB
ENCFF416WBD.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 66.8 MB
ENCFF448SHE.fastq fastq (reads) 3.3 GB
ENCFF467XXY.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 61.0 MB
ENCFF473ZWE.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 61.8 MB
ENCFF476YSS.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF487SET.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 76.7 MB
ENCFF528WKP.bam bam (alignments); assembly: GRCh38; genome annotation: V24 5.0 GB
ENCFF548SDP.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF554HIJ.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 60.1 MB
ENCFF557MCG.bam bam (alignments); assembly: GRCh38; genome annotation: V29 6.0 GB
ENCFF568UDY.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 4.4 MB
ENCFF573EEK.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 68.2 MB
ENCFF589LXN.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.5 MB
ENCFF612IAM.bam bam (alignments); assembly: GRCh38; genome annotation: V29 4.5 GB
ENCFF612MOA.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 5.2 GB
ENCFF643QEQ.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 65.5 MB
ENCFF657FCV.bam bam (alignments); assembly: hg19; genome annotation: V19 4.4 GB
ENCFF659USR.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.4 MB
ENCFF661GNU.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.7 MB
ENCFF665TPM.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.3 MB
ENCFF670QBT.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 55.9 MB
ENCFF671JUM.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 25.0 MB
ENCFF678VCI.bam bam (alignments); assembly: hg19; genome annotation: V19 3.7 GB
ENCFF696ZHR.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 3.0 MB
ENCFF705NJJ.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 68.9 MB
ENCFF713OCI.bam bam (alignments); assembly: hg19; genome annotation: V19 4.8 GB
ENCFF725RZR.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 53.6 MB
ENCFF726ELT.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 61.8 MB
ENCFF733IJQ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 68.4 MB
ENCFF733JWN.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 5.2 GB
ENCFF735SKN.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 6.7 GB
ENCFF743USW.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 58.1 MB
ENCFF768TVP.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 66.9 MB
ENCFF785VKW.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 57.5 MB
ENCFF792FEX.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 67.6 MB
ENCFF794SXR.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 69.6 MB
ENCFF806MYZ.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 70.4 MB
ENCFF806WSX.bam bam (alignments); assembly: hg19; genome annotation: V19 3.7 GB
ENCFF847XAB.fastq fastq (reads) 2.6 GB
ENCFF851IBN.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 3.7 MB
ENCFF853JLU.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF866KFG.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 59.2 MB
ENCFF889VPU.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF913EOV.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.9 MB
ENCFF914YGZ.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 56.9 MB
ENCFF934TLV.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.0 MB
ENCFF949MGA.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 76.7 MB
ENCFF952XYH.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF996EJB.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF998LAJ.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 62.7 MB
ENCSR166MWM ENCSR · via encode_api

RNA-seq on HepG2 cells treated with a CRISPR gRNA against RBM14. (RBM14-BGHcLV07)

Homo sapiens

92 data files
FileTypeSize
ENCFF024ENI.fastq fastq (reads) 2.0 GB
ENCFF032BYZ.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.0 MB
ENCFF033CEZ.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 4.7 GB
ENCFF034VSL.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 71.8 MB
ENCFF042WLU.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 5.0 GB
ENCFF059ZHV.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 56.2 MB
ENCFF106EDL.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 54.5 MB
ENCFF135IKG.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 71.7 MB
ENCFF175CBS.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 51.7 MB
ENCFF179SFH.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 60.7 MB
ENCFF196CRU.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 70.2 MB
ENCFF207SLM.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 48.9 MB
ENCFF211NFN.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 64.6 MB
ENCFF230VXB.bam bam (alignments); assembly: hg19; genome annotation: V19 2.5 GB
ENCFF235QUA.bam bam (alignments); assembly: GRCh38; genome annotation: V29 3.1 GB
ENCFF245TOQ.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 61.9 MB
ENCFF261UUJ.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF268ITM.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF270PBD.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 4.1 GB
ENCFF282EUC.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 70.4 MB
ENCFF290AXV.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 55.5 MB
ENCFF291KXN.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 57.1 MB
ENCFF296SYN.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 53.7 MB
ENCFF301UTK.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 62.9 MB
ENCFF307MNM.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 70.4 MB
ENCFF334MQT.fastq fastq (reads) 1.9 GB
ENCFF341DUQ.bam bam (alignments); assembly: hg19; genome annotation: V19 2.5 GB
ENCFF348VOH.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 63.0 MB
ENCFF349NPY.bam bam (alignments); assembly: GRCh38; genome annotation: V24 2.6 GB
ENCFF370YHX.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF371YNU.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 64.7 MB
ENCFF376KPN.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 64.0 MB
ENCFF376YSD.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF381PJV.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 62.4 MB
ENCFF383HTC.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF400SNJ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 54.1 MB
ENCFF403EMB.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 64.1 MB
ENCFF412MFS.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 4.1 MB
ENCFF420CHQ.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.3 MB
ENCFF421WEQ.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 56.2 MB
ENCFF423OCV.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 55.4 MB
ENCFF443XDG.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 65.3 MB
ENCFF450LTJ.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 54.8 MB
ENCFF457RHR.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.7 MB
ENCFF462PKS.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 61.9 MB
ENCFF483STM.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF492IFU.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 61.9 MB
ENCFF525MMY.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 63.5 MB
ENCFF528VOI.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 4.1 GB
ENCFF547TZG.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 5.6 MB
ENCFF551KKA.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 2.9 MB
ENCFF561JMT.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 64.6 MB
ENCFF575OLT.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 50.2 MB
ENCFF602BZZ.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 62.8 MB
ENCFF619IVH.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 12.2 MB
ENCFF638LQJ.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.8 MB
ENCFF658EPF.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 59.8 MB
ENCFF663MDE.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF663MTX.bam bam (alignments); assembly: GRCh38; genome annotation: V29 3.3 GB
ENCFF675UUR.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 56.4 MB
ENCFF677XQL.bam bam (alignments); assembly: hg19; genome annotation: V19 2.6 GB
ENCFF701QXU.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF707XYI.bam bam (alignments); assembly: hg19; genome annotation: V19 3.2 GB
ENCFF718AHM.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 69.1 MB
ENCFF723JXT.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 2.6 MB
ENCFF726MXW.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF727DUM.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF732HIC.fastq fastq (reads) 1.9 GB
ENCFF733CPS.bam bam (alignments); assembly: GRCh38; genome annotation: V24 2.6 GB
ENCFF734OPS.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 55.9 MB
ENCFF755HVU.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 52.0 MB
ENCFF770HMC.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 63.0 MB
ENCFF779FLC.bam bam (alignments); assembly: hg19; genome annotation: V19 2.6 GB
ENCFF804GGC.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.1 GB
ENCFF818DHH.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 61.5 MB
ENCFF834RFI.fastq fastq (reads) 1.9 GB
ENCFF838LYM.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 4.4 GB
ENCFF848HCF.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 52.7 MB
ENCFF851RWX.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF857EWZ.bam bam (alignments); assembly: hg19; genome annotation: V19 3.1 GB
ENCFF859VGH.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF870PUS.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 55.2 MB
ENCFF874URL.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 59.3 MB
ENCFF875CRR.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.3 GB
ENCFF886JFY.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 62.9 MB
ENCFF892WDI.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 56.1 MB
ENCFF911ALV.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 53.2 MB
ENCFF921YPK.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 61.9 MB
ENCFF950KEC.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 4.3 GB
ENCFF958UPG.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 54.8 MB
ENCFF978GIY.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.3 MB
ENCFF996FJU.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 60.8 MB
ENCSR927SLP ENCSR · via encode_api

shRNA knockdown against LIN28B in HepG2 cells followed by RNA-seq. (LIN28B_BGHLV18)

Homo sapiens

92 data files
FileTypeSize
ENCFF040ZEI.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 5.6 MB
ENCFF048JWB.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 68.8 MB
ENCFF050MEX.bam bam (alignments); assembly: hg19; genome annotation: V19 3.8 GB
ENCFF059DPR.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 85.2 MB
ENCFF059TDX.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 77.8 MB
ENCFF061UWY.fastq fastq (reads) 2.5 GB
ENCFF066BLA.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF096RPM.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 75.4 MB
ENCFF110SVH.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF160LGS.bam bam (alignments); assembly: GRCh38; genome annotation: V29 4.7 GB
ENCFF170MXT.bam bam (alignments); assembly: hg19; genome annotation: V19 3.8 GB
ENCFF174GCN.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 72.2 MB
ENCFF177LDE.bam bam (alignments); assembly: hg19; genome annotation: V19 3.8 GB
ENCFF192GXM.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF198LWC.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 81.9 MB
ENCFF201YIH.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 75.0 MB
ENCFF209QAN.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 82.5 MB
ENCFF264QTC.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.9 MB
ENCFF272AFH.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 76.5 MB
ENCFF273OSB.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 73.5 MB
ENCFF279MZP.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF284RMH.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 69.4 MB
ENCFF301PLJ.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 71.1 MB
ENCFF313LXP.bam bam (alignments); assembly: GRCh38; genome annotation: V29 4.6 GB
ENCFF318QUL.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 72.3 MB
ENCFF332WNW.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF334WSM.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 6.3 GB
ENCFF336NJQ.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 78.3 MB
ENCFF341CQQ.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 74.1 MB
ENCFF344ZTH.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF353IEV.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 70.3 MB
ENCFF371ZGB.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 72.0 MB
ENCFF374TMW.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 70.7 MB
ENCFF408ULB.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 75.3 MB
ENCFF412OPT.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 73.2 MB
ENCFF444HBP.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.9 GB
ENCFF446IUZ.bam bam (alignments); assembly: hg19; genome annotation: V19 4.4 GB
ENCFF449MBN.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 75.1 MB
ENCFF480LZA.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF489OAS.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.7 MB
ENCFF489SIB.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 5.6 GB
ENCFF499BYZ.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF503QAO.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 83.3 MB
ENCFF511GIN.bam bam (alignments); assembly: hg19; genome annotation: V19 4.4 GB
ENCFF529PFP.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 73.6 MB
ENCFF554WYU.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.6 MB
ENCFF561OCQ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 77.2 MB
ENCFF562DJZ.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 85.5 MB
ENCFF575YFF.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 84.0 MB
ENCFF584JLO.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 73.5 MB
ENCFF592JWO.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.6 GB
ENCFF593FHR.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 84.1 MB
ENCFF598HWZ.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 75.4 MB
ENCFF598LVW.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 5.6 GB
ENCFF599BJA.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 5.6 GB
ENCFF599HBZ.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF604SKH.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 83.3 MB
ENCFF637ELV.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 3.3 MB
ENCFF641GET.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 74.7 MB
ENCFF655RIO.fastq fastq (reads) 2.4 GB
ENCFF663RZD.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 67.5 MB
ENCFF677RFF.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 76.9 MB
ENCFF682XCR.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 74.9 MB
ENCFF708TBB.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.4 MB
ENCFF715DSE.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 3.9 MB
ENCFF715LGR.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 76.3 MB
ENCFF720QNY.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 76.9 MB
ENCFF721EBG.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 71.9 MB
ENCFF732IMS.bam bam (alignments); assembly: hg19; genome annotation: V19 3.8 GB
ENCFF736IYV.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 73.9 MB
ENCFF744GRY.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.7 GB
ENCFF774MNW.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.4 MB
ENCFF777MQI.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 73.6 MB
ENCFF808ZTW.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 85.5 MB
ENCFF815ZQA.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 81.3 MB
ENCFF825CEE.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF840BKE.fastq fastq (reads) 2.5 GB
ENCFF854XPZ.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.8 GB
ENCFF865NUG.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF877WPE.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF903MOK.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 74.2 MB
ENCFF910OAA.fastq fastq (reads) 2.4 GB
ENCFF925GJW.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 4.3 MB
ENCFF958UJG.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 15.3 MB
ENCFF959QLP.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 5.6 GB
ENCFF963ERT.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 84.1 MB
ENCFF969ZTT.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 77.2 MB
ENCFF979XKG.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 6.3 GB
ENCFF980XBH.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 69.4 MB
ENCFF986JJU.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 75.4 MB
ENCFF986XAF.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 81.9 MB
ENCFF998WWN.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 76.0 MB
ENCSR818TZM ENCSR · via encode_api

RNA-seq on K562 cells treated with an shRNA knockdown against UTP3. (UTP3-BGKLV38-B)

Homo sapiens

92 data files
FileTypeSize
ENCFF005SZK.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 121.8 MB
ENCFF008WPQ.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 100.5 MB
ENCFF009EXS.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 110.4 MB
ENCFF016FFU.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 88.2 MB
ENCFF035CDQ.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 76.6 MB
ENCFF042OJS.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 123.4 MB
ENCFF059FKY.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 107.4 MB
ENCFF070WKZ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 103.2 MB
ENCFF077APU.fastq fastq (reads) 1.9 GB
ENCFF093BRH.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 107.8 MB
ENCFF100FFZ.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 72.8 MB
ENCFF105WMI.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF114DAA.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF139REJ.bam bam (alignments); assembly: GRCh38; genome annotation: V29 3.5 GB
ENCFF166XSJ.fastq fastq (reads) 1.9 GB
ENCFF189CYK.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 78.2 MB
ENCFF200SJL.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 110.0 MB
ENCFF228JDO.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF236CLD.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 71.2 MB
ENCFF245APW.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF245KLX.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 99.7 MB
ENCFF245WLL.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 107.5 MB
ENCFF255AOZ.bam bam (alignments); assembly: hg19; genome annotation: V19 4.5 GB
ENCFF257WRB.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.5 MB
ENCFF259XAV.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.5 MB
ENCFF262DAP.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 4.2 GB
ENCFF262VBF.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 78.4 MB
ENCFF277YMR.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF280EPD.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 122.0 MB
ENCFF294ZCK.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 121.8 MB
ENCFF342JHX.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.9 MB
ENCFF343RCW.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 7.1 GB
ENCFF344MWP.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 15.4 MB
ENCFF347CGY.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 77.4 MB
ENCFF352JTG.bam bam (alignments); assembly: hg19; genome annotation: V19 4.5 GB
ENCFF360HRC.bam bam (alignments); assembly: hg19; genome annotation: V19 2.7 GB
ENCFF375XGG.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 87.1 MB
ENCFF394XQN.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF395WEG.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 120.3 MB
ENCFF396THL.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 8.1 GB
ENCFF407QYH.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 88.2 MB
ENCFF415FVE.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF415KKE.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 74.5 MB
ENCFF417MEP.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 75.5 MB
ENCFF435KLJ.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 79.6 MB
ENCFF444GHI.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 77.7 MB
ENCFF459ZEG.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 77.9 MB
ENCFF476XXI.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 87.1 MB
ENCFF488FJF.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 76.9 MB
ENCFF504ERX.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 74.2 MB
ENCFF504IRL.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 123.5 MB
ENCFF506CWI.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 110.9 MB
ENCFF507HBP.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF514EBL.fastq fastq (reads) 3.2 GB
ENCFF530FBH.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.0 MB
ENCFF537TJE.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 4.4 MB
ENCFF546LLB.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 110.2 MB
ENCFF551AXT.bam bam (alignments); assembly: hg19; genome annotation: V19 3.3 GB
ENCFF552DNZ.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 7.0 GB
ENCFF577YUQ.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 86.6 MB
ENCFF592SJZ.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 108.8 MB
ENCFF601RTZ.bam bam (alignments); assembly: GRCh38; genome annotation: V24 5.6 GB
ENCFF603SHC.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.4 MB
ENCFF608RUN.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 102.0 MB
ENCFF613QHD.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 4.8 GB
ENCFF620DBT.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 110.0 MB
ENCFF639WVL.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 69.0 MB
ENCFF662ZBY.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 4.8 MB
ENCFF675JDB.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 75.6 MB
ENCFF680HSR.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 85.5 MB
ENCFF686ZPD.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 98.6 MB
ENCFF688KBP.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 96.0 MB
ENCFF695DKH.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 105.9 MB
ENCFF699MWS.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF706KHZ.fastq fastq (reads) 3.3 GB
ENCFF722LUG.bam bam (alignments); assembly: GRCh38; genome annotation: V24 2.8 GB
ENCFF734PGY.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 75.9 MB
ENCFF762BSV.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.5 GB
ENCFF763MHW.bam bam (alignments); assembly: GRCh38; genome annotation: V29 5.6 GB
ENCFF769RHI.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 107.4 MB
ENCFF793ZGY.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 4.2 GB
ENCFF803RQL.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 5.5 MB
ENCFF812GFC.bam bam (alignments); assembly: hg19; genome annotation: V19 5.5 GB
ENCFF843EGZ.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.8 MB
ENCFF875OIH.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF940DNH.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 112.9 MB
ENCFF949USL.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF950LCT.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 72.6 MB
ENCFF959AQG.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 67.2 MB
ENCFF969MWF.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.5 GB
ENCFF987PAI.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 3.9 MB
ENCFF993VYO.bam bam (alignments); assembly: hg19; genome annotation: V19 2.6 GB
ENCSR618IQH ENCSR · via encode_api

RNA-seq on K562 cells treated with an shRNA knockdown against PUS1. (PUS1_BGKLV32)

Homo sapiens

92 data files
FileTypeSize
ENCFF026KAZ.fastq fastq (reads) 5.3 GB
ENCFF041MWW.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 10.7 GB
ENCFF062WYW.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.7 MB
ENCFF079CYX.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 107.8 MB
ENCFF081FRK.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 93.9 MB
ENCFF098CVZ.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 138.6 MB
ENCFF114GYF.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 114.5 MB
ENCFF117ZDF.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 127.7 MB
ENCFF157OSI.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 96.9 MB
ENCFF160QDQ.bam bam (alignments); assembly: hg19; genome annotation: V19 7.9 GB
ENCFF161LDD.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 123.3 MB
ENCFF166GXV.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF167BIH.fastq fastq (reads) 3.3 GB
ENCFF181CYU.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 108.0 MB
ENCFF185DVW.bam bam (alignments); assembly: hg19; genome annotation: V19 5.0 GB
ENCFF197OBG.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 16.6 MB
ENCFF219GVM.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 110.4 MB
ENCFF312OPM.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 92.2 MB
ENCFF319COC.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 139.9 MB
ENCFF333LLL.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF334MHB.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 97.3 MB
ENCFF339QXL.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 99.3 MB
ENCFF350BOO.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 122.6 MB
ENCFF351IZO.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.4 MB
ENCFF362QIV.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 97.5 MB
ENCFF363WYR.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 126.9 MB
ENCFF364LVH.bam bam (alignments); assembly: GRCh38; genome annotation: V24 10.6 GB
ENCFF364WXC.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 112.6 MB
ENCFF382NFR.bam bam (alignments); assembly: GRCh38; genome annotation: V24 8.5 GB
ENCFF387LKP.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 4.5 MB
ENCFF390YTE.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 100.6 MB
ENCFF391ZJK.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 118.1 MB
ENCFF402BNO.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 138.6 MB
ENCFF407BHA.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 99.9 MB
ENCFF430HRQ.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 96.9 MB
ENCFF449FHG.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 100.6 MB
ENCFF468MNF.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 94.3 MB
ENCFF499LUT.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 10.8 GB
ENCFF531FHO.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.5 MB
ENCFF549TCF.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 96.6 MB
ENCFF560POZ.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 110.3 MB
ENCFF569YWF.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 114.1 MB
ENCFF576MGG.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.4 MB
ENCFF580KVK.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 3.0 MB
ENCFF584XZO.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 124.2 MB
ENCFF598ODP.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF616BIS.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 6.5 GB
ENCFF618OAY.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF622DGS.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 86.5 MB
ENCFF623QKM.bam bam (alignments); assembly: GRCh38; genome annotation: V29 6.7 GB
ENCFF628GPO.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 118.2 MB
ENCFF634IFB.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 136.6 MB
ENCFF652BZV.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 124.2 MB
ENCFF691SSF.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.9 MB
ENCFF709VES.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 5.5 MB
ENCFF711DBY.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 107.9 MB
ENCFF715VMY.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 126.4 MB
ENCFF722UNY.bam bam (alignments); assembly: hg19; genome annotation: V19 9.6 GB
ENCFF723LDN.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.4 MB
ENCFF725RGD.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 89.8 MB
ENCFF734JOA.fastq fastq (reads) 3.3 GB
ENCFF741YZE.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF754SAP.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 117.1 MB
ENCFF755TFN.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 123.0 MB
ENCFF760EQC.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 4.6 MB
ENCFF769FYD.bam bam (alignments); assembly: GRCh38; genome annotation: V24 5.4 GB
ENCFF775UPA.bam bam (alignments); assembly: hg19; genome annotation: V19 6.0 GB
ENCFF782GIX.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.5 MB
ENCFF787OYQ.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 89.5 MB
ENCFF796KSS.bam bam (alignments); assembly: hg19; genome annotation: V19 7.9 GB
ENCFF803ZMS.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 6.5 GB
ENCFF819VWL.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 127.6 MB
ENCFF831SXK.fastq fastq (reads) 5.4 GB
ENCFF837SUO.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 141.7 MB
ENCFF870PAI.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 121.3 MB
ENCFF873JLA.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 12.2 GB
ENCFF874QFZ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 92.7 MB
ENCFF883ATO.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 25.0 MB
ENCFF899DIB.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.0 MB
ENCFF899WJJ.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 89.6 MB
ENCFF902AYT.bam bam (alignments); assembly: hg19; genome annotation: V19 5.0 GB
ENCFF917EVO.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 96.6 MB
ENCFF923DHP.bam bam (alignments); assembly: GRCh38; genome annotation: V24 6.7 GB
ENCFF933PYZ.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 126.6 MB
ENCFF937OSQ.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.9 MB
ENCFF941DFX.bam bam (alignments); assembly: GRCh38; genome annotation: V29 10.6 GB
ENCFF946XUE.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 141.7 MB
ENCFF952LOB.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 122.7 MB
ENCFF959YLW.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 7.4 GB
ENCFF969WPR.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 110.3 MB
ENCFF976OYT.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.5 MB
ENCFF979PQM.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 6.5 MB
ENCSR959HPB ENCSR · via encode_api

RNA-seq on HepG2 cells treated with a CRISPR gRNA against NOLC1. (NOLC1-BGHcLV07)

Homo sapiens

92 data files
FileTypeSize
ENCFF005RNF.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 73.4 MB
ENCFF013RNY.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 83.2 MB
ENCFF029BNC.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 83.2 MB
ENCFF038JIQ.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 44.0 MB
ENCFF068EIN.bam bam (alignments); assembly: GRCh38; genome annotation: V24 5.0 GB
ENCFF075MKI.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 46.2 MB
ENCFF102NXQ.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 47.4 MB
ENCFF106NVR.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 74.5 MB
ENCFF110OQL.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF124EZR.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 11.9 MB
ENCFF125GVS.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 2.7 MB
ENCFF125NSQ.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 81.8 MB
ENCFF137VPJ.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 3.0 MB
ENCFF146QLB.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 3.5 GB
ENCFF148GNA.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 5.6 MB
ENCFF151JST.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 25.0 MB
ENCFF152VKK.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 67.5 MB
ENCFF169MDM.fastq fastq (reads) 1.7 GB
ENCFF172ZYU.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 51.4 MB
ENCFF180FJF.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.7 MB
ENCFF182NYT.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 72.5 MB
ENCFF202UBG.bam bam (alignments); assembly: GRCh38; genome annotation: V24 2.3 GB
ENCFF216RLK.bam bam (alignments); assembly: hg19; genome annotation: V19 2.3 GB
ENCFF220ZIY.bam bam (alignments); assembly: hg19; genome annotation: V19 2.3 GB
ENCFF238VPQ.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 51.3 MB
ENCFF267VHB.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 84.9 MB
ENCFF297IYY.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 75.6 MB
ENCFF298KNZ.bam bam (alignments); assembly: GRCh38; genome annotation: V29 5.0 GB
ENCFF303WWC.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 46.4 MB
ENCFF317ASQ.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 46.7 MB
ENCFF334NYD.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.5 MB
ENCFF337WPF.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 74.1 MB
ENCFF361YQY.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF374DXZ.fastq fastq (reads) 1.7 GB
ENCFF386QZD.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.4 MB
ENCFF403PFJ.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 73.6 MB
ENCFF409EOL.bam bam (alignments); assembly: hg19; genome annotation: V19 4.8 GB
ENCFF414NAW.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 47.4 MB
ENCFF416PUO.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 3.5 GB
ENCFF417UUE.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.8 MB
ENCFF425HIU.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 25.0 MB
ENCFF449YBN.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.9 MB
ENCFF475RBI.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 84.9 MB
ENCFF477UGA.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.0 MB
ENCFF485TNB.bam bam (alignments); assembly: GRCh38; genome annotation: V29 2.8 GB
ENCFF499HPK.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 69.5 MB
ENCFF503TOW.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 75.1 MB
ENCFF508NFG.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 70.5 MB
ENCFF542TRR.bam bam (alignments); assembly: hg19; genome annotation: V19 2.7 GB
ENCFF544QTV.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 47.4 MB
ENCFF561NLN.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 41.4 MB
ENCFF564AYP.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 52.4 MB
ENCFF564YLS.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 40.3 MB
ENCFF568ARE.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 71.5 MB
ENCFF588TSZ.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 52.4 MB
ENCFF597QVS.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 46.2 MB
ENCFF598LMR.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 4.0 GB
ENCFF605VJG.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 77.8 MB
ENCFF611WZI.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 44.2 MB
ENCFF612PJU.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF624POG.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 6.9 GB
ENCFF625AZS.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF634SYP.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 7.9 GB
ENCFF669JCY.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 76.2 MB
ENCFF674KIH.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.4 MB
ENCFF678SSZ.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF696AZP.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 83.2 MB
ENCFF700ITI.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF726SVT.bam bam (alignments); assembly: hg19; genome annotation: V19 3.9 GB
ENCFF738SCP.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 42.9 MB
ENCFF751WNY.fastq fastq (reads) 3.0 GB
ENCFF767AML.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 52.2 MB
ENCFF784KIA.fastq fastq (reads) 3.0 GB
ENCFF795QLC.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 4.1 MB
ENCFF802LGI.bam bam (alignments); assembly: GRCh38; genome annotation: V24 2.8 GB
ENCFF811BGQ.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 43.0 MB
ENCFF814TMX.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 46.2 MB
ENCFF815EXE.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 69.7 MB
ENCFF823LUB.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.2 MB
ENCFF828OVR.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 73.6 MB
ENCFF835ZUS.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 51.4 MB
ENCFF836ZLA.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 44.4 MB
ENCFF850GXB.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.4 MB
ENCFF853TTM.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 6.9 GB
ENCFF868KRJ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 76.6 MB
ENCFF870VHU.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 75.6 MB
ENCFF891QDW.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 47.4 MB
ENCFF910RDA.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 43.5 MB
ENCFF951LHM.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 45.8 MB
ENCFF967EKR.bam bam (alignments); assembly: hg19; genome annotation: V19 4.0 GB
ENCFF979GAM.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 75.6 MB
ENCFF995QSV.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.0 GB
ENCSR521WAI ENCSR · via encode_api

Control CRISPR gRNA against no target in HepG2 cells followed by RNA-seq. (NT-BGHcLV07)

Homo sapiens

84 data files
FileTypeSize
ENCFF054ESC.bam bam (alignments); assembly: GRCh38; genome annotation: V24 2.2 GB
ENCFF083SGP.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 55.0 MB
ENCFF089OMS.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 53.7 MB
ENCFF100BOV.bam bam (alignments); assembly: hg19; genome annotation: V19 2.6 GB
ENCFF100IFZ.fastq fastq (reads) 1.4 GB
ENCFF102MCG.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 56.1 MB
ENCFF118MTC.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 49.8 MB
ENCFF154TBF.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF167FNY.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 62.8 MB
ENCFF198HLU.bam bam (alignments); assembly: GRCh38; genome annotation: V29 2.3 GB
ENCFF220QSL.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 52.8 MB
ENCFF226RYE.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 49.2 MB
ENCFF230IAI.fastq fastq (reads) 1.6 GB
ENCFF235GUY.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 43.9 MB
ENCFF269UQP.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 54.1 MB
ENCFF279BIT.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 48.0 MB
ENCFF282YEK.bam bam (alignments); assembly: GRCh38; genome annotation: V24 2.7 GB
ENCFF288KZI.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 3.7 GB
ENCFF289SVN.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.2 MB
ENCFF295VCC.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 49.2 MB
ENCFF297PME.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF322DEU.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 56.5 MB
ENCFF347EXM.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 49.2 MB
ENCFF350FSY.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 48.9 MB
ENCFF366VEA.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 52.8 MB
ENCFF369LLY.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 56.4 MB
ENCFF418EZX.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 42.7 MB
ENCFF427BKX.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 46.7 MB
ENCFF440HPJ.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF468JBD.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF470GQC.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF471RIX.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 4.3 GB
ENCFF496YUA.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 45.9 MB
ENCFF509HDB.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 3.6 GB
ENCFF533DOG.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 53.8 MB
ENCFF549JNP.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 46.4 MB
ENCFF550QLM.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 61.8 MB
ENCFF550QYI.fastq fastq (reads) 1.6 GB
ENCFF552VOE.fastq fastq (reads) 1.4 GB
ENCFF553YAN.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 53.5 MB
ENCFF564PPK.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF590DAN.bam bam (alignments); assembly: GRCh38; genome annotation: V29 2.7 GB
ENCFF592QPE.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 3.2 GB
ENCFF594ZVR.bam bam (alignments); assembly: hg19; genome annotation: V19 2.2 GB
ENCFF597DDG.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 53.1 MB
ENCFF599WBV.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 45.6 MB
ENCFF602TBJ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 50.6 MB
ENCFF617TII.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 55.7 MB
ENCFF652YUK.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 55.1 MB
ENCFF661XEU.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF662XUE.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.2 MB
ENCFF671FMA.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 54.8 MB
ENCFF681UET.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 49.2 MB
ENCFF687ZKR.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF694ZMA.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 52.3 MB
ENCFF706ZTS.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 46.8 MB
ENCFF716UYP.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 3.1 GB
ENCFF718OLD.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF729LZA.bam bam (alignments); assembly: hg19; genome annotation: V19 1.8 GB
ENCFF749YWN.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 61.7 MB
ENCFF790DUO.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 48.5 MB
ENCFF798HOJ.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 62.7 MB
ENCFF811UHF.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 3.8 GB
ENCFF848CHR.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 53.0 MB
ENCFF849RWR.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 56.9 MB
ENCFF853UAP.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF856HUS.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 57.9 MB
ENCFF865NHP.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 56.6 MB
ENCFF867EOY.bam bam (alignments); assembly: GRCh38; genome annotation: V24 2.3 GB
ENCFF872YYA.bam bam (alignments); assembly: hg19; genome annotation: V19 2.1 GB
ENCFF876EFK.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF879PGY.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF884AVW.bam bam (alignments); assembly: hg19; genome annotation: V19 1.8 GB
ENCFF890TXB.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 62.1 MB
ENCFF901IVI.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 47.7 MB
ENCFF911JMW.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 52.2 MB
ENCFF941WYD.bam bam (alignments); assembly: GRCh38; genome annotation: V24 1.9 GB
ENCFF942OYD.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 53.6 MB
ENCFF944ZZS.bam bam (alignments); assembly: hg19; genome annotation: V19 2.1 GB
ENCFF960GZE.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 48.0 MB
ENCFF960VMS.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 53.7 MB
ENCFF983CAO.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 61.3 MB
ENCFF994IJV.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 48.0 MB
ENCFF997PRX.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 45.3 MB
ENCSR891DYO ENCSR · via encode_api

shRNA knockdown against PES1 in K562 cells followed by RNA-seq. (PES1_BGKLV19)

Homo sapiens

92 data files
FileTypeSize
ENCFF006VCA.bigWig bigWig (plus strand signal of unique reads) 66.8 MB
ENCFF020MBE.bigWig bigWig (plus strand signal of all reads) 70.2 MB
ENCFF031GXL.tsv tsv (gene quantifications) 9.1 MB
ENCFF033YGM.bigWig bigWig (plus strand signal of unique reads) 59.1 MB
ENCFF037GLZ.tar tar (differential splicing quantifications) 3.7 MB
ENCFF037SYQ.bigWig bigWig (plus strand signal of unique reads) 58.1 MB
ENCFF057VWH.bigWig bigWig (plus strand signal of all reads) 69.0 MB
ENCFF073HWE.tsv tsv (gene quantifications) 9.4 MB
ENCFF075RPI.bigWig bigWig (minus strand signal of unique reads) 60.4 MB
ENCFF083SZI.bigWig bigWig (minus strand signal of all reads) 70.6 MB
ENCFF099MEX.bigWig bigWig (minus strand signal of unique reads) 68.0 MB
ENCFF105OPN.bam bam (alignments) 2.8 GB
ENCFF110LIV.bam bam (alignments) 3.8 GB
ENCFF115PUE.bigWig bigWig (minus strand signal of all reads) 76.4 MB
ENCFF130CNV.bigWig bigWig (minus strand signal of all reads) 61.6 MB
ENCFF181LXV.bam bam (alignments) 3.3 GB
ENCFF196WCQ.tsv tsv (transcript quantifications) 27.3 MB
ENCFF211QHF.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF232XTO.tar tar (differential splicing quantifications) 3.3 MB
ENCFF238GEK.fastq fastq (reads) 1.7 GB
ENCFF243UHA.bigWig bigWig (plus strand signal of all reads) 71.9 MB
ENCFF259FCI.bigWig bigWig (minus strand signal of all reads) 69.3 MB
ENCFF279YOI.bigWig bigWig (minus strand signal of unique reads) 67.4 MB
ENCFF323CGE.bigWig bigWig (plus strand signal of unique reads) 65.9 MB
ENCFF332OSF.bigWig bigWig (minus strand signal of unique reads) 55.8 MB
ENCFF333QMK.bigWig bigWig (plus strand signal of all reads) 77.1 MB
ENCFF335OEB.tsv tsv (differential expression quantifications) 4.1 MB
ENCFF362EOX.tsv tsv (differential expression quantifications) 2.8 MB
ENCFF366NOJ.tsv tsv (gene quantifications) 10.4 MB
ENCFF375ZAB.bigWig bigWig (minus strand signal of unique reads) 57.7 MB
ENCFF388IXT.bigWig bigWig (plus strand signal of all reads) 77.4 MB
ENCFF395RNE.bigWig bigWig (plus strand signal of all reads) 68.3 MB
ENCFF417LRH.bigWig bigWig (plus strand signal of all reads) 68.4 MB
ENCFF436WJY.bigWig bigWig (plus strand signal of all reads) 63.0 MB
ENCFF439LKQ.bigWig bigWig (minus strand signal of all reads) 76.5 MB
ENCFF453FSQ.bam bam (transcriptome alignments) 4.2 GB
ENCFF457AKN.tsv tsv (differential expression quantifications) 5.5 MB
ENCFF489KYM.bigWig bigWig (minus strand signal of all reads) 67.5 MB
ENCFF493SGK.bigWig bigWig (plus strand signal of unique reads) 61.3 MB
ENCFF528DDX.bam bam (alignments) 3.4 GB
ENCFF529BTJ.bam bam (transcriptome alignments) 4.6 GB
ENCFF552ENY.bigWig bigWig (plus strand signal of all reads) 61.4 MB
ENCFF556UDE.bigWig bigWig (minus strand signal of unique reads) 59.9 MB
ENCFF562HWQ.bigWig bigWig (minus strand signal of unique reads) 62.4 MB
ENCFF562YBD.bigWig bigWig (plus strand signal of unique reads) 57.4 MB
ENCFF570BGV.bigWig bigWig (plus strand signal of unique reads) 61.7 MB
ENCFF579BLH.tsv tsv (transcript quantifications) 25.3 MB
ENCFF592GAM.bigWig bigWig (minus strand signal of unique reads) 56.9 MB
ENCFF604LDP.bigWig bigWig (minus strand signal of all reads) 67.4 MB
ENCFF605TCX.bigWig bigWig (minus strand signal of unique reads) 65.2 MB
ENCFF627NAL.bigWig bigWig (minus strand signal of all reads) 76.1 MB
ENCFF643FXI.bam bam (alignments) 3.1 GB
ENCFF646CJJ.bigWig bigWig (minus strand signal of unique reads) 64.6 MB
ENCFF660GUE.bigWig bigWig (minus strand signal of all reads) 61.9 MB
ENCFF665FCB.bigWig bigWig (minus strand signal of unique reads) 59.8 MB
ENCFF675YWH.bigWig bigWig (plus strand signal of all reads) 68.0 MB
ENCFF680KPW.bigWig bigWig (plus strand signal of unique reads) 64.2 MB
ENCFF683NWN.bigWig bigWig (minus strand signal of unique reads) 67.9 MB
ENCFF684HDS.tsv tsv (gene quantifications) 10.4 MB
ENCFF691WZS.bam bam (alignments) 2.8 GB
ENCFF692ZRB.tsv tsv (transcript quantifications) 27.3 MB
ENCFF698BLQ.fastq fastq (reads) 2.1 GB
ENCFF704EKA.tsv tsv (gene quantifications) 9.4 MB
ENCFF706PWE.bigWig bigWig (plus strand signal of unique reads) 69.5 MB
ENCFF744USG.bigWig bigWig (plus strand signal of all reads) 77.4 MB
ENCFF782OOZ.tsv tsv (transcript quantifications) 29.8 MB
ENCFF789VGM.bam bam (alignments) 3.4 GB
ENCFF791EFT.fastq fastq (reads) 1.8 GB
ENCFF810KPF.fastq fastq (reads) 2.0 GB
ENCFF835WCZ.bigWig bigWig (plus strand signal of unique reads) 69.0 MB
ENCFF836MXP.bigWig bigWig (minus strand signal of all reads) 67.6 MB
ENCFF841MHC.bigWig bigWig (plus strand signal of unique reads) 69.4 MB
ENCFF855XMW.bam bam (alignments) 3.7 GB
ENCFF869COL.bam bam (alignments) 2.8 GB
ENCFF885MGL.bigWig bigWig (plus strand signal of unique reads) 61.1 MB
ENCFF897KUE.bigWig bigWig (plus strand signal of all reads) 62.4 MB
ENCFF900GIV.bam bam (transcriptome alignments) 4.8 GB
ENCFF908ABT.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF908COU.tsv tsv (transcript quantifications) 24.9 MB
ENCFF915CJW.bam bam (transcriptome alignments) 5.2 GB
ENCFF924EPL.tar tar (differential splicing quantifications) 14.6 MB
ENCFF924UZY.tsv tsv (gene quantifications) 9.1 MB
ENCFF934PBD.bigWig bigWig (minus strand signal of all reads) 60.1 MB
ENCFF935DHT.bam bam (alignments) 3.1 GB
ENCFF949OZH.bam bam (alignments) 3.8 GB
ENCFF952RDN.tsv tsv (transcript quantifications) 29.8 MB
ENCFF957XWP.bigWig bigWig (minus strand signal of all reads) 67.1 MB
ENCFF969JDT.bam bam (transcriptome alignments) 4.6 GB
ENCFF978FIR.tsv tsv (transcript quantifications) 25.3 MB
ENCFF989IRX.bam bam (alignments) 3.1 GB
ENCFF997FMY.tsv tsv (transcript quantifications) 24.9 MB
ENCFF999PRS.bam bam (transcriptome alignments) 4.2 GB
ENCSR772DUM ENCSR · via encode_api

Control CRISPR gRNA against no target in K562 cells followed by RNA-seq. (NT-BGKcLV04-B)

Homo sapiens

84 data files
FileTypeSize
ENCFF020DSS.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 3.2 GB
ENCFF023AYY.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.3 MB
ENCFF026FIJ.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 66.8 MB
ENCFF027NZW.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 69.1 MB
ENCFF038WSF.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 58.4 MB
ENCFF080SGT.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF092SBO.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 66.1 MB
ENCFF119BHG.fastq fastq (reads) 1.4 GB
ENCFF144MZB.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 77.5 MB
ENCFF174SDV.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 68.6 MB
ENCFF175DQA.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF176ERF.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 62.0 MB
ENCFF178XRH.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 66.8 MB
ENCFF204PXL.bam bam (alignments); assembly: GRCh38; genome annotation: V29 2.4 GB
ENCFF213IYJ.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 77.5 MB
ENCFF214DWG.bam bam (alignments); assembly: hg19; genome annotation: V19 2.0 GB
ENCFF217KTE.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 2.7 GB
ENCFF224HIG.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 66.9 MB
ENCFF248JVO.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 62.7 MB
ENCFF254MMB.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 72.3 MB
ENCFF256AXE.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF267IRX.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF270FER.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 73.5 MB
ENCFF278NRU.bam bam (alignments); assembly: hg19; genome annotation: V19 1.9 GB
ENCFF279GLB.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 60.4 MB
ENCFF281OKV.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 64.5 MB
ENCFF295WLG.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 74.7 MB
ENCFF300SNB.bam bam (alignments); assembly: GRCh38; genome annotation: V29 2.5 GB
ENCFF301LJO.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 74.7 MB
ENCFF306FBK.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 75.1 MB
ENCFF322UBU.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 73.6 MB
ENCFF328VAO.bam bam (alignments); assembly: GRCh38; genome annotation: V24 2.4 GB
ENCFF333TBJ.fastq fastq (reads) 1.4 GB
ENCFF334BND.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 2.8 GB
ENCFF384GRP.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 68.7 MB
ENCFF401XHA.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 65.2 MB
ENCFF404SFJ.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 56.7 MB
ENCFF406WMA.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF408PSV.fastq fastq (reads) 1.4 GB
ENCFF413ARG.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 66.3 MB
ENCFF425VZU.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 66.0 MB
ENCFF433KMG.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF442IGA.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.3 MB
ENCFF451SQD.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 3.2 GB
ENCFF460BGK.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF462SUM.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 62.9 MB
ENCFF466LTA.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.8 MB
ENCFF477ZXB.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 65.1 MB
ENCFF486MHB.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 67.4 MB
ENCFF492YHR.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF494YJY.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 64.0 MB
ENCFF514VCY.bam bam (alignments); assembly: hg19; genome annotation: V19 1.9 GB
ENCFF519FFS.bam bam (alignments); assembly: hg19; genome annotation: V19 2.0 GB
ENCFF524BOO.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 63.9 MB
ENCFF525OOQ.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 70.7 MB
ENCFF533RBM.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 60.8 MB
ENCFF537AKL.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 65.2 MB
ENCFF558EGU.bam bam (alignments); assembly: GRCh38; genome annotation: V24 2.0 GB
ENCFF562GKD.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 73.5 MB
ENCFF584NDI.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 62.3 MB
ENCFF592KRC.bam bam (alignments); assembly: hg19; genome annotation: V19 2.4 GB
ENCFF621ILI.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 65.6 MB
ENCFF641PTK.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 61.3 MB
ENCFF681IYQ.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF681WGR.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 67.5 MB
ENCFF716VRD.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 63.1 MB
ENCFF728VUJ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 67.0 MB
ENCFF742CZE.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 76.1 MB
ENCFF743UDQ.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 64.5 MB
ENCFF752PXE.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 67.3 MB
ENCFF758VAG.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 2.7 GB
ENCFF761TJL.fastq fastq (reads) 1.4 GB
ENCFF769CWQ.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF785IJB.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 76.2 MB
ENCFF805UIZ.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 69.1 MB
ENCFF814BFK.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF825QCC.bam bam (alignments); assembly: GRCh38; genome annotation: V24 2.0 GB
ENCFF856JBX.bam bam (alignments); assembly: hg19; genome annotation: V19 2.4 GB
ENCFF863PQP.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 58.5 MB
ENCFF864TFN.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 76.5 MB
ENCFF877JFK.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 61.3 MB
ENCFF896QFX.bam bam (alignments); assembly: GRCh38; genome annotation: V24 2.5 GB
ENCFF980BTR.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 68.6 MB
ENCFF991SGH.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 2.8 GB
ENCSR762FEO ENCSR · via encode_api

RNA-seq on K562 cells treated with an shRNA knockdown against LSM11. (LSM11_BGKLV21)

Homo sapiens

92 data files
FileTypeSize
ENCFF014AWU.bam bam (alignments) 2.4 GB
ENCFF020UBK.tsv tsv (transcript quantifications) 29.8 MB
ENCFF026HTB.bigWig bigWig (plus strand signal of all reads) 62.6 MB
ENCFF040RVA.bam bam (alignments) 2.8 GB
ENCFF042JZX.bigWig bigWig (minus strand signal of all reads) 81.2 MB
ENCFF052WZW.bigWig bigWig (minus strand signal of unique reads) 51.4 MB
ENCFF063FRU.bigWig bigWig (minus strand signal of all reads) 69.9 MB
ENCFF071BYX.bigWig bigWig (minus strand signal of unique reads) 68.0 MB
ENCFF103VLF.bigWig bigWig (minus strand signal of unique reads) 67.2 MB
ENCFF103YYR.bigWig bigWig (minus strand signal of all reads) 62.2 MB
ENCFF112DYQ.bigWig bigWig (minus strand signal of unique reads) 71.7 MB
ENCFF116FPB.bigWig bigWig (plus strand signal of all reads) 82.3 MB
ENCFF125PWT.tsv tsv (gene quantifications) 9.4 MB
ENCFF133JOD.bam bam (transcriptome alignments) 3.3 GB
ENCFF136JWY.tar tar (differential splicing quantifications) 14.4 MB
ENCFF174BGM.bigWig bigWig (plus strand signal of unique reads) 69.8 MB
ENCFF182FVU.bigWig bigWig (minus strand signal of unique reads) 64.1 MB
ENCFF198LED.bigWig bigWig (minus strand signal of unique reads) 54.9 MB
ENCFF200DJS.bam bam (alignments) 2.8 GB
ENCFF202WDR.tsv tsv (differential expression quantifications) 2.7 MB
ENCFF203TOT.bigWig bigWig (plus strand signal of all reads) 75.2 MB
ENCFF217NHJ.bam bam (alignments) 4.3 GB
ENCFF228QXR.bigWig bigWig (plus strand signal of unique reads) 73.0 MB
ENCFF233YFQ.bam bam (alignments) 4.4 GB
ENCFF235NGP.bigWig bigWig (minus strand signal of all reads) 73.9 MB
ENCFF238DZZ.bam bam (alignments) 2.4 GB
ENCFF258KSR.tar tar (differential splicing quantifications) 3.1 MB
ENCFF281VIC.fastq fastq (reads) 1.6 GB
ENCFF293HDM.bigWig bigWig (plus strand signal of all reads) 57.6 MB
ENCFF305ZIP.bigWig bigWig (plus strand signal of unique reads) 73.4 MB
ENCFF340OJH.bigWig bigWig (plus strand signal of all reads) 63.0 MB
ENCFF353JZX.bigWig bigWig (minus strand signal of all reads) 79.7 MB
ENCFF356FGY.fastq fastq (reads) 2.5 GB
ENCFF359QJI.tsv tsv (differential expression quantifications) 5.5 MB
ENCFF369PRJ.fastq fastq (reads) 2.3 GB
ENCFF378SOA.bigWig bigWig (minus strand signal of all reads) 56.5 MB
ENCFF396UMA.bigWig bigWig (minus strand signal of all reads) 55.7 MB
ENCFF397TAX.bigWig bigWig (plus strand signal of unique reads) 52.8 MB
ENCFF415ODV.tsv tsv (transcript quantifications) 27.3 MB
ENCFF417JEV.bam bam (transcriptome alignments) 3.3 GB
ENCFF446ZWW.bigWig bigWig (minus strand signal of all reads) 61.9 MB
ENCFF456BPF.tsv tsv (differential expression quantifications) 1.8 MB
ENCFF463BKD.bigWig bigWig (plus strand signal of unique reads) 65.9 MB
ENCFF471TUM.tsv tsv (gene quantifications) 9.5 MB
ENCFF480BJU.bigWig bigWig (minus strand signal of unique reads) 54.3 MB
ENCFF483ITW.fastq fastq (reads) 1.4 GB
ENCFF484HXL.tsv tsv (gene quantifications) 10.4 MB
ENCFF492OZV.bam bam (alignments) 3.7 GB
ENCFF512QTC.bigWig bigWig (plus strand signal of unique reads) 73.4 MB
ENCFF537HNS.bam bam (alignments) 4.4 GB
ENCFF537ZJK.bigWig bigWig (minus strand signal of all reads) 81.2 MB
ENCFF540XUS.bigWig bigWig (minus strand signal of unique reads) 71.1 MB
ENCFF544VMM.bigWig bigWig (plus strand signal of unique reads) 68.7 MB
ENCFF579JAS.bigWig bigWig (plus strand signal of unique reads) 56.2 MB
ENCFF584LHR.bigWig bigWig (minus strand signal of all reads) 61.3 MB
ENCFF598AYD.bigWig bigWig (plus strand signal of all reads) 80.9 MB
ENCFF604JQZ.tar tar (differential splicing quantifications) 3.6 MB
ENCFF608UXJ.tsv tsv (transcript quantifications) 25.3 MB
ENCFF611HGV.bam bam (alignments) 2.8 GB
ENCFF612WZA.tsv tsv (transcript quantifications) 24.9 MB
ENCFF619HRR.bigWig bigWig (plus strand signal of all reads) 82.3 MB
ENCFF645XUY.bigWig bigWig (plus strand signal of unique reads) 55.6 MB
ENCFF669TIE.bigWig bigWig (plus strand signal of all reads) 62.2 MB
ENCFF700VPB.bigWig bigWig (minus strand signal of all reads) 72.6 MB
ENCFF716MQK.tsv tsv (gene quantifications) 9.1 MB
ENCFF721LUR.tsv tsv (transcript quantifications) 25.3 MB
ENCFF732EUQ.tsv tsv (gene quantifications) 9.1 MB
ENCFF736YND.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF746IPD.bigWig bigWig (plus strand signal of all reads) 54.2 MB
ENCFF749GHP.bam bam (alignments) 2.4 GB
ENCFF749JPP.bigWig bigWig (minus strand signal of all reads) 53.1 MB
ENCFF764OZF.tsv tsv (transcript quantifications) 24.9 MB
ENCFF768DRJ.bigWig bigWig (minus strand signal of unique reads) 71.7 MB
ENCFF793ONR.bigWig bigWig (plus strand signal of unique reads) 52.9 MB
ENCFF820PGR.bigWig bigWig (plus strand signal of all reads) 71.2 MB
ENCFF829EGO.bam bam (transcriptome alignments) 5.2 GB
ENCFF840HVR.bam bam (transcriptome alignments) 5.8 GB
ENCFF853VIC.bigWig bigWig (minus strand signal of unique reads) 48.9 MB
ENCFF858LCJ.bam bam (alignments) 3.7 GB
ENCFF881TTA.bigWig bigWig (minus strand signal of unique reads) 54.7 MB
ENCFF889KSN.tsv tsv (differential expression quantifications) 4.1 MB
ENCFF896AXG.tsv tsv (transcript quantifications) 29.8 MB
ENCFF912QQJ.bam bam (transcriptome alignments) 5.2 GB
ENCFF914WKB.bigWig bigWig (plus strand signal of unique reads) 56.2 MB
ENCFF916HDX.bam bam (alignments) 3.7 GB
ENCFF917ZDZ.tsv tsv (transcript quantifications) 27.2 MB
ENCFF930EHO.tsv tsv (gene quantifications) 10.4 MB
ENCFF939FNN.bam bam (transcriptome alignments) 3.7 GB
ENCFF942QCF.bigWig bigWig (plus strand signal of all reads) 56.5 MB
ENCFF956NZR.bigWig bigWig (plus strand signal of unique reads) 50.3 MB
ENCFF958VFA.bigWig bigWig (minus strand signal of unique reads) 51.8 MB
ENCFF980DSA.bigWig bigWig (plus strand signal of all reads) 73.6 MB
ENCSR898OPN ENCSR · via encode_api

RNA-seq on K562 cells treated with an shRNA knockdown against RBM17. (RBM17_BGKLV29-B)

Homo sapiens

92 data files
FileTypeSize
ENCFF030KGS.bigWig bigWig (minus strand signal of all reads) 124.6 MB
ENCFF039KEN.bigWig bigWig (plus strand signal of unique reads) 119.0 MB
ENCFF052OUH.bigWig bigWig (plus strand signal of unique reads) 124.1 MB
ENCFF055TWI.fastq fastq (reads) 4.3 GB
ENCFF068XKL.bigWig bigWig (plus strand signal of unique reads) 107.4 MB
ENCFF075GCM.bigWig bigWig (minus strand signal of all reads) 128.7 MB
ENCFF081NDK.bigWig bigWig (minus strand signal of unique reads) 122.5 MB
ENCFF091ZYH.bigWig bigWig (minus strand signal of all reads) 140.0 MB
ENCFF106TDK.tsv tsv (transcript quantifications) 29.9 MB
ENCFF114KSH.bigWig bigWig (plus strand signal of unique reads) 124.8 MB
ENCFF123YND.bigWig bigWig (plus strand signal of all reads) 139.3 MB
ENCFF131IHT.bigWig bigWig (minus strand signal of unique reads) 113.7 MB
ENCFF131WBV.bigWig bigWig (minus strand signal of unique reads) 121.6 MB
ENCFF132UJQ.bigWig bigWig (minus strand signal of unique reads) 105.1 MB
ENCFF148PZK.tsv tsv (gene quantifications) 10.4 MB
ENCFF153AAE.bigWig bigWig (plus strand signal of all reads) 129.5 MB
ENCFF166NKM.tsv tsv (transcript quantifications) 27.5 MB
ENCFF177VPA.bam bam (transcriptome alignments) 9.8 GB
ENCFF186LAV.tsv tsv (gene quantifications) 10.4 MB
ENCFF200FGP.bam bam (transcriptome alignments) 9.9 GB
ENCFF210UBG.bigWig bigWig (minus strand signal of all reads) 124.8 MB
ENCFF211CCE.tsv tsv (differential expression quantifications) 2.8 MB
ENCFF211NUC.tsv tsv (differential expression quantifications) 1.8 MB
ENCFF217AHD.bigWig bigWig (minus strand signal of all reads) 128.7 MB
ENCFF217ERF.bam bam (alignments) 7.7 GB
ENCFF225ZFL.bam bam (alignments) 5.6 GB
ENCFF239CVU.bigWig bigWig (plus strand signal of all reads) 129.7 MB
ENCFF247PTJ.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF251WHW.bigWig bigWig (plus strand signal of all reads) 127.5 MB
ENCFF257LEK.fastq fastq (reads) 4.0 GB
ENCFF268LAZ.fastq fastq (reads) 4.3 GB
ENCFF270YWC.bigWig bigWig (plus strand signal of unique reads) 116.4 MB
ENCFF274EQS.bam bam (alignments) 7.1 GB
ENCFF279NXJ.bam bam (alignments) 6.9 GB
ENCFF281QDY.bigWig bigWig (plus strand signal of all reads) 118.2 MB
ENCFF292SQV.tsv tsv (gene quantifications) 9.1 MB
ENCFF301BQU.bam bam (transcriptome alignments) 9.2 GB
ENCFF302CQI.tsv tsv (transcript quantifications) 25.4 MB
ENCFF309VAA.bigWig bigWig (minus strand signal of unique reads) 107.6 MB
ENCFF355OVE.tsv tsv (transcript quantifications) 29.9 MB
ENCFF373OEN.bam bam (alignments) 6.0 GB
ENCFF381AUN.bigWig bigWig (plus strand signal of unique reads) 115.6 MB
ENCFF397GZT.bigWig bigWig (minus strand signal of unique reads) 116.5 MB
ENCFF409BFZ.tar tar (differential splicing quantifications) 5.1 MB
ENCFF439JWL.bigWig bigWig (plus strand signal of unique reads) 118.0 MB
ENCFF442VMQ.bigWig bigWig (plus strand signal of all reads) 141.1 MB
ENCFF448NVS.bigWig bigWig (minus strand signal of unique reads) 105.9 MB
ENCFF450AUP.bam bam (transcriptome alignments) 11.4 GB
ENCFF458HXR.bigWig bigWig (minus strand signal of all reads) 126.5 MB
ENCFF481IBD.bam bam (transcriptome alignments) 9.1 GB
ENCFF515BNO.bigWig bigWig (minus strand signal of all reads) 114.9 MB
ENCFF519GBS.bam bam (transcriptome alignments) 10.5 GB
ENCFF519WKI.tsv tsv (transcript quantifications) 27.5 MB
ENCFF523UMX.bigWig bigWig (minus strand signal of all reads) 116.7 MB
ENCFF564RGD.bam bam (alignments) 7.7 GB
ENCFF567ICO.bam bam (alignments) 7.1 GB
ENCFF571MJH.tsv tsv (gene quantifications) 9.5 MB
ENCFF588PSW.bigWig bigWig (minus strand signal of unique reads) 116.0 MB
ENCFF595ANQ.tsv tsv (differential expression quantifications) 4.3 MB
ENCFF609MTI.bigWig bigWig (minus strand signal of unique reads) 113.8 MB
ENCFF615LPI.tsv tsv (gene quantifications) 9.5 MB
ENCFF637OBD.bigWig bigWig (minus strand signal of all reads) 115.2 MB
ENCFF639JQB.bigWig bigWig (plus strand signal of all reads) 141.0 MB
ENCFF639THW.tar tar (differential splicing quantifications) 6.1 MB
ENCFF652KOK.bam bam (alignments) 5.6 GB
ENCFF666NAH.bam bam (alignments) 6.0 GB
ENCFF672EBK.bigWig bigWig (plus strand signal of unique reads) 125.4 MB
ENCFF679EQA.bigWig bigWig (plus strand signal of all reads) 115.8 MB
ENCFF682YDP.bigWig bigWig (minus strand signal of all reads) 138.1 MB
ENCFF697WVX.bigWig bigWig (plus strand signal of unique reads) 107.7 MB
ENCFF707KVY.tar tar (differential splicing quantifications) 17.2 MB
ENCFF709PKD.bigWig bigWig (plus strand signal of all reads) 125.7 MB
ENCFF718UVA.bigWig bigWig (plus strand signal of all reads) 116.8 MB
ENCFF731PVH.bigWig bigWig (minus strand signal of unique reads) 113.6 MB
ENCFF746IWC.tsv tsv (transcript quantifications) 24.9 MB
ENCFF756FAD.bigWig bigWig (plus strand signal of unique reads) 109.8 MB
ENCFF762INP.tsv tsv (transcript quantifications) 24.9 MB
ENCFF770HXJ.bigWig bigWig (plus strand signal of unique reads) 115.7 MB
ENCFF816VBY.bigWig bigWig (minus strand signal of unique reads) 113.4 MB
ENCFF826PMY.tsv tsv (gene quantifications) 9.1 MB
ENCFF838NWT.bam bam (alignments) 5.6 GB
ENCFF846CSF.bigWig bigWig (minus strand signal of all reads) 127.6 MB
ENCFF879QFI.bigWig bigWig (plus strand signal of all reads) 126.7 MB
ENCFF888BGQ.bam bam (alignments) 7.5 GB
ENCFF910NVK.bigWig bigWig (plus strand signal of all reads) 129.7 MB
ENCFF925UUS.bigWig bigWig (minus strand signal of unique reads) 123.2 MB
ENCFF947AGV.fastq fastq (reads) 4.0 GB
ENCFF971SOW.tsv tsv (transcript quantifications) 25.4 MB
ENCFF972NFF.bigWig bigWig (minus strand signal of all reads) 139.9 MB
ENCFF973HZQ.bam bam (alignments) 6.1 GB
ENCFF976VGG.tsv tsv (differential expression quantifications) 2.0 MB
ENCFF995JNY.bigWig bigWig (plus strand signal of unique reads) 115.8 MB
ENCSR689ZJC ENCSR · via encode_api

RNA-seq on HepG2 cells treated with an shRNA knockdown against HNRNPUL1. (HNRNPUL1_BGHLV26)

Homo sapiens

92 data files
FileTypeSize
ENCFF002GJB.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 70.8 MB
ENCFF015XJP.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF026BAS.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 60.7 MB
ENCFF030ESY.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 60.4 MB
ENCFF032VBE.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 72.9 MB
ENCFF054ZKK.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.9 MB
ENCFF058DJO.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 65.0 MB
ENCFF084SQM.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.2 MB
ENCFF099URA.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.2 MB
ENCFF107JUB.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 70.0 MB
ENCFF109TUB.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 61.5 MB
ENCFF111GYM.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 66.0 MB
ENCFF111UHX.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 25.0 MB
ENCFF134YSM.bam bam (alignments); assembly: hg19; genome annotation: V19 5.0 GB
ENCFF164IAB.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 70.7 MB
ENCFF204XJZ.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.4 MB
ENCFF205EXD.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 66.5 MB
ENCFF213XHZ.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 5.7 GB
ENCFF221SYO.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 66.9 MB
ENCFF223KQV.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 7.5 GB
ENCFF224HGK.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 4.0 MB
ENCFF224RNR.bam bam (alignments); assembly: GRCh38; genome annotation: V24 5.1 GB
ENCFF256ODI.fastq fastq (reads) 3.1 GB
ENCFF261JQU.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 62.1 MB
ENCFF271JTY.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 66.7 MB
ENCFF279PIN.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 3.2 MB
ENCFF289SIK.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.9 MB
ENCFF293KUA.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.2 GB
ENCFF310LQC.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 6.6 GB
ENCFF314GBC.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 78.6 MB
ENCFF314ZLB.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 71.2 MB
ENCFF326IEC.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 65.2 MB
ENCFF327IJV.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 68.8 MB
ENCFF342BOV.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.8 MB
ENCFF365ZZL.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 68.9 MB
ENCFF367IZD.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 73.6 MB
ENCFF374MKP.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.5 MB
ENCFF382GHF.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 70.7 MB
ENCFF386PUA.fastq fastq (reads) 2.6 GB
ENCFF421VUG.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 66.2 MB
ENCFF426OHG.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.5 MB
ENCFF432DCL.bam bam (alignments); assembly: GRCh38; genome annotation: V29 5.1 GB
ENCFF437JWB.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 68.9 MB
ENCFF439QFB.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 6.5 GB
ENCFF441FRE.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 2.8 MB
ENCFF467JUA.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 66.7 MB
ENCFF468MLK.bam bam (alignments); assembly: hg19; genome annotation: V19 4.2 GB
ENCFF480MTO.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 5.7 GB
ENCFF480NSD.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 78.6 MB
ENCFF483PBW.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 65.2 MB
ENCFF494HYV.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF523KMB.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 78.0 MB
ENCFF532LEQ.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 65.1 MB
ENCFF560RIT.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF574KTK.bam bam (alignments); assembly: hg19; genome annotation: V19 4.2 GB
ENCFF578NYR.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.4 MB
ENCFF579IJT.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 25.0 MB
ENCFF596UTY.bam bam (alignments); assembly: hg19; genome annotation: V19 4.3 GB
ENCFF613RKE.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 64.4 MB
ENCFF630IRT.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 63.3 MB
ENCFF632BDV.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.9 MB
ENCFF650NVD.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 66.9 MB
ENCFF657ELZ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 63.1 MB
ENCFF699TPW.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 61.6 MB
ENCFF707PPC.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 72.9 MB
ENCFF710SMT.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 66.9 MB
ENCFF721EPM.bam bam (alignments); assembly: hg19; genome annotation: V19 3.6 GB
ENCFF726YMP.bam bam (alignments); assembly: hg19; genome annotation: V19 3.6 GB
ENCFF740VNU.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 5.7 MB
ENCFF758UOK.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 74.3 MB
ENCFF784KKY.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 76.8 MB
ENCFF796JTG.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 58.8 MB
ENCFF809XCT.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 68.0 MB
ENCFF821FSC.bam bam (alignments); assembly: GRCh38; genome annotation: V29 4.4 GB
ENCFF821OXZ.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.8 MB
ENCFF870ATW.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 77.2 MB
ENCFF872RJV.fastq fastq (reads) 2.6 GB
ENCFF876FXL.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.4 GB
ENCFF877ENO.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 72.5 MB
ENCFF885FVC.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 77.2 MB
ENCFF903QQR.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 65.2 MB
ENCFF907CDK.fastq fastq (reads) 3.1 GB
ENCFF909QWV.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 68.1 MB
ENCFF912PPS.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF917URC.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 69.9 MB
ENCFF919DRQ.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 68.9 MB
ENCFF924ODB.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 6.6 GB
ENCFF935JSP.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 64.0 MB
ENCFF938LTX.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 64.8 MB
ENCFF941SDK.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.6 GB
ENCFF949KEW.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 14.5 MB
ENCFF957SRN.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 74.3 MB
ENCSR915BDY ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) pulldown experiment against KHSRP

15 data files
FileTypeSize
ENCFF356DWW.tsv tsv (enrichment) 168.0 KB
ENCFF385FOT.fastq fastq (reads) 541.3 MB
ENCFF402TCU.tsv tsv (library fraction) 63.9 KB
ENCFF464UVC.bed bed (peaks); assembly: hg19 408.1 KB
ENCFF487JGC.fastq fastq (reads) 451.3 MB
ENCFF608BCN.fastq fastq (reads) 619.0 MB
ENCFF641RTT.fastq fastq (reads) 514.0 MB
ENCFF708KEI.tsv tsv (library fraction) 265.2 KB
ENCFF712ZAK.bed bed (peaks); assembly: hg19 1.8 MB
ENCFF739ZKH.tsv tsv (library fraction) 1.1 MB
ENCFF757NUT.tsv tsv (enrichment) 688.0 KB
ENCFF778ABV.fastq fastq (reads) 835.8 MB
ENCFF865YVO.tsv tsv (enrichment) 41.0 KB
ENCFF924TSO.tsv tsv (enrichment) 10.0 KB
ENCFF931GAS.tsv tsv (library fraction) 15.2 KB
ENCSR829EFL ENCSR · via encode_api

RNA-seq on K562 cells treated with an shRNA knockdown against NSUN2. (NSUN2_BGKLV34)

Homo sapiens

78 data files
FileTypeSize
ENCFF002XPO.bam bam (transcriptome alignments) 8.7 GB
ENCFF006NPB.bigWig bigWig (plus strand signal of all reads) 116.8 MB
ENCFF027LYZ.bigWig bigWig (minus strand signal of all reads) 108.1 MB
ENCFF038VMX.bam bam (transcriptome alignments) 7.8 GB
ENCFF052ALM.tsv tsv (transcript quantifications) 24.9 MB
ENCFF075ABI.bam bam (transcriptome alignments) 7.6 GB
ENCFF113FZY.bam bam (alignments) 6.3 GB
ENCFF117YLD.bigWig bigWig (minus strand signal of unique reads) 100.0 MB
ENCFF123TKQ.fastq fastq (reads) 3.2 GB
ENCFF126XJC.bigWig bigWig (minus strand signal of unique reads) 95.4 MB
ENCFF132DXH.bam bam (alignments) 5.6 GB
ENCFF132XCX.bigWig bigWig (minus strand signal of unique reads) 95.9 MB
ENCFF174PIO.bigWig bigWig (minus strand signal of unique reads) 102.4 MB
ENCFF191YTI.bam bam (alignments) 7.1 GB
ENCFF199PHJ.bigWig bigWig (plus strand signal of all reads) 102.1 MB
ENCFF203KYU.tsv tsv (transcript quantifications) 27.5 MB
ENCFF206WPX.bam bam (alignments) 6.8 GB
ENCFF211UUQ.tar tar (differential splicing quantifications) 5.2 MB
ENCFF224QUG.bigWig bigWig (minus strand signal of all reads) 104.4 MB
ENCFF229TGT.bigWig bigWig (minus strand signal of unique reads) 93.7 MB
ENCFF247VHK.bam bam (alignments) 4.9 GB
ENCFF259RVZ.tsv tsv (transcript quantifications) 24.9 MB
ENCFF274QNF.bigWig bigWig (plus strand signal of unique reads) 104.8 MB
ENCFF282RIS.tsv tsv (gene quantifications) 9.1 MB
ENCFF336KIU.bigWig bigWig (minus strand signal of all reads) 99.2 MB
ENCFF339NKH.bam bam (alignments) 4.9 GB
ENCFF339OMA.tsv tsv (transcript quantifications) 29.8 MB
ENCFF343LPG.bigWig bigWig (plus strand signal of all reads) 101.0 MB
ENCFF381FMB.bigWig bigWig (minus strand signal of all reads) 102.9 MB
ENCFF383HXK.bigWig bigWig (minus strand signal of all reads) 124.8 MB
ENCFF394KHH.tsv tsv (gene quantifications) 10.4 MB
ENCFF395WVZ.fastq fastq (reads) 3.8 GB
ENCFF407LRS.fastq fastq (reads) 3.4 GB
ENCFF425BHP.bam bam (alignments) 5.8 GB
ENCFF428TXN.tsv tsv (differential expression quantifications) 3.0 MB
ENCFF436JQM.bigWig bigWig (plus strand signal of unique reads) 101.9 MB
ENCFF439RQZ.tsv tsv (gene quantifications) 10.4 MB
ENCFF489ZLA.tsv tsv (gene quantifications) 9.1 MB
ENCFF507BLD.bam bam (alignments) 7.1 GB
ENCFF529UTU.bigWig bigWig (minus strand signal of all reads) 122.9 MB
ENCFF536VLX.bigWig bigWig (minus strand signal of unique reads) 90.5 MB
ENCFF546OGN.bigWig bigWig (plus strand signal of all reads) 109.3 MB
ENCFF548WTO.fastq fastq (reads) 3.7 GB
ENCFF564ZLK.bigWig bigWig (minus strand signal of unique reads) 102.4 MB
ENCFF564ZZU.tsv tsv (differential expression quantifications) 2.0 MB
ENCFF601SBO.tar tar (differential splicing quantifications) 16.8 MB
ENCFF622LZO.bigWig bigWig (minus strand signal of unique reads) 108.7 MB
ENCFF625ZDC.bigWig bigWig (plus strand signal of unique reads) 95.5 MB
ENCFF637NTQ.tsv tsv (transcript quantifications) 29.9 MB
ENCFF661MYH.bigWig bigWig (minus strand signal of all reads) 116.6 MB
ENCFF678LZA.bam bam (alignments) 6.0 GB
ENCFF692LMZ.bigWig bigWig (plus strand signal of all reads) 106.2 MB
ENCFF715NRK.bam bam (transcriptome alignments) 6.8 GB
ENCFF716YQD.bigWig bigWig (plus strand signal of unique reads) 97.7 MB
ENCFF717ZVU.bigWig bigWig (plus strand signal of unique reads) 111.3 MB
ENCFF722CHQ.bigWig bigWig (plus strand signal of all reads) 117.8 MB
ENCFF739KWL.tsv tsv (differential expression quantifications) 4.5 MB
ENCFF745RHF.bigWig bigWig (plus strand signal of all reads) 124.3 MB
ENCFF774IAV.bam bam (transcriptome alignments) 7.7 GB
ENCFF798JNU.bam bam (alignments) 5.6 GB
ENCFF798VSV.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF810KZK.tar tar (differential splicing quantifications) 4.3 MB
ENCFF819LSW.bigWig bigWig (plus strand signal of unique reads) 92.9 MB
ENCFF820HEL.tsv tsv (transcript quantifications) 27.5 MB
ENCFF831MFH.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF846BBS.bigWig bigWig (plus strand signal of unique reads) 104.5 MB
ENCFF850GLY.bigWig bigWig (plus strand signal of all reads) 112.1 MB
ENCFF870WPH.bigWig bigWig (minus strand signal of all reads) 101.1 MB
ENCFF877USM.bigWig bigWig (plus strand signal of all reads) 126.2 MB
ENCFF886ARG.bigWig bigWig (minus strand signal of all reads) 110.2 MB
ENCFF887NTD.bigWig bigWig (plus strand signal of unique reads) 98.4 MB
ENCFF912ZJM.bigWig bigWig (plus strand signal of unique reads) 111.3 MB
ENCFF920ODF.bigWig bigWig (minus strand signal of unique reads) 108.9 MB
ENCFF920RGS.bam bam (alignments) 5.1 GB
ENCFF942ALK.bigWig bigWig (plus strand signal of unique reads) 102.0 MB
ENCFF948KUM.bigWig bigWig (minus strand signal of all reads) 115.5 MB
ENCFF976MOG.bigWig bigWig (minus strand signal of unique reads) 99.5 MB
ENCFF981GAS.bigWig bigWig (plus strand signal of all reads) 104.6 MB
ENCSR570WLM ENCSR · via encode_api

eCLIP experiment on HepG2 against QKI

Homo sapiens

36 data files
FileTypeSize
ENCFF074DRB.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 25.5 MB
ENCFF081ZJS.bam bam (alignments); assembly: hg19 346.6 MB
ENCFF179YDO.bam bam (alignments); assembly: hg19 576.7 MB
ENCFF180SZL.fastq fastq (reads) 1.1 GB
ENCFF183VLS.bigBed bigBed (peaks); assembly: hg19 5.4 MB
ENCFF236FAE.bigBed bigBed (peaks); assembly: hg19 2.7 MB
ENCFF299VTZ.bed bed (peaks); assembly: GRCh38 279.3 KB
ENCFF420RBU.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 18.0 MB
ENCFF444DES.fastq fastq (reads) 1019.9 MB
ENCFF445CGF.bed bed (peaks); assembly: hg19 221.5 KB
ENCFF452EOC.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 17.6 MB
ENCFF454GLW.bed bed (peaks); assembly: hg19 720.3 KB
ENCFF459ANM.bed bed (peaks); assembly: hg19 2.8 MB
ENCFF480VGI.bigBed bigBed (peaks); assembly: hg19 1.3 MB
ENCFF525PZA.bed bed (peaks); assembly: hg19 2.1 MB
ENCFF540VOG.fastq fastq (reads) 1.0 GB
ENCFF542XZB.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 18.9 MB
ENCFF544QKV.bed bed (peaks); assembly: hg19 680.8 KB
ENCFF551IJQ.bed bed (peaks); assembly: GRCh38 2.8 MB
ENCFF567ADV.bam bam (alignments); assembly: GRCh38 555.1 MB
ENCFF594IKL.bigBed bigBed (peaks); assembly: GRCh38 3.3 MB
ENCFF683OAO.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 18.4 MB
ENCFF704OCI.bed bed (peaks); assembly: GRCh38 213.9 KB
ENCFF714ZTU.bed bed (peaks); assembly: GRCh38 260.3 KB
ENCFF723OPP.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 26.6 MB
ENCFF746GSO.fastq fastq (reads) 1.1 GB
ENCFF810CHK.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 26.0 MB
ENCFF815XNW.bed bed (peaks); assembly: GRCh38 2.0 MB
ENCFF834HHP.bigBed bigBed (peaks); assembly: GRCh38 513.5 KB
ENCFF860YHG.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 25.4 MB
ENCFF862YVK.bam bam (alignments); assembly: GRCh38 323.2 MB
ENCFF870PAN.bigBed bigBed (peaks); assembly: hg19 3.0 MB
ENCFF887ZND.bigBed bigBed (peaks); assembly: hg19 3.4 MB
ENCFF941YPK.bigBed bigBed (peaks); assembly: GRCh38 636.4 KB
ENCFF984WOV.bigBed bigBed (peaks); assembly: GRCh38 5.3 MB
ENCFF998ASJ.bigBed bigBed (peaks); assembly: hg19 1.3 MB
ENCSR588GYZ ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) pulldown experiment against IGF2BP2

12 data files
FileTypeSize
ENCFF074RIC.fastq fastq (reads) 642.4 MB
ENCFF262EYJ.tsv tsv (library fraction) 1.2 MB
ENCFF331ENP.fastq fastq (reads) 336.8 MB
ENCFF359JRV.tsv tsv (enrichment) 196.0 KB
ENCFF446BRC.tsv tsv (enrichment) 48.0 KB
ENCFF551GUG.tsv tsv (library fraction) 312.7 KB
ENCFF556SJQ.bed bed (peaks) 241.4 KB
ENCFF703PSX.tsv tsv (library fraction) 75.7 KB
ENCFF758QOA.fastq fastq (reads) 345.9 MB
ENCFF833VXY.fastq fastq (reads) 338.0 MB
ENCFF841MFA.tsv tsv (enrichment) 800.0 KB
ENCFF998ZLV.fastq fastq (reads) 335.8 MB
ENCSR300QFQ ENCSR · via encode_api

RNA-seq on K562 cells treated with an shRNA knockdown against TRIM56. (TRIM56_BGKLV21)

Homo sapiens

92 data files
FileTypeSize
ENCFF003UJH.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 65.1 MB
ENCFF005OYT.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 80.9 MB
ENCFF006DPZ.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.9 MB
ENCFF013IJB.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 75.1 MB
ENCFF017ZSS.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 71.5 MB
ENCFF047QSY.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 65.1 MB
ENCFF049VAO.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF064UYB.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 72.2 MB
ENCFF068ERK.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF078BXG.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.8 GB
ENCFF079LOC.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 5.6 MB
ENCFF083OXA.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF092UHX.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 82.4 MB
ENCFF099ZDX.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 4.3 MB
ENCFF123DTH.bam bam (alignments); assembly: GRCh38; genome annotation: V29 3.4 GB
ENCFF126SBS.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 71.6 MB
ENCFF142NGK.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 70.0 MB
ENCFF153XAH.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 60.1 MB
ENCFF177DBS.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 61.8 MB
ENCFF182JXJ.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.6 GB
ENCFF203MAR.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF215FPD.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 3.9 GB
ENCFF220FVT.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 71.8 MB
ENCFF244PSC.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 72.5 MB
ENCFF247IET.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF249MDX.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.7 MB
ENCFF253YNM.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 73.7 MB
ENCFF265TMC.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 70.4 MB
ENCFF295HQX.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 3.8 GB
ENCFF367ZCC.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 64.7 MB
ENCFF380TBW.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 65.3 MB
ENCFF384IZJ.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 60.0 MB
ENCFF409ROU.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.3 MB
ENCFF417GAB.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 64.3 MB
ENCFF444NNT.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF448OEG.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 68.2 MB
ENCFF463OAJ.bam bam (alignments); assembly: hg19; genome annotation: V19 3.8 GB
ENCFF488VXR.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.9 MB
ENCFF497NZC.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 57.4 MB
ENCFF513ZNX.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 59.9 MB
ENCFF516VZK.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 81.3 MB
ENCFF520UIY.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 81.3 MB
ENCFF526EKZ.bam bam (alignments); assembly: hg19; genome annotation: V19 3.3 GB
ENCFF530KMZ.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 4.3 GB
ENCFF530WWM.bam bam (alignments); assembly: hg19; genome annotation: V19 2.8 GB
ENCFF546RNB.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 63.3 MB
ENCFF549CVO.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 3.8 MB
ENCFF561BHJ.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF567UPH.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 71.9 MB
ENCFF574DNX.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 61.2 MB
ENCFF575WLT.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.3 MB
ENCFF593KCE.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 5.3 GB
ENCFF595VCS.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF602PJC.bam bam (alignments); assembly: GRCh38; genome annotation: V29 4.6 GB
ENCFF621ALY.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 70.4 MB
ENCFF632PAX.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 66.6 MB
ENCFF639POE.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 72.9 MB
ENCFF641IIS.bam bam (alignments); assembly: hg19; genome annotation: V19 4.5 GB
ENCFF644KGR.bam bam (alignments); assembly: hg19; genome annotation: V19 3.8 GB
ENCFF664RZQ.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 68.2 MB
ENCFF668IJE.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 63.1 MB
ENCFF670WYH.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF687SMY.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 65.3 MB
ENCFF692WRP.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 73.7 MB
ENCFF711JIW.fastq fastq (reads) 2.4 GB
ENCFF730KRX.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 71.8 MB
ENCFF746JSB.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 72.0 MB
ENCFF759LRR.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 5.3 GB
ENCFF760FBT.fastq fastq (reads) 1.7 GB
ENCFF768FDW.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 63.4 MB
ENCFF788IQZ.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 64.7 MB
ENCFF788XPX.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 72.9 MB
ENCFF793TCY.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF794ZZH.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 14.1 MB
ENCFF855XJY.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 63.1 MB
ENCFF888RVW.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF901JYO.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 69.7 MB
ENCFF903PJA.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 82.0 MB
ENCFF905QAH.bam bam (alignments); assembly: hg19; genome annotation: V19 2.8 GB
ENCFF915WOP.fastq fastq (reads) 2.6 GB
ENCFF917TWS.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 73.4 MB
ENCFF924RMF.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 55.8 MB
ENCFF925DMT.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 5.9 GB
ENCFF942FAX.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.4 GB
ENCFF953HPC.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 61.3 MB
ENCFF956VEM.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 73.8 MB
ENCFF959BUP.fastq fastq (reads) 1.9 GB
ENCFF976STP.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF977JMX.bam bam (alignments); assembly: GRCh38; genome annotation: V24 2.9 GB
ENCFF978UFG.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 82.3 MB
ENCFF979UMH.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 3.2 MB
ENCFF985ECS.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 73.5 MB
ENCSR416ZJH ENCSR · via encode_api

RNA-seq on K562 cells treated with an shRNA knockdown against PABPN1. (PABPN1_BGKLV28)

Homo sapiens

92 data files
FileTypeSize
ENCFF018JDZ.fastq fastq (reads) 2.7 GB
ENCFF035QOQ.bam bam (alignments); assembly: GRCh38; genome annotation: V24 5.8 GB
ENCFF068JRX.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 91.2 MB
ENCFF070WLK.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 81.3 MB
ENCFF079NNW.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 3.0 MB
ENCFF085KUJ.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 80.5 MB
ENCFF098MKW.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 88.7 MB
ENCFF101MSD.bam bam (alignments); assembly: hg19; genome annotation: V19 3.8 GB
ENCFF111TGX.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 76.2 MB
ENCFF120PYL.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 89.5 MB
ENCFF122KQZ.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF122UIQ.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 86.8 MB
ENCFF129URO.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.7 MB
ENCFF134BDB.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF152ZBQ.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 89.2 MB
ENCFF154EML.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 79.0 MB
ENCFF158XWA.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 79.3 MB
ENCFF160PKJ.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.9 MB
ENCFF170WTB.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 5.5 GB
ENCFF173EOE.bam bam (alignments); assembly: hg19; genome annotation: V19 3.9 GB
ENCFF175IDX.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 75.5 MB
ENCFF179YZU.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 77.0 MB
ENCFF185PSI.bam bam (alignments); assembly: hg19; genome annotation: V19 3.9 GB
ENCFF190HTP.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 80.4 MB
ENCFF214TTT.bam bam (alignments); assembly: hg19; genome annotation: V19 3.8 GB
ENCFF223YVI.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 71.7 MB
ENCFF227INW.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 79.9 MB
ENCFF234VDD.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.9 MB
ENCFF273CYL.fastq fastq (reads) 2.7 GB
ENCFF273ZCQ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 72.1 MB
ENCFF277KIW.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.5 GB
ENCFF304AJG.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 80.5 MB
ENCFF305KZP.bam bam (alignments); assembly: GRCh38; genome annotation: V29 4.7 GB
ENCFF311ESK.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.7 GB
ENCFF312JER.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 83.0 MB
ENCFF327CAL.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 84.2 MB
ENCFF331VML.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 6.3 GB
ENCFF346JPC.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.4 MB
ENCFF347DVM.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 87.6 MB
ENCFF354GKT.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 73.0 MB
ENCFF355CYI.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 77.6 MB
ENCFF362LAP.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 80.7 MB
ENCFF387IFO.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 69.6 MB
ENCFF403ZRW.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.8 GB
ENCFF411XGX.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 4.8 MB
ENCFF415JSQ.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 82.2 MB
ENCFF420GMS.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 77.5 MB
ENCFF423ESU.bam bam (alignments); assembly: hg19; genome annotation: V19 4.6 GB
ENCFF434JBV.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 5.5 GB
ENCFF449AJS.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 82.9 MB
ENCFF451NNK.bam bam (alignments); assembly: GRCh38; genome annotation: V29 5.8 GB
ENCFF476GSK.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 77.8 MB
ENCFF477PDO.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 93.0 MB
ENCFF484SBW.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 5.5 GB
ENCFF496SNC.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 87.6 MB
ENCFF511IOG.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 91.1 MB
ENCFF518HVG.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 79.2 MB
ENCFF535TRM.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 80.1 MB
ENCFF570SAQ.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 5.5 GB
ENCFF574KNF.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 89.4 MB
ENCFF574WHT.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF589VDQ.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.5 MB
ENCFF599MZW.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 74.2 MB
ENCFF599ZAM.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 4.3 MB
ENCFF605EDD.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF616PSW.fastq fastq (reads) 2.6 GB
ENCFF632EIZ.bam bam (alignments); assembly: hg19; genome annotation: V19 4.7 GB
ENCFF687PZS.fastq fastq (reads) 2.6 GB
ENCFF696AUC.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 82.1 MB
ENCFF738MZJ.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 91.2 MB
ENCFF741XGR.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 73.7 MB
ENCFF753VRV.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF759EGU.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF775IFS.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 77.8 MB
ENCFF792FAV.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 15.2 MB
ENCFF792PKI.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 82.2 MB
ENCFF798OZU.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.4 MB
ENCFF827QLY.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.5 MB
ENCFF834YQO.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 75.4 MB
ENCFF841OAL.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 77.5 MB
ENCFF858WKG.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF861UPR.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 70.8 MB
ENCFF873EKK.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 78.1 MB
ENCFF875HVD.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF881GMG.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 5.6 MB
ENCFF914OZW.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 80.2 MB
ENCFF914PFQ.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 93.1 MB
ENCFF925YEN.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 3.6 MB
ENCFF927MSB.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 73.2 MB
ENCFF944QEW.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 75.4 MB
ENCFF946YED.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.4 MB
ENCFF979IHR.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 6.2 GB
ENCSR028YAQ ENCSR · via encode_api

shRNA knockdown against PA2G4 in HepG2 cells followed by RNA-seq. (PA2G4_BGHLV16)

Homo sapiens

92 data files
FileTypeSize
ENCFF018RYB.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 4.0 GB
ENCFF028RGS.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 5.5 MB
ENCFF034YPV.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 47.2 MB
ENCFF035FYR.bam bam (alignments); assembly: hg19; genome annotation: V19 2.3 GB
ENCFF037ZJQ.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 44.8 MB
ENCFF049HNJ.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 49.7 MB
ENCFF060ZTX.fastq fastq (reads) 1.2 GB
ENCFF061LWF.fastq fastq (reads) 1.5 GB
ENCFF100XVC.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 43.7 MB
ENCFF105FFH.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 54.5 MB
ENCFF105NIM.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 50.0 MB
ENCFF106RME.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 49.8 MB
ENCFF109VNU.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 48.3 MB
ENCFF133TJJ.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 49.6 MB
ENCFF136SOB.bam bam (alignments); assembly: hg19; genome annotation: V19 2.0 GB
ENCFF148JEE.bam bam (alignments); assembly: hg19; genome annotation: V19 1.7 GB
ENCFF149CUO.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 2.5 MB
ENCFF149PPM.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.8 MB
ENCFF150AQN.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.2 MB
ENCFF165DFJ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 40.3 MB
ENCFF165HYL.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 49.5 MB
ENCFF167TOA.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 53.3 MB
ENCFF175EXB.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 45.3 MB
ENCFF178BUK.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 53.2 MB
ENCFF182IIF.bam bam (alignments); assembly: hg19; genome annotation: V19 1.7 GB
ENCFF187SKE.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 45.9 MB
ENCFF211YPN.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 42.4 MB
ENCFF232DNW.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 43.1 MB
ENCFF236QEN.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.2 MB
ENCFF244ZQM.bam bam (alignments); assembly: GRCh38; genome annotation: V24 2.9 GB
ENCFF288IQC.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.2 MB
ENCFF306AVY.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 4.1 MB
ENCFF319IZD.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 51.0 MB
ENCFF328XMG.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 50.5 MB
ENCFF331CNP.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 50.9 MB
ENCFF339XSE.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 41.9 MB
ENCFF347ZNK.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 44.1 MB
ENCFF348PUN.bam bam (alignments); assembly: GRCh38; genome annotation: V29 2.1 GB
ENCFF351WKY.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 47.4 MB
ENCFF371FSO.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 48.5 MB
ENCFF393QIH.bam bam (alignments); assembly: hg19; genome annotation: V19 2.3 GB
ENCFF441MEE.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF442ATY.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF446TDD.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 53.2 MB
ENCFF446TUT.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 48.6 MB
ENCFF446UPJ.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF449TPO.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 12.3 MB
ENCFF461DKH.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 49.9 MB
ENCFF477DPL.bam bam (alignments); assembly: GRCh38; genome annotation: V24 2.4 GB
ENCFF486PSG.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.7 MB
ENCFF488XHN.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 49.9 MB
ENCFF514WEH.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 45.0 MB
ENCFF519JRM.fastq fastq (reads) 1.1 GB
ENCFF527HEM.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 3.5 GB
ENCFF535HIV.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 42.5 MB
ENCFF538IRT.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 43.5 MB
ENCFF548DNF.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.8 MB
ENCFF553DSY.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 54.6 MB
ENCFF555DRB.fastq fastq (reads) 1.6 GB
ENCFF578JQC.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF587HWF.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.9 MB
ENCFF596LWP.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 43.5 MB
ENCFF638PWV.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 44.7 MB
ENCFF653TEU.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 46.0 MB
ENCFF681WRB.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 44.9 MB
ENCFF687LTL.bam bam (alignments); assembly: hg19; genome annotation: V19 2.8 GB
ENCFF713NEI.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 3.6 GB
ENCFF724ATS.bam bam (alignments); assembly: GRCh38; genome annotation: V24 1.7 GB
ENCFF729QNS.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 43.6 MB
ENCFF785HIZ.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 45.6 MB
ENCFF786BQC.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF794OWP.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 45.7 MB
ENCFF800ICF.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 48.8 MB
ENCFF801LSC.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF802HRV.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 50.0 MB
ENCFF805JPH.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 45.1 MB
ENCFF836ELC.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 43.5 MB
ENCFF843LEY.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 44.7 MB
ENCFF844WBX.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 2.9 GB
ENCFF865AIP.bam bam (alignments); assembly: GRCh38; genome annotation: V29 2.9 GB
ENCFF874DDJ.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF874EMG.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF889FRC.bam bam (alignments); assembly: GRCh38; genome annotation: V24 2.1 GB
ENCFF889IEM.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 46.3 MB
ENCFF906KJE.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 2.6 GB
ENCFF911BRX.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 2.9 MB
ENCFF914YMY.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF939NBX.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 2.6 GB
ENCFF953PNN.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 39.2 MB
ENCFF963GHH.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 54.6 MB
ENCFF972LYY.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.7 MB
ENCFF976ZHM.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 48.3 MB
ENCSR308IKH ENCSR · via encode_api

shRNA knockdown against HNRNPU in HepG2 cells followed by RNA-seq. (HNRNPU-BGHLV20)

Homo sapiens

92 data files
FileTypeSize
ENCFF027LKU.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 74.8 MB
ENCFF029GXJ.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 70.3 MB
ENCFF032RMV.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 81.2 MB
ENCFF057KLZ.fastq fastq (reads) 2.2 GB
ENCFF061ERN.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 82.4 MB
ENCFF066JDA.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 3.1 MB
ENCFF074ZOP.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 15.2 MB
ENCFF083FVL.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 65.8 MB
ENCFF095PBD.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.9 GB
ENCFF116NGY.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 74.8 MB
ENCFF118VBL.bam bam (alignments); assembly: GRCh38; genome annotation: V29 4.0 GB
ENCFF128NKK.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 68.5 MB
ENCFF149WJV.bam bam (alignments); assembly: hg19; genome annotation: V19 3.3 GB
ENCFF151OOG.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 68.5 MB
ENCFF157HRP.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 59.1 MB
ENCFF157LDC.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 72.6 MB
ENCFF164BOA.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 69.9 MB
ENCFF180SIJ.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 74.8 MB
ENCFF197CGS.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.6 GB
ENCFF200UIG.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF206CPN.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF224MBX.fastq fastq (reads) 2.5 GB
ENCFF227TFN.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 62.5 MB
ENCFF241BIZ.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF246FTB.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 75.3 MB
ENCFF266CFG.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 3.8 MB
ENCFF266HOO.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 66.8 MB
ENCFF276SDE.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 62.6 MB
ENCFF277GLI.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.0 MB
ENCFF292RTX.bam bam (alignments); assembly: hg19; genome annotation: V19 4.4 GB
ENCFF293OLC.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF312TRA.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 74.2 MB
ENCFF317MFT.bam bam (alignments); assembly: hg19; genome annotation: V19 3.9 GB
ENCFF352TZY.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.4 GB
ENCFF353ONP.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 68.9 MB
ENCFF364TBH.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.4 MB
ENCFF384PJL.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 74.3 MB
ENCFF416CKT.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 66.5 MB
ENCFF423GMD.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 76.0 MB
ENCFF436HPH.fastq fastq (reads) 2.4 GB
ENCFF451GID.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.0 GB
ENCFF474IVG.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 5.1 GB
ENCFF477VKJ.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 4.7 GB
ENCFF516UIQ.bam bam (alignments); assembly: hg19; genome annotation: V19 3.8 GB
ENCFF522RMX.bam bam (alignments); assembly: GRCh38; genome annotation: V29 4.6 GB
ENCFF531YGZ.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 72.6 MB
ENCFF533QHC.fastq fastq (reads) 2.0 GB
ENCFF546NFQ.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF556EJB.bam bam (alignments); assembly: hg19; genome annotation: V19 3.3 GB
ENCFF560VRL.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF566BYR.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 68.1 MB
ENCFF584ZWW.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 73.2 MB
ENCFF591PVU.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 67.3 MB
ENCFF599GJR.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 72.0 MB
ENCFF613VPY.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 82.4 MB
ENCFF616RPG.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 76.0 MB
ENCFF617YAO.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 72.7 MB
ENCFF644KVC.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 65.2 MB
ENCFF713DSL.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 65.1 MB
ENCFF716NBU.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 64.6 MB
ENCFF723FGR.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF737PKC.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 61.0 MB
ENCFF740OFJ.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF742SRN.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 73.7 MB
ENCFF755HYB.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 68.2 MB
ENCFF760MNW.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF789EDJ.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 5.6 GB
ENCFF790UFJ.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 79.5 MB
ENCFF799JRP.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 5.6 MB
ENCFF799XYG.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 5.5 GB
ENCFF800WJH.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 70.2 MB
ENCFF807IGU.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.7 MB
ENCFF816USV.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 74.3 MB
ENCFF822XKY.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 80.6 MB
ENCFF826NYW.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.7 MB
ENCFF828LLV.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 74.7 MB
ENCFF837SPN.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 68.0 MB
ENCFF838IVB.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.3 MB
ENCFF840WGM.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 63.5 MB
ENCFF845OVR.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF853BON.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 6.2 GB
ENCFF860ARI.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 72.7 MB
ENCFF863JMK.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF881WBE.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 66.1 MB
ENCFF905JRT.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 80.6 MB
ENCFF910YOE.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF935RCR.bam bam (alignments); assembly: hg19; genome annotation: V19 3.8 GB
ENCFF936LSY.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 4.6 GB
ENCFF951PKR.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 64.3 MB
ENCFF956XPN.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 67.1 MB
ENCFF979KVQ.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 4.4 MB
ENCFF980FXZ.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 66.9 MB
ENCSR022BVV ENCSR · via encode_api

eCLIP experiment on K562 against LSM11

Homo sapiens

36 data files
FileTypeSize
ENCFF005VLT.bigBed bigBed (peaks); assembly: GRCh38 3.4 MB
ENCFF058BLU.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 12.3 MB
ENCFF097BXD.bigBed bigBed (peaks); assembly: GRCh38 408.9 KB
ENCFF116WPI.bigBed bigBed (peaks); assembly: hg19 2.0 MB
ENCFF136HXF.bed bed (peaks); assembly: hg19 1.7 MB
ENCFF203JSP.fastq fastq (reads) 523.7 MB
ENCFF318QEW.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 13.5 MB
ENCFF329QOR.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 12.9 MB
ENCFF350QMY.bigBed bigBed (peaks); assembly: GRCh38 1.8 MB
ENCFF366PDK.bigBed bigBed (peaks); assembly: hg19 1.7 MB
ENCFF408YYK.fastq fastq (reads) 535.7 MB
ENCFF414DIO.bigBed bigBed (peaks); assembly: hg19 3.4 MB
ENCFF418GUW.bed bed (peaks); assembly: hg19 448.4 KB
ENCFF425PPQ.bed bed (peaks); assembly: hg19 1.1 MB
ENCFF438KND.bed bed (peaks); assembly: GRCh38 154.0 KB
ENCFF484RUT.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 21.6 MB
ENCFF513FCX.bed bed (peaks); assembly: GRCh38 198.6 KB
ENCFF516OSP.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 22.9 MB
ENCFF538ZHY.bed bed (peaks); assembly: hg19 28.1 KB
ENCFF583VFV.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 22.0 MB
ENCFF590STZ.bigBed bigBed (peaks); assembly: hg19 902.1 KB
ENCFF597NUC.bed bed (peaks); assembly: hg19 586.1 KB
ENCFF608XEX.bam bam (alignments); assembly: hg19 413.2 MB
ENCFF636BMJ.bam bam (alignments); assembly: hg19 232.4 MB
ENCFF680ZUK.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 21.1 MB
ENCFF733BEV.bed bed (peaks); assembly: GRCh38 1.0 MB
ENCFF760VJY.bed bed (peaks); assembly: GRCh38 1.7 MB
ENCFF816DGB.bigBed bigBed (peaks); assembly: GRCh38 468.2 KB
ENCFF858EHN.bed bed (peaks); assembly: GRCh38 28.2 KB
ENCFF875THF.fastq fastq (reads) 534.1 MB
ENCFF889WRY.bigBed bigBed (peaks); assembly: hg19 1.3 MB
ENCFF924IHY.fastq fastq (reads) 526.9 MB
ENCFF938CFK.bam bam (alignments); assembly: GRCh38 221.4 MB
ENCFF938ROF.bigBed bigBed (peaks); assembly: hg19 1.8 MB
ENCFF955SIM.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 12.7 MB
ENCFF989NBF.bam bam (alignments); assembly: GRCh38 400.8 MB
ENCSR580TGX ENCSR · via encode_api

RNA-seq on K562 cells treated with a CRISPR gRNA against POLR2G. (POLR2G-BGKcLV06)

Homo sapiens

92 data files
FileTypeSize
ENCFF011JKW.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 74.7 MB
ENCFF027XIE.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 63.1 MB
ENCFF032CSB.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 73.2 MB
ENCFF034DZX.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 72.2 MB
ENCFF035ACR.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 71.3 MB
ENCFF042DKE.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 86.7 MB
ENCFF043BEL.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 83.7 MB
ENCFF067DJK.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 75.5 MB
ENCFF075LPN.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF097CDW.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 85.8 MB
ENCFF098TQV.bam bam (alignments); assembly: hg19; genome annotation: V19 2.7 GB
ENCFF112FPN.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 4.4 GB
ENCFF115JUZ.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 3.3 GB
ENCFF123UKZ.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 83.0 MB
ENCFF130DUK.fastq fastq (reads) 1.5 GB
ENCFF149RLC.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 70.9 MB
ENCFF171KAY.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 68.7 MB
ENCFF193JEE.fastq fastq (reads) 2.1 GB
ENCFF205OKK.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF213AXP.bam bam (alignments); assembly: hg19; genome annotation: V19 3.6 GB
ENCFF234QEQ.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 97.6 MB
ENCFF246WJO.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.7 MB
ENCFF270YBV.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 72.8 MB
ENCFF277VIU.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 64.7 MB
ENCFF279NLL.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF301QHY.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 69.5 MB
ENCFF318IDK.bam bam (alignments); assembly: GRCh38; genome annotation: V29 2.8 GB
ENCFF330AQC.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF340WVE.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 83.7 MB
ENCFF344TZO.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF359OFM.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 3.3 GB
ENCFF362JSK.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 80.2 MB
ENCFF370BAU.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 4.5 MB
ENCFF393CTM.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 89.7 MB
ENCFF397TNH.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 88.3 MB
ENCFF407MCU.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 83.7 MB
ENCFF420GDF.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 71.9 MB
ENCFF424AUJ.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 84.4 MB
ENCFF433QWO.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 97.7 MB
ENCFF448RPM.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF466GJD.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.7 MB
ENCFF469XHY.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 96.4 MB
ENCFF472EEK.bam bam (alignments); assembly: GRCh38; genome annotation: V24 2.8 GB
ENCFF475HOO.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 5.7 MB
ENCFF476GOQ.fastq fastq (reads) 2.1 GB
ENCFF508SMO.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 73.7 MB
ENCFF510WYW.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.7 GB
ENCFF530YMF.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 84.9 MB
ENCFF541NKZ.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 71.4 MB
ENCFF552YJL.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 73.1 MB
ENCFF557UNS.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF561DLX.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF562UYT.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 3.8 GB
ENCFF575NQL.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF590DLA.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 67.8 MB
ENCFF594PPJ.bam bam (alignments); assembly: GRCh38; genome annotation: V29 3.7 GB
ENCFF596YBC.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 14.7 MB
ENCFF608WPQ.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 78.7 MB
ENCFF611YVT.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 85.6 MB
ENCFF632MXM.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF635GQJ.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 93.8 MB
ENCFF654AEM.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 86.8 MB
ENCFF695UCF.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF696YWW.bam bam (alignments); assembly: hg19; genome annotation: V19 2.2 GB
ENCFF697HFC.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 85.5 MB
ENCFF718SCG.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 67.4 MB
ENCFF734PAT.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 83.0 MB
ENCFF739LBE.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 79.5 MB
ENCFF743DRA.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 81.6 MB
ENCFF765BFE.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.0 GB
ENCFF770TNR.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.3 MB
ENCFF797KWX.bam bam (alignments); assembly: hg19; genome annotation: V19 2.2 GB
ENCFF802OFA.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 96.4 MB
ENCFF829VPO.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 95.0 MB
ENCFF835JMY.bam bam (alignments); assembly: GRCh38; genome annotation: V24 2.2 GB
ENCFF847WGY.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 74.8 MB
ENCFF857BZH.bam bam (alignments); assembly: hg19; genome annotation: V19 3.0 GB
ENCFF860BSO.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 84.4 MB
ENCFF862SNC.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 4.4 GB
ENCFF872MIB.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 5.1 GB
ENCFF896RSA.bam bam (alignments); assembly: hg19; genome annotation: V19 3.0 GB
ENCFF902WYP.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 4.2 MB
ENCFF916NIL.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.4 MB
ENCFF917DIZ.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 75.9 MB
ENCFF919MOW.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 77.6 MB
ENCFF925LZX.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF926RZU.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 75.1 MB
ENCFF945DBK.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 3.5 MB
ENCFF949KID.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 83.6 MB
ENCFF976BPL.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.0 MB
ENCFF981FSJ.fastq fastq (reads) 1.6 GB
ENCFF983MYU.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 83.7 MB
ENCSR481AYC ENCSR · via encode_api

shRNA knockdown against BCLAF1 in HepG2 cells followed by RNA-seq. (BCLAF1_BGHLV17)

Homo sapiens

92 data files
FileTypeSize
ENCFF002JTH.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 87.6 MB
ENCFF052SPD.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 94.7 MB
ENCFF066CDX.bam bam (alignments); assembly: GRCh38; genome annotation: V29 6.1 GB
ENCFF073LPD.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 85.7 MB
ENCFF101BXP.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.3 GB
ENCFF111ZXQ.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 85.6 MB
ENCFF113BHI.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 85.5 MB
ENCFF128EJX.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 96.4 MB
ENCFF132GHM.fastq fastq (reads) 2.3 GB
ENCFF138OJE.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 81.8 MB
ENCFF141MCE.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 82.7 MB
ENCFF154XRY.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 97.1 MB
ENCFF161VPC.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.4 MB
ENCFF181XKF.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 5.1 GB
ENCFF182MIO.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 88.2 MB
ENCFF182RAD.fastq fastq (reads) 3.4 GB
ENCFF183JNZ.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.6 GB
ENCFF192RKD.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF211AXG.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 73.0 MB
ENCFF254QYF.bam bam (alignments); assembly: hg19; genome annotation: V19 3.6 GB
ENCFF259HJO.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 80.5 MB
ENCFF261KWZ.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 73.5 MB
ENCFF264GJC.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 75.1 MB
ENCFF267DZP.fastq fastq (reads) 2.3 GB
ENCFF267JVY.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 95.2 MB
ENCFF270ZJS.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF288XGN.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 87.0 MB
ENCFF312HWG.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 5.8 GB
ENCFF314ABD.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 77.6 MB
ENCFF322KLK.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 81.9 MB
ENCFF325FNG.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.8 MB
ENCFF348RQO.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 75.0 MB
ENCFF359UWT.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 83.4 MB
ENCFF390DDW.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 70.4 MB
ENCFF395WSF.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF397SJD.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.0 MB
ENCFF400LQQ.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.3 MB
ENCFF404XJJ.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 8.3 GB
ENCFF405KRF.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 95.1 MB
ENCFF411RMW.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 68.5 MB
ENCFF411XAT.bam bam (alignments); assembly: hg19; genome annotation: V19 5.1 GB
ENCFF436CFX.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF444HVT.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 67.2 MB
ENCFF452EII.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 85.2 MB
ENCFF473MUQ.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 5.1 GB
ENCFF483JFK.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 83.4 MB
ENCFF492JFQ.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 70.1 MB
ENCFF495WOT.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 88.2 MB
ENCFF497BSV.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 4.3 MB
ENCFF554SSE.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 3.9 MB
ENCFF559JUE.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 85.3 MB
ENCFF560RLJ.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 65.2 MB
ENCFF580GPY.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF587FCY.bam bam (alignments); assembly: hg19; genome annotation: V19 4.2 GB
ENCFF598PKV.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 87.5 MB
ENCFF603MQB.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 75.1 MB
ENCFF609PLJ.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 97.0 MB
ENCFF644KIX.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 3.2 MB
ENCFF644ZQS.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 7.3 GB
ENCFF647TRN.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 81.2 MB
ENCFF670VTV.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF701IVM.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 80.2 MB
ENCFF710NNY.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 73.1 MB
ENCFF736OUK.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 16.0 MB
ENCFF769SDH.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF773IOD.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF773MUK.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.9 MB
ENCFF775APS.bam bam (alignments); assembly: hg19; genome annotation: V19 5.1 GB
ENCFF793JSM.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 71.4 MB
ENCFF796HSI.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 75.6 MB
ENCFF808MJW.bam bam (alignments); assembly: hg19; genome annotation: V19 3.5 GB
ENCFF817YDZ.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 69.7 MB
ENCFF823DVX.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 72.5 MB
ENCFF842ZZW.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF844IIU.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 80.5 MB
ENCFF857WVF.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF863BLM.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 68.4 MB
ENCFF863SFE.fastq fastq (reads) 3.2 GB
ENCFF869QXC.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 7.4 GB
ENCFF878AAZ.bam bam (alignments); assembly: hg19; genome annotation: V19 5.9 GB
ENCFF878PXO.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 82.6 MB
ENCFF881ZZE.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF904VNU.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 82.9 MB
ENCFF905LZH.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 73.6 MB
ENCFF907ZHY.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 89.4 MB
ENCFF917CAD.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 73.9 MB
ENCFF919OFB.bam bam (alignments); assembly: GRCh38; genome annotation: V24 6.1 GB
ENCFF934MCA.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 83.5 MB
ENCFF977TDX.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF986DTN.bam bam (alignments); assembly: GRCh38; genome annotation: V29 4.3 GB
ENCFF987VHQ.bam bam (alignments); assembly: GRCh38; genome annotation: V24 5.1 GB
ENCFF989BIT.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 5.6 MB
ENCSR105LOV ENCSR · via encode_api

RNA-seq on K562 cells treated with a CRISPR gRNA against PCBP3. (PCBP3-BGKcLV06)

Homo sapiens

92 data files
FileTypeSize
ENCFF020ABN.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 107.1 MB
ENCFF023PIU.bam bam (alignments); assembly: hg19; genome annotation: V19 5.9 GB
ENCFF028WJA.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 131.5 MB
ENCFF037HEU.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 124.0 MB
ENCFF059ZBG.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF072CVB.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 129.8 MB
ENCFF105BAI.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 107.1 MB
ENCFF105IZP.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 123.5 MB
ENCFF109OIP.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.5 MB
ENCFF118AOF.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF118RCP.bam bam (alignments); assembly: GRCh38; genome annotation: V24 6.0 GB
ENCFF123TJX.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 111.5 MB
ENCFF129OYE.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 113.3 MB
ENCFF153TIQ.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF162JCS.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 95.0 MB
ENCFF203OUV.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 124.0 MB
ENCFF208OXV.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.5 MB
ENCFF213PFE.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF214NFX.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 119.3 MB
ENCFF246UJP.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 113.8 MB
ENCFF272VGB.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 101.0 MB
ENCFF288GIB.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 133.0 MB
ENCFF294FYY.bam bam (alignments); assembly: GRCh38; genome annotation: V29 5.6 GB
ENCFF308ASN.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 111.4 MB
ENCFF311LXK.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.8 GB
ENCFF315EER.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 125.0 MB
ENCFF316BBY.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.7 MB
ENCFF316SSC.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.5 MB
ENCFF319QSH.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 105.0 MB
ENCFF320TAO.bam bam (alignments); assembly: hg19; genome annotation: V19 4.8 GB
ENCFF336AJD.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.9 MB
ENCFF345XGF.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 15.5 MB
ENCFF347DFY.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 103.4 MB
ENCFF351WRX.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 108.7 MB
ENCFF355JEO.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.4 GB
ENCFF365WJV.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 111.4 MB
ENCFF394GCT.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 117.4 MB
ENCFF396SNO.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 103.5 MB
ENCFF401SMK.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 5.6 MB
ENCFF406WGA.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 7.0 GB
ENCFF428CTY.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF471PRF.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 7.0 GB
ENCFF480QUD.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF536HYF.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 111.6 MB
ENCFF539PES.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 105.0 MB
ENCFF541PFT.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 6.1 GB
ENCFF543ROP.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF545KOU.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 106.7 MB
ENCFF561NVL.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 4.0 MB
ENCFF579LIU.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF582WYH.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF586QMF.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 116.5 MB
ENCFF609YSZ.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 113.5 MB
ENCFF631IPP.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 108.6 MB
ENCFF633JBL.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 8.1 GB
ENCFF637LBV.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 125.5 MB
ENCFF643SJN.bam bam (alignments); assembly: GRCh38; genome annotation: V29 6.0 GB
ENCFF651LRQ.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 109.9 MB
ENCFF666AOH.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 104.6 MB
ENCFF668DCN.bam bam (alignments); assembly: hg19; genome annotation: V19 4.8 GB
ENCFF690MEN.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 113.9 MB
ENCFF736GGP.fastq fastq (reads) 3.0 GB
ENCFF754ADI.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 128.3 MB
ENCFF756AJO.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 101.4 MB
ENCFF757NXE.fastq fastq (reads) 3.0 GB
ENCFF765BLA.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 6.1 GB
ENCFF778YIJ.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF795LIG.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 133.0 MB
ENCFF802ABM.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 116.1 MB
ENCFF812OKM.fastq fastq (reads) 3.4 GB
ENCFF813XOL.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 7.1 GB
ENCFF823DFY.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 115.2 MB
ENCFF833JJC.bam bam (alignments); assembly: GRCh38; genome annotation: V24 5.6 GB
ENCFF836WEM.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 116.2 MB
ENCFF845FHR.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 131.5 MB
ENCFF847QOS.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 97.4 MB
ENCFF848NEM.bam bam (alignments); assembly: hg19; genome annotation: V19 5.2 GB
ENCFF848XVO.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 116.0 MB
ENCFF853OBT.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 113.3 MB
ENCFF854FXX.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.5 MB
ENCFF857TSM.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 111.5 MB
ENCFF861NZC.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 109.1 MB
ENCFF895STR.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 125.5 MB
ENCFF896VMH.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 109.0 MB
ENCFF906DMH.bam bam (alignments); assembly: hg19; genome annotation: V19 4.3 GB
ENCFF916GLB.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 4.5 MB
ENCFF923CVD.fastq fastq (reads) 3.4 GB
ENCFF938NAZ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 109.7 MB
ENCFF946FCZ.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 102.0 MB
ENCFF948POJ.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 4.8 MB
ENCFF948VCK.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.0 MB
ENCFF976ZBW.bam bam (alignments); assembly: hg19; genome annotation: V19 4.3 GB
ENCSR309PPC ENCSR · via encode_api

shRNA knockdown against PA2G4 in K562 cells followed by RNA-seq. (PA2G4_BGKLV19)

Homo sapiens

92 data files
FileTypeSize
ENCFF036OPB.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 66.7 MB
ENCFF039UEF.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 70.3 MB
ENCFF050DIX.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 72.5 MB
ENCFF055LYM.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 5.5 MB
ENCFF064XMH.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 14.9 MB
ENCFF065MDT.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 75.6 MB
ENCFF085KUM.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 69.3 MB
ENCFF095ODS.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 6.4 GB
ENCFF106YFD.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 5.5 GB
ENCFF110VFE.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 68.8 MB
ENCFF116BBK.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 72.0 MB
ENCFF123CJB.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 64.9 MB
ENCFF124ARP.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 70.5 MB
ENCFF142UXQ.bam bam (alignments); assembly: hg19; genome annotation: V19 4.4 GB
ENCFF160FJA.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 65.5 MB
ENCFF180XCZ.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 77.5 MB
ENCFF182BIE.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 6.2 GB
ENCFF191UDE.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.9 MB
ENCFF195PSM.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 69.7 MB
ENCFF199PLX.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 68.9 MB
ENCFF210SFV.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 64.0 MB
ENCFF225TRZ.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.5 GB
ENCFF236JGN.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 77.5 MB
ENCFF253GVU.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 3.9 MB
ENCFF254DML.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 78.5 MB
ENCFF255DUW.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 73.9 MB
ENCFF263NEP.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 67.0 MB
ENCFF265BBJ.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.5 MB
ENCFF265KTO.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 65.5 MB
ENCFF266LDQ.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 5.6 GB
ENCFF270GES.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 80.1 MB
ENCFF271SSG.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 76.5 MB
ENCFF283XJX.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF287PPC.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF290NRN.bam bam (alignments); assembly: GRCh38; genome annotation: V29 4.5 GB
ENCFF296YMS.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 79.5 MB
ENCFF309XON.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.7 GB
ENCFF315NKG.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 71.6 MB
ENCFF323BKM.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.3 MB
ENCFF341FPH.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 64.3 MB
ENCFF344SBZ.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 72.6 MB
ENCFF355MHA.bam bam (alignments); assembly: hg19; genome annotation: V19 3.6 GB
ENCFF357ODZ.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF373QZA.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 76.6 MB
ENCFF377KEV.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF414XHQ.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 79.1 MB
ENCFF418DBS.fastq fastq (reads) 2.3 GB
ENCFF429TWH.bam bam (alignments); assembly: hg19; genome annotation: V19 4.3 GB
ENCFF441WUR.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 62.6 MB
ENCFF489TPJ.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 4.1 MB
ENCFF490WTR.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 76.6 MB
ENCFF495EWZ.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 70.4 MB
ENCFF502BQW.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 80.1 MB
ENCFF503QON.bam bam (alignments); assembly: hg19; genome annotation: V19 3.7 GB
ENCFF524ZGL.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF528HMA.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 68.2 MB
ENCFF542WGG.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.5 MB
ENCFF546DDS.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 69.7 MB
ENCFF547KPJ.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF547ZAL.bam bam (alignments); assembly: GRCh38; genome annotation: V29 4.4 GB
ENCFF554YYL.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 5.6 GB
ENCFF563TKY.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF564LTO.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 69.2 MB
ENCFF578PFW.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 70.8 MB
ENCFF579XDD.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.7 MB
ENCFF580KJV.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 70.5 MB
ENCFF601GKI.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 67.4 MB
ENCFF602TYI.fastq fastq (reads) 2.5 GB
ENCFF615MSB.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 67.8 MB
ENCFF667AGC.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.3 MB
ENCFF668UOE.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 3.4 MB
ENCFF683PJT.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.6 GB
ENCFF698CLZ.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.8 MB
ENCFF723DFE.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF738JGJ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 68.6 MB
ENCFF760FTG.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF775PKF.bam bam (alignments); assembly: hg19; genome annotation: V19 3.7 GB
ENCFF786YAW.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 64.2 MB
ENCFF824JSK.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 69.2 MB
ENCFF832JZQ.fastq fastq (reads) 2.4 GB
ENCFF877BTM.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 79.0 MB
ENCFF898LWY.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 67.7 MB
ENCFF905ZRU.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 72.0 MB
ENCFF907FDN.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 72.0 MB
ENCFF909VJA.bam bam (alignments); assembly: hg19; genome annotation: V19 3.6 GB
ENCFF923XVN.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 72.1 MB
ENCFF932HCJ.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 67.5 MB
ENCFF935HPQ.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 5.5 GB
ENCFF938NSK.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF975IBI.fastq fastq (reads) 2.3 GB
ENCFF979MVW.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 66.1 MB
ENCFF989TMS.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.4 GB
ENCSR704XYB ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) input control experiment of MSI1

1 data file
FileTypeSize
ENCFF919AUN.fastq fastq (reads) 472.0 MB
ENCSR101OPF ENCSR · via encode_api

RNA-seq on K562 cells treated with an shRNA knockdown against SUCLG1. (SUCLG1-BGKLV25)

Homo sapiens

92 data files
FileTypeSize
ENCFF019FGJ.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 88.5 MB
ENCFF024FSN.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 108.0 MB
ENCFF041TND.bam bam (alignments); assembly: hg19; genome annotation: V19 7.0 GB
ENCFF058GFD.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF061ROJ.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 4.9 MB
ENCFF067HYF.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 119.8 MB
ENCFF080PJZ.bam bam (alignments); assembly: hg19; genome annotation: V19 7.0 GB
ENCFF087PDS.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 101.9 MB
ENCFF101BJR.bam bam (alignments); assembly: GRCh38; genome annotation: V24 8.6 GB
ENCFF125TDM.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.5 MB
ENCFF171YKW.bam bam (alignments); assembly: GRCh38; genome annotation: V24 7.0 GB
ENCFF174OLB.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.9 MB
ENCFF200YUR.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 9.5 GB
ENCFF207BXG.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 116.7 MB
ENCFF211SKL.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.9 MB
ENCFF218EQR.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 104.7 MB
ENCFF223MHC.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 116.4 MB
ENCFF228IBU.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 117.0 MB
ENCFF233OUA.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 112.5 MB
ENCFF248CKE.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 119.2 MB
ENCFF253HGR.bam bam (alignments); assembly: hg19; genome annotation: V19 8.4 GB
ENCFF264TUA.bam bam (alignments); assembly: GRCh38; genome annotation: V24 5.8 GB
ENCFF265FOV.bam bam (alignments); assembly: hg19; genome annotation: V19 6.8 GB
ENCFF269LWS.fastq fastq (reads) 3.7 GB
ENCFF270BTQ.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 98.1 MB
ENCFF271XFS.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 107.6 MB
ENCFF299AAM.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 116.5 MB
ENCFF302LPL.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 101.4 MB
ENCFF306VJJ.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 6.3 MB
ENCFF322ZTG.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 91.1 MB
ENCFF362LTO.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 115.8 MB
ENCFF381DTS.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 5.6 MB
ENCFF381NCS.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 99.5 MB
ENCFF421ADH.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 111.0 MB
ENCFF430DLI.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 113.2 MB
ENCFF431GBO.bam bam (alignments); assembly: GRCh38; genome annotation: V29 7.0 GB
ENCFF433XBB.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 113.9 MB
ENCFF434GBU.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.5 MB
ENCFF446QUL.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF455EJP.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 111.7 MB
ENCFF465EMW.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 18.2 MB
ENCFF484NIT.fastq fastq (reads) 4.5 GB
ENCFF496FZB.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 99.1 MB
ENCFF503EDI.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 119.8 MB
ENCFF509HNE.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 131.8 MB
ENCFF510OKI.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 91.1 MB
ENCFF516ZJL.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 112.5 MB
ENCFF526SEE.bam bam (alignments); assembly: hg19; genome annotation: V19 5.7 GB
ENCFF527LBB.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 121.0 MB
ENCFF530UFK.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 100.6 MB
ENCFF544IME.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 110.5 MB
ENCFF564KZC.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 131.3 MB
ENCFF588QQW.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF604CJY.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.7 MB
ENCFF629SZT.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 10.7 GB
ENCFF655QSO.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 4.4 MB
ENCFF657BWK.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF657QGK.fastq fastq (reads) 3.6 GB
ENCFF680IQR.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 7.7 GB
ENCFF685LZZ.bam bam (alignments); assembly: GRCh38; genome annotation: V29 8.6 GB
ENCFF691IFP.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 118.8 MB
ENCFF712YGH.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 8.6 GB
ENCFF723SNU.bam bam (alignments); assembly: GRCh38; genome annotation: V24 7.1 GB
ENCFF727KSH.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 113.5 MB
ENCFF735VCJ.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 100.0 MB
ENCFF741IAI.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF746ONA.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF759IDV.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 131.7 MB
ENCFF816FEX.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 92.9 MB
ENCFF817AWZ.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 133.5 MB
ENCFF821JHP.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.4 MB
ENCFF825TDT.bam bam (alignments); assembly: hg19; genome annotation: V19 5.7 GB
ENCFF872XND.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 101.9 MB
ENCFF879YSF.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 113.9 MB
ENCFF886LQW.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 93.5 MB
ENCFF895XAK.fastq fastq (reads) 4.5 GB
ENCFF898GQE.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF901ZZT.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 118.1 MB
ENCFF912XEZ.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF926HWC.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 7.6 GB
ENCFF929RPD.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 133.5 MB
ENCFF938POK.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 98.6 MB
ENCFF941HOT.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF941RGI.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.0 MB
ENCFF946NHI.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 133.1 MB
ENCFF951PGL.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 90.8 MB
ENCFF953GMI.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 97.1 MB
ENCFF975MPF.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.5 MB
ENCFF979OCF.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 99.6 MB
ENCFF986XFR.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 99.5 MB
ENCFF991TSA.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 9.5 GB
ENCFF995UIN.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 108.1 MB
ENCSR453HKS ENCSR · via encode_api

RNA-seq on K562 cells treated with an shRNA knockdown against XPO5. (XPO5_BGKLV28)

Homo sapiens

92 data files
FileTypeSize
ENCFF003MVF.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 89.8 MB
ENCFF017JIH.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.5 MB
ENCFF026NKB.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 3.7 MB
ENCFF037CZQ.bam bam (alignments); assembly: hg19; genome annotation: V19 4.3 GB
ENCFF041ZLE.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 79.9 MB
ENCFF052PAR.fastq fastq (reads) 2.8 GB
ENCFF054AOA.bam bam (alignments); assembly: hg19; genome annotation: V19 5.2 GB
ENCFF069GFC.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 80.1 MB
ENCFF070OXW.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 4.3 MB
ENCFF077MJK.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF121BCY.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 79.0 MB
ENCFF160AJB.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 79.3 MB
ENCFF164ISW.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 91.9 MB
ENCFF174KMG.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.5 GB
ENCFF187JGX.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 79.2 MB
ENCFF188RRK.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 76.0 MB
ENCFF196SQK.bam bam (alignments); assembly: GRCh38; genome annotation: V24 5.5 GB
ENCFF213WRS.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 6.0 GB
ENCFF214WIU.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 90.9 MB
ENCFF226LNY.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 80.0 MB
ENCFF228CIU.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 92.8 MB
ENCFF254DEP.fastq fastq (reads) 2.8 GB
ENCFF260LWA.bam bam (alignments); assembly: hg19; genome annotation: V19 5.3 GB
ENCFF267VOZ.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.4 MB
ENCFF272DXH.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 79.3 MB
ENCFF273BUV.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 6.0 GB
ENCFF281INK.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.9 MB
ENCFF291XKX.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.6 GB
ENCFF316ZPA.bam bam (alignments); assembly: GRCh38; genome annotation: V29 5.6 GB
ENCFF355CQY.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 77.4 MB
ENCFF356CHE.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 72.6 MB
ENCFF368SSL.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 74.5 MB
ENCFF379OAQ.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 77.8 MB
ENCFF393VSN.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF429QFX.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF437QPU.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.4 MB
ENCFF437XUU.bam bam (alignments); assembly: hg19; genome annotation: V19 4.5 GB
ENCFF444JWS.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 91.6 MB
ENCFF448CWR.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 76.1 MB
ENCFF450PIM.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF455TIP.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 70.9 MB
ENCFF457WZB.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 79.4 MB
ENCFF475HEF.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 6.8 GB
ENCFF485JUE.bam bam (alignments); assembly: hg19; genome annotation: V19 4.3 GB
ENCFF515NBR.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 91.0 MB
ENCFF554LYK.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 5.5 MB
ENCFF563DCP.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 81.2 MB
ENCFF569JDC.fastq fastq (reads) 2.9 GB
ENCFF570YAW.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 72.4 MB
ENCFF581MAL.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 69.0 MB
ENCFF588PYP.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF592MGW.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 81.7 MB
ENCFF592SZH.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 74.4 MB
ENCFF592UJA.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 6.4 GB
ENCFF595SNA.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 4.6 MB
ENCFF628FGD.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 73.0 MB
ENCFF634RGS.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.9 MB
ENCFF678PFM.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 78.9 MB
ENCFF678QIV.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 78.4 MB
ENCFF679HGP.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 80.7 MB
ENCFF692QUH.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF721WCK.bam bam (alignments); assembly: GRCh38; genome annotation: V24 5.5 GB
ENCFF724QJC.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF726VIV.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 74.0 MB
ENCFF732EWE.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 92.8 MB
ENCFF748UAT.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.5 MB
ENCFF766GUZ.fastq fastq (reads) 2.9 GB
ENCFF767OCD.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF769NGO.bam bam (alignments); assembly: GRCh38; genome annotation: V29 5.5 GB
ENCFF774UWV.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 5.6 GB
ENCFF779PNB.bam bam (alignments); assembly: hg19; genome annotation: V19 4.5 GB
ENCFF785YQJ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 81.1 MB
ENCFF808QQZ.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 79.7 MB
ENCFF812ARP.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 81.6 MB
ENCFF813VFB.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 90.0 MB
ENCFF827ZVT.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 91.6 MB
ENCFF837KKP.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF839WCG.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 69.8 MB
ENCFF857PSQ.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF874YYT.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 80.7 MB
ENCFF889WPQ.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 91.9 MB
ENCFF903QZU.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 5.7 GB
ENCFF906LTJ.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 79.3 MB
ENCFF907HKI.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 91.1 MB
ENCFF907MMP.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 90.9 MB
ENCFF923HGZ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 74.4 MB
ENCFF935QNK.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 72.5 MB
ENCFF939RFQ.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.7 MB
ENCFF958CSB.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 81.3 MB
ENCFF979HVN.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 71.6 MB
ENCFF986KXS.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 81.1 MB
ENCFF988VZR.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 15.8 MB
ENCSR905NIK ENCSR · via encode_api

RNA-seq on K562 cells treated with a CRISPR gRNA against SRSF4. (SRSF4-BGKcLV04-B)

Homo sapiens

92 data files
FileTypeSize
ENCFF015VUX.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 5.7 GB
ENCFF018BCZ.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF019IZV.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 5.6 MB
ENCFF024HQA.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.4 MB
ENCFF031QMZ.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.6 GB
ENCFF042IHR.bam bam (alignments); assembly: GRCh38; genome annotation: V29 4.5 GB
ENCFF043OVT.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 91.9 MB
ENCFF052ZHR.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF083WCS.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 87.6 MB
ENCFF094WDO.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 109.6 MB
ENCFF097BOP.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 88.1 MB
ENCFF097YET.fastq fastq (reads) 2.6 GB
ENCFF103ZTW.fastq fastq (reads) 2.7 GB
ENCFF124AGE.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 97.5 MB
ENCFF124YYU.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 84.0 MB
ENCFF126OVL.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 6.5 GB
ENCFF131QWX.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.7 GB
ENCFF132NEZ.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.8 MB
ENCFF141OWV.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.5 MB
ENCFF144SCX.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 91.3 MB
ENCFF163AFJ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 93.6 MB
ENCFF190CAM.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.7 GB
ENCFF191FIB.fastq fastq (reads) 2.7 GB
ENCFF193YII.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 93.8 MB
ENCFF209FXB.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 81.8 MB
ENCFF236FUD.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 92.4 MB
ENCFF246QMI.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 91.6 MB
ENCFF256VAD.bam bam (alignments); assembly: hg19; genome annotation: V19 3.6 GB
ENCFF266OBD.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 86.7 MB
ENCFF272LJR.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 94.6 MB
ENCFF276OFA.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 93.2 MB
ENCFF281TFT.bam bam (alignments); assembly: hg19; genome annotation: V19 4.4 GB
ENCFF286DJP.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF305PWR.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 94.5 MB
ENCFF313ILN.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 104.3 MB
ENCFF328QZE.bam bam (alignments); assembly: hg19; genome annotation: V19 4.5 GB
ENCFF351WXH.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF353JLM.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF406QII.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 89.9 MB
ENCFF418ZFA.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 104.0 MB
ENCFF421KTQ.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 109.6 MB
ENCFF422RBD.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 95.6 MB
ENCFF428CZR.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 97.3 MB
ENCFF452FDF.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 98.9 MB
ENCFF477FWA.bam bam (alignments); assembly: GRCh38; genome annotation: V29 4.7 GB
ENCFF485AVX.fastq fastq (reads) 2.6 GB
ENCFF500DHJ.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 12.3 MB
ENCFF515FAH.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 5.3 GB
ENCFF525IFF.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 3.6 MB
ENCFF545HPZ.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF598JCC.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.9 MB
ENCFF600GWQ.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 107.8 MB
ENCFF603EJP.bam bam (alignments); assembly: hg19; genome annotation: V19 3.7 GB
ENCFF623BTU.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.9 MB
ENCFF626QLO.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF646IUC.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.5 MB
ENCFF651HBD.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 94.8 MB
ENCFF654GUG.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 105.8 MB
ENCFF655PIF.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 104.3 MB
ENCFF657UYP.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 94.3 MB
ENCFF675VXO.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 90.7 MB
ENCFF677OOV.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 94.8 MB
ENCFF685YTN.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF689QUJ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 90.7 MB
ENCFF702LOG.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 105.6 MB
ENCFF708PPM.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 105.7 MB
ENCFF710HBC.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 88.5 MB
ENCFF739RFY.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.5 GB
ENCFF760IXJ.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.4 MB
ENCFF778NLK.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 85.6 MB
ENCFF785BDC.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 107.7 MB
ENCFF788BXM.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 6.2 GB
ENCFF795SHZ.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 95.8 MB
ENCFF804MGA.bam bam (alignments); assembly: hg19; genome annotation: V19 3.6 GB
ENCFF810YSJ.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 85.9 MB
ENCFF820OWS.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 4.1 MB
ENCFF856HEC.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 5.4 GB
ENCFF867POG.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 93.8 MB
ENCFF885EJU.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF924ECF.bam bam (alignments); assembly: hg19; genome annotation: V19 3.7 GB
ENCFF930NLB.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 4.3 MB
ENCFF931QCH.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 92.6 MB
ENCFF934HAZ.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 94.5 MB
ENCFF947EZP.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 97.2 MB
ENCFF948XUH.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF949RDR.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 96.5 MB
ENCFF949VNU.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 5.6 GB
ENCFF968NEU.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 96.9 MB
ENCFF982DJA.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 107.8 MB
ENCFF984WDA.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 102.5 MB
ENCFF991ALR.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 83.1 MB
ENCFF998HBM.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 89.0 MB
ENCSR972AZD ENCSR · via encode_api

RNA-seq on K562 cells treated with a CRISPR gRNA against SRSF9. (SRSF9-BGKcLV06)

Homo sapiens

92 data files
FileTypeSize
ENCFF012ASI.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 87.0 MB
ENCFF015UDX.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.8 GB
ENCFF028FIE.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 89.6 MB
ENCFF032GVD.bam bam (alignments); assembly: hg19; genome annotation: V19 4.7 GB
ENCFF043PTM.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 15.2 MB
ENCFF063LNQ.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF109HEB.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 88.6 MB
ENCFF113LNU.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 73.5 MB
ENCFF153QRU.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.8 MB
ENCFF153TZS.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 94.5 MB
ENCFF161QNM.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.4 MB
ENCFF179IHL.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 85.0 MB
ENCFF198SJB.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 103.4 MB
ENCFF205EHX.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 91.9 MB
ENCFF216LOK.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 87.5 MB
ENCFF228TOK.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.3 MB
ENCFF246VFN.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 4.7 GB
ENCFF248RCK.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.9 MB
ENCFF276SWG.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 82.2 MB
ENCFF284TTD.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.5 MB
ENCFF287PJC.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 78.5 MB
ENCFF291UDX.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.0 MB
ENCFF306RNJ.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 80.8 MB
ENCFF307UQN.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF317QKY.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 88.4 MB
ENCFF335XUF.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF350YVA.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 76.4 MB
ENCFF357CSV.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF357JQR.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 78.1 MB
ENCFF361AAG.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 87.3 MB
ENCFF367UMH.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.6 GB
ENCFF379CHV.bam bam (alignments); assembly: hg19; genome annotation: V19 3.5 GB
ENCFF381FIR.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.8 GB
ENCFF398NMI.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 77.5 MB
ENCFF403KLX.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 90.1 MB
ENCFF428ZAS.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF430LZI.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF432LXR.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.7 MB
ENCFF432PFJ.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.4 MB
ENCFF436MYW.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 88.4 MB
ENCFF447ZMT.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 5.6 MB
ENCFF491FWS.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF496LTI.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 81.5 MB
ENCFF499BFQ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 71.3 MB
ENCFF507UYB.bam bam (alignments); assembly: hg19; genome annotation: V19 2.8 GB
ENCFF508SUJ.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 4.3 MB
ENCFF509UUW.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 78.9 MB
ENCFF509ZVE.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 91.8 MB
ENCFF554RTD.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 84.9 MB
ENCFF572QKU.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 92.3 MB
ENCFF583XZV.bam bam (alignments); assembly: hg19; genome annotation: V19 2.9 GB
ENCFF590FCI.bam bam (alignments); assembly: hg19; genome annotation: V19 3.8 GB
ENCFF599ZZU.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 76.8 MB
ENCFF604VFZ.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 79.4 MB
ENCFF608GIS.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 79.1 MB
ENCFF616FIR.fastq fastq (reads) 2.8 GB
ENCFF616PGP.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 73.1 MB
ENCFF617WHI.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 91.9 MB
ENCFF649AZS.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 74.8 MB
ENCFF653UFQ.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 89.5 MB
ENCFF662MCX.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 87.1 MB
ENCFF690SLX.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 84.0 MB
ENCFF697ENQ.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 77.9 MB
ENCFF707QVO.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 104.8 MB
ENCFF715GXP.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 69.4 MB
ENCFF716WGZ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 87.3 MB
ENCFF743MKV.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 91.5 MB
ENCFF751UAO.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 102.0 MB
ENCFF755NOG.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 89.9 MB
ENCFF767DNY.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 4.4 MB
ENCFF794DOH.bam bam (alignments); assembly: hg19; genome annotation: V19 3.8 GB
ENCFF804MLO.bam bam (alignments); assembly: GRCh38; genome annotation: V29 3.6 GB
ENCFF808HXX.fastq fastq (reads) 2.0 GB
ENCFF811ZML.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 96.3 MB
ENCFF813DET.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.5 MB
ENCFF817WSL.fastq fastq (reads) 2.1 GB
ENCFF824ENR.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 75.5 MB
ENCFF829KRO.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 93.2 MB
ENCFF834CCV.bam bam (alignments); assembly: GRCh38; genome annotation: V29 4.8 GB
ENCFF845EQR.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 6.2 GB
ENCFF852HVM.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 76.7 MB
ENCFF874CVU.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 6.2 GB
ENCFF915OXW.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 5.4 GB
ENCFF922XLL.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF930XGQ.bam bam (alignments); assembly: GRCh38; genome annotation: V24 2.9 GB
ENCFF933LIH.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 104.8 MB
ENCFF943OLN.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 103.4 MB
ENCFF958JPF.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 4.6 GB
ENCFF960RNJ.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 103.5 MB
ENCFF966QZD.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 3.7 MB
ENCFF975YJK.fastq fastq (reads) 2.8 GB
ENCFF991KTD.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 7.1 GB
ENCSR881AMH ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) mock pulldown control experiment of FUS

1 data file
FileTypeSize
ENCFF441MLG.fastq fastq (reads) 271.8 MB
ENCSR684HTV ENCSR · via encode_api

shRNA knockdown against UCHL5 in HepG2 cells followed by RNA-seq. (UCHL5_BGHLV17)

Homo sapiens

92 data files
FileTypeSize
ENCFF002PLM.bam bam (transcriptome alignments) 2.4 GB
ENCFF020JJG.bigWig bigWig (minus strand signal of unique reads) 48.2 MB
ENCFF021HTI.bigWig bigWig (minus strand signal of all reads) 48.7 MB
ENCFF023GQA.bam bam (transcriptome alignments) 2.4 GB
ENCFF037KGI.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF043BSV.bam bam (alignments) 2.2 GB
ENCFF067CGJ.bam bam (alignments) 1.8 GB
ENCFF067JGF.bigWig bigWig (minus strand signal of unique reads) 45.7 MB
ENCFF072BEG.bam bam (alignments) 2.2 GB
ENCFF078FNT.bam bam (alignments) 2.2 GB
ENCFF100QRC.bigWig bigWig (minus strand signal of all reads) 48.6 MB
ENCFF101NEU.tsv tsv (gene quantifications) 9.4 MB
ENCFF138RYX.bam bam (transcriptome alignments) 2.4 GB
ENCFF142TGG.tsv tsv (transcript quantifications) 29.7 MB
ENCFF150MJI.tsv tsv (gene quantifications) 9.4 MB
ENCFF178TZV.bam bam (alignments) 2.2 GB
ENCFF178VOL.bigWig bigWig (minus strand signal of unique reads) 45.8 MB
ENCFF186CLE.bigWig bigWig (plus strand signal of unique reads) 49.4 MB
ENCFF192QNV.tsv tsv (differential expression quantifications) 5.5 MB
ENCFF202ZAV.bigWig bigWig (minus strand signal of unique reads) 48.9 MB
ENCFF211LWP.tsv tsv (gene quantifications) 10.3 MB
ENCFF213ATE.bigWig bigWig (minus strand signal of unique reads) 42.4 MB
ENCFF221PLZ.bigWig bigWig (minus strand signal of unique reads) 48.1 MB
ENCFF232LKE.tsv tsv (transcript quantifications) 25.2 MB
ENCFF251RFF.bigWig bigWig (minus strand signal of unique reads) 42.8 MB
ENCFF252BQU.bigWig bigWig (plus strand signal of all reads) 55.1 MB
ENCFF253RJM.bigWig bigWig (minus strand signal of unique reads) 47.6 MB
ENCFF282TQR.tsv tsv (gene quantifications) 10.4 MB
ENCFF293IQU.bam bam (transcriptome alignments) 2.4 GB
ENCFF297SRJ.bigWig bigWig (minus strand signal of all reads) 54.3 MB
ENCFF300CDS.bam bam (alignments) 2.1 GB
ENCFF305XCT.bigWig bigWig (plus strand signal of unique reads) 46.0 MB
ENCFF314DWK.tsv tsv (transcript quantifications) 25.2 MB
ENCFF333AHS.tsv tsv (gene quantifications) 9.1 MB
ENCFF335WBI.bigWig bigWig (plus strand signal of all reads) 46.9 MB
ENCFF336AGK.tsv tsv (differential expression quantifications) 1.8 MB
ENCFF350IUC.bigWig bigWig (plus strand signal of all reads) 54.4 MB
ENCFF371RCK.bigWig bigWig (plus strand signal of all reads) 55.4 MB
ENCFF381FAQ.bigWig bigWig (plus strand signal of all reads) 47.1 MB
ENCFF385SKD.tsv tsv (transcript quantifications) 24.8 MB
ENCFF388XNW.tsv tsv (transcript quantifications) 27.2 MB
ENCFF393BJJ.tsv tsv (transcript quantifications) 27.2 MB
ENCFF394MVP.bigWig bigWig (minus strand signal of unique reads) 48.8 MB
ENCFF402YUX.bigWig bigWig (plus strand signal of all reads) 49.4 MB
ENCFF414PON.bigWig bigWig (minus strand signal of all reads) 49.1 MB
ENCFF429JMX.bigWig bigWig (plus strand signal of unique reads) 43.4 MB
ENCFF432SEN.bam bam (alignments) 2.1 GB
ENCFF434HSQ.bigWig bigWig (minus strand signal of all reads) 46.0 MB
ENCFF439LAG.bigWig bigWig (plus strand signal of all reads) 55.0 MB
ENCFF447JFQ.bam bam (alignments) 1.8 GB
ENCFF451HCB.bam bam (alignments) 1.8 GB
ENCFF462ODU.bigWig bigWig (minus strand signal of all reads) 54.4 MB
ENCFF476AUD.bigWig bigWig (plus strand signal of unique reads) 49.9 MB
ENCFF509OED.bam bam (alignments) 1.8 GB
ENCFF520CYY.bigWig bigWig (plus strand signal of unique reads) 43.8 MB
ENCFF531GHR.tsv tsv (differential expression quantifications) 4.2 MB
ENCFF535KEU.bigWig bigWig (plus strand signal of unique reads) 50.0 MB
ENCFF555UAS.bam bam (transcriptome alignments) 2.7 GB
ENCFF558UKC.tar tar (differential splicing quantifications) 3.3 MB
ENCFF568WFM.bam bam (transcriptome alignments) 2.7 GB
ENCFF571EAU.bigWig bigWig (plus strand signal of all reads) 49.5 MB
ENCFF601APB.bam bam (alignments) 1.8 GB
ENCFF608FNT.bigWig bigWig (plus strand signal of all reads) 55.1 MB
ENCFF623CCH.tar tar (differential splicing quantifications) 2.6 MB
ENCFF652ZDY.fastq fastq (reads) 1.1 GB
ENCFF672CCN.bigWig bigWig (plus strand signal of all reads) 49.9 MB
ENCFF702EBH.bigWig bigWig (minus strand signal of all reads) 53.8 MB
ENCFF708UHS.bigWig bigWig (minus strand signal of all reads) 54.5 MB
ENCFF709WWG.bigWig bigWig (plus strand signal of unique reads) 49.9 MB
ENCFF711HUA.bigWig bigWig (plus strand signal of unique reads) 46.8 MB
ENCFF723LLW.fastq fastq (reads) 1.1 GB
ENCFF759JLV.tar tar (differential splicing quantifications) 13.1 MB
ENCFF766IGS.fastq fastq (reads) 1.1 GB
ENCFF768TAS.bigWig bigWig (plus strand signal of all reads) 49.0 MB
ENCFF773GDJ.tsv tsv (transcript quantifications) 29.7 MB
ENCFF775JTQ.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF775ODS.bigWig bigWig (minus strand signal of unique reads) 45.1 MB
ENCFF801IWF.bigWig bigWig (minus strand signal of all reads) 46.3 MB
ENCFF810XYT.tsv tsv (gene quantifications) 9.1 MB
ENCFF822BZY.bigWig bigWig (plus strand signal of unique reads) 49.4 MB
ENCFF855PJF.bigWig bigWig (plus strand signal of unique reads) 48.8 MB
ENCFF867AOX.bigWig bigWig (plus strand signal of unique reads) 46.2 MB
ENCFF882SFI.bigWig bigWig (minus strand signal of all reads) 54.1 MB
ENCFF913GGI.bigWig bigWig (minus strand signal of unique reads) 45.0 MB
ENCFF921HHC.tsv tsv (transcript quantifications) 24.8 MB
ENCFF933PPU.bigWig bigWig (minus strand signal of all reads) 49.1 MB
ENCFF936JJQ.bigWig bigWig (plus strand signal of all reads) 55.4 MB
ENCFF941IHU.bigWig bigWig (plus strand signal of unique reads) 46.7 MB
ENCFF941OFR.bigWig bigWig (minus strand signal of unique reads) 48.8 MB
ENCFF959JFR.bigWig bigWig (minus strand signal of all reads) 54.1 MB
ENCFF986VVL.fastq fastq (reads) 1.2 GB
ENCFF988GDI.bam bam (alignments) 1.8 GB
ENCSR680OJB ENCSR · via encode_api

RNA-seq on K562 cells treated with a CRISPR gRNA against SYNCRIP. (SYNCRIP-BGKcLV06)

Homo sapiens

92 data files
FileTypeSize
ENCFF005EHH.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.7 MB
ENCFF017PMX.bam bam (alignments); assembly: hg19; genome annotation: V19 2.9 GB
ENCFF030HQJ.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 62.2 MB
ENCFF032KEY.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.9 MB
ENCFF051LWX.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 63.2 MB
ENCFF068HCG.bam bam (alignments); assembly: GRCh38; genome annotation: V24 2.7 GB
ENCFF077KDL.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 67.8 MB
ENCFF084CIY.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 66.2 MB
ENCFF105YIZ.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 4.3 MB
ENCFF114DBL.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 59.1 MB
ENCFF145GXF.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 64.8 MB
ENCFF151JVH.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 70.8 MB
ENCFF161LCD.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF199GCY.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 73.8 MB
ENCFF212MEX.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF222IFE.bam bam (alignments); assembly: GRCh38; genome annotation: V29 2.9 GB
ENCFF230NLD.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 62.7 MB
ENCFF253JSG.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 63.1 MB
ENCFF253QDG.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.5 MB
ENCFF266YRH.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF279VRU.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 71.2 MB
ENCFF283RKD.fastq fastq (reads) 2.1 GB
ENCFF285OYX.bam bam (alignments); assembly: hg19; genome annotation: V19 2.3 GB
ENCFF293DIT.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 63.7 MB
ENCFF298SRF.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 73.7 MB
ENCFF299OYE.fastq fastq (reads) 1.7 GB
ENCFF300ZEH.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 62.9 MB
ENCFF319GSL.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 74.5 MB
ENCFF319IIX.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 4.6 GB
ENCFF328CWI.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 65.0 MB
ENCFF341THR.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 74.5 MB
ENCFF363FZP.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.9 MB
ENCFF377OAE.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 4.0 GB
ENCFF390LQU.fastq fastq (reads) 1.7 GB
ENCFF406CBN.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 60.5 MB
ENCFF411EVP.bam bam (alignments); assembly: hg19; genome annotation: V19 2.7 GB
ENCFF439GUF.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.3 MB
ENCFF444MLS.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 66.1 MB
ENCFF449GBY.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 66.7 MB
ENCFF460YSD.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 73.9 MB
ENCFF462UHW.bam bam (alignments); assembly: hg19; genome annotation: V19 2.7 GB
ENCFF474USX.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 64.1 MB
ENCFF475HDI.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 5.7 MB
ENCFF488AZJ.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 63.4 MB
ENCFF495RJX.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 62.1 MB
ENCFF499MNK.bam bam (alignments); assembly: hg19; genome annotation: V19 3.4 GB
ENCFF517AQQ.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 68.8 MB
ENCFF519EEN.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 73.0 MB
ENCFF523ZYB.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 4.3 MB
ENCFF537COK.bam bam (alignments); assembly: GRCh38; genome annotation: V24 2.9 GB
ENCFF546POT.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF547FZJ.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 64.9 MB
ENCFF548CUB.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 65.4 MB
ENCFF558BLQ.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF585EAM.bam bam (alignments); assembly: GRCh38; genome annotation: V24 2.3 GB
ENCFF589DPG.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF606TKN.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 71.6 MB
ENCFF608PGD.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 59.1 MB
ENCFF633XPY.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 4.6 GB
ENCFF640SYR.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.5 MB
ENCFF641AID.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 64.2 MB
ENCFF648OPR.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 65.4 MB
ENCFF652ULJ.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 3.5 MB
ENCFF657NCF.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 61.8 MB
ENCFF662IZF.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 4.7 GB
ENCFF664RKO.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF670UPS.bam bam (alignments); assembly: hg19; genome annotation: V19 2.3 GB
ENCFF684RHF.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 14.6 MB
ENCFF691YWR.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.2 MB
ENCFF693BVG.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 62.1 MB
ENCFF700EXF.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 60.1 MB
ENCFF701ERC.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 58.1 MB
ENCFF711GJC.bam bam (alignments); assembly: GRCh38; genome annotation: V29 3.4 GB
ENCFF714WKN.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 61.0 MB
ENCFF729ELH.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.4 MB
ENCFF735END.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 65.8 MB
ENCFF777OQT.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 56.7 MB
ENCFF822OPP.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.4 GB
ENCFF827JCV.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 66.1 MB
ENCFF844UWY.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 66.4 MB
ENCFF852GMH.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 63.1 MB
ENCFF855APN.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 4.0 GB
ENCFF889NYK.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 59.0 MB
ENCFF893PDL.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF895CDU.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.9 MB
ENCFF903BEE.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 5.4 GB
ENCFF947LNB.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 71.9 MB
ENCFF949PQV.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 71.2 MB
ENCFF958QZU.fastq fastq (reads) 2.0 GB
ENCFF965YJL.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 60.6 MB
ENCFF992RHH.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 64.9 MB
ENCFF998TLW.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 71.9 MB
ENCSR331BKR ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) pulldown experiment against RBM4

13 data files
FileTypeSize
ENCFF108CRY.tsv tsv (enrichment) 688.0 KB
ENCFF290VRZ.fastq fastq (reads) 448.8 MB
ENCFF290ZZD.tsv tsv (library fraction) 1.1 MB
ENCFF395DTW.tsv tsv (library fraction) 265.4 KB
ENCFF399HBQ.tsv tsv (library fraction) 63.8 KB
ENCFF401FZE.fastq fastq (reads) 375.6 MB
ENCFF527ZSP.fastq fastq (reads) 368.1 MB
ENCFF620EXI.tsv tsv (enrichment) 41.0 KB
ENCFF662YDT.fastq fastq (reads) 389.7 MB
ENCFF667LUD.tsv tsv (enrichment) 10.0 KB
ENCFF870FLG.tsv tsv (library fraction) 15.2 KB
ENCFF891RFM.tsv tsv (enrichment) 168.0 KB
ENCFF940CRO.fastq fastq (reads) 412.4 MB
ENCSR584UYK ENCSR · via encode_api

Control shRNA against no target in HepG2 cells followed by RNA-seq. (NT-BGHLV37-B)

Homo sapiens

84 data files
FileTypeSize
ENCFF021DKR.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF028JDE.fastq fastq (reads) 1.9 GB
ENCFF046YCH.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 65.5 MB
ENCFF092SBM.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 68.6 MB
ENCFF108MIF.bam bam (alignments); assembly: hg19; genome annotation: V19 3.0 GB
ENCFF134WBF.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 4.3 GB
ENCFF137DSA.bam bam (alignments); assembly: GRCh38; genome annotation: V29 3.8 GB
ENCFF138URG.bam bam (alignments); assembly: hg19; genome annotation: V19 3.7 GB
ENCFF142HKV.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 64.6 MB
ENCFF158CSI.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF165RPH.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 70.6 MB
ENCFF170JPI.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.8 GB
ENCFF173NXL.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 65.4 MB
ENCFF181KAV.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 5.0 GB
ENCFF181MKV.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 61.8 MB
ENCFF199AEB.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 66.0 MB
ENCFF205QCK.fastq fastq (reads) 2.2 GB
ENCFF217OEO.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF226AJQ.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 65.4 MB
ENCFF226OXH.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 63.7 MB
ENCFF227WHT.bam bam (alignments); assembly: hg19; genome annotation: V19 2.6 GB
ENCFF257XKR.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.3 MB
ENCFF258AKK.fastq fastq (reads) 1.9 GB
ENCFF267LNZ.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 69.8 MB
ENCFF276JFZ.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 70.9 MB
ENCFF288KTB.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 71.1 MB
ENCFF299EAH.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 72.4 MB
ENCFF338SWH.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF348TYX.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 70.1 MB
ENCFF360UHZ.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 71.9 MB
ENCFF362OVH.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF364JAM.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 5.7 GB
ENCFF377TXZ.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.3 GB
ENCFF383DRH.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF388PGS.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 71.1 MB
ENCFF391RND.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 57.9 MB
ENCFF395AYQ.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 78.1 MB
ENCFF398NAQ.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.5 MB
ENCFF404THH.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 4.3 GB
ENCFF407NWU.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 5.0 GB
ENCFF423XXT.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF431DVO.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 79.4 MB
ENCFF447IAW.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 73.9 MB
ENCFF477VCI.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 63.6 MB
ENCFF492PWC.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 71.0 MB
ENCFF502YGT.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF510OUS.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 70.0 MB
ENCFF522GSG.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 63.5 MB
ENCFF522QON.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 64.7 MB
ENCFF526MAW.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 66.5 MB
ENCFF536UOO.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 79.4 MB
ENCFF556ORR.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 78.0 MB
ENCFF567IRP.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 71.9 MB
ENCFF581GDV.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 69.8 MB
ENCFF604GEU.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 63.0 MB
ENCFF605HWK.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 61.5 MB
ENCFF624URS.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 64.8 MB
ENCFF662HPT.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 72.5 MB
ENCFF703NOG.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 72.5 MB
ENCFF709MHQ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 62.3 MB
ENCFF721LAQ.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF731APP.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF742PYW.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 78.3 MB
ENCFF743ODC.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.1 GB
ENCFF752TEZ.bam bam (alignments); assembly: hg19; genome annotation: V19 3.0 GB
ENCFF767PFV.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 79.3 MB
ENCFF774UZN.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 68.4 MB
ENCFF794MFN.bam bam (alignments); assembly: GRCh38; genome annotation: V29 3.3 GB
ENCFF803VFC.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 5.0 GB
ENCFF817MZD.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 63.7 MB
ENCFF852IIZ.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 72.2 MB
ENCFF865HKO.bam bam (alignments); assembly: GRCh38; genome annotation: V24 2.7 GB
ENCFF870TVN.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 62.7 MB
ENCFF916GJQ.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 72.4 MB
ENCFF918QPB.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 68.2 MB
ENCFF928NKJ.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 60.5 MB
ENCFF932KDS.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 60.1 MB
ENCFF935GCD.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF939VVK.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.3 MB
ENCFF946XBA.bam bam (alignments); assembly: hg19; genome annotation: V19 2.6 GB
ENCFF951MMW.bam bam (alignments); assembly: hg19; genome annotation: V19 3.2 GB
ENCFF987HNY.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 66.5 MB
ENCFF988NMV.fastq fastq (reads) 2.2 GB
ENCFF998OFO.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 59.6 MB
ENCSR238CLX ENCSR · via encode_api

eCLIP experiment on K562 against GEMIN5

Homo sapiens

34 data files
FileTypeSize
ENCFF016THS.bigBed bigBed (peaks) 2.6 MB
ENCFF038WBZ.bigBed bigBed (peaks) 2.0 MB
ENCFF050VVI.bed bed (peaks) 59.2 KB
ENCFF072KEM.bam bam (alignments) 161.6 MB
ENCFF083ZYT.bed bed (peaks) 938.7 KB
ENCFF091VCD.bam bam (alignments) 250.6 MB
ENCFF125NXB.bed bed (peaks) 172.6 KB
ENCFF141DSU.bigWig bigWig (minus strand signal of unique reads) 13.7 MB
ENCFF148IOT.bigWig bigWig (minus strand signal of unique reads) 10.3 MB
ENCFF151VUB.bed bed (peaks) 894.9 KB
ENCFF161RAP.bed bed (peaks) 206.0 KB
ENCFF175TMY.fastq fastq (reads) 463.0 MB
ENCFF182RWR.bed bed (peaks) 1.3 MB
ENCFF185BYE.bed bed (peaks) 587.3 KB
ENCFF185KMM.bed bed (peaks) 494.3 KB
ENCFF258KDH.bigWig bigWig (plus strand signal of unique reads) 10.8 MB
ENCFF260XAL.bigWig bigWig (plus strand signal of unique reads) 14.8 MB
ENCFF287BQY.bigWig bigWig (plus strand signal of unique reads) 14.4 MB
ENCFF384BDA.fastq fastq (reads) 452.6 MB
ENCFF391ZFR.bigBed bigBed (peaks) 1.9 MB
ENCFF410UTY.bam bam (alignments) 172.3 MB
ENCFF447WDR.fastq fastq (reads) 549.8 MB
ENCFF456SGZ.bigWig bigWig (minus strand signal of unique reads) 14.0 MB
ENCFF533RZJ.bigBed bigBed (peaks) 2.7 MB
ENCFF553VND.bigBed bigBed (peaks) 433.6 KB
ENCFF588HPG.bigBed bigBed (peaks) 1.3 MB
ENCFF594WHT.bed bed (peaks) 1.3 MB
ENCFF620MFE.bam bam (alignments) 257.6 MB
ENCFF649URS.bigBed bigBed (peaks) 961.1 KB
ENCFF791QDL.bigWig bigWig (minus strand signal of unique reads) 7.5 MB
ENCFF875QBF.bed bed (peaks) 58.8 KB
ENCFF921PTG.fastq fastq (reads) 575.0 MB
ENCFF992XQV.bigWig bigWig (plus strand signal of unique reads) 10.3 MB
ENCFF996BAB.bigBed bigBed (peaks) 555.7 KB
ENCSR457WBK ENCSR · via encode_api

RNA-seq on HepG2 cells treated with an shRNA knockdown against NUP35. (NUP35_BGHLV27)

Homo sapiens

92 data files
FileTypeSize
ENCFF044PPY.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 112.3 MB
ENCFF050XKU.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.4 MB
ENCFF066VPP.bam bam (alignments); assembly: hg19; genome annotation: V19 10.8 GB
ENCFF077DQZ.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 95.2 MB
ENCFF083AKD.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.5 MB
ENCFF104ZGJ.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.4 MB
ENCFF129GOG.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF147ZVM.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 72.1 MB
ENCFF175ALF.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 100.5 MB
ENCFF181FRM.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 69.8 MB
ENCFF190HYE.fastq fastq (reads) 5.8 GB
ENCFF199GCA.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 75.5 MB
ENCFF199ILN.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 95.8 MB
ENCFF201WSU.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 76.9 MB
ENCFF210FWS.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.5 MB
ENCFF212XGG.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 76.5 MB
ENCFF214UWC.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 78.9 MB
ENCFF222TBT.bam bam (alignments); assembly: hg19; genome annotation: V19 9.1 GB
ENCFF239JXL.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 112.3 MB
ENCFF247YNX.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 5.6 MB
ENCFF254HPW.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 96.0 MB
ENCFF258RRB.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 84.4 MB
ENCFF261DTU.bam bam (alignments); assembly: hg19; genome annotation: V19 8.2 GB
ENCFF267NSU.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 77.7 MB
ENCFF280HQF.fastq fastq (reads) 4.4 GB
ENCFF303VHB.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF315KTT.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 98.5 MB
ENCFF326PGC.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 89.3 MB
ENCFF346TXF.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 84.7 MB
ENCFF352IEN.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.9 MB
ENCFF358DLP.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 84.6 MB
ENCFF389YRE.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 79.8 MB
ENCFF397EDB.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 96.0 MB
ENCFF400YCO.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 85.5 MB
ENCFF439YUE.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 85.8 MB
ENCFF449BVI.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 91.7 MB
ENCFF463BWE.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 85.5 MB
ENCFF463MPC.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 4.2 MB
ENCFF464SYH.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 25.0 MB
ENCFF481JBH.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 92.8 MB
ENCFF485QYR.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 113.5 MB
ENCFF487HDY.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 112.3 MB
ENCFF493FUL.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF498IGB.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.5 MB
ENCFF505BDU.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 13.0 GB
ENCFF511CYH.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.0 MB
ENCFF515IIT.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 84.4 MB
ENCFF537EKO.bam bam (alignments); assembly: hg19; genome annotation: V19 6.9 GB
ENCFF554GDY.bam bam (alignments); assembly: GRCh38; genome annotation: V29 8.4 GB
ENCFF560QDQ.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 95.1 MB
ENCFF575HWB.fastq fastq (reads) 4.5 GB
ENCFF591VNS.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 16.3 MB
ENCFF594PKW.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 98.5 MB
ENCFF598FFY.bam bam (alignments); assembly: GRCh38; genome annotation: V24 7.0 GB
ENCFF620FWJ.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 8.7 GB
ENCFF625PRM.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 74.1 MB
ENCFF625WGQ.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 95.2 MB
ENCFF628JAP.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 98.5 MB
ENCFF640CET.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 90.6 MB
ENCFF651XXR.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.9 MB
ENCFF662DXO.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 111.3 MB
ENCFF697NPN.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 71.3 MB
ENCFF723EJB.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 84.0 MB
ENCFF729ZEQ.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 90.6 MB
ENCFF735DQE.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 11.6 GB
ENCFF746QLL.bam bam (alignments); assembly: GRCh38; genome annotation: V24 8.4 GB
ENCFF747SYF.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 73.4 MB
ENCFF771LTT.bam bam (alignments); assembly: GRCh38; genome annotation: V29 11.1 GB
ENCFF774UUT.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 87.3 MB
ENCFF778ORK.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 91.5 MB
ENCFF779KWR.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.4 MB
ENCFF784YYK.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 86.1 MB
ENCFF785ISQ.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 86.4 MB
ENCFF799NDX.fastq fastq (reads) 5.9 GB
ENCFF836SIX.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 9.8 GB
ENCFF837VFB.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 82.6 MB
ENCFF840PKH.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 11.6 GB
ENCFF881QUW.bam bam (alignments); assembly: GRCh38; genome annotation: V24 11.1 GB
ENCFF883OMZ.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF893IHQ.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 100.5 MB
ENCFF913TVD.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 113.5 MB
ENCFF917ERG.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.9 MB
ENCFF922EIO.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 72.7 MB
ENCFF926KAE.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 8.7 GB
ENCFF928OET.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 25.0 MB
ENCFF929PEU.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 3.3 MB
ENCFF930HSH.bam bam (alignments); assembly: hg19; genome annotation: V19 6.9 GB
ENCFF931LIF.bam bam (alignments); assembly: GRCh38; genome annotation: V24 9.2 GB
ENCFF941QUJ.bam bam (alignments); assembly: hg19; genome annotation: V19 9.1 GB
ENCFF977SGZ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 100.5 MB
ENCFF992EJK.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.7 MB
ENCFF999TPX.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 3.8 MB
ENCSR116QBU ENCSR · via encode_api

RNA-seq on HepG2 cells treated with an shRNA knockdown against FIP1L1. (FIP1L1_BGHLV30)

Homo sapiens

92 data files
FileTypeSize
ENCFF037PPP.tsv tsv (transcript quantifications) 30.0 MB
ENCFF037UWR.fastq fastq (reads) 3.8 GB
ENCFF054VPJ.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF058OZL.bam bam (transcriptome alignments) 20.1 GB
ENCFF100NEV.bigWig bigWig (plus strand signal of unique reads) 132.2 MB
ENCFF106ACL.tar tar (differential splicing quantifications) 3.9 MB
ENCFF111COF.bigWig bigWig (minus strand signal of unique reads) 127.0 MB
ENCFF112SDG.bigWig bigWig (plus strand signal of unique reads) 79.2 MB
ENCFF113YJS.bigWig bigWig (plus strand signal of all reads) 131.2 MB
ENCFF120DGZ.bam bam (alignments) 12.8 GB
ENCFF122RTY.bigWig bigWig (minus strand signal of all reads) 126.0 MB
ENCFF127EMC.bam bam (alignments) 6.6 GB
ENCFF143ADS.bigWig bigWig (minus strand signal of all reads) 82.7 MB
ENCFF186XTZ.bigWig bigWig (plus strand signal of unique reads) 86.1 MB
ENCFF211OKO.tsv tsv (gene quantifications) 9.2 MB
ENCFF214CYZ.bigWig bigWig (minus strand signal of unique reads) 118.0 MB
ENCFF234SAN.bigWig bigWig (minus strand signal of unique reads) 116.5 MB
ENCFF238XNM.tsv tsv (transcript quantifications) 27.4 MB
ENCFF253SZA.bam bam (alignments) 14.9 GB
ENCFF262NNE.bam bam (transcriptome alignments) 17.9 GB
ENCFF279VHS.bigWig bigWig (plus strand signal of unique reads) 86.1 MB
ENCFF290PBY.bigWig bigWig (minus strand signal of unique reads) 76.1 MB
ENCFF295LSJ.bigWig bigWig (minus strand signal of all reads) 81.3 MB
ENCFF299OCG.bigWig bigWig (minus strand signal of unique reads) 83.3 MB
ENCFF321YGP.bigWig bigWig (minus strand signal of unique reads) 116.8 MB
ENCFF330ZUR.bigWig bigWig (plus strand signal of all reads) 129.7 MB
ENCFF347OEK.bigWig bigWig (minus strand signal of unique reads) 76.6 MB
ENCFF354LSL.bigWig bigWig (minus strand signal of unique reads) 74.1 MB
ENCFF362POO.bigWig bigWig (minus strand signal of all reads) 93.3 MB
ENCFF369UWD.bam bam (alignments) 12.5 GB
ENCFF371SEP.bigWig bigWig (minus strand signal of all reads) 124.0 MB
ENCFF380YML.bigWig bigWig (minus strand signal of all reads) 142.9 MB
ENCFF409CIJ.bigWig bigWig (plus strand signal of unique reads) 122.3 MB
ENCFF434DIJ.bigWig bigWig (minus strand signal of unique reads) 83.4 MB
ENCFF435KEY.bigWig bigWig (plus strand signal of all reads) 145.4 MB
ENCFF465MAD.bigWig bigWig (minus strand signal of unique reads) 127.6 MB
ENCFF481YKT.bigWig bigWig (plus strand signal of all reads) 95.5 MB
ENCFF492JCF.bigWig bigWig (plus strand signal of unique reads) 131.5 MB
ENCFF492UQI.tar tar (differential splicing quantifications) 4.7 MB
ENCFF508QTV.tsv tsv (gene quantifications) 10.4 MB
ENCFF509GXN.bigWig bigWig (minus strand signal of all reads) 127.5 MB
ENCFF534PRU.fastq fastq (reads) 8.6 GB
ENCFF546TSA.bam bam (alignments) 5.6 GB
ENCFF551ACF.bam bam (alignments) 12.5 GB
ENCFF581EHK.tsv tsv (differential expression quantifications) 3.0 MB
ENCFF596HPB.bam bam (alignments) 15.4 GB
ENCFF639CDB.bigWig bigWig (minus strand signal of all reads) 142.9 MB
ENCFF639OJW.bigWig bigWig (minus strand signal of unique reads) 126.7 MB
ENCFF646BOH.bam bam (alignments) 6.8 GB
ENCFF663CBR.tsv tsv (differential expression quantifications) 1.8 MB
ENCFF664HDK.bigWig bigWig (plus strand signal of all reads) 95.5 MB
ENCFF667PNW.fastq fastq (reads) 3.7 GB
ENCFF673RZF.bigWig bigWig (plus strand signal of unique reads) 121.1 MB
ENCFF677GXG.bigWig bigWig (plus strand signal of all reads) 83.4 MB
ENCFF688MJL.bam bam (transcriptome alignments) 8.7 GB
ENCFF697LMU.tsv tsv (gene quantifications) 9.5 MB
ENCFF700VBZ.bigWig bigWig (plus strand signal of all reads) 82.6 MB
ENCFF721UBI.tsv tsv (transcript quantifications) 25.0 MB
ENCFF723GHZ.bigWig bigWig (plus strand signal of unique reads) 86.2 MB
ENCFF724DFP.bam bam (alignments) 5.6 GB
ENCFF730SRO.bam bam (alignments) 15.4 GB
ENCFF748OWH.bigWig bigWig (plus strand signal of all reads) 93.8 MB
ENCFF759UGJ.bigWig bigWig (minus strand signal of all reads) 80.5 MB
ENCFF761AUG.tsv tsv (gene quantifications) 10.5 MB
ENCFF788FHE.bigWig bigWig (minus strand signal of all reads) 93.3 MB
ENCFF807KFU.bigWig bigWig (minus strand signal of all reads) 141.9 MB
ENCFF809ISI.tsv tsv (transcript quantifications) 25.4 MB
ENCFF810VAW.bigWig bigWig (minus strand signal of unique reads) 83.3 MB
ENCFF821IYR.tsv tsv (differential expression quantifications) 2.0 MB
ENCFF826NBM.fastq fastq (reads) 8.5 GB
ENCFF826PXX.bam bam (transcriptome alignments) 17.8 GB
ENCFF850TBP.bigWig bigWig (plus strand signal of all reads) 127.2 MB
ENCFF870KIL.bam bam (transcriptome alignments) 7.8 GB
ENCFF873TSP.bigWig bigWig (plus strand signal of all reads) 85.0 MB
ENCFF876ROU.tsv tsv (transcript quantifications) 25.0 MB
ENCFF890RRJ.bigWig bigWig (plus strand signal of all reads) 146.4 MB
ENCFF908LRX.bigWig bigWig (plus strand signal of unique reads) 131.2 MB
ENCFF909OZO.bigWig bigWig (minus strand signal of all reads) 91.8 MB
ENCFF913MFF.tsv tsv (transcript quantifications) 27.6 MB
ENCFF915DAL.tar tar (differential splicing quantifications) 16.1 MB
ENCFF924CHL.tsv tsv (differential expression quantifications) 4.4 MB
ENCFF927IYA.bigWig bigWig (plus strand signal of unique reads) 120.5 MB
ENCFF938BDT.bigWig bigWig (plus strand signal of unique reads) 78.6 MB
ENCFF944ZIT.bam bam (alignments) 5.7 GB
ENCFF945HAL.bam bam (alignments) 6.8 GB
ENCFF954OAX.tsv tsv (transcript quantifications) 29.9 MB
ENCFF963NPH.tsv tsv (gene quantifications) 9.1 MB
ENCFF964GZK.bigWig bigWig (plus strand signal of unique reads) 76.7 MB
ENCFF977LUS.bam bam (transcriptome alignments) 7.7 GB
ENCFF989BNC.bigWig bigWig (plus strand signal of all reads) 146.4 MB
ENCFF997QYO.tsv tsv (transcript quantifications) 25.4 MB
ENCFF999IXK.tsv tsv (gene quantifications) 9.5 MB
ENCSR784FTX ENCSR · via encode_api

RNA-seq on HepG2 cells treated with an shRNA knockdown against KHDRBS1. (KHDRBS1-BGHLV22)

Homo sapiens

92 data files
FileTypeSize
ENCFF012ESP.bigWig bigWig (minus strand signal of unique reads) 68.0 MB
ENCFF018DUJ.tsv tsv (transcript quantifications) 29.8 MB
ENCFF025NDO.bam bam (alignments) 4.2 GB
ENCFF029HTB.bigWig bigWig (minus strand signal of unique reads) 73.9 MB
ENCFF029MOA.bigWig bigWig (minus strand signal of all reads) 78.7 MB
ENCFF031DPQ.bigWig bigWig (minus strand signal of unique reads) 70.0 MB
ENCFF039GJG.bigWig bigWig (minus strand signal of unique reads) 73.4 MB
ENCFF041TNK.tsv tsv (transcript quantifications) 25.3 MB
ENCFF047WUS.bigWig bigWig (plus strand signal of unique reads) 75.5 MB
ENCFF051TFU.bigWig bigWig (minus strand signal of unique reads) 73.1 MB
ENCFF056XCK.bigWig bigWig (plus strand signal of unique reads) 78.6 MB
ENCFF064HWH.bam bam (transcriptome alignments) 6.4 GB
ENCFF070GUU.bigWig bigWig (minus strand signal of unique reads) 73.7 MB
ENCFF078RXP.bigWig bigWig (minus strand signal of unique reads) 76.8 MB
ENCFF079LYW.bam bam (alignments) 4.7 GB
ENCFF084DTF.bigWig bigWig (plus strand signal of unique reads) 78.8 MB
ENCFF089TOB.tsv tsv (transcript quantifications) 29.8 MB
ENCFF108LKK.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF112PZJ.bam bam (transcriptome alignments) 5.7 GB
ENCFF133JBL.bigWig bigWig (minus strand signal of unique reads) 77.1 MB
ENCFF139YZX.tsv tsv (transcript quantifications) 27.3 MB
ENCFF153IGG.bigWig bigWig (minus strand signal of all reads) 74.0 MB
ENCFF153SVL.bigWig bigWig (plus strand signal of all reads) 79.8 MB
ENCFF161UUY.tsv tsv (differential expression quantifications) 5.7 MB
ENCFF166TOA.bam bam (transcriptome alignments) 5.7 GB
ENCFF177CCV.tar tar (differential splicing quantifications) 3.8 MB
ENCFF197VPA.bigWig bigWig (minus strand signal of all reads) 77.1 MB
ENCFF198OWL.bigWig bigWig (minus strand signal of all reads) 81.6 MB
ENCFF220LKK.bam bam (alignments) 4.1 GB
ENCFF221TQF.bigWig bigWig (plus strand signal of unique reads) 78.8 MB
ENCFF227TTE.bam bam (alignments) 4.1 GB
ENCFF233CSC.bigWig bigWig (plus strand signal of all reads) 83.5 MB
ENCFF235LRF.bam bam (transcriptome alignments) 6.7 GB
ENCFF288BDF.bigWig bigWig (plus strand signal of all reads) 83.5 MB
ENCFF304CQT.bigWig bigWig (plus strand signal of all reads) 87.2 MB
ENCFF309OAV.bigWig bigWig (plus strand signal of all reads) 82.7 MB
ENCFF311ZVB.bigWig bigWig (plus strand signal of unique reads) 71.7 MB
ENCFF333YDZ.tsv tsv (gene quantifications) 10.4 MB
ENCFF354CDR.bam bam (alignments) 3.8 GB
ENCFF368YNK.bigWig bigWig (plus strand signal of unique reads) 69.8 MB
ENCFF422YFG.bigWig bigWig (plus strand signal of all reads) 81.2 MB
ENCFF431ZGK.bigWig bigWig (minus strand signal of all reads) 82.4 MB
ENCFF434DLA.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF451VXG.bam bam (transcriptome alignments) 6.0 GB
ENCFF454PHE.bigWig bigWig (minus strand signal of unique reads) 77.0 MB
ENCFF454VQW.bam bam (alignments) 5.0 GB
ENCFF468RHZ.bigWig bigWig (plus strand signal of unique reads) 74.8 MB
ENCFF479DXP.bigWig bigWig (plus strand signal of all reads) 75.1 MB
ENCFF507PCD.tsv tsv (transcript quantifications) 27.3 MB
ENCFF508SVH.tsv tsv (gene quantifications) 9.4 MB
ENCFF546JQI.bigWig bigWig (plus strand signal of unique reads) 73.4 MB
ENCFF576NKJ.tsv tsv (transcript quantifications) 24.9 MB
ENCFF578PLR.bigWig bigWig (plus strand signal of all reads) 77.2 MB
ENCFF582ZRY.bigWig bigWig (minus strand signal of all reads) 86.1 MB
ENCFF597VCS.bigWig bigWig (plus strand signal of unique reads) 71.5 MB
ENCFF619ILB.bigWig bigWig (plus strand signal of all reads) 78.3 MB
ENCFF621CQV.tsv tsv (differential expression quantifications) 1.8 MB
ENCFF656NZI.tsv tsv (differential expression quantifications) 4.3 MB
ENCFF661MJD.bam bam (alignments) 4.0 GB
ENCFF669BGF.bigWig bigWig (minus strand signal of all reads) 82.3 MB
ENCFF679XXZ.bigWig bigWig (plus strand signal of unique reads) 75.6 MB
ENCFF689DEN.tsv tsv (gene quantifications) 9.1 MB
ENCFF689XVP.fastq fastq (reads) 2.6 GB
ENCFF696TNQ.bigWig bigWig (minus strand signal of unique reads) 70.0 MB
ENCFF702UDY.fastq fastq (reads) 2.7 GB
ENCFF703QSG.bigWig bigWig (plus strand signal of unique reads) 75.1 MB
ENCFF709JLY.bigWig bigWig (minus strand signal of unique reads) 71.5 MB
ENCFF720JIG.bigWig bigWig (plus strand signal of all reads) 73.9 MB
ENCFF720MFN.bigWig bigWig (minus strand signal of all reads) 72.6 MB
ENCFF725PXP.bigWig bigWig (plus strand signal of all reads) 87.1 MB
ENCFF730GDK.fastq fastq (reads) 2.4 GB
ENCFF731KVO.bigWig bigWig (minus strand signal of all reads) 75.8 MB
ENCFF761YCL.bam bam (alignments) 4.7 GB
ENCFF762TBP.bigWig bigWig (minus strand signal of all reads) 79.9 MB
ENCFF766AFO.bigWig bigWig (minus strand signal of all reads) 86.0 MB
ENCFF772GJQ.bigWig bigWig (plus strand signal of unique reads) 74.8 MB
ENCFF780YWD.bigWig bigWig (plus strand signal of all reads) 87.2 MB
ENCFF795KZD.tsv tsv (transcript quantifications) 25.3 MB
ENCFF802THF.tsv tsv (transcript quantifications) 24.9 MB
ENCFF813BGP.bam bam (alignments) 4.5 GB
ENCFF827LZH.tar tar (differential splicing quantifications) 15.6 MB
ENCFF831SBV.bam bam (alignments) 4.7 GB
ENCFF861AWG.bigWig bigWig (minus strand signal of all reads) 86.2 MB
ENCFF869HTX.tsv tsv (gene quantifications) 10.4 MB
ENCFF896NJZ.bam bam (transcriptome alignments) 6.0 GB
ENCFF909SSA.fastq fastq (reads) 2.5 GB
ENCFF935KQD.bigWig bigWig (minus strand signal of unique reads) 73.3 MB
ENCFF944PCU.tsv tsv (gene quantifications) 9.4 MB
ENCFF954PLL.tsv tsv (gene quantifications) 9.1 MB
ENCFF963IJA.bam bam (alignments) 5.0 GB
ENCFF969IEX.bam bam (alignments) 3.8 GB
ENCFF969LOH.tar tar (differential splicing quantifications) 3.2 MB
ENCSR345VVZ ENCSR · via encode_api

RNA-seq on K562 cells treated with an shRNA knockdown against DHX30. (DHX30_BGKLV24)

Homo sapiens

92 data files
FileTypeSize
ENCFF013NJB.bigWig bigWig (plus strand signal of all reads) 73.9 MB
ENCFF021FMV.bigWig bigWig (plus strand signal of all reads) 65.0 MB
ENCFF021UEL.bigWig bigWig (plus strand signal of unique reads) 59.8 MB
ENCFF023SHS.tar tar (differential splicing quantifications) 3.0 MB
ENCFF058VYJ.bam bam (alignments) 4.0 GB
ENCFF069ZFK.tsv tsv (differential expression quantifications) 1.8 MB
ENCFF090PLS.tsv tsv (differential expression quantifications) 5.5 MB
ENCFF116JCG.tsv tsv (transcript quantifications) 29.8 MB
ENCFF117NAL.bigWig bigWig (minus strand signal of all reads) 64.7 MB
ENCFF124IDJ.bigWig bigWig (minus strand signal of unique reads) 58.3 MB
ENCFF143CXR.bigWig bigWig (plus strand signal of unique reads) 65.4 MB
ENCFF150XJW.bigWig bigWig (plus strand signal of all reads) 71.1 MB
ENCFF165RQG.tar tar (differential splicing quantifications) 13.0 MB
ENCFF168MPC.tsv tsv (differential expression quantifications) 4.1 MB
ENCFF192YZY.bigWig bigWig (minus strand signal of unique reads) 61.5 MB
ENCFF200ZTI.bigWig bigWig (minus strand signal of all reads) 65.8 MB
ENCFF240AXG.bam bam (transcriptome alignments) 5.1 GB
ENCFF246JNT.bam bam (transcriptome alignments) 4.2 GB
ENCFF252QJV.tsv tsv (transcript quantifications) 25.3 MB
ENCFF268BQZ.bigWig bigWig (plus strand signal of all reads) 73.9 MB
ENCFF268FCK.bigWig bigWig (plus strand signal of unique reads) 58.7 MB
ENCFF280NEO.fastq fastq (reads) 2.1 GB
ENCFF298GTH.bigWig bigWig (plus strand signal of unique reads) 61.4 MB
ENCFF301CFR.bam bam (alignments) 3.3 GB
ENCFF307WFM.bigWig bigWig (minus strand signal of all reads) 60.4 MB
ENCFF311OJS.bigWig bigWig (plus strand signal of all reads) 65.5 MB
ENCFF315HVA.bigWig bigWig (plus strand signal of unique reads) 63.2 MB
ENCFF325KRO.bam bam (alignments) 3.6 GB
ENCFF332OWT.bigWig bigWig (minus strand signal of unique reads) 63.7 MB
ENCFF343MKK.bigWig bigWig (plus strand signal of unique reads) 65.3 MB
ENCFF352BBZ.bigWig bigWig (minus strand signal of all reads) 70.0 MB
ENCFF424VAD.bam bam (alignments) 3.6 GB
ENCFF443WLT.bigWig bigWig (plus strand signal of all reads) 63.4 MB
ENCFF454JXB.bigWig bigWig (minus strand signal of unique reads) 62.5 MB
ENCFF471AKZ.bigWig bigWig (plus strand signal of all reads) 62.7 MB
ENCFF478HPP.bigWig bigWig (minus strand signal of unique reads) 57.1 MB
ENCFF480VYU.tsv tsv (gene quantifications) 9.4 MB
ENCFF497EZB.bigWig bigWig (minus strand signal of unique reads) 61.6 MB
ENCFF535LER.tsv tsv (transcript quantifications) 29.8 MB
ENCFF543PWW.tsv tsv (gene quantifications) 10.4 MB
ENCFF552ECL.bam bam (alignments) 3.3 GB
ENCFF558USR.bigWig bigWig (minus strand signal of unique reads) 60.4 MB
ENCFF568DPB.bigWig bigWig (minus strand signal of unique reads) 55.2 MB
ENCFF574YPV.bigWig bigWig (plus strand signal of unique reads) 63.9 MB
ENCFF581HIB.bigWig bigWig (minus strand signal of all reads) 72.9 MB
ENCFF584FUZ.tsv tsv (gene quantifications) 9.4 MB
ENCFF590MKZ.bigWig bigWig (minus strand signal of all reads) 72.9 MB
ENCFF591XUO.bigWig bigWig (minus strand signal of unique reads) 63.6 MB
ENCFF599EGJ.bigWig bigWig (plus strand signal of all reads) 71.0 MB
ENCFF599JFV.bam bam (alignments) 3.0 GB
ENCFF615OQQ.bigWig bigWig (plus strand signal of unique reads) 56.7 MB
ENCFF620DSQ.bigWig bigWig (minus strand signal of all reads) 62.6 MB
ENCFF620HEO.tsv tsv (transcript quantifications) 25.3 MB
ENCFF627MVM.bam bam (transcriptome alignments) 4.2 GB
ENCFF630UCR.bigWig bigWig (plus strand signal of all reads) 67.1 MB
ENCFF662GOS.bam bam (alignments) 4.0 GB
ENCFF684HIK.bam bam (transcriptome alignments) 4.6 GB
ENCFF688GYN.bigWig bigWig (minus strand signal of all reads) 61.6 MB
ENCFF701PIQ.bigWig bigWig (plus strand signal of all reads) 73.0 MB
ENCFF704HID.tsv tsv (transcript quantifications) 24.9 MB
ENCFF727ZLK.bigWig bigWig (plus strand signal of all reads) 61.6 MB
ENCFF730NNR.tar tar (differential splicing quantifications) 3.3 MB
ENCFF760AWK.fastq fastq (reads) 2.3 GB
ENCFF764XKO.bam bam (transcriptome alignments) 4.7 GB
ENCFF801PXK.bigWig bigWig (plus strand signal of unique reads) 62.9 MB
ENCFF811VOU.tsv tsv (transcript quantifications) 27.2 MB
ENCFF813YZF.bam bam (alignments) 3.6 GB
ENCFF814DNY.fastq fastq (reads) 2.1 GB
ENCFF816BEI.bigWig bigWig (plus strand signal of unique reads) 65.2 MB
ENCFF816HKN.tsv tsv (gene quantifications) 10.4 MB
ENCFF824BCY.bigWig bigWig (minus strand signal of all reads) 70.2 MB
ENCFF826EDM.bam bam (transcriptome alignments) 4.6 GB
ENCFF826GWY.bigWig bigWig (minus strand signal of all reads) 71.9 MB
ENCFF839XJC.tsv tsv (gene quantifications) 9.1 MB
ENCFF841FSD.bam bam (alignments) 3.0 GB
ENCFF842ANK.bam bam (alignments) 3.3 GB
ENCFF843BYJ.bigWig bigWig (plus strand signal of unique reads) 61.8 MB
ENCFF855WCY.bigWig bigWig (minus strand signal of unique reads) 59.9 MB
ENCFF857QBA.tsv tsv (transcript quantifications) 27.1 MB
ENCFF863ENC.bam bam (alignments) 3.0 GB
ENCFF863KAI.bigWig bigWig (minus strand signal of unique reads) 63.7 MB
ENCFF863KPQ.bigWig bigWig (minus strand signal of all reads) 63.9 MB
ENCFF867IZU.bam bam (alignments) 3.9 GB
ENCFF876LBQ.tsv tsv (transcript quantifications) 24.9 MB
ENCFF883OEW.bigWig bigWig (plus strand signal of all reads) 71.1 MB
ENCFF890ZGG.bigWig bigWig (minus strand signal of all reads) 70.2 MB
ENCFF901MMJ.tsv tsv (gene quantifications) 9.1 MB
ENCFF904ZZL.bigWig bigWig (plus strand signal of unique reads) 59.5 MB
ENCFF914QPT.bigWig bigWig (minus strand signal of unique reads) 58.3 MB
ENCFF942JUV.tsv tsv (differential expression quantifications) 2.8 MB
ENCFF973CMM.fastq fastq (reads) 1.9 GB
ENCFF992HCZ.tsv tsv (differential expression quantifications) 1.9 MB
ENCSR322XVS ENCSR · via encode_api

RNA-seq on K562 cells treated with an shRNA knockdown against PHF6. (PHF6_BGKLV21)

Homo sapiens

92 data files
FileTypeSize
ENCFF007MGP.bigWig bigWig (minus strand signal of unique reads) 58.3 MB
ENCFF007NOJ.tsv tsv (differential expression quantifications) 5.5 MB
ENCFF026VSX.tar tar (differential splicing quantifications) 3.3 MB
ENCFF028JVK.bigWig bigWig (plus strand signal of all reads) 95.2 MB
ENCFF029LSK.bigWig bigWig (plus strand signal of unique reads) 77.1 MB
ENCFF036ATQ.bigWig bigWig (plus strand signal of unique reads) 53.0 MB
ENCFF037UQW.tsv tsv (differential expression quantifications) 4.2 MB
ENCFF042LME.bigWig bigWig (minus strand signal of unique reads) 78.3 MB
ENCFF044SHM.bam bam (alignments) 2.7 GB
ENCFF059GWF.bigWig bigWig (minus strand signal of all reads) 65.2 MB
ENCFF072VCG.fastq fastq (reads) 3.1 GB
ENCFF083PEO.bigWig bigWig (minus strand signal of unique reads) 78.8 MB
ENCFF112OYK.tar tar (differential splicing quantifications) 14.6 MB
ENCFF122SKU.fastq fastq (reads) 1.7 GB
ENCFF133LGV.tar tar (differential splicing quantifications) 3.9 MB
ENCFF138JQO.bam bam (alignments) 5.9 GB
ENCFF144LIS.bam bam (alignments) 6.1 GB
ENCFF170GBE.bigWig bigWig (plus strand signal of all reads) 60.7 MB
ENCFF172ARN.bigWig bigWig (plus strand signal of all reads) 94.0 MB
ENCFF172QWT.bam bam (transcriptome alignments) 7.1 GB
ENCFF192JBE.bam bam (alignments) 3.2 GB
ENCFF193ENT.bigWig bigWig (plus strand signal of unique reads) 85.3 MB
ENCFF210NHZ.tsv tsv (gene quantifications) 9.4 MB
ENCFF213QVX.bigWig bigWig (minus strand signal of all reads) 92.6 MB
ENCFF214QDQ.bigWig bigWig (minus strand signal of all reads) 81.3 MB
ENCFF219HHU.tsv tsv (transcript quantifications) 27.3 MB
ENCFF226VBV.tsv tsv (transcript quantifications) 27.2 MB
ENCFF231BYN.bam bam (transcriptome alignments) 8.0 GB
ENCFF244UKQ.bigWig bigWig (minus strand signal of all reads) 94.0 MB
ENCFF251LSF.bigWig bigWig (plus strand signal of unique reads) 59.7 MB
ENCFF252DDY.bigWig bigWig (minus strand signal of unique reads) 58.3 MB
ENCFF261LRV.bigWig bigWig (plus strand signal of unique reads) 59.7 MB
ENCFF273OBB.bigWig bigWig (minus strand signal of unique reads) 75.1 MB
ENCFF276EDJ.bigWig bigWig (plus strand signal of all reads) 66.1 MB
ENCFF281RFH.bigWig bigWig (minus strand signal of all reads) 65.4 MB
ENCFF307UFX.bigWig bigWig (plus strand signal of all reads) 82.9 MB
ENCFF331RVV.tsv tsv (transcript quantifications) 25.3 MB
ENCFF340ZEG.bam bam (alignments) 3.1 GB
ENCFF350YQV.bam bam (alignments) 6.1 GB
ENCFF352CGU.bam bam (transcriptome alignments) 4.0 GB
ENCFF376KGO.tsv tsv (transcript quantifications) 24.9 MB
ENCFF405YYK.bigWig bigWig (minus strand signal of all reads) 94.0 MB
ENCFF408OZR.bigWig bigWig (plus strand signal of unique reads) 56.4 MB
ENCFF423OQY.tsv tsv (differential expression quantifications) 2.8 MB
ENCFF432OJL.bam bam (alignments) 3.2 GB
ENCFF440XCV.bigWig bigWig (plus strand signal of all reads) 84.4 MB
ENCFF463TLJ.bigWig bigWig (plus strand signal of unique reads) 56.2 MB
ENCFF497RME.tsv tsv (gene quantifications) 9.1 MB
ENCFF504OTF.tsv tsv (transcript quantifications) 29.8 MB
ENCFF519YAN.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF525CCL.bam bam (alignments) 5.1 GB
ENCFF532CMR.tsv tsv (differential expression quantifications) 1.8 MB
ENCFF543XVI.bigWig bigWig (minus strand signal of all reads) 59.0 MB
ENCFF581HTU.tsv tsv (gene quantifications) 9.1 MB
ENCFF586ANW.bigWig bigWig (minus strand signal of unique reads) 57.9 MB
ENCFF591GJI.tsv tsv (transcript quantifications) 25.4 MB
ENCFF591MWD.bigWig bigWig (plus strand signal of unique reads) 59.2 MB
ENCFF594XPE.bigWig bigWig (minus strand signal of all reads) 85.5 MB
ENCFF630SDT.bam bam (transcriptome alignments) 3.6 GB
ENCFF634BGG.bam bam (alignments) 2.6 GB
ENCFF645CHE.bigWig bigWig (plus strand signal of unique reads) 85.2 MB
ENCFF667RPZ.bigWig bigWig (minus strand signal of all reads) 59.6 MB
ENCFF671UAT.bam bam (transcriptome alignments) 7.2 GB
ENCFF678GBA.bam bam (alignments) 2.6 GB
ENCFF679EBE.bigWig bigWig (minus strand signal of unique reads) 83.0 MB
ENCFF685RVO.bigWig bigWig (plus strand signal of all reads) 59.8 MB
ENCFF691BWA.bigWig bigWig (minus strand signal of all reads) 83.3 MB
ENCFF699RXF.bigWig bigWig (plus strand signal of unique reads) 80.9 MB
ENCFF742RVD.bam bam (transcriptome alignments) 3.6 GB
ENCFF750BWA.bigWig bigWig (minus strand signal of all reads) 65.3 MB
ENCFF754KQX.bigWig bigWig (plus strand signal of all reads) 66.2 MB
ENCFF756FVR.tsv tsv (transcript quantifications) 24.9 MB
ENCFF767ERK.bigWig bigWig (minus strand signal of unique reads) 55.0 MB
ENCFF781ZTV.bigWig bigWig (plus strand signal of all reads) 87.1 MB
ENCFF790HJD.bigWig bigWig (minus strand signal of unique reads) 55.0 MB
ENCFF795AZE.tsv tsv (gene quantifications) 9.5 MB
ENCFF796QTG.bigWig bigWig (plus strand signal of all reads) 66.2 MB
ENCFF800QMZ.bigWig bigWig (plus strand signal of all reads) 95.2 MB
ENCFF818BFE.bigWig bigWig (minus strand signal of unique reads) 51.5 MB
ENCFF820RCP.fastq fastq (reads) 1.6 GB
ENCFF828AIH.bigWig bigWig (minus strand signal of all reads) 56.0 MB
ENCFF828JJZ.bigWig bigWig (plus strand signal of unique reads) 80.0 MB
ENCFF846BVQ.bigWig bigWig (plus strand signal of all reads) 57.1 MB
ENCFF859UNN.bigWig bigWig (minus strand signal of unique reads) 83.3 MB
ENCFF861RBS.tsv tsv (gene quantifications) 10.4 MB
ENCFF878UFB.fastq fastq (reads) 3.4 GB
ENCFF879SCA.bam bam (alignments) 5.0 GB
ENCFF893PZM.tsv tsv (gene quantifications) 10.4 MB
ENCFF927AUY.tsv tsv (transcript quantifications) 29.9 MB
ENCFF952TJO.bigWig bigWig (plus strand signal of unique reads) 85.3 MB
ENCFF967EKC.bam bam (alignments) 5.0 GB
ENCFF973NTI.bigWig bigWig (minus strand signal of unique reads) 83.3 MB
ENCSR770LYW ENCSR · via encode_api

RNA-seq on K562 cells treated with an shRNA knockdown against SAFB2. (SAFB2_BGKLV24)

Homo sapiens

92 data files
FileTypeSize
ENCFF011GQA.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 75.4 MB
ENCFF015CAG.bam bam (alignments); assembly: hg19; genome annotation: V19 5.5 GB
ENCFF021EWZ.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 96.6 MB
ENCFF032YKR.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 9.1 GB
ENCFF074SNE.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 109.0 MB
ENCFF076SVT.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 6.6 GB
ENCFF094PEF.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 87.0 MB
ENCFF094TKE.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 72.7 MB
ENCFF094WFZ.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 93.0 MB
ENCFF098EJT.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF118BKZ.fastq fastq (reads) 3.4 GB
ENCFF118GOQ.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 124.4 MB
ENCFF128BQC.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 8.1 GB
ENCFF148MUB.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.4 MB
ENCFF162GDZ.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 81.9 MB
ENCFF168SMN.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 4.2 MB
ENCFF194ONM.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF198QMX.bam bam (alignments); assembly: hg19; genome annotation: V19 8.4 GB
ENCFF199LDF.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 92.7 MB
ENCFF212DEG.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 102.0 MB
ENCFF221IZS.bam bam (alignments); assembly: GRCh38; genome annotation: V29 6.8 GB
ENCFF224VYG.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 16.3 MB
ENCFF226PQD.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 98.4 MB
ENCFF252OGO.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 109.5 MB
ENCFF253EPL.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 107.1 MB
ENCFF270XLH.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 80.7 MB
ENCFF282QSO.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 106.1 MB
ENCFF284VLY.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 97.6 MB
ENCFF287JYN.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 122.6 MB
ENCFF309GFQ.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 98.4 MB
ENCFF320LWG.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 78.5 MB
ENCFF334WQQ.fastq fastq (reads) 3.5 GB
ENCFF336WPP.bam bam (alignments); assembly: hg19; genome annotation: V19 5.5 GB
ENCFF354IVN.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 124.4 MB
ENCFF368VEV.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF369TVJ.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 85.5 MB
ENCFF376NRL.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 108.7 MB
ENCFF384MBC.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.9 MB
ENCFF390CDK.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 5.5 MB
ENCFF412KKQ.bam bam (alignments); assembly: GRCh38; genome annotation: V24 8.6 GB
ENCFF428DME.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 123.1 MB
ENCFF448DMQ.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 106.6 MB
ENCFF453FCY.bam bam (alignments); assembly: hg19; genome annotation: V19 6.9 GB
ENCFF454KIH.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF478KTK.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 74.2 MB
ENCFF490MRY.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 121.2 MB
ENCFF508SGZ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 72.1 MB
ENCFF509WYD.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF537UFE.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 70.2 MB
ENCFF549ZVX.bam bam (alignments); assembly: GRCh38; genome annotation: V24 6.8 GB
ENCFF567FLD.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 98.3 MB
ENCFF569KDS.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 87.0 MB
ENCFF572EMV.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 98.7 MB
ENCFF579FXC.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 79.4 MB
ENCFF582OKB.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF605NAW.bam bam (alignments); assembly: hg19; genome annotation: V19 6.6 GB
ENCFF611YNS.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 100.2 MB
ENCFF614ESP.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 4.4 MB
ENCFF619SWX.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 77.3 MB
ENCFF622TDG.bam bam (alignments); assembly: hg19; genome annotation: V19 6.9 GB
ENCFF626SEN.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 97.6 MB
ENCFF639INV.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 3.9 MB
ENCFF644HJG.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.5 MB
ENCFF647YGX.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 86.3 MB
ENCFF654VFM.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 85.2 MB
ENCFF665ONM.fastq fastq (reads) 4.3 GB
ENCFF673FFS.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.5 MB
ENCFF699CWM.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 123.1 MB
ENCFF699SAK.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 89.4 MB
ENCFF707EJL.fastq fastq (reads) 4.4 GB
ENCFF722IUA.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 90.9 MB
ENCFF738JAC.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 90.3 MB
ENCFF754QIP.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.9 MB
ENCFF762OPN.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 6.7 GB
ENCFF767GDW.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.0 MB
ENCFF830SWK.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 87.9 MB
ENCFF865JIQ.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF877DPS.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.4 MB
ENCFF879OSQ.bam bam (alignments); assembly: GRCh38; genome annotation: V24 7.0 GB
ENCFF900GJQ.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 8.1 GB
ENCFF915VZV.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 97.4 MB
ENCFF923UZB.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 7.5 GB
ENCFF927BNI.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.8 MB
ENCFF945YKP.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.5 MB
ENCFF946UEL.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 94.9 MB
ENCFF961QIX.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 73.6 MB
ENCFF965QVM.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 87.1 MB
ENCFF976ROI.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 97.5 MB
ENCFF976ZDH.bam bam (alignments); assembly: GRCh38; genome annotation: V29 8.6 GB
ENCFF980XVL.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF982EXQ.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 80.3 MB
ENCFF990YUW.bam bam (alignments); assembly: GRCh38; genome annotation: V24 5.5 GB
ENCSR721MXZ ENCSR · via encode_api

RNA-seq on K562 cells treated with an shRNA knockdown against ABCF1. (ABCF1_BGKLV29)

Homo sapiens

92 data files
FileTypeSize
ENCFF032JJO.bam bam (alignments); assembly: hg19; genome annotation: V19 8.7 GB
ENCFF038WLG.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 16.3 MB
ENCFF057DZW.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 134.4 MB
ENCFF064ISZ.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 111.5 MB
ENCFF066YRG.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 96.7 MB
ENCFF070YWT.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 4.4 MB
ENCFF074VRT.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 11.0 GB
ENCFF075USA.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.9 MB
ENCFF082HTI.fastq fastq (reads) 5.5 GB
ENCFF092DQF.bam bam (alignments); assembly: hg19; genome annotation: V19 8.8 GB
ENCFF092RDA.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 129.0 MB
ENCFF123IWZ.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF132ZTG.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 101.1 MB
ENCFF142RJC.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 25.0 MB
ENCFF146LDM.bam bam (alignments); assembly: hg19; genome annotation: V19 8.8 GB
ENCFF159UTK.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 130.6 MB
ENCFF184JZF.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.4 MB
ENCFF212SSS.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 117.2 MB
ENCFF231UTK.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 114.2 MB
ENCFF241ZYD.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 104.1 MB
ENCFF245URE.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 131.8 MB
ENCFF264ZGK.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.5 MB
ENCFF266AZO.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 114.8 MB
ENCFF276IWT.bam bam (alignments); assembly: GRCh38; genome annotation: V24 10.8 GB
ENCFF281VIE.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 102.9 MB
ENCFF285LXS.bam bam (alignments); assembly: GRCh38; genome annotation: V29 10.8 GB
ENCFF293ZQG.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 130.2 MB
ENCFF315CAL.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 111.5 MB
ENCFF345CYE.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 115.9 MB
ENCFF349IYQ.bam bam (alignments); assembly: GRCh38; genome annotation: V24 8.9 GB
ENCFF349YMM.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 103.6 MB
ENCFF353QPW.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 113.3 MB
ENCFF359WLF.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 5.2 MB
ENCFF360UPR.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 129.1 MB
ENCFF365XCH.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.0 MB
ENCFF366XXH.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 105.6 MB
ENCFF369KEJ.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 113.2 MB
ENCFF381AVU.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 113.1 MB
ENCFF382VRG.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 109.7 MB
ENCFF384GGO.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 99.2 MB
ENCFF410WYF.bam bam (alignments); assembly: GRCh38; genome annotation: V29 10.7 GB
ENCFF428BTW.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 12.3 GB
ENCFF442ILU.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 109.7 MB
ENCFF444LJL.fastq fastq (reads) 5.6 GB
ENCFF445EFX.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 11.1 GB
ENCFF466NWI.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 133.2 MB
ENCFF494AFA.bam bam (alignments); assembly: hg19; genome annotation: V19 10.4 GB
ENCFF498KDG.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.5 MB
ENCFF504WFJ.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 10.9 GB
ENCFF505BNL.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 115.2 MB
ENCFF509DKD.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 105.0 MB
ENCFF515XIO.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF519FBY.bam bam (alignments); assembly: GRCh38; genome annotation: V24 10.7 GB
ENCFF532OAV.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF543AWA.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.9 MB
ENCFF552MNU.fastq fastq (reads) 5.6 GB
ENCFF552TRL.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 107.5 MB
ENCFF558EDJ.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 113.5 MB
ENCFF571DIG.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 134.4 MB
ENCFF592BYK.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 130.2 MB
ENCFF616XHE.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.4 MB
ENCFF641NCU.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 115.1 MB
ENCFF642YMU.bam bam (alignments); assembly: hg19; genome annotation: V19 10.5 GB
ENCFF649NQU.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 115.7 MB
ENCFF661IOX.bam bam (alignments); assembly: hg19; genome annotation: V19 8.7 GB
ENCFF662EUV.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.5 MB
ENCFF702FXB.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 117.2 MB
ENCFF704MFD.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 101.8 MB
ENCFF712TWV.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.9 MB
ENCFF715QGC.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 5.6 MB
ENCFF719MPH.fastq fastq (reads) 5.5 GB
ENCFF724XFO.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 108.5 MB
ENCFF728DBO.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.5 MB
ENCFF774XAD.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 108.3 MB
ENCFF798EIB.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 4.3 MB
ENCFF803QWQ.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 117.4 MB
ENCFF805YLV.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 112.2 MB
ENCFF825OAK.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF831QRG.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 114.5 MB
ENCFF836CNC.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF867JYY.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 11.0 GB
ENCFF885DEK.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.7 MB
ENCFF886TXY.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 100.3 MB
ENCFF887QJN.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 106.6 MB
ENCFF897TBN.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 127.8 MB
ENCFF900KJE.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 115.2 MB
ENCFF903PZV.bam bam (alignments); assembly: GRCh38; genome annotation: V24 8.8 GB
ENCFF916PWJ.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 103.0 MB
ENCFF955CWV.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 12.5 GB
ENCFF965HEL.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 129.1 MB
ENCFF966IAN.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 112.3 MB
ENCFF980KOA.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 133.2 MB
ENCSR278CHI ENCSR · via encode_api

RNA-seq on HepG2 cells treated with an shRNA knockdown against SSB. (SSB_BGHLV37)

Homo sapiens

92 data files
FileTypeSize
ENCFF027QWX.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 93.5 MB
ENCFF030BCH.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 89.3 MB
ENCFF031GVF.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 7.5 GB
ENCFF034DBK.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 107.4 MB
ENCFF036NSH.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 8.0 GB
ENCFF060APC.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 100.9 MB
ENCFF084EGD.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF098QOO.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 95.8 MB
ENCFF105XIV.bam bam (alignments); assembly: hg19; genome annotation: V19 4.7 GB
ENCFF128NUZ.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.9 GB
ENCFF135RYL.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 5.5 MB
ENCFF136CHI.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF149MGL.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF166COZ.bam bam (alignments); assembly: hg19; genome annotation: V19 4.2 GB
ENCFF174DML.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 98.1 MB
ENCFF196ESE.bam bam (alignments); assembly: hg19; genome annotation: V19 3.9 GB
ENCFF222OMX.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 95.7 MB
ENCFF240JNV.bam bam (alignments); assembly: GRCh38; genome annotation: V29 5.6 GB
ENCFF265WBI.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF277KWA.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 85.6 MB
ENCFF286XRM.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.5 GB
ENCFF290DBW.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF319UQQ.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 106.7 MB
ENCFF322XEV.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF323NLP.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 98.1 MB
ENCFF327LHH.fastq fastq (reads) 2.8 GB
ENCFF328UCC.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 88.1 MB
ENCFF329XPA.fastq fastq (reads) 2.7 GB
ENCFF350LVR.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 87.0 MB
ENCFF354PQL.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 87.9 MB
ENCFF373EQT.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 97.0 MB
ENCFF373GNI.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 80.0 MB
ENCFF393CGW.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF407IEX.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 95.8 MB
ENCFF440CZZ.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 6.5 GB
ENCFF440MJP.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 90.0 MB
ENCFF451YLC.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 105.9 MB
ENCFF456IPV.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 91.7 MB
ENCFF469FHI.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 84.0 MB
ENCFF483SGN.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 98.2 MB
ENCFF492AKC.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.0 MB
ENCFF493NEN.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 91.0 MB
ENCFF509ITM.bam bam (alignments); assembly: GRCh38; genome annotation: V29 4.8 GB
ENCFF512ELZ.bam bam (alignments); assembly: GRCh38; genome annotation: V24 5.6 GB
ENCFF518BQX.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 90.3 MB
ENCFF534YWH.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 106.7 MB
ENCFF541ISO.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 86.0 MB
ENCFF557ZAG.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 95.7 MB
ENCFF558QDY.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 91.1 MB
ENCFF578DXQ.fastq fastq (reads) 3.0 GB
ENCFF586GYR.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 18.2 MB
ENCFF600HYE.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 108.5 MB
ENCFF611YKH.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 7.1 GB
ENCFF612OUL.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 93.4 MB
ENCFF628SKZ.fastq fastq (reads) 3.0 GB
ENCFF641MKX.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 6.9 GB
ENCFF641PHF.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 4.1 MB
ENCFF643KMA.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 5.3 MB
ENCFF647DVY.bam bam (alignments); assembly: hg19; genome annotation: V19 5.2 GB
ENCFF652HUI.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 96.4 MB
ENCFF657REP.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF695SSC.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.8 GB
ENCFF705NPV.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 82.3 MB
ENCFF708FDR.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.8 MB
ENCFF711WVQ.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 89.3 MB
ENCFF732LHR.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.4 MB
ENCFF733JNG.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 99.0 MB
ENCFF746WFT.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 94.2 MB
ENCFF761PCZ.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF761QDZ.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 87.0 MB
ENCFF782GFD.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 99.0 MB
ENCFF795MRZ.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.7 MB
ENCFF803MPG.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 98.2 MB
ENCFF809LEA.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 95.9 MB
ENCFF812WHP.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 83.4 MB
ENCFF819RUU.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.5 MB
ENCFF823ORR.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 86.5 MB
ENCFF837VFH.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF848SSX.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 98.3 MB
ENCFF853LMU.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 97.2 MB
ENCFF863YNJ.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 82.0 MB
ENCFF890MYC.bam bam (alignments); assembly: hg19; genome annotation: V19 4.2 GB
ENCFF892XZI.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 88.3 MB
ENCFF903XBM.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 6.6 GB
ENCFF916MSU.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 108.5 MB
ENCFF926LUP.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF926QHZ.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 89.2 MB
ENCFF931NCM.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.4 MB
ENCFF936XWE.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 96.5 MB
ENCFF957QHI.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 87.7 MB
ENCFF962AAW.bam bam (alignments); assembly: hg19; genome annotation: V19 3.9 GB
ENCFF982WPV.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 4.5 MB
ENCSR529QEZ ENCSR · via encode_api

shRNA knockdown against PRPF6 in HepG2 cells followed by RNA-seq. (PRPF6 BGHLV14)

Homo sapiens

92 data files
FileTypeSize
ENCFF007FPD.bigWig bigWig (minus strand signal of all reads) 84.2 MB
ENCFF008OKN.bam bam (alignments) 4.6 GB
ENCFF010JXT.fastq fastq (reads) 2.6 GB
ENCFF010VIY.bam bam (alignments) 4.0 GB
ENCFF012JYO.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF012SXV.bam bam (transcriptome alignments) 5.5 GB
ENCFF033NHF.bigWig bigWig (minus strand signal of unique reads) 68.4 MB
ENCFF045MGT.bigWig bigWig (plus strand signal of all reads) 75.6 MB
ENCFF049RKH.bigWig bigWig (minus strand signal of all reads) 77.1 MB
ENCFF092GHJ.bigWig bigWig (minus strand signal of all reads) 73.8 MB
ENCFF102FBN.bigWig bigWig (plus strand signal of unique reads) 70.6 MB
ENCFF115CIE.tsv tsv (gene quantifications) 10.4 MB
ENCFF121FVJ.bam bam (alignments) 3.8 GB
ENCFF159EBH.bigWig bigWig (minus strand signal of unique reads) 75.9 MB
ENCFF162EBM.bigWig bigWig (plus strand signal of unique reads) 74.7 MB
ENCFF173VFG.bigWig bigWig (minus strand signal of unique reads) 72.4 MB
ENCFF200EVV.bam bam (transcriptome alignments) 6.5 GB
ENCFF207TCZ.bam bam (alignments) 4.6 GB
ENCFF216RVH.bam bam (alignments) 4.0 GB
ENCFF224WRA.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF227XZQ.bigWig bigWig (plus strand signal of unique reads) 71.2 MB
ENCFF230AJR.bigWig bigWig (plus strand signal of all reads) 75.0 MB
ENCFF244IXN.fastq fastq (reads) 2.6 GB
ENCFF264YAY.tsv tsv (gene quantifications) 9.1 MB
ENCFF270FIG.tsv tsv (transcript quantifications) 27.3 MB
ENCFF274HLG.bigWig bigWig (plus strand signal of unique reads) 78.4 MB
ENCFF283DDL.bam bam (alignments) 4.0 GB
ENCFF308GIE.tar tar (differential splicing quantifications) 3.8 MB
ENCFF319ZSF.bigWig bigWig (minus strand signal of unique reads) 72.5 MB
ENCFF330VRB.bigWig bigWig (plus strand signal of unique reads) 79.2 MB
ENCFF344OHA.bigWig bigWig (plus strand signal of all reads) 86.0 MB
ENCFF390YKS.bigWig bigWig (minus strand signal of all reads) 77.9 MB
ENCFF392WGU.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF399DEZ.tar tar (differential splicing quantifications) 3.2 MB
ENCFF422OXD.bigWig bigWig (plus strand signal of all reads) 79.3 MB
ENCFF444YHN.bam bam (alignments) 4.5 GB
ENCFF447QVP.tsv tsv (transcript quantifications) 24.9 MB
ENCFF477BQS.bigWig bigWig (plus strand signal of all reads) 78.8 MB
ENCFF498YYT.tsv tsv (transcript quantifications) 29.8 MB
ENCFF499WOR.bam bam (alignments) 4.8 GB
ENCFF502BSV.bam bam (alignments) 4.8 GB
ENCFF524ZON.tsv tsv (transcript quantifications) 27.3 MB
ENCFF532ZJD.bigWig bigWig (plus strand signal of unique reads) 74.8 MB
ENCFF575KCY.bigWig bigWig (minus strand signal of unique reads) 76.8 MB
ENCFF580YUK.bam bam (alignments) 3.8 GB
ENCFF586HKO.tsv tsv (differential expression quantifications) 4.2 MB
ENCFF591MNR.bam bam (transcriptome alignments) 5.7 GB
ENCFF617NNH.bigWig bigWig (minus strand signal of all reads) 85.6 MB
ENCFF617RZJ.bigWig bigWig (minus strand signal of all reads) 77.5 MB
ENCFF617TEF.bam bam (transcriptome alignments) 5.8 GB
ENCFF619OPP.bigWig bigWig (minus strand signal of unique reads) 76.8 MB
ENCFF628IGJ.tsv tsv (gene quantifications) 10.4 MB
ENCFF632NQZ.tsv tsv (gene quantifications) 9.4 MB
ENCFF634CXO.bigWig bigWig (plus strand signal of all reads) 86.0 MB
ENCFF661IYG.tsv tsv (transcript quantifications) 25.3 MB
ENCFF670OYF.tsv tsv (transcript quantifications) 25.3 MB
ENCFF671ULY.bigWig bigWig (plus strand signal of unique reads) 79.1 MB
ENCFF677DFW.bam bam (transcriptome alignments) 5.6 GB
ENCFF681XMZ.bigWig bigWig (minus strand signal of all reads) 85.6 MB
ENCFF690CJU.fastq fastq (reads) 2.5 GB
ENCFF691VCB.bigWig bigWig (plus strand signal of all reads) 87.4 MB
ENCFF696GCJ.fastq fastq (reads) 2.5 GB
ENCFF707CRZ.bigWig bigWig (minus strand signal of unique reads) 68.9 MB
ENCFF709DIO.bigWig bigWig (plus strand signal of unique reads) 78.1 MB
ENCFF724IZS.bigWig bigWig (minus strand signal of all reads) 77.1 MB
ENCFF727JIT.tsv tsv (gene quantifications) 9.4 MB
ENCFF741RTW.bigWig bigWig (minus strand signal of all reads) 84.2 MB
ENCFF782DLV.bigWig bigWig (minus strand signal of unique reads) 75.7 MB
ENCFF789VOD.bigWig bigWig (plus strand signal of all reads) 87.5 MB
ENCFF793GJN.bigWig bigWig (plus strand signal of all reads) 85.8 MB
ENCFF796SOZ.bam bam (alignments) 4.6 GB
ENCFF814XHT.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF822VYA.bigWig bigWig (plus strand signal of unique reads) 78.3 MB
ENCFF825QAC.bam bam (transcriptome alignments) 6.3 GB
ENCFF835PYV.bigWig bigWig (minus strand signal of all reads) 84.2 MB
ENCFF853FJC.bigWig bigWig (minus strand signal of unique reads) 72.4 MB
ENCFF857JDG.bigWig bigWig (plus strand signal of unique reads) 74.8 MB
ENCFF864KKQ.bigWig bigWig (minus strand signal of all reads) 84.3 MB
ENCFF867ZPM.tsv tsv (transcript quantifications) 24.9 MB
ENCFF869WYY.bigWig bigWig (plus strand signal of unique reads) 74.6 MB
ENCFF874NTV.bigWig bigWig (minus strand signal of unique reads) 76.8 MB
ENCFF878NNM.bigWig bigWig (minus strand signal of unique reads) 72.5 MB
ENCFF887FWX.tsv tsv (transcript quantifications) 29.8 MB
ENCFF900JBK.bigWig bigWig (minus strand signal of all reads) 73.2 MB
ENCFF902TXE.tar tar (differential splicing quantifications) 15.7 MB
ENCFF904LEB.bigWig bigWig (minus strand signal of unique reads) 76.0 MB
ENCFF904PIQ.bigWig bigWig (plus strand signal of all reads) 78.8 MB
ENCFF914APH.bigWig bigWig (plus strand signal of all reads) 79.7 MB
ENCFF938FON.tsv tsv (gene quantifications) 9.1 MB
ENCFF954PSZ.bigWig bigWig (plus strand signal of unique reads) 79.2 MB
ENCFF966GXE.bam bam (alignments) 3.9 GB
ENCFF976ZWB.bigWig bigWig (plus strand signal of all reads) 85.9 MB
ENCSR003LSA ENCSR · via encode_api

RNA-seq on HepG2 cells treated with an shRNA knockdown against SNRNP200. (SNRNP200_BGHLV26)

Homo sapiens

92 data files
FileTypeSize
ENCFF012JVW.tsv tsv (gene quantifications) 10.4 MB
ENCFF012OUQ.bigWig bigWig (plus strand signal of unique reads) 73.6 MB
ENCFF048ZGV.bigWig bigWig (plus strand signal of unique reads) 66.8 MB
ENCFF066ONO.tsv tsv (transcript quantifications) 27.3 MB
ENCFF074BNY.bam bam (alignments) 5.3 GB
ENCFF085ELF.bigWig bigWig (plus strand signal of all reads) 81.7 MB
ENCFF091YAS.bam bam (alignments) 2.9 GB
ENCFF096CFY.bigWig bigWig (plus strand signal of unique reads) 70.3 MB
ENCFF121DIN.bigWig bigWig (plus strand signal of all reads) 73.3 MB
ENCFF129CGZ.bam bam (transcriptome alignments) 4.7 GB
ENCFF132QOS.bam bam (alignments) 5.2 GB
ENCFF138IKC.bigWig bigWig (minus strand signal of all reads) 79.7 MB
ENCFF159WPX.bigWig bigWig (minus strand signal of all reads) 80.2 MB
ENCFF161GHY.tsv tsv (transcript quantifications) 25.4 MB
ENCFF175ADB.tar tar (differential splicing quantifications) 14.1 MB
ENCFF177XXO.bam bam (transcriptome alignments) 5.4 GB
ENCFF179WEG.bigWig bigWig (minus strand signal of unique reads) 68.4 MB
ENCFF187CBX.bigWig bigWig (minus strand signal of all reads) 61.2 MB
ENCFF194QUZ.bam bam (alignments) 2.9 GB
ENCFF209DOO.bigWig bigWig (plus strand signal of all reads) 72.0 MB
ENCFF230FDI.bigWig bigWig (plus strand signal of unique reads) 73.6 MB
ENCFF232BDX.fastq fastq (reads) 3.2 GB
ENCFF245SGX.bigWig bigWig (minus strand signal of unique reads) 58.7 MB
ENCFF266KET.bigWig bigWig (minus strand signal of all reads) 80.2 MB
ENCFF268LLS.bigWig bigWig (plus strand signal of unique reads) 63.4 MB
ENCFF271CFZ.bigWig bigWig (minus strand signal of unique reads) 71.6 MB
ENCFF287XNM.bam bam (alignments) 4.4 GB
ENCFF298ERF.bigWig bigWig (plus strand signal of all reads) 81.7 MB
ENCFF307AOM.bigWig bigWig (plus strand signal of all reads) 75.4 MB
ENCFF335UIQ.tsv tsv (differential expression quantifications) 5.7 MB
ENCFF340PJV.bam bam (transcriptome alignments) 4.7 GB
ENCFF344VMA.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF360DVE.fastq fastq (reads) 2.1 GB
ENCFF369DUX.bigWig bigWig (minus strand signal of all reads) 73.9 MB
ENCFF385BXS.bigWig bigWig (plus strand signal of all reads) 62.3 MB
ENCFF390BTX.bam bam (transcriptome alignments) 7.2 GB
ENCFF390PTJ.tsv tsv (gene quantifications) 10.4 MB
ENCFF396LZY.tsv tsv (gene quantifications) 9.1 MB
ENCFF400XVD.bam bam (alignments) 4.3 GB
ENCFF429OPQ.tar tar (differential splicing quantifications) 3.3 MB
ENCFF433UMI.bam bam (alignments) 2.9 GB
ENCFF434KPM.bigWig bigWig (minus strand signal of unique reads) 57.8 MB
ENCFF434SMQ.bigWig bigWig (plus strand signal of all reads) 81.1 MB
ENCFF436XFI.bigWig bigWig (plus strand signal of unique reads) 63.4 MB
ENCFF447SFA.bam bam (transcriptome alignments) 7.2 GB
ENCFF447ZJZ.bigWig bigWig (plus strand signal of all reads) 70.4 MB
ENCFF448UXJ.bigWig bigWig (minus strand signal of unique reads) 61.3 MB
ENCFF493XCQ.bigWig bigWig (minus strand signal of all reads) 70.4 MB
ENCFF503UJR.bigWig bigWig (minus strand signal of all reads) 69.1 MB
ENCFF505VBJ.tsv tsv (transcript quantifications) 27.2 MB
ENCFF513KLM.bigWig bigWig (minus strand signal of all reads) 59.6 MB
ENCFF530LUE.tsv tsv (gene quantifications) 9.5 MB
ENCFF531MQM.bigWig bigWig (minus strand signal of unique reads) 64.8 MB
ENCFF550KCB.tsv tsv (transcript quantifications) 25.0 MB
ENCFF560BQI.bigWig bigWig (plus strand signal of unique reads) 60.3 MB
ENCFF577OGZ.bam bam (alignments) 5.3 GB
ENCFF591YUI.bigWig bigWig (minus strand signal of unique reads) 67.2 MB
ENCFF607BPS.fastq fastq (reads) 3.3 GB
ENCFF618JZD.tsv tsv (transcript quantifications) 25.4 MB
ENCFF641CAM.bigWig bigWig (plus strand signal of unique reads) 59.2 MB
ENCFF641ETM.bam bam (transcriptome alignments) 8.3 GB
ENCFF655IHE.bigWig bigWig (minus strand signal of unique reads) 71.7 MB
ENCFF658LBW.bigWig bigWig (minus strand signal of unique reads) 61.7 MB
ENCFF662TSK.bigWig bigWig (plus strand signal of all reads) 70.4 MB
ENCFF667UOO.bigWig bigWig (minus strand signal of all reads) 69.1 MB
ENCFF674LLQ.bigWig bigWig (plus strand signal of unique reads) 68.9 MB
ENCFF678ZQH.tsv tsv (differential expression quantifications) 2.8 MB
ENCFF702OZQ.bigWig bigWig (minus strand signal of all reads) 72.0 MB
ENCFF703ZIX.bigWig bigWig (plus strand signal of all reads) 65.0 MB
ENCFF710HZB.bigWig bigWig (plus strand signal of unique reads) 63.0 MB
ENCFF721BOF.bigWig bigWig (plus strand signal of all reads) 60.8 MB
ENCFF732KSG.bigWig bigWig (minus strand signal of unique reads) 55.4 MB
ENCFF733RPL.bigWig bigWig (minus strand signal of all reads) 68.3 MB
ENCFF737IPY.bigWig bigWig (minus strand signal of all reads) 63.8 MB
ENCFF738XUP.bigWig bigWig (plus strand signal of all reads) 69.4 MB
ENCFF755ZDO.tsv tsv (differential expression quantifications) 1.6 MB
ENCFF756JFY.fastq fastq (reads) 2.1 GB
ENCFF763VHQ.bam bam (alignments) 3.5 GB
ENCFF776JCZ.bigWig bigWig (minus strand signal of unique reads) 61.8 MB
ENCFF781DOB.tsv tsv (transcript quantifications) 29.9 MB
ENCFF809FCF.bam bam (alignments) 3.5 GB
ENCFF816DVU.tar tar (differential splicing quantifications) 2.8 MB
ENCFF831XLU.bam bam (alignments) 4.3 GB
ENCFF832VDU.bigWig bigWig (minus strand signal of unique reads) 71.7 MB
ENCFF876EAX.tsv tsv (transcript quantifications) 25.0 MB
ENCFF903IGF.bigWig bigWig (plus strand signal of unique reads) 73.7 MB
ENCFF920TDC.bam bam (alignments) 3.5 GB
ENCFF946KNP.tsv tsv (transcript quantifications) 29.9 MB
ENCFF953KMK.bigWig bigWig (plus strand signal of unique reads) 57.0 MB
ENCFF959EJG.tsv tsv (gene quantifications) 9.1 MB
ENCFF967MQQ.tsv tsv (gene quantifications) 9.5 MB
ENCFF998KUY.tsv tsv (differential expression quantifications) 4.2 MB
ENCSR571ROL ENCSR · via encode_api

eCLIP experiment on HepG2 against XRCC6

Homo sapiens

34 data files
FileTypeSize
ENCFF009YUT.bigWig bigWig (minus strand signal of unique reads) 18.5 MB
ENCFF021CNP.bam bam (alignments) 322.5 MB
ENCFF128IDP.bam bam (alignments) 151.0 MB
ENCFF178YXI.bed bed (peaks) 319.8 KB
ENCFF180FBO.bigWig bigWig (minus strand signal of unique reads) 18.4 MB
ENCFF188CRN.bigWig bigWig (plus strand signal of unique reads) 8.3 MB
ENCFF202EFD.fastq fastq (reads) 256.2 MB
ENCFF202PUU.bigBed bigBed (peaks) 316.9 KB
ENCFF225IXQ.bed bed (peaks) 630.3 KB
ENCFF246PWB.fastq fastq (reads) 275.8 MB
ENCFF311LTM.bigBed bigBed (peaks) 1.2 MB
ENCFF325EMY.bigBed bigBed (peaks) 266.2 KB
ENCFF356JSO.bed bed (peaks) 1.3 MB
ENCFF381LFD.bed bed (peaks) 1.3 MB
ENCFF395BRB.bigWig bigWig (plus strand signal of unique reads) 8.4 MB
ENCFF411CQJ.bigWig bigWig (minus strand signal of unique reads) 8.0 MB
ENCFF438ULK.bam bam (alignments) 319.2 MB
ENCFF464GUK.fastq fastq (reads) 364.5 MB
ENCFF469LWT.bigBed bigBed (peaks) 2.2 MB
ENCFF474WKB.bam bam (alignments) 149.3 MB
ENCFF581MNQ.bigBed bigBed (peaks) 1.2 MB
ENCFF595KXG.bigBed bigBed (peaks) 2.2 MB
ENCFF632XDW.fastq fastq (reads) 394.1 MB
ENCFF656IDO.bed bed (peaks) 2.7 KB
ENCFF728ANU.bigWig bigWig (plus strand signal of unique reads) 18.9 MB
ENCFF730NRC.bed bed (peaks) 263.1 KB
ENCFF779LCF.bigWig bigWig (minus strand signal of unique reads) 8.0 MB
ENCFF798VRH.bigWig bigWig (plus strand signal of unique reads) 18.8 MB
ENCFF862XEI.bed bed (peaks) 629.7 KB
ENCFF863EJQ.bigBed bigBed (peaks) 518.1 KB
ENCFF884KAX.bigBed bigBed (peaks) 698.5 KB
ENCFF907AEP.bed bed (peaks) 96.7 KB
ENCFF965SMN.bed bed (peaks) 107.4 KB
ENCFF993VRZ.bed bed (peaks) 2.8 KB
ENCSR116YMU ENCSR · via encode_api

shRNA knockdown against GNB2L1 in HepG2 cells followed by RNA-seq. (GNB2L1_BGHLV18)

Homo sapiens

92 data files
FileTypeSize
ENCFF007FIZ.tsv tsv (gene quantifications) 9.4 MB
ENCFF016ETQ.tsv tsv (transcript quantifications) 24.8 MB
ENCFF026HVU.bigWig bigWig (minus strand signal of unique reads) 81.6 MB
ENCFF028ZOC.bigWig bigWig (plus strand signal of unique reads) 80.0 MB
ENCFF039BJU.bam bam (alignments) 3.4 GB
ENCFF043LRB.tsv tsv (differential expression quantifications) 1.8 MB
ENCFF045VHF.bigWig bigWig (plus strand signal of unique reads) 60.6 MB
ENCFF046OKX.bigWig bigWig (minus strand signal of all reads) 71.4 MB
ENCFF068MJT.bam bam (alignments) 4.1 GB
ENCFF070ISC.bam bam (alignments) 3.2 GB
ENCFF070OCD.bigWig bigWig (plus strand signal of unique reads) 84.2 MB
ENCFF072VBO.bigWig bigWig (plus strand signal of unique reads) 84.2 MB
ENCFF077YRP.tar tar (differential splicing quantifications) 3.8 MB
ENCFF082QXA.bigWig bigWig (plus strand signal of all reads) 83.3 MB
ENCFF095OLM.bam bam (transcriptome alignments) 4.5 GB
ENCFF102LEQ.bigWig bigWig (plus strand signal of all reads) 64.6 MB
ENCFF115UWH.bigWig bigWig (plus strand signal of unique reads) 65.2 MB
ENCFF135NIB.bigWig bigWig (minus strand signal of unique reads) 60.7 MB
ENCFF151UZX.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF156OBI.bigWig bigWig (minus strand signal of all reads) 70.1 MB
ENCFF157YVT.bigWig bigWig (plus strand signal of all reads) 91.9 MB
ENCFF165LLQ.bigWig bigWig (plus strand signal of all reads) 72.9 MB
ENCFF168LCG.bigWig bigWig (minus strand signal of unique reads) 63.3 MB
ENCFF195XZW.bigWig bigWig (minus strand signal of all reads) 84.0 MB
ENCFF203RUX.bam bam (transcriptome alignments) 6.2 GB
ENCFF207JLV.bigWig bigWig (plus strand signal of all reads) 83.1 MB
ENCFF208ZSK.bigWig bigWig (minus strand signal of unique reads) 63.2 MB
ENCFF218YSZ.tsv tsv (gene quantifications) 10.4 MB
ENCFF222VND.tsv tsv (gene quantifications) 9.1 MB
ENCFF225TIC.bigWig bigWig (minus strand signal of unique reads) 81.6 MB
ENCFF276AAO.bigWig bigWig (plus strand signal of unique reads) 77.5 MB
ENCFF283EHK.bigWig bigWig (minus strand signal of all reads) 65.9 MB
ENCFF286VNE.bigWig bigWig (minus strand signal of all reads) 81.6 MB
ENCFF291QPL.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF293ZCW.bigWig bigWig (plus strand signal of unique reads) 65.3 MB
ENCFF297QKO.bigWig bigWig (minus strand signal of unique reads) 58.6 MB
ENCFF321AWD.bigWig bigWig (minus strand signal of unique reads) 60.7 MB
ENCFF357QYT.bam bam (alignments) 2.7 GB
ENCFF364TBF.tar tar (differential splicing quantifications) 3.2 MB
ENCFF378CQW.bigWig bigWig (minus strand signal of all reads) 90.1 MB
ENCFF380MCA.bam bam (transcriptome alignments) 4.0 GB
ENCFF402QCV.bigWig bigWig (minus strand signal of all reads) 71.4 MB
ENCFF426ZZV.bam bam (alignments) 4.1 GB
ENCFF431FAI.bigWig bigWig (minus strand signal of all reads) 90.0 MB
ENCFF464VKX.bam bam (alignments) 2.7 GB
ENCFF468IAR.fastq fastq (reads) 1.8 GB
ENCFF471UJV.bigWig bigWig (plus strand signal of all reads) 71.5 MB
ENCFF475OGC.tsv tsv (transcript quantifications) 24.9 MB
ENCFF480OOP.bam bam (alignments) 5.0 GB
ENCFF485XKF.bigWig bigWig (minus strand signal of unique reads) 75.0 MB
ENCFF492BTX.fastq fastq (reads) 2.8 GB
ENCFF500LWB.bigWig bigWig (plus strand signal of all reads) 67.5 MB
ENCFF506XFA.bam bam (alignments) 4.8 GB
ENCFF516DON.tsv tsv (transcript quantifications) 29.8 MB
ENCFF516MAH.tsv tsv (transcript quantifications) 25.3 MB
ENCFF531HJU.tsv tsv (transcript quantifications) 25.2 MB
ENCFF542JNW.bam bam (transcriptome alignments) 7.1 GB
ENCFF555BOO.bigWig bigWig (plus strand signal of all reads) 91.9 MB
ENCFF560NVD.bigWig bigWig (plus strand signal of all reads) 91.9 MB
ENCFF560PVU.bigWig bigWig (minus strand signal of unique reads) 76.9 MB
ENCFF580JQC.tar tar (differential splicing quantifications) 15.2 MB
ENCFF612QFV.bigWig bigWig (plus strand signal of all reads) 86.1 MB
ENCFF617EBH.bigWig bigWig (minus strand signal of all reads) 65.1 MB
ENCFF643IZO.bigWig bigWig (plus strand signal of all reads) 73.0 MB
ENCFF644TQU.bigWig bigWig (minus strand signal of unique reads) 81.6 MB
ENCFF653RHY.tsv tsv (transcript quantifications) 27.2 MB
ENCFF659SYD.fastq fastq (reads) 1.7 GB
ENCFF667AKP.bam bam (transcriptome alignments) 6.3 GB
ENCFF667BSG.bigWig bigWig (minus strand signal of all reads) 81.1 MB
ENCFF671NMJ.bigWig bigWig (plus strand signal of unique reads) 62.4 MB
ENCFF727FTV.bigWig bigWig (plus strand signal of all reads) 66.4 MB
ENCFF755BAZ.bam bam (alignments) 5.0 GB
ENCFF755WXX.tsv tsv (differential expression quantifications) 4.3 MB
ENCFF767KHI.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF768SMJ.bigWig bigWig (minus strand signal of unique reads) 77.4 MB
ENCFF771DDD.tsv tsv (gene quantifications) 9.4 MB
ENCFF798TIK.bam bam (alignments) 2.8 GB
ENCFF798WSI.tsv tsv (transcript quantifications) 27.4 MB
ENCFF831BCS.bigWig bigWig (plus strand signal of unique reads) 65.2 MB
ENCFF837MHQ.bigWig bigWig (plus strand signal of unique reads) 62.6 MB
ENCFF841XPX.bigWig bigWig (plus strand signal of unique reads) 79.2 MB
ENCFF847HQV.fastq fastq (reads) 2.6 GB
ENCFF870KFE.bam bam (alignments) 3.4 GB
ENCFF879GPZ.bam bam (alignments) 4.2 GB
ENCFF884COD.tsv tsv (transcript quantifications) 29.7 MB
ENCFF885MXN.bigWig bigWig (plus strand signal of unique reads) 84.2 MB
ENCFF890NXF.bigWig bigWig (minus strand signal of unique reads) 63.3 MB
ENCFF942PZR.bigWig bigWig (minus strand signal of all reads) 90.0 MB
ENCFF950CKD.tsv tsv (gene quantifications) 9.1 MB
ENCFF956ORN.tsv tsv (gene quantifications) 10.4 MB
ENCFF964UGN.bigWig bigWig (minus strand signal of all reads) 62.9 MB
ENCFF981PNL.bam bam (transcriptome alignments) 4.0 GB
ENCSR853PBF ENCSR · via encode_api

shRNA knockdown against DHX30 in HepG2 cells followed by RNA-seq. (DHX30-32-BGHLV20)

Homo sapiens

92 data files
FileTypeSize
ENCFF017YMK.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 61.2 MB
ENCFF020DQO.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 74.4 MB
ENCFF028QEE.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 65.2 MB
ENCFF031KTB.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.1 GB
ENCFF045TOT.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF081CGD.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 68.0 MB
ENCFF092MUL.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.3 MB
ENCFF094XSH.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 14.5 MB
ENCFF180JBY.bam bam (alignments); assembly: hg19; genome annotation: V19 3.6 GB
ENCFF180VNG.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF180ZCX.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.9 MB
ENCFF193LZV.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.9 MB
ENCFF206DXD.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 63.0 MB
ENCFF208KSB.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 62.0 MB
ENCFF209LFW.fastq fastq (reads) 2.1 GB
ENCFF225TJN.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 66.9 MB
ENCFF226OZA.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 64.1 MB
ENCFF246ZVR.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 4.2 MB
ENCFF252KYY.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 62.0 MB
ENCFF266BXR.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF307BQZ.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 60.4 MB
ENCFF329MVS.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 4.7 GB
ENCFF333CLM.bam bam (alignments); assembly: GRCh38; genome annotation: V29 4.2 GB
ENCFF335ZYN.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 66.3 MB
ENCFF344GWG.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 60.4 MB
ENCFF348GGG.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 64.4 MB
ENCFF363OSS.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 65.3 MB
ENCFF367GWJ.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 72.6 MB
ENCFF390RNM.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 73.3 MB
ENCFF400ODE.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 61.2 MB
ENCFF402UGA.bam bam (alignments); assembly: hg19; genome annotation: V19 4.1 GB
ENCFF433WGE.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF441NTZ.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF444YTI.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 61.7 MB
ENCFF445RWU.bam bam (alignments); assembly: hg19; genome annotation: V19 3.6 GB
ENCFF458EWR.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.3 MB
ENCFF459GGD.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 75.7 MB
ENCFF466XVS.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 57.6 MB
ENCFF485PKI.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 3.2 MB
ENCFF502YPG.bam bam (alignments); assembly: hg19; genome annotation: V19 3.5 GB
ENCFF504LFH.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 66.2 MB
ENCFF512APM.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 67.8 MB
ENCFF515ANL.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 5.3 GB
ENCFF515OEI.fastq fastq (reads) 2.3 GB
ENCFF519CYF.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.2 GB
ENCFF524PCS.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 58.3 MB
ENCFF542NBD.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 4.8 GB
ENCFF546UVR.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF580TXE.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF596FJS.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF596KGB.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 4.7 GB
ENCFF602DTY.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 4.8 GB
ENCFF625UXQ.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 5.2 GB
ENCFF655WUY.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 56.4 MB
ENCFF662EPC.fastq fastq (reads) 2.1 GB
ENCFF671FCA.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 65.0 MB
ENCFF675QNI.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 72.2 MB
ENCFF678BAP.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 5.6 MB
ENCFF680YNJ.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 65.0 MB
ENCFF682WDF.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 66.8 MB
ENCFF702IKL.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 60.3 MB
ENCFF712AIB.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 74.4 MB
ENCFF712DJZ.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 68.0 MB
ENCFF720KPV.bam bam (alignments); assembly: GRCh38; genome annotation: V29 4.1 GB
ENCFF731HOS.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 73.9 MB
ENCFF740ENI.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 66.2 MB
ENCFF741ZAB.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 62.7 MB
ENCFF751GDU.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 65.5 MB
ENCFF751TAL.bam bam (alignments); assembly: hg19; genome annotation: V19 4.0 GB
ENCFF759QWF.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 74.0 MB
ENCFF770DKI.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 65.2 MB
ENCFF781IXU.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 74.5 MB
ENCFF789AYA.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.5 GB
ENCFF815FBV.bam bam (alignments); assembly: hg19; genome annotation: V19 3.5 GB
ENCFF815MJC.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 72.7 MB
ENCFF824BOB.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 67.0 MB
ENCFF834PAK.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 61.9 MB
ENCFF835QUB.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF835ZMU.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 2.7 MB
ENCFF851FTW.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF872LKC.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.6 GB
ENCFF886YVP.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 59.4 MB
ENCFF891WXU.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 62.9 MB
ENCFF910TAE.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 65.9 MB
ENCFF918LAR.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.8 MB
ENCFF919YHL.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF921RKL.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 75.7 MB
ENCFF942ELT.fastq fastq (reads) 2.2 GB
ENCFF943FTA.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 66.4 MB
ENCFF950STI.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF983DCE.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 73.3 MB
ENCFF993OBZ.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 68.5 MB
ENCSR841EQA ENCSR · via encode_api

eCLIP experiment on HepG2 against TAF15

Homo sapiens

36 data files
FileTypeSize
ENCFF024UZL.bigBed bigBed (peaks) 394.4 KB
ENCFF034THM.bigWig bigWig (plus strand signal of unique reads) 36.9 MB
ENCFF035UXQ.bigWig bigWig (plus strand signal of unique reads) 39.3 MB
ENCFF060WSO.bigWig bigWig (minus strand signal of unique reads) 35.4 MB
ENCFF063BTH.bed bed (peaks) 3.7 MB
ENCFF185GGV.fastq fastq (reads) 491.7 MB
ENCFF192XSY.fastq fastq (reads) 466.3 MB
ENCFF197QXG.bigBed bigBed (peaks) 1.6 MB
ENCFF206XUM.bigBed bigBed (peaks) 6.7 MB
ENCFF209XXY.bigBed bigBed (peaks) 6.6 MB
ENCFF213AZD.bigBed bigBed (peaks) 6.8 MB
ENCFF285LCL.bed bed (peaks) 156.4 KB
ENCFF383ZAQ.bed bed (peaks) 3.7 MB
ENCFF406ZDR.bigBed bigBed (peaks) 925.4 KB
ENCFF420FTB.bam bam (alignments) 758.7 MB
ENCFF456KCB.fastq fastq (reads) 471.1 MB
ENCFF499RET.bigWig bigWig (minus strand signal of unique reads) 38.1 MB
ENCFF508MEG.bigBed bigBed (peaks) 1.8 MB
ENCFF513PTZ.bed bed (peaks) 14.7 KB
ENCFF552FVV.bigWig bigWig (plus strand signal of unique reads) 38.2 MB
ENCFF566EAE.bed bed (peaks) 15.9 KB
ENCFF603JTU.bed bed (peaks) 3.7 MB
ENCFF626WJW.bed bed (peaks) 443.8 KB
ENCFF660XYR.bed bed (peaks) 164.5 KB
ENCFF701ZSE.bam bam (alignments) 691.5 MB
ENCFF702WRF.bigWig bigWig (minus strand signal of unique reads) 36.0 MB
ENCFF718IXR.fastq fastq (reads) 452.0 MB
ENCFF730OHC.bam bam (alignments) 708.5 MB
ENCFF846YVU.bigWig bigWig (minus strand signal of unique reads) 37.5 MB
ENCFF863MSD.bigWig bigWig (plus strand signal of unique reads) 37.5 MB
ENCFF878VIO.bigBed bigBed (peaks) 6.7 MB
ENCFF883AOS.bed bed (peaks) 479.3 KB
ENCFF899ZEH.bed bed (peaks) 3.6 MB
ENCFF938MSO.bigBed bigBed (peaks) 414.5 KB
ENCFF979UYB.bigBed bigBed (peaks) 858.6 KB
ENCFF981SIK.bam bam (alignments) 776.5 MB
ENCSR137HKS ENCSR · via encode_api

shRNA knockdown against PRPF8 in K562 cells followed by RNA-seq. (PRPF8_BGKLV19)

Homo sapiens

92 data files
FileTypeSize
ENCFF002VFD.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 71.8 MB
ENCFF010SRL.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 67.3 MB
ENCFF011LIU.bam bam (alignments); assembly: hg19; genome annotation: V19 3.2 GB
ENCFF034XHT.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF047EMI.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF050PJL.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 66.8 MB
ENCFF060HUP.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 77.4 MB
ENCFF067SVI.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.7 MB
ENCFF096IJH.bam bam (alignments); assembly: hg19; genome annotation: V19 3.8 GB
ENCFF129YGD.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 71.0 MB
ENCFF139NIC.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 3.0 MB
ENCFF149QCM.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 5.5 GB
ENCFF158BHK.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 64.5 MB
ENCFF164SHM.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 73.2 MB
ENCFF185AZV.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 69.3 MB
ENCFF185JYR.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF189SXW.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 80.7 MB
ENCFF191DSK.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 77.4 MB
ENCFF207TYT.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 80.7 MB
ENCFF223XTS.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 69.0 MB
ENCFF224SED.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 67.7 MB
ENCFF233CBL.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 64.3 MB
ENCFF237PYU.fastq fastq (reads) 2.0 GB
ENCFF245IRZ.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 80.1 MB
ENCFF266KAB.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 69.5 MB
ENCFF270NKR.bam bam (alignments); assembly: GRCh38; genome annotation: V29 4.4 GB
ENCFF277XVE.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 71.4 MB
ENCFF279QZK.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 5.3 MB
ENCFF287ERH.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 73.1 MB
ENCFF299FMW.bam bam (alignments); assembly: hg19; genome annotation: V19 3.4 GB
ENCFF301UGH.bam bam (alignments); assembly: hg19; genome annotation: V19 3.2 GB
ENCFF352VWQ.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 71.1 MB
ENCFF353TSR.fastq fastq (reads) 2.1 GB
ENCFF365OGW.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 73.1 MB
ENCFF378ERF.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.4 MB
ENCFF381NBU.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.9 MB
ENCFF382WHM.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 71.3 MB
ENCFF393VAG.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 70.1 MB
ENCFF394DQC.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF395IOD.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 14.4 MB
ENCFF395LXU.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF415DIG.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 78.3 MB
ENCFF425MYO.bam bam (alignments); assembly: hg19; genome annotation: V19 3.4 GB
ENCFF488GCC.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 70.6 MB
ENCFF494VBI.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 69.0 MB
ENCFF503AME.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 73.0 MB
ENCFF527AQG.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 68.9 MB
ENCFF537JDX.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 65.7 MB
ENCFF541EBO.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF541HWQ.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF567DFO.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 68.3 MB
ENCFF579DXX.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 72.7 MB
ENCFF591JJU.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 5.5 MB
ENCFF595QXP.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 67.3 MB
ENCFF619HZQ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 70.9 MB
ENCFF631DIW.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF631YXQ.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 72.4 MB
ENCFF642FTJ.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 71.3 MB
ENCFF660WGY.bam bam (alignments); assembly: hg19; genome annotation: V19 4.0 GB
ENCFF664ZQE.fastq fastq (reads) 2.2 GB
ENCFF675JEH.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF678YOK.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 4.9 GB
ENCFF687GVB.fastq fastq (reads) 2.1 GB
ENCFF689SRV.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 78.8 MB
ENCFF694DXD.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.4 GB
ENCFF701BTB.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF714YMY.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 4.6 GB
ENCFF729HVO.bam bam (alignments); assembly: GRCh38; genome annotation: V29 4.2 GB
ENCFF737VLT.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 71.2 MB
ENCFF763OKK.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 65.3 MB
ENCFF771NNP.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 4.8 GB
ENCFF774KTV.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.2 MB
ENCFF776GFI.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 67.1 MB
ENCFF784QOC.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 69.6 MB
ENCFF785FFZ.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.4 GB
ENCFF789QYK.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 70.6 MB
ENCFF819JSU.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 62.6 MB
ENCFF854LJM.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 4.4 MB
ENCFF857OJQ.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 76.9 MB
ENCFF876KQQ.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 78.8 MB
ENCFF877VVK.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.2 GB
ENCFF885OLP.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 79.2 MB
ENCFF900LRE.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF905FJH.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 78.7 MB
ENCFF905NOL.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 74.6 MB
ENCFF905OFD.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF906OPX.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.6 GB
ENCFF958RLQ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 66.3 MB
ENCFF966HIX.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 4.4 MB
ENCFF971JEI.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 4.6 GB
ENCFF971JKR.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 79.2 MB
ENCFF973DYA.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 5.2 GB
ENCSR542ESY ENCSR · via encode_api

RNA-seq on HepG2 cells treated with an shRNA knockdown against KRR1. (KRR1_BGHLV27)

Homo sapiens

92 data files
FileTypeSize
ENCFF008QZU.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF019KEN.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 99.2 MB
ENCFF025FCD.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 97.0 MB
ENCFF025NBT.bam bam (alignments); assembly: GRCh38; genome annotation: V29 6.2 GB
ENCFF052SJV.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 104.6 MB
ENCFF053CDN.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 97.8 MB
ENCFF058AVY.fastq fastq (reads) 3.6 GB
ENCFF067VNJ.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.9 MB
ENCFF080VZP.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 99.6 MB
ENCFF084GVQ.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 5.6 MB
ENCFF095UTZ.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 88.5 MB
ENCFF133JII.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 84.7 MB
ENCFF142UYN.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.3 MB
ENCFF151QED.bam bam (alignments); assembly: hg19; genome annotation: V19 3.7 GB
ENCFF152WLD.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 92.8 MB
ENCFF159RUM.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 82.3 MB
ENCFF165ZQY.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 6.1 GB
ENCFF169CKN.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.9 MB
ENCFF170SDI.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 89.0 MB
ENCFF180CIS.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 98.7 MB
ENCFF180ZQV.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 82.9 MB
ENCFF183OWW.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 6.1 GB
ENCFF196VVE.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 113.0 MB
ENCFF211VUF.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 95.7 MB
ENCFF214WHR.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 8.1 GB
ENCFF238SRC.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 102.3 MB
ENCFF247FBE.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 87.8 MB
ENCFF257CRM.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 94.6 MB
ENCFF260BAM.fastq fastq (reads) 2.7 GB
ENCFF261AFL.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 110.9 MB
ENCFF269JTR.fastq fastq (reads) 3.6 GB
ENCFF305YCS.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 95.9 MB
ENCFF318TSH.bam bam (alignments); assembly: GRCh38; genome annotation: V24 5.0 GB
ENCFF319AYU.fastq fastq (reads) 2.7 GB
ENCFF320HKG.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 96.9 MB
ENCFF340JVW.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 97.0 MB
ENCFF349KSU.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 88.5 MB
ENCFF363HPL.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 95.8 MB
ENCFF388NRG.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 86.6 MB
ENCFF392KVJ.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.4 MB
ENCFF417WJR.bam bam (alignments); assembly: hg19; genome annotation: V19 4.9 GB
ENCFF444OPE.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 103.0 MB
ENCFF450CBU.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 99.6 MB
ENCFF463FSB.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 4.3 MB
ENCFF470JFB.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 97.4 MB
ENCFF472TZC.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.9 MB
ENCFF473KIU.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 96.5 MB
ENCFF489HZX.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF489KGT.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 109.7 MB
ENCFF497UDR.bam bam (alignments); assembly: hg19; genome annotation: V19 4.5 GB
ENCFF516BIU.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 8.1 GB
ENCFF521BXO.bam bam (alignments); assembly: GRCh38; genome annotation: V24 6.2 GB
ENCFF548MLC.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 3.6 MB
ENCFF556XEJ.bam bam (alignments); assembly: hg19; genome annotation: V19 4.9 GB
ENCFF559RLO.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 83.8 MB
ENCFF565RIX.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 4.3 MB
ENCFF576VLK.bam bam (alignments); assembly: hg19; genome annotation: V19 6.0 GB
ENCFF594WTR.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 9.3 GB
ENCFF603HCO.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 101.0 MB
ENCFF604MXK.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 85.2 MB
ENCFF616EOI.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF637LXI.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 86.6 MB
ENCFF653JNG.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 86.6 MB
ENCFF663KGH.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 90.7 MB
ENCFF670KST.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.8 GB
ENCFF676XKU.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 111.6 MB
ENCFF686LXA.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 78.0 MB
ENCFF709UXZ.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 101.7 MB
ENCFF723SFE.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 16.6 MB
ENCFF730EQK.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF732YKN.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.5 MB
ENCFF764EQR.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF809DOT.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.8 MB
ENCFF813DDX.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 111.6 MB
ENCFF818YYR.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.5 MB
ENCFF823GVO.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 100.8 MB
ENCFF829EHH.bam bam (alignments); assembly: GRCh38; genome annotation: V29 4.7 GB
ENCFF852PSO.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 88.5 MB
ENCFF864UJH.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 6.9 GB
ENCFF883TCS.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 83.9 MB
ENCFF887KLE.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.7 GB
ENCFF894DCG.bam bam (alignments); assembly: hg19; genome annotation: V19 3.7 GB
ENCFF897MSG.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 95.3 MB
ENCFF922TRN.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 89.9 MB
ENCFF936MSA.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 101.7 MB
ENCFF937YMO.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 88.5 MB
ENCFF943YXV.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.4 MB
ENCFF961TMT.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 25.0 MB
ENCFF967JDE.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF973GFG.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF995CNO.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 79.9 MB
ENCFF998HLO.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 113.0 MB
ENCSR844QNT ENCSR · via encode_api

RNA-seq on K562 cells treated with an shRNA knockdown against PPP1R8. (PPP1R8_BGKLV28)

Homo sapiens

92 data files
FileTypeSize
ENCFF010GOR.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 95.6 MB
ENCFF043SFD.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 3.9 MB
ENCFF050YDG.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 7.9 GB
ENCFF061PZP.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.4 MB
ENCFF065IGH.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 81.7 MB
ENCFF068GZB.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 108.5 MB
ENCFF072CKB.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 76.6 MB
ENCFF074GEM.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 9.0 GB
ENCFF100BUG.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 79.0 MB
ENCFF112LDS.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 7.2 GB
ENCFF120OGL.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.4 MB
ENCFF121FQN.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 97.0 MB
ENCFF121YRO.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 111.1 MB
ENCFF129LMH.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 97.9 MB
ENCFF162RWU.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 92.3 MB
ENCFF165BUG.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 85.5 MB
ENCFF190TSC.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 78.7 MB
ENCFF191JPS.fastq fastq (reads) 3.7 GB
ENCFF202PRN.bam bam (alignments); assembly: GRCh38; genome annotation: V29 5.3 GB
ENCFF205XRN.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 86.8 MB
ENCFF222HKJ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 93.2 MB
ENCFF229RJC.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 87.7 MB
ENCFF233CWA.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 90.1 MB
ENCFF247DTZ.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 4.3 MB
ENCFF253YBH.bam bam (alignments); assembly: hg19; genome annotation: V19 4.2 GB
ENCFF286KKI.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 90.0 MB
ENCFF295CFK.bam bam (alignments); assembly: GRCh38; genome annotation: V24 6.6 GB
ENCFF308KKN.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 97.4 MB
ENCFF309XUM.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 109.6 MB
ENCFF310GRL.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 79.3 MB
ENCFF315XLK.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 99.1 MB
ENCFF338FCZ.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 97.3 MB
ENCFF339WFX.bam bam (alignments); assembly: GRCh38; genome annotation: V29 6.6 GB
ENCFF352MYR.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF375BSU.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 95.6 MB
ENCFF385YUD.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF401WBM.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 98.6 MB
ENCFF403NSJ.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.9 MB
ENCFF459VSO.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 111.4 MB
ENCFF472UYI.bam bam (alignments); assembly: GRCh38; genome annotation: V24 5.4 GB
ENCFF474TKZ.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 86.1 MB
ENCFF499WPA.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 16.3 MB
ENCFF501CCV.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 110.5 MB
ENCFF509CFM.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 87.7 MB
ENCFF520LTW.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 84.7 MB
ENCFF539KOW.fastq fastq (reads) 2.9 GB
ENCFF546IKF.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 99.9 MB
ENCFF557LLU.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.5 MB
ENCFF574OPN.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 7.9 GB
ENCFF576PSL.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 97.1 MB
ENCFF580JGE.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF583PFG.bam bam (alignments); assembly: hg19; genome annotation: V19 5.3 GB
ENCFF586KQE.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 83.1 MB
ENCFF619TPN.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 96.9 MB
ENCFF622XFZ.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 6.3 GB
ENCFF640HHS.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF662WGJ.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.5 MB
ENCFF677ZIS.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.3 GB
ENCFF679ENN.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 101.3 MB
ENCFF685QOK.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 98.6 MB
ENCFF700VIX.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.0 MB
ENCFF722AML.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 85.0 MB
ENCFF723QIE.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.4 MB
ENCFF727DHK.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 84.6 MB
ENCFF743GFT.bam bam (alignments); assembly: hg19; genome annotation: V19 5.3 GB
ENCFF788RLU.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.9 MB
ENCFF794RRI.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 85.2 MB
ENCFF812WMW.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 6.3 GB
ENCFF819LSM.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 25.0 MB
ENCFF820FCI.bam bam (alignments); assembly: hg19; genome annotation: V19 6.4 GB
ENCFF826FLR.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF835BVA.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.9 MB
ENCFF847PDS.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 5.6 MB
ENCFF848HPJ.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 97.0 MB
ENCFF851KQP.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 5.1 MB
ENCFF874URN.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 97.3 MB
ENCFF900YPJ.bam bam (alignments); assembly: hg19; genome annotation: V19 5.1 GB
ENCFF902AHB.bam bam (alignments); assembly: hg19; genome annotation: V19 4.2 GB
ENCFF903WCH.fastq fastq (reads) 2.9 GB
ENCFF906ITO.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 99.9 MB
ENCFF933YGM.bam bam (alignments); assembly: GRCh38; genome annotation: V24 5.3 GB
ENCFF953DWU.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.6 MB
ENCFF954KQK.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 87.2 MB
ENCFF958WFO.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 87.4 MB
ENCFF959CYF.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 109.3 MB
ENCFF964PID.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 98.6 MB
ENCFF964YSU.fastq fastq (reads) 3.7 GB
ENCFF972VCX.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 99.8 MB
ENCFF979FTI.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.4 MB
ENCFF980LKA.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 90.6 MB
ENCFF983WRC.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 89.2 MB
ENCFF987LEF.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 80.7 MB
ENCSR942MBU ENCSR · via encode_api

RNA-seq on HepG2 cells treated with an shRNA knockdown against ILF3. (ILF3-BGHLV22)

Homo sapiens

92 data files
FileTypeSize
ENCFF025XVH.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.7 MB
ENCFF043STV.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF044PXQ.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 69.1 MB
ENCFF066IJV.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 83.7 MB
ENCFF073SBH.bam bam (alignments); assembly: hg19; genome annotation: V19 4.6 GB
ENCFF075FML.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 15.6 MB
ENCFF075HHD.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 74.0 MB
ENCFF076FMM.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 76.3 MB
ENCFF088WND.fastq fastq (reads) 2.5 GB
ENCFF093WCZ.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 72.6 MB
ENCFF106OKS.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.9 MB
ENCFF112XJF.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 92.3 MB
ENCFF128HHJ.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF130TRW.bam bam (alignments); assembly: hg19; genome annotation: V19 3.9 GB
ENCFF130VCR.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 80.8 MB
ENCFF147CTT.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.4 MB
ENCFF157AHW.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF167UWD.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 79.7 MB
ENCFF169UQY.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 93.6 MB
ENCFF181KKC.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 72.3 MB
ENCFF183CND.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 75.8 MB
ENCFF205ZTO.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF207JEE.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 78.0 MB
ENCFF208NAZ.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 85.7 MB
ENCFF212JWY.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 78.1 MB
ENCFF216DJI.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 78.8 MB
ENCFF236FTP.bam bam (alignments); assembly: GRCh38; genome annotation: V29 4.8 GB
ENCFF237PXA.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 82.8 MB
ENCFF239IKF.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 83.1 MB
ENCFF254HRG.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 82.7 MB
ENCFF266DLZ.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 84.8 MB
ENCFF270CHC.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 86.1 MB
ENCFF276KYK.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 6.5 GB
ENCFF312CSD.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF326BPV.bam bam (alignments); assembly: GRCh38; genome annotation: V24 5.4 GB
ENCFF345MTW.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 78.2 MB
ENCFF356IZZ.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 82.3 MB
ENCFF356QWP.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 95.0 MB
ENCFF357RYS.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF359VJI.bam bam (alignments); assembly: GRCh38; genome annotation: V29 5.4 GB
ENCFF371PPP.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF381OAV.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 71.1 MB
ENCFF385HGW.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 75.7 MB
ENCFF399ALB.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 86.1 MB
ENCFF415JGN.bam bam (alignments); assembly: hg19; genome annotation: V19 4.4 GB
ENCFF431FPG.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 5.8 GB
ENCFF451OPE.fastq fastq (reads) 2.8 GB
ENCFF469YPT.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 78.1 MB
ENCFF480MHS.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 77.2 MB
ENCFF485RWH.bam bam (alignments); assembly: hg19; genome annotation: V19 5.2 GB
ENCFF494XDJ.bam bam (alignments); assembly: hg19; genome annotation: V19 4.4 GB
ENCFF505UGG.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 5.8 GB
ENCFF514YGG.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF519HRC.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 95.0 MB
ENCFF558UHE.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF560BGR.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 79.2 MB
ENCFF579RUY.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF583JAK.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 74.5 MB
ENCFF603VPF.bam bam (alignments); assembly: hg19; genome annotation: V19 3.9 GB
ENCFF623PXW.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 81.0 MB
ENCFF626YCX.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.9 MB
ENCFF627TZE.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 84.0 MB
ENCFF631USM.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 5.5 MB
ENCFF638JCM.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.8 GB
ENCFF645RES.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 87.4 MB
ENCFF648NPW.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 76.2 MB
ENCFF651ZVC.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 93.7 MB
ENCFF660ESF.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 83.8 MB
ENCFF676LWJ.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 84.8 MB
ENCFF692FND.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 85.1 MB
ENCFF693XAO.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 6.5 GB
ENCFF698VED.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.1 GB
ENCFF708PEQ.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 3.1 MB
ENCFF739TRW.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 78.2 MB
ENCFF775WKU.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 74.2 MB
ENCFF776LLC.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 84.8 MB
ENCFF777RSM.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF778QMB.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF788YXN.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 6.5 GB
ENCFF790YDV.fastq fastq (reads) 2.9 GB
ENCFF806XVA.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.3 MB
ENCFF829GVM.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 93.6 MB
ENCFF884YEA.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 76.2 MB
ENCFF902FPN.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.6 GB
ENCFF915NMF.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 4.3 MB
ENCFF921CLW.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 78.4 MB
ENCFF926IVJ.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 85.1 MB
ENCFF953DNR.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 84.9 MB
ENCFF972GDR.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 3.8 MB
ENCFF974UVM.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 7.3 GB
ENCFF976AGM.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 84.9 MB
ENCFF981UMN.fastq fastq (reads) 2.6 GB
ENCSR416ZAE ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) mock pulldown control experiment of SRSF10

1 data file
FileTypeSize
ENCFF208GAK.fastq fastq (reads) 311.7 MB
ENCSR152IWT ENCSR · via encode_api

RNA-seq on K562 cells treated with an shRNA knockdown against TRIP6. (TRIP6_BGKLV29)

Homo sapiens

92 data files
FileTypeSize
ENCFF004KGB.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 95.1 MB
ENCFF017PHK.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 9.1 GB
ENCFF029JFE.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 85.3 MB
ENCFF056SBH.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 78.0 MB
ENCFF056UJT.fastq fastq (reads) 2.6 GB
ENCFF071AID.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF080ECE.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 118.1 MB
ENCFF092YWL.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 101.4 MB
ENCFF102RFA.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 97.0 MB
ENCFF105JIW.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF115FQQ.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 87.0 MB
ENCFF117AJP.bam bam (alignments); assembly: hg19; genome annotation: V19 5.6 GB
ENCFF152VEB.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 116.9 MB
ENCFF163DCS.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.5 MB
ENCFF163FPA.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.9 MB
ENCFF172SRF.bam bam (alignments); assembly: GRCh38; genome annotation: V24 6.9 GB
ENCFF178FVA.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF187ZBP.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 115.5 MB
ENCFF195JQS.bam bam (alignments); assembly: hg19; genome annotation: V19 3.9 GB
ENCFF200LAP.bam bam (alignments); assembly: hg19; genome annotation: V19 6.7 GB
ENCFF213AQC.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.3 MB
ENCFF228QIE.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.5 MB
ENCFF231WCG.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 81.6 MB
ENCFF239VSX.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 77.0 MB
ENCFF240BUR.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 103.4 MB
ENCFF240GYQ.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 6.5 GB
ENCFF245ZCU.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 5.7 GB
ENCFF249QHV.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 94.0 MB
ENCFF258BVA.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 96.0 MB
ENCFF273GGP.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 95.1 MB
ENCFF278ZCF.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.9 MB
ENCFF317XFU.fastq fastq (reads) 3.8 GB
ENCFF327JPJ.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 5.6 GB
ENCFF331XOP.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 102.0 MB
ENCFF340WGL.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 16.0 MB
ENCFF341SZL.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 5.6 MB
ENCFF353VAC.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 102.2 MB
ENCFF360ZPG.fastq fastq (reads) 2.7 GB
ENCFF373BZJ.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 85.6 MB
ENCFF390NUN.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 104.5 MB
ENCFF396OWV.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.9 GB
ENCFF399AAH.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 83.6 MB
ENCFF402MEI.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.8 GB
ENCFF419LPB.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 3.9 MB
ENCFF429POD.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 97.6 MB
ENCFF447ZCU.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 83.0 MB
ENCFF467UKG.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 102.6 MB
ENCFF483BGX.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 103.1 MB
ENCFF484JEZ.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF494SWO.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.9 MB
ENCFF498WMG.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 84.0 MB
ENCFF502XTB.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 96.0 MB
ENCFF503PCE.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.4 MB
ENCFF523CZY.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 106.9 MB
ENCFF524UDY.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF529HVF.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 85.5 MB
ENCFF531RTE.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 95.0 MB
ENCFF557BIM.bam bam (alignments); assembly: hg19; genome annotation: V19 4.7 GB
ENCFF592EOU.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 8.0 GB
ENCFF598RBA.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 91.9 MB
ENCFF601DMJ.fastq fastq (reads) 3.8 GB
ENCFF602XVC.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF609ADO.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 103.9 MB
ENCFF618TKY.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 95.2 MB
ENCFF629IFG.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 84.9 MB
ENCFF631AZW.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF633ELM.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 4.8 MB
ENCFF635LAH.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 78.3 MB
ENCFF685JIX.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 7.9 GB
ENCFF690QFT.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 79.8 MB
ENCFF691IFY.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 82.9 MB
ENCFF693IQU.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF712KET.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 100.9 MB
ENCFF736CQH.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 116.9 MB
ENCFF736IJC.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 95.4 MB
ENCFF767IXP.bam bam (alignments); assembly: hg19; genome annotation: V19 3.9 GB
ENCFF769ELM.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.5 MB
ENCFF783DAM.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 75.1 MB
ENCFF815OFS.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 105.2 MB
ENCFF817DMB.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.8 MB
ENCFF822LNY.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 101.9 MB
ENCFF849AZH.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 84.6 MB
ENCFF851COV.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 114.3 MB
ENCFF859KBA.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 94.3 MB
ENCFF897ILX.bam bam (alignments); assembly: GRCh38; genome annotation: V29 4.8 GB
ENCFF899UNY.bam bam (alignments); assembly: GRCh38; genome annotation: V24 5.6 GB
ENCFF903UUL.bam bam (alignments); assembly: GRCh38; genome annotation: V29 6.9 GB
ENCFF908DLG.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 79.9 MB
ENCFF951ECB.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 85.7 MB
ENCFF973YGL.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 4.4 MB
ENCFF996PRR.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 118.1 MB
ENCFF999GIS.bam bam (alignments); assembly: hg19; genome annotation: V19 5.5 GB
ENCSR947JVR ENCSR · via encode_api

eCLIP experiment on K562 against DGCR8

Homo sapiens

36 data files
FileTypeSize
ENCFF015KTU.bigBed bigBed (peaks); assembly: hg19 1.3 MB
ENCFF023RGT.bam bam (alignments); assembly: GRCh38 184.2 MB
ENCFF023YVD.bed bed (peaks); assembly: GRCh38 29.2 KB
ENCFF077YUF.bigBed bigBed (peaks); assembly: GRCh38 325.9 KB
ENCFF141IID.bed bed (peaks); assembly: GRCh38 731.5 KB
ENCFF162KZD.fastq fastq (reads) 227.8 MB
ENCFF180COD.bigBed bigBed (peaks); assembly: hg19 649.6 KB
ENCFF205CTB.bed bed (peaks); assembly: GRCh38 130.7 KB
ENCFF239WCW.bed bed (peaks); assembly: hg19 29.1 KB
ENCFF264ODZ.bed bed (peaks); assembly: GRCh38 639.8 KB
ENCFF303NPB.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 10.3 MB
ENCFF311HEG.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 9.9 MB
ENCFF321LLR.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 10.2 MB
ENCFF349ZQI.bed bed (peaks); assembly: hg19 292.8 KB
ENCFF370UVC.fastq fastq (reads) 212.0 MB
ENCFF402WTV.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 10.1 MB
ENCFF472DEV.bigBed bigBed (peaks); assembly: hg19 1.4 MB
ENCFF491LUG.bam bam (alignments); assembly: hg19 173.9 MB
ENCFF555GID.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 10.5 MB
ENCFF601RGF.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 10.6 MB
ENCFF614EMY.bam bam (alignments); assembly: hg19 184.8 MB
ENCFF642UGL.bigBed bigBed (peaks); assembly: hg19 732.4 KB
ENCFF682SYA.bigBed bigBed (peaks); assembly: GRCh38 1.3 MB
ENCFF712GUN.bed bed (peaks); assembly: GRCh38 111.3 KB
ENCFF719GZA.bigBed bigBed (peaks); assembly: GRCh38 1.2 MB
ENCFF721GOR.bigBed bigBed (peaks); assembly: GRCh38 361.0 KB
ENCFF735UHA.bed bed (peaks); assembly: hg19 641.3 KB
ENCFF752RAX.bigBed bigBed (peaks); assembly: hg19 1.2 MB
ENCFF799FTL.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 9.9 MB
ENCFF799XKD.bigBed bigBed (peaks); assembly: hg19 1.1 MB
ENCFF843HDQ.bam bam (alignments); assembly: GRCh38 173.1 MB
ENCFF864HVZ.bed bed (peaks); assembly: hg19 343.0 KB
ENCFF887LSX.bed bed (peaks); assembly: hg19 730.6 KB
ENCFF905DBX.fastq fastq (reads) 250.4 MB
ENCFF945ITD.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 10.1 MB
ENCFF969KXX.fastq fastq (reads) 197.9 MB
ENCSR757IDL ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) mock pulldown control experiment of MSI1

1 data file
FileTypeSize
ENCFF928YLI.fastq fastq (reads) 368.1 MB
ENCSR410ZPU ENCSR · via encode_api

shRNA knockdown against BCLAF1 in K562 cells followed by RNA-seq. (BCLAF1_BGKLV19)

Homo sapiens

92 data files
FileTypeSize
ENCFF046KFI.fastq fastq (reads) 2.4 GB
ENCFF053BPH.tsv tsv (transcript quantifications) 25.3 MB
ENCFF061ZBQ.bigWig bigWig (plus strand signal of all reads) 87.1 MB
ENCFF086DTK.bam bam (alignments) 4.1 GB
ENCFF086XHX.bam bam (alignments) 4.0 GB
ENCFF087KQA.bigWig bigWig (minus strand signal of unique reads) 71.1 MB
ENCFF093XQJ.bigWig bigWig (minus strand signal of unique reads) 71.5 MB
ENCFF120HYH.tsv tsv (differential expression quantifications) 4.3 MB
ENCFF127SYF.bigWig bigWig (plus strand signal of unique reads) 86.8 MB
ENCFF147NAG.bam bam (alignments) 3.5 GB
ENCFF152QZU.bigWig bigWig (plus strand signal of unique reads) 81.1 MB
ENCFF158MRE.tsv tsv (transcript quantifications) 27.3 MB
ENCFF162YUW.bigWig bigWig (minus strand signal of all reads) 84.5 MB
ENCFF167OKM.bam bam (transcriptome alignments) 5.4 GB
ENCFF183JGZ.fastq fastq (reads) 2.6 GB
ENCFF195XHA.bam bam (alignments) 3.9 GB
ENCFF200ZIK.bigWig bigWig (minus strand signal of all reads) 95.6 MB
ENCFF209ERP.tar tar (differential splicing quantifications) 4.2 MB
ENCFF211FPQ.bigWig bigWig (plus strand signal of unique reads) 86.8 MB
ENCFF218HFU.bigWig bigWig (minus strand signal of unique reads) 76.1 MB
ENCFF227NSU.bam bam (transcriptome alignments) 5.4 GB
ENCFF230XOT.bigWig bigWig (plus strand signal of all reads) 87.3 MB
ENCFF232QZC.tsv tsv (gene quantifications) 10.4 MB
ENCFF236DSU.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF236KHH.bigWig bigWig (plus strand signal of all reads) 75.8 MB
ENCFF237CTS.bigWig bigWig (plus strand signal of unique reads) 73.0 MB
ENCFF240RRZ.bigWig bigWig (minus strand signal of unique reads) 76.0 MB
ENCFF262NGX.bigWig bigWig (plus strand signal of unique reads) 76.9 MB
ENCFF272QPR.bigWig bigWig (plus strand signal of unique reads) 81.4 MB
ENCFF281KPV.bam bam (transcriptome alignments) 4.7 GB
ENCFF288KRJ.bam bam (alignments) 3.9 GB
ENCFF352VZY.bigWig bigWig (plus strand signal of all reads) 79.7 MB
ENCFF357FWY.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF360KJZ.bigWig bigWig (plus strand signal of unique reads) 78.4 MB
ENCFF363FYN.bigWig bigWig (minus strand signal of unique reads) 84.7 MB
ENCFF367XSO.tsv tsv (transcript quantifications) 29.8 MB
ENCFF386TZR.bigWig bigWig (plus strand signal of all reads) 96.9 MB
ENCFF422UDF.tar tar (differential splicing quantifications) 15.3 MB
ENCFF431ROM.tsv tsv (transcript quantifications) 27.4 MB
ENCFF440QAR.tsv tsv (gene quantifications) 10.4 MB
ENCFF448EQG.bigWig bigWig (plus strand signal of all reads) 78.2 MB
ENCFF454EAO.bigWig bigWig (minus strand signal of all reads) 77.2 MB
ENCFF459EMB.bigWig bigWig (minus strand signal of unique reads) 79.3 MB
ENCFF462NSJ.bam bam (alignments) 4.8 GB
ENCFF511YTJ.bigWig bigWig (minus strand signal of all reads) 94.7 MB
ENCFF515ZJV.bigWig bigWig (plus strand signal of all reads) 85.7 MB
ENCFF531JAK.bam bam (transcriptome alignments) 4.7 GB
ENCFF546ZNN.tsv tsv (gene quantifications) 9.1 MB
ENCFF569QDO.bigWig bigWig (minus strand signal of all reads) 85.9 MB
ENCFF569XTW.tsv tsv (gene quantifications) 9.1 MB
ENCFF577HWK.bam bam (alignments) 4.1 GB
ENCFF582SZC.bigWig bigWig (minus strand signal of unique reads) 79.2 MB
ENCFF584PBL.bigWig bigWig (plus strand signal of unique reads) 73.0 MB
ENCFF600AKA.tar tar (differential splicing quantifications) 3.5 MB
ENCFF615WSL.bam bam (alignments) 3.4 GB
ENCFF615XXS.tsv tsv (gene quantifications) 9.4 MB
ENCFF620XWX.bigWig bigWig (minus strand signal of unique reads) 83.6 MB
ENCFF625TSK.bigWig bigWig (plus strand signal of all reads) 87.3 MB
ENCFF645MDI.bigWig bigWig (plus strand signal of unique reads) 85.7 MB
ENCFF648TWK.bigWig bigWig (minus strand signal of all reads) 86.1 MB
ENCFF667FRE.tsv tsv (transcript quantifications) 24.8 MB
ENCFF678BPZ.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF693MRN.bigWig bigWig (plus strand signal of all reads) 96.1 MB
ENCFF712LII.bigWig bigWig (minus strand signal of all reads) 86.1 MB
ENCFF730YVK.bam bam (alignments) 4.0 GB
ENCFF733RRH.bam bam (transcriptome alignments) 5.3 GB
ENCFF743JCC.tsv tsv (transcript quantifications) 25.3 MB
ENCFF777BRA.bam bam (transcriptome alignments) 6.1 GB
ENCFF782CYY.bigWig bigWig (minus strand signal of all reads) 87.2 MB
ENCFF796LOT.bigWig bigWig (minus strand signal of all reads) 95.6 MB
ENCFF818HQP.tsv tsv (differential expression quantifications) 1.8 MB
ENCFF819CZN.bigWig bigWig (minus strand signal of all reads) 78.3 MB
ENCFF834MXA.tsv tsv (transcript quantifications) 29.8 MB
ENCFF839PTB.bigWig bigWig (minus strand signal of all reads) 82.1 MB
ENCFF843GEP.bigWig bigWig (minus strand signal of unique reads) 75.0 MB
ENCFF846KRQ.bigWig bigWig (minus strand signal of all reads) 74.2 MB
ENCFF848IQL.bigWig bigWig (plus strand signal of all reads) 83.7 MB
ENCFF849PVW.bigWig bigWig (plus strand signal of all reads) 97.0 MB
ENCFF860NWB.bam bam (alignments) 3.4 GB
ENCFF862PZJ.bigWig bigWig (minus strand signal of unique reads) 76.0 MB
ENCFF905KNH.tsv tsv (gene quantifications) 9.4 MB
ENCFF905SIR.bigWig bigWig (plus strand signal of all reads) 88.8 MB
ENCFF914ZNE.tsv tsv (transcript quantifications) 24.9 MB
ENCFF924GFD.fastq fastq (reads) 2.2 GB
ENCFF925DZT.bigWig bigWig (plus strand signal of unique reads) 70.0 MB
ENCFF925PAH.bigWig bigWig (minus strand signal of unique reads) 84.6 MB
ENCFF947XAS.bigWig bigWig (plus strand signal of unique reads) 77.8 MB
ENCFF957PJD.fastq fastq (reads) 2.1 GB
ENCFF959AOH.bam bam (alignments) 4.8 GB
ENCFF964TWU.bigWig bigWig (minus strand signal of unique reads) 68.0 MB
ENCFF972MHA.bigWig bigWig (plus strand signal of unique reads) 77.8 MB
ENCFF993BRZ.bam bam (alignments) 4.6 GB
ENCSR330KHN ENCSR · via encode_api

RNA-seq on HepG2 cells treated with an shRNA knockdown against RBM22. (RBM22_BGHLV37)

Homo sapiens

92 data files
FileTypeSize
ENCFF026PKC.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 3.0 MB
ENCFF027TTR.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 104.2 MB
ENCFF030OLZ.bam bam (alignments); assembly: hg19; genome annotation: V19 5.4 GB
ENCFF034EKP.bam bam (alignments); assembly: GRCh38; genome annotation: V29 5.9 GB
ENCFF037ALK.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 101.2 MB
ENCFF038EHT.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF047KDX.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 7.5 GB
ENCFF049MMN.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 104.7 MB
ENCFF051INT.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.7 GB
ENCFF057MTL.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 86.3 MB
ENCFF059MHG.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 113.2 MB
ENCFF060GDE.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 95.0 MB
ENCFF064YRF.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 5.5 GB
ENCFF093UUV.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 94.3 MB
ENCFF103BIV.fastq fastq (reads) 2.2 GB
ENCFF116KTR.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 128.3 MB
ENCFF129YYF.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 109.6 MB
ENCFF131FUZ.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF144WRK.fastq fastq (reads) 3.1 GB
ENCFF165GUZ.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF175ZDU.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 111.0 MB
ENCFF183RZB.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 97.4 MB
ENCFF207VZI.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 105.5 MB
ENCFF218FQG.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 89.1 MB
ENCFF225UCU.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 6.5 GB
ENCFF226VJI.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.0 MB
ENCFF228YIY.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 102.9 MB
ENCFF246AKQ.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF281MXR.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 125.4 MB
ENCFF291NKP.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF296VXO.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 122.7 MB
ENCFF307JNO.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 5.6 MB
ENCFF322GOD.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 112.2 MB
ENCFF350RIC.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 128.3 MB
ENCFF369NEZ.bam bam (alignments); assembly: hg19; genome annotation: V19 3.9 GB
ENCFF390UJF.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF399VHL.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 84.7 MB
ENCFF409BOE.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF411VKL.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.4 MB
ENCFF418ZTW.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF427AZY.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF438SLU.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 104.7 MB
ENCFF444HUW.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 114.4 MB
ENCFF452UTT.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 114.6 MB
ENCFF465QTD.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 4.8 GB
ENCFF472GOP.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 95.0 MB
ENCFF472TON.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 92.0 MB
ENCFF475XDR.bam bam (alignments); assembly: hg19; genome annotation: V19 3.2 GB
ENCFF486XZL.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 94.4 MB
ENCFF495USF.fastq fastq (reads) 3.0 GB
ENCFF524JJT.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.5 MB
ENCFF527RQI.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 91.7 MB
ENCFF532VWT.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 5.4 MB
ENCFF551YSY.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 92.2 MB
ENCFF557HSG.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.1 GB
ENCFF580ZYM.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.5 MB
ENCFF608RJT.bam bam (alignments); assembly: GRCh38; genome annotation: V24 5.9 GB
ENCFF631PIK.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.7 MB
ENCFF640VCX.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 18.3 MB
ENCFF651VGX.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 85.7 MB
ENCFF652KVG.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 111.2 MB
ENCFF657HAH.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 89.6 MB
ENCFF657PCX.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF664VTL.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 115.9 MB
ENCFF670LAF.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 105.1 MB
ENCFF675OWS.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 4.8 GB
ENCFF676DPD.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 125.2 MB
ENCFF729XTQ.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 102.3 MB
ENCFF735TME.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 102.9 MB
ENCFF768GAH.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 4.6 MB
ENCFF768VAQ.bam bam (alignments); assembly: GRCh38; genome annotation: V29 4.1 GB
ENCFF776RHY.bam bam (alignments); assembly: hg19; genome annotation: V19 4.5 GB
ENCFF778TZK.bam bam (alignments); assembly: hg19; genome annotation: V19 3.2 GB
ENCFF785LQT.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 105.1 MB
ENCFF803UKG.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 91.6 MB
ENCFF823OOV.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 4.0 MB
ENCFF829UZA.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 92.0 MB
ENCFF830GFR.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 114.8 MB
ENCFF830YJW.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 95.1 MB
ENCFF848GTK.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 110.7 MB
ENCFF853SPZ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 109.1 MB
ENCFF885CHG.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 125.5 MB
ENCFF889UQA.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 108.2 MB
ENCFF891ULQ.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 6.6 GB
ENCFF905OMV.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.3 GB
ENCFF925AQH.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 82.1 MB
ENCFF927ZBN.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 115.1 MB
ENCFF958PTR.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 88.4 MB
ENCFF963QGU.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 117.3 MB
ENCFF965ZCJ.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF986CJT.fastq fastq (reads) 2.2 GB
ENCFF991DPE.bam bam (alignments); assembly: hg19; genome annotation: V19 4.5 GB
ENCSR005ZRL ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) pulldown experiment against DAZAP1

13 data files
FileTypeSize
ENCFF102BFN.tsv tsv (enrichment) 41.0 KB
ENCFF156RLV.tsv tsv (enrichment) 168.0 KB
ENCFF159FNQ.fastq fastq (reads) 498.0 MB
ENCFF190ZRO.tsv tsv (enrichment) 688.0 KB
ENCFF387GNF.fastq fastq (reads) 209.8 MB
ENCFF548LGA.fastq fastq (reads) 559.8 MB
ENCFF668HCA.tsv tsv (library fraction) 15.3 KB
ENCFF738COE.tsv tsv (library fraction) 1.1 MB
ENCFF756ZGX.tsv tsv (enrichment) 10.0 KB
ENCFF766DOA.fastq fastq (reads) 349.7 MB
ENCFF867JXH.tsv tsv (library fraction) 264.9 KB
ENCFF884UAX.tsv tsv (library fraction) 64.0 KB
ENCFF887GOK.fastq fastq (reads) 185.6 MB
ENCSR520BZQ ENCSR · via encode_api

eCLIP experiment on K562 against HNRNPU

Homo sapiens

36 data files
FileTypeSize
ENCFF014BXV.bed bed (peaks); assembly: hg19 4.4 MB
ENCFF016LPW.bigBed bigBed (peaks); assembly: GRCh38 7.7 MB
ENCFF025YVA.bam bam (alignments); assembly: GRCh38 1.0 GB
ENCFF046DNV.bigBed bigBed (peaks); assembly: hg19 2.3 MB
ENCFF089LNF.fastq fastq (reads) 706.3 MB
ENCFF145GGH.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 50.7 MB
ENCFF145OZZ.fastq fastq (reads) 1.3 GB
ENCFF197OBL.bam bam (alignments); assembly: GRCh38 1.5 GB
ENCFF235IOB.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 53.3 MB
ENCFF241DVU.bed bed (peaks); assembly: GRCh38 4.8 KB
ENCFF253HOY.fastq fastq (reads) 718.0 MB
ENCFF260RZZ.bigBed bigBed (peaks); assembly: hg19 1.3 MB
ENCFF274WHB.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 78.8 MB
ENCFF342RVP.bigBed bigBed (peaks); assembly: GRCh38 569.0 KB
ENCFF382TQQ.bigBed bigBed (peaks); assembly: hg19 9.5 MB
ENCFF384LLO.fastq fastq (reads) 1.2 GB
ENCFF408HQB.bed bed (peaks); assembly: GRCh38 4.5 MB
ENCFF439LWC.bam bam (alignments); assembly: hg19 1.5 GB
ENCFF451BJT.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 79.1 MB
ENCFF464SKW.bed bed (peaks); assembly: GRCh38 220.8 KB
ENCFF465SHB.bed bed (peaks); assembly: hg19 630.8 KB
ENCFF496BVF.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 75.2 MB
ENCFF588ALN.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 53.4 MB
ENCFF638WUB.bed bed (peaks); assembly: GRCh38 5.8 MB
ENCFF701SGQ.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 50.6 MB
ENCFF755NIP.bigBed bigBed (peaks); assembly: hg19 7.6 MB
ENCFF759QAQ.bed bed (peaks); assembly: GRCh38 222.4 KB
ENCFF824KTJ.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 75.1 MB
ENCFF844VZT.bed bed (peaks); assembly: hg19 4.9 KB
ENCFF868OFV.bigBed bigBed (peaks); assembly: hg19 1.2 MB
ENCFF881JZG.bam bam (alignments); assembly: hg19 1.0 GB
ENCFF886MQH.bigBed bigBed (peaks); assembly: GRCh38 575.9 KB
ENCFF895OXA.bed bed (peaks); assembly: hg19 608.2 KB
ENCFF901WKP.bigBed bigBed (peaks); assembly: GRCh38 9.6 MB
ENCFF911FOB.bigBed bigBed (peaks); assembly: hg19 2.1 MB
ENCFF960NDY.bed bed (peaks); assembly: hg19 5.8 MB
ENCSR827QYL ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) pulldown experiment against TAF15

13 data files
FileTypeSize
ENCFF032XJW.fastq fastq (reads) 425.5 MB
ENCFF093XSA.bed bed (peaks) 40.1 KB
ENCFF194JNW.tsv tsv (enrichment) 60.0 KB
ENCFF206DZS.fastq fastq (reads) 468.2 MB
ENCFF302LUJ.tsv tsv (library fraction) 17.8 KB
ENCFF304HMY.fastq fastq (reads) 601.0 MB
ENCFF429MTP.tsv tsv (library fraction) 312.9 KB
ENCFF632XWC.tsv tsv (enrichment) 14.8 KB
ENCFF662TOD.fastq fastq (reads) 393.3 MB
ENCFF686CWM.fastq fastq (reads) 565.4 MB
ENCFF737RQL.tsv tsv (library fraction) 75.3 KB
ENCFF796QEY.tsv tsv (enrichment) 244.0 KB
ENCFF937RMQ.bed bed (peaks) 52.1 KB
ENCSR456KXI ENCSR · via encode_api

eCLIP experiment on K562 against LARP7

Homo sapiens

36 data files
FileTypeSize
ENCFF017NRG.bed bed (peaks); assembly: hg19 240.1 KB
ENCFF047ETM.bigBed bigBed (peaks); assembly: GRCh38 354.1 KB
ENCFF058MZF.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 2.9 MB
ENCFF076BAY.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 2.0 MB
ENCFF120VKU.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 3.0 MB
ENCFF133LPV.bigBed bigBed (peaks); assembly: hg19 521.4 KB
ENCFF177KVZ.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 2.0 MB
ENCFF179RTO.bed bed (peaks); assembly: hg19 188.6 KB
ENCFF208AAW.bed bed (peaks); assembly: hg19 136.2 KB
ENCFF256RGM.fastq fastq (reads) 329.7 MB
ENCFF287TBP.bed bed (peaks); assembly: GRCh38 60.3 KB
ENCFF293MFX.bigBed bigBed (peaks); assembly: hg19 451.1 KB
ENCFF305BNZ.bed bed (peaks); assembly: hg19 6.1 KB
ENCFF320ING.bigBed bigBed (peaks); assembly: hg19 807.2 KB
ENCFF323MGS.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 2.2 MB
ENCFF327HGP.fastq fastq (reads) 291.0 MB
ENCFF467VWG.bed bed (peaks); assembly: GRCh38 84.7 KB
ENCFF473ESV.bam bam (alignments); assembly: hg19 64.3 MB
ENCFF476QFX.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 2.8 MB
ENCFF476VSU.bam bam (alignments); assembly: GRCh38 50.0 MB
ENCFF507XTS.bigBed bigBed (peaks); assembly: GRCh38 272.3 KB
ENCFF530RLZ.bigBed bigBed (peaks); assembly: hg19 623.7 KB
ENCFF572IJY.bed bed (peaks); assembly: GRCh38 237.1 KB
ENCFF585YVJ.bigBed bigBed (peaks); assembly: GRCh38 516.2 KB
ENCFF604LEG.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 2.2 MB
ENCFF668ETU.bed bed (peaks); assembly: hg19 119.5 KB
ENCFF672QZX.bigBed bigBed (peaks); assembly: hg19 354.2 KB
ENCFF733YZJ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 3.0 MB
ENCFF803VTZ.fastq fastq (reads) 301.8 MB
ENCFF809CKN.bed bed (peaks); assembly: GRCh38 6.2 KB
ENCFF828HOK.bigBed bigBed (peaks); assembly: GRCh38 223.7 KB
ENCFF863HRM.bam bam (alignments); assembly: GRCh38 63.4 MB
ENCFF905YHV.fastq fastq (reads) 269.7 MB
ENCFF918NSS.bam bam (alignments); assembly: hg19 50.2 MB
ENCFF960ILE.bed bed (peaks); assembly: GRCh38 135.8 KB
ENCFF976DNA.bigBed bigBed (peaks); assembly: hg19 331.3 KB
ENCSR454KYR ENCSR · via encode_api

RNA-seq on K562 cells treated with an shRNA knockdown against SF3A3. (SF3A3_BGKLV34)

Homo sapiens

92 data files
FileTypeSize
ENCFF012IBL.bigWig bigWig (minus strand signal of unique reads) 85.8 MB
ENCFF045FGO.bigWig bigWig (minus strand signal of all reads) 94.0 MB
ENCFF049TIJ.bigWig bigWig (plus strand signal of all reads) 131.7 MB
ENCFF053VNM.bigWig bigWig (minus strand signal of all reads) 113.1 MB
ENCFF062VLJ.bigWig bigWig (plus strand signal of all reads) 101.9 MB
ENCFF072XLX.bigWig bigWig (plus strand signal of all reads) 114.4 MB
ENCFF086LIJ.tsv tsv (gene quantifications) 9.5 MB
ENCFF110FPI.bigWig bigWig (plus strand signal of all reads) 131.7 MB
ENCFF114BMK.bigWig bigWig (plus strand signal of all reads) 112.5 MB
ENCFF146DST.tsv tsv (transcript quantifications) 29.8 MB
ENCFF168UCM.bam bam (alignments) 5.7 GB
ENCFF169EDN.bigWig bigWig (plus strand signal of unique reads) 92.9 MB
ENCFF178MQD.tar tar (differential splicing quantifications) 5.8 MB
ENCFF184IVX.bigWig bigWig (plus strand signal of unique reads) 116.6 MB
ENCFF205BUX.bigWig bigWig (plus strand signal of all reads) 98.9 MB
ENCFF212YLO.bam bam (alignments) 5.9 GB
ENCFF237ATA.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF254ACG.tsv tsv (transcript quantifications) 25.3 MB
ENCFF263VTK.bigWig bigWig (minus strand signal of unique reads) 104.7 MB
ENCFF269UYX.bam bam (transcriptome alignments) 9.3 GB
ENCFF285BEK.bam bam (transcriptome alignments) 8.1 GB
ENCFF316ENI.fastq fastq (reads) 3.2 GB
ENCFF319HLX.bam bam (alignments) 5.9 GB
ENCFF324GAE.bigWig bigWig (minus strand signal of all reads) 128.6 MB
ENCFF325VMJ.fastq fastq (reads) 4.0 GB
ENCFF326ZRM.bam bam (transcriptome alignments) 7.3 GB
ENCFF333QVH.bigWig bigWig (minus strand signal of unique reads) 90.7 MB
ENCFF334TNY.tsv tsv (transcript quantifications) 29.9 MB
ENCFF336LWW.bigWig bigWig (plus strand signal of all reads) 95.6 MB
ENCFF350FTR.bam bam (alignments) 4.7 GB
ENCFF358TVW.bigWig bigWig (minus strand signal of unique reads) 98.5 MB
ENCFF359DVT.tsv tsv (gene quantifications) 9.1 MB
ENCFF365ODW.bigWig bigWig (minus strand signal of all reads) 112.5 MB
ENCFF400XST.bigWig bigWig (minus strand signal of unique reads) 98.7 MB
ENCFF417BGH.bam bam (transcriptome alignments) 8.2 GB
ENCFF436UXQ.bigWig bigWig (plus strand signal of unique reads) 92.9 MB
ENCFF450IDP.tsv tsv (transcript quantifications) 27.5 MB
ENCFF455GAT.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF458CUI.bigWig bigWig (plus strand signal of all reads) 113.8 MB
ENCFF497AVE.bigWig bigWig (minus strand signal of all reads) 116.8 MB
ENCFF509MNE.tsv tsv (gene quantifications) 9.1 MB
ENCFF510YQJ.bigWig bigWig (minus strand signal of all reads) 100.2 MB
ENCFF521IXZ.bigWig bigWig (plus strand signal of all reads) 112.3 MB
ENCFF525AAA.bigWig bigWig (minus strand signal of unique reads) 102.1 MB
ENCFF525OMT.bigWig bigWig (plus strand signal of unique reads) 117.1 MB
ENCFF533SIN.bam bam (alignments) 7.3 GB
ENCFF555VXW.bam bam (alignments) 5.9 GB
ENCFF557BRC.bam bam (alignments) 7.1 GB
ENCFF561JTG.bigWig bigWig (minus strand signal of unique reads) 97.9 MB
ENCFF566CSH.fastq fastq (reads) 3.1 GB
ENCFF581RJN.tar tar (differential splicing quantifications) 16.7 MB
ENCFF598RVO.bigWig bigWig (minus strand signal of all reads) 97.8 MB
ENCFF602LHB.bigWig bigWig (minus strand signal of unique reads) 114.1 MB
ENCFF613YRX.bam bam (transcriptome alignments) 6.4 GB
ENCFF619XCF.tsv tsv (differential expression quantifications) 2.0 MB
ENCFF631VPA.bam bam (transcriptome alignments) 6.5 GB
ENCFF655PEC.bigWig bigWig (plus strand signal of unique reads) 116.6 MB
ENCFF671ZTN.bigWig bigWig (minus strand signal of all reads) 130.2 MB
ENCFF689QMD.bigWig bigWig (plus strand signal of all reads) 118.7 MB
ENCFF709ZFQ.tsv tsv (transcript quantifications) 27.5 MB
ENCFF715OFU.bigWig bigWig (plus strand signal of unique reads) 100.1 MB
ENCFF717QGX.tar tar (differential splicing quantifications) 4.7 MB
ENCFF728CZK.tsv tsv (gene quantifications) 9.5 MB
ENCFF733OAS.bigWig bigWig (plus strand signal of unique reads) 104.7 MB
ENCFF737ZHI.tsv tsv (transcript quantifications) 24.9 MB
ENCFF755GLH.bigWig bigWig (plus strand signal of all reads) 130.1 MB
ENCFF764AWD.bigWig bigWig (plus strand signal of unique reads) 100.9 MB
ENCFF784AKJ.tsv tsv (gene quantifications) 10.4 MB
ENCFF797JMF.bam bam (alignments) 6.0 GB
ENCFF804JTF.bigWig bigWig (minus strand signal of unique reads) 91.0 MB
ENCFF812RDS.tsv tsv (gene quantifications) 10.4 MB
ENCFF818PGA.fastq fastq (reads) 3.9 GB
ENCFF830HCV.bigWig bigWig (plus strand signal of unique reads) 108.9 MB
ENCFF834LHY.bigWig bigWig (minus strand signal of all reads) 110.9 MB
ENCFF836RII.bigWig bigWig (plus strand signal of all reads) 113.8 MB
ENCFF839PQL.bam bam (alignments) 4.7 GB
ENCFF870LVR.bam bam (alignments) 7.3 GB
ENCFF873OIB.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF884WQA.tsv tsv (transcript quantifications) 25.3 MB
ENCFF891RQK.bam bam (alignments) 4.8 GB
ENCFF904XVK.bigWig bigWig (plus strand signal of unique reads) 106.8 MB
ENCFF910NLG.bigWig bigWig (minus strand signal of all reads) 110.6 MB
ENCFF912JIE.tsv tsv (differential expression quantifications) 4.5 MB
ENCFF924XIP.bigWig bigWig (minus strand signal of all reads) 112.5 MB
ENCFF954HCA.bigWig bigWig (minus strand signal of unique reads) 114.1 MB
ENCFF955NPR.bigWig bigWig (plus strand signal of unique reads) 88.2 MB
ENCFF962OIP.tsv tsv (transcript quantifications) 24.9 MB
ENCFF963ZBW.bigWig bigWig (minus strand signal of unique reads) 114.4 MB
ENCFF975HRR.bigWig bigWig (minus strand signal of all reads) 130.2 MB
ENCFF980HGG.bigWig bigWig (minus strand signal of unique reads) 106.2 MB
ENCFF985AVG.bam bam (alignments) 5.9 GB
ENCFF995HKS.bigWig bigWig (plus strand signal of unique reads) 100.9 MB
ENCSR164TLB ENCSR · via encode_api

RNA-seq on K562 cells treated with an shRNA knockdown against ADAR. (ADAR_BGKLV24)

Homo sapiens

92 data files
FileTypeSize
ENCFF021JJH.bigWig bigWig (plus strand signal of all reads) 54.8 MB
ENCFF024LGB.tsv tsv (gene quantifications) 10.4 MB
ENCFF030CEO.bam bam (alignments) 3.0 GB
ENCFF046EWT.bam bam (alignments) 2.7 GB
ENCFF059CBR.bam bam (alignments) 2.7 GB
ENCFF061LDE.bam bam (transcriptome alignments) 3.9 GB
ENCFF074EPG.tsv tsv (transcript quantifications) 29.8 MB
ENCFF085DKT.fastq fastq (reads) 1.5 GB
ENCFF093ZYA.fastq fastq (reads) 1.7 GB
ENCFF100UWE.bigWig bigWig (plus strand signal of all reads) 57.5 MB
ENCFF119VNR.bigWig bigWig (plus strand signal of all reads) 71.9 MB
ENCFF136QTJ.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF147LRH.bigWig bigWig (plus strand signal of unique reads) 57.2 MB
ENCFF148CSQ.bam bam (alignments) 2.6 GB
ENCFF149FDL.bigWig bigWig (plus strand signal of unique reads) 57.8 MB
ENCFF172TRK.bigWig bigWig (minus strand signal of unique reads) 61.9 MB
ENCFF181NOJ.bigWig bigWig (minus strand signal of unique reads) 63.3 MB
ENCFF203KZZ.bigWig bigWig (minus strand signal of all reads) 56.9 MB
ENCFF212QRC.bigWig bigWig (plus strand signal of unique reads) 51.1 MB
ENCFF243CXC.bigWig bigWig (minus strand signal of unique reads) 49.7 MB
ENCFF258RAF.bigWig bigWig (plus strand signal of unique reads) 60.7 MB
ENCFF260SPB.tsv tsv (transcript quantifications) 27.3 MB
ENCFF268DUK.bigWig bigWig (plus strand signal of all reads) 72.9 MB
ENCFF270SDV.bigWig bigWig (minus strand signal of all reads) 60.4 MB
ENCFF275ZUE.bigWig bigWig (plus strand signal of unique reads) 54.9 MB
ENCFF280EPA.tsv tsv (gene quantifications) 9.4 MB
ENCFF290UVY.tsv tsv (gene quantifications) 9.1 MB
ENCFF296UJK.bigWig bigWig (minus strand signal of unique reads) 59.2 MB
ENCFF305BRJ.bigWig bigWig (minus strand signal of all reads) 64.4 MB
ENCFF312UTP.bigWig bigWig (plus strand signal of all reads) 61.4 MB
ENCFF316LXJ.tsv tsv (transcript quantifications) 24.8 MB
ENCFF325PRL.bigWig bigWig (plus strand signal of all reads) 65.1 MB
ENCFF325ZEH.bigWig bigWig (plus strand signal of unique reads) 64.7 MB
ENCFF334NZI.tsv tsv (gene quantifications) 9.1 MB
ENCFF349NHY.bigWig bigWig (minus strand signal of all reads) 64.3 MB
ENCFF360VPO.bigWig bigWig (minus strand signal of all reads) 64.3 MB
ENCFF363WII.bam bam (transcriptome alignments) 3.7 GB
ENCFF373UAZ.bam bam (alignments) 3.2 GB
ENCFF375RZP.fastq fastq (reads) 1.9 GB
ENCFF375WXK.tsv tsv (transcript quantifications) 27.1 MB
ENCFF405HEL.bigWig bigWig (plus strand signal of unique reads) 57.9 MB
ENCFF406LQK.bigWig bigWig (minus strand signal of all reads) 58.0 MB
ENCFF415BGD.bam bam (alignments) 3.2 GB
ENCFF435NKG.tsv tsv (differential expression quantifications) 1.8 MB
ENCFF446HMN.tsv tsv (transcript quantifications) 25.3 MB
ENCFF450ROR.bam bam (transcriptome alignments) 3.4 GB
ENCFF470JNG.bigWig bigWig (plus strand signal of all reads) 65.1 MB
ENCFF481HQN.bigWig bigWig (plus strand signal of unique reads) 60.6 MB
ENCFF491YNO.bigWig bigWig (minus strand signal of all reads) 64.2 MB
ENCFF521ZRR.tsv tsv (transcript quantifications) 24.9 MB
ENCFF524YQW.bam bam (alignments) 2.6 GB
ENCFF534IQA.fastq fastq (reads) 1.7 GB
ENCFF536QTZ.bigWig bigWig (minus strand signal of unique reads) 56.4 MB
ENCFF554GYW.bigWig bigWig (plus strand signal of all reads) 64.0 MB
ENCFF566MIF.bigWig bigWig (minus strand signal of unique reads) 53.5 MB
ENCFF568QXU.tsv tsv (differential expression quantifications) 4.1 MB
ENCFF592SPR.bigWig bigWig (minus strand signal of all reads) 72.2 MB
ENCFF594IYB.bigWig bigWig (plus strand signal of unique reads) 64.1 MB
ENCFF597QAQ.tsv tsv (differential expression quantifications) 5.5 MB
ENCFF637MHU.tsv tsv (gene quantifications) 10.4 MB
ENCFF649DEK.bigWig bigWig (minus strand signal of all reads) 71.1 MB
ENCFF652JNJ.bigWig bigWig (plus strand signal of all reads) 64.9 MB
ENCFF661JPX.bigWig bigWig (minus strand signal of unique reads) 52.9 MB
ENCFF677VYF.bigWig bigWig (minus strand signal of unique reads) 56.5 MB
ENCFF683GND.bigWig bigWig (plus strand signal of all reads) 65.5 MB
ENCFF707KBS.bam bam (transcriptome alignments) 4.1 GB
ENCFF739KUG.tar tar (differential splicing quantifications) 2.9 MB
ENCFF753PES.bigWig bigWig (minus strand signal of unique reads) 62.7 MB
ENCFF760MQA.bigWig bigWig (plus strand signal of unique reads) 54.0 MB
ENCFF776SMV.bigWig bigWig (minus strand signal of all reads) 53.9 MB
ENCFF781RKY.bam bam (alignments) 2.7 GB
ENCFF786PWT.tsv tsv (transcript quantifications) 29.8 MB
ENCFF796QSJ.tsv tsv (transcript quantifications) 25.3 MB
ENCFF806PEV.tsv tsv (gene quantifications) 9.4 MB
ENCFF815LWV.bigWig bigWig (minus strand signal of unique reads) 56.4 MB
ENCFF820DLC.bam bam (alignments) 2.6 GB
ENCFF832HFQ.bam bam (transcriptome alignments) 3.7 GB
ENCFF842IYY.bigWig bigWig (minus strand signal of all reads) 63.1 MB
ENCFF859EIR.bigWig bigWig (minus strand signal of unique reads) 55.7 MB
ENCFF868LLC.bigWig bigWig (minus strand signal of unique reads) 59.4 MB
ENCFF877QES.bam bam (alignments) 3.1 GB
ENCFF892LMI.tsv tsv (differential expression quantifications) 2.7 MB
ENCFF895RBR.tar tar (differential splicing quantifications) 3.2 MB
ENCFF902PEJ.bigWig bigWig (plus strand signal of unique reads) 57.9 MB
ENCFF904GRD.bigWig bigWig (plus strand signal of all reads) 72.9 MB
ENCFF932PXX.bigWig bigWig (plus strand signal of all reads) 58.9 MB
ENCFF938BYX.tar tar (differential splicing quantifications) 12.5 MB
ENCFF963DHX.bigWig bigWig (plus strand signal of unique reads) 63.4 MB
ENCFF964PFC.bam bam (transcriptome alignments) 3.5 GB
ENCFF970EWF.bigWig bigWig (minus strand signal of all reads) 72.2 MB
ENCFF973BAQ.bam bam (alignments) 3.2 GB
ENCFF991PNX.bam bam (alignments) 3.1 GB
ENCSR070LJO ENCSR · via encode_api

shRNA knockdown against DDX1 in HepG2 cells followed by RNA-seq. (DDX1-BGHLV20)

Homo sapiens

92 data files
FileTypeSize
ENCFF014IAL.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 64.3 MB
ENCFF020RBZ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 59.1 MB
ENCFF026JMM.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 71.8 MB
ENCFF027NKV.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 62.2 MB
ENCFF037TVI.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 63.2 MB
ENCFF048ICW.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 60.0 MB
ENCFF055GMV.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.3 MB
ENCFF057FUX.fastq fastq (reads) 2.1 GB
ENCFF074XFO.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 70.3 MB
ENCFF085XBF.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.2 GB
ENCFF124XRR.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.9 GB
ENCFF127UML.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 57.8 MB
ENCFF140AKL.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.8 MB
ENCFF145ANC.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF147AWN.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 60.8 MB
ENCFF160RUE.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF164ITS.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 5.1 GB
ENCFF185BCO.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF190SVH.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.0 MB
ENCFF191SQG.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 59.5 MB
ENCFF194PTJ.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF216HKN.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 68.7 MB
ENCFF217IQU.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 62.2 MB
ENCFF222ZYH.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF228PZO.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 71.1 MB
ENCFF235ZID.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 65.4 MB
ENCFF267BDM.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 64.2 MB
ENCFF273ZWV.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 59.1 MB
ENCFF278TTC.bam bam (alignments); assembly: GRCh38; genome annotation: V29 3.9 GB
ENCFF310TES.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 58.7 MB
ENCFF317FFN.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 70.8 MB
ENCFF329HMR.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF339ASF.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF350DFN.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.6 GB
ENCFF370CXX.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 62.3 MB
ENCFF392WOM.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 69.3 MB
ENCFF394VFC.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 63.4 MB
ENCFF406GFS.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 57.0 MB
ENCFF417YPV.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 57.3 MB
ENCFF419GJU.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 55.2 MB
ENCFF421OUW.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 65.7 MB
ENCFF425EBC.fastq fastq (reads) 2.3 GB
ENCFF433TVJ.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 69.3 MB
ENCFF486ESG.fastq fastq (reads) 2.2 GB
ENCFF516CJR.bam bam (alignments); assembly: hg19; genome annotation: V19 3.6 GB
ENCFF520BDN.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.3 MB
ENCFF537SES.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 4.4 GB
ENCFF558YUM.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 14.8 MB
ENCFF559WSX.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF562PGS.bam bam (alignments); assembly: hg19; genome annotation: V19 3.2 GB
ENCFF567DVF.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 5.5 MB
ENCFF579BYJ.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 62.9 MB
ENCFF587RBT.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 70.2 MB
ENCFF621DGU.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 70.8 MB
ENCFF629RYG.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF630XZD.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 70.1 MB
ENCFF638GKI.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 2.8 MB
ENCFF648DMI.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF651QBM.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 62.4 MB
ENCFF656FRS.bam bam (alignments); assembly: hg19; genome annotation: V19 3.6 GB
ENCFF658CEY.bam bam (alignments); assembly: GRCh38; genome annotation: V29 4.2 GB
ENCFF664GGR.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 5.1 GB
ENCFF666GFH.bam bam (alignments); assembly: hg19; genome annotation: V19 3.2 GB
ENCFF686MOG.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 61.6 MB
ENCFF702VUG.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF712GXK.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 4.9 GB
ENCFF723YQB.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 65.6 MB
ENCFF727IBQ.bam bam (alignments); assembly: hg19; genome annotation: V19 4.1 GB
ENCFF747FAX.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 59.2 MB
ENCFF760MQV.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.3 GB
ENCFF776FYV.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 5.7 GB
ENCFF788NSN.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 65.3 MB
ENCFF790KXR.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF793RVS.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 63.8 MB
ENCFF825KPY.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 71.7 MB
ENCFF848IFD.fastq fastq (reads) 1.9 GB
ENCFF861KIV.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 64.3 MB
ENCFF861MEJ.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 63.9 MB
ENCFF865OWM.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 69.7 MB
ENCFF872JBI.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 4.4 GB
ENCFF881AIO.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 59.2 MB
ENCFF902WUX.bam bam (alignments); assembly: hg19; genome annotation: V19 3.7 GB
ENCFF910DWO.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 53.3 MB
ENCFF913CTC.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.7 MB
ENCFF928QPS.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 64.2 MB
ENCFF930GCA.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 61.4 MB
ENCFF939KQN.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 4.2 MB
ENCFF951SMS.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 61.3 MB
ENCFF953CVD.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 60.9 MB
ENCFF973MAA.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 57.2 MB
ENCFF995SLQ.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 63.7 MB
ENCFF998AUP.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 3.3 MB
ENCSR529JNJ ENCSR · via encode_api

shRNA knockdown against HNRNPK in K562 cells followed by RNA-seq. (HNRNPK-LV11)

Homo sapiens

92 data files
FileTypeSize
ENCFF018ADD.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 103.7 MB
ENCFF028WKS.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 82.5 MB
ENCFF057EXH.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF062FRY.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 84.5 MB
ENCFF078EEB.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF094TME.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 90.7 MB
ENCFF111JLA.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 90.5 MB
ENCFF125ETJ.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 5.1 GB
ENCFF130OJM.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.5 MB
ENCFF144TZT.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 113.0 MB
ENCFF151LLO.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 4.8 GB
ENCFF167GZM.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.4 MB
ENCFF176NCA.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF181REZ.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 90.5 MB
ENCFF182NTA.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 3.0 MB
ENCFF187WJT.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.0 GB
ENCFF191YVK.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 103.7 MB
ENCFF197NJR.bam bam (alignments); assembly: hg19; genome annotation: V19 3.3 GB
ENCFF203MVY.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF204ZOH.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 83.8 MB
ENCFF256KAL.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 4.3 GB
ENCFF267HGR.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 101.1 MB
ENCFF267TVR.fastq fastq (reads) 2.3 GB
ENCFF270RJY.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 97.6 MB
ENCFF278MAD.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 89.4 MB
ENCFF287NHH.bam bam (alignments); assembly: hg19; genome annotation: V19 2.9 GB
ENCFF290JVM.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 80.8 MB
ENCFF296SGL.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 113.0 MB
ENCFF302NUO.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 104.8 MB
ENCFF311FSB.bam bam (alignments); assembly: GRCh38; genome annotation: V29 4.0 GB
ENCFF317YDL.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 92.5 MB
ENCFF322IOX.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 94.4 MB
ENCFF338EWF.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.7 MB
ENCFF355YPR.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF357ATM.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.9 MB
ENCFF386QVN.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 105.1 MB
ENCFF397ATR.bam bam (alignments); assembly: hg19; genome annotation: V19 2.9 GB
ENCFF429RTY.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 92.5 MB
ENCFF435IDY.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 83.1 MB
ENCFF446RSF.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 90.2 MB
ENCFF447WTH.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 98.7 MB
ENCFF519LDN.bam bam (alignments); assembly: hg19; genome annotation: V19 4.3 GB
ENCFF523ENZ.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 111.6 MB
ENCFF527KUQ.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 5.4 MB
ENCFF527VLO.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 91.4 MB
ENCFF545VYO.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.0 GB
ENCFF547GFH.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 15.1 MB
ENCFF553THU.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 3.5 MB
ENCFF581ULB.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 100.0 MB
ENCFF589PRH.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 86.2 MB
ENCFF612SSR.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 89.9 MB
ENCFF640IJS.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 4.2 GB
ENCFF640RRH.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 111.6 MB
ENCFF676DWV.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 84.8 MB
ENCFF678CMJ.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 4.3 MB
ENCFF680IGK.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 96.3 MB
ENCFF685RMM.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 103.5 MB
ENCFF710LAN.fastq fastq (reads) 2.4 GB
ENCFF712KCP.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF712WIM.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 98.6 MB
ENCFF731AGE.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 92.1 MB
ENCFF749TNP.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 98.7 MB
ENCFF755ABO.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.4 MB
ENCFF757KYW.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 4.1 MB
ENCFF765IMX.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF772QMN.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 4.8 GB
ENCFF778ITU.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 86.4 MB
ENCFF808LWD.bam bam (alignments); assembly: hg19; genome annotation: V19 3.8 GB
ENCFF817WNK.fastq fastq (reads) 2.0 GB
ENCFF818NBD.bam bam (alignments); assembly: hg19; genome annotation: V19 3.3 GB
ENCFF836QDE.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.4 GB
ENCFF847KRL.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 91.6 MB
ENCFF848IVB.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 78.5 MB
ENCFF850UNO.bam bam (alignments); assembly: GRCh38; genome annotation: V29 4.5 GB
ENCFF854TBL.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 112.0 MB
ENCFF855LBA.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF863TRG.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 85.4 MB
ENCFF887ZBF.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 110.6 MB
ENCFF888VCR.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 90.0 MB
ENCFF891PMN.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 97.7 MB
ENCFF900YES.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF905RIG.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 96.9 MB
ENCFF908LFZ.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF915WUU.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.5 GB
ENCFF921ICZ.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 105.0 MB
ENCFF939IYJ.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 90.2 MB
ENCFF945QZV.fastq fastq (reads) 2.1 GB
ENCFF959DJA.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 101.2 MB
ENCFF984MMV.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 5.7 GB
ENCFF986AVX.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 92.3 MB
ENCFF991SAZ.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF997EWJ.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 92.7 MB
ENCSR030GZQ ENCSR · via encode_api

shRNA knockdown against TRA2A in HepG2 cells followed by RNA-seq. (TRA2A BGHLV14)

Homo sapiens

92 data files
FileTypeSize
ENCFF019BSO.bigWig bigWig (minus strand signal of all reads) 71.1 MB
ENCFF019UZV.bam bam (alignments) 3.1 GB
ENCFF053QYH.bigWig bigWig (minus strand signal of all reads) 68.2 MB
ENCFF077XLJ.bigWig bigWig (plus strand signal of all reads) 72.4 MB
ENCFF088XUV.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF092WDQ.bigWig bigWig (minus strand signal of all reads) 77.9 MB
ENCFF096UDC.bigWig bigWig (plus strand signal of all reads) 77.7 MB
ENCFF099KTB.tsv tsv (gene quantifications) 10.4 MB
ENCFF124TYJ.bigWig bigWig (minus strand signal of unique reads) 64.3 MB
ENCFF127AFR.bam bam (transcriptome alignments) 5.1 GB
ENCFF136QCU.tsv tsv (differential expression quantifications) 1.8 MB
ENCFF169RJQ.bam bam (alignments) 3.2 GB
ENCFF174ARK.bigWig bigWig (minus strand signal of all reads) 68.4 MB
ENCFF191HEF.bigWig bigWig (plus strand signal of unique reads) 62.5 MB
ENCFF197BWP.bam bam (transcriptome alignments) 4.5 GB
ENCFF197EFK.bigWig bigWig (plus strand signal of all reads) 73.6 MB
ENCFF213FUK.bigWig bigWig (minus strand signal of unique reads) 69.8 MB
ENCFF230ZQS.bigWig bigWig (plus strand signal of all reads) 75.7 MB
ENCFF238VWL.bigWig bigWig (minus strand signal of unique reads) 70.2 MB
ENCFF244EEA.bigWig bigWig (minus strand signal of unique reads) 66.8 MB
ENCFF248PND.bigWig bigWig (minus strand signal of unique reads) 70.2 MB
ENCFF262NKQ.bigWig bigWig (minus strand signal of all reads) 72.1 MB
ENCFF268BVC.bam bam (transcriptome alignments) 4.9 GB
ENCFF279HFF.bigWig bigWig (minus strand signal of unique reads) 64.3 MB
ENCFF307NOS.fastq fastq (reads) 2.0 GB
ENCFF312LOH.bam bam (transcriptome alignments) 4.9 GB
ENCFF314VFV.tar tar (differential splicing quantifications) 15.3 MB
ENCFF317DIS.bigWig bigWig (plus strand signal of unique reads) 68.8 MB
ENCFF328SIX.bigWig bigWig (plus strand signal of all reads) 79.2 MB
ENCFF328TTZ.bigWig bigWig (minus strand signal of all reads) 77.8 MB
ENCFF346RFC.bigWig bigWig (minus strand signal of all reads) 74.5 MB
ENCFF348AYS.tsv tsv (gene quantifications) 9.4 MB
ENCFF350OGT.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF381KLS.tar tar (differential splicing quantifications) 3.5 MB
ENCFF383VTK.bigWig bigWig (plus strand signal of all reads) 69.6 MB
ENCFF385QOH.bam bam (alignments) 3.7 GB
ENCFF401DYD.tsv tsv (gene quantifications) 9.1 MB
ENCFF421BEG.bigWig bigWig (minus strand signal of all reads) 75.6 MB
ENCFF431NNW.bam bam (transcriptome alignments) 5.5 GB
ENCFF435XXT.tsv tsv (transcript quantifications) 29.8 MB
ENCFF450GBZ.bigWig bigWig (minus strand signal of unique reads) 63.3 MB
ENCFF459BTW.tsv tsv (gene quantifications) 9.1 MB
ENCFF472QFP.bigWig bigWig (plus strand signal of all reads) 70.7 MB
ENCFF498ZYP.bigWig bigWig (plus strand signal of all reads) 79.2 MB
ENCFF506OLL.bam bam (alignments) 4.0 GB
ENCFF515TSN.bigWig bigWig (plus strand signal of unique reads) 72.0 MB
ENCFF562DVO.bigWig bigWig (plus strand signal of unique reads) 69.2 MB
ENCFF566AJR.bam bam (transcriptome alignments) 4.5 GB
ENCFF577KLS.bigWig bigWig (plus strand signal of unique reads) 65.2 MB
ENCFF578EXH.bam bam (alignments) 3.1 GB
ENCFF593MYQ.bam bam (alignments) 3.3 GB
ENCFF599SBB.bigWig bigWig (plus strand signal of all reads) 77.0 MB
ENCFF599WMX.fastq fastq (reads) 2.2 GB
ENCFF613NZW.tsv tsv (gene quantifications) 10.4 MB
ENCFF617NHY.tsv tsv (transcript quantifications) 24.9 MB
ENCFF618USF.tsv tsv (transcript quantifications) 27.3 MB
ENCFF630OWG.bam bam (alignments) 3.8 GB
ENCFF644FZX.bam bam (alignments) 3.8 GB
ENCFF656KMS.tar tar (differential splicing quantifications) 2.9 MB
ENCFF667KJG.tsv tsv (transcript quantifications) 25.3 MB
ENCFF670SQS.fastq fastq (reads) 2.2 GB
ENCFF673REK.bigWig bigWig (minus strand signal of all reads) 69.2 MB
ENCFF683BUD.bigWig bigWig (plus strand signal of unique reads) 69.7 MB
ENCFF704BEF.bigWig bigWig (minus strand signal of all reads) 64.9 MB
ENCFF712XAP.bam bam (alignments) 3.3 GB
ENCFF715DUT.tsv tsv (transcript quantifications) 25.3 MB
ENCFF720SSH.bigWig bigWig (minus strand signal of all reads) 76.6 MB
ENCFF726VRR.bigWig bigWig (minus strand signal of unique reads) 67.5 MB
ENCFF728UZB.bigWig bigWig (plus strand signal of all reads) 66.3 MB
ENCFF733SMG.tsv tsv (gene quantifications) 9.4 MB
ENCFF740EWQ.bigWig bigWig (minus strand signal of unique reads) 67.9 MB
ENCFF749MTQ.bigWig bigWig (plus strand signal of all reads) 77.0 MB
ENCFF752VCS.tsv tsv (transcript quantifications) 29.8 MB
ENCFF771TRQ.bam bam (alignments) 4.0 GB
ENCFF784CJA.bigWig bigWig (minus strand signal of unique reads) 60.7 MB
ENCFF797XTC.bigWig bigWig (plus strand signal of all reads) 69.7 MB
ENCFF808UZU.fastq fastq (reads) 2.1 GB
ENCFF819SUH.bigWig bigWig (plus strand signal of unique reads) 65.8 MB
ENCFF823STI.bam bam (alignments) 3.3 GB
ENCFF825ZLW.tsv tsv (differential expression quantifications) 4.2 MB
ENCFF850NXT.bigWig bigWig (plus strand signal of unique reads) 66.1 MB
ENCFF853XFW.bigWig bigWig (minus strand signal of unique reads) 67.2 MB
ENCFF856TTJ.tsv tsv (transcript quantifications) 24.9 MB
ENCFF861PQZ.bigWig bigWig (minus strand signal of all reads) 75.6 MB
ENCFF867SSH.bigWig bigWig (plus strand signal of unique reads) 68.4 MB
ENCFF888JQH.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF908GEM.bam bam (alignments) 3.9 GB
ENCFF911XCU.bigWig bigWig (plus strand signal of unique reads) 69.0 MB
ENCFF934EOC.tsv tsv (transcript quantifications) 27.2 MB
ENCFF935NRM.bigWig bigWig (plus strand signal of unique reads) 72.0 MB
ENCFF964DHA.bigWig bigWig (plus strand signal of unique reads) 71.6 MB
ENCFF970ENR.bigWig bigWig (minus strand signal of unique reads) 67.1 MB
ENCSR916XIV ENCSR · via encode_api

eCLIP experiment on HepG2 against EIF3H

Homo sapiens

28 data files
FileTypeSize
ENCFF017NSD.bigWig bigWig (minus strand signal of unique reads) 13.2 MB
ENCFF105SXR.fastq fastq (reads) 671.4 MB
ENCFF135UVS.bam bam (alignments) 211.3 MB
ENCFF146VOH.fastq fastq (reads) 680.1 MB
ENCFF187KFJ.bigBed bigBed (peaks) 3.1 MB
ENCFF218UKP.bigBed bigBed (peaks) 2.1 MB
ENCFF280DFG.bigWig bigWig (plus strand signal of unique reads) 11.7 MB
ENCFF321VYR.bam bam (alignments) 239.6 MB
ENCFF346JBJ.bed bed (peaks) 676.8 KB
ENCFF408PDH.fastq fastq (reads) 653.7 MB
ENCFF430TTF.bigWig bigWig (minus strand signal of unique reads) 11.4 MB
ENCFF479MEO.bigWig bigWig (minus strand signal of unique reads) 13.0 MB
ENCFF487ANP.bigBed bigBed (peaks) 3.1 MB
ENCFF556DEY.bed bed (peaks) 1.5 MB
ENCFF560ZPH.bigWig bigWig (plus strand signal of unique reads) 13.6 MB
ENCFF582LGR.bed bed (peaks) 1.3 MB
ENCFF623SYZ.bed bed (peaks) 1.2 MB
ENCFF633VCU.bigBed bigBed (peaks) 2.1 MB
ENCFF663JWC.bed bed (peaks) 1.1 MB
ENCFF730RYG.bigWig bigWig (plus strand signal of unique reads) 13.4 MB
ENCFF770FPA.bed bed (peaks) 1.5 MB
ENCFF810ZZO.bam bam (alignments) 233.0 MB
ENCFF813JIK.bed bed (peaks) 62.7 KB
ENCFF815GWX.bam bam (alignments) 206.0 MB
ENCFF834HXI.fastq fastq (reads) 680.0 MB
ENCFF860NZS.bigWig bigWig (minus strand signal of unique reads) 11.3 MB
ENCFF862XXR.bigWig bigWig (plus strand signal of unique reads) 11.5 MB
ENCFF928OEC.bed bed (peaks) 63.8 KB
ENCSR526XUZ ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) mock pulldown control experiment of hnRNPH2

1 data file
FileTypeSize
ENCFF242LBP.fastq fastq (reads) 381.5 MB
ENCSR277DEO ENCSR · via encode_api

eCLIP experiment on HepG2 against NKRF

Homo sapiens

36 data files
FileTypeSize
ENCFF045HSV.bed bed (peaks) 83.1 KB
ENCFF061DTB.bed bed (peaks) 81.5 KB
ENCFF073IXT.bed bed (peaks) 235.6 KB
ENCFF100HIX.bigBed bigBed (peaks) 2.2 MB
ENCFF114ZIN.bed bed (peaks) 700.9 KB
ENCFF143UPB.bigWig bigWig (minus strand signal of unique reads) 22.2 MB
ENCFF144QQC.bam bam (alignments) 739.9 MB
ENCFF150MWZ.bed bed (peaks) 243.9 KB
ENCFF187KJR.bigBed bigBed (peaks) 1.4 MB
ENCFF201DEF.bigBed bigBed (peaks) 1.4 MB
ENCFF233SNH.bed bed (peaks) 3.3 MB
ENCFF250JMP.bigWig bigWig (plus strand signal of unique reads) 22.5 MB
ENCFF271UEZ.bigBed bigBed (peaks) 6.1 MB
ENCFF329YGA.bigBed bigBed (peaks) 622.7 KB
ENCFF391WTM.bam bam (alignments) 425.0 MB
ENCFF430JKC.fastq fastq (reads) 805.2 MB
ENCFF432EVC.bed bed (peaks) 3.3 MB
ENCFF470VYY.bam bam (alignments) 766.2 MB
ENCFF508JRE.bigBed bigBed (peaks) 4.3 MB
ENCFF558SOA.fastq fastq (reads) 819.6 MB
ENCFF623DUI.bed bed (peaks) 2.2 MB
ENCFF660VTK.fastq fastq (reads) 835.6 MB
ENCFF661HMQ.fastq fastq (reads) 790.1 MB
ENCFF668QFJ.bigWig bigWig (plus strand signal of unique reads) 23.6 MB
ENCFF669IOB.bigWig bigWig (minus strand signal of unique reads) 35.3 MB
ENCFF736CTI.bigWig bigWig (minus strand signal of unique reads) 34.5 MB
ENCFF761WJQ.bigBed bigBed (peaks) 617.0 KB
ENCFF781TYW.bigBed bigBed (peaks) 4.2 MB
ENCFF825FWR.bam bam (alignments) 441.7 MB
ENCFF858QEP.bigWig bigWig (plus strand signal of unique reads) 36.6 MB
ENCFF864UGQ.bed bed (peaks) 2.2 MB
ENCFF902GSY.bigBed bigBed (peaks) 6.1 MB
ENCFF930FSZ.bigWig bigWig (minus strand signal of unique reads) 21.4 MB
ENCFF938VWT.bed bed (peaks) 671.6 KB
ENCFF947TZX.bigBed bigBed (peaks) 2.2 MB
ENCFF998EUA.bigWig bigWig (plus strand signal of unique reads) 35.6 MB
ENCSR830BSQ ENCSR · via encode_api

eCLIP experiment on HepG2 against BUD13

Homo sapiens

36 data files
FileTypeSize
ENCFF008SOW.bed bed (peaks) 1.1 MB
ENCFF011NAP.bed bed (peaks) 96.8 KB
ENCFF080PGT.bed bed (peaks) 95.8 KB
ENCFF094VWE.bam bam (alignments) 424.7 MB
ENCFF128RBT.bigWig bigWig (plus strand signal of unique reads) 21.1 MB
ENCFF180OLE.bigWig bigWig (minus strand signal of unique reads) 20.3 MB
ENCFF201ZNG.fastq fastq (reads) 845.8 MB
ENCFF248UTB.bigWig bigWig (plus strand signal of unique reads) 21.6 MB
ENCFF272PCV.bed bed (peaks) 1.4 MB
ENCFF277VUW.bigBed bigBed (peaks) 1.1 MB
ENCFF306KVJ.bigBed bigBed (peaks) 2.9 MB
ENCFF350ICY.bigBed bigBed (peaks) 2.2 MB
ENCFF357WBG.bigBed bigBed (peaks) 4.1 MB
ENCFF363NIE.fastq fastq (reads) 811.2 MB
ENCFF364QPG.bed bed (peaks) 2.1 MB
ENCFF380EPE.bigWig bigWig (plus strand signal of unique reads) 22.3 MB
ENCFF399DJZ.bed bed (peaks) 2.1 MB
ENCFF425ASC.bed bed (peaks) 309.8 KB
ENCFF536HGU.bam bam (alignments) 430.3 MB
ENCFF554MZA.bigWig bigWig (minus strand signal of unique reads) 20.8 MB
ENCFF592BEM.bam bam (alignments) 450.8 MB
ENCFF644DWW.bam bam (alignments) 410.5 MB
ENCFF648INU.bigBed bigBed (peaks) 5.1 MB
ENCFF783TZW.bigWig bigWig (minus strand signal of unique reads) 21.0 MB
ENCFF785FUO.bed bed (peaks) 2.1 MB
ENCFF793PYD.fastq fastq (reads) 794.9 MB
ENCFF798IHQ.bigBed bigBed (peaks) 4.1 MB
ENCFF798KOB.bigBed bigBed (peaks) 4.2 MB
ENCFF867ZBM.bigWig bigWig (minus strand signal of unique reads) 21.7 MB
ENCFF893NYT.bigWig bigWig (plus strand signal of unique reads) 21.6 MB
ENCFF913PHX.bed bed (peaks) 469.9 KB
ENCFF918HTG.fastq fastq (reads) 865.2 MB
ENCFF929ITC.bed bed (peaks) 2.1 MB
ENCFF948ZQP.bigBed bigBed (peaks) 4.2 MB
ENCFF950QAW.bigBed bigBed (peaks) 784.7 KB
ENCFF999JJE.bigBed bigBed (peaks) 3.4 MB
ENCSR485ZTC ENCSR · via encode_api

shRNA knockdown against DDX21 in HepG2 cells followed by RNA-seq. (DDX21 BGHLV14)

Homo sapiens

92 data files
FileTypeSize
ENCFF008NPI.bigWig bigWig (minus strand signal of unique reads) 76.7 MB
ENCFF019XCA.bigWig bigWig (minus strand signal of all reads) 81.6 MB
ENCFF026VLT.bam bam (alignments) 4.1 GB
ENCFF028DZC.bigWig bigWig (minus strand signal of unique reads) 72.4 MB
ENCFF029FTN.bigWig bigWig (plus strand signal of unique reads) 74.8 MB
ENCFF043LAA.bam bam (transcriptome alignments) 5.6 GB
ENCFF060PHP.bigWig bigWig (minus strand signal of unique reads) 79.8 MB
ENCFF069MNE.bigWig bigWig (plus strand signal of unique reads) 82.2 MB
ENCFF075HLG.bam bam (transcriptome alignments) 5.0 GB
ENCFF104TXI.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF118HPN.tar tar (differential splicing quantifications) 3.1 MB
ENCFF126ING.bigWig bigWig (plus strand signal of unique reads) 77.7 MB
ENCFF133XVF.tsv tsv (gene quantifications) 10.4 MB
ENCFF143BTE.tsv tsv (transcript quantifications) 25.3 MB
ENCFF147NKX.tsv tsv (transcript quantifications) 27.3 MB
ENCFF185OBO.bigWig bigWig (minus strand signal of unique reads) 76.0 MB
ENCFF195KVQ.tsv tsv (gene quantifications) 9.1 MB
ENCFF203UZF.tsv tsv (gene quantifications) 9.4 MB
ENCFF210SFN.bigWig bigWig (plus strand signal of unique reads) 78.3 MB
ENCFF219WMK.bam bam (transcriptome alignments) 5.1 GB
ENCFF242TSY.bigWig bigWig (plus strand signal of all reads) 85.0 MB
ENCFF254QUD.bigWig bigWig (minus strand signal of unique reads) 68.3 MB
ENCFF276ZGA.bam bam (alignments) 3.5 GB
ENCFF285NTT.tsv tsv (gene quantifications) 10.4 MB
ENCFF287HIK.bigWig bigWig (minus strand signal of all reads) 78.6 MB
ENCFF296NAD.fastq fastq (reads) 2.3 GB
ENCFF303SPT.tsv tsv (transcript quantifications) 27.4 MB
ENCFF319OCR.bigWig bigWig (plus strand signal of unique reads) 78.9 MB
ENCFF319XTZ.tsv tsv (transcript quantifications) 25.3 MB
ENCFF331YSJ.bigWig bigWig (plus strand signal of all reads) 83.4 MB
ENCFF332RXE.bam bam (alignments) 3.9 GB
ENCFF345SSL.tsv tsv (transcript quantifications) 24.9 MB
ENCFF348ZWF.bigWig bigWig (minus strand signal of unique reads) 80.3 MB
ENCFF353AYA.tsv tsv (transcript quantifications) 24.9 MB
ENCFF359XJR.bigWig bigWig (plus strand signal of all reads) 77.6 MB
ENCFF366MKM.bam bam (alignments) 3.6 GB
ENCFF373AHS.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF375BKS.bigWig bigWig (minus strand signal of unique reads) 79.8 MB
ENCFF380HWQ.tsv tsv (gene quantifications) 9.4 MB
ENCFF382AHH.bigWig bigWig (plus strand signal of all reads) 79.8 MB
ENCFF385RFZ.fastq fastq (reads) 2.3 GB
ENCFF419TNF.bam bam (alignments) 3.3 GB
ENCFF424VQJ.tar tar (differential splicing quantifications) 3.6 MB
ENCFF425EXX.bigWig bigWig (minus strand signal of unique reads) 75.5 MB
ENCFF428IWR.tsv tsv (differential expression quantifications) 3.0 MB
ENCFF440XIS.bam bam (alignments) 3.4 GB
ENCFF442FMB.bigWig bigWig (plus strand signal of unique reads) 82.7 MB
ENCFF446FFC.bigWig bigWig (plus strand signal of all reads) 90.3 MB
ENCFF453TKE.tsv tsv (differential expression quantifications) 4.4 MB
ENCFF456DIQ.bigWig bigWig (plus strand signal of all reads) 84.6 MB
ENCFF460SIM.bigWig bigWig (minus strand signal of unique reads) 76.3 MB
ENCFF465UVW.bam bam (alignments) 4.3 GB
ENCFF489KXA.bigWig bigWig (minus strand signal of all reads) 88.2 MB
ENCFF505JKG.bigWig bigWig (minus strand signal of all reads) 76.0 MB
ENCFF507SLV.bigWig bigWig (minus strand signal of all reads) 88.6 MB
ENCFF538ZTF.fastq fastq (reads) 2.2 GB
ENCFF547MOZ.bigWig bigWig (minus strand signal of all reads) 78.0 MB
ENCFF547WEN.bigWig bigWig (plus strand signal of unique reads) 82.2 MB
ENCFF567IGO.bigWig bigWig (plus strand signal of all reads) 85.2 MB
ENCFF599LTX.bam bam (transcriptome alignments) 5.2 GB
ENCFF611VQH.tsv tsv (transcript quantifications) 29.8 MB
ENCFF620ODB.bam bam (alignments) 3.5 GB
ENCFF642FRS.bigWig bigWig (minus strand signal of unique reads) 72.9 MB
ENCFF656GZR.bam bam (transcriptome alignments) 5.8 GB
ENCFF693YXD.bigWig bigWig (plus strand signal of unique reads) 70.7 MB
ENCFF704IOS.bigWig bigWig (plus strand signal of all reads) 80.6 MB
ENCFF728FPV.tar tar (differential splicing quantifications) 15.0 MB
ENCFF778ISC.bigWig bigWig (plus strand signal of unique reads) 78.2 MB
ENCFF780VOO.bigWig bigWig (plus strand signal of unique reads) 75.2 MB
ENCFF783BQE.fastq fastq (reads) 2.2 GB
ENCFF785PHX.bam bam (alignments) 4.3 GB
ENCFF789YBU.bigWig bigWig (minus strand signal of all reads) 83.3 MB
ENCFF794EXJ.bigWig bigWig (minus strand signal of all reads) 73.7 MB
ENCFF799NIH.bam bam (transcriptome alignments) 4.9 GB
ENCFF818UJA.bigWig bigWig (minus strand signal of all reads) 88.5 MB
ENCFF826BIY.bigWig bigWig (plus strand signal of all reads) 90.4 MB
ENCFF832QTB.tsv tsv (differential expression quantifications) 1.8 MB
ENCFF833SER.bigWig bigWig (plus strand signal of all reads) 85.1 MB
ENCFF835WUP.bam bam (alignments) 4.1 GB
ENCFF839XZI.bam bam (alignments) 4.1 GB
ENCFF841FDX.bigWig bigWig (minus strand signal of all reads) 83.1 MB
ENCFF879GTO.bigWig bigWig (minus strand signal of unique reads) 75.9 MB
ENCFF884PQV.bam bam (alignments) 3.3 GB
ENCFF895UQZ.bigWig bigWig (plus strand signal of all reads) 75.4 MB
ENCFF896SJT.bigWig bigWig (plus strand signal of unique reads) 78.7 MB
ENCFF902FZP.bigWig bigWig (plus strand signal of all reads) 89.8 MB
ENCFF905PQG.bigWig bigWig (minus strand signal of all reads) 83.5 MB
ENCFF937PMH.bigWig bigWig (plus strand signal of unique reads) 73.1 MB
ENCFF945IUY.tsv tsv (gene quantifications) 9.1 MB
ENCFF971NKK.tsv tsv (transcript quantifications) 29.8 MB
ENCFF984BTY.bigWig bigWig (minus strand signal of unique reads) 71.0 MB
ENCFF996ENQ.bigWig bigWig (minus strand signal of all reads) 83.1 MB
ENCSR143UET ENCSR · via encode_api

shRNA knockdown against EIF3G in K562 cells followed by RNA-seq. (EIF3G BGKLV13)

Homo sapiens

92 data files
FileTypeSize
ENCFF004SUK.bam bam (transcriptome alignments) 4.4 GB
ENCFF005XPJ.bigWig bigWig (plus strand signal of all reads) 76.7 MB
ENCFF010DYL.bigWig bigWig (minus strand signal of unique reads) 62.0 MB
ENCFF023HXX.bigWig bigWig (minus strand signal of all reads) 77.6 MB
ENCFF041AFE.bam bam (alignments) 3.1 GB
ENCFF052TMN.tsv tsv (transcript quantifications) 29.8 MB
ENCFF060VEM.bigWig bigWig (minus strand signal of unique reads) 60.5 MB
ENCFF066TVV.bam bam (alignments) 3.1 GB
ENCFF072WUL.bigWig bigWig (plus strand signal of unique reads) 63.5 MB
ENCFF074DGR.bigWig bigWig (plus strand signal of all reads) 78.5 MB
ENCFF097WLJ.bigWig bigWig (plus strand signal of unique reads) 71.0 MB
ENCFF109VQC.tsv tsv (gene quantifications) 9.4 MB
ENCFF111FDR.bigWig bigWig (plus strand signal of all reads) 76.6 MB
ENCFF114LOV.bam bam (alignments) 3.2 GB
ENCFF117QRX.tar tar (differential splicing quantifications) 3.8 MB
ENCFF128CQX.tsv tsv (transcript quantifications) 25.3 MB
ENCFF152TYW.bigWig bigWig (minus strand signal of all reads) 68.7 MB
ENCFF154FID.bigWig bigWig (plus strand signal of all reads) 71.6 MB
ENCFF172UAQ.bigWig bigWig (plus strand signal of unique reads) 70.0 MB
ENCFF174XOJ.bam bam (alignments) 3.1 GB
ENCFF176OQT.bigWig bigWig (minus strand signal of all reads) 69.8 MB
ENCFF179JYT.bigWig bigWig (plus strand signal of all reads) 72.2 MB
ENCFF199TVQ.tar tar (differential splicing quantifications) 13.5 MB
ENCFF221BKY.bigWig bigWig (minus strand signal of unique reads) 67.1 MB
ENCFF233IJG.bigWig bigWig (minus strand signal of all reads) 77.7 MB
ENCFF236EUQ.bigWig bigWig (plus strand signal of unique reads) 67.8 MB
ENCFF245VUA.bigWig bigWig (minus strand signal of all reads) 67.0 MB
ENCFF251MVI.bigWig bigWig (plus strand signal of unique reads) 71.0 MB
ENCFF298AXL.tsv tsv (transcript quantifications) 24.9 MB
ENCFF315YNK.tsv tsv (differential expression quantifications) 4.3 MB
ENCFF327RFK.bigWig bigWig (minus strand signal of unique reads) 65.4 MB
ENCFF350PYN.bam bam (transcriptome alignments) 4.9 GB
ENCFF352SRL.fastq fastq (reads) 1.9 GB
ENCFF364RWB.bigWig bigWig (plus strand signal of all reads) 66.8 MB
ENCFF364UUS.tsv tsv (transcript quantifications) 25.3 MB
ENCFF371GHU.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF383MQV.bigWig bigWig (minus strand signal of all reads) 77.7 MB
ENCFF385DYC.bam bam (transcriptome alignments) 4.9 GB
ENCFF400FQM.tsv tsv (differential expression quantifications) 1.8 MB
ENCFF401GUE.tsv tsv (gene quantifications) 9.4 MB
ENCFF411GOK.bigWig bigWig (plus strand signal of all reads) 70.9 MB
ENCFF413SHJ.bigWig bigWig (minus strand signal of all reads) 70.9 MB
ENCFF417TZL.bigWig bigWig (minus strand signal of unique reads) 67.7 MB
ENCFF439BQW.tsv tsv (transcript quantifications) 27.2 MB
ENCFF450ERL.bigWig bigWig (plus strand signal of unique reads) 69.2 MB
ENCFF451RMM.tsv tsv (differential expression quantifications) 5.5 MB
ENCFF467KMW.bigWig bigWig (minus strand signal of all reads) 75.8 MB
ENCFF468LCA.bam bam (alignments) 3.8 GB
ENCFF490HMG.bigWig bigWig (minus strand signal of all reads) 75.8 MB
ENCFF512IPW.bam bam (alignments) 3.7 GB
ENCFF525ZEB.fastq fastq (reads) 2.0 GB
ENCFF541QPD.bam bam (alignments) 3.7 GB
ENCFF555EQX.tsv tsv (gene quantifications) 10.4 MB
ENCFF556ZOJ.tsv tsv (differential expression quantifications) 3.0 MB
ENCFF559SKC.bigWig bigWig (minus strand signal of unique reads) 67.6 MB
ENCFF579COJ.fastq fastq (reads) 1.9 GB
ENCFF596BLW.bigWig bigWig (plus strand signal of unique reads) 65.6 MB
ENCFF609TBD.bigWig bigWig (minus strand signal of unique reads) 69.5 MB
ENCFF614VYE.fastq fastq (reads) 2.0 GB
ENCFF616VRM.bam bam (transcriptome alignments) 4.4 GB
ENCFF633QJY.bam bam (alignments) 3.8 GB
ENCFF677QJW.bigWig bigWig (plus strand signal of all reads) 69.5 MB
ENCFF685DBR.bigWig bigWig (plus strand signal of all reads) 78.4 MB
ENCFF715EGC.tsv tsv (transcript quantifications) 27.3 MB
ENCFF732KIB.bigWig bigWig (minus strand signal of unique reads) 64.0 MB
ENCFF732SEW.bigWig bigWig (minus strand signal of all reads) 75.8 MB
ENCFF740FWA.bigWig bigWig (minus strand signal of unique reads) 68.4 MB
ENCFF766MEZ.bigWig bigWig (minus strand signal of unique reads) 69.5 MB
ENCFF785KOR.tar tar (differential splicing quantifications) 3.4 MB
ENCFF797DSV.bigWig bigWig (plus strand signal of unique reads) 68.5 MB
ENCFF812DWJ.bigWig bigWig (plus strand signal of unique reads) 62.0 MB
ENCFF816NUE.tsv tsv (transcript quantifications) 24.9 MB
ENCFF829WRX.bigWig bigWig (plus strand signal of all reads) 78.5 MB
ENCFF833VBW.bigWig bigWig (plus strand signal of all reads) 76.6 MB
ENCFF837MHH.bam bam (alignments) 3.6 GB
ENCFF845RXV.bigWig bigWig (minus strand signal of unique reads) 66.3 MB
ENCFF849QRJ.bam bam (transcriptome alignments) 4.4 GB
ENCFF861ZTW.bigWig bigWig (plus strand signal of unique reads) 65.5 MB
ENCFF880QAB.bigWig bigWig (minus strand signal of unique reads) 64.3 MB
ENCFF883BBZ.tsv tsv (transcript quantifications) 29.8 MB
ENCFF884WRG.bam bam (transcriptome alignments) 4.3 GB
ENCFF899PGO.bigWig bigWig (minus strand signal of all reads) 65.8 MB
ENCFF907AFR.bam bam (alignments) 3.1 GB
ENCFF909NEF.tsv tsv (gene quantifications) 9.1 MB
ENCFF926RGN.bigWig bigWig (plus strand signal of all reads) 68.0 MB
ENCFF944BME.bam bam (alignments) 3.1 GB
ENCFF950IXM.tsv tsv (gene quantifications) 10.4 MB
ENCFF950PDX.bigWig bigWig (plus strand signal of unique reads) 66.7 MB
ENCFF965WMY.bigWig bigWig (plus strand signal of unique reads) 69.0 MB
ENCFF970NBJ.bam bam (alignments) 3.6 GB
ENCFF978UGT.bigWig bigWig (minus strand signal of all reads) 71.2 MB
ENCFF989MEQ.tsv tsv (gene quantifications) 9.1 MB
ENCSR018RVZ ENCSR · via encode_api

eCLIP experiment on HepG2 against NCBP2

Homo sapiens

36 data files
FileTypeSize
ENCFF025VQL.bam bam (alignments) 352.0 MB
ENCFF047YUZ.bed bed (peaks) 1.6 MB
ENCFF064FLX.bigBed bigBed (peaks) 2.6 MB
ENCFF071ZJE.bam bam (alignments) 365.4 MB
ENCFF113ZZQ.bigBed bigBed (peaks) 3.5 MB
ENCFF131GXP.bigWig bigWig (minus strand signal of unique reads) 18.5 MB
ENCFF138FXS.bam bam (alignments) 324.8 MB
ENCFF209YSK.bigBed bigBed (peaks) 4.0 MB
ENCFF235LEG.bed bed (peaks) 754.0 KB
ENCFF245ZKN.bed bed (peaks) 875.3 KB
ENCFF285KVV.bigWig bigWig (minus strand signal of unique reads) 17.5 MB
ENCFF317PCG.bigBed bigBed (peaks) 2.7 MB
ENCFF325QVX.bed bed (peaks) 308.4 KB
ENCFF344GLJ.bigBed bigBed (peaks) 670.7 KB
ENCFF352SYT.bigWig bigWig (plus strand signal of unique reads) 18.1 MB
ENCFF355UYF.bed bed (peaks) 2.0 MB
ENCFF401JCV.bigBed bigBed (peaks) 3.0 MB
ENCFF430WSO.bigBed bigBed (peaks) 744.8 KB
ENCFF442XFF.bigWig bigWig (minus strand signal of unique reads) 18.0 MB
ENCFF444ZHJ.fastq fastq (reads) 883.5 MB
ENCFF456PLF.bed bed (peaks) 71.0 KB
ENCFF457IKB.bam bam (alignments) 342.2 MB
ENCFF500HBQ.bed bed (peaks) 2.0 MB
ENCFF656KCR.bigBed bigBed (peaks) 1.6 MB
ENCFF683SQV.bigWig bigWig (minus strand signal of unique reads) 16.9 MB
ENCFF692RZM.bed bed (peaks) 70.5 KB
ENCFF725TVC.bigBed bigBed (peaks) 1.9 MB
ENCFF731KNX.fastq fastq (reads) 560.7 MB
ENCFF838SXG.fastq fastq (reads) 604.5 MB
ENCFF841ZMA.fastq fastq (reads) 821.5 MB
ENCFF843UUO.bigBed bigBed (peaks) 4.0 MB
ENCFF861WKP.bigWig bigWig (plus strand signal of unique reads) 19.6 MB
ENCFF890DWK.bigWig bigWig (plus strand signal of unique reads) 17.4 MB
ENCFF928PFE.bigWig bigWig (plus strand signal of unique reads) 19.1 MB
ENCFF933CZY.bed bed (peaks) 1.6 MB
ENCFF979OOP.bed bed (peaks) 346.5 KB
ENCSR506OTC ENCSR · via encode_api

eCLIP experiment on K562 against TBRG4

Homo sapiens

36 data files
FileTypeSize
ENCFF003ZMM.bigWig bigWig (minus strand signal of unique reads) 12.1 MB
ENCFF023SWE.bigBed bigBed (peaks) 2.0 MB
ENCFF032WIK.bigBed bigBed (peaks) 442.2 KB
ENCFF033ZLA.bed bed (peaks) 1.2 MB
ENCFF040CEA.bed bed (peaks) 1.3 MB
ENCFF165REA.bigWig bigWig (plus strand signal of unique reads) 12.8 MB
ENCFF228JVS.bigBed bigBed (peaks) 992.6 KB
ENCFF251OAT.bed bed (peaks) 498.0 KB
ENCFF259AFA.bam bam (alignments) 141.3 MB
ENCFF273ZJR.bam bam (alignments) 226.8 MB
ENCFF302CMM.bigBed bigBed (peaks) 2.0 MB
ENCFF307XYP.bam bam (alignments) 239.0 MB
ENCFF345TKW.fastq fastq (reads) 719.7 MB
ENCFF352HDR.bigBed bigBed (peaks) 462.6 KB
ENCFF371AWB.bigWig bigWig (plus strand signal of unique reads) 13.2 MB
ENCFF399OEH.fastq fastq (reads) 748.9 MB
ENCFF412KGD.bigWig bigWig (plus strand signal of unique reads) 6.5 MB
ENCFF422MXC.bed bed (peaks) 230.0 KB
ENCFF433EPL.bigBed bigBed (peaks) 2.1 MB
ENCFF445ALF.bigWig bigWig (plus strand signal of unique reads) 6.7 MB
ENCFF460SUH.bigBed bigBed (peaks) 2.5 MB
ENCFF475YXN.bigBed bigBed (peaks) 2.2 MB
ENCFF509AKB.bed bed (peaks) 8.7 KB
ENCFF577BHE.bigBed bigBed (peaks) 2.0 MB
ENCFF582GSU.fastq fastq (reads) 786.5 MB
ENCFF618WYU.bed bed (peaks) 7.9 KB
ENCFF687IPT.bigWig bigWig (minus strand signal of unique reads) 6.2 MB
ENCFF734UNZ.bed bed (peaks) 1.2 MB
ENCFF740LLA.bigWig bigWig (minus strand signal of unique reads) 6.3 MB
ENCFF769QMS.bigWig bigWig (minus strand signal of unique reads) 12.6 MB
ENCFF813VYB.bed bed (peaks) 1.3 MB
ENCFF894RPF.fastq fastq (reads) 687.8 MB
ENCFF910QNU.bam bam (alignments) 146.2 MB
ENCFF938YIS.bigBed bigBed (peaks) 1.2 MB
ENCFF966QXY.bed bed (peaks) 620.2 KB
ENCFF994FBZ.bed bed (peaks) 172.2 KB
ENCSR724RDN ENCSR · via encode_api

eCLIP experiment on HepG2 against HNRNPL

Homo sapiens

26 data files
FileTypeSize
ENCFF033PSX.bigBed bigBed (peaks) 1.3 MB
ENCFF038OQW.bigWig bigWig (minus strand signal of unique reads) 29.7 MB
ENCFF058KFE.bigWig bigWig (plus strand signal of unique reads) 31.4 MB
ENCFF073PCD.bed bed (peaks) 4.3 MB
ENCFF081VYS.fastq fastq (reads) 686.5 MB
ENCFF103PRM.bed bed (peaks) 2.9 MB
ENCFF118UDX.bigWig bigWig (minus strand signal of unique reads) 41.4 MB
ENCFF149UBH.fastq fastq (reads) 509.7 MB
ENCFF196CQK.bigWig bigWig (plus strand signal of unique reads) 29.5 MB
ENCFF229ZCQ.bigWig bigWig (minus strand signal of unique reads) 31.3 MB
ENCFF236KJO.bigBed bigBed (peaks) 1.8 MB
ENCFF238ELZ.bigWig bigWig (plus strand signal of unique reads) 42.3 MB
ENCFF242YTA.fastq fastq (reads) 489.6 MB
ENCFF266TKW.bed bed (peaks) 209.6 KB
ENCFF306SPZ.bigWig bigWig (plus strand signal of unique reads) 40.4 MB
ENCFF415HDB.bed bed (peaks) 3.0 MB
ENCFF518JBW.bam bam (alignments) 928.8 MB
ENCFF581SSQ.bed bed (peaks) 4.3 MB
ENCFF607WID.bam bam (alignments) 669.4 MB
ENCFF761PZC.fastq fastq (reads) 666.5 MB
ENCFF804QLX.bigWig bigWig (minus strand signal of unique reads) 40.2 MB
ENCFF819VZW.bigBed bigBed (peaks) 7.7 MB
ENCFF840DTR.bam bam (alignments) 964.4 MB
ENCFF890KEE.bed bed (peaks) 212.3 KB
ENCFF894SMP.bam bam (alignments) 716.5 MB
ENCFF942HMV.bigBed bigBed (peaks) 5.4 MB
ENCSR861PAR ENCSR · via encode_api

eCLIP experiment on K562 against NONO

Homo sapiens

36 data files
FileTypeSize
ENCFF008LDP.fastq fastq (reads) 429.3 MB
ENCFF011XRH.bigWig bigWig (minus strand signal of unique reads) 27.4 MB
ENCFF015HGB.bigWig bigWig (plus strand signal of unique reads) 30.0 MB
ENCFF043RMQ.bigWig bigWig (plus strand signal of unique reads) 24.8 MB
ENCFF060IHO.bed bed (peaks) 2.5 MB
ENCFF096AMS.bigBed bigBed (peaks) 1.1 MB
ENCFF109GPL.fastq fastq (reads) 449.9 MB
ENCFF171ATE.bam bam (alignments) 583.9 MB
ENCFF174MVU.bed bed (peaks) 2.6 MB
ENCFF187PFP.bigBed bigBed (peaks) 491.2 KB
ENCFF201YQC.bed bed (peaks) 2.0 MB
ENCFF224NTR.bam bam (alignments) 472.0 MB
ENCFF227ESJ.bigBed bigBed (peaks) 1.1 MB
ENCFF255PSA.bed bed (peaks) 517.7 KB
ENCFF351ATM.bam bam (alignments) 559.2 MB
ENCFF363HHT.bed bed (peaks) 231.0 KB
ENCFF444YFD.bigBed bigBed (peaks) 3.6 MB
ENCFF453WXP.bed bed (peaks) 171.2 KB
ENCFF465GNT.bigBed bigBed (peaks) 506.9 KB
ENCFF591MNK.bigBed bigBed (peaks) 1.8 MB
ENCFF661NXQ.bigWig bigWig (minus strand signal of unique reads) 23.3 MB
ENCFF671OSS.bed bed (peaks) 1.9 MB
ENCFF715MPQ.bigWig bigWig (plus strand signal of unique reads) 29.1 MB
ENCFF724ERL.fastq fastq (reads) 426.7 MB
ENCFF730QRI.bed bed (peaks) 230.2 KB
ENCFF744ULL.bigWig bigWig (minus strand signal of unique reads) 28.2 MB
ENCFF851XUN.bigBed bigBed (peaks) 3.7 MB
ENCFF873XLH.bed bed (peaks) 178.6 KB
ENCFF876EXN.bigWig bigWig (plus strand signal of unique reads) 25.7 MB
ENCFF877UPN.bed bed (peaks) 508.3 KB
ENCFF888NYK.bam bam (alignments) 448.8 MB
ENCFF896KWG.fastq fastq (reads) 467.2 MB
ENCFF898CPC.bigBed bigBed (peaks) 1.8 MB
ENCFF918YLZ.bigBed bigBed (peaks) 4.6 MB
ENCFF938HFA.bigBed bigBed (peaks) 4.7 MB
ENCFF967JAL.bigWig bigWig (minus strand signal of unique reads) 24.0 MB
ENCSR663WES ENCSR · via encode_api

eCLIP experiment on K562 against BUD13

Homo sapiens

36 data files
FileTypeSize
ENCFF019MEC.bigWig bigWig (plus strand signal of unique reads) 33.8 MB
ENCFF075JPD.bigBed bigBed (peaks) 953.0 KB
ENCFF086LQG.bam bam (alignments) 648.3 MB
ENCFF089RQT.bed bed (peaks) 1.3 MB
ENCFF096XGF.bed bed (peaks) 416.4 KB
ENCFF102QYZ.bed bed (peaks) 2.7 MB
ENCFF104FKE.bam bam (alignments) 726.6 MB
ENCFF130YZF.bam bam (alignments) 662.6 MB
ENCFF163UZA.bigWig bigWig (minus strand signal of unique reads) 30.0 MB
ENCFF172PJO.bigBed bigBed (peaks) 2.6 MB
ENCFF180PES.bigBed bigBed (peaks) 5.2 MB
ENCFF191VIT.bigWig bigWig (minus strand signal of unique reads) 33.0 MB
ENCFF209IGU.bigBed bigBed (peaks) 965.6 KB
ENCFF224CWV.bigWig bigWig (plus strand signal of unique reads) 31.1 MB
ENCFF262ILV.bed bed (peaks) 186.5 KB
ENCFF262ZDM.bigWig bigWig (minus strand signal of unique reads) 32.7 MB
ENCFF318ADU.fastq fastq (reads) 775.4 MB
ENCFF333JSY.bigBed bigBed (peaks) 4.9 MB
ENCFF391LND.bigBed bigBed (peaks) 4.9 MB
ENCFF399NVU.bed bed (peaks) 421.0 KB
ENCFF419MOS.bed bed (peaks) 2.8 MB
ENCFF437NSG.bigBed bigBed (peaks) 4.4 MB
ENCFF545BFR.fastq fastq (reads) 776.5 MB
ENCFF560OAU.bed bed (peaks) 2.6 MB
ENCFF563BNB.bam bam (alignments) 711.6 MB
ENCFF592QRP.bigBed bigBed (peaks) 5.2 MB
ENCFF608MEF.fastq fastq (reads) 780.4 MB
ENCFF630WRX.bigBed bigBed (peaks) 2.5 MB
ENCFF651CNX.bed bed (peaks) 176.7 KB
ENCFF659LQY.bigWig bigWig (minus strand signal of unique reads) 29.7 MB
ENCFF682OHZ.bigWig bigWig (plus strand signal of unique reads) 34.1 MB
ENCFF790VRM.bigBed bigBed (peaks) 4.5 MB
ENCFF807GJE.bed bed (peaks) 2.6 MB
ENCFF879YZY.bigWig bigWig (plus strand signal of unique reads) 30.8 MB
ENCFF880RKG.bed bed (peaks) 1.3 MB
ENCFF912DJK.fastq fastq (reads) 777.9 MB
ENCSR303OQD ENCSR · via encode_api

eCLIP experiment on K562 against METAP2

Homo sapiens

36 data files
FileTypeSize
ENCFF041HMB.bed bed (peaks) 1.1 MB
ENCFF084TRE.bigWig bigWig (plus strand signal of unique reads) 14.9 MB
ENCFF114TRH.bed bed (peaks) 222.9 KB
ENCFF130LEJ.bam bam (alignments) 216.5 MB
ENCFF135TAD.bed bed (peaks) 1.3 MB
ENCFF136TZL.fastq fastq (reads) 560.3 MB
ENCFF217PNK.bed bed (peaks) 681.7 KB
ENCFF227VPH.bigBed bigBed (peaks) 2.3 MB
ENCFF232SDJ.bigWig bigWig (minus strand signal of unique reads) 14.4 MB
ENCFF239NBV.bigBed bigBed (peaks) 2.7 MB
ENCFF255JDZ.fastq fastq (reads) 784.9 MB
ENCFF297FFH.bigBed bigBed (peaks) 2.3 MB
ENCFF305KBN.fastq fastq (reads) 749.5 MB
ENCFF385LMB.fastq fastq (reads) 568.3 MB
ENCFF449HWV.bigWig bigWig (plus strand signal of unique reads) 15.1 MB
ENCFF460RUI.bed bed (peaks) 239.5 KB
ENCFF468ZMC.bam bam (alignments) 274.0 MB
ENCFF525AOF.bigWig bigWig (minus strand signal of unique reads) 11.4 MB
ENCFF525SAA.bigBed bigBed (peaks) 1.6 MB
ENCFF532HRN.bigBed bigBed (peaks) 500.8 KB
ENCFF565BTR.bed bed (peaks) 67.8 KB
ENCFF644LPB.bed bed (peaks) 68.6 KB
ENCFF662GNC.bam bam (alignments) 221.7 MB
ENCFF668JDW.bigBed bigBed (peaks) 1.4 MB
ENCFF727RJA.bed bed (peaks) 1.3 MB
ENCFF757XSC.bigWig bigWig (minus strand signal of unique reads) 11.5 MB
ENCFF821QWP.bam bam (alignments) 268.2 MB
ENCFF840QOI.bigBed bigBed (peaks) 2.3 MB
ENCFF864WUG.bigWig bigWig (plus strand signal of unique reads) 12.0 MB
ENCFF877NAI.bigBed bigBed (peaks) 2.7 MB
ENCFF883EUE.bigBed bigBed (peaks) 2.5 MB
ENCFF962CKJ.bed bed (peaks) 1.1 MB
ENCFF971FWU.bigWig bigWig (minus strand signal of unique reads) 14.5 MB
ENCFF971IPK.bigBed bigBed (peaks) 530.3 KB
ENCFF982ATU.bigWig bigWig (plus strand signal of unique reads) 12.1 MB
ENCFF994AMX.bed bed (peaks) 743.1 KB
ENCSR565DGW ENCSR · via encode_api

eCLIP experiment on HepG2 against DHX30

Homo sapiens

34 data files
FileTypeSize
ENCFF049PPF.bigBed bigBed (peaks); assembly: hg19 1.7 MB
ENCFF061CZT.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 14.3 MB
ENCFF098AQK.bed bed (peaks); assembly: hg19 469.3 KB
ENCFF143TAM.bed bed (peaks); assembly: GRCh38 1.2 MB
ENCFF172NCN.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 11.4 MB
ENCFF174FQS.bed bed (peaks); assembly: hg19 420.1 KB
ENCFF183AUG.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 8.3 MB
ENCFF190UCK.bed bed (peaks); assembly: GRCh38 941.3 KB
ENCFF191HRQ.bed bed (peaks); assembly: hg19 1.2 MB
ENCFF233ZXV.bed bed (peaks); assembly: hg19 4.3 KB
ENCFF259ZLG.bam bam (alignments); assembly: hg19 215.5 MB
ENCFF294OYP.bigBed bigBed (peaks); assembly: GRCh38 1.6 MB
ENCFF381HWO.bed bed (peaks); assembly: GRCh38 159.2 KB
ENCFF431RWW.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 8.4 MB
ENCFF506NPG.bed bed (peaks); assembly: hg19 975.2 KB
ENCFF508MIM.bigBed bigBed (peaks); assembly: GRCh38 408.2 KB
ENCFF523LNK.bigBed bigBed (peaks); assembly: GRCh38 2.1 MB
ENCFF600ILL.bigBed bigBed (peaks); assembly: GRCh38 394.4 KB
ENCFF663QIZ.bed bed (peaks); assembly: GRCh38 4.4 KB
ENCFF678OCJ.bam bam (alignments); assembly: hg19 276.9 MB
ENCFF686GZG.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 13.7 MB
ENCFF705YYZ.bam bam (alignments); assembly: GRCh38 267.3 MB
ENCFF718GOT.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 14.0 MB
ENCFF797NFN.fastq fastq (reads) 652.1 MB
ENCFF809XHX.bam bam (alignments); assembly: GRCh38 205.5 MB
ENCFF827KOV.fastq fastq (reads) 706.6 MB
ENCFF831CXB.fastq fastq (reads) 709.6 MB
ENCFF864ZAU.bed bed (peaks); assembly: GRCh38 144.7 KB
ENCFF914TDS.bigBed bigBed (peaks); assembly: hg19 2.1 MB
ENCFF921CGQ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 11.6 MB
ENCFF930QLC.bigBed bigBed (peaks); assembly: hg19 923.9 KB
ENCFF942GGL.bigBed bigBed (peaks); assembly: hg19 867.0 KB
ENCFF969FSD.fastq fastq (reads) 653.0 MB
ENCFF974MYW.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 14.0 MB
ENCSR568DZW ENCSR · via encode_api

eCLIP experiment on K562 against TAF15

Homo sapiens

36 data files
FileTypeSize
ENCFF008QVV.bed bed (peaks); assembly: GRCh38 122.4 KB
ENCFF044RGH.bam bam (alignments); assembly: GRCh38 422.5 MB
ENCFF060GPY.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 20.0 MB
ENCFF064SNG.bed bed (peaks); assembly: GRCh38 122.6 KB
ENCFF111AKF.bigBed bigBed (peaks); assembly: hg19 1.4 MB
ENCFF131ZWK.bed bed (peaks); assembly: hg19 12.3 KB
ENCFF211PKX.bigBed bigBed (peaks); assembly: GRCh38 2.8 MB
ENCFF225ZZO.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 20.2 MB
ENCFF267QNA.bigBed bigBed (peaks); assembly: hg19 1.4 MB
ENCFF284FIC.bigBed bigBed (peaks); assembly: hg19 2.8 MB
ENCFF319ZVV.bigBed bigBed (peaks); assembly: GRCh38 337.4 KB
ENCFF340JJV.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 20.9 MB
ENCFF364URW.fastq fastq (reads) 318.3 MB
ENCFF375MMT.bigBed bigBed (peaks); assembly: GRCh38 2.9 MB
ENCFF409DPS.bed bed (peaks); assembly: GRCh38 1.8 MB
ENCFF476LZT.bigBed bigBed (peaks); assembly: hg19 738.9 KB
ENCFF501PCN.bam bam (alignments); assembly: GRCh38 417.6 MB
ENCFF576QRC.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 21.1 MB
ENCFF614CHS.bigBed bigBed (peaks); assembly: GRCh38 340.4 KB
ENCFF639RAN.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 20.6 MB
ENCFF646IFT.fastq fastq (reads) 305.6 MB
ENCFF659WCC.bigBed bigBed (peaks); assembly: hg19 2.8 MB
ENCFF748BCQ.bigBed bigBed (peaks); assembly: hg19 730.7 KB
ENCFF778THT.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 21.6 MB
ENCFF783IGF.bed bed (peaks); assembly: hg19 1.8 MB
ENCFF797IKQ.bam bam (alignments); assembly: hg19 422.7 MB
ENCFF798VKV.fastq fastq (reads) 269.7 MB
ENCFF810WKM.bed bed (peaks); assembly: hg19 356.3 KB
ENCFF822NWY.bed bed (peaks); assembly: GRCh38 12.1 KB
ENCFF915ATC.fastq fastq (reads) 346.9 MB
ENCFF932ZIK.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 21.6 MB
ENCFF959XVH.bam bam (alignments); assembly: hg19 413.1 MB
ENCFF979IVI.bed bed (peaks); assembly: hg19 1.8 MB
ENCFF985AJE.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 20.4 MB
ENCFF985KXJ.bed bed (peaks); assembly: hg19 360.4 KB
ENCFF996BXS.bed bed (peaks); assembly: GRCh38 1.8 MB
ENCSR916SRV ENCSR · via encode_api

eCLIP experiment on HepG2 against TBRG4

Homo sapiens

36 data files
FileTypeSize
ENCFF061HNX.bam bam (alignments); assembly: GRCh38 48.0 MB
ENCFF075EPZ.bed bed (peaks); assembly: hg19 612.3 KB
ENCFF075KBV.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 2.4 MB
ENCFF085PRU.fastq fastq (reads) 469.5 MB
ENCFF116ASC.bam bam (alignments); assembly: hg19 49.4 MB
ENCFF162ZNS.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 2.6 MB
ENCFF189PHS.bam bam (alignments); assembly: GRCh38 60.6 MB
ENCFF261PBE.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 2.4 MB
ENCFF273POY.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 2.9 MB
ENCFF304YLR.bed bed (peaks); assembly: hg19 2.4 KB
ENCFF348TAB.bed bed (peaks); assembly: GRCh38 1.0 MB
ENCFF406GRV.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 3.1 MB
ENCFF447XXS.fastq fastq (reads) 494.6 MB
ENCFF454ZHL.bed bed (peaks); assembly: hg19 799.3 KB
ENCFF472CCD.bed bed (peaks); assembly: hg19 1.0 MB
ENCFF506KNX.bigBed bigBed (peaks); assembly: GRCh38 773.8 KB
ENCFF539NWB.bed bed (peaks); assembly: GRCh38 443.0 KB
ENCFF583RIE.bed bed (peaks); assembly: hg19 860.2 KB
ENCFF641QIN.bigBed bigBed (peaks); assembly: GRCh38 549.2 KB
ENCFF669MVS.fastq fastq (reads) 537.7 MB
ENCFF691ZGO.bigBed bigBed (peaks); assembly: hg19 1.3 MB
ENCFF711EEJ.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 3.0 MB
ENCFF718RWU.fastq fastq (reads) 572.7 MB
ENCFF721DQT.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 2.5 MB
ENCFF734ODX.bed bed (peaks); assembly: GRCh38 286.8 KB
ENCFF736HGJ.bed bed (peaks); assembly: GRCh38 774.0 KB
ENCFF773UHJ.bigBed bigBed (peaks); assembly: hg19 991.5 KB
ENCFF774EOF.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 2.9 MB
ENCFF805JUH.bigBed bigBed (peaks); assembly: hg19 1.8 MB
ENCFF805POU.bigBed bigBed (peaks); assembly: hg19 3.7 MB
ENCFF869RUC.bed bed (peaks); assembly: GRCh38 2.4 KB
ENCFF895JLP.bigBed bigBed (peaks); assembly: GRCh38 1.4 MB
ENCFF925OBE.bam bam (alignments); assembly: hg19 63.4 MB
ENCFF979BSQ.bigBed bigBed (peaks); assembly: hg19 1.4 MB
ENCFF985WIZ.bigBed bigBed (peaks); assembly: hg19 2.7 MB
ENCFF987EOP.bigBed bigBed (peaks); assembly: GRCh38 1.8 MB
ENCSR097NEE ENCSR · via encode_api

eCLIP experiment on HepG2 against PPIG

Homo sapiens

35 data files
FileTypeSize
ENCFF065ZXM.bed bed (peaks) 2.4 MB
ENCFF084EON.bigWig bigWig (plus strand signal of unique reads) 20.3 MB
ENCFF112OJJ.bigWig bigWig (plus strand signal of unique reads) 23.8 MB
ENCFF144GBK.bam bam (alignments) 403.1 MB
ENCFF180YNF.bigBed bigBed (peaks) 4.5 MB
ENCFF188WPL.bigWig bigWig (minus strand signal of unique reads) 19.6 MB
ENCFF193XUL.fastq fastq (reads) 775.9 MB
ENCFF236RNG.bigBed bigBed (peaks) 4.6 MB
ENCFF253RQY.bigWig bigWig (minus strand signal of unique reads) 23.5 MB
ENCFF262WDD.bigBed bigBed (peaks) 4.3 MB
ENCFF284MRX.bed bed (peaks) 501.5 KB
ENCFF285DZD.bigBed bigBed (peaks) 3.7 MB
ENCFF315BAC.bed bed (peaks) 1.9 MB
ENCFF343FWV.fastq fastq (reads) 699.9 MB
ENCFF378ELA.bigBed bigBed (peaks) 1.6 MB
ENCFF406VBM.bigBed bigBed (peaks) 4.6 MB
ENCFF424HUO.bed bed (peaks) 656.5 KB
ENCFF463LZD.bigWig bigWig (plus strand signal of unique reads) 19.8 MB
ENCFF472EII.bed bed (peaks) 1.9 MB
ENCFF477APU.fastq fastq (reads) 677.1 MB
ENCFF555MNK.bam bam (alignments) 387.6 MB
ENCFF589ZZZ.bigBed bigBed (peaks) 1.4 MB
ENCFF597JSM.bed bed (peaks) 2.3 MB
ENCFF603DSB.bed bed (peaks) 2.2 MB
ENCFF603KZJ.bigBed bigBed (peaks) 4.2 MB
ENCFF647KKB.fastq fastq (reads) 739.6 MB
ENCFF733DRI.bam bam (alignments) 492.4 MB
ENCFF756NJB.bam bam (alignments) 479.5 MB
ENCFF772NRW.bed bed (peaks) 735.0 KB
ENCFF816PES.bigBed bigBed (peaks) 6.6 MB
ENCFF892PSC.bigWig bigWig (plus strand signal of unique reads) 24.2 MB
ENCFF914TIW.bigWig bigWig (minus strand signal of unique reads) 19.1 MB
ENCFF933GYG.bigWig bigWig (minus strand signal of unique reads) 23.1 MB
ENCFF953KUR.bed bed (peaks) 2.2 MB
ENCFF986XOC.bed bed (peaks) 510.7 KB
ENCSR697VZN ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) pulldown experiment against FUBP3

14 data files
FileTypeSize
ENCFF012DBP.fastq fastq (reads) 300.2 MB
ENCFF071WGX.fastq fastq (reads) 488.5 MB
ENCFF130HUZ.fastq fastq (reads) 328.9 MB
ENCFF146YJF.fastq fastq (reads) 313.1 MB
ENCFF229MQG.tsv tsv (library fraction) 64.4 KB
ENCFF325TXM.bed bed (peaks) 211.4 KB
ENCFF340APJ.tsv tsv (library fraction) 264.8 KB
ENCFF415RLT.tsv tsv (enrichment) 10.0 KB
ENCFF610YNE.tsv tsv (enrichment) 688.0 KB
ENCFF626IFM.fastq fastq (reads) 458.1 MB
ENCFF771NBD.tsv tsv (library fraction) 15.5 KB
ENCFF826BAQ.tsv tsv (enrichment) 41.0 KB
ENCFF891TDY.tsv tsv (enrichment) 168.0 KB
ENCFF901VSN.tsv tsv (library fraction) 1.1 MB
ENCSR041NUV ENCSR · via encode_api

eCLIP experiment on HepG2 against EIF3D

Homo sapiens

36 data files
FileTypeSize
ENCFF005VCE.bam bam (alignments) 890.3 MB
ENCFF010OYC.bigWig bigWig (minus strand signal of unique reads) 34.5 MB
ENCFF024EQI.fastq fastq (reads) 731.3 MB
ENCFF038GOY.bigBed bigBed (peaks) 1.7 MB
ENCFF048OWX.bigWig bigWig (minus strand signal of unique reads) 38.8 MB
ENCFF056UAW.bed bed (peaks) 17.0 KB
ENCFF099DYI.bigBed bigBed (peaks) 6.4 MB
ENCFF104YAE.bigBed bigBed (peaks) 7.0 MB
ENCFF113AUA.bigBed bigBed (peaks) 678.1 KB
ENCFF130JJX.bed bed (peaks) 16.5 KB
ENCFF187PCO.bam bam (alignments) 774.2 MB
ENCFF197CXZ.bigBed bigBed (peaks) 7.1 MB
ENCFF215APL.bigBed bigBed (peaks) 1.7 MB
ENCFF286YIR.bed bed (peaks) 3.3 MB
ENCFF300MMN.bigWig bigWig (minus strand signal of unique reads) 33.3 MB
ENCFF329LNT.fastq fastq (reads) 765.3 MB
ENCFF344JTJ.bigWig bigWig (minus strand signal of unique reads) 39.7 MB
ENCFF351MQG.bigWig bigWig (plus strand signal of unique reads) 34.5 MB
ENCFF404RAC.bed bed (peaks) 861.0 KB
ENCFF462ECY.bigWig bigWig (plus strand signal of unique reads) 35.8 MB
ENCFF561YDZ.bigBed bigBed (peaks) 3.1 MB
ENCFF576OQO.bam bam (alignments) 860.8 MB
ENCFF650RVF.bed bed (peaks) 3.4 MB
ENCFF678TXO.bam bam (alignments) 737.1 MB
ENCFF733BQQ.bigBed bigBed (peaks) 6.3 MB
ENCFF738CPK.bed bed (peaks) 3.8 MB
ENCFF777URH.bed bed (peaks) 272.4 KB
ENCFF816KHF.bed bed (peaks) 852.7 KB
ENCFF845XMT.bigWig bigWig (plus strand signal of unique reads) 39.6 MB
ENCFF851SIK.fastq fastq (reads) 722.6 MB
ENCFF861AUD.bed bed (peaks) 260.8 KB
ENCFF891XHE.bed bed (peaks) 3.7 MB
ENCFF957IOQ.fastq fastq (reads) 781.5 MB
ENCFF969DSE.bigBed bigBed (peaks) 3.1 MB
ENCFF983NWB.bigBed bigBed (peaks) 655.7 KB
ENCFF991QIX.bigWig bigWig (plus strand signal of unique reads) 40.6 MB
ENCSR328PGZ ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) pulldown experiment against hnRNPH2

11 data files
FileTypeSize
ENCFF183XXP.fastq fastq (reads) 224.9 MB
ENCFF271YCR.fastq fastq (reads) 351.4 MB
ENCFF341AET.fastq fastq (reads) 224.0 MB
ENCFF471ZPP.fastq fastq (reads) 343.9 MB
ENCFF554FAN.tsv tsv (library fraction) 313.0 KB
ENCFF690ORX.tsv tsv (library fraction) 75.2 KB
ENCFF760BOS.tsv tsv (library fraction) 17.8 KB
ENCFF765KER.tsv tsv (enrichment) 60.0 KB
ENCFF789QRU.fastq fastq (reads) 333.4 MB
ENCFF852RPM.tsv tsv (enrichment) 14.8 KB
ENCFF951WED.tsv tsv (enrichment) 244.0 KB
ENCSR074UZM ENCSR · via encode_api

shRNA knockdown against G3BP1 in HepG2 cells followed by RNA-seq. (G3BP1-BGHLV12)

Homo sapiens

92 data files
FileTypeSize
ENCFF011OEU.bam bam (transcriptome alignments) 5.8 GB
ENCFF012GYQ.bam bam (alignments) 3.9 GB
ENCFF023KNL.tsv tsv (transcript quantifications) 29.8 MB
ENCFF026AZZ.bigWig bigWig (minus strand signal of all reads) 92.1 MB
ENCFF031MVA.bigWig bigWig (plus strand signal of all reads) 88.1 MB
ENCFF040NUK.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF066LFL.bam bam (alignments) 4.0 GB
ENCFF077TEZ.tsv tsv (transcript quantifications) 25.3 MB
ENCFF092OSB.bam bam (alignments) 4.9 GB
ENCFF098UQU.tsv tsv (transcript quantifications) 27.4 MB
ENCFF112BSE.bigWig bigWig (minus strand signal of all reads) 86.4 MB
ENCFF126NCR.tsv tsv (differential expression quantifications) 3.0 MB
ENCFF132HPM.tsv tsv (transcript quantifications) 25.3 MB
ENCFF137XOU.bigWig bigWig (minus strand signal of all reads) 92.2 MB
ENCFF156KIP.bigWig bigWig (minus strand signal of all reads) 85.9 MB
ENCFF185IGA.bigWig bigWig (minus strand signal of unique reads) 83.2 MB
ENCFF192LNE.bigWig bigWig (plus strand signal of all reads) 93.7 MB
ENCFF194OKW.tsv tsv (differential expression quantifications) 1.8 MB
ENCFF200GDD.tsv tsv (gene quantifications) 9.4 MB
ENCFF206QVZ.bigWig bigWig (minus strand signal of unique reads) 75.4 MB
ENCFF210XAX.bigWig bigWig (plus strand signal of all reads) 85.4 MB
ENCFF238SMR.bam bam (transcriptome alignments) 5.9 GB
ENCFF261DZS.tsv tsv (gene quantifications) 9.1 MB
ENCFF264QLY.bigWig bigWig (plus strand signal of unique reads) 81.3 MB
ENCFF280KXO.tar tar (differential splicing quantifications) 4.1 MB
ENCFF280LVD.bigWig bigWig (minus strand signal of unique reads) 83.0 MB
ENCFF281GKZ.fastq fastq (reads) 2.6 GB
ENCFF291KXG.bigWig bigWig (minus strand signal of all reads) 81.7 MB
ENCFF305PZE.bigWig bigWig (plus strand signal of all reads) 94.5 MB
ENCFF309XFF.bigWig bigWig (plus strand signal of unique reads) 85.8 MB
ENCFF322IQO.bigWig bigWig (plus strand signal of unique reads) 82.4 MB
ENCFF342CYS.bigWig bigWig (plus strand signal of all reads) 87.6 MB
ENCFF358XGE.fastq fastq (reads) 2.5 GB
ENCFF374ODO.bigWig bigWig (minus strand signal of unique reads) 79.8 MB
ENCFF387XHW.bam bam (transcriptome alignments) 5.9 GB
ENCFF403SOL.bigWig bigWig (plus strand signal of unique reads) 85.4 MB
ENCFF407GWW.bigWig bigWig (plus strand signal of all reads) 93.6 MB
ENCFF409PZU.bigWig bigWig (plus strand signal of all reads) 83.1 MB
ENCFF433ERW.bam bam (alignments) 3.9 GB
ENCFF434ALD.bam bam (alignments) 4.8 GB
ENCFF436CIJ.bigWig bigWig (plus strand signal of unique reads) 86.3 MB
ENCFF445ZOK.bigWig bigWig (minus strand signal of unique reads) 84.1 MB
ENCFF463MOX.bam bam (transcriptome alignments) 6.7 GB
ENCFF470CAS.bigWig bigWig (minus strand signal of unique reads) 83.6 MB
ENCFF470SSW.bigWig bigWig (minus strand signal of all reads) 81.5 MB
ENCFF501OZD.bigWig bigWig (minus strand signal of all reads) 92.9 MB
ENCFF505CUC.bam bam (transcriptome alignments) 5.8 GB
ENCFF505REB.bigWig bigWig (plus strand signal of unique reads) 78.6 MB
ENCFF511CSM.bigWig bigWig (minus strand signal of all reads) 92.9 MB
ENCFF523IBV.bigWig bigWig (plus strand signal of unique reads) 85.7 MB
ENCFF526ZEQ.bigWig bigWig (minus strand signal of all reads) 83.9 MB
ENCFF529THE.bam bam (alignments) 4.6 GB
ENCFF530KFH.bigWig bigWig (plus strand signal of unique reads) 82.0 MB
ENCFF531KEI.bigWig bigWig (plus strand signal of all reads) 83.3 MB
ENCFF538YOX.bigWig bigWig (minus strand signal of all reads) 91.9 MB
ENCFF569GZG.bigWig bigWig (plus strand signal of all reads) 93.7 MB
ENCFF594HLD.tsv tsv (transcript quantifications) 24.9 MB
ENCFF615XAE.tsv tsv (differential expression quantifications) 4.4 MB
ENCFF657ULB.bam bam (transcriptome alignments) 6.6 GB
ENCFF660HVU.tsv tsv (gene quantifications) 9.4 MB
ENCFF681OJX.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF695XHP.bigWig bigWig (plus strand signal of all reads) 85.4 MB
ENCFF712ARI.bigWig bigWig (minus strand signal of unique reads) 83.6 MB
ENCFF742CQQ.bigWig bigWig (minus strand signal of all reads) 83.9 MB
ENCFF750LOR.bigWig bigWig (plus strand signal of unique reads) 85.1 MB
ENCFF771PNP.tsv tsv (transcript quantifications) 27.4 MB
ENCFF773EAX.tar tar (differential splicing quantifications) 16.7 MB
ENCFF773FGQ.bigWig bigWig (minus strand signal of unique reads) 78.5 MB
ENCFF776DKZ.bam bam (alignments) 3.9 GB
ENCFF785VSA.tsv tsv (gene quantifications) 10.4 MB
ENCFF786BPO.bigWig bigWig (plus strand signal of unique reads) 80.5 MB
ENCFF788BBS.tsv tsv (transcript quantifications) 29.8 MB
ENCFF802YST.tsv tsv (gene quantifications) 10.4 MB
ENCFF807GSK.bigWig bigWig (plus strand signal of unique reads) 77.4 MB
ENCFF821WXH.bigWig bigWig (minus strand signal of unique reads) 76.4 MB
ENCFF826MUD.fastq fastq (reads) 2.6 GB
ENCFF827CGB.bam bam (alignments) 4.0 GB
ENCFF832SEF.tsv tsv (gene quantifications) 9.1 MB
ENCFF838PRQ.bigWig bigWig (minus strand signal of unique reads) 79.3 MB
ENCFF844ZHZ.bam bam (alignments) 4.6 GB
ENCFF859BJR.bam bam (alignments) 3.9 GB
ENCFF861CUM.bigWig bigWig (plus strand signal of all reads) 93.3 MB
ENCFF868KRY.bigWig bigWig (minus strand signal of unique reads) 84.1 MB
ENCFF875XTN.bigWig bigWig (minus strand signal of unique reads) 80.2 MB
ENCFF890QDC.bam bam (alignments) 4.8 GB
ENCFF901RQZ.bigWig bigWig (minus strand signal of all reads) 92.1 MB
ENCFF928RWG.fastq fastq (reads) 2.6 GB
ENCFF929FEQ.bam bam (alignments) 4.9 GB
ENCFF936MBP.tar tar (differential splicing quantifications) 3.3 MB
ENCFF950VMP.bigWig bigWig (plus strand signal of unique reads) 86.3 MB
ENCFF971IIW.tsv tsv (transcript quantifications) 24.9 MB
ENCFF996EXS.bigWig bigWig (plus strand signal of all reads) 94.5 MB
ENCSR732IYM ENCSR · via encode_api

shRNA knockdown against XRCC5 in HepG2 cells followed by RNA-seq. (XRCC5 BGHLV14)

Homo sapiens

92 data files
FileTypeSize
ENCFF008YXA.bigWig bigWig (minus strand signal of unique reads) 72.1 MB
ENCFF020VSG.fastq fastq (reads) 2.0 GB
ENCFF033SKV.bigWig bigWig (minus strand signal of all reads) 71.4 MB
ENCFF037YWD.tsv tsv (transcript quantifications) 24.9 MB
ENCFF043CMP.bigWig bigWig (plus strand signal of all reads) 83.7 MB
ENCFF043IQH.bigWig bigWig (plus strand signal of unique reads) 66.8 MB
ENCFF066KES.bigWig bigWig (plus strand signal of unique reads) 66.0 MB
ENCFF068VEW.bigWig bigWig (minus strand signal of unique reads) 65.1 MB
ENCFF093LAN.bam bam (alignments) 3.6 GB
ENCFF096TQD.bigWig bigWig (minus strand signal of all reads) 72.5 MB
ENCFF099GII.bigWig bigWig (minus strand signal of all reads) 62.0 MB
ENCFF099JTY.bigWig bigWig (plus strand signal of all reads) 77.7 MB
ENCFF101GYC.bam bam (alignments) 3.0 GB
ENCFF110CFH.bigWig bigWig (minus strand signal of all reads) 66.5 MB
ENCFF124YPZ.bigWig bigWig (minus strand signal of unique reads) 64.8 MB
ENCFF167RKN.bigWig bigWig (plus strand signal of all reads) 73.8 MB
ENCFF182NFH.tsv tsv (transcript quantifications) 24.9 MB
ENCFF187GMM.bigWig bigWig (plus strand signal of unique reads) 63.0 MB
ENCFF195DCN.fastq fastq (reads) 2.4 GB
ENCFF209SIN.tsv tsv (transcript quantifications) 27.2 MB
ENCFF233KWK.bigWig bigWig (minus strand signal of all reads) 82.5 MB
ENCFF244IQU.bigWig bigWig (plus strand signal of all reads) 73.9 MB
ENCFF251WQU.fastq fastq (reads) 1.9 GB
ENCFF268NGO.bigWig bigWig (plus strand signal of all reads) 84.5 MB
ENCFF271DJN.bam bam (alignments) 4.2 GB
ENCFF276OKC.tsv tsv (gene quantifications) 9.4 MB
ENCFF276RBC.bam bam (transcriptome alignments) 4.3 GB
ENCFF303SBJ.fastq fastq (reads) 2.4 GB
ENCFF329JFE.bigWig bigWig (plus strand signal of unique reads) 69.2 MB
ENCFF329VIK.bigWig bigWig (plus strand signal of all reads) 67.8 MB
ENCFF332CHF.bam bam (alignments) 4.5 GB
ENCFF356YKU.bam bam (alignments) 3.6 GB
ENCFF358QCI.bam bam (transcriptome alignments) 5.3 GB
ENCFF389EMY.bigWig bigWig (plus strand signal of all reads) 63.1 MB
ENCFF401RXS.tar tar (differential splicing quantifications) 3.5 MB
ENCFF431UPW.tsv tsv (differential expression quantifications) 4.2 MB
ENCFF437ZEW.bigWig bigWig (minus strand signal of all reads) 65.5 MB
ENCFF447KNM.bigWig bigWig (minus strand signal of unique reads) 75.5 MB
ENCFF451TLM.bam bam (alignments) 3.6 GB
ENCFF465XYV.bam bam (transcriptome alignments) 6.0 GB
ENCFF471NIA.bigWig bigWig (minus strand signal of all reads) 77.7 MB
ENCFF479ALT.bigWig bigWig (minus strand signal of unique reads) 61.4 MB
ENCFF489DMK.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF498HYH.bigWig bigWig (minus strand signal of unique reads) 74.7 MB
ENCFF522XWL.bam bam (alignments) 4.5 GB
ENCFF523VCC.tsv tsv (transcript quantifications) 27.3 MB
ENCFF535DTX.bigWig bigWig (minus strand signal of unique reads) 67.3 MB
ENCFF555QGJ.bigWig bigWig (plus strand signal of unique reads) 76.6 MB
ENCFF562WXI.bigWig bigWig (plus strand signal of all reads) 79.1 MB
ENCFF584UKY.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF599PLA.bam bam (alignments) 3.0 GB
ENCFF611GQZ.bigWig bigWig (plus strand signal of unique reads) 63.0 MB
ENCFF629FHL.bam bam (alignments) 3.5 GB
ENCFF631YHK.bigWig bigWig (minus strand signal of all reads) 83.1 MB
ENCFF646WWT.bam bam (alignments) 3.6 GB
ENCFF647WIA.bigWig bigWig (plus strand signal of unique reads) 77.4 MB
ENCFF652NGN.tsv tsv (gene quantifications) 10.4 MB
ENCFF676IXW.bigWig bigWig (minus strand signal of unique reads) 71.4 MB
ENCFF680GAR.tsv tsv (transcript quantifications) 25.3 MB
ENCFF681FXE.bigWig bigWig (plus strand signal of all reads) 73.8 MB
ENCFF683FTD.bam bam (transcriptome alignments) 4.4 GB
ENCFF686SNU.bigWig bigWig (plus strand signal of unique reads) 77.4 MB
ENCFF687KBT.bigWig bigWig (plus strand signal of unique reads) 66.4 MB
ENCFF692AJP.bigWig bigWig (minus strand signal of all reads) 83.1 MB
ENCFF695QDM.bigWig bigWig (minus strand signal of all reads) 72.5 MB
ENCFF699ADB.tsv tsv (gene quantifications) 9.4 MB
ENCFF707CUG.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF707TFE.bigWig bigWig (plus strand signal of all reads) 66.6 MB
ENCFF716WJG.bigWig bigWig (plus strand signal of unique reads) 73.1 MB
ENCFF733WVJ.bigWig bigWig (plus strand signal of all reads) 84.5 MB
ENCFF756SOP.bigWig bigWig (minus strand signal of unique reads) 64.4 MB
ENCFF785SHC.bigWig bigWig (plus strand signal of unique reads) 74.0 MB
ENCFF789THJ.bigWig bigWig (plus strand signal of unique reads) 59.5 MB
ENCFF791EAR.bigWig bigWig (minus strand signal of all reads) 76.5 MB
ENCFF795XXA.tar tar (differential splicing quantifications) 14.9 MB
ENCFF797ZNV.bam bam (alignments) 3.7 GB
ENCFF813GGB.bam bam (alignments) 3.0 GB
ENCFF816VFI.tar tar (differential splicing quantifications) 2.9 MB
ENCFF826ISV.bigWig bigWig (minus strand signal of all reads) 72.5 MB
ENCFF832WIX.bigWig bigWig (minus strand signal of unique reads) 75.6 MB
ENCFF871HSM.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF886GKA.bam bam (transcriptome alignments) 4.9 GB
ENCFF893MOX.bigWig bigWig (plus strand signal of all reads) 72.5 MB
ENCFF908GER.tsv tsv (transcript quantifications) 25.3 MB
ENCFF923OMX.bigWig bigWig (minus strand signal of unique reads) 57.9 MB
ENCFF935NWZ.bigWig bigWig (minus strand signal of unique reads) 61.5 MB
ENCFF937TPD.tsv tsv (transcript quantifications) 29.8 MB
ENCFF948BGE.tsv tsv (gene quantifications) 10.4 MB
ENCFF949GPP.tsv tsv (gene quantifications) 9.1 MB
ENCFF965OLL.bam bam (transcriptome alignments) 5.3 GB
ENCFF970ZIL.tsv tsv (transcript quantifications) 29.8 MB
ENCFF973MSY.tsv tsv (gene quantifications) 9.1 MB
ENCSR455VZH ENCSR · via encode_api

shRNA knockdown against PABPC4 in HepG2 cells followed by RNA-seq. (PABPC4-BGHLV12)

Homo sapiens

92 data files
FileTypeSize
ENCFF034IKG.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 7.6 GB
ENCFF047LVV.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 83.8 MB
ENCFF048REI.bam bam (alignments); assembly: hg19; genome annotation: V19 4.4 GB
ENCFF051CKF.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 74.7 MB
ENCFF068TUQ.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF071EMK.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 77.5 MB
ENCFF090WIS.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.9 MB
ENCFF102XYI.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 85.0 MB
ENCFF108CNL.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 90.4 MB
ENCFF115IBM.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 84.9 MB
ENCFF117TAT.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 92.7 MB
ENCFF121LSP.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF122EPY.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF123FHZ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 76.5 MB
ENCFF146RBW.bam bam (alignments); assembly: GRCh38; genome annotation: V29 5.5 GB
ENCFF165MSN.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 81.5 MB
ENCFF169XOQ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 83.4 MB
ENCFF214MHJ.bam bam (alignments); assembly: GRCh38; genome annotation: V29 5.3 GB
ENCFF217MKB.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 82.1 MB
ENCFF219DLB.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 82.8 MB
ENCFF225DRK.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 78.6 MB
ENCFF225MYA.fastq fastq (reads) 3.0 GB
ENCFF277VNX.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 76.7 MB
ENCFF278QHX.bam bam (alignments); assembly: GRCh38; genome annotation: V24 5.3 GB
ENCFF282QWQ.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 80.8 MB
ENCFF283JUK.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 82.4 MB
ENCFF284PQN.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 4.4 MB
ENCFF284UUH.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF288ZLD.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 5.6 MB
ENCFF291FDF.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 3.3 MB
ENCFF303FAZ.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 79.2 MB
ENCFF308SRK.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 7.1 GB
ENCFF309WYI.bam bam (alignments); assembly: GRCh38; genome annotation: V24 5.5 GB
ENCFF322GAE.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF344JQF.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 16.6 MB
ENCFF359BAT.bam bam (alignments); assembly: hg19; genome annotation: V19 5.2 GB
ENCFF368IFZ.fastq fastq (reads) 2.9 GB
ENCFF370HTP.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 92.7 MB
ENCFF373AID.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 90.9 MB
ENCFF383LGH.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 6.7 GB
ENCFF385ACT.fastq fastq (reads) 3.1 GB
ENCFF392YLG.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 84.0 MB
ENCFF420ULD.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 91.5 MB
ENCFF424CIS.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 83.7 MB
ENCFF427KNR.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 85.5 MB
ENCFF436XWE.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.5 GB
ENCFF498MXN.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 82.2 MB
ENCFF507TQP.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.4 MB
ENCFF513RCG.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 79.1 MB
ENCFF532TPI.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 79.2 MB
ENCFF535KGG.bam bam (alignments); assembly: hg19; genome annotation: V19 4.6 GB
ENCFF542WWO.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 77.5 MB
ENCFF560RJQ.bam bam (alignments); assembly: hg19; genome annotation: V19 5.4 GB
ENCFF566BJJ.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 82.1 MB
ENCFF575PJN.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF593OEY.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 94.0 MB
ENCFF631TEW.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 79.4 MB
ENCFF632UUA.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.4 MB
ENCFF638EGU.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF639EOJ.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 83.6 MB
ENCFF659FPF.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.6 GB
ENCFF664SIZ.fastq fastq (reads) 3.0 GB
ENCFF714SXU.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 81.6 MB
ENCFF721NWX.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 84.7 MB
ENCFF728UVE.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.8 MB
ENCFF736KEU.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 89.3 MB
ENCFF746CNZ.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF756BAT.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 80.5 MB
ENCFF771FYS.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 92.1 MB
ENCFF779OMZ.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 6.7 GB
ENCFF789ZIS.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 92.7 MB
ENCFF804XGB.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF816CCW.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 85.2 MB
ENCFF820DNK.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 92.1 MB
ENCFF823VZR.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 83.0 MB
ENCFF835OKT.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 86.1 MB
ENCFF839BNX.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF840OBQ.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 90.9 MB
ENCFF847OTP.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 83.5 MB
ENCFF852OED.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 79.6 MB
ENCFF868MKD.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 4.0 MB
ENCFF868XPW.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 3.0 MB
ENCFF882CDZ.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF899WOJ.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 84.6 MB
ENCFF907GVB.bam bam (alignments); assembly: hg19; genome annotation: V19 4.4 GB
ENCFF928YXB.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 83.5 MB
ENCFF929OLP.bam bam (alignments); assembly: hg19; genome annotation: V19 4.6 GB
ENCFF944JSF.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 7.1 GB
ENCFF956KWS.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF962FPJ.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 8.0 GB
ENCFF967KRA.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 83.9 MB
ENCFF981XZT.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 94.0 MB
ENCSR061SZV ENCSR · via encode_api

eCLIP experiment on HepG2 against DGCR8

Homo sapiens

30 data files
FileTypeSize
ENCFF028NKZ.bigWig bigWig (minus strand signal of unique reads) 21.0 MB
ENCFF189ALO.bed bed (peaks) 585.2 KB
ENCFF193URO.bed bed (peaks) 41.3 KB
ENCFF242WEP.bed bed (peaks) 40.1 KB
ENCFF254XWY.bigWig bigWig (plus strand signal of unique reads) 21.8 MB
ENCFF347OGO.fastq fastq (reads) 474.0 MB
ENCFF382SXP.bed bed (peaks) 2.3 MB
ENCFF414UFZ.bam bam (alignments) 551.1 MB
ENCFF420ZZD.fastq fastq (reads) 365.1 MB
ENCFF461HDJ.bigBed bigBed (peaks) 3.6 MB
ENCFF472EOS.bed bed (peaks) 189.3 KB
ENCFF492NNT.bed bed (peaks) 1.7 MB
ENCFF524QNY.bed bed (peaks) 508.6 KB
ENCFF542YWU.fastq fastq (reads) 366.8 MB
ENCFF559WUX.bam bam (alignments) 433.0 MB
ENCFF578BUD.bigBed bigBed (peaks) 2.8 MB
ENCFF648JOL.bigBed bigBed (peaks) 2.8 MB
ENCFF674MHQ.bed bed (peaks) 1.8 MB
ENCFF703NQI.bam bam (alignments) 571.3 MB
ENCFF720NSH.bigWig bigWig (plus strand signal of unique reads) 27.3 MB
ENCFF781EOX.bigWig bigWig (minus strand signal of unique reads) 26.5 MB
ENCFF810XFM.bigWig bigWig (plus strand signal of unique reads) 22.7 MB
ENCFF826SOM.bigWig bigWig (minus strand signal of unique reads) 21.8 MB
ENCFF833NAI.bigWig bigWig (plus strand signal of unique reads) 28.0 MB
ENCFF905UKZ.fastq fastq (reads) 461.5 MB
ENCFF933HUL.bigWig bigWig (minus strand signal of unique reads) 27.2 MB
ENCFF951OAJ.bed bed (peaks) 2.3 MB
ENCFF960NPN.bam bam (alignments) 410.4 MB
ENCFF969WWX.bed bed (peaks) 161.2 KB
ENCFF990NBL.bigBed bigBed (peaks) 3.6 MB
ENCSR236YBZ ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) input control experiment of ESRP1

1 data file
FileTypeSize
ENCFF353BLN.fastq fastq (reads) 344.2 MB
ENCSR928XOW ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) pulldown experiment against IGF2BP1/IMP1

19 data files
FileTypeSize
ENCFF002DES.tsv tsv (enrichment) 60.0 KB
ENCFF002DET.tsv tsv (enrichment) 244.0 KB
ENCFF002DEU.tsv tsv (enrichment) 992.0 KB
ENCFF002DEV.tsv tsv (library fraction) 76.2 KB
ENCFF002DEW.tsv tsv (library fraction) 311.7 KB
ENCFF002DEX.tsv tsv (library fraction) 1.2 MB
ENCFF002DGI.fastq fastq (reads) 531.7 MB
ENCFF002DGJ.fastq fastq (reads) 553.2 MB
ENCFF002DGK.fastq fastq (reads) 535.9 MB
ENCFF002DGL.fastq fastq (reads) 488.2 MB
ENCFF002DGM.fastq fastq (reads) 565.5 MB
ENCFF157MJN.tsv tsv (enrichment) 45.5 KB
ENCFF232CHY.tsv tsv (enrichment) 730.7 KB
ENCFF291VRH.tsv tsv (library fraction) 983.3 KB
ENCFF461NLU.tsv tsv (library fraction) 60.9 KB
ENCFF493XXL.tsv tsv (enrichment) 182.3 KB
ENCFF742YHB.tsv tsv (library fraction) 245.5 KB
ENCFF749TMN.bed bed (peaks) 380.5 KB
ENCFF795EZC.bed bed (peaks) 281.9 KB
ENCSR545AIK ENCSR · via encode_api

shRNA knockdown against PCBP1 in K562 cells followed by RNA-seq. (PCBP1-LV11)

Homo sapiens

92 data files
FileTypeSize
ENCFF002PPA.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF022NMD.bigWig bigWig (minus strand signal of unique reads) 95.2 MB
ENCFF026DPJ.bigWig bigWig (minus strand signal of all reads) 109.1 MB
ENCFF037QYR.bam bam (transcriptome alignments) 4.7 GB
ENCFF052BCE.bam bam (alignments) 3.2 GB
ENCFF054DEJ.bigWig bigWig (minus strand signal of unique reads) 86.3 MB
ENCFF055DXD.bigWig bigWig (plus strand signal of all reads) 108.2 MB
ENCFF087OCF.bigWig bigWig (minus strand signal of unique reads) 87.1 MB
ENCFF103QAY.bigWig bigWig (plus strand signal of all reads) 90.3 MB
ENCFF145RNB.bigWig bigWig (plus strand signal of unique reads) 98.7 MB
ENCFF160GVQ.bigWig bigWig (minus strand signal of all reads) 107.6 MB
ENCFF220UTY.tsv tsv (transcript quantifications) 29.8 MB
ENCFF227XAW.bam bam (alignments) 4.1 GB
ENCFF234TZQ.bigWig bigWig (plus strand signal of unique reads) 98.0 MB
ENCFF308VUM.bigWig bigWig (plus strand signal of all reads) 110.5 MB
ENCFF310EPT.tsv tsv (gene quantifications) 10.4 MB
ENCFF330LGP.bam bam (alignments) 4.3 GB
ENCFF337UZN.tsv tsv (transcript quantifications) 24.9 MB
ENCFF340EAO.bigWig bigWig (minus strand signal of unique reads) 96.1 MB
ENCFF347NPE.bigWig bigWig (minus strand signal of all reads) 109.1 MB
ENCFF352GAJ.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF356VBR.bigWig bigWig (minus strand signal of unique reads) 80.7 MB
ENCFF360SCH.tsv tsv (gene quantifications) 9.5 MB
ENCFF362TVS.tsv tsv (transcript quantifications) 29.8 MB
ENCFF374JYF.bigWig bigWig (plus strand signal of unique reads) 97.7 MB
ENCFF392QVK.tar tar (differential splicing quantifications) 3.5 MB
ENCFF425BAT.bam bam (alignments) 4.3 GB
ENCFF444WGK.tsv tsv (transcript quantifications) 25.3 MB
ENCFF447LKF.bam bam (alignments) 3.2 GB
ENCFF450NTX.tsv tsv (differential expression quantifications) 5.4 MB
ENCFF457TRV.bigWig bigWig (minus strand signal of all reads) 93.4 MB
ENCFF470PDX.bigWig bigWig (minus strand signal of all reads) 89.3 MB
ENCFF471LCT.bam bam (transcriptome alignments) 5.6 GB
ENCFF472JDR.bigWig bigWig (plus strand signal of unique reads) 84.5 MB
ENCFF472VBN.bigWig bigWig (minus strand signal of unique reads) 95.5 MB
ENCFF474ZWS.bigWig bigWig (minus strand signal of unique reads) 82.1 MB
ENCFF475BIR.bigWig bigWig (minus strand signal of unique reads) 95.4 MB
ENCFF476GIP.tsv tsv (gene quantifications) 9.1 MB
ENCFF483SSS.bigWig bigWig (minus strand signal of all reads) 95.4 MB
ENCFF485RQH.fastq fastq (reads) 2.2 GB
ENCFF527LCU.tsv tsv (transcript quantifications) 24.9 MB
ENCFF542ZPG.bigWig bigWig (plus strand signal of all reads) 109.4 MB
ENCFF549POS.tsv tsv (transcript quantifications) 25.3 MB
ENCFF560KLF.bam bam (alignments) 4.2 GB
ENCFF565MRB.bigWig bigWig (plus strand signal of unique reads) 97.8 MB
ENCFF574HJB.tsv tsv (transcript quantifications) 27.4 MB
ENCFF578FED.tsv tsv (gene quantifications) 9.5 MB
ENCFF578LVR.fastq fastq (reads) 2.3 GB
ENCFF603PWM.tsv tsv (transcript quantifications) 27.4 MB
ENCFF619JMP.bigWig bigWig (plus strand signal of unique reads) 89.4 MB
ENCFF625PGX.bigWig bigWig (plus strand signal of all reads) 109.4 MB
ENCFF626YUT.bam bam (alignments) 4.2 GB
ENCFF640CTZ.bigWig bigWig (minus strand signal of all reads) 108.0 MB
ENCFF644HYW.bam bam (alignments) 4.1 GB
ENCFF645CJR.tsv tsv (gene quantifications) 10.4 MB
ENCFF658QAJ.bam bam (transcriptome alignments) 4.7 GB
ENCFF677KWG.tsv tsv (differential expression quantifications) 4.2 MB
ENCFF678PSD.tar tar (differential splicing quantifications) 4.1 MB
ENCFF704OXD.bam bam (transcriptome alignments) 4.8 GB
ENCFF710KDJ.fastq fastq (reads) 2.3 GB
ENCFF716GSY.tsv tsv (differential expression quantifications) 2.7 MB
ENCFF717EID.bigWig bigWig (plus strand signal of all reads) 95.9 MB
ENCFF720IDC.bam bam (alignments) 3.2 GB
ENCFF723ZJI.bam bam (alignments) 3.2 GB
ENCFF725QHV.bigWig bigWig (plus strand signal of all reads) 109.0 MB
ENCFF727SVS.bigWig bigWig (plus strand signal of unique reads) 88.4 MB
ENCFF749KTR.bigWig bigWig (plus strand signal of all reads) 97.2 MB
ENCFF794NYQ.tsv tsv (gene quantifications) 9.1 MB
ENCFF800TIG.bigWig bigWig (plus strand signal of all reads) 94.7 MB
ENCFF803DJG.bigWig bigWig (plus strand signal of unique reads) 97.6 MB
ENCFF803NGS.bam bam (transcriptome alignments) 5.7 GB
ENCFF836BME.bigWig bigWig (minus strand signal of unique reads) 95.6 MB
ENCFF843TYO.bigWig bigWig (minus strand signal of unique reads) 85.6 MB
ENCFF844PYU.bigWig bigWig (plus strand signal of unique reads) 97.8 MB
ENCFF858AQM.bigWig bigWig (minus strand signal of unique reads) 95.3 MB
ENCFF861SBT.bigWig bigWig (plus strand signal of unique reads) 87.6 MB
ENCFF864JKA.bam bam (transcriptome alignments) 4.7 GB
ENCFF865EBU.bigWig bigWig (minus strand signal of all reads) 94.5 MB
ENCFF884BUZ.bam bam (alignments) 3.2 GB
ENCFF891EMJ.bigWig bigWig (plus strand signal of unique reads) 83.0 MB
ENCFF893TMZ.bigWig bigWig (minus strand signal of all reads) 106.8 MB
ENCFF894ZLI.fastq fastq (reads) 2.2 GB
ENCFF916HMO.bigWig bigWig (plus strand signal of unique reads) 88.4 MB
ENCFF930BJC.bigWig bigWig (plus strand signal of all reads) 110.5 MB
ENCFF933GCD.bigWig bigWig (minus strand signal of unique reads) 86.1 MB
ENCFF944WFA.bigWig bigWig (minus strand signal of all reads) 95.0 MB
ENCFF946HJE.bam bam (alignments) 3.2 GB
ENCFF948PWC.bigWig bigWig (minus strand signal of all reads) 88.6 MB
ENCFF948QYW.tar tar (differential splicing quantifications) 15.8 MB
ENCFF957SAK.bigWig bigWig (minus strand signal of all reads) 108.0 MB
ENCFF966FXP.bigWig bigWig (plus strand signal of all reads) 96.7 MB
ENCFF972TZE.bigWig bigWig (plus strand signal of all reads) 90.9 MB
ENCSR000KYM ENCSR · via encode_api

shRNA knockdown against DDX3X in K562 cells followed by RNA-seq. (DDX3X-LV08)

Homo sapiens

92 data files
FileTypeSize
ENCFF012MQN.bigWig bigWig (minus strand signal of unique reads) 79.8 MB
ENCFF013BJR.bigWig bigWig (plus strand signal of all reads) 91.1 MB
ENCFF033RPZ.bigWig bigWig (minus strand signal of unique reads) 79.0 MB
ENCFF038TCF.bigWig bigWig (plus strand signal of unique reads) 81.1 MB
ENCFF050NNW.bigWig bigWig (plus strand signal of all reads) 92.3 MB
ENCFF054DWB.bam bam (alignments) 3.5 GB
ENCFF061QCC.bigWig bigWig (plus strand signal of unique reads) 82.0 MB
ENCFF077RCB.bigWig bigWig (minus strand signal of unique reads) 74.4 MB
ENCFF109HFB.tsv tsv (transcript quantifications) 24.9 MB
ENCFF109RMW.bam bam (alignments) 4.3 GB
ENCFF109ZTR.bam bam (transcriptome alignments) 4.8 GB
ENCFF112MLP.bam bam (transcriptome alignments) 4.9 GB
ENCFF112UVI.bigWig bigWig (plus strand signal of all reads) 80.8 MB
ENCFF140MAI.tsv tsv (transcript quantifications) 25.3 MB
ENCFF156AHV.tar tar (differential splicing quantifications) 3.3 MB
ENCFF164VSX.bigWig bigWig (plus strand signal of unique reads) 72.8 MB
ENCFF184WBK.bigWig bigWig (plus strand signal of all reads) 82.6 MB
ENCFF196LTL.bigWig bigWig (minus strand signal of unique reads) 74.4 MB
ENCFF233BGJ.bam bam (transcriptome alignments) 5.5 GB
ENCFF239DXD.tsv tsv (transcript quantifications) 24.9 MB
ENCFF241JHG.bigWig bigWig (minus strand signal of all reads) 88.5 MB
ENCFF243AMZ.bam bam (alignments) 3.6 GB
ENCFF292ZLK.bam bam (alignments) 3.4 GB
ENCFF303ZST.bam bam (alignments) 4.0 GB
ENCFF329SEN.bigWig bigWig (plus strand signal of unique reads) 80.7 MB
ENCFF341QSB.bigWig bigWig (minus strand signal of unique reads) 78.9 MB
ENCFF343PQZ.bam bam (alignments) 3.6 GB
ENCFF349ERK.tsv tsv (gene quantifications) 9.5 MB
ENCFF352KOT.bam bam (alignments) 4.5 GB
ENCFF352LAX.tsv tsv (transcript quantifications) 29.8 MB
ENCFF354JPP.bam bam (alignments) 3.4 GB
ENCFF372JEF.bigWig bigWig (minus strand signal of unique reads) 70.2 MB
ENCFF391KMQ.bigWig bigWig (minus strand signal of all reads) 76.7 MB
ENCFF392YSG.bigWig bigWig (plus strand signal of unique reads) 76.0 MB
ENCFF396EJS.bigWig bigWig (minus strand signal of all reads) 79.4 MB
ENCFF452DBV.bigWig bigWig (minus strand signal of all reads) 89.4 MB
ENCFF461GCU.bigWig bigWig (minus strand signal of unique reads) 74.0 MB
ENCFF461NVU.tsv tsv (gene quantifications) 10.4 MB
ENCFF470KGD.tar tar (differential splicing quantifications) 16.1 MB
ENCFF479KRP.tsv tsv (gene quantifications) 9.1 MB
ENCFF497EYP.fastq fastq (reads) 2.3 GB
ENCFF498GBW.bigWig bigWig (plus strand signal of unique reads) 76.6 MB
ENCFF509GSE.fastq fastq (reads) 2.3 GB
ENCFF512BEG.tsv tsv (gene quantifications) 10.4 MB
ENCFF522EHU.bigWig bigWig (minus strand signal of all reads) 79.3 MB
ENCFF522GYG.bigWig bigWig (minus strand signal of unique reads) 78.6 MB
ENCFF531JLY.tsv tsv (gene quantifications) 9.5 MB
ENCFF546UFH.bam bam (transcriptome alignments) 4.9 GB
ENCFF557AYP.bigWig bigWig (minus strand signal of unique reads) 79.6 MB
ENCFF569LWF.fastq fastq (reads) 2.2 GB
ENCFF577MBL.bigWig bigWig (minus strand signal of all reads) 81.1 MB
ENCFF592LTU.tsv tsv (transcript quantifications) 27.4 MB
ENCFF607NIJ.bigWig bigWig (plus strand signal of all reads) 90.9 MB
ENCFF609NES.bigWig bigWig (minus strand signal of all reads) 90.8 MB
ENCFF611CLD.bam bam (alignments) 4.2 GB
ENCFF625HXM.tsv tsv (transcript quantifications) 29.8 MB
ENCFF663ZTP.bigWig bigWig (plus strand signal of unique reads) 75.9 MB
ENCFF671ZVB.fastq fastq (reads) 2.1 GB
ENCFF680OKH.bigWig bigWig (plus strand signal of all reads) 92.3 MB
ENCFF685RKA.tsv tsv (transcript quantifications) 25.3 MB
ENCFF695SFQ.bigWig bigWig (plus strand signal of all reads) 80.7 MB
ENCFF698OVX.bigWig bigWig (plus strand signal of all reads) 78.5 MB
ENCFF700KWQ.bam bam (transcriptome alignments) 4.3 GB
ENCFF738BQN.tsv tsv (gene quantifications) 9.1 MB
ENCFF767ABD.bam bam (alignments) 4.2 GB
ENCFF775QOT.bigWig bigWig (plus strand signal of all reads) 82.8 MB
ENCFF781DWD.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF782IBL.bigWig bigWig (plus strand signal of unique reads) 76.6 MB
ENCFF792IQR.bam bam (transcriptome alignments) 4.4 GB
ENCFF792SNR.bigWig bigWig (plus strand signal of unique reads) 81.2 MB
ENCFF808OJK.tsv tsv (differential expression quantifications) 4.2 MB
ENCFF810CIG.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF837WSY.bigWig bigWig (plus strand signal of all reads) 89.9 MB
ENCFF843ZLE.tsv tsv (differential expression quantifications) 5.4 MB
ENCFF861RNN.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF863DES.bam bam (alignments) 3.7 GB
ENCFF872WLQ.bigWig bigWig (minus strand signal of unique reads) 73.9 MB
ENCFF899NXW.bigWig bigWig (minus strand signal of all reads) 80.9 MB
ENCFF907HVC.tar tar (differential splicing quantifications) 3.8 MB
ENCFF923GLS.bigWig bigWig (plus strand signal of all reads) 78.3 MB
ENCFF923QNP.bigWig bigWig (plus strand signal of unique reads) 82.0 MB
ENCFF924XOJ.bigWig bigWig (minus strand signal of unique reads) 78.3 MB
ENCFF926YYV.bigWig bigWig (minus strand signal of unique reads) 70.6 MB
ENCFF930UIK.bam bam (alignments) 4.5 GB
ENCFF933LRM.bigWig bigWig (minus strand signal of all reads) 89.6 MB
ENCFF933YZY.bigWig bigWig (minus strand signal of all reads) 76.9 MB
ENCFF939YMX.tsv tsv (transcript quantifications) 27.4 MB
ENCFF949TMQ.bigWig bigWig (plus strand signal of all reads) 90.9 MB
ENCFF973CUE.bigWig bigWig (minus strand signal of all reads) 89.4 MB
ENCFF978UGK.bigWig bigWig (minus strand signal of all reads) 90.8 MB
ENCFF986PVS.bigWig bigWig (plus strand signal of unique reads) 80.7 MB
ENCFF987MES.bigWig bigWig (plus strand signal of unique reads) 72.3 MB
ENCSR373KOF ENCSR · via encode_api

shRNA knockdown against FUBP3 in K562 cells followed by RNA-seq. (FUBP3-LV08)

Homo sapiens

92 data files
FileTypeSize
ENCFF004ZKS.bigWig bigWig (plus strand signal of unique reads) 89.8 MB
ENCFF015AKS.bigWig bigWig (plus strand signal of unique reads) 77.4 MB
ENCFF025IAH.tsv tsv (differential expression quantifications) 5.4 MB
ENCFF025ONT.tsv tsv (differential expression quantifications) 4.1 MB
ENCFF035CIJ.bigWig bigWig (plus strand signal of unique reads) 78.2 MB
ENCFF049AIP.tsv tsv (transcript quantifications) 25.3 MB
ENCFF066SSG.bam bam (alignments) 4.2 GB
ENCFF072YMB.bam bam (alignments) 4.4 GB
ENCFF082PPW.bigWig bigWig (minus strand signal of unique reads) 81.0 MB
ENCFF124FQS.bigWig bigWig (plus strand signal of all reads) 92.8 MB
ENCFF125ZXA.bigWig bigWig (plus strand signal of unique reads) 84.3 MB
ENCFF129QSH.bigWig bigWig (plus strand signal of all reads) 83.9 MB
ENCFF137YRL.bigWig bigWig (minus strand signal of unique reads) 87.2 MB
ENCFF161CJT.bam bam (transcriptome alignments) 5.3 GB
ENCFF167ETL.bam bam (alignments) 3.6 GB
ENCFF171PED.tsv tsv (differential expression quantifications) 2.8 MB
ENCFF173CHW.bam bam (alignments) 4.7 GB
ENCFF214OEI.tsv tsv (gene quantifications) 10.4 MB
ENCFF218YFF.bigWig bigWig (minus strand signal of all reads) 97.2 MB
ENCFF221WUI.bigWig bigWig (plus strand signal of unique reads) 83.2 MB
ENCFF236ZEA.bigWig bigWig (minus strand signal of unique reads) 80.3 MB
ENCFF257GGO.bigWig bigWig (minus strand signal of unique reads) 86.4 MB
ENCFF267TUJ.tsv tsv (transcript quantifications) 25.3 MB
ENCFF274JSY.bam bam (alignments) 3.6 GB
ENCFF289GGZ.bigWig bigWig (plus strand signal of all reads) 94.5 MB
ENCFF297TMW.bam bam (alignments) 4.4 GB
ENCFF331RML.tsv tsv (transcript quantifications) 24.9 MB
ENCFF343WLM.tsv tsv (gene quantifications) 10.4 MB
ENCFF368JCL.bigWig bigWig (minus strand signal of all reads) 93.0 MB
ENCFF371ZEU.bam bam (transcriptome alignments) 4.7 GB
ENCFF374EST.bigWig bigWig (plus strand signal of unique reads) 84.0 MB
ENCFF374PZB.bigWig bigWig (minus strand signal of all reads) 99.0 MB
ENCFF381LAI.bigWig bigWig (minus strand signal of all reads) 82.2 MB
ENCFF385XRM.bigWig bigWig (minus strand signal of all reads) 99.0 MB
ENCFF392NAR.bam bam (transcriptome alignments) 4.7 GB
ENCFF404FXV.tsv tsv (gene quantifications) 9.5 MB
ENCFF415OYO.bigWig bigWig (plus strand signal of all reads) 80.2 MB
ENCFF419IHT.bigWig bigWig (plus strand signal of all reads) 84.3 MB
ENCFF426AGC.bigWig bigWig (plus strand signal of all reads) 100.7 MB
ENCFF432FME.tsv tsv (transcript quantifications) 24.9 MB
ENCFF449ZJY.bam bam (alignments) 3.7 GB
ENCFF461WWG.bigWig bigWig (plus strand signal of all reads) 94.5 MB
ENCFF488JSY.fastq fastq (reads) 2.3 GB
ENCFF493XRK.bigWig bigWig (plus strand signal of unique reads) 77.5 MB
ENCFF508NSC.tar tar (differential splicing quantifications) 3.8 MB
ENCFF523PQW.bigWig bigWig (plus strand signal of all reads) 83.0 MB
ENCFF526FYU.bam bam (alignments) 3.9 GB
ENCFF533ZVR.bigWig bigWig (minus strand signal of all reads) 81.7 MB
ENCFF553MYG.bigWig bigWig (plus strand signal of unique reads) 83.5 MB
ENCFF568XDA.bigWig bigWig (minus strand signal of unique reads) 75.1 MB
ENCFF575JCB.bigWig bigWig (minus strand signal of all reads) 78.5 MB
ENCFF575SDY.tar tar (differential splicing quantifications) 3.3 MB
ENCFF591YLY.bigWig bigWig (plus strand signal of unique reads) 89.9 MB
ENCFF599UDK.bigWig bigWig (minus strand signal of unique reads) 82.0 MB
ENCFF603EME.bigWig bigWig (plus strand signal of unique reads) 82.6 MB
ENCFF616ZHV.tsv tsv (transcript quantifications) 29.8 MB
ENCFF624URW.bam bam (alignments) 4.7 GB
ENCFF643ZWP.bam bam (transcriptome alignments) 5.3 GB
ENCFF657HWH.bigWig bigWig (minus strand signal of unique reads) 75.4 MB
ENCFF662JYI.bam bam (alignments) 4.4 GB
ENCFF673QQS.tar tar (differential splicing quantifications) 15.8 MB
ENCFF708YNY.fastq fastq (reads) 2.4 GB
ENCFF711TMH.bigWig bigWig (minus strand signal of all reads) 82.5 MB
ENCFF718BEC.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF721KDE.fastq fastq (reads) 2.3 GB
ENCFF741EDO.bigWig bigWig (plus strand signal of all reads) 100.7 MB
ENCFF760KJW.bigWig bigWig (minus strand signal of all reads) 88.0 MB
ENCFF762BOX.bigWig bigWig (plus strand signal of all reads) 89.9 MB
ENCFF787JQZ.tsv tsv (transcript quantifications) 29.8 MB
ENCFF789TFH.tsv tsv (gene quantifications) 9.1 MB
ENCFF790XZJ.bam bam (transcriptome alignments) 4.7 GB
ENCFF812ALJ.tsv tsv (gene quantifications) 9.1 MB
ENCFF812NZC.bam bam (transcriptome alignments) 4.7 GB
ENCFF827LDX.tsv tsv (transcript quantifications) 27.4 MB
ENCFF835EZV.bigWig bigWig (plus strand signal of unique reads) 74.4 MB
ENCFF839IEZ.tsv tsv (differential expression quantifications) 1.6 MB
ENCFF850SRP.bigWig bigWig (plus strand signal of unique reads) 89.1 MB
ENCFF857PLG.bigWig bigWig (plus strand signal of all reads) 98.9 MB
ENCFF866CGP.bigWig bigWig (minus strand signal of unique reads) 80.8 MB
ENCFF869JVU.bigWig bigWig (minus strand signal of unique reads) 75.8 MB
ENCFF871ARC.bam bam (alignments) 3.8 GB
ENCFF879IZV.bigWig bigWig (minus strand signal of all reads) 87.1 MB
ENCFF897UVO.tsv tsv (transcript quantifications) 27.4 MB
ENCFF913GZD.bam bam (alignments) 3.8 GB
ENCFF914EHQ.bigWig bigWig (minus strand signal of unique reads) 72.1 MB
ENCFF936JJF.tsv tsv (gene quantifications) 9.4 MB
ENCFF944QHH.bigWig bigWig (minus strand signal of unique reads) 81.4 MB
ENCFF949AMQ.bigWig bigWig (minus strand signal of all reads) 91.2 MB
ENCFF953YVM.bigWig bigWig (plus strand signal of all reads) 88.6 MB
ENCFF969NCE.bigWig bigWig (minus strand signal of all reads) 93.0 MB
ENCFF986EEV.fastq fastq (reads) 2.4 GB
ENCFF988URK.bigWig bigWig (minus strand signal of unique reads) 87.2 MB
ENCSR849STR ENCSR · via encode_api

shRNA knockdown against MAGOH in K562 cells followed by RNA-seq. (MAGOH-LV11)

Homo sapiens

92 data files
FileTypeSize
ENCFF018ABK.bam bam (transcriptome alignments) 3.9 GB
ENCFF026MOR.bam bam (transcriptome alignments) 4.0 GB
ENCFF032KCT.fastq fastq (reads) 2.0 GB
ENCFF040TNO.bigWig bigWig (minus strand signal of unique reads) 86.7 MB
ENCFF049TUY.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF083UVM.bigWig bigWig (plus strand signal of all reads) 105.0 MB
ENCFF092WKD.bigWig bigWig (plus strand signal of all reads) 108.6 MB
ENCFF125HDY.tar tar (differential splicing quantifications) 5.2 MB
ENCFF126OWV.bigWig bigWig (plus strand signal of all reads) 104.1 MB
ENCFF129XDN.tsv tsv (transcript quantifications) 25.3 MB
ENCFF136AJK.bigWig bigWig (minus strand signal of all reads) 94.1 MB
ENCFF142EBL.tsv tsv (transcript quantifications) 25.3 MB
ENCFF147RHT.bigWig bigWig (minus strand signal of all reads) 84.6 MB
ENCFF161UUI.bam bam (transcriptome alignments) 5.9 GB
ENCFF176EYB.tar tar (differential splicing quantifications) 15.7 MB
ENCFF184LBV.bam bam (alignments) 3.3 GB
ENCFF198IIU.bigWig bigWig (plus strand signal of all reads) 90.7 MB
ENCFF205ZER.bigWig bigWig (plus strand signal of unique reads) 96.0 MB
ENCFF209AAT.bigWig bigWig (plus strand signal of unique reads) 87.6 MB
ENCFF222AVV.bigWig bigWig (minus strand signal of all reads) 89.4 MB
ENCFF222OIC.bigWig bigWig (plus strand signal of all reads) 108.6 MB
ENCFF234PGH.bigWig bigWig (minus strand signal of unique reads) 77.5 MB
ENCFF245QUE.fastq fastq (reads) 2.4 GB
ENCFF262XNL.tsv tsv (transcript quantifications) 24.9 MB
ENCFF273DJZ.bigWig bigWig (minus strand signal of all reads) 107.5 MB
ENCFF283GKG.tsv tsv (transcript quantifications) 29.8 MB
ENCFF286GKQ.bam bam (alignments) 2.8 GB
ENCFF292DNZ.bigWig bigWig (minus strand signal of unique reads) 93.9 MB
ENCFF301WKI.bam bam (alignments) 3.3 GB
ENCFF317ZSO.bigWig bigWig (minus strand signal of all reads) 91.4 MB
ENCFF327CYR.bigWig bigWig (plus strand signal of unique reads) 79.6 MB
ENCFF327TCI.bigWig bigWig (plus strand signal of all reads) 92.8 MB
ENCFF331DNX.bigWig bigWig (plus strand signal of all reads) 107.2 MB
ENCFF336GDV.bigWig bigWig (plus strand signal of all reads) 85.9 MB
ENCFF342DRM.bigWig bigWig (minus strand signal of unique reads) 94.8 MB
ENCFF347FEK.bam bam (alignments) 2.9 GB
ENCFF362VKV.bigWig bigWig (minus strand signal of all reads) 88.9 MB
ENCFF386XTJ.tsv tsv (differential expression quantifications) 4.3 MB
ENCFF395LLU.bigWig bigWig (plus strand signal of unique reads) 97.0 MB
ENCFF397JZA.bigWig bigWig (minus strand signal of all reads) 106.1 MB
ENCFF409IDX.bigWig bigWig (plus strand signal of unique reads) 93.3 MB
ENCFF412QQE.bigWig bigWig (plus strand signal of all reads) 90.2 MB
ENCFF419LBZ.tar tar (differential splicing quantifications) 4.3 MB
ENCFF421PCQ.bigWig bigWig (minus strand signal of unique reads) 91.7 MB
ENCFF443MFC.bigWig bigWig (plus strand signal of unique reads) 96.6 MB
ENCFF467EKE.bigWig bigWig (minus strand signal of unique reads) 91.4 MB
ENCFF471TFF.tsv tsv (transcript quantifications) 24.8 MB
ENCFF483BNC.tsv tsv (transcript quantifications) 29.8 MB
ENCFF495HGT.bam bam (transcriptome alignments) 4.7 GB
ENCFF499XVN.tsv tsv (gene quantifications) 10.4 MB
ENCFF502HVW.bam bam (alignments) 4.4 GB
ENCFF512VYQ.bigWig bigWig (plus strand signal of unique reads) 88.9 MB
ENCFF514YXO.bigWig bigWig (plus strand signal of all reads) 92.9 MB
ENCFF527QHY.tsv tsv (gene quantifications) 9.1 MB
ENCFF549RAR.bam bam (alignments) 3.9 GB
ENCFF581DWW.bigWig bigWig (plus strand signal of unique reads) 84.3 MB
ENCFF585VNN.bam bam (alignments) 4.3 GB
ENCFF593VEX.tsv tsv (gene quantifications) 9.4 MB
ENCFF610VRU.tsv tsv (transcript quantifications) 27.4 MB
ENCFF668SGZ.fastq fastq (reads) 2.3 GB
ENCFF674YOE.bigWig bigWig (minus strand signal of unique reads) 83.4 MB
ENCFF677EAR.bigWig bigWig (minus strand signal of all reads) 104.9 MB
ENCFF708UBB.bigWig bigWig (minus strand signal of unique reads) 90.9 MB
ENCFF711OVI.tsv tsv (gene quantifications) 9.5 MB
ENCFF720SUJ.bigWig bigWig (plus strand signal of all reads) 95.6 MB
ENCFF726UGL.bigWig bigWig (plus strand signal of all reads) 105.0 MB
ENCFF726YXN.bigWig bigWig (plus strand signal of unique reads) 84.4 MB
ENCFF744GLI.bam bam (alignments) 3.9 GB
ENCFF746YTF.bigWig bigWig (minus strand signal of all reads) 105.7 MB
ENCFF791XGA.tsv tsv (gene quantifications) 10.4 MB
ENCFF796THO.bigWig bigWig (minus strand signal of all reads) 91.7 MB
ENCFF815VSZ.bam bam (alignments) 2.8 GB
ENCFF816HUZ.bigWig bigWig (plus strand signal of unique reads) 94.0 MB
ENCFF836KMF.bam bam (alignments) 4.4 GB
ENCFF843XVL.bigWig bigWig (minus strand signal of unique reads) 82.4 MB
ENCFF845EGX.bam bam (transcriptome alignments) 5.0 GB
ENCFF850ZOA.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF857TYH.tsv tsv (gene quantifications) 9.1 MB
ENCFF859OQL.bigWig bigWig (plus strand signal of unique reads) 93.7 MB
ENCFF875DER.bam bam (transcriptome alignments) 5.0 GB
ENCFF878XAY.tsv tsv (differential expression quantifications) 5.4 MB
ENCFF886ODG.bigWig bigWig (minus strand signal of unique reads) 94.5 MB
ENCFF897YVB.fastq fastq (reads) 1.9 GB
ENCFF905VUQ.tsv tsv (transcript quantifications) 27.4 MB
ENCFF906GSA.bam bam (alignments) 3.3 GB
ENCFF920DBF.bam bam (alignments) 3.6 GB
ENCFF927NXW.bigWig bigWig (plus strand signal of unique reads) 85.6 MB
ENCFF935ASY.tsv tsv (differential expression quantifications) 2.6 MB
ENCFF954TDK.bigWig bigWig (minus strand signal of all reads) 107.5 MB
ENCFF964DWM.bigWig bigWig (minus strand signal of all reads) 105.7 MB
ENCFF972YEP.bigWig bigWig (minus strand signal of unique reads) 85.8 MB
ENCFF973TXA.bigWig bigWig (minus strand signal of unique reads) 82.3 MB
ENCSR376SUZ ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) pulldown experiment against hnRNPF

11 data files
FileTypeSize
ENCFF002DEM.tsv tsv (enrichment) 60.0 KB
ENCFF002DEN.tsv tsv (enrichment) 244.0 KB
ENCFF002DEO.tsv tsv (enrichment) 992.0 KB
ENCFF002DEP.tsv tsv (library fraction) 76.3 KB
ENCFF002DEQ.tsv tsv (library fraction) 312.5 KB
ENCFF002DER.tsv tsv (library fraction) 1.2 MB
ENCFF002DGB.fastq fastq (reads) 626.0 MB
ENCFF002DGC.fastq fastq (reads) 597.5 MB
ENCFF002DGD.fastq fastq (reads) 620.4 MB
ENCFF002DGE.fastq fastq (reads) 544.2 MB
ENCFF002DGF.fastq fastq (reads) 641.5 MB
ENCSR094KBY ENCSR · via encode_api

shRNA knockdown against SRSF1 in HepG2 cells followed by RNA-seq. (SRSF1-BGHLV12)

Homo sapiens

92 data files
FileTypeSize
ENCFF004MKV.tsv tsv (transcript quantifications) 25.3 MB
ENCFF016UQF.bam bam (transcriptome alignments) 8.1 GB
ENCFF016YKS.bigWig bigWig (plus strand signal of all reads) 89.7 MB
ENCFF034SQW.bam bam (transcriptome alignments) 6.7 GB
ENCFF036UTA.bam bam (transcriptome alignments) 6.8 GB
ENCFF039ELH.bigWig bigWig (minus strand signal of unique reads) 85.5 MB
ENCFF046OGA.tsv tsv (transcript quantifications) 25.3 MB
ENCFF098AXX.bam bam (alignments) 5.7 GB
ENCFF107YLM.bigWig bigWig (plus strand signal of unique reads) 78.8 MB
ENCFF111PNX.bigWig bigWig (minus strand signal of unique reads) 90.0 MB
ENCFF133JTW.bigWig bigWig (minus strand signal of unique reads) 76.1 MB
ENCFF145QLT.bigWig bigWig (minus strand signal of all reads) 87.4 MB
ENCFF150SFN.bigWig bigWig (plus strand signal of all reads) 100.8 MB
ENCFF154ODB.tsv tsv (transcript quantifications) 29.8 MB
ENCFF161KZU.tsv tsv (transcript quantifications) 24.9 MB
ENCFF165LRF.bigWig bigWig (minus strand signal of all reads) 93.1 MB
ENCFF192GNC.bigWig bigWig (plus strand signal of all reads) 95.3 MB
ENCFF201QEY.tsv tsv (gene quantifications) 9.1 MB
ENCFF202RTM.bam bam (alignments) 5.7 GB
ENCFF216AQG.bigWig bigWig (minus strand signal of all reads) 93.8 MB
ENCFF222OEL.bigWig bigWig (plus strand signal of unique reads) 92.0 MB
ENCFF223XHU.bam bam (alignments) 4.9 GB
ENCFF226HVC.bigWig bigWig (plus strand signal of unique reads) 88.5 MB
ENCFF230ATB.bigWig bigWig (plus strand signal of unique reads) 84.0 MB
ENCFF252PGV.bigWig bigWig (minus strand signal of all reads) 98.3 MB
ENCFF254OON.tsv tsv (transcript quantifications) 29.8 MB
ENCFF275GBZ.bigWig bigWig (minus strand signal of all reads) 89.3 MB
ENCFF287YKD.bigWig bigWig (plus strand signal of unique reads) 91.9 MB
ENCFF306IDC.bam bam (transcriptome alignments) 9.0 GB
ENCFF321GRO.bam bam (alignments) 5.7 GB
ENCFF352QQN.bigWig bigWig (plus strand signal of unique reads) 83.2 MB
ENCFF361XQQ.bigWig bigWig (plus strand signal of all reads) 86.3 MB
ENCFF365QYN.bigWig bigWig (plus strand signal of all reads) 83.3 MB
ENCFF369OIG.bigWig bigWig (plus strand signal of all reads) 96.3 MB
ENCFF389NVF.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF390HIX.bigWig bigWig (minus strand signal of all reads) 84.1 MB
ENCFF391EKW.bigWig bigWig (plus strand signal of all reads) 91.5 MB
ENCFF395AYJ.bigWig bigWig (plus strand signal of all reads) 100.8 MB
ENCFF421VZA.tsv tsv (differential expression quantifications) 3.0 MB
ENCFF424GLT.bigWig bigWig (minus strand signal of unique reads) 85.0 MB
ENCFF424NXL.bigWig bigWig (plus strand signal of unique reads) 86.4 MB
ENCFF444CGZ.tsv tsv (differential expression quantifications) 1.8 MB
ENCFF448HND.bam bam (alignments) 4.9 GB
ENCFF456KPV.tsv tsv (gene quantifications) 10.4 MB
ENCFF463BEI.bigWig bigWig (minus strand signal of all reads) 93.8 MB
ENCFF500BOM.bigWig bigWig (minus strand signal of all reads) 91.1 MB
ENCFF528YDD.bigWig bigWig (minus strand signal of unique reads) 81.3 MB
ENCFF535TDK.bam bam (alignments) 5.7 GB
ENCFF544CWW.bigWig bigWig (plus strand signal of all reads) 96.3 MB
ENCFF566ISV.bigWig bigWig (plus strand signal of unique reads) 87.2 MB
ENCFF570EUL.bam bam (transcriptome alignments) 8.0 GB
ENCFF583MPY.fastq fastq (reads) 3.6 GB
ENCFF584HCH.tsv tsv (transcript quantifications) 27.3 MB
ENCFF591TZB.bigWig bigWig (minus strand signal of unique reads) 80.3 MB
ENCFF624WAO.bam bam (alignments) 6.6 GB
ENCFF640DMV.bigWig bigWig (plus strand signal of unique reads) 82.0 MB
ENCFF651GFP.tar tar (differential splicing quantifications) 4.8 MB
ENCFF651OWX.tar tar (differential splicing quantifications) 16.5 MB
ENCFF660AHX.bigWig bigWig (minus strand signal of all reads) 98.5 MB
ENCFF663YWS.bigWig bigWig (minus strand signal of all reads) 86.2 MB
ENCFF685SHX.bam bam (transcriptome alignments) 7.6 GB
ENCFF694NKE.bam bam (alignments) 6.6 GB
ENCFF699DCX.tsv tsv (transcript quantifications) 27.4 MB
ENCFF707GZQ.bam bam (alignments) 5.7 GB
ENCFF710CJN.bigWig bigWig (plus strand signal of unique reads) 88.4 MB
ENCFF711FKM.tsv tsv (gene quantifications) 10.4 MB
ENCFF712OPA.tsv tsv (gene quantifications) 9.4 MB
ENCFF714YYN.fastq fastq (reads) 3.1 GB
ENCFF715GIO.bigWig bigWig (minus strand signal of unique reads) 83.7 MB
ENCFF729PCF.fastq fastq (reads) 3.1 GB
ENCFF773NGI.bigWig bigWig (plus strand signal of unique reads) 93.1 MB
ENCFF801DDP.fastq fastq (reads) 3.7 GB
ENCFF807XXS.tsv tsv (differential expression quantifications) 4.5 MB
ENCFF826FTK.bam bam (alignments) 4.9 GB
ENCFF828DCC.bigWig bigWig (minus strand signal of unique reads) 84.3 MB
ENCFF829GDX.bigWig bigWig (minus strand signal of all reads) 81.1 MB
ENCFF856VSZ.bam bam (alignments) 5.6 GB
ENCFF866RIG.tar tar (differential splicing quantifications) 3.8 MB
ENCFF883QBC.tsv tsv (gene quantifications) 9.5 MB
ENCFF890NCB.tsv tsv (transcript quantifications) 24.9 MB
ENCFF903BHG.bigWig bigWig (minus strand signal of unique reads) 85.5 MB
ENCFF903RNR.bigWig bigWig (minus strand signal of all reads) 98.3 MB
ENCFF905YHR.bigWig bigWig (plus strand signal of all reads) 88.7 MB
ENCFF921HMS.tsv tsv (gene quantifications) 9.1 MB
ENCFF930NQD.bigWig bigWig (minus strand signal of unique reads) 89.1 MB
ENCFF942DHD.bam bam (alignments) 6.5 GB
ENCFF942ITI.bigWig bigWig (plus strand signal of all reads) 93.5 MB
ENCFF943EXM.bigWig bigWig (minus strand signal of unique reads) 79.4 MB
ENCFF952TMK.tsv tsv (differential expression quantifications) 2.0 MB
ENCFF959NVT.bigWig bigWig (minus strand signal of unique reads) 89.0 MB
ENCFF976IMR.bigWig bigWig (plus strand signal of unique reads) 88.0 MB
ENCFF986OCE.bigWig bigWig (plus strand signal of all reads) 100.8 MB
ENCSR792CBM ENCSR · via encode_api

shRNA knockdown against G3BP1 in K562 cells followed by RNA-seq. (G3BP1-LV11)

Homo sapiens

92 data files
FileTypeSize
ENCFF013ZKB.bigWig bigWig (minus strand signal of unique reads) 79.4 MB
ENCFF016JIF.tsv tsv (transcript quantifications) 29.8 MB
ENCFF048TGM.bigWig bigWig (plus strand signal of unique reads) 82.0 MB
ENCFF055EEK.bam bam (alignments) 3.8 GB
ENCFF073KJP.bigWig bigWig (minus strand signal of all reads) 105.4 MB
ENCFF080COW.bam bam (transcriptome alignments) 4.6 GB
ENCFF081TGR.tsv tsv (transcript quantifications) 27.3 MB
ENCFF083WIX.bigWig bigWig (minus strand signal of unique reads) 91.5 MB
ENCFF095OYE.bam bam (alignments) 3.8 GB
ENCFF097ZRQ.bigWig bigWig (plus strand signal of unique reads) 87.3 MB
ENCFF101RYJ.tsv tsv (gene quantifications) 10.4 MB
ENCFF115QVG.bigWig bigWig (minus strand signal of unique reads) 94.0 MB
ENCFF129BBI.bigWig bigWig (minus strand signal of all reads) 91.7 MB
ENCFF142LDZ.bigWig bigWig (minus strand signal of unique reads) 92.1 MB
ENCFF159YAB.fastq fastq (reads) 2.0 GB
ENCFF164CWO.bigWig bigWig (plus strand signal of unique reads) 96.5 MB
ENCFF167FNS.tsv tsv (transcript quantifications) 29.8 MB
ENCFF182YIO.bam bam (alignments) 3.2 GB
ENCFF184PZX.bigWig bigWig (minus strand signal of all reads) 112.9 MB
ENCFF208HNO.bigWig bigWig (plus strand signal of all reads) 96.3 MB
ENCFF210FGE.tsv tsv (transcript quantifications) 24.9 MB
ENCFF212IRR.bam bam (transcriptome alignments) 4.2 GB
ENCFF216VDD.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF256ODT.bam bam (alignments) 4.1 GB
ENCFF257JST.bigWig bigWig (plus strand signal of all reads) 99.6 MB
ENCFF269IHX.bigWig bigWig (plus strand signal of unique reads) 96.3 MB
ENCFF276DWL.bigWig bigWig (plus strand signal of all reads) 95.3 MB
ENCFF282EOB.bam bam (alignments) 2.9 GB
ENCFF289CHF.bam bam (alignments) 2.8 GB
ENCFF289ONV.tsv tsv (gene quantifications) 9.5 MB
ENCFF308FWN.bigWig bigWig (plus strand signal of all reads) 89.2 MB
ENCFF309THL.fastq fastq (reads) 2.2 GB
ENCFF332BZT.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF352FXJ.bigWig bigWig (minus strand signal of unique reads) 92.7 MB
ENCFF361PXF.bigWig bigWig (plus strand signal of unique reads) 88.1 MB
ENCFF362AEH.tsv tsv (differential expression quantifications) 1.6 MB
ENCFF411EZZ.bigWig bigWig (plus strand signal of all reads) 107.0 MB
ENCFF415PEQ.bigWig bigWig (plus strand signal of all reads) 113.9 MB
ENCFF435AER.bigWig bigWig (plus strand signal of all reads) 114.8 MB
ENCFF436YQI.bigWig bigWig (plus strand signal of all reads) 107.0 MB
ENCFF439AJQ.bam bam (alignments) 3.2 GB
ENCFF439YKO.bigWig bigWig (plus strand signal of all reads) 93.2 MB
ENCFF444TUV.bigWig bigWig (plus strand signal of all reads) 101.1 MB
ENCFF444YJF.tar tar (differential splicing quantifications) 15.2 MB
ENCFF450RHL.bam bam (alignments) 4.3 GB
ENCFF465MSE.tsv tsv (gene quantifications) 9.4 MB
ENCFF468OXM.bigWig bigWig (plus strand signal of unique reads) 94.1 MB
ENCFF508MHW.bigWig bigWig (plus strand signal of unique reads) 101.9 MB
ENCFF514HLP.tsv tsv (gene quantifications) 9.1 MB
ENCFF523FOB.bigWig bigWig (minus strand signal of unique reads) 84.5 MB
ENCFF523MLI.bigWig bigWig (minus strand signal of unique reads) 85.8 MB
ENCFF548DTY.bigWig bigWig (minus strand signal of all reads) 113.0 MB
ENCFF592ZQK.bam bam (transcriptome alignments) 5.4 GB
ENCFF607HMB.bigWig bigWig (minus strand signal of all reads) 99.0 MB
ENCFF609BKM.bam bam (transcriptome alignments) 4.2 GB
ENCFF609KRJ.tar tar (differential splicing quantifications) 3.2 MB
ENCFF614HBA.bigWig bigWig (plus strand signal of unique reads) 103.0 MB
ENCFF620RSG.tsv tsv (gene quantifications) 9.1 MB
ENCFF639OVB.bigWig bigWig (minus strand signal of all reads) 105.2 MB
ENCFF694AFX.fastq fastq (reads) 2.0 GB
ENCFF697QXB.bam bam (transcriptome alignments) 4.9 GB
ENCFF698KXR.tar tar (differential splicing quantifications) 3.7 MB
ENCFF719AAX.tsv tsv (transcript quantifications) 25.3 MB
ENCFF726ZZI.bigWig bigWig (minus strand signal of unique reads) 86.8 MB
ENCFF731LVA.bigWig bigWig (minus strand signal of all reads) 105.4 MB
ENCFF738HPA.bigWig bigWig (plus strand signal of all reads) 114.6 MB
ENCFF753NPG.bam bam (alignments) 3.7 GB
ENCFF754WVU.bigWig bigWig (minus strand signal of unique reads) 99.0 MB
ENCFF756JXR.tsv tsv (differential expression quantifications) 4.2 MB
ENCFF763TLB.bigWig bigWig (minus strand signal of unique reads) 99.4 MB
ENCFF765MMZ.bigWig bigWig (minus strand signal of all reads) 112.1 MB
ENCFF782KLL.bigWig bigWig (plus strand signal of unique reads) 95.2 MB
ENCFF805WWF.tsv tsv (transcript quantifications) 24.9 MB
ENCFF818USX.bam bam (alignments) 3.1 GB
ENCFF819WNN.bigWig bigWig (plus strand signal of unique reads) 89.4 MB
ENCFF826KLH.bigWig bigWig (plus strand signal of unique reads) 102.3 MB
ENCFF830GTV.tsv tsv (transcript quantifications) 27.4 MB
ENCFF837ROC.tsv tsv (gene quantifications) 10.4 MB
ENCFF838XHX.bam bam (alignments) 4.3 GB
ENCFF859YVO.bigWig bigWig (minus strand signal of all reads) 94.4 MB
ENCFF876YQC.bam bam (transcriptome alignments) 4.5 GB
ENCFF891IDI.bigWig bigWig (minus strand signal of all reads) 98.0 MB
ENCFF905EGG.bigWig bigWig (minus strand signal of all reads) 93.3 MB
ENCFF905UVV.bam bam (alignments) 2.8 GB
ENCFF919GGW.bigWig bigWig (plus strand signal of unique reads) 94.9 MB
ENCFF920FGG.bigWig bigWig (minus strand signal of all reads) 87.5 MB
ENCFF938XMJ.bigWig bigWig (minus strand signal of unique reads) 93.6 MB
ENCFF939NUB.tsv tsv (differential expression quantifications) 5.4 MB
ENCFF946KMA.tsv tsv (transcript quantifications) 25.3 MB
ENCFF960URG.bigWig bigWig (minus strand signal of unique reads) 99.9 MB
ENCFF996JYA.fastq fastq (reads) 2.3 GB
ENCFF999SPA.bigWig bigWig (plus strand signal of all reads) 106.8 MB
ENCSR056QEW ENCSR · via encode_api

shRNA knockdown against CIRBP in K562 cells followed by RNA-seq. (CIRBP-LV11)

Homo sapiens

92 data files
FileTypeSize
ENCFF005RSE.bigWig bigWig (minus strand signal of all reads) 91.2 MB
ENCFF006DJP.bigWig bigWig (plus strand signal of unique reads) 90.3 MB
ENCFF009MBZ.bam bam (alignments) 5.5 GB
ENCFF010FIG.bigWig bigWig (plus strand signal of unique reads) 87.1 MB
ENCFF016HNZ.tsv tsv (transcript quantifications) 24.9 MB
ENCFF016RAX.tsv tsv (transcript quantifications) 29.8 MB
ENCFF030AHD.bigWig bigWig (minus strand signal of all reads) 113.1 MB
ENCFF039ARD.bigWig bigWig (plus strand signal of all reads) 95.7 MB
ENCFF039ZUW.bam bam (transcriptome alignments) 5.3 GB
ENCFF049KLN.bam bam (alignments) 4.6 GB
ENCFF056ZAN.bam bam (transcriptome alignments) 6.3 GB
ENCFF057IVI.tsv tsv (differential expression quantifications) 5.4 MB
ENCFF057ZJZ.tsv tsv (transcript quantifications) 27.4 MB
ENCFF074NLL.tsv tsv (gene quantifications) 10.4 MB
ENCFF079DSO.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF085OBP.tsv tsv (gene quantifications) 9.1 MB
ENCFF113DOA.bigWig bigWig (plus strand signal of all reads) 114.4 MB
ENCFF114DUV.tsv tsv (transcript quantifications) 27.4 MB
ENCFF116OLN.tar tar (differential splicing quantifications) 3.4 MB
ENCFF133VPG.bigWig bigWig (minus strand signal of all reads) 99.0 MB
ENCFF156ABD.bigWig bigWig (minus strand signal of unique reads) 84.7 MB
ENCFF173MUW.bam bam (alignments) 3.6 GB
ENCFF214PMX.tsv tsv (differential expression quantifications) 4.2 MB
ENCFF221ZPP.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF228ZQL.bigWig bigWig (minus strand signal of unique reads) 97.0 MB
ENCFF239KFN.bam bam (alignments) 4.0 GB
ENCFF248CJO.tsv tsv (transcript quantifications) 25.3 MB
ENCFF285GZE.bigWig bigWig (minus strand signal of unique reads) 88.1 MB
ENCFF290WAD.bigWig bigWig (minus strand signal of all reads) 96.6 MB
ENCFF292DEA.bigWig bigWig (plus strand signal of unique reads) 92.4 MB
ENCFF294CHG.bigWig bigWig (plus strand signal of all reads) 114.4 MB
ENCFF302BCI.fastq fastq (reads) 2.5 GB
ENCFF328UWE.bigWig bigWig (plus strand signal of all reads) 111.9 MB
ENCFF333KKE.bigWig bigWig (plus strand signal of unique reads) 98.8 MB
ENCFF338LWZ.tsv tsv (gene quantifications) 9.1 MB
ENCFF346GGM.bam bam (transcriptome alignments) 5.0 GB
ENCFF349QSV.tsv tsv (transcript quantifications) 24.9 MB
ENCFF357IKK.bigWig bigWig (plus strand signal of all reads) 94.7 MB
ENCFF360PWV.bigWig bigWig (plus strand signal of all reads) 109.9 MB
ENCFF402DYT.bigWig bigWig (minus strand signal of all reads) 110.8 MB
ENCFF410OHI.fastq fastq (reads) 2.6 GB
ENCFF441DAW.tar tar (differential splicing quantifications) 16.0 MB
ENCFF447XRQ.tar tar (differential splicing quantifications) 4.0 MB
ENCFF453UWA.bigWig bigWig (plus strand signal of all reads) 92.7 MB
ENCFF461ECH.bigWig bigWig (minus strand signal of all reads) 93.1 MB
ENCFF480UJO.bam bam (transcriptome alignments) 5.4 GB
ENCFF481VXO.bigWig bigWig (plus strand signal of unique reads) 100.8 MB
ENCFF496ARR.bam bam (alignments) 3.4 GB
ENCFF497SFB.bigWig bigWig (plus strand signal of unique reads) 101.3 MB
ENCFF502NQN.bigWig bigWig (minus strand signal of unique reads) 96.8 MB
ENCFF532FZD.fastq fastq (reads) 2.4 GB
ENCFF536ZCM.bigWig bigWig (plus strand signal of all reads) 97.6 MB
ENCFF542WQG.bigWig bigWig (plus strand signal of unique reads) 93.2 MB
ENCFF552GNU.bigWig bigWig (plus strand signal of all reads) 111.9 MB
ENCFF553WDU.bigWig bigWig (plus strand signal of all reads) 98.3 MB
ENCFF590LBH.tsv tsv (gene quantifications) 9.5 MB
ENCFF599VTT.bam bam (alignments) 3.5 GB
ENCFF622ZJZ.fastq fastq (reads) 2.4 GB
ENCFF623AFL.bigWig bigWig (minus strand signal of all reads) 94.7 MB
ENCFF623AYA.bigWig bigWig (plus strand signal of unique reads) 102.0 MB
ENCFF627ABT.tsv tsv (gene quantifications) 9.5 MB
ENCFF686YBK.bigWig bigWig (plus strand signal of unique reads) 85.8 MB
ENCFF695SHY.bam bam (alignments) 3.4 GB
ENCFF708UWB.tsv tsv (differential expression quantifications) 2.0 MB
ENCFF746YKT.bam bam (alignments) 4.7 GB
ENCFF768AAG.bam bam (transcriptome alignments) 6.0 GB
ENCFF777UCV.tsv tsv (transcript quantifications) 29.8 MB
ENCFF783GUR.bigWig bigWig (minus strand signal of unique reads) 90.3 MB
ENCFF786DPR.bigWig bigWig (minus strand signal of all reads) 96.5 MB
ENCFF790OKK.bigWig bigWig (plus strand signal of all reads) 113.7 MB
ENCFF815KLH.bam bam (alignments) 3.7 GB
ENCFF827WJY.bigWig bigWig (plus strand signal of unique reads) 99.2 MB
ENCFF839YSZ.bigWig bigWig (plus strand signal of unique reads) 89.0 MB
ENCFF854IEO.bam bam (transcriptome alignments) 5.1 GB
ENCFF866JXR.bigWig bigWig (minus strand signal of unique reads) 99.5 MB
ENCFF887RVB.bigWig bigWig (minus strand signal of all reads) 112.4 MB
ENCFF894KDR.bigWig bigWig (plus strand signal of unique reads) 99.1 MB
ENCFF899DNM.tsv tsv (gene quantifications) 10.4 MB
ENCFF903WZT.bam bam (alignments) 5.5 GB
ENCFF905QOO.bam bam (alignments) 4.6 GB
ENCFF908OFV.tsv tsv (transcript quantifications) 25.3 MB
ENCFF920DFC.bigWig bigWig (minus strand signal of unique reads) 87.2 MB
ENCFF928QND.bigWig bigWig (minus strand signal of unique reads) 99.0 MB
ENCFF939SZY.bigWig bigWig (minus strand signal of unique reads) 98.5 MB
ENCFF953UIA.bam bam (alignments) 4.4 GB
ENCFF966XFB.bigWig bigWig (minus strand signal of unique reads) 83.6 MB
ENCFF974ENY.bigWig bigWig (minus strand signal of all reads) 110.8 MB
ENCFF977GFP.bigWig bigWig (minus strand signal of all reads) 113.1 MB
ENCFF978FQN.bigWig bigWig (minus strand signal of unique reads) 96.7 MB
ENCFF986YFP.bigWig bigWig (minus strand signal of all reads) 108.8 MB
ENCFF992BIT.bigWig bigWig (plus strand signal of all reads) 100.8 MB
ENCFF998UWZ.bigWig bigWig (minus strand signal of unique reads) 90.8 MB
ENCSR561CBC ENCSR · via encode_api

shRNA knockdown against KHSRP in K562 cells followed by RNA-seq. (KHSRP-LV11)

Homo sapiens

92 data files
FileTypeSize
ENCFF009IJD.bigWig bigWig (minus strand signal of unique reads) 89.6 MB
ENCFF030RYR.bam bam (transcriptome alignments) 4.9 GB
ENCFF041POQ.bigWig bigWig (minus strand signal of unique reads) 93.8 MB
ENCFF051QWW.bigWig bigWig (minus strand signal of all reads) 107.2 MB
ENCFF077CWW.bam bam (alignments) 4.5 GB
ENCFF078YPS.bam bam (alignments) 2.7 GB
ENCFF084CRR.bigWig bigWig (minus strand signal of unique reads) 80.6 MB
ENCFF089IQF.bigWig bigWig (minus strand signal of all reads) 98.6 MB
ENCFF090TEU.bigWig bigWig (minus strand signal of all reads) 83.5 MB
ENCFF109XNX.bigWig bigWig (minus strand signal of all reads) 107.8 MB
ENCFF136EGJ.bigWig bigWig (minus strand signal of all reads) 88.1 MB
ENCFF141GAF.bam bam (transcriptome alignments) 5.0 GB
ENCFF142HVO.bigWig bigWig (minus strand signal of all reads) 93.1 MB
ENCFF142YCG.bigWig bigWig (minus strand signal of unique reads) 82.3 MB
ENCFF146ENY.bam bam (transcriptome alignments) 3.9 GB
ENCFF150TBA.tsv tsv (differential expression quantifications) 5.4 MB
ENCFF153MZG.tar tar (differential splicing quantifications) 3.5 MB
ENCFF194MRE.bigWig bigWig (plus strand signal of all reads) 99.6 MB
ENCFF195ULN.tsv tsv (gene quantifications) 10.4 MB
ENCFF196FPG.bigWig bigWig (plus strand signal of all reads) 96.3 MB
ENCFF200OMP.bam bam (alignments) 2.7 GB
ENCFF220BNB.bigWig bigWig (plus strand signal of all reads) 108.3 MB
ENCFF223DOM.tsv tsv (differential expression quantifications) 2.8 MB
ENCFF225SBM.bam bam (alignments) 3.3 GB
ENCFF245TSB.bigWig bigWig (plus strand signal of all reads) 91.1 MB
ENCFF246IAF.tar tar (differential splicing quantifications) 15.6 MB
ENCFF255RCU.bigWig bigWig (plus strand signal of unique reads) 82.7 MB
ENCFF288GLU.bigWig bigWig (minus strand signal of unique reads) 88.4 MB
ENCFF307RKB.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF345PEC.bigWig bigWig (plus strand signal of unique reads) 82.6 MB
ENCFF346MKC.bigWig bigWig (minus strand signal of all reads) 87.3 MB
ENCFF357GTO.bigWig bigWig (plus strand signal of unique reads) 96.6 MB
ENCFF375JQN.fastq fastq (reads) 2.3 GB
ENCFF390OVK.bam bam (transcriptome alignments) 4.7 GB
ENCFF390ZVY.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF411DRY.bigWig bigWig (plus strand signal of all reads) 89.3 MB
ENCFF416AUB.bigWig bigWig (plus strand signal of all reads) 84.9 MB
ENCFF433MBU.bigWig bigWig (minus strand signal of unique reads) 88.7 MB
ENCFF436TLR.bigWig bigWig (minus strand signal of all reads) 89.6 MB
ENCFF439UJR.tsv tsv (gene quantifications) 9.5 MB
ENCFF441PBR.bam bam (alignments) 3.4 GB
ENCFF449OMT.tsv tsv (gene quantifications) 9.1 MB
ENCFF452LES.tsv tsv (transcript quantifications) 27.4 MB
ENCFF482TPW.bigWig bigWig (minus strand signal of all reads) 107.8 MB
ENCFF509TQS.tsv tsv (transcript quantifications) 24.9 MB
ENCFF521RUR.bam bam (alignments) 2.8 GB
ENCFF538CCW.tsv tsv (transcript quantifications) 24.9 MB
ENCFF546EHT.bam bam (transcriptome alignments) 5.9 GB
ENCFF577HDB.bigWig bigWig (minus strand signal of unique reads) 80.7 MB
ENCFF577TME.bigWig bigWig (plus strand signal of unique reads) 91.7 MB
ENCFF583QRW.tsv tsv (transcript quantifications) 29.8 MB
ENCFF604NUO.bigWig bigWig (plus strand signal of unique reads) 87.4 MB
ENCFF605RPQ.bigWig bigWig (minus strand signal of all reads) 101.3 MB
ENCFF607QXQ.tsv tsv (transcript quantifications) 25.3 MB
ENCFF621ZCX.bigWig bigWig (plus strand signal of unique reads) 87.7 MB
ENCFF627FPP.bam bam (transcriptome alignments) 4.0 GB
ENCFF639AIA.tsv tsv (gene quantifications) 10.4 MB
ENCFF645NUN.tar tar (differential splicing quantifications) 4.0 MB
ENCFF649ATW.bigWig bigWig (minus strand signal of all reads) 94.8 MB
ENCFF673JLT.tsv tsv (transcript quantifications) 27.4 MB
ENCFF675HDT.bam bam (alignments) 4.5 GB
ENCFF686YZB.bigWig bigWig (plus strand signal of all reads) 102.4 MB
ENCFF732IVH.bam bam (alignments) 3.7 GB
ENCFF735YAX.bigWig bigWig (plus strand signal of all reads) 102.1 MB
ENCFF747OXC.bam bam (alignments) 3.7 GB
ENCFF759PDN.tsv tsv (gene quantifications) 9.1 MB
ENCFF764WCU.bam bam (alignments) 3.2 GB
ENCFF795LDC.bam bam (alignments) 4.2 GB
ENCFF808JTF.bigWig bigWig (plus strand signal of unique reads) 97.2 MB
ENCFF817FVL.bigWig bigWig (minus strand signal of unique reads) 94.6 MB
ENCFF818GKG.tsv tsv (differential expression quantifications) 4.1 MB
ENCFF824PIA.fastq fastq (reads) 2.3 GB
ENCFF836BRY.fastq fastq (reads) 2.0 GB
ENCFF853ACY.bigWig bigWig (plus strand signal of unique reads) 96.0 MB
ENCFF867JMN.bigWig bigWig (minus strand signal of all reads) 101.1 MB
ENCFF868GAI.bigWig bigWig (minus strand signal of unique reads) 75.3 MB
ENCFF868OPM.bigWig bigWig (plus strand signal of all reads) 94.2 MB
ENCFF878PZU.bigWig bigWig (minus strand signal of unique reads) 85.6 MB
ENCFF883SCU.tsv tsv (gene quantifications) 9.4 MB
ENCFF891QKI.bigWig bigWig (plus strand signal of unique reads) 90.9 MB
ENCFF907ZKI.bam bam (alignments) 3.5 GB
ENCFF920CEJ.bigWig bigWig (plus strand signal of unique reads) 77.4 MB
ENCFF923XEM.fastq fastq (reads) 1.9 GB
ENCFF948EVG.bigWig bigWig (plus strand signal of all reads) 108.9 MB
ENCFF948MXW.bigWig bigWig (minus strand signal of unique reads) 95.1 MB
ENCFF948WQB.bigWig bigWig (plus strand signal of all reads) 108.9 MB
ENCFF953CDN.bigWig bigWig (plus strand signal of all reads) 88.3 MB
ENCFF959TXA.tsv tsv (transcript quantifications) 25.3 MB
ENCFF961MRX.bigWig bigWig (plus strand signal of unique reads) 84.5 MB
ENCFF966BIK.bigWig bigWig (minus strand signal of unique reads) 85.6 MB
ENCFF989TTR.bigWig bigWig (plus strand signal of unique reads) 90.4 MB
ENCFF993UNK.tsv tsv (transcript quantifications) 29.8 MB
ENCSR906RHU ENCSR · via encode_api

shRNA knockdown against SRSF5 in K562 cells followed by RNA-seq. (SRSF5-41-LV11)

Homo sapiens

92 data files
FileTypeSize
ENCFF012PJV.bigWig bigWig (minus strand signal of unique reads) 79.5 MB
ENCFF019MPW.bigWig bigWig (minus strand signal of unique reads) 84.7 MB
ENCFF020QCO.bigWig bigWig (plus strand signal of unique reads) 75.0 MB
ENCFF024FMR.tsv tsv (differential expression quantifications) 5.4 MB
ENCFF030TOO.fastq fastq (reads) 1.7 GB
ENCFF048VRF.tsv tsv (gene quantifications) 9.4 MB
ENCFF069DLL.bigWig bigWig (minus strand signal of all reads) 90.7 MB
ENCFF070NLG.bigWig bigWig (plus strand signal of unique reads) 78.3 MB
ENCFF085TMN.bigWig bigWig (plus strand signal of unique reads) 74.5 MB
ENCFF108ICE.bigWig bigWig (plus strand signal of all reads) 80.3 MB
ENCFF109QFQ.bam bam (transcriptome alignments) 4.4 GB
ENCFF121YTU.bigWig bigWig (plus strand signal of all reads) 98.5 MB
ENCFF139FNB.bam bam (transcriptome alignments) 3.7 GB
ENCFF142DJX.bam bam (alignments) 2.7 GB
ENCFF143UBA.bigWig bigWig (plus strand signal of unique reads) 79.1 MB
ENCFF158CIE.tsv tsv (transcript quantifications) 25.3 MB
ENCFF177YTY.bigWig bigWig (plus strand signal of all reads) 78.8 MB
ENCFF191VDV.tsv tsv (gene quantifications) 9.1 MB
ENCFF197PXF.bam bam (alignments) 2.7 GB
ENCFF198FDG.bam bam (alignments) 3.3 GB
ENCFF198UIL.bigWig bigWig (plus strand signal of unique reads) 69.7 MB
ENCFF201GHP.bigWig bigWig (minus strand signal of unique reads) 77.0 MB
ENCFF214OWE.bigWig bigWig (minus strand signal of unique reads) 72.5 MB
ENCFF225ITZ.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF245KUW.tsv tsv (transcript quantifications) 24.9 MB
ENCFF249KOG.tsv tsv (gene quantifications) 9.1 MB
ENCFF264GII.bam bam (alignments) 3.7 GB
ENCFF272EYM.bigWig bigWig (plus strand signal of unique reads) 81.7 MB
ENCFF287ZBH.bam bam (alignments) 2.4 GB
ENCFF294PGA.tsv tsv (transcript quantifications) 25.3 MB
ENCFF303JYO.fastq fastq (reads) 1.9 GB
ENCFF313XPZ.bigWig bigWig (minus strand signal of all reads) 74.4 MB
ENCFF325RPR.bigWig bigWig (minus strand signal of all reads) 82.7 MB
ENCFF333NND.bigWig bigWig (minus strand signal of all reads) 84.1 MB
ENCFF334AUO.bigWig bigWig (plus strand signal of all reads) 76.0 MB
ENCFF336CAK.bigWig bigWig (plus strand signal of unique reads) 81.6 MB
ENCFF349CWT.bigWig bigWig (plus strand signal of all reads) 92.0 MB
ENCFF378NFJ.bam bam (transcriptome alignments) 4.2 GB
ENCFF382BOK.bigWig bigWig (plus strand signal of all reads) 96.6 MB
ENCFF384AFR.bigWig bigWig (plus strand signal of all reads) 80.9 MB
ENCFF410ERY.bigWig bigWig (minus strand signal of all reads) 97.3 MB
ENCFF414HZP.tsv tsv (transcript quantifications) 24.9 MB
ENCFF427EZF.bigWig bigWig (minus strand signal of unique reads) 76.5 MB
ENCFF433WAZ.bigWig bigWig (minus strand signal of unique reads) 79.7 MB
ENCFF438OFR.bam bam (transcriptome alignments) 3.7 GB
ENCFF470CYA.bigWig bigWig (minus strand signal of all reads) 78.8 MB
ENCFF498OQU.tar tar (differential splicing quantifications) 3.3 MB
ENCFF508WOT.bigWig bigWig (minus strand signal of unique reads) 72.4 MB
ENCFF515GHM.bam bam (alignments) 3.2 GB
ENCFF515TED.bigWig bigWig (minus strand signal of unique reads) 72.9 MB
ENCFF548KOV.bigWig bigWig (minus strand signal of all reads) 90.7 MB
ENCFF563CTC.bigWig bigWig (plus strand signal of unique reads) 81.7 MB
ENCFF564VZB.tsv tsv (gene quantifications) 9.5 MB
ENCFF565YWK.bigWig bigWig (minus strand signal of unique reads) 79.7 MB
ENCFF568KAD.bam bam (alignments) 3.7 GB
ENCFF576HBC.bam bam (transcriptome alignments) 5.0 GB
ENCFF583VTY.tar tar (differential splicing quantifications) 3.8 MB
ENCFF585QQZ.fastq fastq (reads) 1.8 GB
ENCFF609ODX.bigWig bigWig (minus strand signal of all reads) 77.6 MB
ENCFF610FFK.bigWig bigWig (plus strand signal of all reads) 98.5 MB
ENCFF611OLW.tsv tsv (gene quantifications) 10.4 MB
ENCFF612NBX.bigWig bigWig (minus strand signal of all reads) 79.3 MB
ENCFF629DTX.bigWig bigWig (plus strand signal of all reads) 90.7 MB
ENCFF657IWS.bigWig bigWig (plus strand signal of unique reads) 85.8 MB
ENCFF660HSA.bam bam (alignments) 2.4 GB
ENCFF670AMZ.tar tar (differential splicing quantifications) 15.5 MB
ENCFF672IFO.tsv tsv (transcript quantifications) 29.8 MB
ENCFF676EOG.fastq fastq (reads) 2.0 GB
ENCFF700JDF.tsv tsv (gene quantifications) 10.4 MB
ENCFF713QKE.bigWig bigWig (minus strand signal of unique reads) 67.8 MB
ENCFF757XYQ.bigWig bigWig (minus strand signal of all reads) 95.3 MB
ENCFF763XFL.tsv tsv (transcript quantifications) 27.3 MB
ENCFF811BZD.bam bam (alignments) 2.5 GB
ENCFF829RUW.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF835ZUT.bam bam (alignments) 3.5 GB
ENCFF836DYZ.bam bam (transcriptome alignments) 4.2 GB
ENCFF855YWZ.tsv tsv (transcript quantifications) 27.4 MB
ENCFF861HYJ.bam bam (alignments) 3.3 GB
ENCFF873FTE.bigWig bigWig (minus strand signal of all reads) 97.3 MB
ENCFF883DJW.tsv tsv (differential expression quantifications) 4.3 MB
ENCFF886MVC.bigWig bigWig (plus strand signal of unique reads) 86.8 MB
ENCFF886WWS.bigWig bigWig (plus strand signal of all reads) 85.6 MB
ENCFF890NVS.bam bam (alignments) 2.8 GB
ENCFF913KHT.bigWig bigWig (plus strand signal of unique reads) 74.3 MB
ENCFF925WMT.bigWig bigWig (plus strand signal of all reads) 92.0 MB
ENCFF933QZV.bigWig bigWig (minus strand signal of all reads) 89.5 MB
ENCFF944ELX.bigWig bigWig (minus strand signal of unique reads) 83.8 MB
ENCFF952NKR.bigWig bigWig (plus strand signal of all reads) 83.8 MB
ENCFF957CRW.bigWig bigWig (minus strand signal of unique reads) 83.9 MB
ENCFF958AYZ.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF963JJA.tsv tsv (transcript quantifications) 29.8 MB
ENCFF973NIF.bigWig bigWig (plus strand signal of unique reads) 86.2 MB
ENCSR774BXV ENCSR · via encode_api

shRNA knockdown against EIF4B in K562 cells followed by RNA-seq. (EIF4B-LV08)

Homo sapiens

92 data files
FileTypeSize
ENCFF003NTV.bigWig bigWig (minus strand signal of unique reads) 74.2 MB
ENCFF009LOL.bigWig bigWig (plus strand signal of unique reads) 66.3 MB
ENCFF011ZAJ.tsv tsv (differential expression quantifications) 5.4 MB
ENCFF016XFF.bigWig bigWig (plus strand signal of all reads) 91.7 MB
ENCFF026RKJ.bigWig bigWig (minus strand signal of all reads) 89.1 MB
ENCFF074AFJ.bigWig bigWig (minus strand signal of unique reads) 64.8 MB
ENCFF085NLH.bigWig bigWig (minus strand signal of unique reads) 69.9 MB
ENCFF124UFQ.bigWig bigWig (plus strand signal of all reads) 70.2 MB
ENCFF151WLM.bigWig bigWig (plus strand signal of unique reads) 80.4 MB
ENCFF153MLU.bigWig bigWig (plus strand signal of unique reads) 71.2 MB
ENCFF162DYM.bigWig bigWig (plus strand signal of all reads) 82.6 MB
ENCFF199RRP.bigWig bigWig (minus strand signal of all reads) 79.2 MB
ENCFF274XAB.bam bam (transcriptome alignments) 4.0 GB
ENCFF288AGM.tsv tsv (transcript quantifications) 24.9 MB
ENCFF301JKV.bigWig bigWig (minus strand signal of unique reads) 69.2 MB
ENCFF309NOK.bigWig bigWig (minus strand signal of unique reads) 79.2 MB
ENCFF314GWG.bigWig bigWig (plus strand signal of all reads) 68.1 MB
ENCFF322IFK.tsv tsv (differential expression quantifications) 4.2 MB
ENCFF327ATH.tsv tsv (gene quantifications) 9.4 MB
ENCFF328FJP.bigWig bigWig (plus strand signal of all reads) 91.7 MB
ENCFF341VPZ.bigWig bigWig (minus strand signal of all reads) 69.2 MB
ENCFF342DGH.tsv tsv (transcript quantifications) 24.9 MB
ENCFF355YYX.bigWig bigWig (plus strand signal of all reads) 72.5 MB
ENCFF366CHX.bigWig bigWig (plus strand signal of all reads) 80.3 MB
ENCFF374YSP.tsv tsv (gene quantifications) 10.4 MB
ENCFF375KYM.bigWig bigWig (plus strand signal of all reads) 80.3 MB
ENCFF378KFP.bam bam (alignments) 3.6 GB
ENCFF385ZKI.bigWig bigWig (plus strand signal of all reads) 79.1 MB
ENCFF401LCO.bigWig bigWig (minus strand signal of unique reads) 65.1 MB
ENCFF402SEW.tar tar (differential splicing quantifications) 3.8 MB
ENCFF406LQA.tsv tsv (transcript quantifications) 27.4 MB
ENCFF415SKI.tsv tsv (differential expression quantifications) 1.6 MB
ENCFF439RFC.fastq fastq (reads) 1.9 GB
ENCFF439ZLC.bigWig bigWig (minus strand signal of all reads) 79.2 MB
ENCFF488TXZ.bigWig bigWig (minus strand signal of all reads) 66.9 MB
ENCFF501PFJ.bigWig bigWig (plus strand signal of unique reads) 70.9 MB
ENCFF510PMH.tsv tsv (transcript quantifications) 25.3 MB
ENCFF515CRB.bigWig bigWig (minus strand signal of all reads) 79.2 MB
ENCFF520FWP.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF535RRS.bigWig bigWig (plus strand signal of all reads) 76.0 MB
ENCFF538ZCN.bam bam (alignments) 3.5 GB
ENCFF540OGR.fastq fastq (reads) 2.2 GB
ENCFF542VBT.bigWig bigWig (minus strand signal of all reads) 78.0 MB
ENCFF547RDG.bam bam (transcriptome alignments) 4.0 GB
ENCFF559CFV.bigWig bigWig (plus strand signal of unique reads) 76.4 MB
ENCFF562JDU.bam bam (transcriptome alignments) 4.5 GB
ENCFF581SIY.tsv tsv (transcript quantifications) 29.8 MB
ENCFF591AZT.bigWig bigWig (plus strand signal of unique reads) 62.6 MB
ENCFF597JNG.bigWig bigWig (plus strand signal of unique reads) 71.3 MB
ENCFF605NXY.bigWig bigWig (minus strand signal of all reads) 90.3 MB
ENCFF610HPU.bam bam (alignments) 3.9 GB
ENCFF631XFW.tsv tsv (gene quantifications) 10.4 MB
ENCFF645KLM.bigWig bigWig (plus strand signal of unique reads) 74.8 MB
ENCFF652KCO.bam bam (transcriptome alignments) 4.9 GB
ENCFF658LVY.bam bam (alignments) 3.1 GB
ENCFF667IZY.tsv tsv (gene quantifications) 9.4 MB
ENCFF678MML.tsv tsv (gene quantifications) 9.1 MB
ENCFF683MOW.tsv tsv (transcript quantifications) 29.8 MB
ENCFF686TVY.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF705MRC.bigWig bigWig (minus strand signal of all reads) 90.4 MB
ENCFF717HXD.bigWig bigWig (minus strand signal of all reads) 71.2 MB
ENCFF719WNY.bigWig bigWig (minus strand signal of unique reads) 78.3 MB
ENCFF725XGI.bam bam (alignments) 3.4 GB
ENCFF726IST.bigWig bigWig (plus strand signal of unique reads) 71.8 MB
ENCFF745IWF.fastq fastq (reads) 2.1 GB
ENCFF748JQF.bam bam (alignments) 3.2 GB
ENCFF755HXF.bigWig bigWig (minus strand signal of unique reads) 79.4 MB
ENCFF763RCR.bigWig bigWig (minus strand signal of unique reads) 72.9 MB
ENCFF769NGC.bigWig bigWig (plus strand signal of unique reads) 81.5 MB
ENCFF771TFG.tsv tsv (transcript quantifications) 25.3 MB
ENCFF780WMJ.bam bam (alignments) 4.0 GB
ENCFF787WRI.bam bam (alignments) 3.1 GB
ENCFF824FES.fastq fastq (reads) 2.0 GB
ENCFF825ZEB.bam bam (alignments) 4.2 GB
ENCFF839CXF.bigWig bigWig (plus strand signal of unique reads) 67.0 MB
ENCFF839KZC.bigWig bigWig (minus strand signal of all reads) 81.0 MB
ENCFF851BXN.bigWig bigWig (minus strand signal of unique reads) 60.8 MB
ENCFF860HXU.bam bam (alignments) 3.9 GB
ENCFF886GHG.bigWig bigWig (plus strand signal of all reads) 90.4 MB
ENCFF901CQT.tsv tsv (transcript quantifications) 27.3 MB
ENCFF905HGN.bam bam (transcriptome alignments) 4.4 GB
ENCFF906ZEX.tsv tsv (gene quantifications) 9.1 MB
ENCFF912GVV.bigWig bigWig (plus strand signal of unique reads) 81.6 MB
ENCFF919OES.bigWig bigWig (minus strand signal of unique reads) 68.9 MB
ENCFF951AHN.tar tar (differential splicing quantifications) 15.6 MB
ENCFF959IWI.tar tar (differential splicing quantifications) 3.3 MB
ENCFF959LYF.bam bam (alignments) 3.4 GB
ENCFF970IXR.bigWig bigWig (plus strand signal of all reads) 80.5 MB
ENCFF971DMX.bam bam (alignments) 4.2 GB
ENCFF973EJZ.bigWig bigWig (minus strand signal of unique reads) 69.5 MB
ENCFF975NNT.bigWig bigWig (minus strand signal of all reads) 74.5 MB
ENCFF982SBQ.bam bam (transcriptome alignments) 4.4 GB
ENCSR845RKH ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) mock pulldown control experiment of IGF2BP2

1 data file
FileTypeSize
ENCFF032AUY.fastq fastq (reads) 705.5 MB
ENCSR175OMA ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) pulldown experiment against hnRNPD

11 data files
FileTypeSize
ENCFF002DEG.tsv tsv (enrichment) 60.0 KB
ENCFF002DEH.tsv tsv (enrichment) 244.0 KB
ENCFF002DEI.tsv tsv (enrichment) 992.0 KB
ENCFF002DEJ.tsv tsv (library fraction) 76.4 KB
ENCFF002DEK.tsv tsv (library fraction) 312.3 KB
ENCFF002DEL.tsv tsv (library fraction) 1.2 MB
ENCFF002DFU.fastq fastq (reads) 518.8 MB
ENCFF002DFV.fastq fastq (reads) 580.6 MB
ENCFF002DFW.fastq fastq (reads) 639.3 MB
ENCFF002DFX.fastq fastq (reads) 644.8 MB
ENCFF002DFY.fastq fastq (reads) 548.0 MB
ENCSR995ZGJ ENCSR · via encode_api

shRNA knockdown against SMNDC1 in HepG2 cells followed by RNA-seq. (SMNDC1 BGHLV14)

Homo sapiens

92 data files
FileTypeSize
ENCFF018JLL.bigWig bigWig (minus strand signal of unique reads) 69.1 MB
ENCFF029MYC.bigWig bigWig (minus strand signal of all reads) 71.0 MB
ENCFF057PYY.bigWig bigWig (plus strand signal of all reads) 75.5 MB
ENCFF064OMI.bigWig bigWig (minus strand signal of unique reads) 68.7 MB
ENCFF077RTE.bigWig bigWig (minus strand signal of all reads) 77.1 MB
ENCFF086JDZ.bigWig bigWig (plus strand signal of unique reads) 67.8 MB
ENCFF092YET.tar tar (differential splicing quantifications) 3.8 MB
ENCFF096HDS.bam bam (transcriptome alignments) 5.3 GB
ENCFF099AZH.bigWig bigWig (plus strand signal of all reads) 78.1 MB
ENCFF107KKK.tsv tsv (gene quantifications) 9.4 MB
ENCFF115YVH.bigWig bigWig (plus strand signal of all reads) 69.0 MB
ENCFF129ZQX.bigWig bigWig (plus strand signal of unique reads) 67.4 MB
ENCFF152BUG.bigWig bigWig (minus strand signal of unique reads) 66.1 MB
ENCFF174RAZ.bigWig bigWig (plus strand signal of unique reads) 73.8 MB
ENCFF179POI.bam bam (alignments) 4.1 GB
ENCFF195PBC.bam bam (alignments) 3.4 GB
ENCFF196NMR.fastq fastq (reads) 2.4 GB
ENCFF198PWN.bigWig bigWig (plus strand signal of unique reads) 71.3 MB
ENCFF202JTP.bam bam (alignments) 3.4 GB
ENCFF208QOX.bigWig bigWig (plus strand signal of all reads) 78.1 MB
ENCFF209GOF.bigWig bigWig (minus strand signal of all reads) 79.4 MB
ENCFF227ULF.bigWig bigWig (plus strand signal of unique reads) 70.7 MB
ENCFF248WUB.bigWig bigWig (minus strand signal of unique reads) 65.1 MB
ENCFF253QAQ.fastq fastq (reads) 2.2 GB
ENCFF254LNR.tsv tsv (transcript quantifications) 27.3 MB
ENCFF256ZLL.bigWig bigWig (plus strand signal of all reads) 71.9 MB
ENCFF257GHQ.bigWig bigWig (plus strand signal of all reads) 72.8 MB
ENCFF268WYU.bigWig bigWig (minus strand signal of all reads) 77.1 MB
ENCFF272QWU.fastq fastq (reads) 2.3 GB
ENCFF273CIP.bigWig bigWig (plus strand signal of unique reads) 72.7 MB
ENCFF289MEE.bigWig bigWig (minus strand signal of unique reads) 69.9 MB
ENCFF299NUG.tsv tsv (gene quantifications) 10.4 MB
ENCFF304MDM.tar tar (differential splicing quantifications) 15.6 MB
ENCFF341QFK.tsv tsv (gene quantifications) 9.4 MB
ENCFF355JHL.bam bam (alignments) 4.0 GB
ENCFF356QPR.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF360CYQ.bam bam (alignments) 3.5 GB
ENCFF367KPV.bigWig bigWig (minus strand signal of unique reads) 71.2 MB
ENCFF406ZRX.bigWig bigWig (minus strand signal of unique reads) 72.2 MB
ENCFF423PHU.bigWig bigWig (plus strand signal of all reads) 71.6 MB
ENCFF442JOW.bigWig bigWig (plus strand signal of unique reads) 70.9 MB
ENCFF449ZDL.bigWig bigWig (minus strand signal of unique reads) 68.4 MB
ENCFF455QQB.bam bam (alignments) 3.4 GB
ENCFF488CFL.tar tar (differential splicing quantifications) 3.2 MB
ENCFF496HMQ.bigWig bigWig (minus strand signal of unique reads) 64.2 MB
ENCFF508JGP.bigWig bigWig (plus strand signal of all reads) 80.4 MB
ENCFF508QFI.tsv tsv (transcript quantifications) 29.8 MB
ENCFF518NBX.tsv tsv (transcript quantifications) 29.8 MB
ENCFF521NVY.tsv tsv (transcript quantifications) 25.3 MB
ENCFF539RNI.bigWig bigWig (plus strand signal of all reads) 80.7 MB
ENCFF556DWO.bigWig bigWig (plus strand signal of unique reads) 70.0 MB
ENCFF577EDP.bam bam (transcriptome alignments) 6.1 GB
ENCFF589NFR.bigWig bigWig (plus strand signal of unique reads) 65.8 MB
ENCFF612FSV.tsv tsv (differential expression quantifications) 4.3 MB
ENCFF615DEI.tsv tsv (transcript quantifications) 27.3 MB
ENCFF619VPC.tsv tsv (gene quantifications) 9.1 MB
ENCFF627EKJ.bigWig bigWig (minus strand signal of all reads) 72.5 MB
ENCFF636HBE.tsv tsv (transcript quantifications) 25.3 MB
ENCFF677PVP.bigWig bigWig (minus strand signal of all reads) 70.4 MB
ENCFF678DUM.bigWig bigWig (minus strand signal of unique reads) 69.4 MB
ENCFF690XSY.bigWig bigWig (minus strand signal of all reads) 79.6 MB
ENCFF726OXN.fastq fastq (reads) 2.3 GB
ENCFF727OID.bam bam (transcriptome alignments) 5.2 GB
ENCFF750VIZ.bigWig bigWig (minus strand signal of all reads) 76.5 MB
ENCFF751MNR.tsv tsv (differential expression quantifications) 3.0 MB
ENCFF776KBW.tsv tsv (transcript quantifications) 24.9 MB
ENCFF781HNS.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF799YPD.bam bam (alignments) 4.3 GB
ENCFF806KQE.bigWig bigWig (plus strand signal of all reads) 77.4 MB
ENCFF809DRH.bigWig bigWig (minus strand signal of all reads) 67.8 MB
ENCFF818WSI.bam bam (alignments) 4.1 GB
ENCFF829HUU.bam bam (alignments) 4.1 GB
ENCFF839VCB.bam bam (transcriptome alignments) 5.4 GB
ENCFF847IFY.bigWig bigWig (minus strand signal of all reads) 79.6 MB
ENCFF848LQZ.bam bam (alignments) 3.5 GB
ENCFF867JRE.bigWig bigWig (plus strand signal of unique reads) 72.9 MB
ENCFF871OFE.bigWig bigWig (plus strand signal of unique reads) 66.8 MB
ENCFF875BHT.bam bam (transcriptome alignments) 5.9 GB
ENCFF888CQO.tsv tsv (gene quantifications) 10.4 MB
ENCFF898WEG.bigWig bigWig (plus strand signal of all reads) 73.4 MB
ENCFF901YPQ.bam bam (alignments) 4.3 GB
ENCFF905DPA.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF915PJW.bigWig bigWig (minus strand signal of unique reads) 66.3 MB
ENCFF933MOH.bigWig bigWig (minus strand signal of all reads) 71.7 MB
ENCFF935YHU.bigWig bigWig (minus strand signal of unique reads) 71.4 MB
ENCFF947PWX.bigWig bigWig (plus strand signal of unique reads) 70.1 MB
ENCFF958AHZ.bam bam (transcriptome alignments) 5.4 GB
ENCFF983RLC.bigWig bigWig (plus strand signal of all reads) 80.7 MB
ENCFF986QUR.tsv tsv (transcript quantifications) 24.9 MB
ENCFF993URQ.bam bam (alignments) 3.6 GB
ENCFF995OKK.bigWig bigWig (minus strand signal of all reads) 74.4 MB
ENCFF999KPP.tsv tsv (gene quantifications) 9.1 MB
ENCSR256PLH ENCSR · via encode_api

shRNA knockdown against QKI in K562 cells followed by RNA-seq. (QKI-LV08)

Homo sapiens

92 data files
FileTypeSize
ENCFF021LKL.bam bam (alignments) 3.7 GB
ENCFF025OJI.tsv tsv (transcript quantifications) 25.3 MB
ENCFF036RII.bigWig bigWig (plus strand signal of unique reads) 81.7 MB
ENCFF051MKR.bigWig bigWig (plus strand signal of all reads) 82.6 MB
ENCFF057BER.bam bam (alignments) 4.5 GB
ENCFF071OKL.bigWig bigWig (minus strand signal of unique reads) 84.1 MB
ENCFF077AQK.bigWig bigWig (plus strand signal of unique reads) 73.7 MB
ENCFF087NJG.bigWig bigWig (plus strand signal of unique reads) 81.1 MB
ENCFF090LXC.bigWig bigWig (plus strand signal of all reads) 82.8 MB
ENCFF096LJD.tar tar (differential splicing quantifications) 3.6 MB
ENCFF124CQK.bam bam (alignments) 4.5 GB
ENCFF130VSR.bigWig bigWig (minus strand signal of unique reads) 81.3 MB
ENCFF143RGZ.tsv tsv (differential expression quantifications) 5.3 MB
ENCFF152TVI.bigWig bigWig (minus strand signal of unique reads) 79.0 MB
ENCFF161LVK.bigWig bigWig (plus strand signal of all reads) 92.7 MB
ENCFF180CRF.bigWig bigWig (plus strand signal of all reads) 83.6 MB
ENCFF216XIZ.bam bam (transcriptome alignments) 4.9 GB
ENCFF226JJS.bam bam (alignments) 4.3 GB
ENCFF241URD.bigWig bigWig (plus strand signal of unique reads) 87.1 MB
ENCFF249PSB.tar tar (differential splicing quantifications) 3.2 MB
ENCFF251PSU.tsv tsv (transcript quantifications) 24.9 MB
ENCFF280ZIB.bam bam (alignments) 3.8 GB
ENCFF290KUU.tar tar (differential splicing quantifications) 14.4 MB
ENCFF296ETK.bigWig bigWig (minus strand signal of all reads) 91.4 MB
ENCFF296LNR.tsv tsv (gene quantifications) 9.5 MB
ENCFF329EXH.tsv tsv (gene quantifications) 9.1 MB
ENCFF357KOI.tsv tsv (gene quantifications) 9.5 MB
ENCFF357MWX.bam bam (alignments) 3.7 GB
ENCFF367LWL.bam bam (transcriptome alignments) 4.9 GB
ENCFF369MZL.bigWig bigWig (minus strand signal of unique reads) 74.8 MB
ENCFF377ZTK.bam bam (alignments) 4.6 GB
ENCFF380MMN.tsv tsv (transcript quantifications) 29.8 MB
ENCFF398TER.tsv tsv (transcript quantifications) 27.3 MB
ENCFF421AOX.tsv tsv (gene quantifications) 10.4 MB
ENCFF429ORL.bigWig bigWig (minus strand signal of unique reads) 84.8 MB
ENCFF446CNK.bigWig bigWig (minus strand signal of unique reads) 75.6 MB
ENCFF446WSX.bigWig bigWig (minus strand signal of unique reads) 71.6 MB
ENCFF447QFM.bam bam (transcriptome alignments) 5.6 GB
ENCFF448LBJ.tsv tsv (transcript quantifications) 25.3 MB
ENCFF453ZXG.bigWig bigWig (minus strand signal of unique reads) 79.3 MB
ENCFF454BPX.bigWig bigWig (plus strand signal of all reads) 97.9 MB
ENCFF454XSW.bigWig bigWig (plus strand signal of unique reads) 83.4 MB
ENCFF471HKG.bigWig bigWig (minus strand signal of unique reads) 81.3 MB
ENCFF472HWV.bigWig bigWig (minus strand signal of all reads) 81.0 MB
ENCFF480DCK.tsv tsv (gene quantifications) 9.1 MB
ENCFF487KSL.bigWig bigWig (minus strand signal of all reads) 94.8 MB
ENCFF497FKM.bigWig bigWig (plus strand signal of unique reads) 87.6 MB
ENCFF508ZAN.tsv tsv (differential expression quantifications) 2.6 MB
ENCFF532GDY.bigWig bigWig (minus strand signal of all reads) 86.4 MB
ENCFF550AZY.bam bam (transcriptome alignments) 5.5 GB
ENCFF557AJB.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF572KCM.bigWig bigWig (plus strand signal of all reads) 88.3 MB
ENCFF586JKW.bam bam (transcriptome alignments) 4.8 GB
ENCFF609RJA.bigWig bigWig (plus strand signal of unique reads) 76.7 MB
ENCFF628DER.bigWig bigWig (minus strand signal of unique reads) 74.5 MB
ENCFF647MBX.bigWig bigWig (minus strand signal of unique reads) 85.3 MB
ENCFF647UGQ.bigWig bigWig (plus strand signal of unique reads) 83.3 MB
ENCFF655DDI.tsv tsv (transcript quantifications) 29.8 MB
ENCFF659TAJ.bigWig bigWig (minus strand signal of all reads) 96.4 MB
ENCFF693XSD.bigWig bigWig (plus strand signal of unique reads) 86.6 MB
ENCFF703YXD.bam bam (alignments) 3.8 GB
ENCFF704NMX.bigWig bigWig (plus strand signal of all reads) 97.9 MB
ENCFF708KBX.bam bam (alignments) 3.7 GB
ENCFF740LCC.bigWig bigWig (plus strand signal of all reads) 92.7 MB
ENCFF751YDO.bigWig bigWig (minus strand signal of all reads) 81.9 MB
ENCFF757WVM.bam bam (alignments) 3.8 GB
ENCFF775SIP.tsv tsv (transcript quantifications) 24.9 MB
ENCFF782SZW.bigWig bigWig (minus strand signal of unique reads) 80.6 MB
ENCFF789ILZ.fastq fastq (reads) 2.5 GB
ENCFF792JDX.bigWig bigWig (minus strand signal of all reads) 85.4 MB
ENCFF801KJJ.bigWig bigWig (plus strand signal of all reads) 79.2 MB
ENCFF805XXK.bam bam (alignments) 4.6 GB
ENCFF828FHF.fastq fastq (reads) 2.4 GB
ENCFF834IQO.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF842XLV.tsv tsv (transcript quantifications) 27.3 MB
ENCFF844MVA.tsv tsv (gene quantifications) 10.4 MB
ENCFF870AIO.bigWig bigWig (plus strand signal of unique reads) 82.9 MB
ENCFF870YVZ.fastq fastq (reads) 2.4 GB
ENCFF884ETP.bigWig bigWig (minus strand signal of all reads) 96.4 MB
ENCFF884KRJ.bigWig bigWig (plus strand signal of unique reads) 76.9 MB
ENCFF890RNB.bigWig bigWig (plus strand signal of all reads) 92.0 MB
ENCFF897XWY.bam bam (alignments) 4.5 GB
ENCFF917GUD.bigWig bigWig (plus strand signal of all reads) 96.3 MB
ENCFF930PFK.bigWig bigWig (minus strand signal of all reads) 81.4 MB
ENCFF941VFD.bam bam (transcriptome alignments) 4.9 GB
ENCFF948ZHM.tsv tsv (differential expression quantifications) 4.1 MB
ENCFF952VWN.bigWig bigWig (minus strand signal of all reads) 90.7 MB
ENCFF953AIH.bigWig bigWig (plus strand signal of unique reads) 77.8 MB
ENCFF959QNR.bigWig bigWig (plus strand signal of all reads) 86.8 MB
ENCFF965ZJK.bigWig bigWig (minus strand signal of all reads) 77.6 MB
ENCFF977OJL.bigWig bigWig (minus strand signal of all reads) 91.4 MB
ENCFF998DSY.fastq fastq (reads) 2.4 GB
ENCSR783YSQ ENCSR · via encode_api

shRNA knockdown against RTF1 in K562 cells followed by RNA-seq. (RTF1 BGKLV13)

Homo sapiens

92 data files
FileTypeSize
ENCFF017FNW.bam bam (transcriptome alignments) 5.8 GB
ENCFF028JMR.bigWig bigWig (minus strand signal of unique reads) 81.0 MB
ENCFF034LSS.bigWig bigWig (minus strand signal of all reads) 88.6 MB
ENCFF044SXE.tsv tsv (gene quantifications) 9.4 MB
ENCFF049JBB.bam bam (alignments) 4.5 GB
ENCFF050LNW.tsv tsv (transcript quantifications) 24.9 MB
ENCFF072SYZ.bigWig bigWig (plus strand signal of unique reads) 83.3 MB
ENCFF073KES.bigWig bigWig (minus strand signal of all reads) 88.0 MB
ENCFF089XXI.bigWig bigWig (plus strand signal of unique reads) 80.8 MB
ENCFF106IAV.tar tar (differential splicing quantifications) 3.7 MB
ENCFF122NHE.bigWig bigWig (plus strand signal of all reads) 92.7 MB
ENCFF129QBI.tsv tsv (transcript quantifications) 24.9 MB
ENCFF131UTM.tar tar (differential splicing quantifications) 15.3 MB
ENCFF164KUZ.fastq fastq (reads) 2.4 GB
ENCFF170PWO.bigWig bigWig (minus strand signal of all reads) 76.3 MB
ENCFF170UUK.bigWig bigWig (plus strand signal of unique reads) 76.2 MB
ENCFF177DGZ.bigWig bigWig (plus strand signal of all reads) 82.1 MB
ENCFF182JJT.bigWig bigWig (minus strand signal of unique reads) 78.7 MB
ENCFF186AAM.fastq fastq (reads) 2.5 GB
ENCFF207CEP.bigWig bigWig (minus strand signal of all reads) 77.4 MB
ENCFF208TBN.bam bam (alignments) 5.0 GB
ENCFF215IBE.tar tar (differential splicing quantifications) 4.3 MB
ENCFF216PUZ.tsv tsv (differential expression quantifications) 2.8 MB
ENCFF227BQG.bigWig bigWig (plus strand signal of unique reads) 83.4 MB
ENCFF234ZXQ.bigWig bigWig (minus strand signal of unique reads) 75.8 MB
ENCFF247WOZ.bam bam (transcriptome alignments) 5.9 GB
ENCFF264PEV.bigWig bigWig (minus strand signal of unique reads) 74.5 MB
ENCFF266OPT.tsv tsv (transcript quantifications) 25.3 MB
ENCFF268SDJ.bam bam (alignments) 4.7 GB
ENCFF270FNH.bigWig bigWig (minus strand signal of all reads) 82.7 MB
ENCFF273HUU.bam bam (transcriptome alignments) 5.3 GB
ENCFF283QIY.bam bam (alignments) 3.8 GB
ENCFF287CUD.tsv tsv (transcript quantifications) 25.3 MB
ENCFF299KYY.bigWig bigWig (plus strand signal of unique reads) 80.6 MB
ENCFF304CII.bam bam (alignments) 4.1 GB
ENCFF314FWK.bigWig bigWig (plus strand signal of all reads) 89.9 MB
ENCFF315CXK.bigWig bigWig (plus strand signal of all reads) 89.8 MB
ENCFF362XDU.bigWig bigWig (minus strand signal of unique reads) 81.3 MB
ENCFF416EHQ.bigWig bigWig (plus strand signal of all reads) 78.7 MB
ENCFF416MVA.bam bam (alignments) 3.8 GB
ENCFF418SEB.bigWig bigWig (minus strand signal of all reads) 90.6 MB
ENCFF421FRQ.bigWig bigWig (plus strand signal of unique reads) 81.7 MB
ENCFF432AZJ.bigWig bigWig (minus strand signal of unique reads) 81.5 MB
ENCFF468WSM.bigWig bigWig (plus strand signal of all reads) 77.7 MB
ENCFF476PGN.fastq fastq (reads) 2.4 GB
ENCFF500FYZ.bigWig bigWig (plus strand signal of all reads) 83.6 MB
ENCFF508XXN.tsv tsv (transcript quantifications) 29.8 MB
ENCFF522TIT.bigWig bigWig (plus strand signal of unique reads) 74.2 MB
ENCFF538SMS.bam bam (alignments) 5.0 GB
ENCFF548AVB.tsv tsv (gene quantifications) 10.4 MB
ENCFF550RCN.tsv tsv (transcript quantifications) 27.4 MB
ENCFF554TAS.bigWig bigWig (plus strand signal of unique reads) 78.8 MB
ENCFF568GTS.bigWig bigWig (plus strand signal of unique reads) 72.8 MB
ENCFF595DBX.bam bam (transcriptome alignments) 5.1 GB
ENCFF605ZRO.bigWig bigWig (plus strand signal of all reads) 89.2 MB
ENCFF607ECD.bam bam (alignments) 4.7 GB
ENCFF613DOQ.bam bam (transcriptome alignments) 5.2 GB
ENCFF619FKY.tsv tsv (gene quantifications) 9.1 MB
ENCFF629AHG.bigWig bigWig (plus strand signal of unique reads) 82.8 MB
ENCFF629EBP.tsv tsv (gene quantifications) 10.4 MB
ENCFF655KFO.tsv tsv (transcript quantifications) 27.4 MB
ENCFF662QAF.bigWig bigWig (plus strand signal of all reads) 84.1 MB
ENCFF671GZB.bam bam (alignments) 3.8 GB
ENCFF690JCE.tsv tsv (differential expression quantifications) 5.5 MB
ENCFF704PZS.bigWig bigWig (minus strand signal of unique reads) 70.8 MB
ENCFF704TEL.bam bam (alignments) 3.8 GB
ENCFF713HJM.bam bam (alignments) 4.0 GB
ENCFF717JCC.bigWig bigWig (plus strand signal of all reads) 83.9 MB
ENCFF719VUZ.bigWig bigWig (minus strand signal of unique reads) 79.8 MB
ENCFF768MPI.bigWig bigWig (minus strand signal of all reads) 91.6 MB
ENCFF776DIS.bigWig bigWig (minus strand signal of all reads) 91.6 MB
ENCFF787YUM.bigWig bigWig (minus strand signal of unique reads) 78.7 MB
ENCFF806ZJY.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF808BOH.bigWig bigWig (minus strand signal of unique reads) 77.6 MB
ENCFF827FVS.tsv tsv (gene quantifications) 9.4 MB
ENCFF845JCS.bigWig bigWig (plus strand signal of unique reads) 79.6 MB
ENCFF878ECZ.bigWig bigWig (minus strand signal of unique reads) 72.3 MB
ENCFF878WKV.bigWig bigWig (minus strand signal of all reads) 82.9 MB
ENCFF883JUV.bigWig bigWig (minus strand signal of all reads) 88.7 MB
ENCFF885HLP.bigWig bigWig (plus strand signal of all reads) 92.7 MB
ENCFF892EYZ.tsv tsv (transcript quantifications) 29.8 MB
ENCFF899HNR.bam bam (alignments) 4.4 GB
ENCFF909QZQ.bigWig bigWig (plus strand signal of unique reads) 77.8 MB
ENCFF910TWF.bigWig bigWig (plus strand signal of all reads) 91.7 MB
ENCFF927FKX.bigWig bigWig (minus strand signal of all reads) 82.1 MB
ENCFF936BXR.bam bam (transcriptome alignments) 5.2 GB
ENCFF938REE.fastq fastq (reads) 2.4 GB
ENCFF954RHB.tsv tsv (differential expression quantifications) 4.1 MB
ENCFF970PGN.tsv tsv (gene quantifications) 9.1 MB
ENCFF972WOE.bigWig bigWig (minus strand signal of unique reads) 77.2 MB
ENCFF977XHH.bigWig bigWig (minus strand signal of all reads) 81.0 MB
ENCFF994RQY.tsv tsv (differential expression quantifications) 1.9 MB
ENCSR560AYQ ENCSR · via encode_api

shRNA knockdown against RBM34 in K562 cells followed by RNA-seq. (RBM34-LV11)

Homo sapiens

92 data files
FileTypeSize
ENCFF002SRV.bam bam (alignments) 3.8 GB
ENCFF005LCS.bigWig bigWig (plus strand signal of all reads) 122.5 MB
ENCFF016FUG.bigWig bigWig (plus strand signal of all reads) 103.7 MB
ENCFF026NSC.fastq fastq (reads) 2.0 GB
ENCFF035BPK.bigWig bigWig (plus strand signal of all reads) 122.3 MB
ENCFF043MHW.bigWig bigWig (minus strand signal of all reads) 103.9 MB
ENCFF046ULT.tsv tsv (gene quantifications) 9.4 MB
ENCFF050VQL.bigWig bigWig (minus strand signal of all reads) 125.9 MB
ENCFF051QZI.bam bam (transcriptome alignments) 4.3 GB
ENCFF077KOJ.bigWig bigWig (minus strand signal of unique reads) 94.0 MB
ENCFF077OHP.bigWig bigWig (minus strand signal of unique reads) 104.3 MB
ENCFF077VJQ.bam bam (alignments) 3.0 GB
ENCFF088VIN.bam bam (alignments) 3.6 GB
ENCFF097YRN.tsv tsv (differential expression quantifications) 5.4 MB
ENCFF105BHL.bigWig bigWig (minus strand signal of all reads) 120.6 MB
ENCFF131VFG.bam bam (transcriptome alignments) 4.0 GB
ENCFF133ZUS.bigWig bigWig (minus strand signal of unique reads) 108.5 MB
ENCFF141DAH.bigWig bigWig (plus strand signal of all reads) 124.8 MB
ENCFF152BFS.bigWig bigWig (plus strand signal of unique reads) 113.6 MB
ENCFF166RTI.bam bam (alignments) 2.9 GB
ENCFF172GTQ.fastq fastq (reads) 2.1 GB
ENCFF182GNR.tsv tsv (gene quantifications) 9.1 MB
ENCFF189EPF.bigWig bigWig (plus strand signal of all reads) 121.7 MB
ENCFF225DPS.tsv tsv (gene quantifications) 10.4 MB
ENCFF237III.bigWig bigWig (plus strand signal of unique reads) 96.7 MB
ENCFF247CQQ.tar tar (differential splicing quantifications) 3.3 MB
ENCFF253SNC.bigWig bigWig (minus strand signal of all reads) 97.5 MB
ENCFF255AAO.tsv tsv (transcript quantifications) 25.3 MB
ENCFF261DGH.bigWig bigWig (minus strand signal of unique reads) 97.7 MB
ENCFF265BNV.bigWig bigWig (minus strand signal of unique reads) 92.7 MB
ENCFF280EAQ.bigWig bigWig (minus strand signal of all reads) 101.7 MB
ENCFF288FGU.bam bam (alignments) 4.1 GB
ENCFF293FYT.bigWig bigWig (plus strand signal of unique reads) 102.2 MB
ENCFF298LXP.bam bam (transcriptome alignments) 4.7 GB
ENCFF304KYB.bigWig bigWig (plus strand signal of all reads) 113.1 MB
ENCFF310ENZ.bigWig bigWig (minus strand signal of all reads) 125.9 MB
ENCFF313ICC.fastq fastq (reads) 2.0 GB
ENCFF359MEB.tsv tsv (gene quantifications) 10.4 MB
ENCFF364DMH.tsv tsv (differential expression quantifications) 1.6 MB
ENCFF365ZPO.tsv tsv (transcript quantifications) 29.8 MB
ENCFF378NVK.tsv tsv (transcript quantifications) 27.4 MB
ENCFF385CHL.tsv tsv (differential expression quantifications) 4.3 MB
ENCFF385UZG.bam bam (alignments) 2.8 GB
ENCFF390ZZR.bam bam (alignments) 2.8 GB
ENCFF403UQR.bigWig bigWig (minus strand signal of unique reads) 95.4 MB
ENCFF411WMR.tsv tsv (transcript quantifications) 29.8 MB
ENCFF412NEN.bigWig bigWig (minus strand signal of all reads) 123.0 MB
ENCFF418VWA.bigWig bigWig (plus strand signal of unique reads) 98.5 MB
ENCFF429UKX.bam bam (transcriptome alignments) 3.9 GB
ENCFF437IAB.tsv tsv (transcript quantifications) 27.4 MB
ENCFF441NIR.bigWig bigWig (minus strand signal of all reads) 120.8 MB
ENCFF468MHG.bam bam (transcriptome alignments) 3.7 GB
ENCFF474DXG.bigWig bigWig (plus strand signal of all reads) 106.7 MB
ENCFF483VRQ.bigWig bigWig (minus strand signal of unique reads) 99.0 MB
ENCFF497TKA.tsv tsv (gene quantifications) 9.1 MB
ENCFF505TBO.bam bam (alignments) 3.1 GB
ENCFF506IYR.bigWig bigWig (plus strand signal of unique reads) 102.4 MB
ENCFF542AAZ.bigWig bigWig (plus strand signal of unique reads) 95.9 MB
ENCFF545WGW.bigWig bigWig (minus strand signal of all reads) 120.0 MB
ENCFF547BQR.bigWig bigWig (plus strand signal of unique reads) 113.1 MB
ENCFF554SGT.tar tar (differential splicing quantifications) 15.5 MB
ENCFF557CRM.bigWig bigWig (minus strand signal of unique reads) 104.5 MB
ENCFF561CKO.tsv tsv (transcript quantifications) 24.8 MB
ENCFF561RMU.bigWig bigWig (minus strand signal of unique reads) 88.2 MB
ENCFF602FGD.bigWig bigWig (minus strand signal of unique reads) 110.2 MB
ENCFF605AHY.bam bam (alignments) 3.8 GB
ENCFF617BWZ.tar tar (differential splicing quantifications) 3.8 MB
ENCFF629RTA.tsv tsv (gene quantifications) 9.4 MB
ENCFF631PBE.bam bam (transcriptome alignments) 3.6 GB
ENCFF661ATM.tsv tsv (transcript quantifications) 25.3 MB
ENCFF673GAB.bam bam (alignments) 4.1 GB
ENCFF679NOH.bigWig bigWig (plus strand signal of unique reads) 107.6 MB
ENCFF712YUK.bam bam (alignments) 3.0 GB
ENCFF715EHE.fastq fastq (reads) 1.9 GB
ENCFF720IJN.bigWig bigWig (plus strand signal of unique reads) 111.8 MB
ENCFF726LED.bigWig bigWig (plus strand signal of unique reads) 107.1 MB
ENCFF735KUE.bigWig bigWig (plus strand signal of unique reads) 91.0 MB
ENCFF735PWG.tsv tsv (transcript quantifications) 24.8 MB
ENCFF744AER.bigWig bigWig (plus strand signal of all reads) 127.8 MB
ENCFF792RXY.bigWig bigWig (minus strand signal of unique reads) 103.9 MB
ENCFF821GCE.bigWig bigWig (minus strand signal of all reads) 108.2 MB
ENCFF834ZUY.bigWig bigWig (plus strand signal of unique reads) 107.6 MB
ENCFF846CMY.bigWig bigWig (plus strand signal of all reads) 127.8 MB
ENCFF865IPE.bigWig bigWig (plus strand signal of all reads) 99.4 MB
ENCFF880KHR.bam bam (alignments) 3.8 GB
ENCFF920WFU.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF935EDX.bigWig bigWig (minus strand signal of all reads) 110.7 MB
ENCFF938CGW.bigWig bigWig (plus strand signal of all reads) 110.0 MB
ENCFF944JEM.bigWig bigWig (minus strand signal of unique reads) 109.8 MB
ENCFF944PKR.tsv tsv (differential expression quantifications) 2.8 MB
ENCFF953QKS.bigWig bigWig (minus strand signal of all reads) 104.6 MB
ENCFF984EQP.bigWig bigWig (plus strand signal of all reads) 105.6 MB
ENCSR408SDL ENCSR · via encode_api

shRNA knockdown against SMNDC1 in K562 cells followed by RNA-seq. (SMNDC1 BGKLV13)

Homo sapiens

92 data files
FileTypeSize
ENCFF035ASW.bigWig bigWig (plus strand signal of unique reads) 80.4 MB
ENCFF039EFY.bam bam (alignments) 4.8 GB
ENCFF048RYO.tsv tsv (transcript quantifications) 25.3 MB
ENCFF049RPB.bigWig bigWig (plus strand signal of all reads) 78.3 MB
ENCFF055RKR.bigWig bigWig (plus strand signal of all reads) 90.0 MB
ENCFF066GOH.tsv tsv (gene quantifications) 9.4 MB
ENCFF067KGT.tsv tsv (differential expression quantifications) 4.1 MB
ENCFF077YHI.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF099OJD.bigWig bigWig (plus strand signal of all reads) 81.5 MB
ENCFF111EMX.bam bam (alignments) 4.8 GB
ENCFF120EIB.bigWig bigWig (minus strand signal of all reads) 95.2 MB
ENCFF120JPK.bigWig bigWig (minus strand signal of all reads) 87.6 MB
ENCFF150TGC.bigWig bigWig (minus strand signal of unique reads) 79.0 MB
ENCFF152IUL.bam bam (alignments) 4.7 GB
ENCFF157PNU.bigWig bigWig (plus strand signal of unique reads) 83.2 MB
ENCFF160AIN.bam bam (alignments) 3.8 GB
ENCFF173GPG.bigWig bigWig (minus strand signal of unique reads) 78.5 MB
ENCFF208QFA.bigWig bigWig (plus strand signal of unique reads) 76.7 MB
ENCFF210NLD.bigWig bigWig (plus strand signal of all reads) 89.9 MB
ENCFF213KGT.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF219QJP.bigWig bigWig (plus strand signal of unique reads) 79.7 MB
ENCFF229XJC.bam bam (alignments) 4.0 GB
ENCFF263FIQ.bigWig bigWig (plus strand signal of unique reads) 72.7 MB
ENCFF265DBZ.bam bam (transcriptome alignments) 5.4 GB
ENCFF281FPU.bam bam (alignments) 3.8 GB
ENCFF285TAQ.fastq fastq (reads) 2.4 GB
ENCFF295QFM.bigWig bigWig (plus strand signal of all reads) 89.0 MB
ENCFF310DOQ.bigWig bigWig (minus strand signal of all reads) 97.2 MB
ENCFF311IFU.bigWig bigWig (minus strand signal of unique reads) 86.3 MB
ENCFF313TFA.bigWig bigWig (minus strand signal of unique reads) 74.6 MB
ENCFF329FOM.bigWig bigWig (minus strand signal of unique reads) 70.7 MB
ENCFF345TUX.tar tar (differential splicing quantifications) 4.2 MB
ENCFF372MQA.bigWig bigWig (minus strand signal of all reads) 97.2 MB
ENCFF378COG.bigWig bigWig (minus strand signal of unique reads) 82.2 MB
ENCFF394KPI.bam bam (transcriptome alignments) 5.1 GB
ENCFF410MUZ.bigWig bigWig (plus strand signal of unique reads) 76.5 MB
ENCFF413EVN.tsv tsv (transcript quantifications) 24.9 MB
ENCFF413LPQ.bam bam (alignments) 4.1 GB
ENCFF413OBK.bigWig bigWig (minus strand signal of unique reads) 79.2 MB
ENCFF421MHX.bam bam (alignments) 4.8 GB
ENCFF425VEN.tsv tsv (gene quantifications) 9.1 MB
ENCFF431KSR.bigWig bigWig (minus strand signal of all reads) 84.0 MB
ENCFF433QEV.bigWig bigWig (plus strand signal of unique reads) 84.5 MB
ENCFF434VNT.tsv tsv (transcript quantifications) 27.4 MB
ENCFF453VRP.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF478JXM.bigWig bigWig (minus strand signal of all reads) 88.6 MB
ENCFF479JAI.bigWig bigWig (minus strand signal of all reads) 88.8 MB
ENCFF486SZC.bam bam (transcriptome alignments) 5.1 GB
ENCFF509CEL.tsv tsv (gene quantifications) 9.1 MB
ENCFF510BXO.bigWig bigWig (plus strand signal of all reads) 98.7 MB
ENCFF512DPG.bigWig bigWig (minus strand signal of all reads) 89.1 MB
ENCFF523RGQ.bigWig bigWig (minus strand signal of unique reads) 77.3 MB
ENCFF527ORE.bam bam (transcriptome alignments) 5.8 GB
ENCFF527QRZ.bigWig bigWig (plus strand signal of all reads) 85.7 MB
ENCFF528XJH.bigWig bigWig (plus strand signal of unique reads) 88.5 MB
ENCFF532TFW.bigWig bigWig (plus strand signal of all reads) 82.2 MB
ENCFF574GCP.bigWig bigWig (plus strand signal of all reads) 96.7 MB
ENCFF587IKN.fastq fastq (reads) 2.5 GB
ENCFF587PBC.tsv tsv (transcript quantifications) 29.8 MB
ENCFF591TCQ.bigWig bigWig (plus strand signal of unique reads) 88.5 MB
ENCFF594BHL.fastq fastq (reads) 2.5 GB
ENCFF609OSD.bam bam (alignments) 4.0 GB
ENCFF615IDJ.bigWig bigWig (plus strand signal of all reads) 98.7 MB
ENCFF620CJN.tsv tsv (transcript quantifications) 24.9 MB
ENCFF645FBD.tsv tsv (gene quantifications) 10.4 MB
ENCFF651UOX.fastq fastq (reads) 2.6 GB
ENCFF663SNE.bigWig bigWig (minus strand signal of all reads) 88.8 MB
ENCFF708YQO.bigWig bigWig (minus strand signal of unique reads) 86.0 MB
ENCFF712RHO.bigWig bigWig (minus strand signal of unique reads) 74.8 MB
ENCFF723GAU.tsv tsv (transcript quantifications) 27.3 MB
ENCFF728JEF.bigWig bigWig (minus strand signal of unique reads) 81.2 MB
ENCFF729LLD.bigWig bigWig (minus strand signal of unique reads) 85.4 MB
ENCFF750GUD.bam bam (alignments) 4.0 GB
ENCFF755KEU.bam bam (alignments) 4.5 GB
ENCFF767VDD.bam bam (alignments) 4.8 GB
ENCFF770ZIK.bam bam (transcriptome alignments) 6.1 GB
ENCFF792HBE.bigWig bigWig (minus strand signal of all reads) 76.9 MB
ENCFF793FOX.bigWig bigWig (plus strand signal of all reads) 90.9 MB
ENCFF804SHF.tsv tsv (gene quantifications) 9.4 MB
ENCFF836BAQ.bigWig bigWig (plus strand signal of all reads) 90.1 MB
ENCFF846NWQ.bigWig bigWig (minus strand signal of all reads) 80.4 MB
ENCFF861DIB.bigWig bigWig (plus strand signal of unique reads) 80.9 MB
ENCFF873QJP.tsv tsv (transcript quantifications) 25.3 MB
ENCFF875IJL.tar tar (differential splicing quantifications) 15.4 MB
ENCFF877RBH.bigWig bigWig (minus strand signal of all reads) 80.6 MB
ENCFF882GNT.tar tar (differential splicing quantifications) 3.5 MB
ENCFF889MGU.tsv tsv (differential expression quantifications) 2.6 MB
ENCFF895HGP.bigWig bigWig (plus strand signal of unique reads) 87.6 MB
ENCFF948AAN.bam bam (transcriptome alignments) 5.4 GB
ENCFF958VXN.bigWig bigWig (plus strand signal of unique reads) 81.4 MB
ENCFF986UWJ.tsv tsv (gene quantifications) 10.4 MB
ENCFF990WUN.tsv tsv (transcript quantifications) 29.8 MB
ENCSR945UYL ENCSR · via encode_api

shRNA knockdown against G3BP2 in HepG2 cells followed by RNA-seq. (G3BP2-BGHLV12)

Homo sapiens

92 data files
FileTypeSize
ENCFF011KEU.bigWig bigWig (plus strand signal of unique reads) 91.9 MB
ENCFF021DXZ.bigWig bigWig (plus strand signal of unique reads) 87.9 MB
ENCFF024MUN.tsv tsv (transcript quantifications) 24.9 MB
ENCFF035NBS.bam bam (alignments) 4.9 GB
ENCFF053PVT.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF091KLV.bigWig bigWig (plus strand signal of unique reads) 87.1 MB
ENCFF102YSQ.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF119RTU.tsv tsv (transcript quantifications) 24.9 MB
ENCFF129JWT.fastq fastq (reads) 3.3 GB
ENCFF136FJL.bigWig bigWig (minus strand signal of unique reads) 89.1 MB
ENCFF159BWL.tsv tsv (transcript quantifications) 25.3 MB
ENCFF161DJU.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF165DPW.bam bam (transcriptome alignments) 9.5 GB
ENCFF175MMB.tsv tsv (gene quantifications) 10.4 MB
ENCFF190AYJ.tar tar (differential splicing quantifications) 16.8 MB
ENCFF207ROP.tsv tsv (transcript quantifications) 27.4 MB
ENCFF225GRL.bigWig bigWig (minus strand signal of unique reads) 85.7 MB
ENCFF228YMB.bigWig bigWig (plus strand signal of all reads) 100.0 MB
ENCFF237LYS.bigWig bigWig (minus strand signal of unique reads) 89.6 MB
ENCFF252LJU.bam bam (alignments) 6.6 GB
ENCFF261WGP.bam bam (transcriptome alignments) 7.8 GB
ENCFF284ZEF.bigWig bigWig (minus strand signal of unique reads) 85.2 MB
ENCFF317OMJ.bam bam (transcriptome alignments) 8.4 GB
ENCFF320DLM.tsv tsv (gene quantifications) 10.4 MB
ENCFF323ECC.bigWig bigWig (plus strand signal of all reads) 99.5 MB
ENCFF339GVB.bigWig bigWig (plus strand signal of unique reads) 91.6 MB
ENCFF342VTJ.bigWig bigWig (plus strand signal of all reads) 98.7 MB
ENCFF345NVD.bigWig bigWig (minus strand signal of all reads) 98.6 MB
ENCFF346MFF.fastq fastq (reads) 3.3 GB
ENCFF348RAC.bigWig bigWig (minus strand signal of unique reads) 80.3 MB
ENCFF351ZYR.bigWig bigWig (minus strand signal of all reads) 98.5 MB
ENCFF367YFT.bigWig bigWig (minus strand signal of all reads) 97.3 MB
ENCFF373KIW.tar tar (differential splicing quantifications) 3.4 MB
ENCFF375AEK.bam bam (alignments) 5.5 GB
ENCFF377RFW.bam bam (transcriptome alignments) 8.5 GB
ENCFF383DLH.fastq fastq (reads) 3.6 GB
ENCFF387WZC.bam bam (alignments) 4.9 GB
ENCFF436WJG.bigWig bigWig (plus strand signal of all reads) 99.9 MB
ENCFF450FPW.bigWig bigWig (plus strand signal of all reads) 91.0 MB
ENCFF454ZIY.bigWig bigWig (plus strand signal of unique reads) 84.3 MB
ENCFF460APJ.bigWig bigWig (minus strand signal of all reads) 87.1 MB
ENCFF478UOM.bam bam (alignments) 5.8 GB
ENCFF483IXC.bigWig bigWig (minus strand signal of unique reads) 89.7 MB
ENCFF488ASP.bigWig bigWig (minus strand signal of all reads) 87.6 MB
ENCFF489RAX.bigWig bigWig (plus strand signal of unique reads) 87.9 MB
ENCFF495GPN.bam bam (alignments) 5.3 GB
ENCFF501VJF.bigWig bigWig (plus strand signal of unique reads) 82.5 MB
ENCFF502OFW.bigWig bigWig (minus strand signal of all reads) 98.5 MB
ENCFF510ECG.bigWig bigWig (minus strand signal of unique reads) 89.6 MB
ENCFF543VNU.bigWig bigWig (plus strand signal of all reads) 91.4 MB
ENCFF562NOS.bam bam (alignments) 5.3 GB
ENCFF565IUW.fastq fastq (reads) 3.6 GB
ENCFF580HIA.bigWig bigWig (minus strand signal of all reads) 91.9 MB
ENCFF580HUC.bam bam (transcriptome alignments) 8.7 GB
ENCFF613KJJ.bigWig bigWig (minus strand signal of all reads) 90.0 MB
ENCFF616DWA.tsv tsv (transcript quantifications) 25.3 MB
ENCFF631YOK.tsv tsv (transcript quantifications) 27.4 MB
ENCFF637ALZ.bigWig bigWig (plus strand signal of all reads) 89.2 MB
ENCFF650ESR.bigWig bigWig (minus strand signal of all reads) 90.7 MB
ENCFF659XOQ.tsv tsv (differential expression quantifications) 1.8 MB
ENCFF663ATE.bigWig bigWig (plus strand signal of all reads) 92.4 MB
ENCFF676EZG.bigWig bigWig (minus strand signal of unique reads) 82.1 MB
ENCFF688ZOI.tsv tsv (differential expression quantifications) 4.3 MB
ENCFF697WRT.bigWig bigWig (plus strand signal of unique reads) 91.3 MB
ENCFF699LEZ.bam bam (transcriptome alignments) 7.7 GB
ENCFF701QTC.bigWig bigWig (minus strand signal of unique reads) 89.4 MB
ENCFF722VEX.tar tar (differential splicing quantifications) 4.2 MB
ENCFF734KZN.bigWig bigWig (plus strand signal of all reads) 88.8 MB
ENCFF734MSX.bigWig bigWig (minus strand signal of unique reads) 85.1 MB
ENCFF739NFG.bam bam (alignments) 6.3 GB
ENCFF743UID.bigWig bigWig (plus strand signal of all reads) 93.5 MB
ENCFF778YPI.tsv tsv (gene quantifications) 9.4 MB
ENCFF779NOY.tsv tsv (gene quantifications) 9.1 MB
ENCFF782XBV.bigWig bigWig (minus strand signal of all reads) 89.5 MB
ENCFF794JFM.bigWig bigWig (minus strand signal of unique reads) 85.8 MB
ENCFF798CJD.tsv tsv (gene quantifications) 9.1 MB
ENCFF798TJJ.bigWig bigWig (minus strand signal of unique reads) 88.7 MB
ENCFF806IQP.tsv tsv (transcript quantifications) 29.8 MB
ENCFF820DSE.bigWig bigWig (plus strand signal of unique reads) 87.1 MB
ENCFF854RIO.bigWig bigWig (plus strand signal of all reads) 100.0 MB
ENCFF857UAA.bam bam (alignments) 5.0 GB
ENCFF891RQO.bigWig bigWig (plus strand signal of unique reads) 91.9 MB
ENCFF898IFK.bigWig bigWig (plus strand signal of all reads) 99.6 MB
ENCFF911UVT.bigWig bigWig (plus strand signal of unique reads) 92.0 MB
ENCFF912AYL.bam bam (alignments) 6.6 GB
ENCFF919ODG.bam bam (alignments) 6.0 GB
ENCFF928NOU.tsv tsv (transcript quantifications) 29.8 MB
ENCFF934WQO.bigWig bigWig (minus strand signal of all reads) 98.0 MB
ENCFF970EMV.bigWig bigWig (plus strand signal of unique reads) 90.8 MB
ENCFF980MEG.tsv tsv (gene quantifications) 9.5 MB
ENCFF988EGT.bam bam (alignments) 6.0 GB
ENCFF994SJT.bigWig bigWig (minus strand signal of all reads) 97.9 MB
ENCSR361LBE ENCSR · via encode_api

shRNA knockdown against NCBP2 in K562 cells followed by RNA-seq. (NCBP2-LV08)

Homo sapiens

92 data files
FileTypeSize
ENCFF005WQJ.bigWig bigWig (plus strand signal of all reads) 80.6 MB
ENCFF023LDA.bigWig bigWig (plus strand signal of all reads) 91.1 MB
ENCFF034CXE.bigWig bigWig (minus strand signal of unique reads) 73.7 MB
ENCFF079ZUF.bigWig bigWig (plus strand signal of unique reads) 79.9 MB
ENCFF085QHB.bigWig bigWig (minus strand signal of all reads) 87.4 MB
ENCFF098SYV.bigWig bigWig (minus strand signal of unique reads) 78.7 MB
ENCFF101YXQ.bam bam (alignments) 4.5 GB
ENCFF106ZYZ.tsv tsv (gene quantifications) 9.5 MB
ENCFF126VCJ.bigWig bigWig (plus strand signal of all reads) 91.1 MB
ENCFF127JQF.bigWig bigWig (plus strand signal of unique reads) 72.0 MB
ENCFF131HYI.tsv tsv (gene quantifications) 10.4 MB
ENCFF154DDX.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF163RDZ.bam bam (transcriptome alignments) 5.0 GB
ENCFF173YRT.tsv tsv (transcript quantifications) 27.4 MB
ENCFF201RAW.bigWig bigWig (minus strand signal of all reads) 76.7 MB
ENCFF209PZQ.bam bam (transcriptome alignments) 5.6 GB
ENCFF226COX.bigWig bigWig (plus strand signal of all reads) 75.7 MB
ENCFF226ZRD.tsv tsv (differential expression quantifications) 5.4 MB
ENCFF239LCU.bigWig bigWig (minus strand signal of unique reads) 78.0 MB
ENCFF247BRR.fastq fastq (reads) 2.4 GB
ENCFF254GKJ.tsv tsv (gene quantifications) 10.4 MB
ENCFF256ZTC.bam bam (transcriptome alignments) 5.6 GB
ENCFF264VUF.fastq fastq (reads) 2.3 GB
ENCFF293AGK.bigWig bigWig (plus strand signal of unique reads) 74.0 MB
ENCFF295TES.tar tar (differential splicing quantifications) 3.5 MB
ENCFF324NCL.bigWig bigWig (plus strand signal of all reads) 88.7 MB
ENCFF328LIJ.bigWig bigWig (plus strand signal of all reads) 77.9 MB
ENCFF334JDB.bigWig bigWig (minus strand signal of all reads) 88.4 MB
ENCFF337ZSV.bigWig bigWig (plus strand signal of unique reads) 80.0 MB
ENCFF342FMY.bam bam (alignments) 4.3 GB
ENCFF362WTW.bigWig bigWig (plus strand signal of all reads) 81.9 MB
ENCFF385EZL.bam bam (alignments) 4.5 GB
ENCFF391HZS.bigWig bigWig (minus strand signal of unique reads) 78.3 MB
ENCFF404YDS.bigWig bigWig (minus strand signal of unique reads) 77.9 MB
ENCFF413AVL.bigWig bigWig (minus strand signal of all reads) 80.2 MB
ENCFF414MSU.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF417QKM.bigWig bigWig (minus strand signal of all reads) 77.9 MB
ENCFF422IKP.tsv tsv (transcript quantifications) 27.3 MB
ENCFF427CQB.tsv tsv (differential expression quantifications) 4.2 MB
ENCFF428HXP.tsv tsv (transcript quantifications) 24.9 MB
ENCFF433DHQ.bam bam (alignments) 3.7 GB
ENCFF438BGG.bigWig bigWig (minus strand signal of unique reads) 72.1 MB
ENCFF452DTZ.bigWig bigWig (minus strand signal of all reads) 88.4 MB
ENCFF472QNJ.bigWig bigWig (plus strand signal of all reads) 88.8 MB
ENCFF477MHU.bam bam (transcriptome alignments) 4.9 GB
ENCFF483MQL.bigWig bigWig (plus strand signal of unique reads) 74.6 MB
ENCFF488YZO.tsv tsv (gene quantifications) 9.1 MB
ENCFF508UPR.bam bam (alignments) 4.5 GB
ENCFF533EEV.bam bam (alignments) 3.7 GB
ENCFF541YPW.bigWig bigWig (plus strand signal of all reads) 89.8 MB
ENCFF545SKK.bigWig bigWig (plus strand signal of unique reads) 80.4 MB
ENCFF547YJC.tar tar (differential splicing quantifications) 14.6 MB
ENCFF566VPW.bigWig bigWig (minus strand signal of all reads) 89.7 MB
ENCFF598CLI.tar tar (differential splicing quantifications) 4.0 MB
ENCFF607XDJ.bigWig bigWig (plus strand signal of unique reads) 81.0 MB
ENCFF610TDT.bigWig bigWig (plus strand signal of unique reads) 75.9 MB
ENCFF617UYM.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF618HAF.bam bam (transcriptome alignments) 5.0 GB
ENCFF621EOU.bigWig bigWig (minus strand signal of unique reads) 77.8 MB
ENCFF637DVM.bigWig bigWig (minus strand signal of all reads) 89.7 MB
ENCFF640VNM.bigWig bigWig (plus strand signal of all reads) 89.8 MB
ENCFF648UHH.bigWig bigWig (minus strand signal of unique reads) 69.8 MB
ENCFF652NYB.bigWig bigWig (plus strand signal of unique reads) 75.2 MB
ENCFF658JJH.bam bam (alignments) 3.7 GB
ENCFF668PKY.bigWig bigWig (minus strand signal of all reads) 78.9 MB
ENCFF700ILW.tsv tsv (transcript quantifications) 29.8 MB
ENCFF727SWZ.bigWig bigWig (minus strand signal of all reads) 75.3 MB
ENCFF748DNC.fastq fastq (reads) 2.4 GB
ENCFF753JVA.tsv tsv (gene quantifications) 9.5 MB
ENCFF766OBK.bigWig bigWig (minus strand signal of unique reads) 76.6 MB
ENCFF766YPK.bam bam (alignments) 3.7 GB
ENCFF788KHE.tsv tsv (transcript quantifications) 25.3 MB
ENCFF795WSB.bam bam (alignments) 4.5 GB
ENCFF796OQB.bigWig bigWig (minus strand signal of all reads) 87.3 MB
ENCFF828AEJ.bigWig bigWig (minus strand signal of unique reads) 68.7 MB
ENCFF849NXZ.bigWig bigWig (minus strand signal of unique reads) 72.4 MB
ENCFF850OPP.tsv tsv (transcript quantifications) 25.3 MB
ENCFF867KTQ.bigWig bigWig (minus strand signal of unique reads) 73.3 MB
ENCFF876REL.tsv tsv (transcript quantifications) 29.8 MB
ENCFF878RAU.tsv tsv (gene quantifications) 9.1 MB
ENCFF879SZZ.fastq fastq (reads) 2.3 GB
ENCFF901LFN.bigWig bigWig (minus strand signal of all reads) 74.1 MB
ENCFF909EON.tsv tsv (transcript quantifications) 24.9 MB
ENCFF916RXB.bigWig bigWig (plus strand signal of all reads) 76.9 MB
ENCFF919XQB.bigWig bigWig (plus strand signal of unique reads) 80.1 MB
ENCFF940XVP.bigWig bigWig (plus strand signal of unique reads) 78.9 MB
ENCFF940YBW.bam bam (transcriptome alignments) 5.0 GB
ENCFF944AQJ.bigWig bigWig (plus strand signal of unique reads) 70.8 MB
ENCFF949KGL.bam bam (alignments) 3.7 GB
ENCFF960WWP.bam bam (alignments) 3.7 GB
ENCFF961RVC.bigWig bigWig (plus strand signal of all reads) 79.2 MB
ENCFF982FDC.bam bam (alignments) 4.3 GB
ENCSR302JQA ENCSR · via encode_api

shRNA knockdown against IGF2BP3 in K562 cells followed by RNA-seq. (IGF2BP3-LV11)

Homo sapiens

92 data files
FileTypeSize
ENCFF003POA.bigWig bigWig (plus strand signal of all reads) 88.0 MB
ENCFF015WUZ.bigWig bigWig (minus strand signal of unique reads) 79.2 MB
ENCFF022VBE.bigWig bigWig (minus strand signal of all reads) 85.1 MB
ENCFF032IVJ.bigWig bigWig (plus strand signal of unique reads) 81.4 MB
ENCFF042HTQ.bigWig bigWig (plus strand signal of unique reads) 81.6 MB
ENCFF049NTE.tar tar (differential splicing quantifications) 16.0 MB
ENCFF052SNU.bigWig bigWig (minus strand signal of unique reads) 86.6 MB
ENCFF052XVQ.bam bam (alignments) 3.1 GB
ENCFF053OCI.bam bam (alignments) 4.0 GB
ENCFF068IOD.bigWig bigWig (minus strand signal of all reads) 99.6 MB
ENCFF084CUI.tsv tsv (differential expression quantifications) 5.5 MB
ENCFF088FYY.bigWig bigWig (minus strand signal of unique reads) 79.3 MB
ENCFF088GXK.bam bam (transcriptome alignments) 4.9 GB
ENCFF107CWO.tsv tsv (gene quantifications) 10.4 MB
ENCFF109VUP.bigWig bigWig (plus strand signal of all reads) 100.8 MB
ENCFF112DSY.tar tar (differential splicing quantifications) 3.5 MB
ENCFF119BHJ.fastq fastq (reads) 2.1 GB
ENCFF127EUI.bam bam (transcriptome alignments) 5.7 GB
ENCFF136KIV.bigWig bigWig (minus strand signal of unique reads) 74.0 MB
ENCFF158BPC.bigWig bigWig (plus strand signal of unique reads) 78.6 MB
ENCFF162KZI.tsv tsv (transcript quantifications) 29.8 MB
ENCFF166NMS.bigWig bigWig (plus strand signal of all reads) 101.5 MB
ENCFF173LJC.tsv tsv (transcript quantifications) 25.3 MB
ENCFF183VMP.bigWig bigWig (minus strand signal of unique reads) 87.1 MB
ENCFF193DRK.bigWig bigWig (minus strand signal of all reads) 80.9 MB
ENCFF209YRB.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF216IIG.fastq fastq (reads) 2.2 GB
ENCFF222KHG.tsv tsv (transcript quantifications) 27.4 MB
ENCFF224QTF.fastq fastq (reads) 2.0 GB
ENCFF226CXP.bigWig bigWig (plus strand signal of all reads) 87.8 MB
ENCFF227TIJ.bigWig bigWig (plus strand signal of all reads) 101.4 MB
ENCFF247FLC.bigWig bigWig (plus strand signal of unique reads) 76.2 MB
ENCFF269IUF.bam bam (transcriptome alignments) 4.5 GB
ENCFF272YAV.bigWig bigWig (plus strand signal of all reads) 98.6 MB
ENCFF274PBH.bigWig bigWig (minus strand signal of unique reads) 86.7 MB
ENCFF276KCX.tsv tsv (transcript quantifications) 27.4 MB
ENCFF287PWT.bam bam (alignments) 3.1 GB
ENCFF309VAV.bigWig bigWig (minus strand signal of unique reads) 87.1 MB
ENCFF339IHF.bam bam (alignments) 4.1 GB
ENCFF374YUF.bigWig bigWig (plus strand signal of unique reads) 90.2 MB
ENCFF377GBI.bigWig bigWig (minus strand signal of all reads) 82.8 MB
ENCFF379XHW.bigWig bigWig (plus strand signal of all reads) 84.3 MB
ENCFF389STC.tsv tsv (differential expression quantifications) 2.6 MB
ENCFF437DZT.bam bam (alignments) 2.9 GB
ENCFF437HOX.bigWig bigWig (minus strand signal of all reads) 86.3 MB
ENCFF443BFC.tsv tsv (transcript quantifications) 24.9 MB
ENCFF470IZS.tsv tsv (transcript quantifications) 29.8 MB
ENCFF481RQP.tsv tsv (gene quantifications) 9.1 MB
ENCFF484YEW.tsv tsv (gene quantifications) 9.5 MB
ENCFF503JIM.bigWig bigWig (plus strand signal of unique reads) 88.9 MB
ENCFF504IEB.bigWig bigWig (minus strand signal of all reads) 83.8 MB
ENCFF505EVX.tsv tsv (gene quantifications) 9.5 MB
ENCFF507XMS.tsv tsv (gene quantifications) 9.1 MB
ENCFF508COE.bigWig bigWig (minus strand signal of unique reads) 79.7 MB
ENCFF509LWU.bigWig bigWig (minus strand signal of unique reads) 76.5 MB
ENCFF509OZH.bigWig bigWig (minus strand signal of all reads) 100.2 MB
ENCFF521XGX.bigWig bigWig (plus strand signal of all reads) 99.5 MB
ENCFF531HKZ.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF542GWH.bam bam (alignments) 4.0 GB
ENCFF572REL.bigWig bigWig (plus strand signal of unique reads) 81.4 MB
ENCFF582SSC.tsv tsv (differential expression quantifications) 4.3 MB
ENCFF584YTY.bigWig bigWig (plus strand signal of all reads) 85.1 MB
ENCFF610ZJK.bigWig bigWig (plus strand signal of all reads) 82.5 MB
ENCFF618IIP.bigWig bigWig (plus strand signal of unique reads) 88.9 MB
ENCFF646QOX.bigWig bigWig (plus strand signal of unique reads) 79.7 MB
ENCFF657NCW.bigWig bigWig (plus strand signal of unique reads) 89.4 MB
ENCFF687ZMC.tar tar (differential splicing quantifications) 4.1 MB
ENCFF720VEG.bam bam (transcriptome alignments) 4.5 GB
ENCFF721YIB.bigWig bigWig (minus strand signal of unique reads) 77.8 MB
ENCFF725ZTU.bigWig bigWig (plus strand signal of unique reads) 88.3 MB
ENCFF729ESO.bam bam (transcriptome alignments) 4.8 GB
ENCFF742QZP.bigWig bigWig (minus strand signal of unique reads) 88.1 MB
ENCFF742ZRW.bigWig bigWig (plus strand signal of unique reads) 89.2 MB
ENCFF744KGM.bam bam (alignments) 4.2 GB
ENCFF749WGK.bigWig bigWig (plus strand signal of all reads) 86.3 MB
ENCFF768ZEV.bigWig bigWig (minus strand signal of all reads) 97.3 MB
ENCFF798PEP.bigWig bigWig (plus strand signal of all reads) 99.5 MB
ENCFF810NNL.bigWig bigWig (minus strand signal of all reads) 86.2 MB
ENCFF845VVB.bigWig bigWig (minus strand signal of unique reads) 86.2 MB
ENCFF853BIA.fastq fastq (reads) 2.2 GB
ENCFF855VUC.bam bam (alignments) 4.2 GB
ENCFF867MBC.bam bam (alignments) 3.0 GB
ENCFF877TMK.bam bam (alignments) 3.8 GB
ENCFF885JTS.bam bam (alignments) 2.9 GB
ENCFF898DQU.tsv tsv (transcript quantifications) 25.3 MB
ENCFF910TNH.bigWig bigWig (minus strand signal of all reads) 98.2 MB
ENCFF914ETE.tsv tsv (gene quantifications) 10.4 MB
ENCFF933BTI.bam bam (transcriptome alignments) 5.3 GB
ENCFF962DKS.bigWig bigWig (minus strand signal of all reads) 98.2 MB
ENCFF965HTV.bigWig bigWig (minus strand signal of all reads) 100.3 MB
ENCFF974OAP.tsv tsv (transcript quantifications) 24.9 MB
ENCFF989MPW.bam bam (alignments) 3.1 GB
ENCSR492UFS ENCSR · via encode_api

shRNA knockdown against MATR3 in HepG2 cells followed by RNA-seq. (MATR3 17-BGHLV12)

Homo sapiens

92 data files
FileTypeSize
ENCFF002YQO.bigWig bigWig (minus strand signal of unique reads) 86.5 MB
ENCFF033MYX.bam bam (alignments) 5.5 GB
ENCFF058CEQ.bigWig bigWig (plus strand signal of all reads) 95.9 MB
ENCFF068KRN.bigWig bigWig (minus strand signal of unique reads) 91.7 MB
ENCFF089IKM.bigWig bigWig (minus strand signal of all reads) 100.6 MB
ENCFF090YAE.tsv tsv (transcript quantifications) 29.8 MB
ENCFF099KZJ.bigWig bigWig (minus strand signal of all reads) 100.2 MB
ENCFF101FWC.bam bam (transcriptome alignments) 7.6 GB
ENCFF101MSN.bigWig bigWig (plus strand signal of all reads) 93.4 MB
ENCFF141KNS.tsv tsv (transcript quantifications) 25.3 MB
ENCFF156YJG.bam bam (alignments) 5.4 GB
ENCFF158CDR.bigWig bigWig (minus strand signal of all reads) 90.0 MB
ENCFF162IFR.bigWig bigWig (minus strand signal of unique reads) 89.3 MB
ENCFF166PMW.bigWig bigWig (minus strand signal of all reads) 100.2 MB
ENCFF184HUJ.bam bam (transcriptome alignments) 6.4 GB
ENCFF206MQW.bigWig bigWig (plus strand signal of unique reads) 83.9 MB
ENCFF219OPG.tsv tsv (differential expression quantifications) 2.0 MB
ENCFF221ZUL.tsv tsv (gene quantifications) 10.4 MB
ENCFF225BYG.bigWig bigWig (plus strand signal of all reads) 102.7 MB
ENCFF231BZR.fastq fastq (reads) 2.8 GB
ENCFF246QJB.bam bam (alignments) 5.3 GB
ENCFF257ZZB.bigWig bigWig (minus strand signal of unique reads) 85.2 MB
ENCFF307YFN.bigWig bigWig (plus strand signal of unique reads) 93.6 MB
ENCFF310OEP.fastq fastq (reads) 2.9 GB
ENCFF332QJE.bigWig bigWig (minus strand signal of all reads) 98.7 MB
ENCFF363DHS.tsv tsv (gene quantifications) 10.4 MB
ENCFF363YOS.bigWig bigWig (minus strand signal of unique reads) 86.0 MB
ENCFF365FUM.tsv tsv (transcript quantifications) 29.8 MB
ENCFF378COH.bigWig bigWig (minus strand signal of unique reads) 90.5 MB
ENCFF385HEX.bam bam (alignments) 5.5 GB
ENCFF387CQS.bam bam (alignments) 4.4 GB
ENCFF390CFR.bigWig bigWig (plus strand signal of all reads) 93.1 MB
ENCFF395VUG.tsv tsv (differential expression quantifications) 1.8 MB
ENCFF398IHI.bigWig bigWig (plus strand signal of all reads) 102.9 MB
ENCFF402MVG.fastq fastq (reads) 3.0 GB
ENCFF403EDP.bigWig bigWig (plus strand signal of unique reads) 93.6 MB
ENCFF416VMH.bigWig bigWig (minus strand signal of all reads) 90.9 MB
ENCFF425LJJ.bam bam (alignments) 5.4 GB
ENCFF428CXA.bigWig bigWig (minus strand signal of unique reads) 80.2 MB
ENCFF429UAI.tar tar (differential splicing quantifications) 3.5 MB
ENCFF430KIN.bigWig bigWig (minus strand signal of unique reads) 91.7 MB
ENCFF459ELD.bigWig bigWig (minus strand signal of all reads) 98.7 MB
ENCFF497DMZ.tsv tsv (gene quantifications) 9.4 MB
ENCFF500RNM.bigWig bigWig (plus strand signal of unique reads) 94.7 MB
ENCFF510HFS.tsv tsv (gene quantifications) 9.1 MB
ENCFF532AUV.bigWig bigWig (minus strand signal of all reads) 90.8 MB
ENCFF543BMR.tsv tsv (gene quantifications) 9.1 MB
ENCFF544ZTE.bam bam (alignments) 4.5 GB
ENCFF549JHM.bigWig bigWig (minus strand signal of unique reads) 81.0 MB
ENCFF565CPN.bigWig bigWig (plus strand signal of unique reads) 83.0 MB
ENCFF570QZS.bam bam (transcriptome alignments) 6.7 GB
ENCFF573IUP.bigWig bigWig (plus strand signal of unique reads) 88.1 MB
ENCFF574QVX.bam bam (transcriptome alignments) 6.7 GB
ENCFF577TNN.bigWig bigWig (plus strand signal of unique reads) 92.5 MB
ENCFF585JCH.bigWig bigWig (minus strand signal of unique reads) 90.5 MB
ENCFF592PIK.tsv tsv (gene quantifications) 9.4 MB
ENCFF601NSQ.bigWig bigWig (plus strand signal of unique reads) 88.2 MB
ENCFF603JPJ.tsv tsv (transcript quantifications) 27.4 MB
ENCFF609FFO.bigWig bigWig (minus strand signal of all reads) 93.4 MB
ENCFF613AOE.bam bam (alignments) 4.5 GB
ENCFF631QLA.bigWig bigWig (plus strand signal of unique reads) 89.3 MB
ENCFF681ZDR.tsv tsv (transcript quantifications) 27.4 MB
ENCFF688LPZ.bigWig bigWig (plus strand signal of all reads) 101.3 MB
ENCFF689DAV.bigWig bigWig (plus strand signal of unique reads) 89.0 MB
ENCFF700OPB.tsv tsv (differential expression quantifications) 4.4 MB
ENCFF715ZTV.bam bam (alignments) 4.6 GB
ENCFF744CYI.bigWig bigWig (minus strand signal of all reads) 99.2 MB
ENCFF755ZXL.bigWig bigWig (plus strand signal of all reads) 102.7 MB
ENCFF768VKF.bam bam (alignments) 4.4 GB
ENCFF775KDL.bam bam (transcriptome alignments) 7.3 GB
ENCFF780SYO.bam bam (alignments) 5.1 GB
ENCFF785JCG.bam bam (transcriptome alignments) 6.5 GB
ENCFF795JYH.bigWig bigWig (plus strand signal of all reads) 92.5 MB
ENCFF805GVG.bigWig bigWig (minus strand signal of all reads) 86.9 MB
ENCFF812HIN.bigWig bigWig (minus strand signal of unique reads) 90.6 MB
ENCFF821MPK.tar tar (differential splicing quantifications) 4.3 MB
ENCFF825CFI.tar tar (differential splicing quantifications) 16.7 MB
ENCFF859LPF.bigWig bigWig (minus strand signal of unique reads) 85.3 MB
ENCFF878ELZ.bam bam (alignments) 4.5 GB
ENCFF881IFQ.bigWig bigWig (plus strand signal of unique reads) 94.7 MB
ENCFF887XYS.bigWig bigWig (plus strand signal of all reads) 88.3 MB
ENCFF911YMH.tsv tsv (transcript quantifications) 24.9 MB
ENCFF916BQU.tsv tsv (transcript quantifications) 25.3 MB
ENCFF926ERV.tsv tsv (differential expression quantifications) 3.0 MB
ENCFF934NFM.tsv tsv (transcript quantifications) 24.9 MB
ENCFF936FFJ.bigWig bigWig (plus strand signal of all reads) 101.3 MB
ENCFF941HLD.bigWig bigWig (plus strand signal of unique reads) 93.6 MB
ENCFF957LCU.bigWig bigWig (plus strand signal of all reads) 89.3 MB
ENCFF968OEL.fastq fastq (reads) 2.9 GB
ENCFF977OBI.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF977UNM.bigWig bigWig (plus strand signal of all reads) 101.5 MB
ENCFF982UQZ.bigWig bigWig (minus strand signal of all reads) 85.9 MB
ENCSR009PPI ENCSR · via encode_api

shRNA knockdown against FXR1 in HepG2 cells followed by RNA-seq. (FXR1-BGHLV12)

Homo sapiens

92 data files
FileTypeSize
ENCFF004TNJ.bigWig bigWig (plus strand signal of all reads) 100.0 MB
ENCFF030VNQ.bigWig bigWig (plus strand signal of unique reads) 86.8 MB
ENCFF068SMU.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF074HCR.tsv tsv (transcript quantifications) 27.4 MB
ENCFF079ENE.tsv tsv (transcript quantifications) 27.4 MB
ENCFF082WXM.bam bam (transcriptome alignments) 7.1 GB
ENCFF103ECF.bigWig bigWig (minus strand signal of unique reads) 78.7 MB
ENCFF109CVE.bigWig bigWig (minus strand signal of all reads) 87.1 MB
ENCFF113BHR.tsv tsv (gene quantifications) 9.4 MB
ENCFF114TIS.bam bam (alignments) 5.7 GB
ENCFF123LJO.bigWig bigWig (plus strand signal of all reads) 100.0 MB
ENCFF128FTL.fastq fastq (reads) 2.7 GB
ENCFF138EPA.bigWig bigWig (plus strand signal of unique reads) 91.8 MB
ENCFF143DDK.bigWig bigWig (minus strand signal of all reads) 87.0 MB
ENCFF165PWV.bigWig bigWig (minus strand signal of unique reads) 88.2 MB
ENCFF189CAS.bigWig bigWig (plus strand signal of all reads) 92.9 MB
ENCFF209KRP.bigWig bigWig (minus strand signal of all reads) 97.9 MB
ENCFF211LTZ.tsv tsv (differential expression quantifications) 4.4 MB
ENCFF237UFQ.bam bam (transcriptome alignments) 7.1 GB
ENCFF241PCV.bigWig bigWig (minus strand signal of unique reads) 84.2 MB
ENCFF253ZNZ.bigWig bigWig (plus strand signal of unique reads) 87.2 MB
ENCFF289RIR.bigWig bigWig (minus strand signal of all reads) 89.4 MB
ENCFF290USO.tsv tsv (transcript quantifications) 29.8 MB
ENCFF295ASV.tsv tsv (gene quantifications) 9.1 MB
ENCFF313FOH.fastq fastq (reads) 3.1 GB
ENCFF344SCF.tsv tsv (gene quantifications) 10.4 MB
ENCFF348ZYD.bigWig bigWig (minus strand signal of unique reads) 79.4 MB
ENCFF368TDA.tar tar (differential splicing quantifications) 17.0 MB
ENCFF392KBU.bam bam (alignments) 5.1 GB
ENCFF405YST.bigWig bigWig (minus strand signal of unique reads) 81.1 MB
ENCFF425YQM.bam bam (alignments) 5.1 GB
ENCFF445CHH.bam bam (alignments) 5.5 GB
ENCFF446GJD.bigWig bigWig (minus strand signal of unique reads) 89.1 MB
ENCFF450AFM.bigWig bigWig (plus strand signal of unique reads) 90.9 MB
ENCFF453ISS.bigWig bigWig (minus strand signal of unique reads) 88.3 MB
ENCFF472OCK.bigWig bigWig (plus strand signal of all reads) 80.4 MB
ENCFF477BFI.bigWig bigWig (plus strand signal of all reads) 88.8 MB
ENCFF483UYG.tsv tsv (transcript quantifications) 24.9 MB
ENCFF494CAM.tsv tsv (transcript quantifications) 29.8 MB
ENCFF499CMB.bigWig bigWig (minus strand signal of unique reads) 74.6 MB
ENCFF520OPK.bam bam (alignments) 5.7 GB
ENCFF521ENW.bigWig bigWig (plus strand signal of unique reads) 80.5 MB
ENCFF523KYJ.fastq fastq (reads) 3.0 GB
ENCFF525ZNC.bigWig bigWig (minus strand signal of unique reads) 84.7 MB
ENCFF565KJV.bam bam (transcriptome alignments) 8.1 GB
ENCFF566VIB.tsv tsv (differential expression quantifications) 1.8 MB
ENCFF569MFV.bam bam (alignments) 4.6 GB
ENCFF584ZUJ.bam bam (transcriptome alignments) 7.2 GB
ENCFF589HDQ.bigWig bigWig (plus strand signal of unique reads) 76.7 MB
ENCFF600KIJ.tsv tsv (gene quantifications) 9.1 MB
ENCFF604FNC.bigWig bigWig (plus strand signal of all reads) 89.1 MB
ENCFF609GNA.bigWig bigWig (plus strand signal of all reads) 88.9 MB
ENCFF618ONU.tsv tsv (transcript quantifications) 24.9 MB
ENCFF630KCN.bigWig bigWig (plus strand signal of unique reads) 81.9 MB
ENCFF630TVO.tar tar (differential splicing quantifications) 3.5 MB
ENCFF634TQL.tsv tsv (differential expression quantifications) 5.5 MB
ENCFF666TAA.tsv tsv (transcript quantifications) 25.3 MB
ENCFF682KGD.bigWig bigWig (plus strand signal of unique reads) 90.9 MB
ENCFF701JAQ.bam bam (alignments) 4.2 GB
ENCFF710OCB.bigWig bigWig (minus strand signal of all reads) 87.6 MB
ENCFF735QGQ.bigWig bigWig (minus strand signal of unique reads) 75.1 MB
ENCFF756ECG.bigWig bigWig (plus strand signal of unique reads) 83.6 MB
ENCFF760SST.tsv tsv (transcript quantifications) 25.3 MB
ENCFF766PEB.fastq fastq (reads) 2.6 GB
ENCFF783FTE.bigWig bigWig (minus strand signal of unique reads) 73.8 MB
ENCFF793AEU.bigWig bigWig (plus strand signal of all reads) 91.4 MB
ENCFF803NPQ.bigWig bigWig (minus strand signal of all reads) 90.8 MB
ENCFF821DSC.bam bam (transcriptome alignments) 6.3 GB
ENCFF825PDP.bigWig bigWig (minus strand signal of all reads) 81.6 MB
ENCFF827AKA.bigWig bigWig (minus strand signal of all reads) 86.9 MB
ENCFF843QUA.bigWig bigWig (minus strand signal of all reads) 98.1 MB
ENCFF857ESZ.bigWig bigWig (plus strand signal of all reads) 89.2 MB
ENCFF857ZSV.bigWig bigWig (plus strand signal of all reads) 83.5 MB
ENCFF865GTN.bam bam (alignments) 4.0 GB
ENCFF870MTR.bam bam (alignments) 4.0 GB
ENCFF877WYB.bigWig bigWig (plus strand signal of unique reads) 81.0 MB
ENCFF882WCT.bam bam (transcriptome alignments) 6.2 GB
ENCFF893ZYG.tsv tsv (gene quantifications) 9.5 MB
ENCFF894BCJ.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF910JGL.bigWig bigWig (plus strand signal of all reads) 100.0 MB
ENCFF913YXN.tsv tsv (gene quantifications) 10.4 MB
ENCFF939OHJ.bigWig bigWig (minus strand signal of all reads) 78.5 MB
ENCFF947NDF.bigWig bigWig (minus strand signal of all reads) 79.2 MB
ENCFF948FIX.bam bam (alignments) 4.6 GB
ENCFF951FGN.bam bam (alignments) 4.7 GB
ENCFF964FUX.tar tar (differential splicing quantifications) 4.2 MB
ENCFF967KRF.bigWig bigWig (plus strand signal of all reads) 81.0 MB
ENCFF969RLT.bam bam (alignments) 4.8 GB
ENCFF974LEL.bigWig bigWig (minus strand signal of all reads) 97.9 MB
ENCFF987KNC.bigWig bigWig (plus strand signal of unique reads) 77.5 MB
ENCFF987VCQ.bigWig bigWig (plus strand signal of unique reads) 76.1 MB
ENCFF999VBD.bigWig bigWig (minus strand signal of unique reads) 78.1 MB
ENCSR913CAE ENCSR · via encode_api

Control shRNA against no target in K562 cells followed by RNA-seq. (Nontarget-LV08)

Homo sapiens

84 data files
FileTypeSize
ENCFF017WXT.fastq fastq (reads) 2.7 GB
ENCFF025OZM.bam bam (transcriptome alignments) 6.0 GB
ENCFF031EMG.bigWig bigWig (plus strand signal of unique reads) 82.4 MB
ENCFF043RHW.bam bam (alignments) 3.7 GB
ENCFF045DWF.bigWig bigWig (minus strand signal of all reads) 92.0 MB
ENCFF046XZN.bigWig bigWig (plus strand signal of unique reads) 75.5 MB
ENCFF053DTC.bigWig bigWig (minus strand signal of unique reads) 70.4 MB
ENCFF054KQJ.bigWig bigWig (minus strand signal of all reads) 81.6 MB
ENCFF055NMQ.bam bam (transcriptome alignments) 5.4 GB
ENCFF088IUF.tsv tsv (gene quantifications) 9.5 MB
ENCFF099ELC.bigWig bigWig (plus strand signal of all reads) 83.2 MB
ENCFF101YIJ.bigWig bigWig (plus strand signal of unique reads) 72.6 MB
ENCFF121LZF.bigWig bigWig (minus strand signal of all reads) 80.2 MB
ENCFF123TLC.bigWig bigWig (minus strand signal of all reads) 88.1 MB
ENCFF125LSC.bam bam (alignments) 3.6 GB
ENCFF150MMS.bigWig bigWig (plus strand signal of all reads) 100.2 MB
ENCFF155WIS.bigWig bigWig (plus strand signal of unique reads) 82.2 MB
ENCFF164QRQ.bigWig bigWig (minus strand signal of unique reads) 80.1 MB
ENCFF176OMR.tsv tsv (transcript quantifications) 29.8 MB
ENCFF195CCT.bigWig bigWig (minus strand signal of unique reads) 79.9 MB
ENCFF209PLP.bam bam (alignments) 3.6 GB
ENCFF209WRF.bigWig bigWig (plus strand signal of all reads) 89.8 MB
ENCFF258RJQ.bigWig bigWig (plus strand signal of all reads) 99.7 MB
ENCFF259JHK.bigWig bigWig (minus strand signal of all reads) 76.2 MB
ENCFF268SFP.tsv tsv (gene quantifications) 10.4 MB
ENCFF309OOI.bam bam (alignments) 4.2 GB
ENCFF317FPR.bigWig bigWig (minus strand signal of unique reads) 85.9 MB
ENCFF329IVE.bam bam (transcriptome alignments) 5.1 GB
ENCFF339PZW.tsv tsv (transcript quantifications) 24.9 MB
ENCFF366BYZ.bam bam (alignments) 4.3 GB
ENCFF378FDB.bigWig bigWig (plus strand signal of all reads) 93.3 MB
ENCFF380ZJK.bigWig bigWig (plus strand signal of all reads) 100.1 MB
ENCFF392TBN.bigWig bigWig (minus strand signal of unique reads) 86.3 MB
ENCFF410BQT.bigWig bigWig (plus strand signal of unique reads) 78.4 MB
ENCFF428PGF.bigWig bigWig (minus strand signal of unique reads) 80.2 MB
ENCFF451VCI.bam bam (alignments) 4.9 GB
ENCFF461JXT.bigWig bigWig (plus strand signal of all reads) 77.8 MB
ENCFF484VZY.bigWig bigWig (minus strand signal of unique reads) 76.1 MB
ENCFF510CPU.bam bam (alignments) 4.4 GB
ENCFF510GOL.fastq fastq (reads) 2.6 GB
ENCFF519EZP.bigWig bigWig (plus strand signal of unique reads) 88.3 MB
ENCFF527DGH.bigWig bigWig (minus strand signal of unique reads) 73.6 MB
ENCFF535BFZ.bam bam (alignments) 4.2 GB
ENCFF542NNE.bam bam (alignments) 5.2 GB
ENCFF547WMX.bigWig bigWig (minus strand signal of all reads) 90.6 MB
ENCFF556NPQ.bam bam (alignments) 5.2 GB
ENCFF584SGF.bigWig bigWig (plus strand signal of unique reads) 88.5 MB
ENCFF598ZGR.bam bam (alignments) 4.4 GB
ENCFF605PSE.tsv tsv (transcript quantifications) 25.3 MB
ENCFF618YFS.bigWig bigWig (minus strand signal of all reads) 98.3 MB
ENCFF621OHM.bam bam (transcriptome alignments) 5.3 GB
ENCFF638IKV.bigWig bigWig (plus strand signal of all reads) 87.4 MB
ENCFF638SPC.bigWig bigWig (plus strand signal of unique reads) 89.4 MB
ENCFF653RHL.bigWig bigWig (plus strand signal of all reads) 93.3 MB
ENCFF655RHC.tsv tsv (transcript quantifications) 27.4 MB
ENCFF657IJB.bigWig bigWig (plus strand signal of unique reads) 82.3 MB
ENCFF664UCL.tsv tsv (gene quantifications) 9.5 MB
ENCFF674VOE.bigWig bigWig (minus strand signal of unique reads) 80.0 MB
ENCFF689VEX.bam bam (transcriptome alignments) 4.6 GB
ENCFF708SZB.bigWig bigWig (plus strand signal of unique reads) 82.1 MB
ENCFF720OKF.bigWig bigWig (plus strand signal of unique reads) 76.9 MB
ENCFF722ZPW.bam bam (transcriptome alignments) 4.5 GB
ENCFF728CHG.tsv tsv (transcript quantifications) 29.8 MB
ENCFF738SGB.tsv tsv (transcript quantifications) 25.3 MB
ENCFF767CVZ.fastq fastq (reads) 2.3 GB
ENCFF791IKZ.bigWig bigWig (minus strand signal of unique reads) 80.3 MB
ENCFF791XKE.fastq fastq (reads) 2.2 GB
ENCFF795VNG.bigWig bigWig (plus strand signal of all reads) 92.0 MB
ENCFF800MRL.bigWig bigWig (minus strand signal of unique reads) 74.7 MB
ENCFF808NND.tsv tsv (transcript quantifications) 24.9 MB
ENCFF808POR.bigWig bigWig (minus strand signal of all reads) 83.0 MB
ENCFF818KUW.tsv tsv (gene quantifications) 9.1 MB
ENCFF822PQU.bigWig bigWig (plus strand signal of all reads) 81.5 MB
ENCFF867KTN.bigWig bigWig (minus strand signal of all reads) 86.2 MB
ENCFF867SVH.bigWig bigWig (minus strand signal of all reads) 98.9 MB
ENCFF880QFB.bigWig bigWig (plus strand signal of all reads) 84.6 MB
ENCFF892SIG.tsv tsv (gene quantifications) 10.4 MB
ENCFF895SDN.tsv tsv (gene quantifications) 9.1 MB
ENCFF901ZJT.bigWig bigWig (minus strand signal of unique reads) 87.2 MB
ENCFF953XDH.bigWig bigWig (minus strand signal of all reads) 98.8 MB
ENCFF957JFM.bam bam (alignments) 4.2 GB
ENCFF966WGJ.tsv tsv (transcript quantifications) 27.3 MB
ENCFF982OPU.bigWig bigWig (minus strand signal of all reads) 92.0 MB
ENCFF984PEH.bigWig bigWig (plus strand signal of unique reads) 82.4 MB
ENCSR023UHL ENCSR · via encode_api

eCLIP experiment on HepG2 against FASTKD2

Homo sapiens

34 data files
FileTypeSize
ENCFF024HPG.bigBed bigBed (peaks); assembly: hg19 1.2 MB
ENCFF064QSN.bam bam (alignments); assembly: GRCh38 571.3 MB
ENCFF092YPS.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 25.1 MB
ENCFF114NAX.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 15.6 MB
ENCFF121OYK.bam bam (alignments); assembly: hg19 368.2 MB
ENCFF124DCX.bed bed (peaks); assembly: hg19 651.8 KB
ENCFF125BSO.bed bed (peaks); assembly: GRCh38 334.4 KB
ENCFF128ROY.fastq fastq (reads) 422.2 MB
ENCFF128XPI.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 15.3 MB
ENCFF132EGC.bigBed bigBed (peaks); assembly: GRCh38 809.3 KB
ENCFF136QLO.bed bed (peaks); assembly: hg19 1.6 MB
ENCFF142KYH.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 16.0 MB
ENCFF173TLB.bed bed (peaks); assembly: hg19 1.1 MB
ENCFF177RJW.bed bed (peaks); assembly: GRCh38 2.4 MB
ENCFF265RIO.bed bed (peaks); assembly: hg19 20.3 KB
ENCFF294NMK.bigBed bigBed (peaks); assembly: hg19 2.2 MB
ENCFF307ZHU.bam bam (alignments); assembly: GRCh38 348.5 MB
ENCFF465QMA.bigBed bigBed (peaks); assembly: hg19 4.7 MB
ENCFF472XVF.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 24.6 MB
ENCFF479YXW.bigBed bigBed (peaks); assembly: GRCh38 482.2 KB
ENCFF498IGK.bed bed (peaks); assembly: GRCh38 20.4 KB
ENCFF503DBN.bed bed (peaks); assembly: hg19 2.4 MB
ENCFF528QYR.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 24.0 MB
ENCFF530DLQ.bigBed bigBed (peaks); assembly: GRCh38 4.7 MB
ENCFF540UVX.fastq fastq (reads) 665.8 MB
ENCFF557GSC.bed bed (peaks); assembly: GRCh38 200.5 KB
ENCFF728SIS.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 24.5 MB
ENCFF761ZXY.fastq fastq (reads) 426.4 MB
ENCFF776JXK.bigBed bigBed (peaks); assembly: GRCh38 3.1 MB
ENCFF828HJF.bed bed (peaks); assembly: GRCh38 1.5 MB
ENCFF845FUE.bigBed bigBed (peaks); assembly: hg19 3.2 MB
ENCFF891HJO.fastq fastq (reads) 647.7 MB
ENCFF903QKL.bam bam (alignments); assembly: hg19 591.9 MB
ENCFF967TLU.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 16.4 MB
ENCSR318OXM ENCSR · via encode_api

shRNA knockdown against UPF2 in HepG2 cells followed by RNA-seq. (UPF2_BGHLV17)

Homo sapiens

97 data files
FileTypeSize
ENCFF010WKA.bigWig bigWig (minus strand signal of unique reads) 59.7 MB
ENCFF012NYF.fastq fastq (reads) 739.2 MB
ENCFF023KBS.bam bam (alignments) 3.3 GB
ENCFF027YGC.bigWig bigWig (minus strand signal of unique reads) 57.5 MB
ENCFF031ACG.tsv tsv (differential expression quantifications) 4.3 MB
ENCFF043IDI.bigWig bigWig (minus strand signal of all reads) 97.1 MB
ENCFF058GGQ.tsv tsv (gene quantifications) 10.4 MB
ENCFF059TGP.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF085AZU.fastq fastq (reads) 720.8 MB
ENCFF085MWX.bigWig bigWig (plus strand signal of unique reads) 33.4 MB
ENCFF092NCD.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF098ZWS.bigWig bigWig (plus strand signal of all reads) 97.9 MB
ENCFF111MGU.bigWig bigWig (plus strand signal of all reads) 60.3 MB
ENCFF127ARW.tar tar (differential splicing quantifications) 3.3 MB
ENCFF158PTQ.tsv tsv (transcript quantifications) 27.3 MB
ENCFF163BAQ.fastq fastq (reads) 2.3 GB
ENCFF228LGU.tsv tsv (transcript quantifications) 24.9 MB
ENCFF231HVG.bigWig bigWig (plus strand signal of unique reads) 93.8 MB
ENCFF236RAO.bigWig bigWig (plus strand signal of all reads) 68.5 MB
ENCFF243ZQC.fastq fastq (reads) 1.8 GB
ENCFF264QBP.bigWig bigWig (minus strand signal of all reads) 61.2 MB
ENCFF271UXZ.tar tar (differential splicing quantifications) 3.9 MB
ENCFF275JMR.bam bam (alignments) 1.4 GB
ENCFF290SFZ.tsv tsv (gene quantifications) 9.4 MB
ENCFF302TEW.bam bam (transcriptome alignments) 6.8 GB
ENCFF328GWN.bigWig bigWig (plus strand signal of unique reads) 62.3 MB
ENCFF330KJU.bigWig bigWig (minus strand signal of unique reads) 94.5 MB
ENCFF334NRZ.bam bam (alignments) 1.1 GB
ENCFF338HCS.bigWig bigWig (minus strand signal of all reads) 104.4 MB
ENCFF354IJI.bigWig bigWig (minus strand signal of all reads) 103.5 MB
ENCFF355DMA.tsv tsv (transcript quantifications) 25.3 MB
ENCFF357EBB.tsv tsv (transcript quantifications) 29.8 MB
ENCFF357YAB.bigWig bigWig (plus strand signal of all reads) 105.9 MB
ENCFF388QWT.bigWig bigWig (plus strand signal of unique reads) 97.8 MB
ENCFF391WCI.bam bam (alignments) 1.2 GB
ENCFF395KFY.bigWig bigWig (minus strand signal of all reads) 34.9 MB
ENCFF398ZRP.tsv tsv (gene quantifications) 9.4 MB
ENCFF407KYV.bigWig bigWig (plus strand signal of all reads) 99.7 MB
ENCFF422AYH.bam bam (transcriptome alignments) 6.7 GB
ENCFF438UCN.tsv tsv (gene quantifications) 9.1 MB
ENCFF445GZB.bam bam (transcriptome alignments) 1.6 GB
ENCFF468JAB.bigWig bigWig (plus strand signal of unique reads) 97.6 MB
ENCFF471CWT.bigWig bigWig (minus strand signal of unique reads) 32.2 MB
ENCFF479KQD.bigWig bigWig (plus strand signal of unique reads) 59.5 MB
ENCFF484GNP.bam bam (alignments) 2.8 GB
ENCFF518WYV.bam bam (alignments) 2.8 GB
ENCFF519QFO.bigWig bigWig (minus strand signal of all reads) 95.3 MB
ENCFF535KHP.bigWig bigWig (plus strand signal of all reads) 62.2 MB
ENCFF539YFF.bam bam (alignments) 3.4 GB
ENCFF541JLX.bam bam (alignments) 4.4 GB
ENCFF548ORB.bigWig bigWig (plus strand signal of unique reads) 61.9 MB
ENCFF549WSE.tsv tsv (differential expression quantifications) 5.5 MB
ENCFF553OFL.bigWig bigWig (plus strand signal of all reads) 107.1 MB
ENCFF557ARN.bigWig bigWig (minus strand signal of unique reads) 94.3 MB
ENCFF557DDQ.bigWig bigWig (plus strand signal of all reads) 68.5 MB
ENCFF561OHF.tsv tsv (gene quantifications) 10.4 MB
ENCFF567JTH.bigWig bigWig (minus strand signal of unique reads) 91.3 MB
ENCFF571XCA.bigWig bigWig (plus strand signal of all reads) 107.1 MB
ENCFF578YZK.bam bam (alignments) 2.8 GB
ENCFF580AMF.bigWig bigWig (minus strand signal of unique reads) 60.3 MB
ENCFF597JFB.bigWig bigWig (plus strand signal of all reads) 35.9 MB
ENCFF603GEN.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF611RWV.tsv tsv (transcript quantifications) 25.3 MB
ENCFF615EBE.bigWig bigWig (minus strand signal of unique reads) 59.9 MB
ENCFF629LWN.bigWig bigWig (minus strand signal of all reads) 60.6 MB
ENCFF648BTY.bam bam (alignments) 4.6 GB
ENCFF650VRO.bigWig bigWig (minus strand signal of unique reads) 55.2 MB
ENCFF654EEC.bam bam (transcriptome alignments) 7.7 GB
ENCFF665MNE.bigWig bigWig (plus strand signal of all reads) 67.8 MB
ENCFF665SXL.bigWig bigWig (minus strand signal of all reads) 66.8 MB
ENCFF674YWJ.fastq fastq (reads) 1.9 GB
ENCFF686VXI.bam bam (alignments) 5.6 GB
ENCFF687OPB.tsv tsv (transcript quantifications) 24.9 MB
ENCFF693ZLZ.fastq fastq (reads) 2.2 GB
ENCFF704CDP.bigWig bigWig (plus strand signal of unique reads) 94.5 MB
ENCFF709UWZ.bam bam (transcriptome alignments) 4.3 GB
ENCFF723AKX.bigWig bigWig (minus strand signal of all reads) 66.7 MB
ENCFF727EQB.bam bam (alignments) 3.4 GB
ENCFF737IEW.bam bam (alignments) 5.3 GB
ENCFF766POR.tsv tsv (transcript quantifications) 27.4 MB
ENCFF791BXM.bigWig bigWig (minus strand signal of all reads) 58.6 MB
ENCFF807WUR.bigWig bigWig (minus strand signal of unique reads) 95.5 MB
ENCFF808LDU.bigWig bigWig (minus strand signal of unique reads) 90.7 MB
ENCFF816ZAN.bigWig bigWig (minus strand signal of unique reads) 57.3 MB
ENCFF837WZM.bigWig bigWig (minus strand signal of all reads) 104.3 MB
ENCFF843TPS.bigWig bigWig (plus strand signal of unique reads) 61.7 MB
ENCFF857OVU.tsv tsv (gene quantifications) 9.1 MB
ENCFF873SLV.bigWig bigWig (plus strand signal of unique reads) 59.1 MB
ENCFF875KMO.bam bam (transcriptome alignments) 4.9 GB
ENCFF882ZSU.bigWig bigWig (plus strand signal of unique reads) 57.3 MB
ENCFF893ZHX.bam bam (alignments) 5.6 GB
ENCFF900RDD.tsv tsv (transcript quantifications) 29.8 MB
ENCFF949FCS.bigWig bigWig (plus strand signal of all reads) 62.9 MB
ENCFF949XQD.tar tar (differential splicing quantifications) 15.8 MB
ENCFF951FSU.bigWig bigWig (plus strand signal of unique reads) 98.9 MB
ENCFF961MYL.bam bam (transcriptome alignments) 4.3 GB
ENCFF971ABK.bigWig bigWig (minus strand signal of all reads) 66.3 MB
ENCSR840DRD ENCSR · via encode_api

eCLIP experiment on K562 against CSTF2T

Homo sapiens

36 data files
FileTypeSize
ENCFF042JPC.bigWig bigWig (minus strand signal of unique reads) 22.1 MB
ENCFF043QXI.bed bed (peaks) 1.7 MB
ENCFF050YWD.bed bed (peaks) 1.8 MB
ENCFF051MKE.bed bed (peaks) 284.6 KB
ENCFF072FRJ.bigBed bigBed (peaks) 4.5 MB
ENCFF078LTR.bigWig bigWig (minus strand signal of unique reads) 31.7 MB
ENCFF084JPG.bigWig bigWig (plus strand signal of unique reads) 33.3 MB
ENCFF084WXF.fastq fastq (reads) 485.1 MB
ENCFF106RNO.bam bam (alignments) 444.7 MB
ENCFF106ZUH.bigWig bigWig (minus strand signal of unique reads) 31.6 MB
ENCFF157RJC.bed bed (peaks) 775.7 KB
ENCFF251DNT.fastq fastq (reads) 315.8 MB
ENCFF305FQD.fastq fastq (reads) 299.6 MB
ENCFF321IFP.bed bed (peaks) 622.8 KB
ENCFF330WYG.bigWig bigWig (plus strand signal of unique reads) 23.3 MB
ENCFF370JHA.bigBed bigBed (peaks) 4.5 MB
ENCFF374VAF.bigBed bigBed (peaks) 606.6 KB
ENCFF379UQU.bed bed (peaks) 2.4 MB
ENCFF449NFO.bigWig bigWig (plus strand signal of unique reads) 23.2 MB
ENCFF471LMN.bigWig bigWig (plus strand signal of unique reads) 33.5 MB
ENCFF477YRW.bigWig bigWig (minus strand signal of unique reads) 21.9 MB
ENCFF480LCY.fastq fastq (reads) 460.1 MB
ENCFF513VDW.bam bam (alignments) 663.5 MB
ENCFF536BUW.bed bed (peaks) 231.4 KB
ENCFF633SFR.bed bed (peaks) 226.9 KB
ENCFF647ZVB.bed bed (peaks) 2.5 MB
ENCFF706DYJ.bigBed bigBed (peaks) 2.1 MB
ENCFF708YRH.bigBed bigBed (peaks) 3.4 MB
ENCFF721WXJ.bigBed bigBed (peaks) 1.6 MB
ENCFF775WUQ.bigBed bigBed (peaks) 3.4 MB
ENCFF777EUD.bigBed bigBed (peaks) 702.2 KB
ENCFF821WEB.bigBed bigBed (peaks) 2.9 MB
ENCFF859CZM.bam bam (alignments) 440.0 MB
ENCFF878VVA.bed bed (peaks) 233.2 KB
ENCFF910OVO.bigBed bigBed (peaks) 1.3 MB
ENCFF926RLW.bam bam (alignments) 670.2 MB
ENCSR269AJF ENCSR · via encode_api

eCLIP experiment on K562 against RPS11

Homo sapiens

36 data files
FileTypeSize
ENCFF005DWR.fastq fastq (reads) 460.4 MB
ENCFF062WUD.bed bed (peaks) 218.4 KB
ENCFF130YDY.bigWig bigWig (minus strand signal of unique reads) 3.5 MB
ENCFF142OTS.bigWig bigWig (plus strand signal of unique reads) 3.6 MB
ENCFF250NQE.bigBed bigBed (peaks) 338.7 KB
ENCFF268WIE.fastq fastq (reads) 455.5 MB
ENCFF281BTP.bed bed (peaks) 177.6 KB
ENCFF313WDF.bed bed (peaks) 1.3 KB
ENCFF315BEA.bigBed bigBed (peaks) 202.7 KB
ENCFF376NMQ.bigWig bigWig (minus strand signal of unique reads) 3.4 MB
ENCFF390SSK.bigBed bigBed (peaks) 370.7 KB
ENCFF430NNZ.bam bam (alignments) 46.9 MB
ENCFF449AWG.fastq fastq (reads) 479.0 MB
ENCFF463FQZ.fastq fastq (reads) 489.9 MB
ENCFF473UEH.bed bed (peaks) 122.7 KB
ENCFF529LLH.bigBed bigBed (peaks) 496.7 KB
ENCFF553LIK.bigBed bigBed (peaks) 436.2 KB
ENCFF589AXV.bigBed bigBed (peaks) 783.4 KB
ENCFF606CVG.bed bed (peaks) 136.3 KB
ENCFF646GUE.bam bam (alignments) 44.4 MB
ENCFF650CMA.bed bed (peaks) 210.3 KB
ENCFF661HIT.bed bed (peaks) 143.4 KB
ENCFF676SJK.bigWig bigWig (plus strand signal of unique reads) 2.9 MB
ENCFF681CLC.bam bam (alignments) 60.9 MB
ENCFF682ZPF.bed bed (peaks) 69.4 KB
ENCFF696XRM.bigWig bigWig (plus strand signal of unique reads) 3.7 MB
ENCFF744FMW.bigWig bigWig (plus strand signal of unique reads) 3.0 MB
ENCFF750TDL.bigWig bigWig (minus strand signal of unique reads) 2.8 MB
ENCFF803GSP.bed bed (peaks) 880.0 B
ENCFF893JWN.bigBed bigBed (peaks) 482.8 KB
ENCFF895LMB.bed bed (peaks) 52.0 KB
ENCFF896PKL.bam bam (alignments) 58.6 MB
ENCFF920RVJ.bigWig bigWig (minus strand signal of unique reads) 2.9 MB
ENCFF972BYJ.bigBed bigBed (peaks) 241.0 KB
ENCFF980TVG.bigBed bigBed (peaks) 356.3 KB
ENCFF990UDM.bigBed bigBed (peaks) 579.7 KB
ENCSR970NKP ENCSR · via encode_api

eCLIP experiment on K562 against Lin28B

Homo sapiens

36 data files
FileTypeSize
ENCFF016VJL.bigWig bigWig (plus strand signal of unique reads) 13.2 MB
ENCFF061XNA.bed bed (peaks) 160.2 KB
ENCFF068KXE.bam bam (alignments) 300.0 MB
ENCFF103UQK.bam bam (alignments) 295.5 MB
ENCFF110KUU.fastq fastq (reads) 324.7 MB
ENCFF134BOJ.bam bam (alignments) 228.8 MB
ENCFF153RAR.bigBed bigBed (peaks) 2.3 MB
ENCFF154GTK.bigBed bigBed (peaks) 3.8 MB
ENCFF156IAN.bigBed bigBed (peaks) 878.4 KB
ENCFF296IQP.bigBed bigBed (peaks) 1.6 MB
ENCFF368HIO.bigBed bigBed (peaks) 2.4 MB
ENCFF379BLS.bigBed bigBed (peaks) 852.9 KB
ENCFF392ANV.bigBed bigBed (peaks) 2.0 MB
ENCFF393PAO.bed bed (peaks) 427.2 KB
ENCFF394QPB.bigWig bigWig (minus strand signal of unique reads) 15.9 MB
ENCFF400LMM.bed bed (peaks) 1.4 MB
ENCFF430TNL.bigWig bigWig (plus strand signal of unique reads) 16.4 MB
ENCFF455ZCD.bed bed (peaks) 403.2 KB
ENCFF492GWE.bam bam (alignments) 231.2 MB
ENCFF493GWT.bigWig bigWig (minus strand signal of unique reads) 13.0 MB
ENCFF514PTU.bigBed bigBed (peaks) 2.0 MB
ENCFF540UOQ.bed bed (peaks) 157.3 KB
ENCFF557FKM.fastq fastq (reads) 261.4 MB
ENCFF594JCF.fastq fastq (reads) 375.2 MB
ENCFF659JYK.bigWig bigWig (minus strand signal of unique reads) 12.9 MB
ENCFF784MYP.bed bed (peaks) 915.3 KB
ENCFF819TBQ.bigBed bigBed (peaks) 1.5 MB
ENCFF823UGV.bed bed (peaks) 1.1 MB
ENCFF823WIW.bed bed (peaks) 1.4 MB
ENCFF857JIT.bigWig bigWig (plus strand signal of unique reads) 13.4 MB
ENCFF892DVI.bed bed (peaks) 1.2 MB
ENCFF923RDJ.bigBed bigBed (peaks) 3.7 MB
ENCFF934ZVJ.bed bed (peaks) 859.7 KB
ENCFF946QER.bigWig bigWig (plus strand signal of unique reads) 16.2 MB
ENCFF954UYJ.bigWig bigWig (minus strand signal of unique reads) 15.7 MB
ENCFF961JRQ.fastq fastq (reads) 233.3 MB
ENCSR623VEQ ENCSR · via encode_api

eCLIP experiment on HepG2 against TIA1

Homo sapiens

36 data files
FileTypeSize
ENCFF055IIM.bed bed (peaks) 1.8 MB
ENCFF103OSX.bed bed (peaks) 329.2 KB
ENCFF159BSL.bigBed bigBed (peaks) 2.8 MB
ENCFF181GFC.fastq fastq (reads) 290.1 MB
ENCFF236GOG.bigBed bigBed (peaks) 701.3 KB
ENCFF251QBU.bigBed bigBed (peaks) 2.7 MB
ENCFF258DPQ.bam bam (alignments) 336.4 MB
ENCFF299TLW.bed bed (peaks) 600.2 KB
ENCFF306MBI.bigWig bigWig (plus strand signal of unique reads) 19.0 MB
ENCFF323DFS.bigBed bigBed (peaks) 3.6 MB
ENCFF354DYL.bed bed (peaks) 240.5 KB
ENCFF354GBY.bigBed bigBed (peaks) 561.8 KB
ENCFF358SGV.bed bed (peaks) 2.4 MB
ENCFF378HWC.bed bed (peaks) 2.4 MB
ENCFF482SRR.fastq fastq (reads) 240.5 MB
ENCFF485LRS.bam bam (alignments) 436.2 MB
ENCFF494TGK.bigWig bigWig (plus strand signal of unique reads) 23.0 MB
ENCFF506BUC.fastq fastq (reads) 242.8 MB
ENCFF562ANK.bigWig bigWig (minus strand signal of unique reads) 22.3 MB
ENCFF565TYN.bigBed bigBed (peaks) 1.3 MB
ENCFF573VNX.bigWig bigWig (minus strand signal of unique reads) 18.4 MB
ENCFF640DDA.bed bed (peaks) 39.5 KB
ENCFF643ZXH.fastq fastq (reads) 293.4 MB
ENCFF649UEJ.bigBed bigBed (peaks) 2.9 MB
ENCFF681JJG.bam bam (alignments) 437.1 MB
ENCFF759KCD.bed bed (peaks) 40.4 KB
ENCFF784SLC.bigBed bigBed (peaks) 3.5 MB
ENCFF797HXR.bigWig bigWig (plus strand signal of unique reads) 18.8 MB
ENCFF816ERM.bigBed bigBed (peaks) 2.4 MB
ENCFF834TYG.bigBed bigBed (peaks) 1.1 MB
ENCFF856EHA.bed bed (peaks) 1.8 MB
ENCFF878IQT.bam bam (alignments) 334.9 MB
ENCFF926YVD.bed bed (peaks) 748.7 KB
ENCFF951BGZ.bigWig bigWig (minus strand signal of unique reads) 22.4 MB
ENCFF962KME.bigWig bigWig (minus strand signal of unique reads) 18.0 MB
ENCFF996GFV.bigWig bigWig (plus strand signal of unique reads) 23.1 MB
ENCSR456JJQ ENCSR · via encode_api

eCLIP experiment on HepG2 against RBM22

Homo sapiens

36 data files
FileTypeSize
ENCFF026YRT.bigBed bigBed (peaks) 4.7 MB
ENCFF051SNH.bam bam (alignments) 213.3 MB
ENCFF052LHG.bigBed bigBed (peaks) 4.7 MB
ENCFF073CUN.bed bed (peaks) 827.5 KB
ENCFF101GGU.bigWig bigWig (minus strand signal of unique reads) 22.2 MB
ENCFF104SVF.bigBed bigBed (peaks) 2.2 MB
ENCFF125EJB.fastq fastq (reads) 623.1 MB
ENCFF169EKN.bam bam (alignments) 426.6 MB
ENCFF210HLS.fastq fastq (reads) 653.9 MB
ENCFF244TWH.bed bed (peaks) 585.3 KB
ENCFF247QJS.bigBed bigBed (peaks) 1.1 MB
ENCFF251QAT.bigBed bigBed (peaks) 2.2 MB
ENCFF253ZSN.bed bed (peaks) 2.4 MB
ENCFF270GPK.bed bed (peaks) 285.7 KB
ENCFF274HEE.bigWig bigWig (minus strand signal of unique reads) 22.8 MB
ENCFF293IZG.bed bed (peaks) 39.7 KB
ENCFF309YVW.bigBed bigBed (peaks) 2.9 MB
ENCFF312KCQ.bigBed bigBed (peaks) 1.8 MB
ENCFF353XWS.bed bed (peaks) 2.4 MB
ENCFF389OWY.bed bed (peaks) 204.3 KB
ENCFF433TMO.fastq fastq (reads) 959.8 MB
ENCFF445KXO.bigBed bigBed (peaks) 512.6 KB
ENCFF474WPV.bigWig bigWig (minus strand signal of unique reads) 12.5 MB
ENCFF479BEK.bigWig bigWig (plus strand signal of unique reads) 23.1 MB
ENCFF538RDD.bigWig bigWig (plus strand signal of unique reads) 12.9 MB
ENCFF545NBF.bed bed (peaks) 1.3 MB
ENCFF648ZQM.bigWig bigWig (minus strand signal of unique reads) 12.9 MB
ENCFF743SKO.bam bam (alignments) 442.5 MB
ENCFF755XIB.bam bam (alignments) 224.3 MB
ENCFF790SNY.bigBed bigBed (peaks) 636.2 KB
ENCFF812GPZ.bigWig bigWig (plus strand signal of unique reads) 23.7 MB
ENCFF827TLD.fastq fastq (reads) 917.9 MB
ENCFF933AGU.bed bed (peaks) 39.5 KB
ENCFF983BUY.bigBed bigBed (peaks) 2.2 MB
ENCFF990FKM.bigWig bigWig (plus strand signal of unique reads) 13.3 MB
ENCFF990UNN.bed bed (peaks) 1.3 MB
ENCSR774RFN ENCSR · via encode_api

eCLIP experiment on K562 against FXR1

Homo sapiens

36 data files
FileTypeSize
ENCFF004KTT.fastq fastq (reads) 366.2 MB
ENCFF070XXP.bam bam (alignments) 341.5 MB
ENCFF089JTT.bigWig bigWig (minus strand signal of unique reads) 19.4 MB
ENCFF122DCP.bigWig bigWig (plus strand signal of unique reads) 18.4 MB
ENCFF139NTN.bigBed bigBed (peaks) 4.2 MB
ENCFF148WUD.bigWig bigWig (minus strand signal of unique reads) 18.0 MB
ENCFF149LXR.bigWig bigWig (plus strand signal of unique reads) 19.8 MB
ENCFF191BRO.fastq fastq (reads) 501.8 MB
ENCFF196IUS.bigBed bigBed (peaks) 635.7 KB
ENCFF205KCE.fastq fastq (reads) 433.1 MB
ENCFF279FKC.bigWig bigWig (plus strand signal of unique reads) 20.1 MB
ENCFF310NDD.bed bed (peaks) 30.7 KB
ENCFF352KYI.bed bed (peaks) 1.5 MB
ENCFF366UJP.bed bed (peaks) 32.1 KB
ENCFF405KWZ.bigBed bigBed (peaks) 2.7 MB
ENCFF464GTB.bed bed (peaks) 1.7 MB
ENCFF573XYN.bed bed (peaks) 1013.7 KB
ENCFF678MSG.bed bed (peaks) 1.5 MB
ENCFF690BKB.bed bed (peaks) 640.5 KB
ENCFF690NJZ.bigBed bigBed (peaks) 2.3 MB
ENCFF704PUC.bed bed (peaks) 1.7 MB
ENCFF716VUM.bam bam (alignments) 407.7 MB
ENCFF738GHM.bigWig bigWig (plus strand signal of unique reads) 18.4 MB
ENCFF784HKJ.bigBed bigBed (peaks) 2.7 MB
ENCFF788NXJ.bed bed (peaks) 305.9 KB
ENCFF830ZKB.bam bam (alignments) 400.4 MB
ENCFF860ALU.bigBed bigBed (peaks) 1.1 MB
ENCFF863OFF.bed bed (peaks) 185.4 KB
ENCFF896JWA.bigBed bigBed (peaks) 445.3 KB
ENCFF915SJY.bigWig bigWig (minus strand signal of unique reads) 17.9 MB
ENCFF918MNJ.bigBed bigBed (peaks) 2.0 MB
ENCFF934VOI.bigWig bigWig (minus strand signal of unique reads) 19.7 MB
ENCFF935NXO.bigBed bigBed (peaks) 2.3 MB
ENCFF949QUY.bam bam (alignments) 339.8 MB
ENCFF953NDG.bigBed bigBed (peaks) 2.5 MB
ENCFF956CKP.fastq fastq (reads) 580.8 MB
ENCSR483NOP ENCSR · via encode_api

eCLIP experiment on K562 against SLBP

Homo sapiens

36 data files
FileTypeSize
ENCFF013SZJ.bam bam (alignments); assembly: hg19 35.7 MB
ENCFF036FAN.bam bam (alignments); assembly: hg19 13.2 MB
ENCFF060VZB.bigBed bigBed (peaks); assembly: GRCh38 333.7 KB
ENCFF086ZSG.bigBed bigBed (peaks); assembly: hg19 332.8 KB
ENCFF121TWZ.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 894.2 KB
ENCFF127WAK.bed bed (peaks); assembly: GRCh38 142.5 KB
ENCFF138MEW.bed bed (peaks); assembly: GRCh38 70.3 KB
ENCFF192LYD.fastq fastq (reads) 172.4 MB
ENCFF218ZEI.bam bam (alignments); assembly: GRCh38 35.4 MB
ENCFF274ZJK.bigBed bigBed (peaks); assembly: GRCh38 228.1 KB
ENCFF307CYA.bigBed bigBed (peaks); assembly: GRCh38 185.7 KB
ENCFF326UZQ.bed bed (peaks); assembly: hg19 128.1 KB
ENCFF362GBA.bed bed (peaks); assembly: hg19 103.5 KB
ENCFF397VAA.bed bed (peaks); assembly: hg19 104.9 KB
ENCFF403PZD.bigBed bigBed (peaks); assembly: hg19 313.4 KB
ENCFF426SBA.bigBed bigBed (peaks); assembly: hg19 225.5 KB
ENCFF456CGG.bed bed (peaks); assembly: hg19 3.7 KB
ENCFF468AMY.bigBed bigBed (peaks); assembly: GRCh38 180.7 KB
ENCFF511HSJ.bam bam (alignments); assembly: GRCh38 13.1 MB
ENCFF546UYO.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 935.0 KB
ENCFF568ULF.bigBed bigBed (peaks); assembly: hg19 599.9 KB
ENCFF613ACW.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 1.9 MB
ENCFF623WGE.bed bed (peaks); assembly: GRCh38 3.8 KB
ENCFF635FOV.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 898.0 KB
ENCFF683EWG.bed bed (peaks); assembly: GRCh38 104.1 KB
ENCFF717RDH.bigBed bigBed (peaks); assembly: hg19 742.4 KB
ENCFF791FVU.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 1.8 MB
ENCFF816TIW.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 939.6 KB
ENCFF822CCR.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 1.9 MB
ENCFF833YXA.fastq fastq (reads) 244.2 MB
ENCFF835QFU.fastq fastq (reads) 235.1 MB
ENCFF845LMZ.bigBed bigBed (peaks); assembly: hg19 228.7 KB
ENCFF874WRG.bed bed (peaks); assembly: hg19 142.1 KB
ENCFF929QLP.fastq fastq (reads) 181.1 MB
ENCFF957MKS.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 1.8 MB
ENCFF962ESE.bed bed (peaks); assembly: GRCh38 73.5 KB
ENCSR867ZVK ENCSR · via encode_api

eCLIP experiment on K562 against YWHAG

Homo sapiens

35 data files
FileTypeSize
ENCFF010GZO.fastq fastq (reads) 313.9 MB
ENCFF052ORJ.bam bam (alignments); assembly: GRCh38 163.5 MB
ENCFF094MHA.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 12.2 MB
ENCFF103TFM.bed bed (peaks); assembly: GRCh38 600.7 KB
ENCFF103UKJ.bigBed bigBed (peaks); assembly: hg19 643.1 KB
ENCFF121YJC.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 8.3 MB
ENCFF145AKE.bed bed (peaks); assembly: GRCh38 97.1 KB
ENCFF186FHG.bam bam (alignments); assembly: GRCh38 198.3 MB
ENCFF240CRZ.bed bed (peaks); assembly: hg19 772.3 KB
ENCFF333OBK.bigBed bigBed (peaks); assembly: hg19 745.5 KB
ENCFF352NIP.bam bam (alignments); assembly: hg19 172.6 MB
ENCFF363FKB.bed bed (peaks); assembly: hg19 16.0 KB
ENCFF409XTN.bigBed bigBed (peaks); assembly: hg19 1.3 MB
ENCFF437YRG.bigBed bigBed (peaks); assembly: hg19 1.1 MB
ENCFF463WLQ.bam bam (alignments); assembly: hg19 207.1 MB
ENCFF467LHB.bed bed (peaks); assembly: hg19 627.1 KB
ENCFF471XES.bed bed (peaks); assembly: GRCh38 120.2 KB
ENCFF482OIF.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 12.9 MB
ENCFF494UNP.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 9.6 MB
ENCFF498FKK.fastq fastq (reads) 340.5 MB
ENCFF501DYC.bigBed bigBed (peaks); assembly: GRCh38 1.1 MB
ENCFF513RST.bigBed bigBed (peaks); assembly: GRCh38 258.5 KB
ENCFF552DLY.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 8.6 MB
ENCFF692DGH.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 8.8 MB
ENCFF702HCG.bigBed bigBed (peaks); assembly: hg19 1.2 MB
ENCFF708WRS.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 8.5 MB
ENCFF741UNZ.bed bed (peaks); assembly: GRCh38 751.7 KB
ENCFF780LKE.bigBed bigBed (peaks); assembly: GRCh38 1.3 MB
ENCFF792BRM.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 12.5 MB
ENCFF803FES.fastq fastq (reads) 319.2 MB
ENCFF806BND.bed bed (peaks); assembly: hg19 356.5 KB
ENCFF878CHN.bigBed bigBed (peaks); assembly: GRCh38 291.5 KB
ENCFF898QZA.bed bed (peaks); assembly: hg19 289.5 KB
ENCFF932UXC.bed bed (peaks); assembly: GRCh38 16.2 KB
ENCFF973PMP.fastq fastq (reads) 360.5 MB
ENCSR240MVJ ENCSR · via encode_api

eCLIP experiment on HepG2 against HNRNPU

Homo sapiens

36 data files
FileTypeSize
ENCFF021JPD.bigBed bigBed (peaks); assembly: GRCh38 5.3 MB
ENCFF024FCB.bed bed (peaks); assembly: hg19 2.8 MB
ENCFF039XQD.bed bed (peaks); assembly: GRCh38 7.2 KB
ENCFF040QAV.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 29.2 MB
ENCFF053XYY.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 30.3 MB
ENCFF095IVK.bigBed bigBed (peaks); assembly: GRCh38 5.2 MB
ENCFF125EPG.bam bam (alignments); assembly: GRCh38 535.2 MB
ENCFF195JRZ.fastq fastq (reads) 308.9 MB
ENCFF247GMX.bigBed bigBed (peaks); assembly: hg19 1.6 MB
ENCFF322ERU.bigBed bigBed (peaks); assembly: hg19 793.6 KB
ENCFF323IDR.bam bam (alignments); assembly: hg19 539.5 MB
ENCFF335HFQ.bed bed (peaks); assembly: GRCh38 135.7 KB
ENCFF382XRS.bed bed (peaks); assembly: GRCh38 2.9 MB
ENCFF383SFO.fastq fastq (reads) 352.3 MB
ENCFF388FMF.bed bed (peaks); assembly: hg19 404.0 KB
ENCFF399JKS.bigBed bigBed (peaks); assembly: GRCh38 361.2 KB
ENCFF441KDR.bigBed bigBed (peaks); assembly: GRCh38 372.9 KB
ENCFF568MGU.bigBed bigBed (peaks); assembly: hg19 5.1 MB
ENCFF587FNW.bed bed (peaks); assembly: hg19 2.8 MB
ENCFF587PLY.bam bam (alignments); assembly: GRCh38 556.7 MB
ENCFF600ZSJ.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 28.8 MB
ENCFF621JPQ.bed bed (peaks); assembly: GRCh38 2.8 MB
ENCFF624CVO.bigBed bigBed (peaks); assembly: hg19 1.6 MB
ENCFF654KQE.bed bed (peaks); assembly: hg19 393.9 KB
ENCFF677NVJ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 30.3 MB
ENCFF729IOJ.bigBed bigBed (peaks); assembly: hg19 811.0 KB
ENCFF739PWI.fastq fastq (reads) 388.5 MB
ENCFF751WTI.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 28.9 MB
ENCFF854NXI.bed bed (peaks); assembly: hg19 6.7 KB
ENCFF861LOK.bigBed bigBed (peaks); assembly: hg19 5.2 MB
ENCFF907BAD.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 29.4 MB
ENCFF937XOB.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 30.4 MB
ENCFF942SSU.fastq fastq (reads) 320.0 MB
ENCFF957ECH.bed bed (peaks); assembly: GRCh38 142.1 KB
ENCFF958UYK.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 30.5 MB
ENCFF979DWE.bam bam (alignments); assembly: hg19 551.0 MB
ENCSR194HZU ENCSR · via encode_api

eCLIP experiment on HepG2 against NOLC1

Homo sapiens

29 data files
FileTypeSize
ENCFF041WQX.bigBed bigBed (peaks); assembly: hg19 469.4 KB
ENCFF087PHE.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 6.1 MB
ENCFF091OGJ.fastq fastq (reads) 649.4 MB
ENCFF102DLV.bam bam (alignments); assembly: hg19 184.4 MB
ENCFF127EDI.bed bed (peaks); assembly: hg19 179.8 KB
ENCFF137YFD.bed bed (peaks); assembly: GRCh38 33.1 KB
ENCFF161CIM.fastq fastq (reads) 675.7 MB
ENCFF253RLM.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 6.2 MB
ENCFF297FNV.bigBed bigBed (peaks); assembly: GRCh38 905.5 KB
ENCFF329FPZ.bam bam (alignments); assembly: GRCh38 132.6 MB
ENCFF405PYI.bam bam (alignments); assembly: GRCh38 175.3 MB
ENCFF414HCO.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 2.4 MB
ENCFF537BAJ.fastq fastq (reads) 610.6 MB
ENCFF560WXZ.bed bed (peaks); assembly: GRCh38 586.3 KB
ENCFF583EBP.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 4.2 MB
ENCFF633BUL.bed bed (peaks); assembly: hg19 605.5 KB
ENCFF645PLG.bed bed (peaks); assembly: GRCh38 411.4 KB
ENCFF656UJI.fastq fastq (reads) 583.3 MB
ENCFF688RLF.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 2.4 MB
ENCFF688VND.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 6.3 MB
ENCFF771XSZ.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 4.3 MB
ENCFF805JFN.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 6.0 MB
ENCFF840HYK.bam bam (alignments); assembly: hg19 58.4 MB
ENCFF844FIQ.bigBed bigBed (peaks); assembly: GRCh38 1.3 MB
ENCFF845UMK.bigBed bigBed (peaks); assembly: hg19 1.1 MB
ENCFF875VXN.bed bed (peaks); assembly: GRCh38 148.8 KB
ENCFF913QWS.bed bed (peaks); assembly: hg19 187.7 KB
ENCFF944ISN.bed bed (peaks); assembly: hg19 27.3 KB
ENCFF984VKQ.bed bed (peaks); assembly: hg19 419.8 KB
ENCSR365NVO ENCSR · via encode_api

eCLIP experiment on K562 against TRA2A

Homo sapiens

36 data files
FileTypeSize
ENCFF004IIT.bed bed (peaks); assembly: hg19 38.6 KB
ENCFF059GSO.bed bed (peaks); assembly: hg19 778.8 KB
ENCFF059QDI.bam bam (alignments); assembly: hg19 153.5 MB
ENCFF079XEB.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 13.0 MB
ENCFF086AMC.bigBed bigBed (peaks); assembly: GRCh38 2.3 MB
ENCFF116QDH.fastq fastq (reads) 409.8 MB
ENCFF127SBH.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 13.4 MB
ENCFF149BAF.bed bed (peaks); assembly: GRCh38 173.2 KB
ENCFF159MVB.bam bam (alignments); assembly: GRCh38 224.1 MB
ENCFF222FBC.bam bam (alignments); assembly: hg19 226.3 MB
ENCFF249CGM.bigBed bigBed (peaks); assembly: hg19 1.3 MB
ENCFF257VRQ.bed bed (peaks); assembly: hg19 1.1 MB
ENCFF347QRR.bigBed bigBed (peaks); assembly: GRCh38 592.0 KB
ENCFF349CWI.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 7.7 MB
ENCFF349ZAH.fastq fastq (reads) 314.0 MB
ENCFF402AIE.bed bed (peaks); assembly: GRCh38 1.1 MB
ENCFF512DWR.bed bed (peaks); assembly: GRCh38 278.6 KB
ENCFF562FJN.bigBed bigBed (peaks); assembly: hg19 925.8 KB
ENCFF608LUC.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 7.4 MB
ENCFF618ZPP.bed bed (peaks); assembly: GRCh38 732.3 KB
ENCFF658CJG.bigBed bigBed (peaks); assembly: GRCh38 1.3 MB
ENCFF661WET.bigBed bigBed (peaks); assembly: hg19 1.6 MB
ENCFF669QSB.bigBed bigBed (peaks); assembly: hg19 2.3 MB
ENCFF726PFJ.bed bed (peaks); assembly: GRCh38 38.8 KB
ENCFF731SOH.bigBed bigBed (peaks); assembly: hg19 1.8 MB
ENCFF741JAB.bigBed bigBed (peaks); assembly: GRCh38 426.9 KB
ENCFF744EQP.bed bed (peaks); assembly: hg19 728.7 KB
ENCFF795IGM.fastq fastq (reads) 291.6 MB
ENCFF801MSL.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 12.9 MB
ENCFF830EEK.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 13.5 MB
ENCFF846XXE.bam bam (alignments); assembly: GRCh38 151.5 MB
ENCFF901JTH.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 7.4 MB
ENCFF914PEF.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 7.8 MB
ENCFF917GQR.fastq fastq (reads) 382.4 MB
ENCFF955OEB.bed bed (peaks); assembly: hg19 481.9 KB
ENCFF968HCI.bigBed bigBed (peaks); assembly: hg19 3.1 MB
ENCSR921SXC ENCSR · via encode_api

eCLIP experiment on HepG2 against XPO5

Homo sapiens

34 data files
FileTypeSize
ENCFF028MVM.bed bed (peaks); assembly: hg19 1.4 MB
ENCFF032ESQ.bigBed bigBed (peaks); assembly: hg19 3.1 MB
ENCFF039NQM.fastq fastq (reads) 673.6 MB
ENCFF112VQE.bigBed bigBed (peaks); assembly: GRCh38 3.1 MB
ENCFF172XZS.fastq fastq (reads) 604.5 MB
ENCFF207XKP.bam bam (alignments); assembly: GRCh38 285.8 MB
ENCFF327VCE.bed bed (peaks); assembly: GRCh38 96.6 KB
ENCFF332IWJ.bed bed (peaks); assembly: hg19 532.2 KB
ENCFF361YBA.bigBed bigBed (peaks); assembly: hg19 1.0 MB
ENCFF397OKO.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 13.8 MB
ENCFF430YLB.bigBed bigBed (peaks); assembly: hg19 1.0 MB
ENCFF440FET.bed bed (peaks); assembly: hg19 99.6 KB
ENCFF445HUX.bigBed bigBed (peaks); assembly: GRCh38 498.0 KB
ENCFF487LYC.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 14.2 MB
ENCFF519KSH.bed bed (peaks); assembly: GRCh38 202.3 KB
ENCFF581UJN.bam bam (alignments); assembly: hg19 295.2 MB
ENCFF637FLJ.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 14.2 MB
ENCFF647KPG.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 15.2 MB
ENCFF679AXS.bam bam (alignments); assembly: hg19 259.9 MB
ENCFF694HBX.bigBed bigBed (peaks); assembly: hg19 2.9 MB
ENCFF756YND.bed bed (peaks); assembly: hg19 1.5 MB
ENCFF764UJQ.bam bam (alignments); assembly: GRCh38 248.8 MB
ENCFF774XBL.bigBed bigBed (peaks); assembly: GRCh38 2.9 MB
ENCFF801OMV.bed bed (peaks); assembly: GRCh38 1.4 MB
ENCFF804WBU.bed bed (peaks); assembly: hg19 545.3 KB
ENCFF805XCR.bigBed bigBed (peaks); assembly: GRCh38 490.6 KB
ENCFF837ZQD.bed bed (peaks); assembly: GRCh38 195.2 KB
ENCFF865ZYB.fastq fastq (reads) 692.3 MB
ENCFF902TPE.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 13.5 MB
ENCFF927ZQS.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 13.9 MB
ENCFF930GWN.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 14.9 MB
ENCFF957KNE.bed bed (peaks); assembly: GRCh38 1.5 MB
ENCFF979NID.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 14.6 MB
ENCFF989AWZ.fastq fastq (reads) 618.0 MB
ENCSR084SCN ENCSR · via encode_api

Control shRNA against no target in K562 cells followed by RNA-seq. (non-target BGKLV13)

Homo sapiens

84 data files
FileTypeSize
ENCFF020LHX.bigWig bigWig (minus strand signal of unique reads) 51.3 MB
ENCFF044UTY.bigWig bigWig (minus strand signal of unique reads) 58.2 MB
ENCFF048YJT.bigWig bigWig (plus strand signal of unique reads) 58.8 MB
ENCFF049RNQ.tsv tsv (transcript quantifications) 25.2 MB
ENCFF055OEH.bigWig bigWig (minus strand signal of all reads) 92.2 MB
ENCFF058RBW.bam bam (alignments) 2.5 GB
ENCFF070KDQ.bam bam (alignments) 4.3 GB
ENCFF071UNO.bigWig bigWig (plus strand signal of unique reads) 77.7 MB
ENCFF076DNJ.bigWig bigWig (minus strand signal of all reads) 91.0 MB
ENCFF089YBE.bigWig bigWig (minus strand signal of unique reads) 75.9 MB
ENCFF090GRN.bigWig bigWig (plus strand signal of unique reads) 59.5 MB
ENCFF098BEA.bam bam (alignments) 2.1 GB
ENCFF102EFN.bigWig bigWig (plus strand signal of all reads) 59.9 MB
ENCFF109CNV.bigWig bigWig (plus strand signal of unique reads) 79.0 MB
ENCFF120SWR.bam bam (transcriptome alignments) 5.2 GB
ENCFF121QGM.fastq fastq (reads) 2.2 GB
ENCFF128XIK.bigWig bigWig (minus strand signal of all reads) 83.9 MB
ENCFF156XHM.bigWig bigWig (minus strand signal of unique reads) 58.2 MB
ENCFF162CWQ.bigWig bigWig (minus strand signal of unique reads) 54.8 MB
ENCFF174ESJ.bigWig bigWig (minus strand signal of unique reads) 76.9 MB
ENCFF178NNK.bam bam (alignments) 3.5 GB
ENCFF185JIF.tsv tsv (gene quantifications) 9.1 MB
ENCFF187GFE.bigWig bigWig (minus strand signal of unique reads) 57.4 MB
ENCFF201BEJ.bigWig bigWig (plus strand signal of unique reads) 83.6 MB
ENCFF201QMO.bam bam (transcriptome alignments) 2.8 GB
ENCFF244EVX.bigWig bigWig (minus strand signal of all reads) 65.3 MB
ENCFF255JNV.tsv tsv (gene quantifications) 9.1 MB
ENCFF260WQH.tsv tsv (transcript quantifications) 27.2 MB
ENCFF272VCK.bigWig bigWig (plus strand signal of unique reads) 56.0 MB
ENCFF277FPL.bigWig bigWig (plus strand signal of all reads) 83.4 MB
ENCFF283IIJ.bigWig bigWig (minus strand signal of all reads) 77.2 MB
ENCFF284SNG.bam bam (alignments) 3.5 GB
ENCFF295DIB.bigWig bigWig (minus strand signal of all reads) 65.2 MB
ENCFF300DCN.bigWig bigWig (plus strand signal of all reads) 92.2 MB
ENCFF300EYQ.bigWig bigWig (plus strand signal of all reads) 66.1 MB
ENCFF315JSP.bigWig bigWig (plus strand signal of all reads) 85.5 MB
ENCFF356DTI.bigWig bigWig (plus strand signal of all reads) 93.4 MB
ENCFF373DVR.bam bam (transcriptome alignments) 2.7 GB
ENCFF391ZUW.bigWig bigWig (minus strand signal of all reads) 82.3 MB
ENCFF401UQZ.bigWig bigWig (plus strand signal of unique reads) 73.3 MB
ENCFF420XPX.fastq fastq (reads) 1.3 GB
ENCFF448ATY.bigWig bigWig (plus strand signal of unique reads) 83.2 MB
ENCFF448TDK.bam bam (transcriptome alignments) 4.6 GB
ENCFF454NUA.bigWig bigWig (plus strand signal of all reads) 66.2 MB
ENCFF464MJU.tsv tsv (transcript quantifications) 24.9 MB
ENCFF486SAB.bigWig bigWig (minus strand signal of unique reads) 81.2 MB
ENCFF489XVS.bigWig bigWig (minus strand signal of unique reads) 80.6 MB
ENCFF495RLF.tsv tsv (transcript quantifications) 25.3 MB
ENCFF517TYU.bigWig bigWig (minus strand signal of all reads) 60.0 MB
ENCFF540NDM.bigWig bigWig (minus strand signal of all reads) 65.4 MB
ENCFF541EOI.tsv tsv (transcript quantifications) 29.8 MB
ENCFF558RNQ.tsv tsv (gene quantifications) 10.4 MB
ENCFF579OMZ.tsv tsv (transcript quantifications) 27.3 MB
ENCFF585WBP.bigWig bigWig (plus strand signal of all reads) 93.4 MB
ENCFF614HUP.bigWig bigWig (minus strand signal of all reads) 59.2 MB
ENCFF624CVF.bam bam (transcriptome alignments) 4.6 GB
ENCFF636DCO.bigWig bigWig (plus strand signal of all reads) 56.6 MB
ENCFF636FCJ.bam bam (alignments) 4.3 GB
ENCFF651JJW.bigWig bigWig (plus strand signal of all reads) 61.1 MB
ENCFF651MZL.bigWig bigWig (minus strand signal of unique reads) 71.3 MB
ENCFF655KYK.tsv tsv (gene quantifications) 10.4 MB
ENCFF661OOX.bigWig bigWig (plus strand signal of unique reads) 55.8 MB
ENCFF668XGF.bigWig bigWig (plus strand signal of unique reads) 52.6 MB
ENCFF678SFB.tsv tsv (transcript quantifications) 29.7 MB
ENCFF712XYW.tsv tsv (gene quantifications) 9.4 MB
ENCFF715XPH.bigWig bigWig (minus strand signal of unique reads) 81.4 MB
ENCFF718YRC.bigWig bigWig (minus strand signal of all reads) 92.2 MB
ENCFF721OVR.bam bam (alignments) 3.6 GB
ENCFF732PAC.bigWig bigWig (plus strand signal of unique reads) 59.5 MB
ENCFF766NTN.tsv tsv (gene quantifications) 9.4 MB
ENCFF781HCE.fastq fastq (reads) 2.2 GB
ENCFF809EEX.bigWig bigWig (plus strand signal of all reads) 65.9 MB
ENCFF827YOL.bigWig bigWig (minus strand signal of all reads) 55.6 MB
ENCFF839YQW.bigWig bigWig (plus strand signal of unique reads) 82.6 MB
ENCFF861HTL.fastq fastq (reads) 1.3 GB
ENCFF864EPJ.bigWig bigWig (minus strand signal of unique reads) 54.4 MB
ENCFF871AGP.tsv tsv (transcript quantifications) 24.8 MB
ENCFF936ZIY.bam bam (alignments) 2.6 GB
ENCFF938KPV.bam bam (alignments) 2.2 GB
ENCFF941TVX.bam bam (transcriptome alignments) 3.1 GB
ENCFF944AGV.bam bam (alignments) 2.1 GB
ENCFF951AKS.bam bam (alignments) 4.1 GB
ENCFF954DPS.bam bam (alignments) 2.6 GB
ENCFF966JPZ.bigWig bigWig (plus strand signal of all reads) 78.7 MB
ENCSR010ZMZ ENCSR · via encode_api

shRNA knockdown against HLTF in HepG2 cells followed by RNA-seq. (HLTF BGHLV14)

Homo sapiens

92 data files
FileTypeSize
ENCFF007GYD.tsv tsv (transcript quantifications) 27.3 MB
ENCFF041GHU.bigWig bigWig (minus strand signal of all reads) 84.1 MB
ENCFF042XQC.bigWig bigWig (plus strand signal of all reads) 85.2 MB
ENCFF045PKY.bigWig bigWig (minus strand signal of unique reads) 71.8 MB
ENCFF051DFK.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF056CJO.fastq fastq (reads) 2.4 GB
ENCFF060TAD.tsv tsv (differential expression quantifications) 4.3 MB
ENCFF073ECH.bigWig bigWig (minus strand signal of unique reads) 78.4 MB
ENCFF073LJK.bigWig bigWig (plus strand signal of all reads) 73.8 MB
ENCFF082DCF.bigWig bigWig (plus strand signal of all reads) 77.2 MB
ENCFF094QVY.tsv tsv (transcript quantifications) 24.9 MB
ENCFF120YPA.bam bam (alignments) 3.8 GB
ENCFF124JZZ.bigWig bigWig (plus strand signal of all reads) 81.4 MB
ENCFF132LGV.bam bam (alignments) 3.8 GB
ENCFF135SYK.bam bam (alignments) 4.2 GB
ENCFF137EBC.bigWig bigWig (minus strand signal of all reads) 76.2 MB
ENCFF152IIO.tsv tsv (gene quantifications) 9.1 MB
ENCFF183HLM.bigWig bigWig (plus strand signal of all reads) 88.4 MB
ENCFF191IRA.bam bam (transcriptome alignments) 6.6 GB
ENCFF209OKV.bigWig bigWig (minus strand signal of unique reads) 78.5 MB
ENCFF209TOF.bam bam (transcriptome alignments) 6.0 GB
ENCFF212SFA.bigWig bigWig (plus strand signal of all reads) 88.4 MB
ENCFF216UOR.bigWig bigWig (plus strand signal of unique reads) 69.4 MB
ENCFF216XSN.fastq fastq (reads) 2.5 GB
ENCFF244OYK.bigWig bigWig (minus strand signal of all reads) 77.8 MB
ENCFF262YJZ.bigWig bigWig (plus strand signal of unique reads) 76.7 MB
ENCFF271CRB.bigWig bigWig (plus strand signal of unique reads) 77.8 MB
ENCFF276BYL.bam bam (transcriptome alignments) 5.9 GB
ENCFF287WYV.bigWig bigWig (minus strand signal of unique reads) 71.3 MB
ENCFF296YZW.bigWig bigWig (plus strand signal of all reads) 88.1 MB
ENCFF300XWG.tsv tsv (gene quantifications) 10.4 MB
ENCFF302DNP.bam bam (alignments) 4.5 GB
ENCFF311YPS.tar tar (differential splicing quantifications) 3.0 MB
ENCFF346WGL.tsv tsv (transcript quantifications) 29.8 MB
ENCFF360ZPT.bigWig bigWig (plus strand signal of all reads) 84.9 MB
ENCFF370OFY.bigWig bigWig (minus strand signal of unique reads) 75.5 MB
ENCFF389BZU.bam bam (alignments) 4.9 GB
ENCFF392OIQ.bigWig bigWig (plus strand signal of unique reads) 72.5 MB
ENCFF406WGC.bigWig bigWig (minus strand signal of unique reads) 75.1 MB
ENCFF408NBY.bigWig bigWig (plus strand signal of all reads) 79.1 MB
ENCFF415VJY.bigWig bigWig (minus strand signal of all reads) 74.9 MB
ENCFF429VEM.bigWig bigWig (minus strand signal of all reads) 84.1 MB
ENCFF430LOU.bigWig bigWig (plus strand signal of all reads) 80.5 MB
ENCFF472ZVY.tsv tsv (differential expression quantifications) 5.5 MB
ENCFF478IGZ.tsv tsv (gene quantifications) 10.4 MB
ENCFF489HTC.bigWig bigWig (plus strand signal of all reads) 85.2 MB
ENCFF496YWG.bam bam (transcriptome alignments) 5.4 GB
ENCFF498LVB.bigWig bigWig (minus strand signal of all reads) 87.1 MB
ENCFF501AIE.bigWig bigWig (minus strand signal of unique reads) 74.2 MB
ENCFF520PLO.tsv tsv (transcript quantifications) 25.3 MB
ENCFF526CFA.bigWig bigWig (plus strand signal of unique reads) 80.2 MB
ENCFF544KWJ.bigWig bigWig (minus strand signal of all reads) 79.3 MB
ENCFF546FQP.bam bam (alignments) 4.1 GB
ENCFF556MBO.bam bam (transcriptome alignments) 5.9 GB
ENCFF580NCN.tsv tsv (gene quantifications) 9.4 MB
ENCFF586PON.bigWig bigWig (minus strand signal of unique reads) 78.0 MB
ENCFF601VON.bigWig bigWig (minus strand signal of unique reads) 76.1 MB
ENCFF609BMN.fastq fastq (reads) 2.7 GB
ENCFF613REQ.tsv tsv (gene quantifications) 9.1 MB
ENCFF620JFB.bigWig bigWig (plus strand signal of unique reads) 77.1 MB
ENCFF631AKB.bigWig bigWig (plus strand signal of unique reads) 76.0 MB
ENCFF661RBR.tar tar (differential splicing quantifications) 3.6 MB
ENCFF677IJY.bigWig bigWig (plus strand signal of all reads) 76.3 MB
ENCFF683BPR.bigWig bigWig (minus strand signal of all reads) 87.1 MB
ENCFF685TJP.bigWig bigWig (minus strand signal of all reads) 72.6 MB
ENCFF691DJJ.tar tar (differential splicing quantifications) 14.9 MB
ENCFF707WOJ.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF712QAV.bigWig bigWig (plus strand signal of unique reads) 80.2 MB
ENCFF717JPN.bigWig bigWig (minus strand signal of unique reads) 74.6 MB
ENCFF736ADB.tsv tsv (transcript quantifications) 25.3 MB
ENCFF741SGC.bigWig bigWig (minus strand signal of all reads) 84.0 MB
ENCFF778QJM.bigWig bigWig (minus strand signal of unique reads) 70.6 MB
ENCFF791RLG.bam bam (alignments) 4.1 GB
ENCFF798RSV.bam bam (alignments) 4.5 GB
ENCFF803KQM.bam bam (alignments) 3.8 GB
ENCFF809BOA.tsv tsv (gene quantifications) 9.4 MB
ENCFF813VOG.fastq fastq (reads) 2.6 GB
ENCFF847YPL.bam bam (alignments) 4.4 GB
ENCFF855EZU.bigWig bigWig (plus strand signal of unique reads) 73.5 MB
ENCFF861IRF.bigWig bigWig (plus strand signal of unique reads) 76.2 MB
ENCFF870ZLF.bam bam (transcriptome alignments) 5.4 GB
ENCFF899SLJ.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF900RHC.tsv tsv (transcript quantifications) 27.3 MB
ENCFF911ADE.bigWig bigWig (minus strand signal of all reads) 87.0 MB
ENCFF915DOI.bigWig bigWig (plus strand signal of unique reads) 79.8 MB
ENCFF919LZP.bigWig bigWig (plus strand signal of unique reads) 72.8 MB
ENCFF921OOX.bam bam (alignments) 4.9 GB
ENCFF939VJX.bigWig bigWig (minus strand signal of unique reads) 67.7 MB
ENCFF953VST.tsv tsv (transcript quantifications) 29.8 MB
ENCFF954BXO.tsv tsv (transcript quantifications) 24.9 MB
ENCFF971UBS.bigWig bigWig (minus strand signal of all reads) 80.1 MB
ENCFF997OPG.bam bam (alignments) 4.8 GB
ENCSR063HQO ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) pulldown experiment against EWSR1

12 data files
FileTypeSize
ENCFF100OEJ.tsv tsv (enrichment) 51.0 KB
ENCFF127WKQ.tsv tsv (library fraction) 17.8 KB
ENCFF283ODT.bed bed (peaks) 655.2 KB
ENCFF352GUJ.fastq fastq (reads) 350.1 MB
ENCFF364MOL.tsv tsv (enrichment) 208.0 KB
ENCFF484JBC.tsv tsv (library fraction) 313.1 KB
ENCFF500XUN.tsv tsv (library fraction) 75.2 KB
ENCFF561OTA.fastq fastq (reads) 445.3 MB
ENCFF589AOW.tsv tsv (enrichment) 12.5 KB
ENCFF690OPZ.fastq fastq (reads) 342.8 MB
ENCFF806UZR.fastq fastq (reads) 356.2 MB
ENCFF846YUO.fastq fastq (reads) 163.6 MB
ENCSR206RXT ENCSR · via encode_api

eCLIP experiment on K562 against AKAP8L

Homo sapiens

36 data files
FileTypeSize
ENCFF039TMU.bigBed bigBed (peaks); assembly: GRCh38 471.1 KB
ENCFF057QQP.bigBed bigBed (peaks); assembly: GRCh38 445.5 KB
ENCFF071DWM.bed bed (peaks); assembly: GRCh38 1.4 MB
ENCFF078MTW.bed bed (peaks); assembly: GRCh38 184.9 KB
ENCFF091OYS.bed bed (peaks); assembly: GRCh38 2.0 MB
ENCFF127ULN.bam bam (alignments); assembly: hg19 288.9 MB
ENCFF136DYC.bed bed (peaks); assembly: hg19 570.4 KB
ENCFF143KCR.bam bam (alignments); assembly: GRCh38 277.6 MB
ENCFF143UZI.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 16.3 MB
ENCFF150FZT.bigBed bigBed (peaks); assembly: GRCh38 4.0 MB
ENCFF178TIK.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 17.0 MB
ENCFF189LGT.bed bed (peaks); assembly: hg19 2.1 MB
ENCFF201QGX.bigBed bigBed (peaks); assembly: hg19 4.1 MB
ENCFF202ILW.bigBed bigBed (peaks); assembly: hg19 2.0 MB
ENCFF205UTG.bed bed (peaks); assembly: GRCh38 47.5 KB
ENCFF213IET.bed bed (peaks); assembly: GRCh38 194.7 KB
ENCFF228RUA.fastq fastq (reads) 488.3 MB
ENCFF245JZB.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 16.4 MB
ENCFF259BMC.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 20.5 MB
ENCFF351YUV.bed bed (peaks); assembly: hg19 576.7 KB
ENCFF368HXQ.fastq fastq (reads) 480.9 MB
ENCFF443KRX.fastq fastq (reads) 839.4 MB
ENCFF490GRS.bigBed bigBed (peaks); assembly: hg19 2.0 MB
ENCFF577SYV.bigBed bigBed (peaks); assembly: hg19 2.8 MB
ENCFF580SQQ.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 21.3 MB
ENCFF609AFL.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 21.9 MB
ENCFF642ESE.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 21.1 MB
ENCFF670RQS.bigBed bigBed (peaks); assembly: hg19 1.1 MB
ENCFF763JQU.bigBed bigBed (peaks); assembly: GRCh38 2.8 MB
ENCFF778ETC.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 15.8 MB
ENCFF781FPH.bed bed (peaks); assembly: hg19 1.4 MB
ENCFF922LHG.bigBed bigBed (peaks); assembly: hg19 1.3 MB
ENCFF923ZLX.bed bed (peaks); assembly: hg19 45.2 KB
ENCFF941NZR.fastq fastq (reads) 822.4 MB
ENCFF941SIX.bam bam (alignments); assembly: GRCh38 407.4 MB
ENCFF977DLI.bam bam (alignments); assembly: hg19 425.5 MB
ENCSR000SSH ENCSR · via encode_api

eCLIP experiment on K562 against SLTM

Homo sapiens

36 data files
FileTypeSize
ENCFF018YNA.bigBed bigBed (peaks); assembly: GRCh38 2.2 MB
ENCFF052VSB.bed bed (peaks); assembly: hg19 1.1 MB
ENCFF113JDM.bigBed bigBed (peaks); assembly: GRCh38 2.8 MB
ENCFF125YXW.bed bed (peaks); assembly: GRCh38 1.4 MB
ENCFF142CYB.bigBed bigBed (peaks); assembly: hg19 1.6 MB
ENCFF143UZQ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 14.1 MB
ENCFF206WBW.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 15.7 MB
ENCFF207CVG.bigBed bigBed (peaks); assembly: GRCh38 399.2 KB
ENCFF224OZW.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 15.7 MB
ENCFF281QMA.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 16.7 MB
ENCFF334ONA.fastq fastq (reads) 299.7 MB
ENCFF373IVQ.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 14.0 MB
ENCFF392CBU.bed bed (peaks); assembly: hg19 1.4 MB
ENCFF396BVL.bam bam (alignments); assembly: GRCh38 223.4 MB
ENCFF405BRH.bam bam (alignments); assembly: hg19 282.3 MB
ENCFF413ZOM.bed bed (peaks); assembly: hg19 564.1 KB
ENCFF419ZVO.bigBed bigBed (peaks); assembly: hg19 2.2 MB
ENCFF470BUR.fastq fastq (reads) 351.0 MB
ENCFF485BRZ.bed bed (peaks); assembly: GRCh38 1.1 MB
ENCFF506XBB.fastq fastq (reads) 318.6 MB
ENCFF525TDH.bigBed bigBed (peaks); assembly: hg19 1.2 MB
ENCFF557ZHN.bigBed bigBed (peaks); assembly: hg19 2.0 MB
ENCFF579HWA.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 13.5 MB
ENCFF587QQE.bed bed (peaks); assembly: GRCh38 202.9 KB
ENCFF665PCI.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 16.4 MB
ENCFF690BRU.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 13.6 MB
ENCFF693ZAZ.bed bed (peaks); assembly: hg19 70.9 KB
ENCFF696QWE.bed bed (peaks); assembly: GRCh38 73.4 KB
ENCFF712SXL.bam bam (alignments); assembly: GRCh38 277.3 MB
ENCFF760PJU.bigBed bigBed (peaks); assembly: GRCh38 479.6 KB
ENCFF827FAW.bam bam (alignments); assembly: hg19 227.6 MB
ENCFF850ANR.bigBed bigBed (peaks); assembly: hg19 858.6 KB
ENCFF871GKS.bed bed (peaks); assembly: GRCh38 153.0 KB
ENCFF896KIF.fastq fastq (reads) 372.0 MB
ENCFF944JYG.bed bed (peaks); assembly: hg19 432.8 KB
ENCFF990IRK.bigBed bigBed (peaks); assembly: hg19 2.7 MB
ENCSR907GUB ENCSR · via encode_api

eCLIP experiment on HepG2 against ZC3H11A

Homo sapiens

30 data files
FileTypeSize
ENCFF023GYY.bam bam (alignments); assembly: GRCh38 636.9 MB
ENCFF054SDW.bigBed bigBed (peaks); assembly: hg19 1.4 MB
ENCFF055TAZ.bed bed (peaks); assembly: hg19 25.5 KB
ENCFF058BHE.bed bed (peaks); assembly: hg19 3.0 MB
ENCFF058CEF.fastq fastq (reads) 709.0 MB
ENCFF064EVY.bigBed bigBed (peaks); assembly: GRCh38 5.9 MB
ENCFF097XMF.bigBed bigBed (peaks); assembly: hg19 1.4 MB
ENCFF137HKN.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 28.8 MB
ENCFF141VGU.bed bed (peaks); assembly: hg19 3.1 MB
ENCFF225LEZ.bam bam (alignments); assembly: hg19 663.8 MB
ENCFF260RXC.bed bed (peaks); assembly: hg19 712.5 KB
ENCFF309MWT.bigBed bigBed (peaks); assembly: hg19 5.9 MB
ENCFF361GRY.bed bed (peaks); assembly: GRCh38 3.0 MB
ENCFF427HEM.bigBed bigBed (peaks); assembly: GRCh38 5.7 MB
ENCFF454CLN.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 33.4 MB
ENCFF458RXV.fastq fastq (reads) 715.0 MB
ENCFF481WSB.fastq fastq (reads) 668.5 MB
ENCFF488BII.bigBed bigBed (peaks); assembly: hg19 5.7 MB
ENCFF581ZSJ.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 32.6 MB
ENCFF587DYP.bed bed (peaks); assembly: hg19 670.9 KB
ENCFF592WIH.bed bed (peaks); assembly: GRCh38 25.4 KB
ENCFF616NRU.bed bed (peaks); assembly: GRCh38 3.1 MB
ENCFF739NMD.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 30.0 MB
ENCFF784LBV.bam bam (alignments); assembly: hg19 589.0 MB
ENCFF824KNR.fastq fastq (reads) 666.4 MB
ENCFF904WAE.bam bam (alignments); assembly: GRCh38 570.4 MB
ENCFF937ZFS.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 33.5 MB
ENCFF959OIY.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 32.1 MB
ENCFF963VRZ.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 29.4 MB
ENCFF973WCF.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 28.9 MB
ENCSR004RGI ENCSR · via encode_api

shRNA knockdown against RPS10 in K562 cells followed by RNA-seq. (RPS10 BGKLV13)

Homo sapiens

92 data files
FileTypeSize
ENCFF037YVY.bam bam (transcriptome alignments) 4.5 GB
ENCFF039CAY.bigWig bigWig (plus strand signal of unique reads) 71.5 MB
ENCFF046VJY.bigWig bigWig (minus strand signal of all reads) 68.3 MB
ENCFF050KZC.bigWig bigWig (plus strand signal of unique reads) 65.7 MB
ENCFF058ZNL.bigWig bigWig (minus strand signal of unique reads) 68.0 MB
ENCFF079CXW.bam bam (alignments) 3.9 GB
ENCFF094LUO.tsv tsv (differential expression quantifications) 4.1 MB
ENCFF095WOT.tar tar (differential splicing quantifications) 3.5 MB
ENCFF103QTR.tsv tsv (transcript quantifications) 25.3 MB
ENCFF105KXK.bam bam (alignments) 3.5 GB
ENCFF115NGE.bigWig bigWig (plus strand signal of all reads) 71.4 MB
ENCFF141JHM.bam bam (transcriptome alignments) 4.5 GB
ENCFF177AHZ.bigWig bigWig (plus strand signal of unique reads) 71.6 MB
ENCFF211AFX.bigWig bigWig (plus strand signal of unique reads) 69.4 MB
ENCFF227MRH.bigWig bigWig (minus strand signal of unique reads) 66.1 MB
ENCFF234IYD.bigWig bigWig (minus strand signal of unique reads) 70.0 MB
ENCFF238PPL.bigWig bigWig (plus strand signal of unique reads) 68.1 MB
ENCFF247ZGK.bigWig bigWig (minus strand signal of unique reads) 68.7 MB
ENCFF253HZP.tsv tsv (transcript quantifications) 24.9 MB
ENCFF261CVB.bigWig bigWig (plus strand signal of all reads) 80.2 MB
ENCFF271EGW.bigWig bigWig (minus strand signal of unique reads) 70.1 MB
ENCFF275GRU.bigWig bigWig (plus strand signal of unique reads) 64.4 MB
ENCFF276DAP.bigWig bigWig (plus strand signal of all reads) 74.5 MB
ENCFF284SFA.bigWig bigWig (minus strand signal of unique reads) 72.3 MB
ENCFF306KMI.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF314XJR.bigWig bigWig (plus strand signal of all reads) 73.2 MB
ENCFF319MOT.tar tar (differential splicing quantifications) 3.1 MB
ENCFF321VQN.bam bam (alignments) 4.0 GB
ENCFF336KTG.bigWig bigWig (plus strand signal of all reads) 69.2 MB
ENCFF344CAZ.bigWig bigWig (plus strand signal of unique reads) 74.0 MB
ENCFF346SNL.tsv tsv (transcript quantifications) 29.8 MB
ENCFF351XOK.bigWig bigWig (minus strand signal of all reads) 79.8 MB
ENCFF360DZU.bigWig bigWig (minus strand signal of unique reads) 64.0 MB
ENCFF361TIE.bigWig bigWig (plus strand signal of unique reads) 70.4 MB
ENCFF372UWN.bam bam (transcriptome alignments) 4.0 GB
ENCFF375UCU.bigWig bigWig (minus strand signal of all reads) 81.4 MB
ENCFF387VQU.tsv tsv (gene quantifications) 9.4 MB
ENCFF389BQY.bigWig bigWig (minus strand signal of unique reads) 71.7 MB
ENCFF422IJB.bigWig bigWig (plus strand signal of unique reads) 71.5 MB
ENCFF426SAE.bigWig bigWig (plus strand signal of unique reads) 67.4 MB
ENCFF428WUH.bigWig bigWig (minus strand signal of all reads) 81.4 MB
ENCFF440DTB.bam bam (transcriptome alignments) 4.5 GB
ENCFF442AWK.bigWig bigWig (minus strand signal of all reads) 70.1 MB
ENCFF442BIU.bigWig bigWig (minus strand signal of all reads) 73.6 MB
ENCFF457ASK.bigWig bigWig (plus strand signal of all reads) 81.5 MB
ENCFF459YMO.bam bam (alignments) 3.0 GB
ENCFF468YVZ.bam bam (transcriptome alignments) 4.0 GB
ENCFF479SZQ.bam bam (alignments) 3.6 GB
ENCFF495UKP.bigWig bigWig (plus strand signal of all reads) 80.6 MB
ENCFF500NBH.bigWig bigWig (minus strand signal of unique reads) 62.9 MB
ENCFF503BSF.tsv tsv (differential expression quantifications) 2.6 MB
ENCFF503KUM.fastq fastq (reads) 1.9 GB
ENCFF514OEF.bam bam (alignments) 3.6 GB
ENCFF514YXZ.tsv tsv (transcript quantifications) 27.3 MB
ENCFF516NQS.bam bam (alignments) 3.0 GB
ENCFF526WWR.bigWig bigWig (minus strand signal of all reads) 73.9 MB
ENCFF534ROC.tsv tsv (gene quantifications) 10.4 MB
ENCFF536AIR.tsv tsv (transcript quantifications) 29.8 MB
ENCFF550KAB.tsv tsv (gene quantifications) 10.4 MB
ENCFF573IJZ.bigWig bigWig (minus strand signal of all reads) 72.1 MB
ENCFF577PUE.tsv tsv (differential expression quantifications) 1.8 MB
ENCFF598TXM.tsv tsv (differential expression quantifications) 5.5 MB
ENCFF623QYR.tsv tsv (gene quantifications) 9.1 MB
ENCFF661KJH.tar tar (differential splicing quantifications) 13.5 MB
ENCFF665AJR.bigWig bigWig (plus strand signal of unique reads) 74.0 MB
ENCFF674GVU.tsv tsv (gene quantifications) 9.4 MB
ENCFF686AOJ.bigWig bigWig (plus strand signal of all reads) 72.9 MB
ENCFF729HWC.bigWig bigWig (minus strand signal of unique reads) 66.5 MB
ENCFF732SII.bam bam (transcriptome alignments) 5.0 GB
ENCFF733DTF.bam bam (alignments) 3.1 GB
ENCFF762WIC.tsv tsv (gene quantifications) 9.1 MB
ENCFF771HJQ.bam bam (alignments) 4.0 GB
ENCFF814YOH.bam bam (alignments) 3.3 GB
ENCFF815QDH.fastq fastq (reads) 2.1 GB
ENCFF823COB.tsv tsv (transcript quantifications) 27.3 MB
ENCFF843EUD.fastq fastq (reads) 1.9 GB
ENCFF853FEU.bam bam (alignments) 3.3 GB
ENCFF856RBI.bigWig bigWig (minus strand signal of all reads) 80.7 MB
ENCFF862YRR.bigWig bigWig (plus strand signal of unique reads) 73.2 MB
ENCFF878HAS.bigWig bigWig (minus strand signal of all reads) 80.6 MB
ENCFF883VQE.tsv tsv (transcript quantifications) 24.9 MB
ENCFF887QRI.tsv tsv (transcript quantifications) 25.3 MB
ENCFF893KFG.fastq fastq (reads) 2.1 GB
ENCFF907BCO.bigWig bigWig (minus strand signal of all reads) 72.1 MB
ENCFF922IOC.bam bam (alignments) 3.3 GB
ENCFF927VXN.bigWig bigWig (plus strand signal of all reads) 81.5 MB
ENCFF930RWO.bigWig bigWig (plus strand signal of all reads) 82.3 MB
ENCFF937RMA.bigWig bigWig (minus strand signal of unique reads) 72.4 MB
ENCFF942QPF.bigWig bigWig (minus strand signal of all reads) 79.4 MB
ENCFF945SLS.bigWig bigWig (plus strand signal of all reads) 75.1 MB
ENCFF973IHQ.bigWig bigWig (minus strand signal of unique reads) 69.9 MB
ENCFF984GKG.bigWig bigWig (plus strand signal of all reads) 82.3 MB
ENCSR783LUA ENCSR · via encode_api

shRNA knockdown against PRPF6 in K562 cells followed by RNA-seq. (PRPF6 BGKLV13)

Homo sapiens

92 data files
FileTypeSize
ENCFF002QDY.tsv tsv (gene quantifications) 9.1 MB
ENCFF003GUD.bigWig bigWig (minus strand signal of all reads) 82.4 MB
ENCFF009BKH.bigWig bigWig (plus strand signal of unique reads) 83.1 MB
ENCFF014WGB.bigWig bigWig (plus strand signal of unique reads) 82.6 MB
ENCFF016NYB.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF019RMF.bigWig bigWig (plus strand signal of unique reads) 74.5 MB
ENCFF036YQW.bam bam (transcriptome alignments) 5.3 GB
ENCFF039VFF.bam bam (alignments) 3.9 GB
ENCFF066JTG.bam bam (transcriptome alignments) 5.3 GB
ENCFF073MYF.tsv tsv (gene quantifications) 9.4 MB
ENCFF077OZY.bigWig bigWig (minus strand signal of all reads) 82.8 MB
ENCFF087ILB.bam bam (alignments) 4.6 GB
ENCFF096EUQ.bigWig bigWig (plus strand signal of unique reads) 77.7 MB
ENCFF107NMN.tsv tsv (transcript quantifications) 29.8 MB
ENCFF111IUA.bigWig bigWig (minus strand signal of all reads) 90.5 MB
ENCFF120XBR.bigWig bigWig (plus strand signal of all reads) 93.2 MB
ENCFF155IYR.bigWig bigWig (plus strand signal of all reads) 93.2 MB
ENCFF157NXR.bigWig bigWig (plus strand signal of all reads) 91.0 MB
ENCFF172XTC.bigWig bigWig (plus strand signal of unique reads) 78.1 MB
ENCFF174WED.bigWig bigWig (plus strand signal of unique reads) 83.2 MB
ENCFF180ALH.bigWig bigWig (plus strand signal of all reads) 93.2 MB
ENCFF209IIE.bigWig bigWig (plus strand signal of all reads) 83.5 MB
ENCFF211GUJ.bam bam (transcriptome alignments) 6.0 GB
ENCFF214JMT.tsv tsv (transcript quantifications) 24.9 MB
ENCFF217BVU.bam bam (alignments) 3.9 GB
ENCFF217LME.tsv tsv (transcript quantifications) 27.4 MB
ENCFF219LEJ.bigWig bigWig (minus strand signal of unique reads) 76.3 MB
ENCFF232GNX.bigWig bigWig (minus strand signal of unique reads) 80.9 MB
ENCFF235VUO.tsv tsv (gene quantifications) 9.1 MB
ENCFF247YGD.bigWig bigWig (plus strand signal of all reads) 80.2 MB
ENCFF258QDQ.bigWig bigWig (minus strand signal of unique reads) 76.8 MB
ENCFF297FWA.tsv tsv (transcript quantifications) 25.3 MB
ENCFF300PCG.bam bam (alignments) 3.9 GB
ENCFF306DLM.tsv tsv (transcript quantifications) 24.9 MB
ENCFF321WEQ.bigWig bigWig (minus strand signal of unique reads) 77.0 MB
ENCFF325FOX.bam bam (transcriptome alignments) 5.9 GB
ENCFF332WFV.bam bam (transcriptome alignments) 5.3 GB
ENCFF336CMV.bigWig bigWig (minus strand signal of unique reads) 72.4 MB
ENCFF365BCU.bigWig bigWig (minus strand signal of unique reads) 80.4 MB
ENCFF374FGI.bigWig bigWig (plus strand signal of all reads) 83.9 MB
ENCFF378GLX.tsv tsv (transcript quantifications) 29.8 MB
ENCFF385VXJ.bigWig bigWig (minus strand signal of unique reads) 80.6 MB
ENCFF442NAQ.tsv tsv (differential expression quantifications) 5.5 MB
ENCFF453QRH.bigWig bigWig (minus strand signal of unique reads) 81.1 MB
ENCFF467HQK.bigWig bigWig (minus strand signal of unique reads) 80.0 MB
ENCFF467VAU.bam bam (alignments) 4.6 GB
ENCFF474XZL.bigWig bigWig (minus strand signal of all reads) 83.5 MB
ENCFF480MUJ.tsv tsv (gene quantifications) 10.4 MB
ENCFF481QBM.bigWig bigWig (minus strand signal of all reads) 89.8 MB
ENCFF491GQY.fastq fastq (reads) 2.5 GB
ENCFF492NJA.bigWig bigWig (plus strand signal of all reads) 85.3 MB
ENCFF498FQP.tsv tsv (transcript quantifications) 27.3 MB
ENCFF507SWE.bigWig bigWig (plus strand signal of all reads) 80.0 MB
ENCFF508CSG.bigWig bigWig (plus strand signal of all reads) 85.0 MB
ENCFF512BHQ.tsv tsv (gene quantifications) 9.4 MB
ENCFF528TZG.bigWig bigWig (minus strand signal of all reads) 91.8 MB
ENCFF547WJO.bigWig bigWig (plus strand signal of unique reads) 79.1 MB
ENCFF552PPN.fastq fastq (reads) 2.4 GB
ENCFF567JBI.bigWig bigWig (minus strand signal of all reads) 91.9 MB
ENCFF573JHB.bigWig bigWig (minus strand signal of unique reads) 81.2 MB
ENCFF576MJJ.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF578VZZ.fastq fastq (reads) 2.4 GB
ENCFF588YAS.bigWig bigWig (minus strand signal of unique reads) 72.8 MB
ENCFF590NBA.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF599LMH.tsv tsv (gene quantifications) 10.4 MB
ENCFF606NVT.bigWig bigWig (plus strand signal of all reads) 91.7 MB
ENCFF628JXL.tar tar (differential splicing quantifications) 3.6 MB
ENCFF667GJA.tsv tsv (differential expression quantifications) 4.1 MB
ENCFF699JSO.tsv tsv (transcript quantifications) 25.3 MB
ENCFF717GWL.fastq fastq (reads) 2.5 GB
ENCFF718GIT.bam bam (alignments) 4.6 GB
ENCFF787JPV.bigWig bigWig (plus strand signal of all reads) 93.0 MB
ENCFF796GBR.bigWig bigWig (minus strand signal of all reads) 92.0 MB
ENCFF796JTD.bigWig bigWig (minus strand signal of all reads) 78.7 MB
ENCFF803GWQ.bigWig bigWig (plus strand signal of unique reads) 83.2 MB
ENCFF816EUB.bigWig bigWig (minus strand signal of all reads) 83.7 MB
ENCFF831DTF.bam bam (transcriptome alignments) 5.2 GB
ENCFF838CBZ.bam bam (alignments) 3.9 GB
ENCFF844ZMT.bigWig bigWig (minus strand signal of all reads) 78.6 MB
ENCFF858HCC.bigWig bigWig (minus strand signal of unique reads) 75.9 MB
ENCFF858SGI.tar tar (differential splicing quantifications) 4.2 MB
ENCFF859PFW.bam bam (alignments) 3.9 GB
ENCFF873AKP.bam bam (alignments) 4.6 GB
ENCFF909FKV.bigWig bigWig (plus strand signal of unique reads) 82.1 MB
ENCFF911RWQ.tar tar (differential splicing quantifications) 15.3 MB
ENCFF941DFS.bigWig bigWig (plus strand signal of unique reads) 82.4 MB
ENCFF953DXT.bigWig bigWig (minus strand signal of all reads) 92.0 MB
ENCFF953HAK.bigWig bigWig (plus strand signal of unique reads) 78.9 MB
ENCFF961SNY.bigWig bigWig (plus strand signal of unique reads) 74.9 MB
ENCFF967DKY.bam bam (alignments) 4.5 GB
ENCFF995QUU.bam bam (alignments) 3.9 GB
ENCFF996QBM.bam bam (alignments) 4.5 GB
ENCSR989VIY ENCSR · via encode_api

eCLIP experiment on HepG2 against SRSF1

Homo sapiens

36 data files
FileTypeSize
ENCFF017IOI.fastq fastq (reads) 392.1 MB
ENCFF105LFK.bed bed (peaks); assembly: hg19 1.2 MB
ENCFF124CAG.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 17.5 MB
ENCFF135SKU.bigBed bigBed (peaks); assembly: hg19 3.9 MB
ENCFF150ADU.bigBed bigBed (peaks); assembly: GRCh38 889.2 KB
ENCFF179SCM.bed bed (peaks); assembly: hg19 2.1 MB
ENCFF184TBM.bed bed (peaks); assembly: hg19 1.9 MB
ENCFF207KLW.bigBed bigBed (peaks); assembly: hg19 2.4 MB
ENCFF214HOA.bed bed (peaks); assembly: GRCh38 2.2 MB
ENCFF261GPN.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 18.3 MB
ENCFF286FKW.fastq fastq (reads) 318.7 MB
ENCFF327NVE.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 22.3 MB
ENCFF372JJP.bigBed bigBed (peaks); assembly: hg19 2.5 MB
ENCFF418ZXO.bam bam (alignments); assembly: GRCh38 347.0 MB
ENCFF476IEL.bigBed bigBed (peaks); assembly: GRCh38 907.7 KB
ENCFF499CNS.bigBed bigBed (peaks); assembly: hg19 4.8 MB
ENCFF508DKJ.bed bed (peaks); assembly: GRCh38 1.9 MB
ENCFF510BQT.bigBed bigBed (peaks); assembly: hg19 5.0 MB
ENCFF522HEA.bigBed bigBed (peaks); assembly: GRCh38 4.2 MB
ENCFF530MIN.bed bed (peaks); assembly: hg19 40.2 KB
ENCFF566KHV.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 21.8 MB
ENCFF570HZA.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 21.7 MB
ENCFF745ZQD.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 17.6 MB
ENCFF759OGT.bigBed bigBed (peaks); assembly: hg19 4.2 MB
ENCFF787KND.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 18.4 MB
ENCFF806LMS.bed bed (peaks); assembly: GRCh38 435.3 KB
ENCFF816JAS.fastq fastq (reads) 294.7 MB
ENCFF832WNY.bam bam (alignments); assembly: hg19 350.2 MB
ENCFF837EJE.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 22.5 MB
ENCFF851FZF.fastq fastq (reads) 423.7 MB
ENCFF867TIG.bam bam (alignments); assembly: GRCh38 476.1 MB
ENCFF934ANS.bed bed (peaks); assembly: GRCh38 40.5 KB
ENCFF937LBT.bigBed bigBed (peaks); assembly: GRCh38 3.9 MB
ENCFF938QXN.bed bed (peaks); assembly: hg19 1.1 MB
ENCFF953OZR.bam bam (alignments); assembly: hg19 480.5 MB
ENCFF977LDY.bed bed (peaks); assembly: GRCh38 458.1 KB
ENCSR883BXR ENCSR · via encode_api

shRNA knockdown against LSM11 in HepG2 cells followed by RNA-seq. (LSM11_BGHLV18)

Homo sapiens

92 data files
FileTypeSize
ENCFF009YGT.tar tar (differential splicing quantifications) 3.2 MB
ENCFF010WNS.fastq fastq (reads) 3.0 GB
ENCFF022VPH.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF050XAK.tsv tsv (transcript quantifications) 27.4 MB
ENCFF064UTF.bigWig bigWig (plus strand signal of unique reads) 84.4 MB
ENCFF076FTN.bigWig bigWig (minus strand signal of unique reads) 82.5 MB
ENCFF101FLQ.bam bam (alignments) 4.6 GB
ENCFF117VDU.bigWig bigWig (minus strand signal of all reads) 61.6 MB
ENCFF152ACY.bigWig bigWig (minus strand signal of all reads) 60.0 MB
ENCFF174WHN.bigWig bigWig (minus strand signal of all reads) 91.3 MB
ENCFF176BOL.tsv tsv (differential expression quantifications) 4.1 MB
ENCFF194USN.fastq fastq (reads) 1.7 GB
ENCFF194WZH.tsv tsv (gene quantifications) 10.4 MB
ENCFF204FFT.bigWig bigWig (minus strand signal of unique reads) 59.7 MB
ENCFF206IAK.bigWig bigWig (minus strand signal of unique reads) 75.5 MB
ENCFF234YZC.bam bam (transcriptome alignments) 7.9 GB
ENCFF241EUD.bigWig bigWig (minus strand signal of unique reads) 60.2 MB
ENCFF245MMG.bam bam (alignments) 2.6 GB
ENCFF268DKG.bigWig bigWig (plus strand signal of all reads) 60.9 MB
ENCFF291MCU.tsv tsv (transcript quantifications) 25.3 MB
ENCFF307QMP.bigWig bigWig (minus strand signal of unique reads) 57.1 MB
ENCFF310ETQ.tsv tsv (transcript quantifications) 24.9 MB
ENCFF311RTI.bigWig bigWig (plus strand signal of unique reads) 61.5 MB
ENCFF316XEJ.tar tar (differential splicing quantifications) 3.7 MB
ENCFF328LPA.bigWig bigWig (minus strand signal of unique reads) 77.8 MB
ENCFF333TAQ.bigWig bigWig (plus strand signal of all reads) 67.8 MB
ENCFF337SHK.bam bam (transcriptome alignments) 4.4 GB
ENCFF340XRQ.bigWig bigWig (minus strand signal of unique reads) 54.6 MB
ENCFF343MLY.bigWig bigWig (minus strand signal of unique reads) 57.1 MB
ENCFF374AZN.bigWig bigWig (plus strand signal of unique reads) 84.4 MB
ENCFF378OAA.bigWig bigWig (minus strand signal of all reads) 83.7 MB
ENCFF378XSA.fastq fastq (reads) 1.7 GB
ENCFF387NMU.bam bam (alignments) 2.6 GB
ENCFF394KME.bigWig bigWig (plus strand signal of unique reads) 61.2 MB
ENCFF395NKL.bigWig bigWig (plus strand signal of unique reads) 58.4 MB
ENCFF412JIY.bigWig bigWig (plus strand signal of all reads) 67.8 MB
ENCFF423AYX.bigWig bigWig (plus strand signal of all reads) 85.1 MB
ENCFF423HXB.bigWig bigWig (minus strand signal of all reads) 66.7 MB
ENCFF429AVW.bam bam (alignments) 4.6 GB
ENCFF433YGD.bigWig bigWig (plus strand signal of all reads) 82.4 MB
ENCFF442BLF.bigWig bigWig (plus strand signal of unique reads) 58.4 MB
ENCFF458KAD.bigWig bigWig (plus strand signal of unique reads) 79.7 MB
ENCFF469CJJ.bigWig bigWig (minus strand signal of all reads) 81.9 MB
ENCFF472HPH.tsv tsv (transcript quantifications) 27.2 MB
ENCFF477DQN.bigWig bigWig (plus strand signal of all reads) 83.2 MB
ENCFF498FOE.tsv tsv (differential expression quantifications) 1.8 MB
ENCFF502SMN.bam bam (alignments) 5.4 GB
ENCFF503BDG.bigWig bigWig (plus strand signal of all reads) 62.7 MB
ENCFF511UER.bigWig bigWig (plus strand signal of unique reads) 77.6 MB
ENCFF542ZCS.tsv tsv (gene quantifications) 9.4 MB
ENCFF569KKC.tsv tsv (transcript quantifications) 29.7 MB
ENCFF580KPX.bigWig bigWig (minus strand signal of all reads) 66.7 MB
ENCFF589CTM.tsv tsv (gene quantifications) 9.1 MB
ENCFF591WIE.bigWig bigWig (plus strand signal of unique reads) 56.0 MB
ENCFF600BDG.tsv tsv (gene quantifications) 9.1 MB
ENCFF607UZB.fastq fastq (reads) 3.1 GB
ENCFF608RBP.bam bam (alignments) 2.7 GB
ENCFF615NFH.bam bam (transcriptome alignments) 7.1 GB
ENCFF619CHV.bigWig bigWig (plus strand signal of unique reads) 61.1 MB
ENCFF623VJZ.bigWig bigWig (plus strand signal of all reads) 66.5 MB
ENCFF631JLE.bigWig bigWig (plus strand signal of all reads) 91.5 MB
ENCFF637AWM.tsv tsv (gene quantifications) 9.4 MB
ENCFF640DZK.bam bam (alignments) 5.6 GB
ENCFF647QSM.bigWig bigWig (plus strand signal of all reads) 92.8 MB
ENCFF675QCN.bigWig bigWig (minus strand signal of all reads) 91.4 MB
ENCFF678EMY.bigWig bigWig (plus strand signal of unique reads) 79.7 MB
ENCFF682WSH.bam bam (transcriptome alignments) 3.9 GB
ENCFF691ZNY.tar tar (differential splicing quantifications) 14.8 MB
ENCFF692XYA.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF700ZSK.bigWig bigWig (minus strand signal of unique reads) 78.0 MB
ENCFF701NPH.bam bam (alignments) 4.7 GB
ENCFF723ZAQ.bigWig bigWig (minus strand signal of all reads) 90.2 MB
ENCFF730PVD.bam bam (alignments) 3.2 GB
ENCFF736IBD.bigWig bigWig (minus strand signal of all reads) 58.5 MB
ENCFF736PZE.bam bam (transcriptome alignments) 3.9 GB
ENCFF738MHU.tsv tsv (transcript quantifications) 29.8 MB
ENCFF746KXF.bigWig bigWig (minus strand signal of all reads) 65.7 MB
ENCFF769YET.tsv tsv (transcript quantifications) 25.3 MB
ENCFF779JEQ.tsv tsv (gene quantifications) 10.4 MB
ENCFF795TGL.bigWig bigWig (minus strand signal of unique reads) 81.9 MB
ENCFF809JNT.tsv tsv (transcript quantifications) 24.9 MB
ENCFF830IKJ.bigWig bigWig (minus strand signal of unique reads) 59.7 MB
ENCFF850UCL.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF871IBU.bigWig bigWig (plus strand signal of unique reads) 84.0 MB
ENCFF886GLJ.bigWig bigWig (plus strand signal of all reads) 59.5 MB
ENCFF896NYW.bam bam (alignments) 3.2 GB
ENCFF939XZO.bam bam (alignments) 3.1 GB
ENCFF947NXB.bigWig bigWig (minus strand signal of all reads) 80.7 MB
ENCFF955VCR.bam bam (transcriptome alignments) 7.0 GB
ENCFF965FOF.bam bam (alignments) 5.6 GB
ENCFF968BGM.bigWig bigWig (plus strand signal of all reads) 92.8 MB
ENCFF969PCU.bigWig bigWig (minus strand signal of unique reads) 82.5 MB
ENCSR843QMF ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) pulldown experiment against FUBP1

13 data files
FileTypeSize
ENCFF064EZC.tsv tsv (library fraction) 265.4 KB
ENCFF078JLK.tsv tsv (enrichment) 10.0 KB
ENCFF259WWZ.tsv tsv (enrichment) 688.0 KB
ENCFF319TXL.fastq fastq (reads) 544.5 MB
ENCFF438XEM.tsv tsv (library fraction) 1.1 MB
ENCFF588INN.tsv tsv (enrichment) 41.0 KB
ENCFF597MHG.fastq fastq (reads) 561.2 MB
ENCFF624STJ.fastq fastq (reads) 449.4 MB
ENCFF677VDN.fastq fastq (reads) 1.5 GB
ENCFF679FDX.tsv tsv (library fraction) 15.2 KB
ENCFF884IBI.fastq fastq (reads) 246.9 MB
ENCFF975CXE.tsv tsv (enrichment) 168.0 KB
ENCFF994WHR.tsv tsv (library fraction) 63.9 KB
ENCSR064NOY ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) pulldown experiment against TIA1

15 data files
FileTypeSize
ENCFF025PCM.bed bed (peaks) 122.3 KB
ENCFF042KLN.tsv tsv (library fraction) 15.1 KB
ENCFF217XXK.tsv tsv (library fraction) 63.8 KB
ENCFF268DAL.tsv tsv (enrichment) 168.0 KB
ENCFF278GIB.fastq fastq (reads) 332.0 MB
ENCFF374UTI.fastq fastq (reads) 444.4 MB
ENCFF400JXE.fastq fastq (reads) 305.0 MB
ENCFF403RUI.tsv tsv (enrichment) 10.0 KB
ENCFF424RKK.tsv tsv (library fraction) 1.1 MB
ENCFF540NRR.tsv tsv (library fraction) 265.5 KB
ENCFF633HPI.tsv tsv (enrichment) 688.0 KB
ENCFF748GRE.bed bed (peaks) 408.2 KB
ENCFF815CIK.fastq fastq (reads) 278.2 MB
ENCFF897ONM.fastq fastq (reads) 447.1 MB
ENCFF936GUV.tsv tsv (enrichment) 41.0 KB
ENCSR845VGB ENCSR · via encode_api

eCLIP experiment on HepG2 against DDX55

Homo sapiens

36 data files
FileTypeSize
ENCFF013XEO.bed bed (peaks) 270.7 KB
ENCFF071UFY.bigWig bigWig (plus strand signal of unique reads) 13.2 MB
ENCFF137AEW.bigBed bigBed (peaks) 616.0 KB
ENCFF145NQB.bam bam (alignments) 245.1 MB
ENCFF147YBT.bigBed bigBed (peaks) 1.7 MB
ENCFF163CUI.bed bed (peaks) 1.3 MB
ENCFF315AVG.bed bed (peaks) 1.3 MB
ENCFF318IOH.bigWig bigWig (minus strand signal of unique reads) 5.8 MB
ENCFF337XEL.bigBed bigBed (peaks) 2.7 MB
ENCFF341WEI.fastq fastq (reads) 499.7 MB
ENCFF452KYY.bed bed (peaks) 993.5 KB
ENCFF467XNL.bigBed bigBed (peaks) 2.5 MB
ENCFF472QLC.bigWig bigWig (minus strand signal of unique reads) 12.8 MB
ENCFF487KVA.bigWig bigWig (minus strand signal of unique reads) 13.1 MB
ENCFF584QHX.bed bed (peaks) 1020.6 KB
ENCFF591EQY.bigBed bigBed (peaks) 2.7 MB
ENCFF669BXQ.fastq fastq (reads) 394.3 MB
ENCFF685VYS.bigWig bigWig (plus strand signal of unique reads) 13.5 MB
ENCFF714YUM.bam bam (alignments) 120.0 MB
ENCFF718DYI.fastq fastq (reads) 515.7 MB
ENCFF729RGX.bigBed bigBed (peaks) 682.1 KB
ENCFF735CVF.bigWig bigWig (minus strand signal of unique reads) 5.6 MB
ENCFF744ELJ.bam bam (alignments) 126.2 MB
ENCFF785IRO.bed bed (peaks) 272.8 KB
ENCFF797QRS.bed bed (peaks) 40.7 KB
ENCFF802XHE.fastq fastq (reads) 410.2 MB
ENCFF822NMS.bed bed (peaks) 41.9 KB
ENCFF825UNM.bam bam (alignments) 253.9 MB
ENCFF826KOC.bigBed bigBed (peaks) 1.3 MB
ENCFF839VAS.bigBed bigBed (peaks) 2.5 MB
ENCFF847OFW.bed bed (peaks) 701.8 KB
ENCFF878OMW.bigBed bigBed (peaks) 1.6 MB
ENCFF911SWT.bigWig bigWig (plus strand signal of unique reads) 5.8 MB
ENCFF966QTN.bigWig bigWig (plus strand signal of unique reads) 6.0 MB
ENCFF968WVF.bed bed (peaks) 780.4 KB
ENCFF984LZX.bigBed bigBed (peaks) 1.7 MB
ENCSR484LTQ ENCSR · via encode_api

eCLIP experiment on K562 against NCBP2

Homo sapiens

36 data files
FileTypeSize
ENCFF014NHI.bed bed (peaks) 993.6 KB
ENCFF053VCT.fastq fastq (reads) 516.9 MB
ENCFF098RUK.fastq fastq (reads) 566.0 MB
ENCFF111TGW.bigWig bigWig (minus strand signal of unique reads) 5.0 MB
ENCFF158FEQ.bed bed (peaks) 533.2 KB
ENCFF173HHG.bigWig bigWig (minus strand signal of unique reads) 5.3 MB
ENCFF205RFL.fastq fastq (reads) 556.5 MB
ENCFF262QZT.bed bed (peaks) 713.0 KB
ENCFF295NIL.bigBed bigBed (peaks) 413.7 KB
ENCFF308LKS.bam bam (alignments) 176.5 MB
ENCFF312MQE.bed bed (peaks) 526.0 KB
ENCFF341TZE.bigWig bigWig (plus strand signal of unique reads) 5.3 MB
ENCFF354UQN.bigBed bigBed (peaks) 1.7 MB
ENCFF356ZTW.bigBed bigBed (peaks) 1.3 MB
ENCFF446AIP.bigWig bigWig (plus strand signal of unique reads) 11.1 MB
ENCFF481RZR.bed bed (peaks) 9.8 KB
ENCFF509XPD.bed bed (peaks) 747.1 KB
ENCFF515CKZ.bigWig bigWig (plus strand signal of unique reads) 11.5 MB
ENCFF608TLJ.fastq fastq (reads) 606.1 MB
ENCFF614IHL.bigWig bigWig (plus strand signal of unique reads) 5.5 MB
ENCFF615LVG.bigBed bigBed (peaks) 1.0 MB
ENCFF683ATR.bed bed (peaks) 967.2 KB
ENCFF694ETT.bigBed bigBed (peaks) 2.1 MB
ENCFF733DLE.bed bed (peaks) 184.5 KB
ENCFF746QXA.bigWig bigWig (minus strand signal of unique reads) 10.5 MB
ENCFF747VNU.bigBed bigBed (peaks) 1.3 MB
ENCFF771UZR.bam bam (alignments) 184.0 MB
ENCFF781FXC.bigBed bigBed (peaks) 1.7 MB
ENCFF809LTM.bigBed bigBed (peaks) 2.1 MB
ENCFF824QNE.bigWig bigWig (minus strand signal of unique reads) 11.0 MB
ENCFF857UAF.bigBed bigBed (peaks) 393.2 KB
ENCFF863LLP.bigBed bigBed (peaks) 1.0 MB
ENCFF886MLH.bed bed (peaks) 9.7 KB
ENCFF891QNV.bam bam (alignments) 104.9 MB
ENCFF913QVA.bam bam (alignments) 98.7 MB
ENCFF994KXG.bed bed (peaks) 194.4 KB
ENCSR712IAG ENCSR · via encode_api

eCLIP experiment on K562 against ZC3H11A

Homo sapiens

30 data files
FileTypeSize
ENCFF002MQE.bed bed (peaks); assembly: hg19 671.7 KB
ENCFF116JFD.bam bam (alignments); assembly: hg19 126.6 MB
ENCFF176BVT.bigBed bigBed (peaks); assembly: hg19 1.2 MB
ENCFF179UOO.bigBed bigBed (peaks); assembly: hg19 1.7 MB
ENCFF183AXJ.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 15.2 MB
ENCFF251XJT.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 5.9 MB
ENCFF258HOX.bed bed (peaks); assembly: GRCh38 27.3 KB
ENCFF275YSU.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 15.6 MB
ENCFF288IBH.bed bed (peaks); assembly: GRCh38 954.9 KB
ENCFF310KBC.bed bed (peaks); assembly: hg19 1.5 MB
ENCFF327WXM.bed bed (peaks); assembly: hg19 28.3 KB
ENCFF368SQA.bigBed bigBed (peaks); assembly: hg19 1.4 MB
ENCFF378WQX.fastq fastq (reads) 748.3 MB
ENCFF421XUC.bed bed (peaks); assembly: GRCh38 1.5 MB
ENCFF460TUE.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 6.2 MB
ENCFF462QFK.bam bam (alignments); assembly: hg19 280.8 MB
ENCFF601AWS.bigBed bigBed (peaks); assembly: GRCh38 3.1 MB
ENCFF696WFR.fastq fastq (reads) 496.5 MB
ENCFF709BYW.bam bam (alignments); assembly: GRCh38 120.6 MB
ENCFF715RSI.bam bam (alignments); assembly: GRCh38 270.5 MB
ENCFF716ISC.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 5.7 MB
ENCFF730ZZF.fastq fastq (reads) 538.3 MB
ENCFF733HXI.bigBed bigBed (peaks); assembly: GRCh38 1.7 MB
ENCFF735ZUW.fastq fastq (reads) 683.7 MB
ENCFF771HEF.bigBed bigBed (peaks); assembly: hg19 3.1 MB
ENCFF773UBK.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 6.0 MB
ENCFF849BHF.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 14.7 MB
ENCFF926QBJ.bed bed (peaks); assembly: hg19 628.5 KB
ENCFF929BZH.bed bed (peaks); assembly: hg19 991.4 KB
ENCFF998VWX.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 15.1 MB
ENCSR034VBA ENCSR · via encode_api

RNA-seq on K562 cells treated with an shRNA knockdown against HNRNPUL1. (HNRNPUL1_BGKLV28)

Homo sapiens

92 data files
FileTypeSize
ENCFF008CJJ.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 86.1 MB
ENCFF008URU.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 95.6 MB
ENCFF009MKZ.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 90.2 MB
ENCFF023XBO.bam bam (alignments); assembly: hg19; genome annotation: V19 5.3 GB
ENCFF032BIU.bam bam (alignments); assembly: hg19; genome annotation: V19 8.0 GB
ENCFF038VJB.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 100.9 MB
ENCFF054MZG.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.5 MB
ENCFF063NFO.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 25.0 MB
ENCFF078GFW.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 93.5 MB
ENCFF078PZF.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.7 MB
ENCFF086WFO.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 91.7 MB
ENCFF104YWI.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 91.3 MB
ENCFF132FRD.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 109.7 MB
ENCFF138FZZ.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 4.2 MB
ENCFF162OJP.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 80.4 MB
ENCFF165WHQ.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.9 MB
ENCFF179KDE.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 87.1 MB
ENCFF213MVT.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 99.7 MB
ENCFF225SXO.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 5.1 MB
ENCFF229SNV.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.4 MB
ENCFF241OZK.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 83.1 MB
ENCFF274OSZ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 98.2 MB
ENCFF276YQD.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 111.4 MB
ENCFF295WGJ.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF305RCL.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.0 MB
ENCFF307VSF.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.5 MB
ENCFF312FGA.fastq fastq (reads) 3.5 GB
ENCFF334EZM.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 100.9 MB
ENCFF356HMS.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 95.5 MB
ENCFF375CTE.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF376VHH.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 88.5 MB
ENCFF418KBT.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 79.3 MB
ENCFF432KJL.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 7.1 GB
ENCFF434BTL.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.5 MB
ENCFF435XYN.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 108.1 MB
ENCFF452XLX.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 81.0 MB
ENCFF469OQX.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 89.9 MB
ENCFF471BHK.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 88.0 MB
ENCFF474ERJ.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.4 MB
ENCFF481HXS.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 95.4 MB
ENCFF498JTM.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 98.4 MB
ENCFF503VKN.bam bam (alignments); assembly: hg19; genome annotation: V19 6.6 GB
ENCFF510IKE.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 89.0 MB
ENCFF513BLV.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 89.2 MB
ENCFF519TEU.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 4.1 MB
ENCFF541MOF.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 85.8 MB
ENCFF552SMO.bam bam (alignments); assembly: hg19; genome annotation: V19 6.6 GB
ENCFF564DJH.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 82.2 MB
ENCFF567GPS.bam bam (alignments); assembly: GRCh38; genome annotation: V29 8.2 GB
ENCFF572WXF.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 77.1 MB
ENCFF578IEY.bam bam (alignments); assembly: GRCh38; genome annotation: V29 6.7 GB
ENCFF583HSP.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 84.0 MB
ENCFF585EEM.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 87.8 MB
ENCFF589UMH.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 96.9 MB
ENCFF594HYP.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF595MOA.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 88.6 MB
ENCFF647AQZ.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 111.2 MB
ENCFF648ZHT.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 93.9 MB
ENCFF650KOW.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.9 MB
ENCFF650THJ.bam bam (alignments); assembly: hg19; genome annotation: V19 6.4 GB
ENCFF656VDI.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 99.7 MB
ENCFF672KBE.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 8.1 GB
ENCFF686UJA.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 9.2 GB
ENCFF699ZOY.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 87.0 MB
ENCFF702ZFG.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 97.9 MB
ENCFF703WDK.bam bam (alignments); assembly: GRCh38; genome annotation: V24 8.2 GB
ENCFF709PEN.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 109.7 MB
ENCFF720UUU.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.4 MB
ENCFF732TBH.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 87.9 MB
ENCFF744NSN.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 99.8 MB
ENCFF752NWG.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 95.8 MB
ENCFF769YLX.bam bam (alignments); assembly: GRCh38; genome annotation: V24 6.7 GB
ENCFF771FXY.fastq fastq (reads) 3.5 GB
ENCFF787GDJ.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF790GXP.fastq fastq (reads) 4.4 GB
ENCFF795GIJ.bam bam (alignments); assembly: GRCh38; genome annotation: V24 6.7 GB
ENCFF836HER.bam bam (alignments); assembly: hg19; genome annotation: V19 5.4 GB
ENCFF863HSY.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 7.2 GB
ENCFF875LLA.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 99.5 MB
ENCFF880KVC.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 16.6 MB
ENCFF884SIG.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.6 MB
ENCFF903WQO.fastq fastq (reads) 4.4 GB
ENCFF913OYW.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 9.3 GB
ENCFF914UBT.bam bam (alignments); assembly: GRCh38; genome annotation: V24 5.5 GB
ENCFF917GOI.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 89.4 MB
ENCFF918EQC.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 86.6 MB
ENCFF928RAM.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 5.7 MB
ENCFF953KEN.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 109.9 MB
ENCFF970CPX.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 97.6 MB
ENCFF975WMM.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 10.5 GB
ENCFF982LNH.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 90.1 MB
ENCFF993RYQ.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCSR643UFV ENCSR · via encode_api

RNA-seq on HepG2 cells treated with an shRNA knockdown against NOL12. (NOL12-BGHLV23)

Homo sapiens

92 data files
FileTypeSize
ENCFF030NYL.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 74.5 MB
ENCFF051TNX.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 17.8 MB
ENCFF063ULY.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 83.5 MB
ENCFF064HZU.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 72.1 MB
ENCFF065GIE.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 72.6 MB
ENCFF071SCO.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 77.4 MB
ENCFF080RUN.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 75.5 MB
ENCFF081ITU.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 76.3 MB
ENCFF084JVW.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 81.6 MB
ENCFF093IUF.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 90.2 MB
ENCFF101SYM.bam bam (alignments); assembly: GRCh38; genome annotation: V29 5.7 GB
ENCFF111NBR.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 6.4 GB
ENCFF139OGV.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 78.1 MB
ENCFF169GHO.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 77.7 MB
ENCFF180SRI.bam bam (alignments); assembly: GRCh38; genome annotation: V29 5.7 GB
ENCFF183FQJ.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 76.0 MB
ENCFF188QPQ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 80.7 MB
ENCFF195UDU.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.5 MB
ENCFF203CAH.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 70.0 MB
ENCFF208BPX.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF232YAZ.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF237MCF.bam bam (alignments); assembly: GRCh38; genome annotation: V24 5.7 GB
ENCFF240KYN.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 5.6 MB
ENCFF257ZDX.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 91.7 MB
ENCFF263GAQ.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF269NJH.fastq fastq (reads) 2.9 GB
ENCFF272ZAQ.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 87.1 MB
ENCFF277NIF.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 81.3 MB
ENCFF282IOV.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.7 MB
ENCFF291CZG.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF294KTG.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 6.6 GB
ENCFF298LIT.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 78.6 MB
ENCFF301HEC.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 72.1 MB
ENCFF329LUC.bam bam (alignments); assembly: hg19; genome annotation: V19 4.7 GB
ENCFF334PNY.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 90.8 MB
ENCFF340GLA.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 87.1 MB
ENCFF348XPZ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 74.6 MB
ENCFF356GAZ.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 90.7 MB
ENCFF360CXQ.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 7.3 GB
ENCFF373SIV.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 79.4 MB
ENCFF392VKK.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 6.6 GB
ENCFF421WCX.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 84.5 MB
ENCFF430XBI.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 71.9 MB
ENCFF441WZF.bam bam (alignments); assembly: hg19; genome annotation: V19 4.7 GB
ENCFF443TYD.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF453VAW.bam bam (alignments); assembly: hg19; genome annotation: V19 4.6 GB
ENCFF466PAF.bam bam (alignments); assembly: hg19; genome annotation: V19 5.4 GB
ENCFF474DRN.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 77.8 MB
ENCFF522KUP.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 79.7 MB
ENCFF531UPT.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.0 MB
ENCFF534XGB.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 88.7 MB
ENCFF571CPY.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF576YWC.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 83.6 MB
ENCFF585CWA.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 74.1 MB
ENCFF585FUP.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 79.4 MB
ENCFF590KHO.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.9 MB
ENCFF602EHU.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 3.6 MB
ENCFF604PWL.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 73.9 MB
ENCFF620ZHD.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 82.2 MB
ENCFF621ETH.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 81.4 MB
ENCFF623XFP.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF624VLQ.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 81.0 MB
ENCFF652EJL.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 92.4 MB
ENCFF653KXT.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 6.4 GB
ENCFF655ZFP.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 78.0 MB
ENCFF704HFW.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 83.3 MB
ENCFF704QWO.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.3 MB
ENCFF709OYR.bam bam (alignments); assembly: GRCh38; genome annotation: V24 5.7 GB
ENCFF712NRB.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 86.0 MB
ENCFF723IIA.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 4.6 MB
ENCFF757DFP.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.4 MB
ENCFF775QGQ.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.8 GB
ENCFF787BPX.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 92.4 MB
ENCFF798YGI.fastq fastq (reads) 2.9 GB
ENCFF800BSN.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 88.7 MB
ENCFF804OJH.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 79.5 MB
ENCFF806ZKL.bam bam (alignments); assembly: hg19; genome annotation: V19 5.5 GB
ENCFF846JXP.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF859AAX.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.5 MB
ENCFF871BWY.bam bam (alignments); assembly: hg19; genome annotation: V19 4.6 GB
ENCFF874FUL.fastq fastq (reads) 2.8 GB
ENCFF888SHG.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 78.1 MB
ENCFF897RLX.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 4.4 MB
ENCFF913WXJ.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 87.4 MB
ENCFF914QEW.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 76.4 MB
ENCFF917ALB.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF920XND.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 7.1 GB
ENCFF926ENE.fastq fastq (reads) 3.0 GB
ENCFF934JPR.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.8 GB
ENCFF935JFA.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 80.1 MB
ENCFF949FZP.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 77.7 MB
ENCFF960AJW.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCSR398HXV ENCSR · via encode_api

shRNA knockdown against NONO in K562 cells followed by RNA-seq. (NONO_BGKLV19)

Homo sapiens

92 data files
FileTypeSize
ENCFF003JYS.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 69.7 MB
ENCFF015GWF.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF028WZP.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 67.9 MB
ENCFF039XUH.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 68.3 MB
ENCFF045YYP.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.3 MB
ENCFF052JOU.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF058NKA.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF066BTT.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 64.7 MB
ENCFF099HJZ.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.3 MB
ENCFF115WLK.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF118QUJ.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF122SOI.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.9 MB
ENCFF128VUP.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 61.8 MB
ENCFF157RAI.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.9 MB
ENCFF165HBY.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 78.3 MB
ENCFF165KBZ.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 66.3 MB
ENCFF190LAA.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF198CMJ.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 70.7 MB
ENCFF202WDU.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 57.1 MB
ENCFF214OJP.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 68.4 MB
ENCFF224UEU.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 3.4 MB
ENCFF228ZJZ.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 71.8 MB
ENCFF229FIW.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.7 MB
ENCFF248MZR.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 76.8 MB
ENCFF250XAW.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 79.2 MB
ENCFF250ZAN.bam bam (alignments); assembly: GRCh38; genome annotation: V29 3.8 GB
ENCFF267KXL.fastq fastq (reads) 2.3 GB
ENCFF280NQA.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 60.1 MB
ENCFF324CAX.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 60.7 MB
ENCFF329GND.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF332FTS.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 5.0 GB
ENCFF338GSN.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 61.8 MB
ENCFF351XXC.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.2 GB
ENCFF357DDV.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 55.7 MB
ENCFF367KMV.bam bam (alignments); assembly: GRCh38; genome annotation: V29 4.2 GB
ENCFF380OYY.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.8 GB
ENCFF407GGR.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 61.8 MB
ENCFF414XFA.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 60.7 MB
ENCFF441HSA.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 78.2 MB
ENCFF451IYU.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF458YTV.bam bam (alignments); assembly: hg19; genome annotation: V19 3.1 GB
ENCFF467RJQ.bam bam (alignments); assembly: hg19; genome annotation: V19 3.4 GB
ENCFF473LQQ.bam bam (alignments); assembly: hg19; genome annotation: V19 3.4 GB
ENCFF475CBJ.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 70.5 MB
ENCFF494SJA.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 67.1 MB
ENCFF507KCS.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 60.9 MB
ENCFF526VVJ.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 68.1 MB
ENCFF527UBL.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 58.5 MB
ENCFF540UIX.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.2 GB
ENCFF542JNI.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 5.0 GB
ENCFF558IXW.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF574PFZ.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF583LQJ.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 61.0 MB
ENCFF590UWC.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 57.1 MB
ENCFF591QVO.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 64.9 MB
ENCFF592KYD.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 59.7 MB
ENCFF597PKQ.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF600XRK.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.5 GB
ENCFF646VRQ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 64.1 MB
ENCFF662LDE.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 69.2 MB
ENCFF671UWT.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 62.3 MB
ENCFF683ORS.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF687USH.bam bam (alignments); assembly: hg19; genome annotation: V19 4.1 GB
ENCFF695LVY.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 79.3 MB
ENCFF698XHG.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 59.3 MB
ENCFF704YKQ.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 57.7 MB
ENCFF711KMS.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 69.6 MB
ENCFF725RTN.fastq fastq (reads) 2.0 GB
ENCFF733OPY.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 14.8 MB
ENCFF740AZT.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 66.3 MB
ENCFF764PPW.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 4.8 GB
ENCFF771CKJ.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 5.5 MB
ENCFF800RGS.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 4.8 GB
ENCFF802XVR.bam bam (alignments); assembly: hg19; genome annotation: V19 3.7 GB
ENCFF805TCI.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 71.1 MB
ENCFF808RHY.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 61.4 MB
ENCFF820UHX.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 4.2 MB
ENCFF830NTB.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 56.5 MB
ENCFF831GJM.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 67.4 MB
ENCFF844AFL.fastq fastq (reads) 2.1 GB
ENCFF859ILH.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 5.7 GB
ENCFF892WSA.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 68.0 MB
ENCFF903AKL.fastq fastq (reads) 2.1 GB
ENCFF907DGY.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 69.9 MB
ENCFF922VKT.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 3.9 MB
ENCFF934FSJ.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 66.5 MB
ENCFF948JDA.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 67.0 MB
ENCFF965WBP.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 77.8 MB
ENCFF966ECH.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 62.8 MB
ENCFF966HUH.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 70.2 MB
ENCFF979TLK.bam bam (alignments); assembly: hg19; genome annotation: V19 3.1 GB
ENCFF995KRO.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 5.4 GB
ENCSR807ODB ENCSR · via encode_api

RNA-seq on HepG2 cells treated with an shRNA knockdown against AKAP8L. (AKAP8L_BGHLV31)

Homo sapiens

92 data files
FileTypeSize
ENCFF005JCZ.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.4 MB
ENCFF009NEP.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF012UTC.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 5.6 MB
ENCFF016MRZ.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.0 MB
ENCFF021TLE.fastq fastq (reads) 2.2 GB
ENCFF028IGH.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 5.3 GB
ENCFF029PWY.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 83.5 MB
ENCFF034IFN.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 92.4 MB
ENCFF036UMH.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 84.4 MB
ENCFF044PXS.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 96.3 MB
ENCFF047MGE.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 84.7 MB
ENCFF051WSC.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF057BFM.bam bam (alignments); assembly: hg19; genome annotation: V19 3.2 GB
ENCFF066BRR.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 82.5 MB
ENCFF074TCY.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 87.2 MB
ENCFF083EWU.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 83.1 MB
ENCFF096LNJ.fastq fastq (reads) 2.1 GB
ENCFF115RNQ.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 86.2 MB
ENCFF116RYG.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.4 MB
ENCFF117SPN.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 83.5 MB
ENCFF126FKX.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 5.3 GB
ENCFF134LAD.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 84.8 MB
ENCFF144ULK.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 83.8 MB
ENCFF162NVF.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.3 GB
ENCFF163OUK.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.8 GB
ENCFF195QQM.fastq fastq (reads) 2.2 GB
ENCFF197WCU.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 4.1 MB
ENCFF205ECQ.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF213PXQ.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 75.9 MB
ENCFF214IID.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 80.3 MB
ENCFF248IAP.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 85.5 MB
ENCFF260JQP.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 94.8 MB
ENCFF277IIC.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.5 MB
ENCFF296CXB.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF296TLE.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 3.4 MB
ENCFF300AZX.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF305SIM.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 94.8 MB
ENCFF308YWZ.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF311NRR.bam bam (alignments); assembly: GRCh38; genome annotation: V29 3.8 GB
ENCFF343ZYF.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF344HVO.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 17.2 MB
ENCFF377DAR.bam bam (alignments); assembly: hg19; genome annotation: V19 3.2 GB
ENCFF388GRY.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 85.8 MB
ENCFF395EFW.bam bam (alignments); assembly: GRCh38; genome annotation: V29 4.1 GB
ENCFF405ALD.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 93.9 MB
ENCFF418ABQ.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 80.0 MB
ENCFF421BJK.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.7 MB
ENCFF425ZET.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 96.3 MB
ENCFF442ODH.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 83.5 MB
ENCFF442ZGP.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 78.8 MB
ENCFF443RTY.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 82.0 MB
ENCFF492NQP.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.5 MB
ENCFF493PPM.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 85.4 MB
ENCFF494OBM.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 77.2 MB
ENCFF525XPE.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 92.5 MB
ENCFF532SNU.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 88.0 MB
ENCFF553MXJ.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 6.1 GB
ENCFF553QIO.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 86.3 MB
ENCFF556IOT.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 92.4 MB
ENCFF580IHC.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 83.5 MB
ENCFF580LCN.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 85.7 MB
ENCFF609GMI.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.1 GB
ENCFF627EKM.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 83.1 MB
ENCFF653ERS.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 85.4 MB
ENCFF658PCW.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 85.3 MB
ENCFF685AFC.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.9 MB
ENCFF701WJO.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 79.8 MB
ENCFF708OLL.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 5.0 GB
ENCFF713IHI.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 5.1 GB
ENCFF722ZTS.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.1 GB
ENCFF730QVV.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 78.2 MB
ENCFF736GRS.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 82.9 MB
ENCFF738PDK.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 93.8 MB
ENCFF754BCQ.bam bam (alignments); assembly: hg19; genome annotation: V19 3.0 GB
ENCFF763NYB.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF773NTU.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF788WUX.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 5.8 GB
ENCFF803IYV.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 81.9 MB
ENCFF815PIN.bam bam (alignments); assembly: hg19; genome annotation: V19 3.0 GB
ENCFF821MRG.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF821UVY.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 85.7 MB
ENCFF824FVD.fastq fastq (reads) 2.3 GB
ENCFF829MEL.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 79.6 MB
ENCFF837WMD.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 78.0 MB
ENCFF848ZDV.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 4.4 MB
ENCFF859HYF.bam bam (alignments); assembly: hg19; genome annotation: V19 3.7 GB
ENCFF881FYF.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 82.6 MB
ENCFF935CVO.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 93.9 MB
ENCFF953NJG.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 92.5 MB
ENCFF963ZJZ.bam bam (alignments); assembly: hg19; genome annotation: V19 3.9 GB
ENCFF982VOQ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 81.1 MB
ENCFF996DNS.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 93.9 MB
ENCSR331MIC ENCSR · via encode_api

eCLIP experiment on HepG2 against SF3A3

Homo sapiens

36 data files
FileTypeSize
ENCFF052UWH.bigBed bigBed (peaks) 2.0 MB
ENCFF075FPZ.bed bed (peaks) 795.4 KB
ENCFF085GEZ.bigBed bigBed (peaks) 2.0 MB
ENCFF089XNW.bed bed (peaks) 550.6 KB
ENCFF092NFG.bigWig bigWig (minus strand signal of unique reads) 7.1 MB
ENCFF116IRJ.bigBed bigBed (peaks) 1.0 MB
ENCFF130FUM.bigWig bigWig (plus strand signal of unique reads) 7.6 MB
ENCFF207WMH.bigBed bigBed (peaks) 1.6 MB
ENCFF231UPL.bam bam (alignments) 180.5 MB
ENCFF271SHM.bigBed bigBed (peaks) 498.9 KB
ENCFF274KBX.bigBed bigBed (peaks) 1.4 MB
ENCFF318QPN.fastq fastq (reads) 263.4 MB
ENCFF358LEO.fastq fastq (reads) 314.7 MB
ENCFF410PJY.bam bam (alignments) 174.4 MB
ENCFF444WDD.bigWig bigWig (minus strand signal of unique reads) 7.3 MB
ENCFF466AZB.bigBed bigBed (peaks) 483.5 KB
ENCFF485CDT.bigBed bigBed (peaks) 1.0 MB
ENCFF506HBD.bed bed (peaks) 195.5 KB
ENCFF507QFP.fastq fastq (reads) 305.0 MB
ENCFF515JTZ.bed bed (peaks) 771.7 KB
ENCFF554ZOU.bigWig bigWig (plus strand signal of unique reads) 8.5 MB
ENCFF560LTF.bigWig bigWig (minus strand signal of unique reads) 11.0 MB
ENCFF595XZB.bigWig bigWig (plus strand signal of unique reads) 11.4 MB
ENCFF600LVO.bigWig bigWig (minus strand signal of unique reads) 8.3 MB
ENCFF642VTG.bed bed (peaks) 907.2 KB
ENCFF647LHK.bigBed bigBed (peaks) 1.4 MB
ENCFF654YLH.bed bed (peaks) 887.4 KB
ENCFF693UEN.bigBed bigBed (peaks) 1.5 MB
ENCFF710LWM.bed bed (peaks) 57.2 KB
ENCFF749UHI.bed bed (peaks) 529.6 KB
ENCFF807GZY.bam bam (alignments) 136.8 MB
ENCFF912RGT.bed bed (peaks) 201.5 KB
ENCFF912UMI.fastq fastq (reads) 263.7 MB
ENCFF936CMP.bigWig bigWig (plus strand signal of unique reads) 7.4 MB
ENCFF950VZO.bed bed (peaks) 54.0 KB
ENCFF955MLC.bam bam (alignments) 143.4 MB
ENCSR489ABS ENCSR · via encode_api

eCLIP experiment on HepG2 against RBM5

Homo sapiens

30 data files
FileTypeSize
ENCFF068IRI.fastq fastq (reads) 678.0 MB
ENCFF176RGG.bed bed (peaks) 2.2 MB
ENCFF184RSE.bam bam (alignments) 430.1 MB
ENCFF209OHP.bigWig bigWig (plus strand signal of unique reads) 24.4 MB
ENCFF253SAE.fastq fastq (reads) 570.0 MB
ENCFF322ROL.bed bed (peaks) 538.9 KB
ENCFF341GAH.bigBed bigBed (peaks) 1.0 MB
ENCFF351BIN.bigWig bigWig (minus strand signal of unique reads) 23.4 MB
ENCFF391YUD.fastq fastq (reads) 605.3 MB
ENCFF400CFS.bed bed (peaks) 13.0 KB
ENCFF410IRG.bigWig bigWig (minus strand signal of unique reads) 23.7 MB
ENCFF417ZFM.bigBed bigBed (peaks) 4.1 MB
ENCFF428XPR.bed bed (peaks) 179.2 KB
ENCFF429YOO.bigWig bigWig (plus strand signal of unique reads) 24.3 MB
ENCFF545KJU.bam bam (alignments) 425.3 MB
ENCFF569KEZ.bigBed bigBed (peaks) 4.1 MB
ENCFF625KTJ.bigWig bigWig (plus strand signal of unique reads) 24.2 MB
ENCFF655CVS.bigBed bigBed (peaks) 3.4 MB
ENCFF663GBN.bed bed (peaks) 2.2 MB
ENCFF666BXW.bigWig bigWig (minus strand signal of unique reads) 23.9 MB
ENCFF723LQG.bigWig bigWig (minus strand signal of unique reads) 23.3 MB
ENCFF723UHT.bam bam (alignments) 386.7 MB
ENCFF788RFS.bed bed (peaks) 414.1 KB
ENCFF797BGS.fastq fastq (reads) 620.9 MB
ENCFF854DEQ.bigBed bigBed (peaks) 3.4 MB
ENCFF889SGJ.bigWig bigWig (plus strand signal of unique reads) 24.4 MB
ENCFF927KRA.bed bed (peaks) 13.8 KB
ENCFF949ENR.bam bam (alignments) 391.0 MB
ENCFF980CBO.bed bed (peaks) 2.1 MB
ENCFF998ACW.bed bed (peaks) 2.1 MB
ENCSR268JDD ENCSR · via encode_api

shRNA knockdown against EIF2C1 in K562 cells followed by RNA-seq. (EIF2C1 BGKLV13)

Homo sapiens

92 data files
FileTypeSize
ENCFF013KIZ.bigWig bigWig (minus strand signal of unique reads) 76.3 MB
ENCFF030NYS.bigWig bigWig (minus strand signal of all reads) 81.3 MB
ENCFF032WDB.bigWig bigWig (plus strand signal of all reads) 80.6 MB
ENCFF041WOL.bigWig bigWig (minus strand signal of unique reads) 70.0 MB
ENCFF052FIN.bam bam (alignments) 4.0 GB
ENCFF087GTP.tsv tsv (differential expression quantifications) 2.7 MB
ENCFF116KZF.bigWig bigWig (plus strand signal of all reads) 75.8 MB
ENCFF123EFG.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF123GPY.bam bam (transcriptome alignments) 4.7 GB
ENCFF129HXB.bigWig bigWig (minus strand signal of all reads) 81.4 MB
ENCFF136KSH.bigWig bigWig (plus strand signal of all reads) 86.7 MB
ENCFF137KOG.bam bam (transcriptome alignments) 4.3 GB
ENCFF155BGM.bigWig bigWig (minus strand signal of unique reads) 62.8 MB
ENCFF166UBQ.tar tar (differential splicing quantifications) 3.1 MB
ENCFF171SGI.bigWig bigWig (plus strand signal of unique reads) 70.0 MB
ENCFF175KWA.bam bam (alignments) 3.3 GB
ENCFF186SHK.tsv tsv (transcript quantifications) 25.3 MB
ENCFF188VJV.bigWig bigWig (minus strand signal of all reads) 79.7 MB
ENCFF234SBD.bigWig bigWig (minus strand signal of all reads) 68.8 MB
ENCFF244QXH.bam bam (alignments) 3.3 GB
ENCFF259SCX.fastq fastq (reads) 1.9 GB
ENCFF261BIW.tsv tsv (gene quantifications) 9.1 MB
ENCFF281KMZ.bigWig bigWig (plus strand signal of all reads) 79.9 MB
ENCFF287OWY.tsv tsv (gene quantifications) 9.4 MB
ENCFF297AST.bigWig bigWig (minus strand signal of unique reads) 77.1 MB
ENCFF298LID.bigWig bigWig (plus strand signal of all reads) 89.2 MB
ENCFF319TXV.bigWig bigWig (plus strand signal of unique reads) 75.0 MB
ENCFF323NIJ.bigWig bigWig (plus strand signal of all reads) 74.4 MB
ENCFF356RFG.tsv tsv (transcript quantifications) 25.3 MB
ENCFF366KYQ.bigWig bigWig (minus strand signal of all reads) 73.5 MB
ENCFF370NPF.tar tar (differential splicing quantifications) 13.3 MB
ENCFF374CHX.tsv tsv (transcript quantifications) 29.8 MB
ENCFF379QMM.bam bam (alignments) 4.0 GB
ENCFF379RHA.bigWig bigWig (plus strand signal of unique reads) 78.9 MB
ENCFF382AYV.tsv tsv (differential expression quantifications) 4.1 MB
ENCFF387LOX.bigWig bigWig (plus strand signal of all reads) 74.2 MB
ENCFF394NTT.bigWig bigWig (minus strand signal of all reads) 79.9 MB
ENCFF426YEL.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF440LZP.bigWig bigWig (minus strand signal of unique reads) 70.7 MB
ENCFF450IAK.bam bam (alignments) 3.6 GB
ENCFF467DWI.bam bam (alignments) 3.0 GB
ENCFF486EWI.tsv tsv (transcript quantifications) 27.2 MB
ENCFF493BJY.bigWig bigWig (minus strand signal of unique reads) 68.2 MB
ENCFF497KTV.tsv tsv (gene quantifications) 10.4 MB
ENCFF498DRZ.bigWig bigWig (minus strand signal of unique reads) 73.3 MB
ENCFF509YQI.bam bam (alignments) 3.1 GB
ENCFF521YJN.fastq fastq (reads) 2.0 GB
ENCFF545YOT.bam bam (transcriptome alignments) 4.3 GB
ENCFF547VUN.bigWig bigWig (plus strand signal of unique reads) 71.5 MB
ENCFF562HPF.bigWig bigWig (minus strand signal of unique reads) 67.0 MB
ENCFF571ZWT.bigWig bigWig (plus strand signal of all reads) 81.2 MB
ENCFF575EZY.bam bam (alignments) 3.7 GB
ENCFF584SUP.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF586RRG.bigWig bigWig (plus strand signal of all reads) 88.6 MB
ENCFF595HIG.bigWig bigWig (minus strand signal of all reads) 73.2 MB
ENCFF601ZFF.bigWig bigWig (minus strand signal of all reads) 87.6 MB
ENCFF609SFC.bam bam (transcriptome alignments) 4.2 GB
ENCFF613BRT.tsv tsv (transcript quantifications) 29.8 MB
ENCFF616WZW.tsv tsv (gene quantifications) 9.1 MB
ENCFF617UZR.tsv tsv (gene quantifications) 10.4 MB
ENCFF632WLE.bigWig bigWig (minus strand signal of all reads) 79.0 MB
ENCFF636MJT.tsv tsv (gene quantifications) 9.4 MB
ENCFF643PET.bam bam (alignments) 3.3 GB
ENCFF644SSY.bigWig bigWig (plus strand signal of unique reads) 68.5 MB
ENCFF650VKT.fastq fastq (reads) 1.9 GB
ENCFF653PZL.bam bam (alignments) 3.0 GB
ENCFF709SMH.bam bam (transcriptome alignments) 4.9 GB
ENCFF717DUP.bigWig bigWig (plus strand signal of unique reads) 72.1 MB
ENCFF734CJT.bigWig bigWig (plus strand signal of unique reads) 78.0 MB
ENCFF744LWX.bigWig bigWig (plus strand signal of unique reads) 68.3 MB
ENCFF745LKM.bigWig bigWig (plus strand signal of all reads) 79.0 MB
ENCFF752FVF.bigWig bigWig (minus strand signal of all reads) 74.6 MB
ENCFF752NXK.tar tar (differential splicing quantifications) 3.5 MB
ENCFF753WMF.fastq fastq (reads) 2.1 GB
ENCFF772LSZ.tsv tsv (transcript quantifications) 24.9 MB
ENCFF773FSL.bigWig bigWig (plus strand signal of all reads) 69.8 MB
ENCFF790BRO.bam bam (transcriptome alignments) 4.2 GB
ENCFF798OYJ.bigWig bigWig (minus strand signal of all reads) 87.3 MB
ENCFF802NJZ.tsv tsv (transcript quantifications) 27.3 MB
ENCFF821MAJ.bigWig bigWig (plus strand signal of unique reads) 64.3 MB
ENCFF823CEN.bigWig bigWig (minus strand signal of unique reads) 66.9 MB
ENCFF865QPB.bigWig bigWig (minus strand signal of unique reads) 73.2 MB
ENCFF879CTV.bigWig bigWig (plus strand signal of all reads) 80.6 MB
ENCFF880VDM.tsv tsv (transcript quantifications) 24.9 MB
ENCFF914JNA.bigWig bigWig (plus strand signal of unique reads) 74.8 MB
ENCFF919WVX.bigWig bigWig (minus strand signal of unique reads) 76.7 MB
ENCFF938ZOK.bam bam (alignments) 3.7 GB
ENCFF958XIO.bigWig bigWig (plus strand signal of unique reads) 71.2 MB
ENCFF958XZP.bigWig bigWig (minus strand signal of all reads) 88.2 MB
ENCFF987UXM.bigWig bigWig (plus strand signal of unique reads) 78.4 MB
ENCFF989WTK.bam bam (alignments) 3.8 GB
ENCFF994NPL.bigWig bigWig (minus strand signal of unique reads) 69.8 MB
ENCSR003EKR ENCSR · via encode_api

Control shRNA against no target in HepG2 cells followed by RNA-seq. (NT BGHLV14 1)

Homo sapiens

84 data files
FileTypeSize
ENCFF023CBM.tsv tsv (transcript quantifications) 24.9 MB
ENCFF038GOX.bigWig bigWig (plus strand signal of all reads) 67.0 MB
ENCFF057JNE.bam bam (alignments) 3.3 GB
ENCFF061YEG.bigWig bigWig (minus strand signal of unique reads) 63.4 MB
ENCFF069ZSD.tsv tsv (gene quantifications) 9.4 MB
ENCFF080FFY.bam bam (alignments) 3.1 GB
ENCFF098BGW.bigWig bigWig (minus strand signal of unique reads) 63.1 MB
ENCFF112ERJ.bigWig bigWig (minus strand signal of unique reads) 58.0 MB
ENCFF134CFH.bigWig bigWig (minus strand signal of unique reads) 58.2 MB
ENCFF153LBT.bam bam (alignments) 3.1 GB
ENCFF167DUM.bigWig bigWig (plus strand signal of unique reads) 57.1 MB
ENCFF210CWF.bigWig bigWig (minus strand signal of unique reads) 63.1 MB
ENCFF219DWW.bigWig bigWig (minus strand signal of unique reads) 61.7 MB
ENCFF237FMK.tsv tsv (gene quantifications) 10.4 MB
ENCFF239XGL.bigWig bigWig (plus strand signal of unique reads) 64.9 MB
ENCFF246VXB.bigWig bigWig (minus strand signal of all reads) 65.6 MB
ENCFF257PRU.bigWig bigWig (plus strand signal of unique reads) 60.4 MB
ENCFF266MHP.tsv tsv (gene quantifications) 9.1 MB
ENCFF269WRY.bigWig bigWig (minus strand signal of all reads) 63.4 MB
ENCFF281WMY.bigWig bigWig (plus strand signal of unique reads) 62.8 MB
ENCFF289IFX.tsv tsv (gene quantifications) 9.4 MB
ENCFF294SKR.bam bam (alignments) 3.7 GB
ENCFF295XAK.bigWig bigWig (plus strand signal of unique reads) 59.6 MB
ENCFF307YSL.fastq fastq (reads) 2.0 GB
ENCFF312PEY.bigWig bigWig (plus strand signal of all reads) 69.3 MB
ENCFF320XDK.bigWig bigWig (minus strand signal of all reads) 62.4 MB
ENCFF321TCX.bigWig bigWig (minus strand signal of all reads) 59.2 MB
ENCFF333TUM.tsv tsv (transcript quantifications) 25.3 MB
ENCFF336IHI.bigWig bigWig (minus strand signal of all reads) 71.1 MB
ENCFF376QUO.bam bam (transcriptome alignments) 4.6 GB
ENCFF377VDN.bigWig bigWig (minus strand signal of all reads) 61.7 MB
ENCFF383BBD.bam bam (alignments) 3.8 GB
ENCFF383QRK.bam bam (alignments) 2.8 GB
ENCFF396RVP.tsv tsv (transcript quantifications) 29.8 MB
ENCFF405OAS.bigWig bigWig (minus strand signal of unique reads) 55.5 MB
ENCFF409JQD.fastq fastq (reads) 1.8 GB
ENCFF436GKH.bigWig bigWig (plus strand signal of unique reads) 63.0 MB
ENCFF439MVD.bigWig bigWig (plus strand signal of all reads) 63.5 MB
ENCFF471NCG.tsv tsv (transcript quantifications) 25.3 MB
ENCFF473OOC.bam bam (transcriptome alignments) 4.7 GB
ENCFF484DUI.bigWig bigWig (plus strand signal of all reads) 69.4 MB
ENCFF501BES.bigWig bigWig (plus strand signal of all reads) 60.4 MB
ENCFF502LDX.tsv tsv (transcript quantifications) 27.3 MB
ENCFF510FRX.fastq fastq (reads) 1.8 GB
ENCFF532OEA.bigWig bigWig (minus strand signal of unique reads) 61.3 MB
ENCFF537WYZ.bigWig bigWig (plus strand signal of unique reads) 64.8 MB
ENCFF545BIP.tsv tsv (gene quantifications) 10.4 MB
ENCFF569UXE.bigWig bigWig (plus strand signal of all reads) 72.3 MB
ENCFF574REP.bam bam (alignments) 3.8 GB
ENCFF580PSU.bam bam (transcriptome alignments) 4.1 GB
ENCFF591SER.bigWig bigWig (minus strand signal of unique reads) 61.1 MB
ENCFF634PNP.bigWig bigWig (plus strand signal of unique reads) 62.4 MB
ENCFF652HRH.bigWig bigWig (minus strand signal of all reads) 68.2 MB
ENCFF670AXP.bam bam (alignments) 3.7 GB
ENCFF677UUJ.bigWig bigWig (minus strand signal of unique reads) 58.7 MB
ENCFF681EKW.bigWig bigWig (plus strand signal of all reads) 71.6 MB
ENCFF696WYL.bigWig bigWig (plus strand signal of all reads) 62.9 MB
ENCFF712XJM.bam bam (alignments) 3.1 GB
ENCFF722ZYA.bam bam (transcriptome alignments) 4.7 GB
ENCFF735HWG.bigWig bigWig (minus strand signal of all reads) 71.1 MB
ENCFF738AOI.bigWig bigWig (plus strand signal of all reads) 72.3 MB
ENCFF773MJP.bigWig bigWig (plus strand signal of all reads) 64.7 MB
ENCFF793EKK.bigWig bigWig (minus strand signal of all reads) 68.0 MB
ENCFF801FQV.tsv tsv (transcript quantifications) 27.3 MB
ENCFF804VRA.bigWig bigWig (plus strand signal of all reads) 65.2 MB
ENCFF823EPB.fastq fastq (reads) 2.0 GB
ENCFF824MXO.bigWig bigWig (minus strand signal of unique reads) 60.7 MB
ENCFF836SAE.bigWig bigWig (plus strand signal of unique reads) 65.1 MB
ENCFF849QNH.tsv tsv (gene quantifications) 9.1 MB
ENCFF856YKY.bigWig bigWig (minus strand signal of unique reads) 60.8 MB
ENCFF858DTL.bam bam (alignments) 2.8 GB
ENCFF862JCD.bigWig bigWig (minus strand signal of all reads) 70.4 MB
ENCFF869JUH.bam bam (transcriptome alignments) 5.3 GB
ENCFF872VCS.bam bam (transcriptome alignments) 4.1 GB
ENCFF875NJJ.bigWig bigWig (plus strand signal of all reads) 69.3 MB
ENCFF894WPL.bigWig bigWig (plus strand signal of unique reads) 62.3 MB
ENCFF899EQW.bam bam (alignments) 3.2 GB
ENCFF938QNO.bigWig bigWig (plus strand signal of unique reads) 59.7 MB
ENCFF972HKP.tsv tsv (transcript quantifications) 24.9 MB
ENCFF972WSP.bigWig bigWig (plus strand signal of unique reads) 63.5 MB
ENCFF977IJG.bigWig bigWig (minus strand signal of all reads) 68.0 MB
ENCFF982XEQ.bigWig bigWig (minus strand signal of all reads) 64.1 MB
ENCFF993QZR.tsv tsv (transcript quantifications) 29.8 MB
ENCFF994YDH.bam bam (alignments) 3.7 GB
ENCSR597IYB ENCSR · via encode_api

shRNA knockdown against EXOSC9 in HepG2 cells followed by RNA-seq. (EXOSC9 BGHLV14)

Homo sapiens

92 data files
FileTypeSize
ENCFF005TGD.bigWig bigWig (plus strand signal of unique reads) 70.1 MB
ENCFF032ILU.bigWig bigWig (minus strand signal of unique reads) 65.5 MB
ENCFF044FYO.bigWig bigWig (plus strand signal of unique reads) 74.8 MB
ENCFF076FQK.bam bam (transcriptome alignments) 4.9 GB
ENCFF077TZR.bam bam (alignments) 3.1 GB
ENCFF103NTP.bigWig bigWig (plus strand signal of unique reads) 71.0 MB
ENCFF138MMG.bigWig bigWig (minus strand signal of unique reads) 68.6 MB
ENCFF143CHS.bigWig bigWig (plus strand signal of all reads) 71.3 MB
ENCFF147AGQ.tsv tsv (transcript quantifications) 29.8 MB
ENCFF156GRB.tar tar (differential splicing quantifications) 3.1 MB
ENCFF157DVM.bam bam (transcriptome alignments) 5.2 GB
ENCFF166KVY.bigWig bigWig (plus strand signal of all reads) 66.4 MB
ENCFF172DTK.fastq fastq (reads) 2.0 GB
ENCFF174GHK.tsv tsv (transcript quantifications) 29.8 MB
ENCFF188PEG.bigWig bigWig (plus strand signal of unique reads) 67.8 MB
ENCFF193ZDV.bigWig bigWig (plus strand signal of unique reads) 63.6 MB
ENCFF201NJT.bigWig bigWig (plus strand signal of all reads) 71.1 MB
ENCFF215CEK.bigWig bigWig (minus strand signal of all reads) 74.4 MB
ENCFF216QYB.bam bam (alignments) 3.2 GB
ENCFF225XYA.bam bam (transcriptome alignments) 5.5 GB
ENCFF237KCM.bigWig bigWig (plus strand signal of all reads) 81.7 MB
ENCFF263TDJ.bigWig bigWig (minus strand signal of all reads) 70.0 MB
ENCFF267UTV.bigWig bigWig (plus strand signal of all reads) 81.8 MB
ENCFF272MLJ.bigWig bigWig (minus strand signal of all reads) 80.6 MB
ENCFF274CSJ.bam bam (alignments) 3.8 GB
ENCFF293TZM.bigWig bigWig (plus strand signal of unique reads) 74.8 MB
ENCFF299TQZ.bigWig bigWig (minus strand signal of unique reads) 69.3 MB
ENCFF301ECW.tsv tsv (differential expression quantifications) 1.8 MB
ENCFF315MPB.bigWig bigWig (plus strand signal of unique reads) 70.5 MB
ENCFF318VCD.tsv tsv (transcript quantifications) 24.9 MB
ENCFF349UCT.bam bam (transcriptome alignments) 4.9 GB
ENCFF350EJK.tsv tsv (gene quantifications) 9.1 MB
ENCFF360UCP.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF363NEI.bam bam (alignments) 3.2 GB
ENCFF372YMF.bigWig bigWig (minus strand signal of all reads) 74.8 MB
ENCFF378NIQ.bigWig bigWig (minus strand signal of unique reads) 66.1 MB
ENCFF382GAC.bigWig bigWig (plus strand signal of all reads) 77.8 MB
ENCFF402SKT.bigWig bigWig (minus strand signal of unique reads) 66.2 MB
ENCFF408HRA.tsv tsv (transcript quantifications) 25.3 MB
ENCFF412FWI.bigWig bigWig (plus strand signal of all reads) 81.1 MB
ENCFF417GTS.bigWig bigWig (minus strand signal of all reads) 75.9 MB
ENCFF435JOR.bigWig bigWig (minus strand signal of all reads) 65.2 MB
ENCFF436NKA.bigWig bigWig (minus strand signal of unique reads) 73.2 MB
ENCFF460QLI.bigWig bigWig (plus strand signal of unique reads) 71.0 MB
ENCFF478AIB.bigWig bigWig (plus strand signal of all reads) 76.9 MB
ENCFF479MXS.bigWig bigWig (minus strand signal of all reads) 80.5 MB
ENCFF492TIO.bigWig bigWig (minus strand signal of unique reads) 73.1 MB
ENCFF538WQX.bigWig bigWig (minus strand signal of unique reads) 72.5 MB
ENCFF541HQY.bigWig bigWig (plus strand signal of all reads) 72.8 MB
ENCFF545VDQ.fastq fastq (reads) 2.0 GB
ENCFF557KRM.tsv tsv (gene quantifications) 10.4 MB
ENCFF558OJT.bigWig bigWig (minus strand signal of unique reads) 70.4 MB
ENCFF577GKF.bam bam (alignments) 3.9 GB
ENCFF587SVE.bigWig bigWig (plus strand signal of unique reads) 67.5 MB
ENCFF613CSR.bam bam (alignments) 3.8 GB
ENCFF632PPR.bigWig bigWig (minus strand signal of unique reads) 69.4 MB
ENCFF634AJO.bam bam (transcriptome alignments) 4.6 GB
ENCFF648CDP.tsv tsv (transcript quantifications) 24.9 MB
ENCFF650OJA.bam bam (alignments) 3.3 GB
ENCFF657PHJ.bigWig bigWig (minus strand signal of all reads) 70.0 MB
ENCFF661XBD.bam bam (alignments) 3.2 GB
ENCFF681TYJ.fastq fastq (reads) 2.2 GB
ENCFF683EXE.bam bam (alignments) 3.9 GB
ENCFF685ULA.tsv tsv (transcript quantifications) 27.3 MB
ENCFF687KIM.bigWig bigWig (plus strand signal of unique reads) 74.2 MB
ENCFF703POG.tsv tsv (transcript quantifications) 25.3 MB
ENCFF712MCD.bigWig bigWig (minus strand signal of all reads) 76.6 MB
ENCFF716FMV.tar tar (differential splicing quantifications) 3.5 MB
ENCFF732BPC.tar tar (differential splicing quantifications) 14.7 MB
ENCFF752JRK.bigWig bigWig (plus strand signal of all reads) 76.0 MB
ENCFF777IXK.bigWig bigWig (minus strand signal of all reads) 80.1 MB
ENCFF778LKQ.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF785ACQ.bam bam (transcriptome alignments) 4.6 GB
ENCFF793ZQF.bam bam (alignments) 3.6 GB
ENCFF796KVU.tsv tsv (gene quantifications) 9.1 MB
ENCFF824KEB.tsv tsv (transcript quantifications) 27.3 MB
ENCFF827EHJ.bam bam (alignments) 3.0 GB
ENCFF839ISD.fastq fastq (reads) 2.1 GB
ENCFF840AXC.bigWig bigWig (plus strand signal of all reads) 77.8 MB
ENCFF858OKQ.bigWig bigWig (minus strand signal of unique reads) 68.9 MB
ENCFF876VLO.bam bam (alignments) 3.8 GB
ENCFF877SOM.tsv tsv (differential expression quantifications) 4.1 MB
ENCFF909YDF.bigWig bigWig (plus strand signal of unique reads) 67.2 MB
ENCFF912BYU.bigWig bigWig (minus strand signal of all reads) 71.6 MB
ENCFF946QBR.bigWig bigWig (plus strand signal of all reads) 75.5 MB
ENCFF947RRL.bigWig bigWig (minus strand signal of all reads) 76.6 MB
ENCFF950IFU.tsv tsv (gene quantifications) 9.4 MB
ENCFF955VBD.bigWig bigWig (plus strand signal of unique reads) 72.1 MB
ENCFF968GTX.tsv tsv (differential expression quantifications) 2.6 MB
ENCFF973IKS.bigWig bigWig (minus strand signal of unique reads) 61.9 MB
ENCFF979OEN.tsv tsv (gene quantifications) 10.4 MB
ENCFF990OZZ.tsv tsv (gene quantifications) 9.4 MB
ENCSR325OOM ENCSR · via encode_api

shRNA knockdown against FUS in K562 cells followed by RNA-seq. (FUS BGKLV13)

Homo sapiens

92 data files
FileTypeSize
ENCFF003ZWK.tsv tsv (transcript quantifications) 24.8 MB
ENCFF006DJB.bam bam (alignments) 2.7 GB
ENCFF012MVK.bigWig bigWig (plus strand signal of unique reads) 57.3 MB
ENCFF015GPH.bigWig bigWig (minus strand signal of unique reads) 58.1 MB
ENCFF071RUH.bigWig bigWig (plus strand signal of all reads) 60.9 MB
ENCFF109BDU.tsv tsv (differential expression quantifications) 4.2 MB
ENCFF113WQQ.tsv tsv (gene quantifications) 9.4 MB
ENCFF114KLN.bigWig bigWig (minus strand signal of all reads) 56.2 MB
ENCFF118TGK.tsv tsv (differential expression quantifications) 2.8 MB
ENCFF129QEQ.fastq fastq (reads) 1.4 GB
ENCFF140AGD.bigWig bigWig (minus strand signal of unique reads) 72.0 MB
ENCFF156RTR.bigWig bigWig (plus strand signal of all reads) 65.5 MB
ENCFF204AIO.bigWig bigWig (plus strand signal of all reads) 75.4 MB
ENCFF227UZU.fastq fastq (reads) 2.1 GB
ENCFF228GPG.bigWig bigWig (minus strand signal of unique reads) 75.7 MB
ENCFF237EOV.bam bam (alignments) 2.7 GB
ENCFF244IJS.tsv tsv (transcript quantifications) 25.3 MB
ENCFF257QBP.bam bam (transcriptome alignments) 3.4 GB
ENCFF285JJK.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF290ZPK.tsv tsv (gene quantifications) 9.4 MB
ENCFF296PGZ.bigWig bigWig (plus strand signal of unique reads) 59.3 MB
ENCFF306ANB.tsv tsv (transcript quantifications) 24.9 MB
ENCFF335TPW.bam bam (alignments) 2.3 GB
ENCFF347RKB.bigWig bigWig (minus strand signal of unique reads) 52.2 MB
ENCFF356EAV.bam bam (transcriptome alignments) 4.3 GB
ENCFF360UVB.bigWig bigWig (minus strand signal of all reads) 78.5 MB
ENCFF362QKM.bigWig bigWig (minus strand signal of unique reads) 58.8 MB
ENCFF394MGK.bigWig bigWig (plus strand signal of all reads) 60.6 MB
ENCFF398MLL.bigWig bigWig (plus strand signal of all reads) 88.2 MB
ENCFF408UAZ.bigWig bigWig (minus strand signal of all reads) 66.4 MB
ENCFF415ANM.bam bam (alignments) 3.9 GB
ENCFF415LZO.tsv tsv (transcript quantifications) 27.3 MB
ENCFF419JXX.bigWig bigWig (plus strand signal of unique reads) 77.7 MB
ENCFF422CWP.bigWig bigWig (plus strand signal of all reads) 57.3 MB
ENCFF428OHJ.bigWig bigWig (minus strand signal of all reads) 74.1 MB
ENCFF436IYL.bam bam (alignments) 2.7 GB
ENCFF436OEA.tsv tsv (gene quantifications) 10.4 MB
ENCFF449GZP.tsv tsv (transcript quantifications) 27.2 MB
ENCFF453EMK.tsv tsv (gene quantifications) 9.1 MB
ENCFF458UEN.bam bam (alignments) 3.3 GB
ENCFF465RPJ.bigWig bigWig (plus strand signal of unique reads) 69.8 MB
ENCFF477XHK.tsv tsv (transcript quantifications) 29.8 MB
ENCFF479PCX.bigWig bigWig (minus strand signal of unique reads) 77.0 MB
ENCFF496LUE.tar tar (differential splicing quantifications) 12.9 MB
ENCFF507ULS.bigWig bigWig (minus strand signal of all reads) 87.2 MB
ENCFF551BCM.bigWig bigWig (plus strand signal of all reads) 86.4 MB
ENCFF554LEC.bigWig bigWig (plus strand signal of all reads) 67.2 MB
ENCFF554WGY.bigWig bigWig (minus strand signal of unique reads) 58.5 MB
ENCFF557OTT.tsv tsv (differential expression quantifications) 1.8 MB
ENCFF562ULN.bigWig bigWig (plus strand signal of all reads) 67.2 MB
ENCFF564EFE.bam bam (alignments) 2.3 GB
ENCFF567PBH.tar tar (differential splicing quantifications) 3.2 MB
ENCFF579TYM.bigWig bigWig (minus strand signal of unique reads) 75.9 MB
ENCFF582EZJ.fastq fastq (reads) 2.0 GB
ENCFF589CUA.bigWig bigWig (plus strand signal of all reads) 79.5 MB
ENCFF590ASS.tsv tsv (transcript quantifications) 29.7 MB
ENCFF594NCQ.tsv tsv (gene quantifications) 10.4 MB
ENCFF607HGQ.bigWig bigWig (plus strand signal of all reads) 88.3 MB
ENCFF634OWS.bigWig bigWig (plus strand signal of unique reads) 73.4 MB
ENCFF634RFF.bigWig bigWig (plus strand signal of unique reads) 78.7 MB
ENCFF645WFJ.bigWig bigWig (minus strand signal of all reads) 59.9 MB
ENCFF652TLN.tsv tsv (transcript quantifications) 25.3 MB
ENCFF653BNE.tsv tsv (gene quantifications) 9.1 MB
ENCFF660ZXO.bam bam (transcriptome alignments) 4.8 GB
ENCFF753CMB.bigWig bigWig (minus strand signal of all reads) 85.4 MB
ENCFF756KMA.bigWig bigWig (plus strand signal of unique reads) 56.8 MB
ENCFF771FKI.bam bam (transcriptome alignments) 3.0 GB
ENCFF772EDF.bam bam (transcriptome alignments) 3.0 GB
ENCFF802ZZG.bigWig bigWig (plus strand signal of unique reads) 73.8 MB
ENCFF804OAY.bigWig bigWig (minus strand signal of unique reads) 68.0 MB
ENCFF810YRF.bigWig bigWig (minus strand signal of unique reads) 55.7 MB
ENCFF812YPN.fastq fastq (reads) 1.4 GB
ENCFF815ZFD.bigWig bigWig (minus strand signal of all reads) 64.8 MB
ENCFF816QBO.bigWig bigWig (minus strand signal of all reads) 66.4 MB
ENCFF829EPJ.bam bam (alignments) 3.8 GB
ENCFF830UOX.bigWig bigWig (plus strand signal of all reads) 81.1 MB
ENCFF834VXF.bigWig bigWig (minus strand signal of unique reads) 56.0 MB
ENCFF843YXN.tar tar (differential splicing quantifications) 2.9 MB
ENCFF844SPQ.bam bam (alignments) 3.3 GB
ENCFF859JQD.bam bam (transcriptome alignments) 4.2 GB
ENCFF859QVD.bigWig bigWig (minus strand signal of unique reads) 72.0 MB
ENCFF863XSO.tsv tsv (differential expression quantifications) 5.4 MB
ENCFF867IMK.bigWig bigWig (minus strand signal of all reads) 79.7 MB
ENCFF869GKW.bigWig bigWig (plus strand signal of unique reads) 53.6 MB
ENCFF909EDK.bigWig bigWig (plus strand signal of unique reads) 77.4 MB
ENCFF914UBK.bigWig bigWig (minus strand signal of all reads) 87.2 MB
ENCFF916SMB.bam bam (alignments) 2.3 GB
ENCFF926SMZ.bigWig bigWig (plus strand signal of unique reads) 60.0 MB
ENCFF927GFQ.bam bam (alignments) 3.9 GB
ENCFF978LGH.bigWig bigWig (plus strand signal of unique reads) 59.9 MB
ENCFF983UYL.bam bam (alignments) 3.3 GB
ENCFF987XAZ.bigWig bigWig (minus strand signal of all reads) 59.9 MB
ENCSR328LLU ENCSR · via encode_api

eCLIP experiment on HepG2 against U2AF1

Homo sapiens

36 data files
FileTypeSize
ENCFF021VWK.bed bed (peaks) 23.9 KB
ENCFF056LEW.bed bed (peaks) 25.1 KB
ENCFF059KEP.bam bam (alignments) 433.3 MB
ENCFF062APM.bam bam (alignments) 439.1 MB
ENCFF078SCZ.bed bed (peaks) 2.3 MB
ENCFF083IKP.bigWig bigWig (minus strand signal of unique reads) 28.3 MB
ENCFF084CWF.fastq fastq (reads) 475.6 MB
ENCFF222RBX.fastq fastq (reads) 425.0 MB
ENCFF249GEL.fastq fastq (reads) 340.7 MB
ENCFF249GHN.bed bed (peaks) 893.9 KB
ENCFF295GHA.bed bed (peaks) 2.8 MB
ENCFF318ITR.bam bam (alignments) 540.2 MB
ENCFF329PEQ.bigBed bigBed (peaks) 5.3 MB
ENCFF357MQS.bigBed bigBed (peaks) 4.4 MB
ENCFF473EDU.bigBed bigBed (peaks) 1.9 MB
ENCFF510QAI.bed bed (peaks) 915.8 KB
ENCFF542NOA.bigWig bigWig (plus strand signal of unique reads) 29.2 MB
ENCFF545ZWD.bed bed (peaks) 2.9 MB
ENCFF553KUR.bigWig bigWig (minus strand signal of unique reads) 28.0 MB
ENCFF560DBY.bigBed bigBed (peaks) 649.4 KB
ENCFF569ESD.fastq fastq (reads) 357.4 MB
ENCFF572HVE.bigBed bigBed (peaks) 665.2 KB
ENCFF580XXM.bed bed (peaks) 302.1 KB
ENCFF587MJX.bigBed bigBed (peaks) 3.2 MB
ENCFF600LTQ.bigWig bigWig (plus strand signal of unique reads) 28.9 MB
ENCFF633PBX.bigBed bigBed (peaks) 5.5 MB
ENCFF651VRQ.bigWig bigWig (plus strand signal of unique reads) 23.2 MB
ENCFF755DUB.bam bam (alignments) 546.2 MB
ENCFF769KHX.bed bed (peaks) 2.3 MB
ENCFF811WVR.bigWig bigWig (plus strand signal of unique reads) 23.4 MB
ENCFF831HSA.bigBed bigBed (peaks) 1.6 MB
ENCFF901KXE.bigWig bigWig (minus strand signal of unique reads) 22.7 MB
ENCFF929VHK.bigWig bigWig (minus strand signal of unique reads) 22.5 MB
ENCFF937SDW.bed bed (peaks) 310.0 KB
ENCFF938PRP.bigBed bigBed (peaks) 3.2 MB
ENCFF980HNZ.bigBed bigBed (peaks) 4.4 MB
ENCSR657TZB ENCSR · via encode_api

eCLIP experiment on K562 against XRN2

Homo sapiens

36 data files
FileTypeSize
ENCFF030DDD.bigBed bigBed (peaks) 965.7 KB
ENCFF032DOJ.fastq fastq (reads) 279.4 MB
ENCFF067ZAW.bed bed (peaks) 153.5 KB
ENCFF090XDV.bed bed (peaks) 458.2 KB
ENCFF096SEZ.fastq fastq (reads) 206.0 MB
ENCFF107DSH.fastq fastq (reads) 300.2 MB
ENCFF112LSG.bigBed bigBed (peaks) 2.0 MB
ENCFF123QAQ.bigWig bigWig (plus strand signal of unique reads) 14.4 MB
ENCFF145QGJ.bigWig bigWig (minus strand signal of unique reads) 13.6 MB
ENCFF167DBG.bed bed (peaks) 997.7 KB
ENCFF224NIQ.bigBed bigBed (peaks) 1.7 MB
ENCFF236VEU.bigWig bigWig (plus strand signal of unique reads) 11.7 MB
ENCFF273GAW.bigWig bigWig (plus strand signal of unique reads) 11.9 MB
ENCFF276EIU.bed bed (peaks) 996.4 KB
ENCFF305SDT.bigWig bigWig (plus strand signal of unique reads) 14.2 MB
ENCFF323ABS.bigWig bigWig (minus strand signal of unique reads) 13.5 MB
ENCFF358HNT.bigBed bigBed (peaks) 404.0 KB
ENCFF371PMP.bed bed (peaks) 1.2 MB
ENCFF393URM.bed bed (peaks) 166.0 KB
ENCFF441GJR.bed bed (peaks) 1.2 MB
ENCFF525UQA.bigBed bigBed (peaks) 2.5 MB
ENCFF569CJR.bigBed bigBed (peaks) 423.1 KB
ENCFF630LQE.bam bam (alignments) 184.4 MB
ENCFF679SHX.bigBed bigBed (peaks) 897.9 KB
ENCFF695OLO.bed bed (peaks) 29.4 KB
ENCFF729JHG.bigWig bigWig (minus strand signal of unique reads) 11.2 MB
ENCFF744VLD.bed bed (peaks) 499.9 KB
ENCFF752ZYN.bam bam (alignments) 235.5 MB
ENCFF769RZR.bigWig bigWig (minus strand signal of unique reads) 11.2 MB
ENCFF794JUI.bam bam (alignments) 231.9 MB
ENCFF802LGV.bigBed bigBed (peaks) 2.0 MB
ENCFF808HAX.bigBed bigBed (peaks) 2.5 MB
ENCFF851FUY.bed bed (peaks) 30.6 KB
ENCFF859YFI.bigBed bigBed (peaks) 1.9 MB
ENCFF862IYK.bam bam (alignments) 181.9 MB
ENCFF963JOW.fastq fastq (reads) 192.0 MB
ENCSR143XOT ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) input control experiment of hnRNPH2

1 data file
FileTypeSize
ENCFF753YND.fastq fastq (reads) 412.2 MB
ENCSR081QQH ENCSR · via encode_api

shRNA knockdown against ZRANB2 in HepG2 cells followed by RNA-seq. (ZRANB2 BGHLV14)

Homo sapiens

92 data files
FileTypeSize
ENCFF022ZFY.fastq fastq (reads) 2.3 GB
ENCFF030DAZ.bigWig bigWig (minus strand signal of unique reads) 67.9 MB
ENCFF038FLD.tar tar (differential splicing quantifications) 3.1 MB
ENCFF038HGO.bigWig bigWig (plus strand signal of all reads) 70.9 MB
ENCFF046SOF.bigWig bigWig (plus strand signal of unique reads) 73.0 MB
ENCFF059KUJ.bigWig bigWig (plus strand signal of unique reads) 64.8 MB
ENCFF067OXZ.tar tar (differential splicing quantifications) 3.7 MB
ENCFF072QGX.bam bam (alignments) 4.1 GB
ENCFF079CQI.bigWig bigWig (minus strand signal of all reads) 73.1 MB
ENCFF084WNG.tsv tsv (transcript quantifications) 25.3 MB
ENCFF087NSK.bigWig bigWig (plus strand signal of unique reads) 71.1 MB
ENCFF088IXV.tsv tsv (transcript quantifications) 24.9 MB
ENCFF095LYX.bam bam (alignments) 3.5 GB
ENCFF100LOB.bigWig bigWig (minus strand signal of all reads) 70.5 MB
ENCFF102YLU.bam bam (alignments) 3.5 GB
ENCFF119AGP.bam bam (alignments) 4.1 GB
ENCFF127UYS.bam bam (alignments) 4.3 GB
ENCFF150WMD.bam bam (transcriptome alignments) 5.8 GB
ENCFF187BMU.bigWig bigWig (plus strand signal of unique reads) 71.2 MB
ENCFF188CCE.bigWig bigWig (minus strand signal of unique reads) 63.0 MB
ENCFF192XZC.bigWig bigWig (minus strand signal of unique reads) 66.1 MB
ENCFF203MPC.bigWig bigWig (minus strand signal of unique reads) 69.5 MB
ENCFF229ZJN.bigWig bigWig (plus strand signal of all reads) 69.7 MB
ENCFF252KJR.bigWig bigWig (minus strand signal of all reads) 71.7 MB
ENCFF255CCA.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF258SMA.bam bam (alignments) 4.0 GB
ENCFF261QKG.tsv tsv (transcript quantifications) 29.8 MB
ENCFF280FQX.bam bam (transcriptome alignments) 6.0 GB
ENCFF298MAK.bigWig bigWig (minus strand signal of unique reads) 66.1 MB
ENCFF299VOR.tsv tsv (differential expression quantifications) 4.2 MB
ENCFF312VYI.bigWig bigWig (plus strand signal of unique reads) 69.4 MB
ENCFF313QON.tsv tsv (transcript quantifications) 24.9 MB
ENCFF358IQG.tsv tsv (gene quantifications) 9.4 MB
ENCFF367IXJ.bam bam (alignments) 4.1 GB
ENCFF382CHD.bigWig bigWig (minus strand signal of all reads) 68.5 MB
ENCFF385TVR.bigWig bigWig (plus strand signal of all reads) 72.9 MB
ENCFF389SWQ.tsv tsv (gene quantifications) 9.1 MB
ENCFF391QLB.bigWig bigWig (minus strand signal of unique reads) 67.9 MB
ENCFF446OTL.bigWig bigWig (minus strand signal of unique reads) 69.5 MB
ENCFF455OKR.bam bam (alignments) 3.4 GB
ENCFF456EYZ.bigWig bigWig (minus strand signal of all reads) 71.9 MB
ENCFF466JNV.tsv tsv (transcript quantifications) 27.3 MB
ENCFF484TAS.bigWig bigWig (plus strand signal of unique reads) 67.8 MB
ENCFF513OPO.bigWig bigWig (plus strand signal of all reads) 73.1 MB
ENCFF520BCJ.bigWig bigWig (plus strand signal of all reads) 78.8 MB
ENCFF526FGJ.bigWig bigWig (minus strand signal of unique reads) 70.6 MB
ENCFF533CTF.fastq fastq (reads) 2.4 GB
ENCFF546KCC.tar tar (differential splicing quantifications) 15.4 MB
ENCFF563FAT.bigWig bigWig (plus strand signal of all reads) 80.9 MB
ENCFF563FGQ.bam bam (alignments) 3.4 GB
ENCFF564ZFE.tsv tsv (transcript quantifications) 27.3 MB
ENCFF566KNP.bigWig bigWig (minus strand signal of unique reads) 69.5 MB
ENCFF568KAU.bigWig bigWig (minus strand signal of all reads) 77.6 MB
ENCFF571TIF.bigWig bigWig (plus strand signal of unique reads) 72.3 MB
ENCFF593GEQ.bigWig bigWig (plus strand signal of unique reads) 72.2 MB
ENCFF593RZA.bam bam (transcriptome alignments) 5.1 GB
ENCFF595FBG.bigWig bigWig (minus strand signal of unique reads) 64.8 MB
ENCFF608EPE.bigWig bigWig (minus strand signal of unique reads) 70.6 MB
ENCFF617OXY.bam bam (transcriptome alignments) 5.3 GB
ENCFF654FMQ.bam bam (alignments) 4.3 GB
ENCFF664LJR.bigWig bigWig (minus strand signal of all reads) 77.6 MB
ENCFF673ILF.bigWig bigWig (plus strand signal of all reads) 80.9 MB
ENCFF683NME.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF701CAJ.fastq fastq (reads) 2.3 GB
ENCFF709SHQ.bigWig bigWig (minus strand signal of unique reads) 71.3 MB
ENCFF718YZN.tsv tsv (gene quantifications) 10.4 MB
ENCFF722EMV.bigWig bigWig (minus strand signal of all reads) 79.6 MB
ENCFF723XYR.tsv tsv (transcript quantifications) 29.8 MB
ENCFF733ULE.bigWig bigWig (plus strand signal of unique reads) 71.1 MB
ENCFF735RCP.bigWig bigWig (minus strand signal of all reads) 76.0 MB
ENCFF754XTZ.bigWig bigWig (plus strand signal of unique reads) 67.6 MB
ENCFF768UXV.tsv tsv (gene quantifications) 10.4 MB
ENCFF779PSR.tsv tsv (transcript quantifications) 25.3 MB
ENCFF785OZW.fastq fastq (reads) 2.3 GB
ENCFF785UFC.bam bam (alignments) 3.5 GB
ENCFF799RLK.bigWig bigWig (plus strand signal of all reads) 78.8 MB
ENCFF831TZU.bam bam (transcriptome alignments) 5.3 GB
ENCFF832ZKI.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF838DES.tsv tsv (gene quantifications) 9.1 MB
ENCFF855KFW.tsv tsv (gene quantifications) 9.4 MB
ENCFF860KRF.bigWig bigWig (plus strand signal of all reads) 74.3 MB
ENCFF866RWF.bam bam (transcriptome alignments) 5.1 GB
ENCFF903NJV.bigWig bigWig (minus strand signal of all reads) 69.8 MB
ENCFF910XMW.bigWig bigWig (plus strand signal of all reads) 80.0 MB
ENCFF915JAY.bam bam (alignments) 3.6 GB
ENCFF917ETU.bigWig bigWig (minus strand signal of all reads) 79.1 MB
ENCFF927VBK.bigWig bigWig (plus strand signal of all reads) 71.6 MB
ENCFF929SRN.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF948OHX.bigWig bigWig (plus strand signal of unique reads) 66.6 MB
ENCFF959TAD.bigWig bigWig (minus strand signal of all reads) 79.6 MB
ENCFF979WIZ.bigWig bigWig (plus strand signal of unique reads) 69.6 MB
ENCFF994CVK.bigWig bigWig (plus strand signal of all reads) 76.9 MB
ENCSR301TFY ENCSR · via encode_api

eCLIP experiment on HepG2 against DKC1

Homo sapiens

36 data files
FileTypeSize
ENCFF002FLD.bed bed (peaks) 54.2 KB
ENCFF030SOE.bed bed (peaks) 440.5 KB
ENCFF043XKO.bed bed (peaks) 843.2 KB
ENCFF074ATJ.bed bed (peaks) 311.9 KB
ENCFF099IRI.bigWig bigWig (plus strand signal of unique reads) 3.6 MB
ENCFF111YEH.bam bam (alignments) 332.6 MB
ENCFF163AYZ.bigWig bigWig (minus strand signal of unique reads) 3.5 MB
ENCFF192FMW.bigWig bigWig (plus strand signal of unique reads) 11.2 MB
ENCFF252TQP.bam bam (alignments) 321.6 MB
ENCFF268UYC.bed bed (peaks) 114.6 KB
ENCFF404KRN.bigBed bigBed (peaks) 484.8 KB
ENCFF435VZL.bigWig bigWig (plus strand signal of unique reads) 11.5 MB
ENCFF462ZYJ.fastq fastq (reads) 598.5 MB
ENCFF484SFT.bigBed bigBed (peaks) 349.9 KB
ENCFF494NKD.fastq fastq (reads) 623.5 MB
ENCFF502GTY.bigWig bigWig (minus strand signal of unique reads) 10.9 MB
ENCFF507TSG.bigBed bigBed (peaks) 1.7 MB
ENCFF565YYP.fastq fastq (reads) 527.6 MB
ENCFF568RRM.bam bam (alignments) 181.5 MB
ENCFF604AJU.bigBed bigBed (peaks) 973.4 KB
ENCFF633LQC.bed bed (peaks) 53.9 KB
ENCFF648HDL.bed bed (peaks) 173.7 KB
ENCFF701KSH.bigBed bigBed (peaks) 1.7 MB
ENCFF732TFX.bam bam (alignments) 174.3 MB
ENCFF766JDH.bigBed bigBed (peaks) 1.7 MB
ENCFF824DEU.bigBed bigBed (peaks) 697.4 KB
ENCFF841ZPX.bed bed (peaks) 830.0 KB
ENCFF850VGF.fastq fastq (reads) 516.6 MB
ENCFF859KPS.bigWig bigWig (plus strand signal of unique reads) 3.7 MB
ENCFF889WDL.bigWig bigWig (minus strand signal of unique reads) 3.6 MB
ENCFF895VPK.bigWig bigWig (minus strand signal of unique reads) 11.2 MB
ENCFF897PMV.bed bed (peaks) 304.5 KB
ENCFF922HZE.bigBed bigBed (peaks) 1015.4 KB
ENCFF929VXO.bed bed (peaks) 249.4 KB
ENCFF965TAV.bigBed bigBed (peaks) 714.2 KB
ENCFF979PQN.bigBed bigBed (peaks) 608.2 KB
ENCSR815VVI ENCSR · via encode_api

eCLIP experiment on HepG2 against CDC40

Homo sapiens

34 data files
FileTypeSize
ENCFF027MEO.bed bed (peaks) 24.5 KB
ENCFF035SSS.bigBed bigBed (peaks) 2.0 MB
ENCFF098MVQ.bigWig bigWig (minus strand signal of unique reads) 25.5 MB
ENCFF115LRN.bigWig bigWig (minus strand signal of unique reads) 26.2 MB
ENCFF134NUB.bed bed (peaks) 1.1 MB
ENCFF160PYB.bigWig bigWig (minus strand signal of unique reads) 13.4 MB
ENCFF171MEK.bam bam (alignments) 563.0 MB
ENCFF204UQL.bed bed (peaks) 25.1 KB
ENCFF282MQX.bam bam (alignments) 251.6 MB
ENCFF294CVK.bigBed bigBed (peaks) 927.8 KB
ENCFF313CFH.bed bed (peaks) 757.8 KB
ENCFF350KRN.bigBed bigBed (peaks) 572.9 KB
ENCFF359LZO.fastq fastq (reads) 1.1 GB
ENCFF373ROO.bigBed bigBed (peaks) 6.0 MB
ENCFF376EVA.fastq fastq (reads) 294.1 MB
ENCFF416LFA.bam bam (alignments) 541.4 MB
ENCFF423FSZ.bed bed (peaks) 136.8 KB
ENCFF513MLD.bed bed (peaks) 3.2 MB
ENCFF570ACD.fastq fastq (reads) 1.2 GB
ENCFF586WCC.bigBed bigBed (peaks) 6.1 MB
ENCFF600TAI.bigWig bigWig (plus strand signal of unique reads) 14.1 MB
ENCFF635KCV.bigBed bigBed (peaks) 2.0 MB
ENCFF684OXK.bed bed (peaks) 3.2 MB
ENCFF751QSR.bigBed bigBed (peaks) 380.9 KB
ENCFF770GEL.bam bam (alignments) 238.3 MB
ENCFF886RPO.fastq fastq (reads) 321.9 MB
ENCFF890AXT.bed bed (peaks) 1.2 MB
ENCFF897ZVJ.bigWig bigWig (plus strand signal of unique reads) 26.8 MB
ENCFF909QKC.bigWig bigWig (plus strand signal of unique reads) 13.4 MB
ENCFF937CBH.bed bed (peaks) 455.4 KB
ENCFF951IZB.bigWig bigWig (plus strand signal of unique reads) 26.0 MB
ENCFF979HRV.bigBed bigBed (peaks) 1.4 MB
ENCFF983HUL.bigWig bigWig (minus strand signal of unique reads) 12.9 MB
ENCFF997VPG.bed bed (peaks) 251.0 KB
ENCSR655NZA ENCSR · via encode_api

eCLIP experiment on HepG2 against XRN2

Homo sapiens

36 data files
FileTypeSize
ENCFF005UXB.bigBed bigBed (peaks) 1.6 MB
ENCFF008SMT.fastq fastq (reads) 606.9 MB
ENCFF017XXT.fastq fastq (reads) 643.1 MB
ENCFF104WLX.bigWig bigWig (plus strand signal of unique reads) 9.9 MB
ENCFF142XTJ.bed bed (peaks) 618.2 KB
ENCFF163LXD.bed bed (peaks) 243.9 KB
ENCFF184DUX.fastq fastq (reads) 516.6 MB
ENCFF260PAC.bam bam (alignments) 589.6 MB
ENCFF307RJJ.bam bam (alignments) 175.2 MB
ENCFF321HPH.bed bed (peaks) 34.5 KB
ENCFF410YOZ.bigWig bigWig (minus strand signal of unique reads) 9.4 MB
ENCFF469QZK.bigBed bigBed (peaks) 653.2 KB
ENCFF470XOZ.fastq fastq (reads) 493.0 MB
ENCFF482YSR.bigWig bigWig (minus strand signal of unique reads) 29.8 MB
ENCFF492OPF.bed bed (peaks) 3.3 MB
ENCFF509GIQ.bigWig bigWig (plus strand signal of unique reads) 9.7 MB
ENCFF584DZW.bam bam (alignments) 170.4 MB
ENCFF633AFR.bigBed bigBed (peaks) 2.5 MB
ENCFF651HOR.bigBed bigBed (peaks) 2.3 MB
ENCFF686HZC.bigBed bigBed (peaks) 572.1 KB
ENCFF688YXK.bed bed (peaks) 740.2 KB
ENCFF689OKB.bam bam (alignments) 574.0 MB
ENCFF717EQF.bed bed (peaks) 35.8 KB
ENCFF723HML.bigWig bigWig (plus strand signal of unique reads) 30.3 MB
ENCFF762LTO.bigBed bigBed (peaks) 6.1 MB
ENCFF782AAU.bigWig bigWig (minus strand signal of unique reads) 29.2 MB
ENCFF811KFU.bigBed bigBed (peaks) 6.1 MB
ENCFF832HZS.bed bed (peaks) 251.7 KB
ENCFF844JTH.bigBed bigBed (peaks) 2.5 MB
ENCFF845EBP.bed bed (peaks) 1.2 MB
ENCFF859SGL.bigWig bigWig (minus strand signal of unique reads) 9.5 MB
ENCFF872UNS.bed bed (peaks) 337.6 KB
ENCFF886MNU.bigWig bigWig (plus strand signal of unique reads) 31.3 MB
ENCFF924DCK.bigBed bigBed (peaks) 1.2 MB
ENCFF944KMN.bed bed (peaks) 3.3 MB
ENCFF963GMC.bed bed (peaks) 1.2 MB
ENCSR914WQV ENCSR · via encode_api

shRNA knockdown against CSTF2T in HepG2 cells followed by RNA-seq. (CSTF2T BGHLV14)

Homo sapiens

92 data files
FileTypeSize
ENCFF010KML.bigWig bigWig (minus strand signal of all reads) 74.0 MB
ENCFF013QCK.bigWig bigWig (plus strand signal of all reads) 76.5 MB
ENCFF014AFJ.tsv tsv (transcript quantifications) 27.3 MB
ENCFF036BUD.bigWig bigWig (plus strand signal of unique reads) 74.6 MB
ENCFF053WLX.bigWig bigWig (minus strand signal of unique reads) 72.7 MB
ENCFF066GBH.bigWig bigWig (plus strand signal of unique reads) 67.8 MB
ENCFF080GGP.bigWig bigWig (plus strand signal of all reads) 83.1 MB
ENCFF082VSA.tsv tsv (gene quantifications) 10.4 MB
ENCFF122EGU.tsv tsv (differential expression quantifications) 4.2 MB
ENCFF138OGO.bigWig bigWig (minus strand signal of unique reads) 73.2 MB
ENCFF140VQZ.tsv tsv (transcript quantifications) 29.8 MB
ENCFF147GUZ.bam bam (transcriptome alignments) 4.9 GB
ENCFF155EKS.bam bam (transcriptome alignments) 4.9 GB
ENCFF172EQJ.tsv tsv (differential expression quantifications) 2.8 MB
ENCFF174RZY.bigWig bigWig (minus strand signal of unique reads) 72.7 MB
ENCFF175PMF.tar tar (differential splicing quantifications) 3.3 MB
ENCFF187JOD.bam bam (alignments) 3.4 GB
ENCFF201MEN.bam bam (alignments) 3.5 GB
ENCFF204MEG.tsv tsv (gene quantifications) 9.1 MB
ENCFF209NXO.bigWig bigWig (minus strand signal of unique reads) 70.5 MB
ENCFF222EAI.tsv tsv (transcript quantifications) 25.3 MB
ENCFF230BQU.fastq fastq (reads) 2.2 GB
ENCFF233BFQ.bigWig bigWig (plus strand signal of all reads) 83.1 MB
ENCFF234SVK.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF253FIM.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF254FXB.bigWig bigWig (minus strand signal of all reads) 80.1 MB
ENCFF255XRZ.bigWig bigWig (plus strand signal of all reads) 82.8 MB
ENCFF262GIV.bigWig bigWig (plus strand signal of unique reads) 70.9 MB
ENCFF276EBI.bam bam (transcriptome alignments) 5.3 GB
ENCFF287GNK.bam bam (alignments) 4.1 GB
ENCFF297AJV.bigWig bigWig (plus strand signal of unique reads) 72.5 MB
ENCFF320WSP.tsv tsv (gene quantifications) 9.4 MB
ENCFF327GQX.tsv tsv (transcript quantifications) 27.3 MB
ENCFF333EWC.bigWig bigWig (minus strand signal of all reads) 81.6 MB
ENCFF334UJK.bam bam (alignments) 3.9 GB
ENCFF336LAC.bigWig bigWig (plus strand signal of unique reads) 74.7 MB
ENCFF352GVC.bigWig bigWig (plus strand signal of unique reads) 75.4 MB
ENCFF352MST.bam bam (alignments) 3.4 GB
ENCFF354MEU.bigWig bigWig (plus strand signal of all reads) 71.4 MB
ENCFF358MWT.bam bam (transcriptome alignments) 4.7 GB
ENCFF367EQY.bigWig bigWig (minus strand signal of all reads) 81.4 MB
ENCFF370QFV.bigWig bigWig (minus strand signal of unique reads) 70.3 MB
ENCFF398HDV.bigWig bigWig (plus strand signal of all reads) 76.0 MB
ENCFF400MKS.bigWig bigWig (minus strand signal of all reads) 71.1 MB
ENCFF433JRZ.bigWig bigWig (plus strand signal of all reads) 75.4 MB
ENCFF452NMS.bigWig bigWig (minus strand signal of all reads) 75.2 MB
ENCFF456YBF.bigWig bigWig (minus strand signal of unique reads) 73.4 MB
ENCFF460PWY.tsv tsv (transcript quantifications) 24.9 MB
ENCFF477BJE.bigWig bigWig (plus strand signal of all reads) 76.8 MB
ENCFF480FZS.bigWig bigWig (minus strand signal of all reads) 81.6 MB
ENCFF490QZO.bam bam (alignments) 4.1 GB
ENCFF496DEQ.tsv tsv (transcript quantifications) 29.8 MB
ENCFF496JNJ.bigWig bigWig (minus strand signal of unique reads) 69.1 MB
ENCFF527RWI.bam bam (alignments) 4.1 GB
ENCFF529NFO.bam bam (alignments) 3.9 GB
ENCFF533PNI.bam bam (alignments) 3.5 GB
ENCFF545JRU.bam bam (alignments) 4.1 GB
ENCFF558BZK.fastq fastq (reads) 2.2 GB
ENCFF559FGH.bigWig bigWig (plus strand signal of all reads) 81.4 MB
ENCFF560PUO.tsv tsv (transcript quantifications) 24.9 MB
ENCFF573GFV.tsv tsv (gene quantifications) 10.4 MB
ENCFF601GSO.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF636OWE.bam bam (transcriptome alignments) 5.5 GB
ENCFF648CJU.bigWig bigWig (minus strand signal of all reads) 75.0 MB
ENCFF660JHL.bigWig bigWig (minus strand signal of all reads) 74.6 MB
ENCFF660UNI.bigWig bigWig (minus strand signal of unique reads) 64.9 MB
ENCFF662TVD.fastq fastq (reads) 2.1 GB
ENCFF686CMN.bam bam (alignments) 3.4 GB
ENCFF693OKA.fastq fastq (reads) 2.1 GB
ENCFF694MUZ.tsv tsv (gene quantifications) 9.4 MB
ENCFF725SUR.bigWig bigWig (minus strand signal of unique reads) 69.1 MB
ENCFF729EKT.bigWig bigWig (plus strand signal of unique reads) 72.3 MB
ENCFF731BTR.bigWig bigWig (minus strand signal of all reads) 70.0 MB
ENCFF743APW.tar tar (differential splicing quantifications) 14.4 MB
ENCFF769NHJ.bigWig bigWig (minus strand signal of unique reads) 72.3 MB
ENCFF778YQP.bigWig bigWig (plus strand signal of unique reads) 74.3 MB
ENCFF779CYM.bigWig bigWig (minus strand signal of unique reads) 66.1 MB
ENCFF799YDQ.tar tar (differential splicing quantifications) 2.8 MB
ENCFF803GAF.tsv tsv (transcript quantifications) 25.3 MB
ENCFF812WEZ.tsv tsv (gene quantifications) 9.1 MB
ENCFF873GJF.bam bam (transcriptome alignments) 4.8 GB
ENCFF884IWZ.bigWig bigWig (plus strand signal of unique reads) 75.1 MB
ENCFF885HHU.bigWig bigWig (minus strand signal of all reads) 80.5 MB
ENCFF888HWL.bigWig bigWig (plus strand signal of unique reads) 66.7 MB
ENCFF942DJH.bigWig bigWig (minus strand signal of all reads) 81.4 MB
ENCFF954MCS.bigWig bigWig (plus strand signal of unique reads) 75.7 MB
ENCFF962MTA.bigWig bigWig (plus strand signal of all reads) 81.8 MB
ENCFF964KDR.bigWig bigWig (plus strand signal of all reads) 82.8 MB
ENCFF968XRP.bigWig bigWig (plus strand signal of unique reads) 70.9 MB
ENCFF976KMK.bigWig bigWig (minus strand signal of unique reads) 73.7 MB
ENCFF988YAH.bigWig bigWig (plus strand signal of all reads) 72.4 MB
ENCFF995TYO.bam bam (alignments) 3.4 GB
ENCSR755TJC ENCSR · via encode_api

eCLIP experiment on HepG2 against HNRNPUL1

Homo sapiens

36 data files
FileTypeSize
ENCFF007BKB.fastq fastq (reads) 467.2 MB
ENCFF021KKM.bigWig bigWig (plus strand signal of unique reads) 28.3 MB
ENCFF050RYR.bigBed bigBed (peaks) 1.3 MB
ENCFF076JEG.bam bam (alignments) 403.2 MB
ENCFF124XWE.bigBed bigBed (peaks) 5.1 MB
ENCFF162GIM.bigWig bigWig (minus strand signal of unique reads) 27.2 MB
ENCFF168AGB.fastq fastq (reads) 484.2 MB
ENCFF207VJQ.bigBed bigBed (peaks) 363.9 KB
ENCFF216CTT.bigWig bigWig (minus strand signal of unique reads) 21.3 MB
ENCFF301CMC.bigWig bigWig (plus strand signal of unique reads) 21.9 MB
ENCFF309UEL.bigWig bigWig (minus strand signal of unique reads) 27.2 MB
ENCFF321NHK.bed bed (peaks) 401.1 KB
ENCFF355WVE.bed bed (peaks) 10.0 KB
ENCFF376SOW.bigBed bigBed (peaks) 726.8 KB
ENCFF397PNO.bigBed bigBed (peaks) 793.0 KB
ENCFF398LMC.bam bam (alignments) 522.4 MB
ENCFF407BEZ.bigBed bigBed (peaks) 4.2 MB
ENCFF412WFJ.bigWig bigWig (plus strand signal of unique reads) 21.7 MB
ENCFF439LWA.bed bed (peaks) 120.1 KB
ENCFF487VHA.bed bed (peaks) 2.7 MB
ENCFF536HED.bigWig bigWig (minus strand signal of unique reads) 21.2 MB
ENCFF536XVW.bam bam (alignments) 398.8 MB
ENCFF569CXX.bed bed (peaks) 2.1 MB
ENCFF610JVZ.bed bed (peaks) 10.1 KB
ENCFF648UJC.fastq fastq (reads) 351.2 MB
ENCFF676GXG.bed bed (peaks) 2.1 MB
ENCFF686YHG.bigBed bigBed (peaks) 5.2 MB
ENCFF713PRK.bigWig bigWig (plus strand signal of unique reads) 28.2 MB
ENCFF746NIH.bigBed bigBed (peaks) 1.5 MB
ENCFF779TPK.bed bed (peaks) 348.3 KB
ENCFF801KHR.bed bed (peaks) 2.7 MB
ENCFF831POP.bigBed bigBed (peaks) 4.2 MB
ENCFF867UTV.bed bed (peaks) 140.4 KB
ENCFF956ELY.bam bam (alignments) 520.4 MB
ENCFF956VZN.fastq fastq (reads) 345.9 MB
ENCFF978IYY.bigBed bigBed (peaks) 333.3 KB
ENCSR725ARB ENCSR · via encode_api

eCLIP experiment on K562 against AGGF1

Homo sapiens

36 data files
FileTypeSize
ENCFF063NJU.bed bed (peaks) 278.8 KB
ENCFF156RRX.bigWig bigWig (plus strand signal of unique reads) 30.2 MB
ENCFF169SMQ.bed bed (peaks) 116.5 KB
ENCFF237MHV.bigWig bigWig (plus strand signal of unique reads) 5.5 MB
ENCFF239WVK.bigWig bigWig (minus strand signal of unique reads) 5.3 MB
ENCFF243EOW.fastq fastq (reads) 645.9 MB
ENCFF251DMV.bam bam (alignments) 646.0 MB
ENCFF259KQL.bam bam (alignments) 107.3 MB
ENCFF260IXV.bigBed bigBed (peaks) 516.3 KB
ENCFF286KRK.bigBed bigBed (peaks) 912.7 KB
ENCFF290RMT.fastq fastq (reads) 685.3 MB
ENCFF364LOF.bigBed bigBed (peaks) 669.2 KB
ENCFF423IWN.bigBed bigBed (peaks) 4.8 MB
ENCFF450VBG.bed bed (peaks) 479.3 KB
ENCFF468XDE.bigBed bigBed (peaks) 686.3 KB
ENCFF505DQW.fastq fastq (reads) 595.6 MB
ENCFF564VOC.bed bed (peaks) 1.4 MB
ENCFF573SHW.bigBed bigBed (peaks) 4.7 MB
ENCFF587NNZ.bed bed (peaks) 776.0 KB
ENCFF604NYA.bam bam (alignments) 319.8 MB
ENCFF606WSU.bam bam (alignments) 670.4 MB
ENCFF631WUL.bigBed bigBed (peaks) 3.0 MB
ENCFF637HML.bigWig bigWig (minus strand signal of unique reads) 29.1 MB
ENCFF637HZJ.bed bed (peaks) 2.5 MB
ENCFF683KLO.bed bed (peaks) 2.5 MB
ENCFF688PZV.bed bed (peaks) 228.0 KB
ENCFF726ABM.bigWig bigWig (plus strand signal of unique reads) 16.6 MB
ENCFF726SIG.bed bed (peaks) 308.5 KB
ENCFF755MFB.bigWig bigWig (minus strand signal of unique reads) 29.9 MB
ENCFF810NKV.bed bed (peaks) 165.7 KB
ENCFF812FTP.bigWig bigWig (plus strand signal of unique reads) 31.1 MB
ENCFF914VHS.fastq fastq (reads) 731.7 MB
ENCFF936KMM.bigBed bigBed (peaks) 1.6 MB
ENCFF982AXR.bigBed bigBed (peaks) 2.8 MB
ENCFF987ZLP.bigWig bigWig (minus strand signal of unique reads) 16.2 MB
ENCFF993OCR.bigBed bigBed (peaks) 1.2 MB
ENCSR300IEW ENCSR · via encode_api

shRNA knockdown against DDX24 in HepG2 cells followed by RNA-seq. (DDX24 BGHLV14)

Homo sapiens

92 data files
FileTypeSize
ENCFF012JWV.bigWig bigWig (plus strand signal of all reads) 85.3 MB
ENCFF017CLK.bigWig bigWig (minus strand signal of unique reads) 73.5 MB
ENCFF039DAI.bigWig bigWig (minus strand signal of all reads) 84.8 MB
ENCFF049YQK.bigWig bigWig (plus strand signal of all reads) 80.1 MB
ENCFF052UJN.bam bam (alignments) 4.5 GB
ENCFF065CKJ.bigWig bigWig (plus strand signal of unique reads) 68.3 MB
ENCFF075MTT.bam bam (alignments) 3.7 GB
ENCFF103VZD.bigWig bigWig (minus strand signal of unique reads) 73.0 MB
ENCFF123OIN.bigWig bigWig (minus strand signal of all reads) 70.9 MB
ENCFF133FCA.bigWig bigWig (minus strand signal of unique reads) 73.4 MB
ENCFF155IVJ.bigWig bigWig (minus strand signal of all reads) 77.5 MB
ENCFF156ACO.tsv tsv (transcript quantifications) 24.9 MB
ENCFF158TEK.tsv tsv (transcript quantifications) 24.9 MB
ENCFF159UNI.bigWig bigWig (plus strand signal of unique reads) 75.4 MB
ENCFF167KTX.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF173ICO.bigWig bigWig (plus strand signal of all reads) 77.1 MB
ENCFF202KRA.bam bam (alignments) 3.7 GB
ENCFF217MOP.tar tar (differential splicing quantifications) 3.5 MB
ENCFF217THX.tsv tsv (transcript quantifications) 25.3 MB
ENCFF237FRW.bam bam (alignments) 3.8 GB
ENCFF253HMW.bam bam (alignments) 4.9 GB
ENCFF257NXN.bigWig bigWig (minus strand signal of all reads) 75.5 MB
ENCFF259WYU.bam bam (alignments) 4.1 GB
ENCFF263TGW.bigWig bigWig (plus strand signal of unique reads) 74.9 MB
ENCFF268SDD.bigWig bigWig (minus strand signal of all reads) 74.8 MB
ENCFF268UGP.bigWig bigWig (plus strand signal of all reads) 81.7 MB
ENCFF302ELX.tar tar (differential splicing quantifications) 3.0 MB
ENCFF308MEB.bigWig bigWig (plus strand signal of all reads) 86.3 MB
ENCFF310XIN.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF327HAD.bam bam (alignments) 4.7 GB
ENCFF330SPL.bigWig bigWig (plus strand signal of all reads) 76.2 MB
ENCFF331YTS.bam bam (alignments) 4.9 GB
ENCFF349FHR.bam bam (alignments) 4.5 GB
ENCFF355AVZ.bam bam (transcriptome alignments) 5.8 GB
ENCFF361SAF.bigWig bigWig (minus strand signal of unique reads) 70.1 MB
ENCFF380WJE.tsv tsv (transcript quantifications) 27.3 MB
ENCFF392SUR.tsv tsv (differential expression quantifications) 4.3 MB
ENCFF404AVL.fastq fastq (reads) 2.7 GB
ENCFF404YQF.bigWig bigWig (minus strand signal of unique reads) 76.5 MB
ENCFF406DBJ.fastq fastq (reads) 2.7 GB
ENCFF424UOI.bigWig bigWig (plus strand signal of all reads) 83.1 MB
ENCFF432RJO.bigWig bigWig (minus strand signal of unique reads) 73.6 MB
ENCFF435LDO.bigWig bigWig (plus strand signal of unique reads) 78.2 MB
ENCFF470GJI.bam bam (transcriptome alignments) 7.0 GB
ENCFF474NMD.bigWig bigWig (plus strand signal of unique reads) 75.4 MB
ENCFF475WRY.bigWig bigWig (minus strand signal of all reads) 74.2 MB
ENCFF491MJJ.tsv tsv (transcript quantifications) 29.8 MB
ENCFF516LZG.bigWig bigWig (plus strand signal of unique reads) 71.9 MB
ENCFF521IYD.bigWig bigWig (plus strand signal of unique reads) 71.9 MB
ENCFF528JMT.tsv tsv (gene quantifications) 9.4 MB
ENCFF533HAT.bigWig bigWig (minus strand signal of unique reads) 76.2 MB
ENCFF548FZJ.bigWig bigWig (minus strand signal of all reads) 81.8 MB
ENCFF557NVN.fastq fastq (reads) 2.5 GB
ENCFF582VAP.bam bam (transcriptome alignments) 6.2 GB
ENCFF593EMS.bigWig bigWig (minus strand signal of all reads) 81.8 MB
ENCFF618DJU.tsv tsv (gene quantifications) 9.4 MB
ENCFF631KYA.bigWig bigWig (plus strand signal of all reads) 75.4 MB
ENCFF672KIU.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF676DXH.tsv tsv (gene quantifications) 9.1 MB
ENCFF683TPN.bigWig bigWig (plus strand signal of unique reads) 74.5 MB
ENCFF688GAG.tsv tsv (gene quantifications) 10.4 MB
ENCFF688OSQ.tsv tsv (transcript quantifications) 27.3 MB
ENCFF713VWE.bigWig bigWig (minus strand signal of unique reads) 76.5 MB
ENCFF751GUQ.bigWig bigWig (minus strand signal of all reads) 84.8 MB
ENCFF762HNH.tsv tsv (gene quantifications) 9.1 MB
ENCFF763VAK.bigWig bigWig (minus strand signal of unique reads) 69.8 MB
ENCFF768MCY.tsv tsv (gene quantifications) 10.4 MB
ENCFF776LMM.bigWig bigWig (plus strand signal of all reads) 72.3 MB
ENCFF795HSG.bigWig bigWig (plus strand signal of all reads) 86.3 MB
ENCFF797CGL.bam bam (transcriptome alignments) 5.8 GB
ENCFF799DPQ.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF805KIS.bam bam (alignments) 4.4 GB
ENCFF810UOV.bigWig bigWig (plus strand signal of unique reads) 78.6 MB
ENCFF837BDM.bam bam (transcriptome alignments) 6.2 GB
ENCFF839MNP.tsv tsv (transcript quantifications) 25.3 MB
ENCFF848HST.tar tar (differential splicing quantifications) 14.9 MB
ENCFF850TKZ.bigWig bigWig (minus strand signal of all reads) 80.6 MB
ENCFF861PIO.tsv tsv (transcript quantifications) 29.8 MB
ENCFF868LZH.bigWig bigWig (minus strand signal of unique reads) 72.7 MB
ENCFF869QUR.bigWig bigWig (minus strand signal of unique reads) 66.4 MB
ENCFF905SKI.bigWig bigWig (plus strand signal of unique reads) 71.7 MB
ENCFF908QXE.bigWig bigWig (minus strand signal of all reads) 78.6 MB
ENCFF918OBR.bam bam (alignments) 4.0 GB
ENCFF923XSK.bigWig bigWig (plus strand signal of all reads) 83.1 MB
ENCFF927VWY.bigWig bigWig (plus strand signal of unique reads) 78.5 MB
ENCFF927WPX.bigWig bigWig (minus strand signal of all reads) 84.0 MB
ENCFF940KMT.bam bam (alignments) 4.0 GB
ENCFF966VTI.bigWig bigWig (minus strand signal of unique reads) 70.0 MB
ENCFF975PYZ.bigWig bigWig (plus strand signal of all reads) 78.9 MB
ENCFF986FPH.fastq fastq (reads) 2.5 GB
ENCFF987UVH.bam bam (transcriptome alignments) 6.5 GB
ENCFF999SQW.bigWig bigWig (plus strand signal of unique reads) 75.4 MB
ENCSR812EIA ENCSR · via encode_api

shRNA knockdown against EXOSC9 in K562 cells followed by RNA-seq. (EXOSC9 BGKLV13)

Homo sapiens

92 data files
FileTypeSize
ENCFF017WMO.bigWig bigWig (plus strand signal of all reads) 85.6 MB
ENCFF022ADW.bigWig bigWig (minus strand signal of unique reads) 105.0 MB
ENCFF036YDT.bigWig bigWig (plus strand signal of all reads) 119.0 MB
ENCFF039VOM.tsv tsv (differential expression quantifications) 2.8 MB
ENCFF054UJS.bigWig bigWig (minus strand signal of unique reads) 75.9 MB
ENCFF067DRG.bigWig bigWig (minus strand signal of all reads) 85.6 MB
ENCFF070UHA.bigWig bigWig (minus strand signal of all reads) 118.4 MB
ENCFF072QEW.bigWig bigWig (minus strand signal of all reads) 84.4 MB
ENCFF077TED.bigWig bigWig (minus strand signal of unique reads) 96.0 MB
ENCFF078IJY.bigWig bigWig (plus strand signal of unique reads) 107.5 MB
ENCFF080EMK.bigWig bigWig (plus strand signal of all reads) 110.2 MB
ENCFF096IIU.bigWig bigWig (minus strand signal of all reads) 106.8 MB
ENCFF097RYS.tar tar (differential splicing quantifications) 4.5 MB
ENCFF108TGD.bam bam (transcriptome alignments) 5.1 GB
ENCFF122WRK.tsv tsv (gene quantifications) 9.1 MB
ENCFF132TIX.bigWig bigWig (plus strand signal of unique reads) 73.9 MB
ENCFF164HXF.bigWig bigWig (plus strand signal of unique reads) 77.7 MB
ENCFF178LBT.bigWig bigWig (plus strand signal of unique reads) 98.7 MB
ENCFF179APZ.fastq fastq (reads) 4.1 GB
ENCFF183ZLA.bam bam (alignments) 6.4 GB
ENCFF193SGL.bigWig bigWig (minus strand signal of unique reads) 67.9 MB
ENCFF221DBC.bigWig bigWig (minus strand signal of unique reads) 75.0 MB
ENCFF229AST.bigWig bigWig (minus strand signal of all reads) 76.2 MB
ENCFF229CNG.bam bam (alignments) 3.7 GB
ENCFF241HCO.bigWig bigWig (minus strand signal of all reads) 73.3 MB
ENCFF247UVO.tsv tsv (gene quantifications) 10.4 MB
ENCFF251GUY.tar tar (differential splicing quantifications) 15.6 MB
ENCFF262ESM.bigWig bigWig (plus strand signal of all reads) 77.3 MB
ENCFF276VLR.bigWig bigWig (plus strand signal of all reads) 79.5 MB
ENCFF284ECI.bam bam (transcriptome alignments) 8.8 GB
ENCFF286CJK.bigWig bigWig (plus strand signal of all reads) 120.1 MB
ENCFF294YKG.bigWig bigWig (minus strand signal of all reads) 85.7 MB
ENCFF313ACS.bigWig bigWig (plus strand signal of all reads) 86.8 MB
ENCFF330QLJ.bigWig bigWig (minus strand signal of unique reads) 100.1 MB
ENCFF351TMM.bigWig bigWig (plus strand signal of unique reads) 108.0 MB
ENCFF371KIH.tsv tsv (transcript quantifications) 24.9 MB
ENCFF374KHE.fastq fastq (reads) 4.0 GB
ENCFF385VXE.bam bam (transcriptome alignments) 10.0 GB
ENCFF403OKW.bam bam (transcriptome alignments) 5.6 GB
ENCFF408LQR.bam bam (alignments) 4.3 GB
ENCFF417TZB.bam bam (alignments) 7.6 GB
ENCFF432MAZ.bigWig bigWig (minus strand signal of unique reads) 71.9 MB
ENCFF444TGB.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF483LWH.bigWig bigWig (plus strand signal of unique reads) 73.1 MB
ENCFF507TOO.tsv tsv (transcript quantifications) 29.8 MB
ENCFF509OKT.bam bam (alignments) 3.7 GB
ENCFF512SQM.tsv tsv (gene quantifications) 9.5 MB
ENCFF548ALP.bam bam (alignments) 6.4 GB
ENCFF551ATQ.tsv tsv (transcript quantifications) 24.9 MB
ENCFF553ICC.bam bam (alignments) 7.6 GB
ENCFF576VMI.bam bam (transcriptome alignments) 8.9 GB
ENCFF587LYP.bam bam (alignments) 4.4 GB
ENCFF591SBF.bigWig bigWig (plus strand signal of unique reads) 76.8 MB
ENCFF608SCG.bam bam (alignments) 6.4 GB
ENCFF609YVZ.fastq fastq (reads) 2.3 GB
ENCFF619MTP.bigWig bigWig (plus strand signal of unique reads) 102.5 MB
ENCFF619UUE.bigWig bigWig (plus strand signal of unique reads) 103.5 MB
ENCFF622BTO.bigWig bigWig (plus strand signal of all reads) 120.2 MB
ENCFF633AQJ.bigWig bigWig (minus strand signal of unique reads) 100.7 MB
ENCFF638RNU.tsv tsv (gene quantifications) 9.4 MB
ENCFF646LUP.bigWig bigWig (minus strand signal of all reads) 78.0 MB
ENCFF656MAB.tsv tsv (transcript quantifications) 29.8 MB
ENCFF674KPG.bam bam (alignments) 4.4 GB
ENCFF675WOM.bigWig bigWig (minus strand signal of unique reads) 75.7 MB
ENCFF687OAD.bigWig bigWig (plus strand signal of all reads) 86.8 MB
ENCFF690ZVI.tsv tsv (gene quantifications) 10.4 MB
ENCFF696MFG.bigWig bigWig (minus strand signal of unique reads) 104.6 MB
ENCFF712AYU.bigWig bigWig (plus strand signal of unique reads) 107.7 MB
ENCFF712QSW.bigWig bigWig (minus strand signal of all reads) 104.6 MB
ENCFF732HGF.bam bam (alignments) 7.4 GB
ENCFF756VUS.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF762ICO.tsv tsv (transcript quantifications) 25.3 MB
ENCFF762PQQ.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF764DUR.tar tar (differential splicing quantifications) 3.8 MB
ENCFF790PTR.bigWig bigWig (minus strand signal of unique reads) 105.4 MB
ENCFF794MVI.bigWig bigWig (plus strand signal of unique reads) 69.7 MB
ENCFF802HMC.bigWig bigWig (plus strand signal of all reads) 106.9 MB
ENCFF806LBU.bigWig bigWig (minus strand signal of all reads) 108.0 MB
ENCFF826GKX.tsv tsv (differential expression quantifications) 4.1 MB
ENCFF873CEV.bigWig bigWig (minus strand signal of all reads) 117.2 MB
ENCFF901MKD.bigWig bigWig (minus strand signal of unique reads) 71.5 MB
ENCFF907WWF.bigWig bigWig (plus strand signal of all reads) 74.7 MB
ENCFF910XHE.bam bam (alignments) 3.7 GB
ENCFF913XEG.bigWig bigWig (plus strand signal of all reads) 108.4 MB
ENCFF918ZOI.tsv tsv (gene quantifications) 9.1 MB
ENCFF942LDW.tsv tsv (transcript quantifications) 27.3 MB
ENCFF952XLG.fastq fastq (reads) 2.3 GB
ENCFF955RSX.bigWig bigWig (minus strand signal of all reads) 118.5 MB
ENCFF958ITB.tsv tsv (transcript quantifications) 25.3 MB
ENCFF966AMP.bigWig bigWig (plus strand signal of unique reads) 77.7 MB
ENCFF971VFR.tsv tsv (transcript quantifications) 27.5 MB
ENCFF981HFI.bam bam (transcriptome alignments) 5.0 GB
ENCSR893RAV ENCSR · via encode_api

eCLIP experiment on K562 against U2AF2

Homo sapiens

36 data files
FileTypeSize
ENCFF009ERS.bed bed (peaks) 491.0 KB
ENCFF024JFG.bigWig bigWig (plus strand signal of unique reads) 19.6 MB
ENCFF077GTP.bigBed bigBed (peaks) 810.5 KB
ENCFF092WRE.bam bam (alignments) 315.2 MB
ENCFF107LLL.bigBed bigBed (peaks) 3.6 MB
ENCFF129DJK.bed bed (peaks) 385.9 KB
ENCFF133QAR.bigBed bigBed (peaks) 4.9 MB
ENCFF182HYE.bed bed (peaks) 1.8 MB
ENCFF270BLT.fastq fastq (reads) 358.5 MB
ENCFF290DFO.bed bed (peaks) 86.4 KB
ENCFF320NIV.bigBed bigBed (peaks) 2.0 MB
ENCFF326LAQ.bed bed (peaks) 1.2 MB
ENCFF331AFC.bed bed (peaks) 86.4 KB
ENCFF398AHG.bigWig bigWig (plus strand signal of unique reads) 26.9 MB
ENCFF405ETO.bed bed (peaks) 2.5 MB
ENCFF430RTZ.bed bed (peaks) 1.8 MB
ENCFF436ZNF.bigWig bigWig (minus strand signal of unique reads) 26.0 MB
ENCFF454FEB.bed bed (peaks) 2.5 MB
ENCFF524JHH.bigWig bigWig (plus strand signal of unique reads) 26.7 MB
ENCFF557WJG.bed bed (peaks) 949.9 KB
ENCFF567UMG.fastq fastq (reads) 299.9 MB
ENCFF573ZFK.bigWig bigWig (minus strand signal of unique reads) 19.0 MB
ENCFF636MAJ.bigBed bigBed (peaks) 4.9 MB
ENCFF669QIT.bigBed bigBed (peaks) 3.5 MB
ENCFF670MPL.bigBed bigBed (peaks) 3.6 MB
ENCFF675UIB.bigBed bigBed (peaks) 4.4 MB
ENCFF708UWK.fastq fastq (reads) 367.8 MB
ENCFF712LBW.bigWig bigWig (minus strand signal of unique reads) 25.8 MB
ENCFF765TAB.bigWig bigWig (minus strand signal of unique reads) 18.9 MB
ENCFF783DTX.bam bam (alignments) 456.2 MB
ENCFF832WSD.bigBed bigBed (peaks) 1.7 MB
ENCFF835KXL.bam bam (alignments) 311.7 MB
ENCFF886IXX.fastq fastq (reads) 307.9 MB
ENCFF936JSP.bam bam (alignments) 451.7 MB
ENCFF984WEQ.bigBed bigBed (peaks) 997.7 KB
ENCFF996ZIG.bigWig bigWig (plus strand signal of unique reads) 19.7 MB
ENCSR196INN ENCSR · via encode_api

eCLIP experiment on K562 against RBM15

Homo sapiens

36 data files
FileTypeSize
ENCFF006CBO.bed bed (peaks) 2.2 MB
ENCFF008EYG.fastq fastq (reads) 390.2 MB
ENCFF038CWB.bigWig bigWig (minus strand signal of unique reads) 14.6 MB
ENCFF086HIT.bam bam (alignments) 497.0 MB
ENCFF097EGO.bigWig bigWig (minus strand signal of unique reads) 23.8 MB
ENCFF130EXN.bigBed bigBed (peaks) 4.3 MB
ENCFF141IQY.bigBed bigBed (peaks) 5.2 MB
ENCFF141MFP.bam bam (alignments) 269.4 MB
ENCFF232LTR.bigBed bigBed (peaks) 4.3 MB
ENCFF264WQQ.bigWig bigWig (plus strand signal of unique reads) 15.1 MB
ENCFF275AXU.bigBed bigBed (peaks) 3.1 MB
ENCFF368JSN.bigWig bigWig (plus strand signal of unique reads) 14.8 MB
ENCFF381XNF.bigBed bigBed (peaks) 830.2 KB
ENCFF404OSK.bed bed (peaks) 2.2 MB
ENCFF418DFE.fastq fastq (reads) 647.3 MB
ENCFF452DMI.fastq fastq (reads) 413.7 MB
ENCFF527BMM.bed bed (peaks) 192.0 KB
ENCFF528TDT.bigBed bigBed (peaks) 2.9 MB
ENCFF529IPP.bed bed (peaks) 554.5 KB
ENCFF529RBH.bed bed (peaks) 1.4 MB
ENCFF532QNF.bam bam (alignments) 521.0 MB
ENCFF543MDB.bigBed bigBed (peaks) 2.9 MB
ENCFF597MMG.bed bed (peaks) 193.8 KB
ENCFF671GDQ.bed bed (peaks) 330.0 KB
ENCFF688FME.fastq fastq (reads) 615.5 MB
ENCFF715SCF.bed bed (peaks) 1.4 MB
ENCFF723XZC.bigWig bigWig (plus strand signal of unique reads) 24.5 MB
ENCFF739LLZ.bam bam (alignments) 260.1 MB
ENCFF837JRV.bed bed (peaks) 1.4 MB
ENCFF847RVA.bigBed bigBed (peaks) 1.2 MB
ENCFF852BMJ.bigBed bigBed (peaks) 1.9 MB
ENCFF865XWQ.bigBed bigBed (peaks) 2.7 MB
ENCFF904JLR.bed bed (peaks) 894.4 KB
ENCFF923WYZ.bigWig bigWig (minus strand signal of unique reads) 24.5 MB
ENCFF969UFE.bigWig bigWig (minus strand signal of unique reads) 14.2 MB
ENCFF992HAL.bigWig bigWig (plus strand signal of unique reads) 25.3 MB
ENCSR061EVO ENCSR · via encode_api

eCLIP experiment on HepG2 against SND1

Homo sapiens

36 data files
FileTypeSize
ENCFF054ZXE.bed bed (peaks) 1.0 MB
ENCFF087LWQ.bigBed bigBed (peaks) 2.7 MB
ENCFF101EKG.bed bed (peaks) 165.2 KB
ENCFF101SPF.bigWig bigWig (minus strand signal of unique reads) 12.0 MB
ENCFF119OMH.bed bed (peaks) 740.8 KB
ENCFF169YJW.fastq fastq (reads) 378.0 MB
ENCFF174TXM.bam bam (alignments) 218.6 MB
ENCFF202GTL.bigWig bigWig (minus strand signal of unique reads) 7.6 MB
ENCFF202UMC.bigWig bigWig (plus strand signal of unique reads) 7.6 MB
ENCFF218RIX.bed bed (peaks) 752.2 KB
ENCFF230VML.bed bed (peaks) 298.4 KB
ENCFF296HGS.bam bam (alignments) 259.6 MB
ENCFF300LGS.bigBed bigBed (peaks) 2.6 MB
ENCFF303YBI.fastq fastq (reads) 364.1 MB
ENCFF321FYJ.bigBed bigBed (peaks) 1.5 MB
ENCFF321IEI.bigWig bigWig (plus strand signal of unique reads) 12.1 MB
ENCFF335KAS.fastq fastq (reads) 409.9 MB
ENCFF379MHZ.bigWig bigWig (minus strand signal of unique reads) 7.6 MB
ENCFF413DAP.bigBed bigBed (peaks) 1.8 MB
ENCFF438PZK.bed bed (peaks) 279.4 KB
ENCFF461RPA.bigBed bigBed (peaks) 1.8 MB
ENCFF471JAQ.bed bed (peaks) 1.1 MB
ENCFF510VYE.bigBed bigBed (peaks) 1.5 MB
ENCFF541WQN.bigBed bigBed (peaks) 709.2 KB
ENCFF587JIF.bigBed bigBed (peaks) 2.1 MB
ENCFF593VHQ.bigWig bigWig (plus strand signal of unique reads) 12.2 MB
ENCFF596YNB.bigBed bigBed (peaks) 2.1 MB
ENCFF609LWQ.bed bed (peaks) 167.8 KB
ENCFF655NIG.bam bam (alignments) 220.2 MB
ENCFF736FCQ.bigWig bigWig (plus strand signal of unique reads) 7.6 MB
ENCFF749TYO.bed bed (peaks) 904.5 KB
ENCFF761CYV.bed bed (peaks) 917.0 KB
ENCFF827JFL.bam bam (alignments) 259.5 MB
ENCFF886NVW.fastq fastq (reads) 347.4 MB
ENCFF902QMS.bigWig bigWig (minus strand signal of unique reads) 11.9 MB
ENCFF958RYM.bigBed bigBed (peaks) 676.0 KB
ENCSR744GEU ENCSR · via encode_api

eCLIP experiment on HepG2 against IGF2BP1

Homo sapiens

36 data files
FileTypeSize
ENCFF026VOV.bigWig bigWig (minus strand signal of unique reads) 12.0 MB
ENCFF047WLR.bigBed bigBed (peaks) 2.9 MB
ENCFF059OSQ.bam bam (alignments) 250.5 MB
ENCFF062USV.bigBed bigBed (peaks) 767.4 KB
ENCFF068FVA.bigBed bigBed (peaks) 2.4 MB
ENCFF079OER.bigWig bigWig (plus strand signal of unique reads) 15.0 MB
ENCFF081XSP.bigWig bigWig (minus strand signal of unique reads) 14.5 MB
ENCFF145YYK.bed bed (peaks) 1.5 MB
ENCFF191MYZ.bigBed bigBed (peaks) 964.5 KB
ENCFF252IAP.bed bed (peaks) 790.7 KB
ENCFF301YGO.bed bed (peaks) 315.6 KB
ENCFF343XNS.bigBed bigBed (peaks) 2.0 MB
ENCFF358CZV.bigBed bigBed (peaks) 2.4 MB
ENCFF362JFX.fastq fastq (reads) 286.6 MB
ENCFF370PYL.bigWig bigWig (plus strand signal of unique reads) 12.3 MB
ENCFF398TNM.bigWig bigWig (plus strand signal of unique reads) 14.9 MB
ENCFF408OWO.bigBed bigBed (peaks) 3.0 MB
ENCFF426PJF.bigWig bigWig (plus strand signal of unique reads) 12.3 MB
ENCFF427IMN.bam bam (alignments) 248.1 MB
ENCFF437VOG.fastq fastq (reads) 198.6 MB
ENCFF438FSK.bam bam (alignments) 305.9 MB
ENCFF442USD.bed bed (peaks) 100.7 KB
ENCFF486BXN.bed bed (peaks) 1.5 MB
ENCFF489RIF.bigBed bigBed (peaks) 3.0 MB
ENCFF495QKH.bigBed bigBed (peaks) 3.8 MB
ENCFF517ECT.bed bed (peaks) 100.3 KB
ENCFF529DSE.bed bed (peaks) 428.6 KB
ENCFF539YWE.fastq fastq (reads) 208.8 MB
ENCFF556EAA.bed bed (peaks) 1014.8 KB
ENCFF705SDK.bed bed (peaks) 1.2 MB
ENCFF725BUB.bigWig bigWig (minus strand signal of unique reads) 14.5 MB
ENCFF777OWL.bam bam (alignments) 304.3 MB
ENCFF806HPD.bigBed bigBed (peaks) 1.6 MB
ENCFF906EOC.bigWig bigWig (minus strand signal of unique reads) 12.0 MB
ENCFF943QCL.fastq fastq (reads) 270.8 MB
ENCFF976DBP.bed bed (peaks) 1.2 MB
ENCSR993OLA ENCSR · via encode_api

eCLIP experiment on HepG2 against IGF2BP3

Homo sapiens

36 data files
FileTypeSize
ENCFF015NHN.bam bam (alignments) 286.4 MB
ENCFF049ZWL.bigBed bigBed (peaks) 2.6 MB
ENCFF076GHL.bed bed (peaks) 1.7 MB
ENCFF119VBJ.bigWig bigWig (minus strand signal of unique reads) 14.5 MB
ENCFF152MMM.bigWig bigWig (plus strand signal of unique reads) 15.0 MB
ENCFF163VGP.bam bam (alignments) 410.7 MB
ENCFF175PMW.bed bed (peaks) 1.7 MB
ENCFF181QYC.bigBed bigBed (peaks) 914.0 KB
ENCFF225YAS.bigWig bigWig (minus strand signal of unique reads) 18.9 MB
ENCFF270FPU.bam bam (alignments) 409.5 MB
ENCFF311TOZ.bed bed (peaks) 53.0 KB
ENCFF333RHN.fastq fastq (reads) 390.0 MB
ENCFF351DRD.bigBed bigBed (peaks) 2.7 MB
ENCFF358BAW.bigWig bigWig (minus strand signal of unique reads) 18.9 MB
ENCFF386MJS.bigWig bigWig (minus strand signal of unique reads) 14.5 MB
ENCFF494JDZ.bed bed (peaks) 869.7 KB
ENCFF518ZYS.fastq fastq (reads) 370.4 MB
ENCFF533DYO.bigBed bigBed (peaks) 1.8 MB
ENCFF603WCG.bigBed bigBed (peaks) 4.2 MB
ENCFF631PRH.bigBed bigBed (peaks) 3.3 MB
ENCFF655ZEC.bigWig bigWig (plus strand signal of unique reads) 19.4 MB
ENCFF656OKM.bigWig bigWig (plus strand signal of unique reads) 19.5 MB
ENCFF707KYW.bigBed bigBed (peaks) 2.1 MB
ENCFF768LZF.fastq fastq (reads) 316.6 MB
ENCFF858ZLX.bed bed (peaks) 1.3 MB
ENCFF859PTK.bed bed (peaks) 390.8 KB
ENCFF860PRT.fastq fastq (reads) 334.5 MB
ENCFF886SDQ.bed bed (peaks) 53.6 KB
ENCFF889AZG.bigWig bigWig (plus strand signal of unique reads) 15.0 MB
ENCFF905NTJ.bigBed bigBed (peaks) 786.7 KB
ENCFF932BHQ.bigBed bigBed (peaks) 3.3 MB
ENCFF938GUT.bed bed (peaks) 1.0 MB
ENCFF942UFG.bed bed (peaks) 319.6 KB
ENCFF957CDL.bam bam (alignments) 287.5 MB
ENCFF961EYQ.bigBed bigBed (peaks) 3.1 MB
ENCFF998WZW.bed bed (peaks) 1.3 MB
ENCSR532VUB ENCSR · via encode_api

eCLIP experiment on K562 against CPSF6

Homo sapiens

36 data files
FileTypeSize
ENCFF016HQW.bigWig bigWig (minus strand signal of unique reads) 10.9 MB
ENCFF069VDZ.bigBed bigBed (peaks) 2.0 MB
ENCFF087RUW.bigBed bigBed (peaks) 1.6 MB
ENCFF094MKS.bigWig bigWig (plus strand signal of unique reads) 13.1 MB
ENCFF185XTD.bam bam (alignments) 216.5 MB
ENCFF211WCW.bigBed bigBed (peaks) 1003.1 KB
ENCFF212RTC.bed bed (peaks) 184.3 KB
ENCFF219UMT.bigBed bigBed (peaks) 1.8 MB
ENCFF228KKX.bed bed (peaks) 184.1 KB
ENCFF255BMV.bigWig bigWig (plus strand signal of unique reads) 13.4 MB
ENCFF264WFT.bed bed (peaks) 17.3 KB
ENCFF271BGN.bigBed bigBed (peaks) 458.4 KB
ENCFF278OBX.bigWig bigWig (minus strand signal of unique reads) 11.0 MB
ENCFF284QIO.bed bed (peaks) 1.1 MB
ENCFF394FNH.fastq fastq (reads) 318.1 MB
ENCFF418OUX.bigBed bigBed (peaks) 1.8 MB
ENCFF420PXR.fastq fastq (reads) 319.6 MB
ENCFF437HLQ.bigWig bigWig (minus strand signal of unique reads) 12.7 MB
ENCFF443OUZ.bigWig bigWig (minus strand signal of unique reads) 12.6 MB
ENCFF454PKM.bed bed (peaks) 936.4 KB
ENCFF468JIB.bigBed bigBed (peaks) 1.6 MB
ENCFF503NTY.bigWig bigWig (plus strand signal of unique reads) 11.3 MB
ENCFF515QAG.bed bed (peaks) 934.7 KB
ENCFF550ABZ.bam bam (alignments) 175.8 MB
ENCFF550ZSZ.bam bam (alignments) 173.3 MB
ENCFF584TAI.bigBed bigBed (peaks) 2.0 MB
ENCFF595MJW.bigBed bigBed (peaks) 1.0 MB
ENCFF627IZE.bigBed bigBed (peaks) 449.3 KB
ENCFF635NZZ.bed bed (peaks) 17.9 KB
ENCFF751GZQ.bam bam (alignments) 213.8 MB
ENCFF776TRJ.fastq fastq (reads) 293.3 MB
ENCFF802BJP.bed bed (peaks) 1.1 MB
ENCFF804XIP.bigWig bigWig (plus strand signal of unique reads) 11.6 MB
ENCFF916SVG.bed bed (peaks) 515.9 KB
ENCFF974NXR.bed bed (peaks) 540.6 KB
ENCFF975ABT.fastq fastq (reads) 295.8 MB
ENCSR997FOT ENCSR · via encode_api

shRNA knockdown against SUB1 in HepG2 cells followed by RNA-seq. (SUB1 BGHLV14)

Homo sapiens

92 data files
FileTypeSize
ENCFF004TRN.bigWig bigWig (minus strand signal of all reads) 62.9 MB
ENCFF013YRK.tsv tsv (transcript quantifications) 25.3 MB
ENCFF030VDS.bigWig bigWig (plus strand signal of unique reads) 61.7 MB
ENCFF033INW.bam bam (transcriptome alignments) 5.4 GB
ENCFF044OKC.bam bam (alignments) 3.6 GB
ENCFF051SHJ.bigWig bigWig (minus strand signal of all reads) 71.9 MB
ENCFF052RPP.bigWig bigWig (plus strand signal of unique reads) 69.0 MB
ENCFF061KEM.bigWig bigWig (plus strand signal of all reads) 59.3 MB
ENCFF081HFG.bigWig bigWig (minus strand signal of unique reads) 67.4 MB
ENCFF083ZDH.tsv tsv (transcript quantifications) 27.1 MB
ENCFF092BBH.tsv tsv (transcript quantifications) 24.9 MB
ENCFF109VWG.bigWig bigWig (minus strand signal of all reads) 78.5 MB
ENCFF112MSE.bigWig bigWig (plus strand signal of unique reads) 65.6 MB
ENCFF112NKH.bigWig bigWig (plus strand signal of unique reads) 62.5 MB
ENCFF124DVX.bam bam (alignments) 4.2 GB
ENCFF125NLR.bam bam (alignments) 3.7 GB
ENCFF136JXC.bigWig bigWig (minus strand signal of unique reads) 71.2 MB
ENCFF145DJZ.bigWig bigWig (minus strand signal of unique reads) 58.2 MB
ENCFF146FWD.tsv tsv (differential expression quantifications) 5.5 MB
ENCFF147AZH.bam bam (alignments) 3.0 GB
ENCFF159LNG.bigWig bigWig (minus strand signal of unique reads) 54.3 MB
ENCFF164BZU.bigWig bigWig (minus strand signal of unique reads) 71.3 MB
ENCFF177HZT.bam bam (transcriptome alignments) 6.1 GB
ENCFF186RTA.tsv tsv (differential expression quantifications) 2.6 MB
ENCFF213TAJ.bigWig bigWig (minus strand signal of unique reads) 71.2 MB
ENCFF221ERI.bigWig bigWig (minus strand signal of all reads) 69.0 MB
ENCFF240QNY.tsv tsv (gene quantifications) 9.4 MB
ENCFF246WUF.bigWig bigWig (minus strand signal of all reads) 79.1 MB
ENCFF247IMS.bam bam (alignments) 3.0 GB
ENCFF280WGU.bigWig bigWig (plus strand signal of unique reads) 59.3 MB
ENCFF284VHN.bigWig bigWig (minus strand signal of all reads) 67.5 MB
ENCFF304SJR.bam bam (alignments) 3.6 GB
ENCFF307PJT.bigWig bigWig (plus strand signal of all reads) 74.7 MB
ENCFF316JYC.tsv tsv (transcript quantifications) 25.3 MB
ENCFF334WAF.bigWig bigWig (plus strand signal of all reads) 79.5 MB
ENCFF336JBQ.fastq fastq (reads) 2.0 GB
ENCFF341MTX.tsv tsv (transcript quantifications) 29.8 MB
ENCFF354LTL.bigWig bigWig (minus strand signal of all reads) 58.4 MB
ENCFF359KQI.bigWig bigWig (minus strand signal of all reads) 66.9 MB
ENCFF395QWB.bigWig bigWig (plus strand signal of unique reads) 55.6 MB
ENCFF410NJM.bigWig bigWig (plus strand signal of unique reads) 72.9 MB
ENCFF410RSI.bigWig bigWig (plus strand signal of all reads) 70.2 MB
ENCFF432VGJ.tsv tsv (gene quantifications) 9.1 MB
ENCFF447JLV.bigWig bigWig (plus strand signal of all reads) 67.6 MB
ENCFF452CPM.bigWig bigWig (minus strand signal of unique reads) 58.1 MB
ENCFF462BBK.tsv tsv (transcript quantifications) 27.3 MB
ENCFF474HVJ.bigWig bigWig (minus strand signal of all reads) 61.9 MB
ENCFF480UWC.bigWig bigWig (plus strand signal of all reads) 80.2 MB
ENCFF491PZW.bigWig bigWig (minus strand signal of unique reads) 67.6 MB
ENCFF498JKL.bam bam (alignments) 3.0 GB
ENCFF498UZJ.bigWig bigWig (plus strand signal of all reads) 68.4 MB
ENCFF523LVA.tsv tsv (gene quantifications) 10.4 MB
ENCFF523ZKG.tsv tsv (differential expression quantifications) 4.2 MB
ENCFF531UIW.bigWig bigWig (minus strand signal of unique reads) 60.4 MB
ENCFF535OUW.bigWig bigWig (plus strand signal of all reads) 73.0 MB
ENCFF541MJK.bigWig bigWig (plus strand signal of all reads) 68.4 MB
ENCFF572PAW.bam bam (alignments) 4.4 GB
ENCFF617ESP.bam bam (alignments) 3.5 GB
ENCFF634LLZ.tsv tsv (gene quantifications) 10.4 MB
ENCFF648GWU.bigWig bigWig (minus strand signal of all reads) 67.5 MB
ENCFF685VZN.bigWig bigWig (minus strand signal of unique reads) 61.2 MB
ENCFF690CRQ.bigWig bigWig (plus strand signal of unique reads) 69.1 MB
ENCFF702NMQ.tsv tsv (transcript quantifications) 29.8 MB
ENCFF727IIK.bigWig bigWig (minus strand signal of unique reads) 61.2 MB
ENCFF733UEM.bam bam (alignments) 3.6 GB
ENCFF747BFI.bam bam (transcriptome alignments) 5.4 GB
ENCFF758FGH.bigWig bigWig (minus strand signal of all reads) 79.0 MB
ENCFF761BWP.bigWig bigWig (plus strand signal of unique reads) 59.4 MB
ENCFF768PAL.bigWig bigWig (plus strand signal of all reads) 80.2 MB
ENCFF785OWH.bam bam (alignments) 3.6 GB
ENCFF785WBB.bigWig bigWig (plus strand signal of unique reads) 73.0 MB
ENCFF789RLV.bam bam (transcriptome alignments) 4.4 GB
ENCFF791ZIA.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF797XAD.tar tar (differential splicing quantifications) 2.8 MB
ENCFF809SWW.bigWig bigWig (plus strand signal of all reads) 62.7 MB
ENCFF822HDG.bigWig bigWig (minus strand signal of all reads) 73.5 MB
ENCFF844LYQ.fastq fastq (reads) 2.0 GB
ENCFF849QYJ.bigWig bigWig (minus strand signal of unique reads) 63.9 MB
ENCFF868GOX.bam bam (transcriptome alignments) 5.0 GB
ENCFF868YOV.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF868ZFH.tar tar (differential splicing quantifications) 3.4 MB
ENCFF884JEC.tsv tsv (transcript quantifications) 24.9 MB
ENCFF886YHH.fastq fastq (reads) 2.4 GB
ENCFF889WRT.bam bam (alignments) 4.4 GB
ENCFF941HSC.tsv tsv (gene quantifications) 9.1 MB
ENCFF962BNS.tar tar (differential splicing quantifications) 14.5 MB
ENCFF963ZLK.fastq fastq (reads) 2.4 GB
ENCFF968PAS.bigWig bigWig (plus strand signal of all reads) 63.8 MB
ENCFF973MTP.bam bam (transcriptome alignments) 4.4 GB
ENCFF981LJY.bigWig bigWig (plus strand signal of unique reads) 62.4 MB
ENCFF990QAH.bigWig bigWig (plus strand signal of unique reads) 72.9 MB
ENCFF995FGY.tsv tsv (gene quantifications) 9.4 MB
ENCSR927JXU ENCSR · via encode_api

shRNA knockdown against FUS in HepG2 cells followed by RNA-seq. (FUS BGHLV14)

Homo sapiens

92 data files
FileTypeSize
ENCFF004DAR.bigWig bigWig (minus strand signal of all reads) 76.7 MB
ENCFF007BHV.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF015PVQ.bigWig bigWig (minus strand signal of unique reads) 75.0 MB
ENCFF016MOB.tsv tsv (gene quantifications) 9.4 MB
ENCFF022RFN.bigWig bigWig (plus strand signal of all reads) 84.0 MB
ENCFF023JVA.bam bam (alignments) 4.1 GB
ENCFF035LSH.bigWig bigWig (minus strand signal of all reads) 89.2 MB
ENCFF043VEF.bam bam (transcriptome alignments) 6.5 GB
ENCFF056BUU.bigWig bigWig (minus strand signal of all reads) 82.0 MB
ENCFF064MIV.bam bam (transcriptome alignments) 6.6 GB
ENCFF077QWP.bigWig bigWig (plus strand signal of unique reads) 81.7 MB
ENCFF080DFP.bam bam (alignments) 4.1 GB
ENCFF091LKG.bigWig bigWig (minus strand signal of all reads) 80.3 MB
ENCFF097XNT.bigWig bigWig (plus strand signal of all reads) 82.9 MB
ENCFF114BVN.bam bam (alignments) 4.8 GB
ENCFF117SNE.bigWig bigWig (minus strand signal of unique reads) 79.8 MB
ENCFF127DKU.bigWig bigWig (minus strand signal of unique reads) 79.9 MB
ENCFF128ELJ.bam bam (transcriptome alignments) 5.8 GB
ENCFF138XJC.fastq fastq (reads) 2.6 GB
ENCFF145RCV.bigWig bigWig (plus strand signal of unique reads) 81.1 MB
ENCFF149YDA.tsv tsv (transcript quantifications) 24.9 MB
ENCFF152RJH.bigWig bigWig (plus strand signal of all reads) 91.7 MB
ENCFF162PMY.bam bam (alignments) 4.0 GB
ENCFF169XEG.fastq fastq (reads) 2.7 GB
ENCFF179MWU.tsv tsv (transcript quantifications) 29.8 MB
ENCFF192FJD.tsv tsv (transcript quantifications) 24.9 MB
ENCFF195QIY.bigWig bigWig (minus strand signal of all reads) 89.8 MB
ENCFF198ZWL.tsv tsv (gene quantifications) 9.4 MB
ENCFF208AAJ.tsv tsv (gene quantifications) 9.1 MB
ENCFF221FOK.bam bam (alignments) 4.0 GB
ENCFF232TOQ.bam bam (alignments) 4.9 GB
ENCFF233WYA.tar tar (differential splicing quantifications) 3.7 MB
ENCFF234OBK.bigWig bigWig (plus strand signal of unique reads) 82.1 MB
ENCFF239TNS.bigWig bigWig (minus strand signal of all reads) 79.8 MB
ENCFF246ZXF.bigWig bigWig (minus strand signal of all reads) 87.1 MB
ENCFF259VDL.fastq fastq (reads) 2.6 GB
ENCFF266GJQ.bam bam (transcriptome alignments) 5.8 GB
ENCFF284DKB.tsv tsv (transcript quantifications) 27.4 MB
ENCFF295YFJ.tar tar (differential splicing quantifications) 15.2 MB
ENCFF298PQQ.bigWig bigWig (minus strand signal of all reads) 81.0 MB
ENCFF320ILJ.bigWig bigWig (plus strand signal of unique reads) 81.7 MB
ENCFF323NND.bigWig bigWig (plus strand signal of unique reads) 82.1 MB
ENCFF336YJK.bigWig bigWig (plus strand signal of all reads) 91.7 MB
ENCFF343ULE.bigWig bigWig (minus strand signal of unique reads) 78.7 MB
ENCFF353SFL.bigWig bigWig (plus strand signal of all reads) 88.7 MB
ENCFF382DXD.bam bam (alignments) 4.1 GB
ENCFF398MZV.bam bam (alignments) 4.2 GB
ENCFF398OBU.bigWig bigWig (plus strand signal of unique reads) 82.4 MB
ENCFF420XQL.bigWig bigWig (minus strand signal of unique reads) 75.5 MB
ENCFF421JGO.bigWig bigWig (plus strand signal of all reads) 89.4 MB
ENCFF434WBG.bigWig bigWig (minus strand signal of all reads) 87.6 MB
ENCFF436IMT.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF451HBC.tsv tsv (differential expression quantifications) 4.3 MB
ENCFF467MRN.bigWig bigWig (plus strand signal of all reads) 90.8 MB
ENCFF475UJI.bigWig bigWig (minus strand signal of unique reads) 79.3 MB
ENCFF525EYE.bigWig bigWig (minus strand signal of all reads) 78.1 MB
ENCFF531VSQ.bigWig bigWig (minus strand signal of all reads) 87.6 MB
ENCFF541AOX.bam bam (alignments) 4.8 GB
ENCFF541YEY.tsv tsv (differential expression quantifications) 1.8 MB
ENCFF546SWA.tsv tsv (differential expression quantifications) 5.5 MB
ENCFF586QOM.bam bam (alignments) 4.8 GB
ENCFF592TSU.bigWig bigWig (plus strand signal of unique reads) 77.1 MB
ENCFF614ADE.bigWig bigWig (plus strand signal of unique reads) 77.8 MB
ENCFF616KKX.bigWig bigWig (plus strand signal of unique reads) 73.6 MB
ENCFF647JQI.bigWig bigWig (plus strand signal of all reads) 89.4 MB
ENCFF697GDH.bigWig bigWig (minus strand signal of unique reads) 71.1 MB
ENCFF699EQY.bigWig bigWig (minus strand signal of unique reads) 79.3 MB
ENCFF708XBA.tsv tsv (gene quantifications) 10.4 MB
ENCFF730ASX.bam bam (transcriptome alignments) 5.9 GB
ENCFF738CFM.bigWig bigWig (plus strand signal of all reads) 80.1 MB
ENCFF738MYA.bigWig bigWig (minus strand signal of unique reads) 79.7 MB
ENCFF740AMG.tsv tsv (transcript quantifications) 25.3 MB
ENCFF768FEV.bigWig bigWig (plus strand signal of unique reads) 74.3 MB
ENCFF777IMP.tsv tsv (gene quantifications) 9.1 MB
ENCFF796SDA.fastq fastq (reads) 2.6 GB
ENCFF801QCZ.bam bam (alignments) 4.9 GB
ENCFF807TIT.tsv tsv (transcript quantifications) 25.3 MB
ENCFF811CMD.bigWig bigWig (minus strand signal of unique reads) 72.0 MB
ENCFF815XPG.tsv tsv (transcript quantifications) 29.8 MB
ENCFF816HJS.bigWig bigWig (plus strand signal of unique reads) 78.2 MB
ENCFF817XJF.bam bam (alignments) 4.7 GB
ENCFF827NGB.bigWig bigWig (minus strand signal of unique reads) 75.7 MB
ENCFF841OZI.bigWig bigWig (minus strand signal of unique reads) 75.8 MB
ENCFF862AFS.bigWig bigWig (plus strand signal of all reads) 78.6 MB
ENCFF876XSM.tsv tsv (gene quantifications) 10.4 MB
ENCFF882BVB.bam bam (transcriptome alignments) 5.9 GB
ENCFF885GGX.tsv tsv (transcript quantifications) 27.4 MB
ENCFF899VIE.bigWig bigWig (plus strand signal of all reads) 81.5 MB
ENCFF915LBL.tar tar (differential splicing quantifications) 3.2 MB
ENCFF955PHF.bigWig bigWig (plus strand signal of unique reads) 77.8 MB
ENCFF972FRS.bigWig bigWig (minus strand signal of all reads) 89.8 MB
ENCFF980ELI.bigWig bigWig (plus strand signal of all reads) 82.0 MB
ENCSR142ZEQ ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) mock pulldown control experiment of hnRNPC

1 data file
FileTypeSize
ENCFF866DQR.fastq fastq (reads) 368.5 MB
ENCSR486YGP ENCSR · via encode_api

eCLIP experiment on HepG2 against FUBP3

Homo sapiens

34 data files
FileTypeSize
ENCFF015XGS.bigBed bigBed (peaks) 909.5 KB
ENCFF025FNK.bigBed bigBed (peaks) 1.5 MB
ENCFF038NWA.bigWig bigWig (minus strand signal of unique reads) 12.3 MB
ENCFF103YQS.bed bed (peaks) 902.7 KB
ENCFF121LXO.bigWig bigWig (minus strand signal of unique reads) 6.4 MB
ENCFF126AZS.fastq fastq (reads) 92.7 MB
ENCFF149SFF.bam bam (alignments) 232.5 MB
ENCFF157GGY.bigBed bigBed (peaks) 1.5 MB
ENCFF175YCA.bigBed bigBed (peaks) 619.3 KB
ENCFF231PRV.fastq fastq (reads) 97.4 MB
ENCFF253ITZ.bigBed bigBed (peaks) 911.6 KB
ENCFF410ITK.bed bed (peaks) 912.2 KB
ENCFF412WLP.bigWig bigWig (plus strand signal of unique reads) 6.5 MB
ENCFF442NVV.fastq fastq (reads) 154.4 MB
ENCFF466UMQ.bed bed (peaks) 60.9 KB
ENCFF533SOU.bed bed (peaks) 342.3 KB
ENCFF565TFN.bam bam (alignments) 138.7 MB
ENCFF598NYT.bed bed (peaks) 61.4 KB
ENCFF695KJV.bigWig bigWig (minus strand signal of unique reads) 12.6 MB
ENCFF709YPU.bam bam (alignments) 238.3 MB
ENCFF714TFP.bed bed (peaks) 482.3 KB
ENCFF724AGV.bed bed (peaks) 107.5 KB
ENCFF739YDO.bed bed (peaks) 481.2 KB
ENCFF756PDY.bed bed (peaks) 149.4 KB
ENCFF766NUA.bigBed bigBed (peaks) 353.8 KB
ENCFF786JBY.bigWig bigWig (plus strand signal of unique reads) 12.7 MB
ENCFF836HIK.bam bam (alignments) 136.3 MB
ENCFF853KTH.bigBed bigBed (peaks) 817.4 KB
ENCFF892YYJ.bigBed bigBed (peaks) 438.5 KB
ENCFF938RNB.fastq fastq (reads) 148.7 MB
ENCFF951MII.bigWig bigWig (plus strand signal of unique reads) 12.9 MB
ENCFF992GHQ.bigWig bigWig (minus strand signal of unique reads) 6.4 MB
ENCFF994YUD.bed bed (peaks) 238.5 KB
ENCFF996VRR.bigWig bigWig (plus strand signal of unique reads) 6.5 MB
ENCSR188IPO ENCSR · via encode_api

shRNA knockdown against GTF2F1 in K562 cells followed by RNA-seq. (GTF2F1 BGKLV13)

Homo sapiens

92 data files
FileTypeSize
ENCFF007UWP.bam bam (alignments) 4.6 GB
ENCFF027FFY.bigWig bigWig (minus strand signal of unique reads) 72.9 MB
ENCFF033ZMT.tsv tsv (transcript quantifications) 25.3 MB
ENCFF057NDU.tsv tsv (transcript quantifications) 24.9 MB
ENCFF060JVE.bigWig bigWig (plus strand signal of unique reads) 82.3 MB
ENCFF064FFJ.bigWig bigWig (minus strand signal of all reads) 89.8 MB
ENCFF070BOF.bam bam (transcriptome alignments) 5.9 GB
ENCFF074NGW.bigWig bigWig (plus strand signal of unique reads) 78.5 MB
ENCFF075AOO.tar tar (differential splicing quantifications) 15.2 MB
ENCFF076BWC.bam bam (transcriptome alignments) 5.3 GB
ENCFF086LAR.bigWig bigWig (plus strand signal of all reads) 84.8 MB
ENCFF087MVU.bigWig bigWig (plus strand signal of unique reads) 75.7 MB
ENCFF102QQO.tsv tsv (transcript quantifications) 24.9 MB
ENCFF120VYW.fastq fastq (reads) 2.5 GB
ENCFF151IJJ.bigWig bigWig (minus strand signal of unique reads) 75.9 MB
ENCFF170YZM.bigWig bigWig (plus strand signal of all reads) 91.1 MB
ENCFF173GBC.bam bam (alignments) 3.5 GB
ENCFF183GFI.bigWig bigWig (minus strand signal of all reads) 83.6 MB
ENCFF191BGR.bigWig bigWig (minus strand signal of unique reads) 79.4 MB
ENCFF195OAK.bam bam (alignments) 3.9 GB
ENCFF203EYL.tsv tsv (gene quantifications) 10.4 MB
ENCFF204XOP.bam bam (alignments) 4.1 GB
ENCFF221RXA.bam bam (alignments) 4.2 GB
ENCFF246DOP.bigWig bigWig (plus strand signal of all reads) 90.1 MB
ENCFF270WGC.bigWig bigWig (minus strand signal of unique reads) 73.7 MB
ENCFF290MNP.bigWig bigWig (minus strand signal of all reads) 83.6 MB
ENCFF294WQN.tsv tsv (transcript quantifications) 25.3 MB
ENCFF296LUJ.bigWig bigWig (minus strand signal of unique reads) 80.4 MB
ENCFF346IJP.tsv tsv (gene quantifications) 9.1 MB
ENCFF354JSE.bigWig bigWig (plus strand signal of all reads) 82.8 MB
ENCFF360WAK.bigWig bigWig (minus strand signal of unique reads) 71.1 MB
ENCFF374RWQ.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF377AZC.tsv tsv (gene quantifications) 9.1 MB
ENCFF381DVH.tsv tsv (transcript quantifications) 27.3 MB
ENCFF388MKH.bam bam (alignments) 4.5 GB
ENCFF393SDT.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF395YCI.bigWig bigWig (plus strand signal of unique reads) 73.1 MB
ENCFF406NEV.fastq fastq (reads) 2.2 GB
ENCFF410MWW.tsv tsv (transcript quantifications) 27.4 MB
ENCFF414VPJ.bam bam (transcriptome alignments) 4.8 GB
ENCFF415JWM.bam bam (alignments) 4.6 GB
ENCFF423WOO.bigWig bigWig (plus strand signal of all reads) 76.1 MB
ENCFF429ZQS.bigWig bigWig (plus strand signal of unique reads) 81.3 MB
ENCFF434CJR.bigWig bigWig (plus strand signal of unique reads) 82.3 MB
ENCFF442TUT.bigWig bigWig (minus strand signal of all reads) 78.0 MB
ENCFF444KBY.bigWig bigWig (plus strand signal of all reads) 91.0 MB
ENCFF445KUV.bigWig bigWig (minus strand signal of all reads) 88.8 MB
ENCFF453PTK.bigWig bigWig (minus strand signal of all reads) 89.9 MB
ENCFF456MIE.bigWig bigWig (minus strand signal of all reads) 75.0 MB
ENCFF458EMG.tsv tsv (gene quantifications) 9.4 MB
ENCFF465FTZ.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF487UKP.tsv tsv (gene quantifications) 9.4 MB
ENCFF544HBU.bam bam (alignments) 3.9 GB
ENCFF557SVY.bigWig bigWig (plus strand signal of all reads) 84.1 MB
ENCFF584ASI.bigWig bigWig (minus strand signal of all reads) 71.3 MB
ENCFF586XCH.tsv tsv (differential expression quantifications) 4.1 MB
ENCFF597PDW.bigWig bigWig (plus strand signal of unique reads) 77.6 MB
ENCFF599DCV.tsv tsv (transcript quantifications) 29.8 MB
ENCFF602OCU.bigWig bigWig (minus strand signal of all reads) 81.6 MB
ENCFF609DLM.bam bam (transcriptome alignments) 5.4 GB
ENCFF613PBX.fastq fastq (reads) 2.2 GB
ENCFF633GYP.fastq fastq (reads) 2.4 GB
ENCFF637CNX.bam bam (alignments) 3.5 GB
ENCFF637GPA.bigWig bigWig (plus strand signal of unique reads) 74.7 MB
ENCFF640GFT.bigWig bigWig (plus strand signal of unique reads) 75.7 MB
ENCFF669YDW.bigWig bigWig (minus strand signal of unique reads) 66.2 MB
ENCFF676NQA.bigWig bigWig (plus strand signal of unique reads) 71.5 MB
ENCFF683JFE.bigWig bigWig (minus strand signal of unique reads) 76.4 MB
ENCFF687ZOJ.bigWig bigWig (minus strand signal of all reads) 81.7 MB
ENCFF697VLL.bam bam (transcriptome alignments) 4.8 GB
ENCFF700BJQ.bam bam (alignments) 3.9 GB
ENCFF713UMZ.bam bam (alignments) 3.5 GB
ENCFF745KUJ.tar tar (differential splicing quantifications) 3.5 MB
ENCFF746XER.tsv tsv (transcript quantifications) 29.8 MB
ENCFF773BDW.bigWig bigWig (minus strand signal of unique reads) 80.2 MB
ENCFF787IST.bigWig bigWig (plus strand signal of all reads) 72.7 MB
ENCFF792WQX.bigWig bigWig (plus strand signal of unique reads) 71.3 MB
ENCFF854EDR.bigWig bigWig (plus strand signal of all reads) 77.0 MB
ENCFF859ZCC.bigWig bigWig (minus strand signal of unique reads) 73.9 MB
ENCFF884OUF.bigWig bigWig (plus strand signal of all reads) 79.5 MB
ENCFF895NJN.tsv tsv (gene quantifications) 10.4 MB
ENCFF897HEN.bigWig bigWig (minus strand signal of unique reads) 69.7 MB
ENCFF904SBC.bam bam (alignments) 4.2 GB
ENCFF919FWY.bigWig bigWig (minus strand signal of all reads) 82.5 MB
ENCFF932VFA.bigWig bigWig (plus strand signal of all reads) 84.8 MB
ENCFF937WAH.tar tar (differential splicing quantifications) 4.1 MB
ENCFF942WKZ.bigWig bigWig (plus strand signal of unique reads) 68.1 MB
ENCFF965EFT.bam bam (transcriptome alignments) 5.2 GB
ENCFF972COD.tsv tsv (differential expression quantifications) 2.7 MB
ENCFF983IWK.bigWig bigWig (plus strand signal of all reads) 82.9 MB
ENCFF983VMV.bigWig bigWig (minus strand signal of all reads) 75.5 MB
ENCFF986GJL.bigWig bigWig (minus strand signal of unique reads) 69.6 MB
ENCSR500WHE ENCSR · via encode_api

shRNA knockdown against XRCC6 in HepG2 cells followed by RNA-seq. (XRCC BGHLV14)

Homo sapiens

92 data files
FileTypeSize
ENCFF004ALU.bigWig bigWig (minus strand signal of unique reads) 73.5 MB
ENCFF017EOU.bigWig bigWig (minus strand signal of all reads) 75.5 MB
ENCFF029ZOB.bigWig bigWig (minus strand signal of all reads) 78.6 MB
ENCFF035MHC.bigWig bigWig (minus strand signal of all reads) 72.2 MB
ENCFF040CHI.bam bam (alignments) 3.7 GB
ENCFF042PBV.bigWig bigWig (plus strand signal of all reads) 80.1 MB
ENCFF043VNB.bigWig bigWig (plus strand signal of all reads) 84.6 MB
ENCFF046ENG.bam bam (alignments) 4.4 GB
ENCFF052XUJ.tsv tsv (differential expression quantifications) 2.0 MB
ENCFF061TLX.fastq fastq (reads) 2.3 GB
ENCFF062IBP.bigWig bigWig (plus strand signal of unique reads) 73.3 MB
ENCFF076USJ.tsv tsv (transcript quantifications) 25.3 MB
ENCFF080SIK.bam bam (transcriptome alignments) 5.5 GB
ENCFF083SBV.bigWig bigWig (plus strand signal of unique reads) 71.5 MB
ENCFF090VAD.bigWig bigWig (plus strand signal of unique reads) 72.0 MB
ENCFF143RLZ.bigWig bigWig (minus strand signal of unique reads) 71.2 MB
ENCFF150JGA.bigWig bigWig (minus strand signal of unique reads) 67.7 MB
ENCFF173FZI.bam bam (alignments) 4.0 GB
ENCFF176KCM.tsv tsv (gene quantifications) 9.1 MB
ENCFF182WWD.tsv tsv (gene quantifications) 9.4 MB
ENCFF209CDN.bigWig bigWig (minus strand signal of all reads) 74.3 MB
ENCFF229TWD.tar tar (differential splicing quantifications) 3.9 MB
ENCFF235GUO.tsv tsv (differential expression quantifications) 4.3 MB
ENCFF236FHB.bigWig bigWig (minus strand signal of all reads) 78.3 MB
ENCFF257AEC.bigWig bigWig (minus strand signal of all reads) 73.0 MB
ENCFF300UMT.tsv tsv (transcript quantifications) 24.9 MB
ENCFF302LWE.fastq fastq (reads) 2.4 GB
ENCFF303GBS.bigWig bigWig (plus strand signal of all reads) 72.4 MB
ENCFF320RGH.tsv tsv (gene quantifications) 10.4 MB
ENCFF363LBV.bigWig bigWig (plus strand signal of unique reads) 73.6 MB
ENCFF374VWU.bigWig bigWig (plus strand signal of all reads) 78.2 MB
ENCFF376RJQ.bigWig bigWig (plus strand signal of unique reads) 75.7 MB
ENCFF394QRT.bigWig bigWig (minus strand signal of unique reads) 73.8 MB
ENCFF398MZF.tsv tsv (gene quantifications) 10.4 MB
ENCFF408RIQ.tsv tsv (transcript quantifications) 24.9 MB
ENCFF408VAR.bam bam (transcriptome alignments) 5.2 GB
ENCFF414QEH.tsv tsv (gene quantifications) 9.4 MB
ENCFF428ETU.bigWig bigWig (plus strand signal of unique reads) 67.5 MB
ENCFF429IHM.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF435MIO.tsv tsv (gene quantifications) 9.1 MB
ENCFF442QBI.bigWig bigWig (plus strand signal of unique reads) 76.0 MB
ENCFF446ZYC.bam bam (transcriptome alignments) 5.3 GB
ENCFF463LWN.tar tar (differential splicing quantifications) 3.3 MB
ENCFF469YOE.bam bam (transcriptome alignments) 6.2 GB
ENCFF475KZS.bigWig bigWig (plus strand signal of all reads) 77.0 MB
ENCFF478JVD.tsv tsv (differential expression quantifications) 2.7 MB
ENCFF483JNR.bigWig bigWig (plus strand signal of unique reads) 76.5 MB
ENCFF488EJL.bigWig bigWig (plus strand signal of all reads) 85.2 MB
ENCFF510GMS.bigWig bigWig (plus strand signal of all reads) 76.0 MB
ENCFF514VVJ.bigWig bigWig (minus strand signal of unique reads) 71.5 MB
ENCFF519CDH.bigWig bigWig (plus strand signal of all reads) 80.1 MB
ENCFF524RZL.bam bam (alignments) 4.1 GB
ENCFF528NBL.tsv tsv (transcript quantifications) 27.3 MB
ENCFF532HDB.bigWig bigWig (minus strand signal of unique reads) 69.2 MB
ENCFF536RCU.fastq fastq (reads) 2.3 GB
ENCFF540QQW.bigWig bigWig (minus strand signal of all reads) 83.1 MB
ENCFF557FUP.bigWig bigWig (minus strand signal of unique reads) 70.0 MB
ENCFF558JIG.tar tar (differential splicing quantifications) 15.8 MB
ENCFF567SWR.bigWig bigWig (plus strand signal of all reads) 74.7 MB
ENCFF580CCW.tsv tsv (transcript quantifications) 27.3 MB
ENCFF602YPI.bam bam (alignments) 4.4 GB
ENCFF608LYM.fastq fastq (reads) 2.5 GB
ENCFF624WSP.bam bam (alignments) 3.4 GB
ENCFF635RUB.bigWig bigWig (plus strand signal of unique reads) 72.9 MB
ENCFF680KGY.tsv tsv (transcript quantifications) 25.3 MB
ENCFF687AGZ.bam bam (alignments) 4.1 GB
ENCFF696WPT.bam bam (alignments) 3.4 GB
ENCFF700ZVP.bam bam (transcriptome alignments) 5.9 GB
ENCFF707UZQ.bam bam (alignments) 3.6 GB
ENCFF711HAJ.bam bam (alignments) 3.6 GB
ENCFF722EQE.bigWig bigWig (plus strand signal of unique reads) 69.7 MB
ENCFF747ITE.bigWig bigWig (plus strand signal of unique reads) 69.7 MB
ENCFF759EEZ.bigWig bigWig (minus strand signal of all reads) 70.7 MB
ENCFF775COI.bigWig bigWig (minus strand signal of all reads) 78.5 MB
ENCFF788BJR.bigWig bigWig (plus strand signal of all reads) 85.2 MB
ENCFF810VGR.bigWig bigWig (plus strand signal of all reads) 73.7 MB
ENCFF810XDC.bigWig bigWig (minus strand signal of all reads) 83.6 MB
ENCFF811KGB.bigWig bigWig (plus strand signal of unique reads) 73.6 MB
ENCFF817THH.bam bam (alignments) 4.3 GB
ENCFF820FWV.bigWig bigWig (plus strand signal of all reads) 79.7 MB
ENCFF830VBS.tsv tsv (transcript quantifications) 29.8 MB
ENCFF855RZP.tsv tsv (transcript quantifications) 29.8 MB
ENCFF856ATL.bigWig bigWig (minus strand signal of unique reads) 74.3 MB
ENCFF856YJI.bigWig bigWig (minus strand signal of all reads) 76.5 MB
ENCFF858JMO.bigWig bigWig (minus strand signal of unique reads) 70.8 MB
ENCFF864KFO.bam bam (alignments) 3.5 GB
ENCFF870WKS.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF882ZSK.bigWig bigWig (minus strand signal of unique reads) 71.4 MB
ENCFF900EZB.bigWig bigWig (minus strand signal of unique reads) 67.8 MB
ENCFF937GNT.bigWig bigWig (minus strand signal of unique reads) 65.4 MB
ENCFF941NLF.bigWig bigWig (minus strand signal of all reads) 83.6 MB
ENCFF958JGQ.bam bam (transcriptome alignments) 5.5 GB
ENCSR286OKW ENCSR · via encode_api

shRNA knockdown against CSTF2T in K562 cells followed by RNA-seq. (CSTF2T BGKLV13)

Homo sapiens

92 data files
FileTypeSize
ENCFF008FIK.bam bam (alignments) 4.4 GB
ENCFF008UHA.fastq fastq (reads) 2.3 GB
ENCFF028ILF.bigWig bigWig (minus strand signal of all reads) 86.0 MB
ENCFF032QOR.bam bam (alignments) 3.7 GB
ENCFF058SEF.bigWig bigWig (minus strand signal of unique reads) 75.8 MB
ENCFF060RUT.bigWig bigWig (plus strand signal of unique reads) 69.8 MB
ENCFF082CHT.tsv tsv (transcript quantifications) 27.2 MB
ENCFF089ICU.bigWig bigWig (minus strand signal of all reads) 86.0 MB
ENCFF110CVQ.bam bam (alignments) 4.1 GB
ENCFF132GDL.bigWig bigWig (minus strand signal of unique reads) 68.0 MB
ENCFF138LDH.fastq fastq (reads) 2.6 GB
ENCFF141BNH.bigWig bigWig (minus strand signal of unique reads) 76.7 MB
ENCFF146KKD.bam bam (transcriptome alignments) 5.0 GB
ENCFF168XSI.bam bam (alignments) 5.3 GB
ENCFF169SKE.bigWig bigWig (plus strand signal of unique reads) 83.0 MB
ENCFF171CZP.bigWig bigWig (plus strand signal of all reads) 92.1 MB
ENCFF195MJE.tsv tsv (transcript quantifications) 27.4 MB
ENCFF207GLQ.bam bam (transcriptome alignments) 6.2 GB
ENCFF213PKG.bigWig bigWig (plus strand signal of unique reads) 77.4 MB
ENCFF234IEW.bigWig bigWig (minus strand signal of all reads) 77.5 MB
ENCFF234KME.bam bam (alignments) 4.3 GB
ENCFF247PQH.bam bam (transcriptome alignments) 5.1 GB
ENCFF252GKX.bigWig bigWig (minus strand signal of all reads) 91.0 MB
ENCFF260TOD.bigWig bigWig (plus strand signal of all reads) 87.1 MB
ENCFF268PZN.bam bam (alignments) 4.8 GB
ENCFF271PKL.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF272DAT.tsv tsv (gene quantifications) 9.1 MB
ENCFF290GIL.bam bam (alignments) 3.6 GB
ENCFF290PJL.bam bam (transcriptome alignments) 5.5 GB
ENCFF295UKO.bigWig bigWig (plus strand signal of unique reads) 77.5 MB
ENCFF295ZUP.bigWig bigWig (minus strand signal of unique reads) 75.8 MB
ENCFF297JCV.bigWig bigWig (minus strand signal of unique reads) 74.9 MB
ENCFF302HWO.tsv tsv (transcript quantifications) 29.8 MB
ENCFF304KWP.bigWig bigWig (minus strand signal of all reads) 90.8 MB
ENCFF308NUY.bigWig bigWig (plus strand signal of unique reads) 78.7 MB
ENCFF326YKQ.tar tar (differential splicing quantifications) 4.2 MB
ENCFF332JUB.bigWig bigWig (minus strand signal of unique reads) 73.1 MB
ENCFF338TYD.tsv tsv (transcript quantifications) 24.9 MB
ENCFF341OIE.bigWig bigWig (minus strand signal of unique reads) 81.1 MB
ENCFF363MSZ.bigWig bigWig (minus strand signal of unique reads) 72.0 MB
ENCFF384VWV.bam bam (transcriptome alignments) 5.6 GB
ENCFF385DRV.bigWig bigWig (plus strand signal of unique reads) 77.6 MB
ENCFF398EPZ.bigWig bigWig (plus strand signal of all reads) 80.6 MB
ENCFF404WKJ.bigWig bigWig (minus strand signal of all reads) 81.2 MB
ENCFF414AXJ.tsv tsv (gene quantifications) 9.1 MB
ENCFF419TNV.bigWig bigWig (minus strand signal of all reads) 74.7 MB
ENCFF421QMJ.bigWig bigWig (plus strand signal of all reads) 87.1 MB
ENCFF430TVL.tar tar (differential splicing quantifications) 15.6 MB
ENCFF431HZL.bigWig bigWig (plus strand signal of unique reads) 75.2 MB
ENCFF464EIO.bigWig bigWig (plus strand signal of unique reads) 83.0 MB
ENCFF487DVX.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF501ADE.bigWig bigWig (plus strand signal of all reads) 77.9 MB
ENCFF522CBN.bigWig bigWig (plus strand signal of all reads) 91.9 MB
ENCFF523VJN.bigWig bigWig (plus strand signal of unique reads) 76.6 MB
ENCFF541EPZ.tsv tsv (gene quantifications) 9.4 MB
ENCFF555RMN.tsv tsv (gene quantifications) 10.4 MB
ENCFF575LOX.bigWig bigWig (plus strand signal of unique reads) 83.0 MB
ENCFF582SRV.bigWig bigWig (minus strand signal of all reads) 91.1 MB
ENCFF598ZRJ.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF608AJJ.bam bam (alignments) 4.4 GB
ENCFF622OVY.tsv tsv (gene quantifications) 9.4 MB
ENCFF628ZKI.bigWig bigWig (plus strand signal of all reads) 84.6 MB
ENCFF637LXP.bigWig bigWig (minus strand signal of all reads) 84.8 MB
ENCFF641LZW.bigWig bigWig (plus strand signal of all reads) 82.3 MB
ENCFF658DCV.bam bam (alignments) 5.3 GB
ENCFF678IAH.bigWig bigWig (minus strand signal of unique reads) 81.1 MB
ENCFF678ZQI.fastq fastq (reads) 2.3 GB
ENCFF680HVK.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF681YKV.tsv tsv (transcript quantifications) 25.3 MB
ENCFF683SOS.bam bam (transcriptome alignments) 5.7 GB
ENCFF684EXS.bigWig bigWig (plus strand signal of all reads) 78.8 MB
ENCFF699HMJ.tsv tsv (differential expression quantifications) 4.1 MB
ENCFF709UAC.bigWig bigWig (plus strand signal of unique reads) 73.8 MB
ENCFF727HJS.fastq fastq (reads) 2.5 GB
ENCFF743GOG.bam bam (alignments) 3.6 GB
ENCFF750KMK.bigWig bigWig (plus strand signal of all reads) 85.9 MB
ENCFF756HPH.bigWig bigWig (minus strand signal of all reads) 83.1 MB
ENCFF757RRD.bigWig bigWig (minus strand signal of unique reads) 80.9 MB
ENCFF784YJU.bam bam (alignments) 4.1 GB
ENCFF791NLM.bigWig bigWig (minus strand signal of unique reads) 75.7 MB
ENCFF795ILY.bigWig bigWig (minus strand signal of all reads) 77.0 MB
ENCFF799GCO.bigWig bigWig (plus strand signal of all reads) 92.2 MB
ENCFF813UKN.tar tar (differential splicing quantifications) 3.6 MB
ENCFF821OOI.bigWig bigWig (minus strand signal of all reads) 79.2 MB
ENCFF828RHM.tsv tsv (transcript quantifications) 25.3 MB
ENCFF851RXO.bigWig bigWig (minus strand signal of unique reads) 71.2 MB
ENCFF927NOX.bam bam (alignments) 4.4 GB
ENCFF935SZS.bigWig bigWig (plus strand signal of all reads) 76.0 MB
ENCFF966JIJ.tsv tsv (gene quantifications) 10.4 MB
ENCFF972OOI.tsv tsv (transcript quantifications) 29.8 MB
ENCFF989LTX.tsv tsv (transcript quantifications) 24.9 MB
ENCFF990LAR.bigWig bigWig (plus strand signal of unique reads) 72.6 MB
ENCSR603TCV ENCSR · via encode_api

Control shRNA against no target in HepG2 cells followed by RNA-seq. (NT-BGHLV12-93-94)

Homo sapiens

84 data files
FileTypeSize
ENCFF005OVB.bigWig bigWig (plus strand signal of unique reads) 63.0 MB
ENCFF009MMZ.bam bam (transcriptome alignments) 7.2 GB
ENCFF017EYQ.bigWig bigWig (plus strand signal of all reads) 82.9 MB
ENCFF020KQW.bigWig bigWig (plus strand signal of all reads) 73.1 MB
ENCFF023MFT.fastq fastq (reads) 3.0 GB
ENCFF025YLM.fastq fastq (reads) 3.9 GB
ENCFF043MMU.bigWig bigWig (plus strand signal of all reads) 75.6 MB
ENCFF072ECY.bigWig bigWig (minus strand signal of unique reads) 70.0 MB
ENCFF127DAL.bam bam (transcriptome alignments) 10.8 GB
ENCFF133PAJ.bigWig bigWig (minus strand signal of unique reads) 59.9 MB
ENCFF134AYM.bigWig bigWig (minus strand signal of all reads) 64.2 MB
ENCFF137LLZ.bigWig bigWig (plus strand signal of all reads) 75.7 MB
ENCFF150EGO.tsv tsv (transcript quantifications) 27.3 MB
ENCFF163AKK.bigWig bigWig (minus strand signal of unique reads) 65.1 MB
ENCFF221QNL.tsv tsv (transcript quantifications) 25.0 MB
ENCFF222SSY.bigWig bigWig (minus strand signal of all reads) 64.7 MB
ENCFF261RLR.bam bam (alignments) 6.9 GB
ENCFF262BZV.tsv tsv (gene quantifications) 9.1 MB
ENCFF262TJE.bam bam (transcriptome alignments) 8.2 GB
ENCFF279OTJ.bigWig bigWig (plus strand signal of unique reads) 76.5 MB
ENCFF283PTR.bigWig bigWig (plus strand signal of unique reads) 71.1 MB
ENCFF317AWM.fastq fastq (reads) 3.0 GB
ENCFF334SUT.tsv tsv (gene quantifications) 9.1 MB
ENCFF348JFZ.bigWig bigWig (minus strand signal of unique reads) 69.0 MB
ENCFF350LDS.bigWig bigWig (minus strand signal of all reads) 81.3 MB
ENCFF367QQN.bigWig bigWig (plus strand signal of unique reads) 66.2 MB
ENCFF372HDJ.bigWig bigWig (plus strand signal of unique reads) 62.9 MB
ENCFF381REI.tsv tsv (gene quantifications) 10.4 MB
ENCFF383WEK.bigWig bigWig (minus strand signal of unique reads) 61.3 MB
ENCFF390DYK.tsv tsv (gene quantifications) 9.5 MB
ENCFF413RDZ.bigWig bigWig (plus strand signal of unique reads) 75.8 MB
ENCFF415LBD.bigWig bigWig (minus strand signal of all reads) 71.7 MB
ENCFF458NPD.bigWig bigWig (plus strand signal of unique reads) 66.8 MB
ENCFF484BFN.bigWig bigWig (plus strand signal of unique reads) 76.4 MB
ENCFF510JSK.bigWig bigWig (plus strand signal of all reads) 82.8 MB
ENCFF510TZZ.bigWig bigWig (minus strand signal of all reads) 81.3 MB
ENCFF515SFA.bigWig bigWig (minus strand signal of all reads) 74.2 MB
ENCFF520FMU.bigWig bigWig (minus strand signal of unique reads) 61.5 MB
ENCFF540BVH.bigWig bigWig (minus strand signal of unique reads) 74.5 MB
ENCFF554ZIN.bigWig bigWig (minus strand signal of all reads) 73.9 MB
ENCFF560LVZ.bigWig bigWig (minus strand signal of all reads) 65.6 MB
ENCFF568LWV.bigWig bigWig (plus strand signal of all reads) 82.9 MB
ENCFF571ARP.bam bam (alignments) 4.5 GB
ENCFF583JSH.tsv tsv (gene quantifications) 9.4 MB
ENCFF597DBP.tsv tsv (gene quantifications) 10.4 MB
ENCFF612VBJ.bigWig bigWig (plus strand signal of unique reads) 61.5 MB
ENCFF613CGT.bam bam (alignments) 5.6 GB
ENCFF621YSN.bam bam (transcriptome alignments) 9.6 GB
ENCFF636UAX.bigWig bigWig (minus strand signal of unique reads) 63.9 MB
ENCFF674CZO.bam bam (alignments) 5.8 GB
ENCFF675NFA.bigWig bigWig (plus strand signal of all reads) 76.9 MB
ENCFF690YHA.tsv tsv (transcript quantifications) 27.3 MB
ENCFF691AET.bigWig bigWig (plus strand signal of all reads) 65.7 MB
ENCFF694JWV.bam bam (alignments) 7.4 GB
ENCFF697WWV.fastq fastq (reads) 3.9 GB
ENCFF700SQS.bigWig bigWig (plus strand signal of unique reads) 72.7 MB
ENCFF700ZBE.tsv tsv (transcript quantifications) 29.9 MB
ENCFF706FVN.bam bam (alignments) 4.5 GB
ENCFF709LHN.bam bam (alignments) 7.4 GB
ENCFF733VIR.bam bam (alignments) 4.6 GB
ENCFF755GKJ.bam bam (alignments) 5.8 GB
ENCFF772PHF.bigWig bigWig (plus strand signal of all reads) 72.4 MB
ENCFF778GKJ.bigWig bigWig (plus strand signal of unique reads) 65.5 MB
ENCFF780VRE.tsv tsv (transcript quantifications) 25.3 MB
ENCFF804FKM.bigWig bigWig (minus strand signal of all reads) 75.2 MB
ENCFF816GAS.tsv tsv (transcript quantifications) 29.8 MB
ENCFF831BTU.tsv tsv (transcript quantifications) 25.4 MB
ENCFF834TYC.bam bam (alignments) 5.3 GB
ENCFF841UJF.bigWig bigWig (minus strand signal of all reads) 81.3 MB
ENCFF858KPW.bigWig bigWig (minus strand signal of all reads) 71.7 MB
ENCFF862FQQ.bigWig bigWig (minus strand signal of unique reads) 70.7 MB
ENCFF868HLL.bigWig bigWig (plus strand signal of unique reads) 71.7 MB
ENCFF873DPG.bigWig bigWig (minus strand signal of unique reads) 73.8 MB
ENCFF877ZGP.bigWig bigWig (minus strand signal of unique reads) 74.5 MB
ENCFF892PGW.bam bam (alignments) 6.1 GB
ENCFF902YHV.bam bam (alignments) 5.6 GB
ENCFF920UIY.bigWig bigWig (plus strand signal of all reads) 66.0 MB
ENCFF935CZA.bigWig bigWig (minus strand signal of unique reads) 64.6 MB
ENCFF956NPS.bigWig bigWig (minus strand signal of all reads) 71.2 MB
ENCFF969JNX.bam bam (transcriptome alignments) 9.5 GB
ENCFF986GQD.bigWig bigWig (plus strand signal of all reads) 67.0 MB
ENCFF988VGK.bigWig bigWig (plus strand signal of all reads) 73.1 MB
ENCFF990JLQ.bam bam (transcriptome alignments) 7.3 GB
ENCFF990URE.tsv tsv (transcript quantifications) 25.0 MB
ENCSR016IDR ENCSR · via encode_api

shRNA knockdown against AKAP1 in HepG2 cells followed by RNA-seq. (AKAP1-BGHLV12)

Homo sapiens

92 data files
FileTypeSize
ENCFF021LEJ.bigWig bigWig (plus strand signal of unique reads) 73.3 MB
ENCFF034MFR.tsv tsv (differential expression quantifications) 3.0 MB
ENCFF041HHI.bigWig bigWig (plus strand signal of unique reads) 71.6 MB
ENCFF041JPR.bigWig bigWig (minus strand signal of all reads) 82.3 MB
ENCFF062FZN.bam bam (alignments) 4.9 GB
ENCFF068ESA.bam bam (transcriptome alignments) 8.1 GB
ENCFF078ZRC.bigWig bigWig (plus strand signal of unique reads) 76.8 MB
ENCFF092KJH.bigWig bigWig (minus strand signal of unique reads) 73.3 MB
ENCFF093FMZ.tsv tsv (transcript quantifications) 25.3 MB
ENCFF101BOD.fastq fastq (reads) 3.2 GB
ENCFF108HHU.bam bam (alignments) 4.9 GB
ENCFF126TUS.bigWig bigWig (plus strand signal of all reads) 83.1 MB
ENCFF131RUR.bigWig bigWig (plus strand signal of all reads) 84.4 MB
ENCFF158AXX.bigWig bigWig (minus strand signal of unique reads) 75.1 MB
ENCFF162PNH.bigWig bigWig (minus strand signal of all reads) 80.2 MB
ENCFF172OSJ.bigWig bigWig (minus strand signal of all reads) 74.5 MB
ENCFF183QEX.bigWig bigWig (minus strand signal of unique reads) 70.6 MB
ENCFF188VJN.tsv tsv (gene quantifications) 9.5 MB
ENCFF213VHM.tsv tsv (gene quantifications) 10.4 MB
ENCFF221WWS.bigWig bigWig (minus strand signal of all reads) 81.0 MB
ENCFF229KIE.tsv tsv (transcript quantifications) 29.8 MB
ENCFF231UUS.bam bam (alignments) 4.8 GB
ENCFF243MAR.tsv tsv (transcript quantifications) 27.4 MB
ENCFF265GJP.bigWig bigWig (plus strand signal of all reads) 83.1 MB
ENCFF294XEB.bigWig bigWig (plus strand signal of all reads) 77.3 MB
ENCFF305YMU.bigWig bigWig (minus strand signal of unique reads) 70.0 MB
ENCFF307FDM.bigWig bigWig (plus strand signal of all reads) 76.5 MB
ENCFF319QCH.tsv tsv (transcript quantifications) 27.4 MB
ENCFF324JGN.bam bam (transcriptome alignments) 9.2 GB
ENCFF326QWQ.bigWig bigWig (plus strand signal of all reads) 82.1 MB
ENCFF329PWK.bigWig bigWig (plus strand signal of all reads) 76.5 MB
ENCFF338OYO.bigWig bigWig (minus strand signal of unique reads) 73.2 MB
ENCFF354PZG.bam bam (transcriptome alignments) 8.2 GB
ENCFF365ORC.tsv tsv (transcript quantifications) 25.3 MB
ENCFF371XWR.bam bam (alignments) 6.3 GB
ENCFF375KAA.bigWig bigWig (plus strand signal of unique reads) 73.0 MB
ENCFF384YZT.fastq fastq (reads) 3.2 GB
ENCFF390LVY.bigWig bigWig (minus strand signal of unique reads) 70.7 MB
ENCFF404FDA.bigWig bigWig (minus strand signal of unique reads) 74.4 MB
ENCFF426DHN.bam bam (alignments) 4.9 GB
ENCFF436AKO.bigWig bigWig (plus strand signal of all reads) 77.9 MB
ENCFF446GNQ.bam bam (alignments) 5.7 GB
ENCFF468TYN.bam bam (alignments) 6.3 GB
ENCFF472SBA.bigWig bigWig (plus strand signal of unique reads) 72.7 MB
ENCFF476LNI.bigWig bigWig (plus strand signal of all reads) 75.7 MB
ENCFF478PFZ.bigWig bigWig (plus strand signal of unique reads) 77.4 MB
ENCFF520YKO.tsv tsv (differential expression quantifications) 1.8 MB
ENCFF541OQS.bigWig bigWig (plus strand signal of unique reads) 75.8 MB
ENCFF554EIV.bam bam (alignments) 5.8 GB
ENCFF593VAX.bam bam (alignments) 6.0 GB
ENCFF594ITT.bigWig bigWig (minus strand signal of all reads) 81.0 MB
ENCFF597XUX.bigWig bigWig (minus strand signal of all reads) 74.6 MB
ENCFF622DQB.tar tar (differential splicing quantifications) 4.2 MB
ENCFF624CTQ.bigWig bigWig (plus strand signal of unique reads) 77.4 MB
ENCFF633XBM.bam bam (alignments) 6.0 GB
ENCFF650KHH.tsv tsv (gene quantifications) 10.4 MB
ENCFF653YRR.fastq fastq (reads) 3.3 GB
ENCFF655EEM.bigWig bigWig (plus strand signal of unique reads) 73.1 MB
ENCFF660EHL.bigWig bigWig (minus strand signal of all reads) 75.2 MB
ENCFF660QZJ.bigWig bigWig (minus strand signal of all reads) 81.2 MB
ENCFF681LSX.bigWig bigWig (minus strand signal of all reads) 82.3 MB
ENCFF698DFY.bigWig bigWig (plus strand signal of unique reads) 75.5 MB
ENCFF698DXN.bigWig bigWig (plus strand signal of unique reads) 75.5 MB
ENCFF720TAZ.tsv tsv (transcript quantifications) 24.9 MB
ENCFF722SSP.tsv tsv (gene quantifications) 9.1 MB
ENCFF722TGX.bigWig bigWig (minus strand signal of all reads) 74.3 MB
ENCFF728BVR.bigWig bigWig (minus strand signal of unique reads) 75.0 MB
ENCFF736JVA.bigWig bigWig (minus strand signal of unique reads) 73.6 MB
ENCFF776UKS.tsv tsv (differential expression quantifications) 4.5 MB
ENCFF787NHS.bam bam (alignments) 5.2 GB
ENCFF795KCG.bam bam (transcriptome alignments) 8.0 GB
ENCFF802HHM.tar tar (differential splicing quantifications) 16.9 MB
ENCFF829EPQ.tsv tsv (gene quantifications) 9.5 MB
ENCFF834YBD.bigWig bigWig (plus strand signal of all reads) 84.4 MB
ENCFF841IFK.bigWig bigWig (minus strand signal of unique reads) 71.0 MB
ENCFF860VRX.tsv tsv (transcript quantifications) 24.9 MB
ENCFF863KXT.bigWig bigWig (minus strand signal of all reads) 75.7 MB
ENCFF869PZR.tsv tsv (gene quantifications) 9.1 MB
ENCFF883BYG.bigWig bigWig (minus strand signal of unique reads) 70.7 MB
ENCFF889DDC.tar tar (differential splicing quantifications) 3.3 MB
ENCFF893NBU.bigWig bigWig (plus strand signal of all reads) 76.5 MB
ENCFF905JMA.bigWig bigWig (plus strand signal of all reads) 83.1 MB
ENCFF926TXW.bigWig bigWig (minus strand signal of all reads) 73.9 MB
ENCFF927BID.bam bam (transcriptome alignments) 9.0 GB
ENCFF931YAA.bam bam (transcriptome alignments) 8.0 GB
ENCFF938POY.tsv tsv (differential expression quantifications) 2.0 MB
ENCFF944FCZ.bigWig bigWig (plus strand signal of unique reads) 72.2 MB
ENCFF945BZG.tsv tsv (transcript quantifications) 29.8 MB
ENCFF962CTO.bigWig bigWig (minus strand signal of unique reads) 69.6 MB
ENCFF963GNF.bam bam (alignments) 5.0 GB
ENCFF970ZOE.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF979ZNO.fastq fastq (reads) 3.3 GB
ENCSR957EEG ENCSR · via encode_api

shRNA knockdown against EIF4A3 in HepG2 cells followed by RNA-seq. (EIF4A3-BGHLV12)

Homo sapiens

92 data files
FileTypeSize
ENCFF006VFB.bigWig bigWig (minus strand signal of all reads) 105.1 MB
ENCFF007WEH.bigWig bigWig (plus strand signal of all reads) 106.4 MB
ENCFF011XMK.bigWig bigWig (plus strand signal of unique reads) 84.5 MB
ENCFF031SGQ.bam bam (transcriptome alignments) 9.2 GB
ENCFF037BCP.bam bam (alignments) 4.4 GB
ENCFF047HSW.bigWig bigWig (minus strand signal of all reads) 84.5 MB
ENCFF089WFA.bam bam (alignments) 5.3 GB
ENCFF096UPB.bigWig bigWig (minus strand signal of unique reads) 94.9 MB
ENCFF098XAD.bigWig bigWig (minus strand signal of all reads) 105.0 MB
ENCFF106ZEN.bigWig bigWig (minus strand signal of all reads) 93.2 MB
ENCFF121WNI.tsv tsv (transcript quantifications) 24.9 MB
ENCFF131BCB.bam bam (alignments) 6.4 GB
ENCFF136YCF.bigWig bigWig (plus strand signal of all reads) 94.4 MB
ENCFF141NIZ.bigWig bigWig (minus strand signal of all reads) 93.2 MB
ENCFF159HIT.bigWig bigWig (minus strand signal of unique reads) 79.5 MB
ENCFF160XLT.bam bam (alignments) 5.2 GB
ENCFF182KWL.bam bam (transcriptome alignments) 6.7 GB
ENCFF185MZS.bigWig bigWig (plus strand signal of unique reads) 85.0 MB
ENCFF197QMB.bigWig bigWig (minus strand signal of all reads) 98.3 MB
ENCFF208QIJ.bam bam (transcriptome alignments) 8.2 GB
ENCFF211GCA.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF224ALJ.bam bam (alignments) 5.3 GB
ENCFF228LCZ.bigWig bigWig (plus strand signal of unique reads) 96.9 MB
ENCFF229NPD.bigWig bigWig (plus strand signal of all reads) 87.0 MB
ENCFF236CND.tsv tsv (differential expression quantifications) 1.8 MB
ENCFF242ZNU.bam bam (alignments) 5.4 GB
ENCFF251HHP.bigWig bigWig (plus strand signal of unique reads) 78.3 MB
ENCFF265XLQ.bigWig bigWig (plus strand signal of unique reads) 84.7 MB
ENCFF272NBZ.bigWig bigWig (minus strand signal of unique reads) 95.9 MB
ENCFF283NKB.bam bam (alignments) 4.4 GB
ENCFF316MIK.tsv tsv (gene quantifications) 9.4 MB
ENCFF317HOA.bam bam (alignments) 4.5 GB
ENCFF319BQP.bigWig bigWig (minus strand signal of unique reads) 79.3 MB
ENCFF339KLD.bigWig bigWig (minus strand signal of all reads) 95.4 MB
ENCFF352NHY.bigWig bigWig (plus strand signal of unique reads) 97.8 MB
ENCFF355RHH.bigWig bigWig (plus strand signal of all reads) 82.3 MB
ENCFF367HOU.bigWig bigWig (plus strand signal of unique reads) 91.6 MB
ENCFF409BND.bigWig bigWig (minus strand signal of unique reads) 76.6 MB
ENCFF423OPP.bigWig bigWig (minus strand signal of all reads) 81.1 MB
ENCFF448RUF.tsv tsv (differential expression quantifications) 4.4 MB
ENCFF451WMW.bigWig bigWig (minus strand signal of unique reads) 95.0 MB
ENCFF457KQB.bam bam (transcriptome alignments) 7.7 GB
ENCFF465QUW.tsv tsv (transcript quantifications) 29.8 MB
ENCFF472GML.bam bam (alignments) 6.4 GB
ENCFF477AUF.bigWig bigWig (plus strand signal of unique reads) 81.0 MB
ENCFF479GKL.tsv tsv (gene quantifications) 10.4 MB
ENCFF507UMT.tar tar (differential splicing quantifications) 5.1 MB
ENCFF540JEE.tsv tsv (transcript quantifications) 25.3 MB
ENCFF551NZL.bam bam (transcriptome alignments) 8.1 GB
ENCFF561PTO.bigWig bigWig (minus strand signal of unique reads) 83.4 MB
ENCFF565PBU.tsv tsv (gene quantifications) 9.4 MB
ENCFF566ZCL.bam bam (alignments) 5.3 GB
ENCFF568EZR.bigWig bigWig (minus strand signal of all reads) 92.0 MB
ENCFF575QOO.fastq fastq (reads) 3.0 GB
ENCFF588VRV.bam bam (alignments) 6.3 GB
ENCFF623ALX.bigWig bigWig (minus strand signal of all reads) 93.2 MB
ENCFF630JGI.bigWig bigWig (plus strand signal of unique reads) 89.1 MB
ENCFF638BQH.bigWig bigWig (minus strand signal of unique reads) 82.9 MB
ENCFF652HHR.bigWig bigWig (minus strand signal of unique reads) 83.1 MB
ENCFF653STL.bigWig bigWig (minus strand signal of unique reads) 87.2 MB
ENCFF696CBG.bigWig bigWig (minus strand signal of unique reads) 90.0 MB
ENCFF702HKM.bigWig bigWig (plus strand signal of all reads) 92.8 MB
ENCFF710RWV.tsv tsv (gene quantifications) 9.1 MB
ENCFF712AQC.tsv tsv (transcript quantifications) 24.9 MB
ENCFF713KZF.bigWig bigWig (minus strand signal of all reads) 85.9 MB
ENCFF715TQI.bigWig bigWig (plus strand signal of all reads) 99.7 MB
ENCFF721HFM.tsv tsv (transcript quantifications) 27.4 MB
ENCFF730NJM.tsv tsv (transcript quantifications) 25.3 MB
ENCFF742JOT.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF749GGH.bigWig bigWig (plus strand signal of all reads) 85.6 MB
ENCFF799XWY.bigWig bigWig (plus strand signal of unique reads) 93.3 MB
ENCFF805OZZ.fastq fastq (reads) 2.9 GB
ENCFF808HSZ.bigWig bigWig (plus strand signal of all reads) 105.9 MB
ENCFF815GWY.tsv tsv (gene quantifications) 10.4 MB
ENCFF831MHS.bam bam (alignments) 5.3 GB
ENCFF835RHC.bigWig bigWig (plus strand signal of all reads) 94.7 MB
ENCFF864SIS.bigWig bigWig (plus strand signal of all reads) 96.6 MB
ENCFF871IGY.tsv tsv (transcript quantifications) 27.4 MB
ENCFF875SRJ.tsv tsv (gene quantifications) 9.1 MB
ENCFF890NBK.tsv tsv (differential expression quantifications) 3.0 MB
ENCFF910WMZ.bigWig bigWig (minus strand signal of unique reads) 91.5 MB
ENCFF915WTV.bigWig bigWig (minus strand signal of all reads) 104.9 MB
ENCFF917LPQ.bigWig bigWig (plus strand signal of all reads) 106.2 MB
ENCFF917TDC.bigWig bigWig (plus strand signal of unique reads) 96.7 MB
ENCFF931NYE.tsv tsv (transcript quantifications) 29.8 MB
ENCFF938YNE.fastq fastq (reads) 3.6 GB
ENCFF954MLV.fastq fastq (reads) 3.5 GB
ENCFF956ZXZ.bam bam (transcriptome alignments) 6.8 GB
ENCFF977LVO.bigWig bigWig (plus strand signal of unique reads) 81.0 MB
ENCFF977XJP.tar tar (differential splicing quantifications) 16.8 MB
ENCFF983CUA.tar tar (differential splicing quantifications) 4.1 MB
ENCFF994YBR.bigWig bigWig (plus strand signal of all reads) 94.4 MB
ENCSR185JGT ENCSR · via encode_api

shRNA knockdown against SLTM in HepG2 cells followed by RNA-seq. (SLTM BGHLV14)

Homo sapiens

92 data files
FileTypeSize
ENCFF006PXS.bam bam (alignments) 3.8 GB
ENCFF029UWU.bigWig bigWig (minus strand signal of unique reads) 78.9 MB
ENCFF044NLU.bigWig bigWig (plus strand signal of all reads) 82.1 MB
ENCFF049TRJ.bam bam (transcriptome alignments) 4.9 GB
ENCFF067FUR.bigWig bigWig (plus strand signal of unique reads) 67.9 MB
ENCFF071LFX.bigWig bigWig (plus strand signal of unique reads) 68.6 MB
ENCFF077NLP.bam bam (alignments) 3.7 GB
ENCFF079EOM.bigWig bigWig (minus strand signal of unique reads) 70.1 MB
ENCFF102PXE.bam bam (alignments) 3.3 GB
ENCFF119FTO.tsv tsv (differential expression quantifications) 5.5 MB
ENCFF140BSK.bigWig bigWig (minus strand signal of unique reads) 66.9 MB
ENCFF158NHF.tsv tsv (gene quantifications) 10.4 MB
ENCFF159JUF.bigWig bigWig (plus strand signal of unique reads) 72.2 MB
ENCFF162LYA.bam bam (transcriptome alignments) 4.9 GB
ENCFF170STV.bam bam (alignments) 3.2 GB
ENCFF185SAF.bigWig bigWig (minus strand signal of all reads) 74.3 MB
ENCFF190TKP.bigWig bigWig (minus strand signal of all reads) 80.7 MB
ENCFF194OKD.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF201ZBM.bam bam (transcriptome alignments) 6.1 GB
ENCFF208KBE.bigWig bigWig (plus strand signal of all reads) 77.0 MB
ENCFF222CYM.bam bam (alignments) 4.5 GB
ENCFF230MSB.bigWig bigWig (minus strand signal of all reads) 65.0 MB
ENCFF243HTT.bigWig bigWig (minus strand signal of unique reads) 75.6 MB
ENCFF252PLE.bigWig bigWig (minus strand signal of unique reads) 63.0 MB
ENCFF252ZRF.bigWig bigWig (minus strand signal of all reads) 73.2 MB
ENCFF256LZZ.tsv tsv (gene quantifications) 9.1 MB
ENCFF259OKR.bigWig bigWig (plus strand signal of unique reads) 64.4 MB
ENCFF260WQU.bigWig bigWig (plus strand signal of all reads) 80.6 MB
ENCFF267LIM.tsv tsv (transcript quantifications) 24.9 MB
ENCFF298FZU.bigWig bigWig (plus strand signal of all reads) 87.1 MB
ENCFF315DEC.bigWig bigWig (plus strand signal of unique reads) 80.7 MB
ENCFF326JEB.tsv tsv (transcript quantifications) 25.3 MB
ENCFF329FOL.tsv tsv (differential expression quantifications) 2.8 MB
ENCFF339FHC.tar tar (differential splicing quantifications) 2.9 MB
ENCFF341IYC.bigWig bigWig (minus strand signal of unique reads) 63.4 MB
ENCFF343FBW.bigWig bigWig (plus strand signal of all reads) 75.7 MB
ENCFF366APQ.bigWig bigWig (plus strand signal of unique reads) 65.1 MB
ENCFF366JBT.bam bam (alignments) 4.3 GB
ENCFF368JZR.tsv tsv (gene quantifications) 9.4 MB
ENCFF368VDF.bigWig bigWig (plus strand signal of unique reads) 62.4 MB
ENCFF385UUL.tsv tsv (differential expression quantifications) 4.2 MB
ENCFF396HFH.bigWig bigWig (minus strand signal of unique reads) 78.8 MB
ENCFF398DNF.tsv tsv (transcript quantifications) 27.3 MB
ENCFF398XRL.bigWig bigWig (plus strand signal of all reads) 87.9 MB
ENCFF407LUM.tsv tsv (gene quantifications) 10.4 MB
ENCFF421DRR.bigWig bigWig (plus strand signal of unique reads) 80.7 MB
ENCFF456AYA.bigWig bigWig (minus strand signal of all reads) 67.2 MB
ENCFF465IAG.bigWig bigWig (minus strand signal of unique reads) 66.9 MB
ENCFF497TWT.bigWig bigWig (plus strand signal of all reads) 68.3 MB
ENCFF510ZHB.bigWig bigWig (minus strand signal of all reads) 75.5 MB
ENCFF515QGL.bigWig bigWig (plus strand signal of all reads) 70.2 MB
ENCFF526BNH.tsv tsv (gene quantifications) 9.1 MB
ENCFF533FXQ.tsv tsv (transcript quantifications) 27.2 MB
ENCFF534CGO.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF537GLZ.bigWig bigWig (plus strand signal of unique reads) 75.6 MB
ENCFF557IUI.fastq fastq (reads) 2.1 GB
ENCFF562GKB.bigWig bigWig (minus strand signal of unique reads) 66.1 MB
ENCFF570ZKH.bigWig bigWig (plus strand signal of unique reads) 68.6 MB
ENCFF578BZZ.bam bam (transcriptome alignments) 5.4 GB
ENCFF599AAV.tsv tsv (transcript quantifications) 24.9 MB
ENCFF604PZN.fastq fastq (reads) 2.2 GB
ENCFF622OFH.tar tar (differential splicing quantifications) 3.5 MB
ENCFF635DCP.fastq fastq (reads) 2.5 GB
ENCFF664KFZ.bigWig bigWig (minus strand signal of all reads) 86.1 MB
ENCFF670LLQ.bigWig bigWig (plus strand signal of all reads) 87.9 MB
ENCFF694ZYM.bigWig bigWig (minus strand signal of all reads) 86.7 MB
ENCFF698OVN.bigWig bigWig (plus strand signal of unique reads) 80.7 MB
ENCFF711JUQ.bigWig bigWig (minus strand signal of unique reads) 74.0 MB
ENCFF715QLS.tsv tsv (transcript quantifications) 29.8 MB
ENCFF722UON.bigWig bigWig (minus strand signal of all reads) 68.9 MB
ENCFF779ZGM.bam bam (alignments) 3.8 GB
ENCFF790JMU.bam bam (alignments) 3.7 GB
ENCFF794JMQ.tsv tsv (transcript quantifications) 25.3 MB
ENCFF797WWW.bigWig bigWig (plus strand signal of all reads) 66.4 MB
ENCFF800GSJ.bam bam (alignments) 4.5 GB
ENCFF807GMG.bigWig bigWig (minus strand signal of all reads) 74.3 MB
ENCFF824CTK.tsv tsv (gene quantifications) 9.4 MB
ENCFF831HRU.bigWig bigWig (plus strand signal of all reads) 74.4 MB
ENCFF846GHB.bigWig bigWig (plus strand signal of unique reads) 77.5 MB
ENCFF851DLZ.bam bam (alignments) 4.0 GB
ENCFF870KIO.fastq fastq (reads) 2.4 GB
ENCFF899LRG.bam bam (alignments) 3.2 GB
ENCFF907YWP.bam bam (alignments) 4.0 GB
ENCFF921SEE.bigWig bigWig (minus strand signal of unique reads) 60.5 MB
ENCFF941LOJ.bigWig bigWig (minus strand signal of unique reads) 78.9 MB
ENCFF950YJT.bigWig bigWig (plus strand signal of all reads) 75.6 MB
ENCFF953AYF.tsv tsv (transcript quantifications) 29.8 MB
ENCFF957IXI.bigWig bigWig (minus strand signal of all reads) 86.7 MB
ENCFF964VSD.tar tar (differential splicing quantifications) 15.2 MB
ENCFF978QDZ.bigWig bigWig (minus strand signal of all reads) 79.4 MB
ENCFF991VFG.bam bam (transcriptome alignments) 5.4 GB
ENCFF992FWG.bam bam (transcriptome alignments) 5.6 GB
ENCSR906WTM ENCSR · via encode_api

shRNA knockdown against RTF1 in HepG2 cells followed by RNA-seq. (RTF1 BGHLV14)

Homo sapiens

92 data files
FileTypeSize
ENCFF004IZI.bigWig bigWig (plus strand signal of all reads) 89.8 MB
ENCFF015RSH.bigWig bigWig (plus strand signal of unique reads) 82.8 MB
ENCFF050XMB.fastq fastq (reads) 2.8 GB
ENCFF054WDG.bigWig bigWig (minus strand signal of unique reads) 77.3 MB
ENCFF086HQK.bigWig bigWig (plus strand signal of all reads) 91.1 MB
ENCFF088GCW.bam bam (alignments) 4.2 GB
ENCFF089FUN.tsv tsv (transcript quantifications) 27.3 MB
ENCFF092EGW.tsv tsv (gene quantifications) 9.1 MB
ENCFF100GXJ.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF115MPO.tsv tsv (gene quantifications) 9.4 MB
ENCFF120WYI.bigWig bigWig (minus strand signal of all reads) 81.6 MB
ENCFF122ZCP.bam bam (transcriptome alignments) 5.1 GB
ENCFF144WCH.bam bam (alignments) 5.1 GB
ENCFF194GTC.bigWig bigWig (minus strand signal of all reads) 80.9 MB
ENCFF194IPC.tar tar (differential splicing quantifications) 3.6 MB
ENCFF195GJK.bigWig bigWig (minus strand signal of all reads) 76.7 MB
ENCFF204ABR.bigWig bigWig (minus strand signal of unique reads) 80.4 MB
ENCFF220IUD.bam bam (transcriptome alignments) 7.1 GB
ENCFF231GSA.bigWig bigWig (minus strand signal of unique reads) 79.9 MB
ENCFF238EYC.bigWig bigWig (minus strand signal of unique reads) 78.9 MB
ENCFF239EUS.bigWig bigWig (minus strand signal of unique reads) 71.4 MB
ENCFF243LXQ.bigWig bigWig (minus strand signal of unique reads) 75.6 MB
ENCFF250YJX.bam bam (alignments) 3.6 GB
ENCFF257TQB.bigWig bigWig (plus strand signal of unique reads) 77.2 MB
ENCFF276LDV.tsv tsv (gene quantifications) 10.4 MB
ENCFF299YOU.bigWig bigWig (minus strand signal of unique reads) 79.3 MB
ENCFF336OME.fastq fastq (reads) 2.4 GB
ENCFF341XOS.bam bam (alignments) 4.2 GB
ENCFF352IBW.bigWig bigWig (plus strand signal of unique reads) 74.9 MB
ENCFF355FSQ.bam bam (transcriptome alignments) 5.2 GB
ENCFF364VDO.tar tar (differential splicing quantifications) 3.0 MB
ENCFF387ANA.bam bam (alignments) 4.1 GB
ENCFF395SEL.bigWig bigWig (plus strand signal of unique reads) 77.5 MB
ENCFF404HKV.bigWig bigWig (minus strand signal of all reads) 89.7 MB
ENCFF426HDO.bigWig bigWig (plus strand signal of unique reads) 82.1 MB
ENCFF427SOA.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF428FTM.bigWig bigWig (minus strand signal of unique reads) 80.9 MB
ENCFF432LLF.bigWig bigWig (minus strand signal of unique reads) 80.3 MB
ENCFF440YFG.fastq fastq (reads) 2.3 GB
ENCFF444UUE.tsv tsv (transcript quantifications) 25.3 MB
ENCFF457XDB.bam bam (transcriptome alignments) 6.2 GB
ENCFF464AFF.bigWig bigWig (plus strand signal of all reads) 81.9 MB
ENCFF470TWT.tsv tsv (gene quantifications) 9.1 MB
ENCFF472RWE.bigWig bigWig (minus strand signal of unique reads) 76.0 MB
ENCFF473FYL.bigWig bigWig (plus strand signal of unique reads) 78.2 MB
ENCFF474HEC.bam bam (alignments) 4.2 GB
ENCFF510BTA.bigWig bigWig (minus strand signal of all reads) 87.4 MB
ENCFF514MOA.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF516AUO.tsv tsv (differential expression quantifications) 4.2 MB
ENCFF541TIF.fastq fastq (reads) 2.7 GB
ENCFF545DZR.bigWig bigWig (plus strand signal of unique reads) 81.5 MB
ENCFF551VSS.bigWig bigWig (plus strand signal of all reads) 89.7 MB
ENCFF583XHL.tsv tsv (transcript quantifications) 27.3 MB
ENCFF589DBQ.bigWig bigWig (minus strand signal of all reads) 82.9 MB
ENCFF600ACJ.tar tar (differential splicing quantifications) 15.6 MB
ENCFF634NBP.tsv tsv (transcript quantifications) 25.3 MB
ENCFF636UFZ.tsv tsv (gene quantifications) 10.4 MB
ENCFF673SEL.bigWig bigWig (plus strand signal of all reads) 84.3 MB
ENCFF679ZZH.tsv tsv (transcript quantifications) 29.8 MB
ENCFF711TQS.bigWig bigWig (plus strand signal of all reads) 88.2 MB
ENCFF721YUA.bigWig bigWig (minus strand signal of all reads) 82.3 MB
ENCFF726FJM.bigWig bigWig (minus strand signal of all reads) 88.8 MB
ENCFF729TIH.bigWig bigWig (plus strand signal of unique reads) 79.1 MB
ENCFF730QYQ.bam bam (alignments) 4.3 GB
ENCFF756HIE.bam bam (alignments) 4.2 GB
ENCFF762QWJ.bigWig bigWig (plus strand signal of unique reads) 80.9 MB
ENCFF772PLW.tsv tsv (differential expression quantifications) 5.5 MB
ENCFF773XUL.tsv tsv (transcript quantifications) 29.8 MB
ENCFF777RPL.bigWig bigWig (plus strand signal of all reads) 77.8 MB
ENCFF794NLZ.bigWig bigWig (minus strand signal of all reads) 88.6 MB
ENCFF800GTV.bigWig bigWig (minus strand signal of all reads) 77.8 MB
ENCFF821CXL.bigWig bigWig (minus strand signal of unique reads) 73.1 MB
ENCFF822QBY.bigWig bigWig (minus strand signal of unique reads) 76.5 MB
ENCFF823WSV.bam bam (alignments) 5.1 GB
ENCFF838VYK.tsv tsv (gene quantifications) 9.4 MB
ENCFF855BOF.bigWig bigWig (minus strand signal of all reads) 88.8 MB
ENCFF863IJF.bigWig bigWig (plus strand signal of all reads) 82.8 MB
ENCFF872WLN.bam bam (alignments) 3.5 GB
ENCFF877SLH.bam bam (alignments) 3.5 GB
ENCFF877UAA.bigWig bigWig (plus strand signal of unique reads) 73.1 MB
ENCFF887DNA.tsv tsv (transcript quantifications) 24.9 MB
ENCFF888XLZ.tsv tsv (transcript quantifications) 24.9 MB
ENCFF901GGA.bigWig bigWig (plus strand signal of unique reads) 80.5 MB
ENCFF907XPQ.bigWig bigWig (plus strand signal of all reads) 91.1 MB
ENCFF913SLB.bigWig bigWig (plus strand signal of unique reads) 82.3 MB
ENCFF921PEM.bigWig bigWig (plus strand signal of all reads) 83.4 MB
ENCFF949WHW.bam bam (transcriptome alignments) 5.8 GB
ENCFF957BEQ.bam bam (transcriptome alignments) 6.3 GB
ENCFF961KXA.bigWig bigWig (plus strand signal of all reads) 89.8 MB
ENCFF964ZXL.bigWig bigWig (plus strand signal of all reads) 79.2 MB
ENCFF966AGU.bam bam (alignments) 4.9 GB
ENCFF970HFZ.bigWig bigWig (minus strand signal of all reads) 89.7 MB
ENCSR318HAT ENCSR · via encode_api

shRNA knockdown against RBM34 in HepG2 cells followed by RNA-seq. (RBM34 BGHLV14)

Homo sapiens

92 data files
FileTypeSize
ENCFF014MKS.tar tar (differential splicing quantifications) 3.5 MB
ENCFF024MIQ.bigWig bigWig (minus strand signal of unique reads) 72.9 MB
ENCFF026UTK.bigWig bigWig (minus strand signal of unique reads) 63.2 MB
ENCFF033RWD.bigWig bigWig (plus strand signal of unique reads) 71.3 MB
ENCFF033SSS.bigWig bigWig (plus strand signal of unique reads) 74.4 MB
ENCFF034HXF.bam bam (alignments) 3.6 GB
ENCFF040XBD.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF045GXL.bigWig bigWig (minus strand signal of all reads) 77.7 MB
ENCFF058AZW.bigWig bigWig (plus strand signal of all reads) 78.8 MB
ENCFF081UGQ.tsv tsv (differential expression quantifications) 4.1 MB
ENCFF093UOO.bigWig bigWig (minus strand signal of all reads) 69.5 MB
ENCFF106PRZ.bam bam (transcriptome alignments) 5.2 GB
ENCFF108UVC.fastq fastq (reads) 2.5 GB
ENCFF116XWI.tsv tsv (transcript quantifications) 24.9 MB
ENCFF123LMD.fastq fastq (reads) 2.4 GB
ENCFF128SIS.bigWig bigWig (plus strand signal of all reads) 78.1 MB
ENCFF150EOM.bam bam (alignments) 3.8 GB
ENCFF151YVX.bigWig bigWig (plus strand signal of unique reads) 64.8 MB
ENCFF154WBR.tar tar (differential splicing quantifications) 15.3 MB
ENCFF161ANX.tsv tsv (transcript quantifications) 25.3 MB
ENCFF173RWB.bigWig bigWig (minus strand signal of all reads) 74.1 MB
ENCFF178NNN.bam bam (alignments) 3.5 GB
ENCFF197FIP.bigWig bigWig (plus strand signal of unique reads) 71.6 MB
ENCFF204VUD.bigWig bigWig (minus strand signal of all reads) 81.7 MB
ENCFF208FLT.bigWig bigWig (minus strand signal of all reads) 68.5 MB
ENCFF214KGP.bam bam (alignments) 4.5 GB
ENCFF220QMY.bigWig bigWig (plus strand signal of unique reads) 67.0 MB
ENCFF229VYK.tsv tsv (transcript quantifications) 27.3 MB
ENCFF251EQV.bigWig bigWig (plus strand signal of all reads) 83.0 MB
ENCFF269UFD.fastq fastq (reads) 2.3 GB
ENCFF270TOS.bam bam (transcriptome alignments) 5.6 GB
ENCFF278QGA.tsv tsv (transcript quantifications) 24.9 MB
ENCFF282QMJ.fastq fastq (reads) 2.3 GB
ENCFF292QAQ.bam bam (alignments) 3.5 GB
ENCFF297LWO.bigWig bigWig (minus strand signal of unique reads) 70.0 MB
ENCFF322SZY.bam bam (transcriptome alignments) 5.8 GB
ENCFF325NYG.tsv tsv (transcript quantifications) 25.3 MB
ENCFF373KKN.bam bam (alignments) 4.2 GB
ENCFF381WYJ.tsv tsv (transcript quantifications) 29.8 MB
ENCFF389RCS.tsv tsv (gene quantifications) 9.4 MB
ENCFF396ZHW.bam bam (alignments) 4.3 GB
ENCFF407HGD.tsv tsv (gene quantifications) 9.1 MB
ENCFF422PYS.bigWig bigWig (minus strand signal of unique reads) 65.2 MB
ENCFF449FLZ.bam bam (transcriptome alignments) 5.2 GB
ENCFF476ZUX.bigWig bigWig (plus strand signal of unique reads) 74.7 MB
ENCFF489HEF.bigWig bigWig (minus strand signal of all reads) 74.7 MB
ENCFF495YUO.bam bam (alignments) 4.5 GB
ENCFF502LBA.tsv tsv (gene quantifications) 9.1 MB
ENCFF511LAQ.bam bam (alignments) 3.7 GB
ENCFF514DZC.bigWig bigWig (minus strand signal of unique reads) 72.6 MB
ENCFF537EFN.bigWig bigWig (minus strand signal of unique reads) 66.7 MB
ENCFF542HCY.bigWig bigWig (minus strand signal of unique reads) 72.9 MB
ENCFF582SZA.tsv tsv (gene quantifications) 10.4 MB
ENCFF595CTQ.bigWig bigWig (minus strand signal of unique reads) 69.5 MB
ENCFF599ODW.bam bam (transcriptome alignments) 6.4 GB
ENCFF605IJN.tsv tsv (gene quantifications) 10.4 MB
ENCFF627AEQ.tsv tsv (transcript quantifications) 27.3 MB
ENCFF640HEF.bigWig bigWig (minus strand signal of all reads) 77.2 MB
ENCFF640HSS.bigWig bigWig (plus strand signal of all reads) 70.6 MB
ENCFF657GIC.bigWig bigWig (plus strand signal of unique reads) 67.8 MB
ENCFF668HZX.bam bam (transcriptome alignments) 5.7 GB
ENCFF672MBJ.bigWig bigWig (plus strand signal of unique reads) 74.6 MB
ENCFF701JUL.bigWig bigWig (minus strand signal of unique reads) 66.4 MB
ENCFF702BMD.tsv tsv (transcript quantifications) 29.8 MB
ENCFF702CRH.tsv tsv (gene quantifications) 9.4 MB
ENCFF702FBI.bigWig bigWig (plus strand signal of all reads) 75.3 MB
ENCFF707VCD.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF716XLQ.bigWig bigWig (minus strand signal of unique reads) 70.0 MB
ENCFF794QRJ.tar tar (differential splicing quantifications) 2.9 MB
ENCFF801JHQ.bam bam (alignments) 4.2 GB
ENCFF804QPA.bigWig bigWig (minus strand signal of unique reads) 69.1 MB
ENCFF813XMA.bam bam (alignments) 3.7 GB
ENCFF815AZQ.bam bam (alignments) 4.1 GB
ENCFF831DBO.tsv tsv (differential expression quantifications) 2.8 MB
ENCFF833PEV.bigWig bigWig (plus strand signal of all reads) 69.7 MB
ENCFF838TCK.bigWig bigWig (plus strand signal of all reads) 72.1 MB
ENCFF845EJQ.bigWig bigWig (plus strand signal of all reads) 83.0 MB
ENCFF851BNH.bigWig bigWig (plus strand signal of unique reads) 68.3 MB
ENCFF882DDW.bigWig bigWig (minus strand signal of unique reads) 69.8 MB
ENCFF882VHZ.bigWig bigWig (plus strand signal of all reads) 80.3 MB
ENCFF888ABL.bigWig bigWig (minus strand signal of all reads) 80.8 MB
ENCFF894RHX.bigWig bigWig (plus strand signal of unique reads) 70.6 MB
ENCFF898VFA.bigWig bigWig (minus strand signal of all reads) 81.7 MB
ENCFF933WOH.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF946MKP.bigWig bigWig (plus strand signal of all reads) 78.8 MB
ENCFF946QKU.bigWig bigWig (plus strand signal of unique reads) 71.3 MB
ENCFF952UQD.bigWig bigWig (plus strand signal of all reads) 72.2 MB
ENCFF955XXW.bigWig bigWig (minus strand signal of all reads) 77.7 MB
ENCFF959MRH.bigWig bigWig (minus strand signal of all reads) 71.0 MB
ENCFF964UUK.bigWig bigWig (minus strand signal of all reads) 71.1 MB
ENCFF971ZBF.bigWig bigWig (plus strand signal of unique reads) 71.6 MB
ENCFF978QST.bigWig bigWig (plus strand signal of all reads) 75.9 MB
ENCSR410UHJ ENCSR · via encode_api

shRNA knockdown against RPS10 in HepG2 cells followed by RNA-seq. (RPS10 BGHLV14)

Homo sapiens

92 data files
FileTypeSize
ENCFF064SVM.tsv tsv (transcript quantifications) 27.3 MB
ENCFF070WYS.bigWig bigWig (plus strand signal of unique reads) 74.0 MB
ENCFF074OGL.bigWig bigWig (plus strand signal of all reads) 81.6 MB
ENCFF087ZLV.bam bam (transcriptome alignments) 6.2 GB
ENCFF096MJY.bam bam (alignments) 4.3 GB
ENCFF102IZR.bigWig bigWig (minus strand signal of unique reads) 71.7 MB
ENCFF107FSZ.bam bam (alignments) 3.6 GB
ENCFF110UBT.tsv tsv (transcript quantifications) 29.8 MB
ENCFF124RLS.bam bam (transcriptome alignments) 5.9 GB
ENCFF130PZI.bigWig bigWig (minus strand signal of all reads) 69.6 MB
ENCFF134QNC.bigWig bigWig (plus strand signal of unique reads) 69.5 MB
ENCFF140RUJ.bigWig bigWig (minus strand signal of unique reads) 69.2 MB
ENCFF144GGZ.fastq fastq (reads) 2.4 GB
ENCFF147KSJ.tsv tsv (transcript quantifications) 29.8 MB
ENCFF170JLX.tsv tsv (gene quantifications) 9.4 MB
ENCFF185HFV.bigWig bigWig (minus strand signal of all reads) 73.1 MB
ENCFF196RKN.bam bam (alignments) 3.7 GB
ENCFF210OAS.bigWig bigWig (minus strand signal of unique reads) 67.6 MB
ENCFF210ZGC.bigWig bigWig (plus strand signal of unique reads) 73.2 MB
ENCFF211XZO.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF219RJO.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF259JSK.bigWig bigWig (minus strand signal of all reads) 74.7 MB
ENCFF266EEV.bam bam (alignments) 4.6 GB
ENCFF277EKR.bigWig bigWig (plus strand signal of unique reads) 62.4 MB
ENCFF278CZA.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF284XOE.bigWig bigWig (minus strand signal of all reads) 65.9 MB
ENCFF286BFJ.bigWig bigWig (minus strand signal of all reads) 70.0 MB
ENCFF288ONZ.tsv tsv (gene quantifications) 10.4 MB
ENCFF296VBY.bigWig bigWig (plus strand signal of unique reads) 70.8 MB
ENCFF304FCH.bigWig bigWig (plus strand signal of all reads) 76.6 MB
ENCFF313KPT.bigWig bigWig (minus strand signal of unique reads) 64.6 MB
ENCFF321DPA.bam bam (alignments) 4.6 GB
ENCFF332QVL.bam bam (alignments) 4.1 GB
ENCFF342KQS.bam bam (alignments) 3.6 GB
ENCFF349QAG.bam bam (transcriptome alignments) 5.2 GB
ENCFF357RFF.tsv tsv (differential expression quantifications) 1.8 MB
ENCFF367FWA.bigWig bigWig (plus strand signal of all reads) 70.7 MB
ENCFF376BJH.bam bam (alignments) 3.7 GB
ENCFF399USD.bigWig bigWig (minus strand signal of all reads) 80.5 MB
ENCFF404FZG.bigWig bigWig (plus strand signal of all reads) 67.1 MB
ENCFF406FOJ.tsv tsv (transcript quantifications) 25.3 MB
ENCFF414VSH.bam bam (alignments) 4.3 GB
ENCFF415ELJ.bigWig bigWig (plus strand signal of unique reads) 69.5 MB
ENCFF420BIR.tsv tsv (transcript quantifications) 25.3 MB
ENCFF435HQB.bigWig bigWig (minus strand signal of all reads) 75.5 MB
ENCFF440HJU.bigWig bigWig (minus strand signal of unique reads) 68.0 MB
ENCFF453YZG.bigWig bigWig (plus strand signal of all reads) 75.6 MB
ENCFF464FNQ.bigWig bigWig (plus strand signal of all reads) 81.6 MB
ENCFF467MCD.bigWig bigWig (minus strand signal of unique reads) 64.8 MB
ENCFF488FIC.tsv tsv (differential expression quantifications) 4.3 MB
ENCFF493LXA.bigWig bigWig (plus strand signal of all reads) 74.1 MB
ENCFF520NNJ.bigWig bigWig (plus strand signal of all reads) 76.7 MB
ENCFF542HDK.tsv tsv (gene quantifications) 9.1 MB
ENCFF597EAT.bigWig bigWig (minus strand signal of unique reads) 72.1 MB
ENCFF603MOS.bigWig bigWig (plus strand signal of all reads) 69.1 MB
ENCFF605STY.bigWig bigWig (plus strand signal of unique reads) 66.1 MB
ENCFF614MDJ.fastq fastq (reads) 2.5 GB
ENCFF616VER.tsv tsv (transcript quantifications) 27.3 MB
ENCFF620WPX.bigWig bigWig (minus strand signal of all reads) 80.0 MB
ENCFF642JIT.bam bam (alignments) 4.3 GB
ENCFF664CRD.tsv tsv (gene quantifications) 9.1 MB
ENCFF678CWS.tar tar (differential splicing quantifications) 3.6 MB
ENCFF688ZGK.bigWig bigWig (minus strand signal of unique reads) 60.8 MB
ENCFF689CVL.bigWig bigWig (minus strand signal of all reads) 75.6 MB
ENCFF695EFK.bam bam (transcriptome alignments) 5.5 GB
ENCFF700FSH.bigWig bigWig (plus strand signal of unique reads) 73.6 MB
ENCFF719SGH.bigWig bigWig (minus strand signal of unique reads) 63.8 MB
ENCFF733DHY.bigWig bigWig (plus strand signal of unique reads) 69.7 MB
ENCFF739QTJ.fastq fastq (reads) 2.3 GB
ENCFF743LTM.bigWig bigWig (plus strand signal of all reads) 71.2 MB
ENCFF746ZIN.tsv tsv (transcript quantifications) 24.9 MB
ENCFF754COC.bigWig bigWig (minus strand signal of unique reads) 72.5 MB
ENCFF781OTK.bigWig bigWig (minus strand signal of all reads) 68.1 MB
ENCFF785NLZ.tsv tsv (gene quantifications) 9.4 MB
ENCFF823CEM.bigWig bigWig (plus strand signal of unique reads) 65.1 MB
ENCFF833FFR.bam bam (transcriptome alignments) 5.5 GB
ENCFF876OEC.bigWig bigWig (minus strand signal of all reads) 74.4 MB
ENCFF887FDD.bigWig bigWig (plus strand signal of unique reads) 66.4 MB
ENCFF887ICT.tar tar (differential splicing quantifications) 3.0 MB
ENCFF887LZO.bigWig bigWig (minus strand signal of unique reads) 68.0 MB
ENCFF888EDI.bigWig bigWig (plus strand signal of all reads) 75.6 MB
ENCFF893VRG.tsv tsv (transcript quantifications) 24.9 MB
ENCFF905YNB.bam bam (alignments) 3.8 GB
ENCFF912MTQ.bigWig bigWig (minus strand signal of unique reads) 68.3 MB
ENCFF944FBA.fastq fastq (reads) 2.4 GB
ENCFF949WFH.bigWig bigWig (minus strand signal of all reads) 80.5 MB
ENCFF955RCG.tar tar (differential splicing quantifications) 15.0 MB
ENCFF964BRZ.bam bam (alignments) 3.6 GB
ENCFF965ESU.bigWig bigWig (plus strand signal of unique reads) 69.1 MB
ENCFF974BKW.bam bam (transcriptome alignments) 5.3 GB
ENCFF996OJZ.bigWig bigWig (plus strand signal of all reads) 80.9 MB
ENCFF999DDB.tsv tsv (gene quantifications) 10.4 MB
ENCSR478FJK ENCSR · via encode_api

shRNA knockdown against IGF2BP2 in HepG2 cells followed by RNA-seq. (IGF2BP2-BGHLV12)

Homo sapiens

92 data files
FileTypeSize
ENCFF015LIE.tsv tsv (gene quantifications) 9.1 MB
ENCFF016QKF.bigWig bigWig (minus strand signal of all reads) 89.3 MB
ENCFF030DHV.bam bam (transcriptome alignments) 6.4 GB
ENCFF051JNI.bigWig bigWig (plus strand signal of unique reads) 76.3 MB
ENCFF052NAJ.bigWig bigWig (plus strand signal of all reads) 82.0 MB
ENCFF054BJX.bigWig bigWig (minus strand signal of all reads) 89.8 MB
ENCFF069LQO.bigWig bigWig (minus strand signal of unique reads) 71.3 MB
ENCFF112LYM.tar tar (differential splicing quantifications) 4.0 MB
ENCFF126TOA.bam bam (alignments) 5.0 GB
ENCFF134YNR.bigWig bigWig (minus strand signal of unique reads) 75.2 MB
ENCFF139QDN.bam bam (alignments) 4.9 GB
ENCFF144AAD.bigWig bigWig (plus strand signal of all reads) 82.9 MB
ENCFF148BFD.bigWig bigWig (minus strand signal of unique reads) 71.8 MB
ENCFF157WOU.bigWig bigWig (plus strand signal of unique reads) 73.8 MB
ENCFF167JIN.bigWig bigWig (minus strand signal of unique reads) 73.9 MB
ENCFF170QJU.tsv tsv (differential expression quantifications) 4.4 MB
ENCFF170SYE.bam bam (transcriptome alignments) 7.9 GB
ENCFF171RDV.bigWig bigWig (minus strand signal of all reads) 80.1 MB
ENCFF173TGB.bigWig bigWig (plus strand signal of all reads) 84.9 MB
ENCFF182FJJ.tsv tsv (transcript quantifications) 24.9 MB
ENCFF185VZL.bigWig bigWig (plus strand signal of all reads) 84.6 MB
ENCFF186VRQ.bigWig bigWig (minus strand signal of all reads) 75.8 MB
ENCFF205AYJ.tar tar (differential splicing quantifications) 3.3 MB
ENCFF217LUU.bigWig bigWig (minus strand signal of unique reads) 69.3 MB
ENCFF225HNA.tsv tsv (transcript quantifications) 29.8 MB
ENCFF232QPG.bigWig bigWig (minus strand signal of unique reads) 80.6 MB
ENCFF239VWX.bigWig bigWig (plus strand signal of unique reads) 78.9 MB
ENCFF249VRG.bigWig bigWig (plus strand signal of unique reads) 71.4 MB
ENCFF255CCO.bigWig bigWig (minus strand signal of all reads) 76.6 MB
ENCFF256CQX.bigWig bigWig (plus strand signal of all reads) 78.2 MB
ENCFF276JOD.bigWig bigWig (minus strand signal of all reads) 82.9 MB
ENCFF280ZQD.bam bam (transcriptome alignments) 6.5 GB
ENCFF302MAE.tsv tsv (differential expression quantifications) 1.8 MB
ENCFF313URT.bigWig bigWig (plus strand signal of all reads) 91.6 MB
ENCFF332FDK.tsv tsv (gene quantifications) 10.4 MB
ENCFF350VMK.tsv tsv (transcript quantifications) 29.8 MB
ENCFF358TOA.bam bam (transcriptome alignments) 9.0 GB
ENCFF371XHG.tsv tsv (transcript quantifications) 27.3 MB
ENCFF391NQR.fastq fastq (reads) 3.4 GB
ENCFF437OPT.bigWig bigWig (minus strand signal of all reads) 83.4 MB
ENCFF444LNM.tsv tsv (gene quantifications) 10.4 MB
ENCFF451TGR.bam bam (alignments) 4.9 GB
ENCFF453XVV.fastq fastq (reads) 2.7 GB
ENCFF455CRZ.bigWig bigWig (plus strand signal of all reads) 84.9 MB
ENCFF457FSB.bigWig bigWig (plus strand signal of all reads) 90.8 MB
ENCFF459ZJV.bigWig bigWig (plus strand signal of all reads) 75.9 MB
ENCFF507KGM.bigWig bigWig (minus strand signal of all reads) 89.9 MB
ENCFF511DAR.bigWig bigWig (plus strand signal of unique reads) 82.9 MB
ENCFF511LCJ.bigWig bigWig (minus strand signal of unique reads) 76.7 MB
ENCFF527GOH.bigWig bigWig (minus strand signal of unique reads) 77.1 MB
ENCFF530ZSB.bigWig bigWig (minus strand signal of all reads) 81.3 MB
ENCFF534YDS.bam bam (alignments) 5.8 GB
ENCFF535OST.bigWig bigWig (plus strand signal of unique reads) 73.2 MB
ENCFF563UBV.bam bam (alignments) 4.1 GB
ENCFF590DVM.bigWig bigWig (plus strand signal of unique reads) 76.6 MB
ENCFF601WVA.tsv tsv (differential expression quantifications) 5.7 MB
ENCFF604UKR.bigWig bigWig (plus strand signal of all reads) 84.1 MB
ENCFF611GXN.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF613LKY.tsv tsv (transcript quantifications) 25.3 MB
ENCFF620GFV.tsv tsv (transcript quantifications) 25.3 MB
ENCFF638BBY.tsv tsv (transcript quantifications) 24.9 MB
ENCFF640BKD.bam bam (transcriptome alignments) 7.3 GB
ENCFF653EAM.bam bam (alignments) 6.0 GB
ENCFF656TZQ.bigWig bigWig (minus strand signal of unique reads) 74.3 MB
ENCFF658LHL.tsv tsv (gene quantifications) 9.4 MB
ENCFF659JDO.bigWig bigWig (plus strand signal of all reads) 91.6 MB
ENCFF667XYJ.bam bam (alignments) 4.0 GB
ENCFF676YHW.bigWig bigWig (minus strand signal of unique reads) 74.6 MB
ENCFF689JDA.bigWig bigWig (plus strand signal of all reads) 77.2 MB
ENCFF691ERM.bigWig bigWig (plus strand signal of unique reads) 77.4 MB
ENCFF698LYR.bam bam (transcriptome alignments) 8.0 GB
ENCFF712XOY.bigWig bigWig (plus strand signal of unique reads) 83.3 MB
ENCFF731IVZ.bigWig bigWig (minus strand signal of all reads) 82.8 MB
ENCFF732XHR.bigWig bigWig (minus strand signal of unique reads) 81.0 MB
ENCFF732YHE.bigWig bigWig (minus strand signal of all reads) 83.3 MB
ENCFF751ITZ.bam bam (alignments) 4.9 GB
ENCFF753WIN.bam bam (alignments) 4.1 GB
ENCFF754EVJ.bam bam (alignments) 4.9 GB
ENCFF770MCY.tsv tsv (transcript quantifications) 27.4 MB
ENCFF800VSZ.tsv tsv (differential expression quantifications) 3.0 MB
ENCFF807LKT.bigWig bigWig (plus strand signal of unique reads) 83.3 MB
ENCFF817RTM.bam bam (alignments) 4.8 GB
ENCFF853YZP.bigWig bigWig (minus strand signal of unique reads) 81.0 MB
ENCFF862PUA.tsv tsv (gene quantifications) 9.5 MB
ENCFF902XXW.tsv tsv (gene quantifications) 9.1 MB
ENCFF903MNI.bigWig bigWig (plus strand signal of unique reads) 75.9 MB
ENCFF905IZL.bigWig bigWig (plus strand signal of unique reads) 79.2 MB
ENCFF907UQP.tar tar (differential splicing quantifications) 16.7 MB
ENCFF912FLN.bam bam (alignments) 6.0 GB
ENCFF972OQE.fastq fastq (reads) 2.8 GB
ENCFF972SDY.fastq fastq (reads) 3.3 GB
ENCFF985TVW.bigWig bigWig (minus strand signal of all reads) 74.3 MB
ENCSR330YOU ENCSR · via encode_api

shRNA knockdown against QKI in HepG2 cells followed by RNA-seq. (QKI-BGHLV12)

Homo sapiens

92 data files
FileTypeSize
ENCFF008GAJ.bigWig bigWig (plus strand signal of unique reads) 99.3 MB
ENCFF012YOM.bigWig bigWig (minus strand signal of unique reads) 91.3 MB
ENCFF040LOR.bigWig bigWig (plus strand signal of unique reads) 93.9 MB
ENCFF043IHK.bigWig bigWig (minus strand signal of unique reads) 98.1 MB
ENCFF055ALR.tsv tsv (gene quantifications) 9.1 MB
ENCFF069VOQ.bam bam (alignments) 6.5 GB
ENCFF071GZW.bigWig bigWig (minus strand signal of unique reads) 97.5 MB
ENCFF103PLX.tar tar (differential splicing quantifications) 4.1 MB
ENCFF116NLD.tsv tsv (transcript quantifications) 24.9 MB
ENCFF133FNS.bam bam (transcriptome alignments) 8.8 GB
ENCFF137YZX.bigWig bigWig (plus strand signal of all reads) 97.7 MB
ENCFF184YMN.tsv tsv (transcript quantifications) 24.9 MB
ENCFF186ERL.bigWig bigWig (plus strand signal of unique reads) 93.4 MB
ENCFF186MPF.bam bam (transcriptome alignments) 7.8 GB
ENCFF199PVS.tsv tsv (gene quantifications) 9.5 MB
ENCFF200ACJ.bigWig bigWig (plus strand signal of unique reads) 99.9 MB
ENCFF204XCJ.bigWig bigWig (plus strand signal of all reads) 98.3 MB
ENCFF207GQB.bam bam (transcriptome alignments) 7.6 GB
ENCFF213WVF.bigWig bigWig (plus strand signal of all reads) 98.0 MB
ENCFF225WSQ.bigWig bigWig (plus strand signal of all reads) 99.5 MB
ENCFF244CED.bigWig bigWig (minus strand signal of unique reads) 97.6 MB
ENCFF262GAC.bam bam (alignments) 5.3 GB
ENCFF275STD.bigWig bigWig (minus strand signal of unique reads) 89.6 MB
ENCFF279VLA.tsv tsv (differential expression quantifications) 1.8 MB
ENCFF282YKN.tsv tsv (differential expression quantifications) 4.4 MB
ENCFF297VZZ.bam bam (alignments) 5.2 GB
ENCFF304XCG.fastq fastq (reads) 3.5 GB
ENCFF306SJV.bigWig bigWig (minus strand signal of unique reads) 97.5 MB
ENCFF306URG.bam bam (alignments) 5.4 GB
ENCFF307SYK.tsv tsv (differential expression quantifications) 5.5 MB
ENCFF320HGE.bigWig bigWig (minus strand signal of all reads) 107.5 MB
ENCFF326MEO.tar tar (differential splicing quantifications) 3.3 MB
ENCFF327PGG.bigWig bigWig (plus strand signal of unique reads) 100.6 MB
ENCFF349GDP.bigWig bigWig (minus strand signal of unique reads) 88.1 MB
ENCFF354FHT.bam bam (alignments) 6.3 GB
ENCFF362ULR.bigWig bigWig (plus strand signal of unique reads) 94.2 MB
ENCFF379QTR.bigWig bigWig (minus strand signal of all reads) 107.7 MB
ENCFF383XFZ.bam bam (transcriptome alignments) 7.6 GB
ENCFF388TOS.bigWig bigWig (plus strand signal of unique reads) 94.7 MB
ENCFF408DJM.bigWig bigWig (plus strand signal of all reads) 100.3 MB
ENCFF408OOO.bigWig bigWig (minus strand signal of all reads) 109.2 MB
ENCFF413EDI.bigWig bigWig (plus strand signal of all reads) 101.6 MB
ENCFF439BOJ.tsv tsv (transcript quantifications) 25.3 MB
ENCFF439HQG.bam bam (alignments) 6.5 GB
ENCFF440JJH.bam bam (alignments) 6.3 GB
ENCFF448FXJ.fastq fastq (reads) 3.5 GB
ENCFF451CGT.tsv tsv (differential expression quantifications) 3.0 MB
ENCFF461SCO.bigWig bigWig (plus strand signal of all reads) 109.0 MB
ENCFF480HMX.tar tar (differential splicing quantifications) 17.0 MB
ENCFF481QUX.bigWig bigWig (minus strand signal of all reads) 109.2 MB
ENCFF490KFB.bigWig bigWig (minus strand signal of all reads) 108.4 MB
ENCFF493DKC.bigWig bigWig (plus strand signal of unique reads) 100.0 MB
ENCFF515HON.tsv tsv (transcript quantifications) 25.3 MB
ENCFF516ZWS.bigWig bigWig (plus strand signal of unique reads) 92.1 MB
ENCFF526MSX.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF568SXP.bigWig bigWig (plus strand signal of unique reads) 99.8 MB
ENCFF582ZNO.bigWig bigWig (plus strand signal of unique reads) 90.4 MB
ENCFF597QMW.bigWig bigWig (plus strand signal of all reads) 109.2 MB
ENCFF610CID.bam bam (alignments) 5.3 GB
ENCFF613FGN.bam bam (alignments) 5.3 GB
ENCFF627LXX.fastq fastq (reads) 3.5 GB
ENCFF641DQK.bigWig bigWig (minus strand signal of unique reads) 91.8 MB
ENCFF695CMS.tsv tsv (gene quantifications) 10.4 MB
ENCFF717FAS.bigWig bigWig (plus strand signal of all reads) 110.0 MB
ENCFF733RPV.bigWig bigWig (minus strand signal of all reads) 108.4 MB
ENCFF761FFK.bigWig bigWig (minus strand signal of unique reads) 97.0 MB
ENCFF764EWQ.bigWig bigWig (plus strand signal of all reads) 110.8 MB
ENCFF766BWO.bigWig bigWig (minus strand signal of all reads) 98.0 MB
ENCFF769BQG.bigWig bigWig (minus strand signal of all reads) 96.1 MB
ENCFF783YNW.bam bam (transcriptome alignments) 7.8 GB
ENCFF787UYI.bigWig bigWig (plus strand signal of unique reads) 99.9 MB
ENCFF789UVN.bigWig bigWig (minus strand signal of all reads) 96.8 MB
ENCFF792DID.tsv tsv (transcript quantifications) 29.8 MB
ENCFF819QNN.tsv tsv (gene quantifications) 9.1 MB
ENCFF819VYL.bam bam (alignments) 6.2 GB
ENCFF827WGG.bam bam (alignments) 6.3 GB
ENCFF836OVE.tsv tsv (gene quantifications) 10.4 MB
ENCFF843YRG.bigWig bigWig (minus strand signal of all reads) 98.5 MB
ENCFF862QWE.tsv tsv (transcript quantifications) 27.4 MB
ENCFF884TVF.bam bam (transcriptome alignments) 8.6 GB
ENCFF886DBQ.tsv tsv (gene quantifications) 9.4 MB
ENCFF887BZL.bam bam (alignments) 5.3 GB
ENCFF892ZWR.tsv tsv (transcript quantifications) 27.4 MB
ENCFF893FKS.tsv tsv (transcript quantifications) 29.8 MB
ENCFF907HSN.bigWig bigWig (minus strand signal of unique reads) 97.6 MB
ENCFF914WNL.fastq fastq (reads) 3.4 GB
ENCFF950HLB.bigWig bigWig (minus strand signal of all reads) 99.9 MB
ENCFF956BTU.bigWig bigWig (minus strand signal of unique reads) 91.9 MB
ENCFF967CHU.bigWig bigWig (plus strand signal of all reads) 110.0 MB
ENCFF971VNR.bigWig bigWig (minus strand signal of all reads) 96.0 MB
ENCFF985EGJ.bigWig bigWig (plus strand signal of all reads) 110.8 MB
ENCFF987WJU.bigWig bigWig (minus strand signal of unique reads) 92.4 MB
ENCSR850PWM ENCSR · via encode_api

shRNA knockdown against ZRANB2 in K562 cells followed by RNA-seq. (ZRANB2 BGKLV13)

Homo sapiens

92 data files
FileTypeSize
ENCFF003EVO.bigWig bigWig (plus strand signal of all reads) 84.2 MB
ENCFF021EFX.bigWig bigWig (minus strand signal of all reads) 83.0 MB
ENCFF025DFS.bigWig bigWig (minus strand signal of all reads) 83.4 MB
ENCFF025GWB.bam bam (alignments) 3.5 GB
ENCFF025VLB.bigWig bigWig (plus strand signal of all reads) 77.0 MB
ENCFF028CNP.bigWig bigWig (plus strand signal of all reads) 76.5 MB
ENCFF030XBB.bigWig bigWig (minus strand signal of unique reads) 73.0 MB
ENCFF031QIE.bam bam (alignments) 4.0 GB
ENCFF049CLQ.tsv tsv (transcript quantifications) 25.3 MB
ENCFF062JJS.bigWig bigWig (minus strand signal of all reads) 71.4 MB
ENCFF083OBT.bigWig bigWig (minus strand signal of unique reads) 73.5 MB
ENCFF092JJB.bigWig bigWig (minus strand signal of all reads) 81.5 MB
ENCFF098DQD.bigWig bigWig (minus strand signal of all reads) 74.9 MB
ENCFF125BTS.tsv tsv (gene quantifications) 10.4 MB
ENCFF152MEK.bigWig bigWig (minus strand signal of unique reads) 69.6 MB
ENCFF152QYS.tsv tsv (differential expression quantifications) 2.8 MB
ENCFF160TIK.bigWig bigWig (plus strand signal of all reads) 83.1 MB
ENCFF166RQC.tsv tsv (transcript quantifications) 29.8 MB
ENCFF169KAM.bigWig bigWig (plus strand signal of unique reads) 71.2 MB
ENCFF176OVV.tsv tsv (differential expression quantifications) 1.6 MB
ENCFF229EKP.tsv tsv (transcript quantifications) 27.3 MB
ENCFF235UPX.bigWig bigWig (plus strand signal of all reads) 78.0 MB
ENCFF241PUH.bigWig bigWig (plus strand signal of all reads) 84.2 MB
ENCFF251KHP.bigWig bigWig (minus strand signal of all reads) 83.0 MB
ENCFF258OOL.tsv tsv (transcript quantifications) 24.9 MB
ENCFF268FXY.bigWig bigWig (minus strand signal of all reads) 76.5 MB
ENCFF271SZG.tsv tsv (gene quantifications) 10.4 MB
ENCFF276CWG.bam bam (alignments) 4.0 GB
ENCFF283NNG.bigWig bigWig (plus strand signal of all reads) 84.5 MB
ENCFF308IFJ.bigWig bigWig (plus strand signal of all reads) 76.0 MB
ENCFF308UBT.fastq fastq (reads) 2.1 GB
ENCFF318COP.bigWig bigWig (minus strand signal of unique reads) 69.6 MB
ENCFF352YXN.bigWig bigWig (plus strand signal of all reads) 72.8 MB
ENCFF355CZB.bigWig bigWig (plus strand signal of unique reads) 67.1 MB
ENCFF360UHY.tsv tsv (gene quantifications) 9.1 MB
ENCFF361NGT.bigWig bigWig (plus strand signal of unique reads) 72.0 MB
ENCFF406JZC.bigWig bigWig (minus strand signal of unique reads) 74.2 MB
ENCFF407ZXZ.bigWig bigWig (minus strand signal of all reads) 83.3 MB
ENCFF420MSL.tsv tsv (gene quantifications) 9.1 MB
ENCFF428XLR.bigWig bigWig (plus strand signal of unique reads) 76.0 MB
ENCFF431DAM.tar tar (differential splicing quantifications) 15.0 MB
ENCFF431TZC.bigWig bigWig (plus strand signal of unique reads) 76.0 MB
ENCFF439MNO.bigWig bigWig (minus strand signal of all reads) 81.9 MB
ENCFF510MWG.bigWig bigWig (minus strand signal of unique reads) 66.1 MB
ENCFF515MQQ.bigWig bigWig (minus strand signal of unique reads) 65.2 MB
ENCFF553AHX.bam bam (transcriptome alignments) 4.8 GB
ENCFF574AGQ.bam bam (transcriptome alignments) 4.5 GB
ENCFF586GDJ.bam bam (alignments) 3.9 GB
ENCFF591VVC.tsv tsv (transcript quantifications) 25.3 MB
ENCFF597WWH.tsv tsv (transcript quantifications) 24.9 MB
ENCFF598EXB.tsv tsv (differential expression quantifications) 4.1 MB
ENCFF623JBW.bigWig bigWig (plus strand signal of unique reads) 71.5 MB
ENCFF646EMW.tsv tsv (gene quantifications) 9.4 MB
ENCFF652WPT.bam bam (transcriptome alignments) 5.3 GB
ENCFF657FFX.bam bam (transcriptome alignments) 4.7 GB
ENCFF668SXU.bam bam (alignments) 3.4 GB
ENCFF669MZF.bigWig bigWig (plus strand signal of unique reads) 75.5 MB
ENCFF673BRE.bam bam (alignments) 3.3 GB
ENCFF675NML.bigWig bigWig (plus strand signal of unique reads) 68.0 MB
ENCFF685EXV.bigWig bigWig (minus strand signal of unique reads) 69.6 MB
ENCFF687BYC.tsv tsv (transcript quantifications) 29.8 MB
ENCFF694HLV.bigWig bigWig (minus strand signal of unique reads) 70.1 MB
ENCFF702EYM.tar tar (differential splicing quantifications) 4.0 MB
ENCFF711XIL.bam bam (alignments) 3.3 GB
ENCFF737CVJ.bigWig bigWig (plus strand signal of all reads) 72.9 MB
ENCFF741YOK.bam bam (alignments) 3.5 GB
ENCFF767JAA.bigWig bigWig (plus strand signal of all reads) 82.6 MB
ENCFF776QPI.tar tar (differential splicing quantifications) 3.5 MB
ENCFF798UJT.bigWig bigWig (plus strand signal of all reads) 84.5 MB
ENCFF799XRW.bam bam (alignments) 4.2 GB
ENCFF804YQX.bigWig bigWig (minus strand signal of all reads) 75.5 MB
ENCFF818JUG.bam bam (alignments) 4.2 GB
ENCFF823IQV.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF838ONH.bam bam (transcriptome alignments) 5.0 GB
ENCFF842IKX.bam bam (alignments) 4.0 GB
ENCFF847IZB.bam bam (alignments) 3.3 GB
ENCFF880DON.fastq fastq (reads) 2.2 GB
ENCFF891KON.tsv tsv (transcript quantifications) 27.3 MB
ENCFF899MED.fastq fastq (reads) 2.2 GB
ENCFF903SAJ.bigWig bigWig (plus strand signal of unique reads) 75.6 MB
ENCFF906VPR.tsv tsv (gene quantifications) 9.4 MB
ENCFF907SGS.bigWig bigWig (minus strand signal of all reads) 71.3 MB
ENCFF909QLS.bigWig bigWig (plus strand signal of unique reads) 75.2 MB
ENCFF915IWM.bigWig bigWig (plus strand signal of unique reads) 71.3 MB
ENCFF927MHO.bigWig bigWig (minus strand signal of unique reads) 73.7 MB
ENCFF945ICK.bam bam (transcriptome alignments) 4.5 GB
ENCFF948LCH.bigWig bigWig (plus strand signal of unique reads) 74.9 MB
ENCFF948PVL.bigWig bigWig (minus strand signal of unique reads) 73.3 MB
ENCFF953CAQ.fastq fastq (reads) 2.1 GB
ENCFF955YTW.bigWig bigWig (minus strand signal of unique reads) 74.2 MB
ENCFF967ZXG.bigWig bigWig (minus strand signal of all reads) 75.4 MB
ENCFF968VDC.tsv tsv (differential expression quantifications) 5.6 MB
ENCSR232XRZ ENCSR · via encode_api

shRNA knockdown against SND1 in K562 cells followed by RNA-seq. (SND1 BGKLV13)

Homo sapiens

92 data files
FileTypeSize
ENCFF014DNZ.bigWig bigWig (minus strand signal of all reads) 76.9 MB
ENCFF017LZF.bigWig bigWig (plus strand signal of unique reads) 61.6 MB
ENCFF035ITX.bigWig bigWig (plus strand signal of unique reads) 64.9 MB
ENCFF037PCK.tsv tsv (gene quantifications) 10.4 MB
ENCFF045FYF.tsv tsv (transcript quantifications) 27.2 MB
ENCFF066WYA.bigWig bigWig (minus strand signal of all reads) 79.8 MB
ENCFF071CDG.bigWig bigWig (minus strand signal of unique reads) 71.5 MB
ENCFF084XHR.tsv tsv (transcript quantifications) 27.2 MB
ENCFF087KKW.bigWig bigWig (plus strand signal of unique reads) 64.3 MB
ENCFF099XZA.bigWig bigWig (plus strand signal of all reads) 77.8 MB
ENCFF125NCT.tsv tsv (gene quantifications) 9.4 MB
ENCFF136JXW.bigWig bigWig (minus strand signal of unique reads) 64.7 MB
ENCFF152AQZ.bigWig bigWig (minus strand signal of all reads) 72.8 MB
ENCFF153XZJ.bigWig bigWig (plus strand signal of all reads) 70.8 MB
ENCFF157ZJJ.bigWig bigWig (plus strand signal of unique reads) 68.1 MB
ENCFF159UDX.bam bam (alignments) 2.9 GB
ENCFF189PSQ.tsv tsv (differential expression quantifications) 1.8 MB
ENCFF199ZXD.bigWig bigWig (minus strand signal of unique reads) 60.0 MB
ENCFF202NVK.tar tar (differential splicing quantifications) 3.2 MB
ENCFF225AVL.tar tar (differential splicing quantifications) 2.9 MB
ENCFF255QYC.bigWig bigWig (minus strand signal of unique reads) 66.0 MB
ENCFF256UJU.tsv tsv (transcript quantifications) 24.9 MB
ENCFF264EQM.tsv tsv (gene quantifications) 10.4 MB
ENCFF278ZDS.bigWig bigWig (minus strand signal of all reads) 79.9 MB
ENCFF284XMH.bam bam (transcriptome alignments) 3.7 GB
ENCFF291PJR.bam bam (alignments) 3.4 GB
ENCFF308NNN.fastq fastq (reads) 1.8 GB
ENCFF313DPO.tsv tsv (differential expression quantifications) 4.1 MB
ENCFF319EFT.bigWig bigWig (plus strand signal of all reads) 74.0 MB
ENCFF320SDW.bam bam (transcriptome alignments) 4.1 GB
ENCFF339XMZ.tsv tsv (differential expression quantifications) 2.8 MB
ENCFF347ESH.tsv tsv (differential expression quantifications) 5.5 MB
ENCFF355MPA.fastq fastq (reads) 1.8 GB
ENCFF360YDD.bigWig bigWig (minus strand signal of all reads) 79.9 MB
ENCFF372TAK.bigWig bigWig (minus strand signal of all reads) 77.6 MB
ENCFF373INH.bigWig bigWig (minus strand signal of all reads) 69.4 MB
ENCFF406CWH.bam bam (transcriptome alignments) 3.7 GB
ENCFF417EPN.tar tar (differential splicing quantifications) 12.8 MB
ENCFF422GKU.bigWig bigWig (plus strand signal of all reads) 70.3 MB
ENCFF422QVT.fastq fastq (reads) 1.8 GB
ENCFF422SED.bam bam (alignments) 2.9 GB
ENCFF435YCO.bigWig bigWig (plus strand signal of all reads) 66.1 MB
ENCFF440CCH.bigWig bigWig (plus strand signal of unique reads) 72.2 MB
ENCFF445RQJ.bigWig bigWig (plus strand signal of unique reads) 68.9 MB
ENCFF463OZD.bigWig bigWig (minus strand signal of all reads) 68.7 MB
ENCFF468KHG.bam bam (alignments) 2.8 GB
ENCFF477DHV.tsv tsv (gene quantifications) 9.4 MB
ENCFF481GII.bigWig bigWig (minus strand signal of unique reads) 70.6 MB
ENCFF491WJS.bigWig bigWig (minus strand signal of all reads) 69.7 MB
ENCFF491XFZ.bigWig bigWig (minus strand signal of all reads) 72.8 MB
ENCFF497VLT.tsv tsv (gene quantifications) 9.1 MB
ENCFF501JXB.tsv tsv (transcript quantifications) 29.8 MB
ENCFF509KJB.tsv tsv (transcript quantifications) 24.9 MB
ENCFF521QBU.bam bam (alignments) 3.4 GB
ENCFF560GHI.bigWig bigWig (plus strand signal of all reads) 78.5 MB
ENCFF567OYZ.bigWig bigWig (minus strand signal of unique reads) 67.4 MB
ENCFF568SMA.bam bam (transcriptome alignments) 3.7 GB
ENCFF595SOH.bigWig bigWig (plus strand signal of unique reads) 73.1 MB
ENCFF630ZMK.tsv tsv (gene quantifications) 9.1 MB
ENCFF632XSB.bigWig bigWig (minus strand signal of unique reads) 66.6 MB
ENCFF642OZD.bam bam (transcriptome alignments) 4.2 GB
ENCFF650ONC.bigWig bigWig (minus strand signal of all reads) 65.1 MB
ENCFF665KKY.bigWig bigWig (plus strand signal of unique reads) 69.1 MB
ENCFF665KQM.bigWig bigWig (plus strand signal of unique reads) 73.1 MB
ENCFF675LBK.tsv tsv (transcript quantifications) 29.8 MB
ENCFF705MPQ.bigWig bigWig (minus strand signal of all reads) 77.5 MB
ENCFF709ASR.bam bam (transcriptome alignments) 3.7 GB
ENCFF722WLI.bam bam (alignments) 2.9 GB
ENCFF728DPR.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF731RTQ.bigWig bigWig (plus strand signal of all reads) 80.8 MB
ENCFF738EPH.bam bam (alignments) 3.0 GB
ENCFF774LJE.bam bam (alignments) 2.8 GB
ENCFF796GWH.bigWig bigWig (minus strand signal of unique reads) 62.6 MB
ENCFF801BZX.bigWig bigWig (minus strand signal of unique reads) 71.3 MB
ENCFF822EKY.bigWig bigWig (plus strand signal of all reads) 80.7 MB
ENCFF853XBJ.bigWig bigWig (plus strand signal of unique reads) 66.0 MB
ENCFF868JUI.bam bam (alignments) 3.3 GB
ENCFF886JXV.bam bam (alignments) 3.5 GB
ENCFF891DWK.bigWig bigWig (plus strand signal of unique reads) 68.3 MB
ENCFF908MRY.tsv tsv (transcript quantifications) 25.3 MB
ENCFF913UAJ.bigWig bigWig (minus strand signal of unique reads) 67.4 MB
ENCFF916DRP.bigWig bigWig (plus strand signal of all reads) 73.6 MB
ENCFF917QUS.bam bam (alignments) 3.5 GB
ENCFF920LKB.bam bam (alignments) 3.4 GB
ENCFF929ZYI.bigWig bigWig (plus strand signal of all reads) 69.9 MB
ENCFF937YQV.bigWig bigWig (minus strand signal of unique reads) 66.9 MB
ENCFF940QSZ.bigWig bigWig (minus strand signal of unique reads) 63.3 MB
ENCFF940TLL.bigWig bigWig (plus strand signal of all reads) 78.5 MB
ENCFF970ZIC.bigWig bigWig (plus strand signal of unique reads) 67.6 MB
ENCFF975JNF.tsv tsv (transcript quantifications) 25.3 MB
ENCFF985HQJ.bigWig bigWig (plus strand signal of all reads) 80.8 MB
ENCFF987PKL.fastq fastq (reads) 1.7 GB
ENCSR030ARO ENCSR · via encode_api

shRNA knockdown against NCBP2 in HepG2 cells followed by RNA-seq. (NCBP2-BGHLV12)

Homo sapiens

92 data files
FileTypeSize
ENCFF018FHM.bigWig bigWig (plus strand signal of unique reads) 98.2 MB
ENCFF027PLU.tsv tsv (transcript quantifications) 27.4 MB
ENCFF031LDI.bigWig bigWig (plus strand signal of all reads) 107.6 MB
ENCFF032ZUV.bigWig bigWig (plus strand signal of all reads) 94.5 MB
ENCFF034TWH.bigWig bigWig (plus strand signal of unique reads) 99.0 MB
ENCFF038VGQ.bigWig bigWig (plus strand signal of all reads) 100.7 MB
ENCFF044UJS.bam bam (transcriptome alignments) 7.2 GB
ENCFF059TBL.bigWig bigWig (minus strand signal of unique reads) 96.2 MB
ENCFF078PES.tsv tsv (transcript quantifications) 24.9 MB
ENCFF083LTV.bam bam (alignments) 5.3 GB
ENCFF107TUL.bam bam (transcriptome alignments) 7.3 GB
ENCFF109AZY.bigWig bigWig (plus strand signal of all reads) 96.0 MB
ENCFF114XZQ.tsv tsv (gene quantifications) 9.4 MB
ENCFF115YNZ.bigWig bigWig (minus strand signal of all reads) 95.8 MB
ENCFF142XDM.bigWig bigWig (plus strand signal of unique reads) 94.3 MB
ENCFF144STI.bigWig bigWig (minus strand signal of unique reads) 95.4 MB
ENCFF164RKF.tsv tsv (transcript quantifications) 25.3 MB
ENCFF168PLU.bigWig bigWig (minus strand signal of unique reads) 91.5 MB
ENCFF201WXV.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF207PUP.tsv tsv (transcript quantifications) 24.9 MB
ENCFF223RGY.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF225NMX.bigWig bigWig (minus strand signal of all reads) 105.7 MB
ENCFF227CGK.bigWig bigWig (plus strand signal of all reads) 108.1 MB
ENCFF231NQE.bam bam (alignments) 5.9 GB
ENCFF259UPG.fastq fastq (reads) 3.3 GB
ENCFF260YUU.tsv tsv (differential expression quantifications) 3.0 MB
ENCFF264BXG.fastq fastq (reads) 3.2 GB
ENCFF266PNU.bam bam (alignments) 4.9 GB
ENCFF275KIV.bigWig bigWig (minus strand signal of all reads) 105.9 MB
ENCFF285CEI.bigWig bigWig (plus strand signal of all reads) 108.4 MB
ENCFF294SUP.bigWig bigWig (minus strand signal of unique reads) 95.0 MB
ENCFF295OLP.bigWig bigWig (minus strand signal of unique reads) 90.1 MB
ENCFF303GKS.bigWig bigWig (minus strand signal of unique reads) 90.8 MB
ENCFF307HGK.bigWig bigWig (minus strand signal of unique reads) 91.7 MB
ENCFF333MDR.tsv tsv (transcript quantifications) 29.8 MB
ENCFF352LSY.bam bam (alignments) 4.9 GB
ENCFF363YUX.bigWig bigWig (plus strand signal of unique reads) 92.8 MB
ENCFF369TVD.bigWig bigWig (plus strand signal of all reads) 108.4 MB
ENCFF374IXM.bigWig bigWig (plus strand signal of all reads) 97.9 MB
ENCFF387EGG.fastq fastq (reads) 2.9 GB
ENCFF398WMM.bigWig bigWig (minus strand signal of unique reads) 86.3 MB
ENCFF399EUL.tsv tsv (differential expression quantifications) 4.4 MB
ENCFF437AEF.tar tar (differential splicing quantifications) 4.5 MB
ENCFF443ZSO.bigWig bigWig (minus strand signal of all reads) 105.3 MB
ENCFF466QRO.bam bam (transcriptome alignments) 8.2 GB
ENCFF467FZK.bigWig bigWig (plus strand signal of unique reads) 98.2 MB
ENCFF481OQX.tar tar (differential splicing quantifications) 17.0 MB
ENCFF489GAR.tsv tsv (gene quantifications) 10.4 MB
ENCFF513WMK.bigWig bigWig (minus strand signal of unique reads) 96.2 MB
ENCFF523KPG.bigWig bigWig (plus strand signal of all reads) 107.4 MB
ENCFF524BVV.bigWig bigWig (minus strand signal of all reads) 106.1 MB
ENCFF529OQY.bigWig bigWig (plus strand signal of unique reads) 94.6 MB
ENCFF585EBX.bam bam (alignments) 4.5 GB
ENCFF587KKY.bam bam (alignments) 5.9 GB
ENCFF589GPE.tsv tsv (differential expression quantifications) 1.8 MB
ENCFF590VAH.tsv tsv (transcript quantifications) 25.3 MB
ENCFF594LYM.bam bam (alignments) 5.7 GB
ENCFF600IMN.bam bam (transcriptome alignments) 6.6 GB
ENCFF608NYZ.bigWig bigWig (plus strand signal of unique reads) 88.8 MB
ENCFF619MPC.bam bam (alignments) 5.5 GB
ENCFF627DXP.bigWig bigWig (plus strand signal of all reads) 98.5 MB
ENCFF628VJB.bigWig bigWig (plus strand signal of unique reads) 99.0 MB
ENCFF664TKJ.bam bam (alignments) 4.9 GB
ENCFF681TKV.bigWig bigWig (plus strand signal of unique reads) 99.3 MB
ENCFF686SLR.bam bam (alignments) 5.5 GB
ENCFF691OUZ.bam bam (transcriptome alignments) 7.4 GB
ENCFF692OEE.bigWig bigWig (plus strand signal of unique reads) 97.8 MB
ENCFF696BOL.tsv tsv (gene quantifications) 10.4 MB
ENCFF696EML.bigWig bigWig (minus strand signal of all reads) 98.2 MB
ENCFF713NPI.tsv tsv (gene quantifications) 9.1 MB
ENCFF755YTC.tsv tsv (transcript quantifications) 27.4 MB
ENCFF762HBC.bigWig bigWig (plus strand signal of all reads) 107.5 MB
ENCFF762QXS.tar tar (differential splicing quantifications) 3.6 MB
ENCFF789XJH.bigWig bigWig (minus strand signal of all reads) 96.5 MB
ENCFF814PHB.bigWig bigWig (minus strand signal of all reads) 105.3 MB
ENCFF827NAX.bigWig bigWig (minus strand signal of all reads) 106.1 MB
ENCFF844LQT.bigWig bigWig (minus strand signal of unique reads) 95.3 MB
ENCFF852RTM.bigWig bigWig (minus strand signal of unique reads) 96.3 MB
ENCFF858GSV.bigWig bigWig (minus strand signal of all reads) 98.0 MB
ENCFF863EAW.fastq fastq (reads) 3.0 GB
ENCFF863MXG.tsv tsv (transcript quantifications) 29.8 MB
ENCFF865GQN.bigWig bigWig (plus strand signal of unique reads) 93.3 MB
ENCFF868MDR.bigWig bigWig (plus strand signal of all reads) 100.2 MB
ENCFF878JEJ.bigWig bigWig (minus strand signal of all reads) 92.4 MB
ENCFF880TCV.bigWig bigWig (plus strand signal of unique reads) 89.6 MB
ENCFF889XGM.tsv tsv (gene quantifications) 9.4 MB
ENCFF924EQI.bigWig bigWig (minus strand signal of unique reads) 86.9 MB
ENCFF948JNI.bam bam (transcriptome alignments) 6.6 GB
ENCFF952TZS.bigWig bigWig (minus strand signal of all reads) 93.8 MB
ENCFF974BIC.bam bam (alignments) 4.5 GB
ENCFF974QEM.tsv tsv (gene quantifications) 9.1 MB
ENCFF987OMD.bam bam (alignments) 4.6 GB
ENCSR232CPD ENCSR · via encode_api

shRNA knockdown against XRCC6 in K562 cells followed by RNA-seq. (XRCC6 BGKLV13)

Homo sapiens

92 data files
FileTypeSize
ENCFF010IOC.bigWig bigWig (minus strand signal of unique reads) 60.8 MB
ENCFF017OWT.bigWig bigWig (plus strand signal of all reads) 76.6 MB
ENCFF024JBZ.bigWig bigWig (minus strand signal of unique reads) 74.3 MB
ENCFF047XWR.bigWig bigWig (minus strand signal of all reads) 84.6 MB
ENCFF048CAU.tar tar (differential splicing quantifications) 4.0 MB
ENCFF070IMF.tsv tsv (transcript quantifications) 25.3 MB
ENCFF083UZN.bigWig bigWig (plus strand signal of unique reads) 75.9 MB
ENCFF085MSX.tsv tsv (transcript quantifications) 29.8 MB
ENCFF085RPO.fastq fastq (reads) 2.1 GB
ENCFF087OMA.tsv tsv (gene quantifications) 9.4 MB
ENCFF114URB.bigWig bigWig (plus strand signal of unique reads) 69.4 MB
ENCFF126YQD.bigWig bigWig (plus strand signal of all reads) 78.3 MB
ENCFF128XGD.tsv tsv (gene quantifications) 10.4 MB
ENCFF134CFF.bigWig bigWig (plus strand signal of unique reads) 69.9 MB
ENCFF144YCH.tsv tsv (differential expression quantifications) 3.0 MB
ENCFF146KUN.tsv tsv (transcript quantifications) 27.3 MB
ENCFF148UQQ.bigWig bigWig (minus strand signal of unique reads) 67.7 MB
ENCFF148YOV.bigWig bigWig (minus strand signal of all reads) 70.8 MB
ENCFF151VAI.bam bam (alignments) 3.5 GB
ENCFF156IWL.bigWig bigWig (plus strand signal of unique reads) 62.2 MB
ENCFF159RXO.bigWig bigWig (minus strand signal of all reads) 72.3 MB
ENCFF161HJS.bigWig bigWig (minus strand signal of unique reads) 70.8 MB
ENCFF166PPF.bigWig bigWig (plus strand signal of unique reads) 66.1 MB
ENCFF171PJO.bigWig bigWig (minus strand signal of unique reads) 68.3 MB
ENCFF172PAQ.bam bam (transcriptome alignments) 4.6 GB
ENCFF175FUM.bam bam (alignments) 4.3 GB
ENCFF180LMY.bam bam (alignments) 3.8 GB
ENCFF181YZN.bigWig bigWig (minus strand signal of all reads) 77.3 MB
ENCFF182BIG.bigWig bigWig (plus strand signal of unique reads) 76.5 MB
ENCFF191PHB.tsv tsv (gene quantifications) 10.4 MB
ENCFF192QED.tsv tsv (transcript quantifications) 24.9 MB
ENCFF197TYB.bam bam (transcriptome alignments) 5.8 GB
ENCFF201UID.bigWig bigWig (plus strand signal of all reads) 76.9 MB
ENCFF218CMS.bam bam (transcriptome alignments) 5.2 GB
ENCFF232WOH.tsv tsv (differential expression quantifications) 5.5 MB
ENCFF244JKT.bigWig bigWig (minus strand signal of unique reads) 64.6 MB
ENCFF271LXY.tar tar (differential splicing quantifications) 15.0 MB
ENCFF275JXD.bigWig bigWig (minus strand signal of unique reads) 68.4 MB
ENCFF312GTK.bigWig bigWig (minus strand signal of all reads) 76.2 MB
ENCFF332RPY.bigWig bigWig (minus strand signal of all reads) 69.5 MB
ENCFF335LAC.bigWig bigWig (minus strand signal of all reads) 66.4 MB
ENCFF347FHQ.bigWig bigWig (plus strand signal of unique reads) 70.0 MB
ENCFF358RVR.bigWig bigWig (minus strand signal of all reads) 83.6 MB
ENCFF364QMR.bigWig bigWig (minus strand signal of unique reads) 64.6 MB
ENCFF373KNJ.bigWig bigWig (plus strand signal of all reads) 78.3 MB
ENCFF379CXM.bam bam (alignments) 3.3 GB
ENCFF411RHC.bigWig bigWig (plus strand signal of unique reads) 72.5 MB
ENCFF419MSY.bigWig bigWig (plus strand signal of unique reads) 72.3 MB
ENCFF422ZTV.tsv tsv (transcript quantifications) 29.8 MB
ENCFF431SBF.bigWig bigWig (minus strand signal of unique reads) 70.8 MB
ENCFF450GFE.tsv tsv (transcript quantifications) 24.9 MB
ENCFF457NBN.fastq fastq (reads) 2.1 GB
ENCFF458JKS.bigWig bigWig (minus strand signal of all reads) 77.4 MB
ENCFF462VVV.bam bam (alignments) 3.8 GB
ENCFF470UEF.bigWig bigWig (plus strand signal of all reads) 85.5 MB
ENCFF503VIE.bam bam (transcriptome alignments) 5.2 GB
ENCFF518DTO.bigWig bigWig (minus strand signal of all reads) 76.1 MB
ENCFF526KSF.bigWig bigWig (minus strand signal of unique reads) 75.0 MB
ENCFF539WBG.bigWig bigWig (plus strand signal of unique reads) 76.6 MB
ENCFF545XUN.tsv tsv (gene quantifications) 9.4 MB
ENCFF552FWX.bigWig bigWig (plus strand signal of unique reads) 65.9 MB
ENCFF599IGC.bigWig bigWig (plus strand signal of all reads) 84.5 MB
ENCFF605GQB.bam bam (alignments) 4.2 GB
ENCFF614ABO.bam bam (alignments) 3.7 GB
ENCFF622FID.bam bam (alignments) 4.5 GB
ENCFF631VNP.bam bam (alignments) 3.7 GB
ENCFF641KMU.bigWig bigWig (plus strand signal of all reads) 73.5 MB
ENCFF641UXR.bam bam (alignments) 3.3 GB
ENCFF664MUY.fastq fastq (reads) 2.4 GB
ENCFF691IWS.fastq fastq (reads) 2.3 GB
ENCFF696EKD.bigWig bigWig (minus strand signal of unique reads) 74.8 MB
ENCFF715BAK.bigWig bigWig (plus strand signal of all reads) 67.4 MB
ENCFF724UAH.tsv tsv (gene quantifications) 9.1 MB
ENCFF740OOP.tar tar (differential splicing quantifications) 4.6 MB
ENCFF747JXC.bigWig bigWig (plus strand signal of all reads) 71.9 MB
ENCFF748DWE.bigWig bigWig (plus strand signal of all reads) 77.4 MB
ENCFF748YND.bam bam (transcriptome alignments) 4.6 GB
ENCFF765ERQ.bam bam (alignments) 4.5 GB
ENCFF825PIQ.tsv tsv (transcript quantifications) 25.3 MB
ENCFF833HRH.bigWig bigWig (plus strand signal of unique reads) 68.0 MB
ENCFF856EDS.tsv tsv (gene quantifications) 9.1 MB
ENCFF862ZYS.bam bam (transcriptome alignments) 5.1 GB
ENCFF885QTO.tsv tsv (transcript quantifications) 27.3 MB
ENCFF892VXJ.bam bam (alignments) 4.2 GB
ENCFF922JWH.bigWig bigWig (plus strand signal of all reads) 70.3 MB
ENCFF924HSO.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF955ZKC.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF958ATA.bigWig bigWig (plus strand signal of all reads) 85.5 MB
ENCFF966WZJ.bigWig bigWig (minus strand signal of all reads) 84.6 MB
ENCFF969FMS.tsv tsv (differential expression quantifications) 4.2 MB
ENCFF974TFL.bigWig bigWig (minus strand signal of all reads) 75.7 MB
ENCFF986DWQ.bigWig bigWig (minus strand signal of unique reads) 66.3 MB
ENCSR482ZSE ENCSR · via encode_api

eCLIP control experiment on K562 against U2AF1

Homo sapiens

8 data files
FileTypeSize
ENCFF097FJQ.bam bam (alignments) 169.6 MB
ENCFF190YCK.bigWig bigWig (minus strand signal of unique reads) 9.9 MB
ENCFF390CHP.bigWig bigWig (plus strand signal of unique reads) 10.4 MB
ENCFF560FPW.bigWig bigWig (plus strand signal of unique reads) 10.5 MB
ENCFF690PIW.fastq fastq (reads) 448.7 MB
ENCFF704DIO.fastq fastq (reads) 459.2 MB
ENCFF902JCQ.bigWig bigWig (minus strand signal of unique reads) 10.0 MB
ENCFF948OYU.bam bam (alignments) 169.8 MB
ENCSR354KAS ENCSR · via encode_api

eCLIP control experiment on HepG2 against HNRNPK

Homo sapiens

8 data files
FileTypeSize
ENCFF019JFZ.bam bam (alignments) 264.0 MB
ENCFF060FDD.fastq fastq (reads) 301.0 MB
ENCFF157EHU.bigWig bigWig (plus strand signal of unique reads) 13.1 MB
ENCFF377LKH.bigWig bigWig (plus strand signal of unique reads) 13.2 MB
ENCFF538YHY.bam bam (alignments) 262.3 MB
ENCFF555OUH.fastq fastq (reads) 291.6 MB
ENCFF748LOT.bigWig bigWig (minus strand signal of unique reads) 12.9 MB
ENCFF993RTG.bigWig bigWig (minus strand signal of unique reads) 12.8 MB
ENCSR096SZE ENCSR · via encode_api

eCLIP control experiment on K562 against PRPF8

Homo sapiens

8 data files
FileTypeSize
ENCFF126WXL.bigWig bigWig (plus strand signal of unique reads) 29.1 MB
ENCFF365IYY.bam bam (alignments) 567.1 MB
ENCFF486ZOM.fastq fastq (reads) 649.7 MB
ENCFF527NLI.bigWig bigWig (plus strand signal of unique reads) 28.9 MB
ENCFF838JNU.bigWig bigWig (minus strand signal of unique reads) 28.0 MB
ENCFF928QRQ.bigWig bigWig (minus strand signal of unique reads) 27.9 MB
ENCFF939HBM.fastq fastq (reads) 627.3 MB
ENCFF947MAG.bam bam (alignments) 569.5 MB
ENCSR944GMN ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) input control experiment of HNRNPK

1 data file
FileTypeSize
ENCFF537ORU.fastq fastq (reads) 274.9 MB
ENCSR220TBR ENCSR · via encode_api

RNA-seq on HepG2 cells treated with an shRNA knockdown against DAZAP1. (DAZAP1-BGHLV23)

Homo sapiens

92 data files
FileTypeSize
ENCFF008YVR.bam bam (alignments) 4.2 GB
ENCFF009GUH.bigWig bigWig (minus strand signal of all reads) 80.7 MB
ENCFF010GKN.bigWig bigWig (plus strand signal of all reads) 74.8 MB
ENCFF051MKS.bigWig bigWig (minus strand signal of unique reads) 75.1 MB
ENCFF058NSU.tsv tsv (gene quantifications) 9.5 MB
ENCFF066IXF.bam bam (alignments) 5.1 GB
ENCFF071FYQ.fastq fastq (reads) 2.7 GB
ENCFF087WID.bam bam (transcriptome alignments) 6.3 GB
ENCFF087WVY.bigWig bigWig (minus strand signal of all reads) 80.7 MB
ENCFF095WJB.tsv tsv (gene quantifications) 9.1 MB
ENCFF110OVR.bigWig bigWig (minus strand signal of unique reads) 68.4 MB
ENCFF111NRZ.bam bam (alignments) 5.1 GB
ENCFF113STL.tsv tsv (transcript quantifications) 25.3 MB
ENCFF115QEM.tsv tsv (transcript quantifications) 27.3 MB
ENCFF139MGI.tsv tsv (differential expression quantifications) 2.0 MB
ENCFF143SXM.bigWig bigWig (minus strand signal of unique reads) 80.4 MB
ENCFF161DKU.bigWig bigWig (minus strand signal of unique reads) 72.7 MB
ENCFF164KYD.bigWig bigWig (plus strand signal of unique reads) 81.5 MB
ENCFF167LLC.tsv tsv (transcript quantifications) 24.9 MB
ENCFF178XWX.bigWig bigWig (plus strand signal of unique reads) 76.8 MB
ENCFF208PUO.bam bam (alignments) 4.2 GB
ENCFF216JSW.bigWig bigWig (plus strand signal of all reads) 74.3 MB
ENCFF223WCT.bigWig bigWig (plus strand signal of all reads) 81.1 MB
ENCFF234IBU.bigWig bigWig (plus strand signal of all reads) 82.8 MB
ENCFF286FOS.tsv tsv (differential expression quantifications) 4.4 MB
ENCFF313BXR.fastq fastq (reads) 2.7 GB
ENCFF322WTG.bigWig bigWig (plus strand signal of unique reads) 74.4 MB
ENCFF326DCV.bigWig bigWig (minus strand signal of unique reads) 74.9 MB
ENCFF369EQS.bigWig bigWig (plus strand signal of unique reads) 69.5 MB
ENCFF375HZC.bigWig bigWig (plus strand signal of unique reads) 78.3 MB
ENCFF427XIT.bam bam (alignments) 5.7 GB
ENCFF452GYU.bigWig bigWig (plus strand signal of unique reads) 82.3 MB
ENCFF461PND.tar tar (differential splicing quantifications) 4.5 MB
ENCFF474ETK.bigWig bigWig (minus strand signal of unique reads) 76.5 MB
ENCFF486SZB.bam bam (transcriptome alignments) 6.3 GB
ENCFF490MWF.bigWig bigWig (minus strand signal of unique reads) 67.1 MB
ENCFF498HTR.bigWig bigWig (plus strand signal of unique reads) 68.9 MB
ENCFF508BCX.bigWig bigWig (plus strand signal of unique reads) 74.4 MB
ENCFF519ZZI.bigWig bigWig (plus strand signal of all reads) 89.5 MB
ENCFF528PLX.tsv tsv (gene quantifications) 10.4 MB
ENCFF535DJP.bam bam (alignments) 4.9 GB
ENCFF536EUE.bigWig bigWig (minus strand signal of all reads) 73.6 MB
ENCFF542QZZ.bigWig bigWig (minus strand signal of unique reads) 72.7 MB
ENCFF547QNX.tsv tsv (transcript quantifications) 29.8 MB
ENCFF551JEH.tar tar (differential splicing quantifications) 17.8 MB
ENCFF562RFN.bigWig bigWig (plus strand signal of all reads) 90.1 MB
ENCFF573FPF.bigWig bigWig (plus strand signal of all reads) 81.9 MB
ENCFF573LTS.bam bam (alignments) 4.3 GB
ENCFF576PLS.bigWig bigWig (plus strand signal of unique reads) 76.8 MB
ENCFF583EVT.bam bam (alignments) 5.1 GB
ENCFF585DGN.bam bam (transcriptome alignments) 8.2 GB
ENCFF596KNC.bam bam (alignments) 6.0 GB
ENCFF603OWY.tsv tsv (transcript quantifications) 24.9 MB
ENCFF612PRV.bigWig bigWig (plus strand signal of all reads) 81.9 MB
ENCFF613KEV.tsv tsv (transcript quantifications) 27.4 MB
ENCFF613MFR.bigWig bigWig (plus strand signal of all reads) 73.6 MB
ENCFF613NFR.bigWig bigWig (plus strand signal of unique reads) 82.3 MB
ENCFF614ECZ.bigWig bigWig (plus strand signal of unique reads) 70.0 MB
ENCFF614VVZ.bam bam (transcriptome alignments) 7.3 GB
ENCFF632BSU.tsv tsv (gene quantifications) 9.5 MB
ENCFF639IPH.bigWig bigWig (plus strand signal of all reads) 81.7 MB
ENCFF644GUD.bigWig bigWig (minus strand signal of unique reads) 68.0 MB
ENCFF651KFE.bigWig bigWig (minus strand signal of unique reads) 79.6 MB
ENCFF663TNQ.tsv tsv (gene quantifications) 9.1 MB
ENCFF667TOF.bigWig bigWig (plus strand signal of all reads) 90.1 MB
ENCFF693KCR.tsv tsv (transcript quantifications) 25.3 MB
ENCFF705KHL.bigWig bigWig (minus strand signal of all reads) 73.1 MB
ENCFF709OSO.fastq fastq (reads) 3.2 GB
ENCFF716FDR.bigWig bigWig (minus strand signal of all reads) 81.4 MB
ENCFF716VBR.bigWig bigWig (plus strand signal of unique reads) 74.4 MB
ENCFF720SXB.tsv tsv (gene quantifications) 10.4 MB
ENCFF735XNZ.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF741PAK.tsv tsv (differential expression quantifications) 1.8 MB
ENCFF805YOT.bigWig bigWig (minus strand signal of all reads) 88.8 MB
ENCFF808EHG.bam bam (alignments) 4.9 GB
ENCFF809TQF.bigWig bigWig (minus strand signal of all reads) 72.2 MB
ENCFF822GKO.bigWig bigWig (plus strand signal of all reads) 81.9 MB
ENCFF833SFV.bigWig bigWig (minus strand signal of all reads) 80.0 MB
ENCFF840ENQ.bigWig bigWig (minus strand signal of unique reads) 80.4 MB
ENCFF844QVL.bigWig bigWig (minus strand signal of all reads) 88.3 MB
ENCFF864WXU.bam bam (alignments) 6.0 GB
ENCFF871VDK.tar tar (differential splicing quantifications) 3.5 MB
ENCFF897KGU.bigWig bigWig (minus strand signal of all reads) 80.2 MB
ENCFF902KKY.bigWig bigWig (minus strand signal of all reads) 80.4 MB
ENCFF905HGM.bam bam (transcriptome alignments) 7.0 GB
ENCFF907GJV.tsv tsv (transcript quantifications) 29.8 MB
ENCFF933NWR.bigWig bigWig (minus strand signal of unique reads) 72.7 MB
ENCFF937IXX.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF978JEJ.bigWig bigWig (minus strand signal of all reads) 88.7 MB
ENCFF984IGG.fastq fastq (reads) 3.1 GB
ENCFF996OUX.bam bam (alignments) 4.9 GB
ENCFF999ICB.bam bam (transcriptome alignments) 7.3 GB
ENCSR781YNI ENCSR · via encode_api

RNA-seq on HepG2 cells treated with an shRNA knockdown against SRSF5. (SRSF5-BGHLV23)

Homo sapiens

92 data files
FileTypeSize
ENCFF003NIO.fastq fastq (reads) 2.5 GB
ENCFF011EWS.tar tar (differential splicing quantifications) 4.8 MB
ENCFF012HOW.bigWig bigWig (plus strand signal of all reads) 90.3 MB
ENCFF021HLV.tsv tsv (transcript quantifications) 25.3 MB
ENCFF027ALP.tsv tsv (transcript quantifications) 29.8 MB
ENCFF027OAV.bigWig bigWig (plus strand signal of all reads) 80.2 MB
ENCFF076ILW.bigWig bigWig (minus strand signal of unique reads) 75.0 MB
ENCFF076YMP.bigWig bigWig (minus strand signal of unique reads) 73.9 MB
ENCFF085SVR.bigWig bigWig (plus strand signal of unique reads) 72.1 MB
ENCFF086EYY.bam bam (transcriptome alignments) 6.2 GB
ENCFF107DWU.tsv tsv (transcript quantifications) 24.9 MB
ENCFF111OIE.bigWig bigWig (plus strand signal of unique reads) 69.2 MB
ENCFF154XVC.bam bam (alignments) 4.9 GB
ENCFF170AIY.bam bam (transcriptome alignments) 6.2 GB
ENCFF184QWR.bigWig bigWig (minus strand signal of unique reads) 73.7 MB
ENCFF197NTF.tsv tsv (transcript quantifications) 27.4 MB
ENCFF211SWP.bigWig bigWig (minus strand signal of unique reads) 70.0 MB
ENCFF222IRU.bigWig bigWig (minus strand signal of all reads) 74.7 MB
ENCFF238WAE.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF248GXR.bam bam (alignments) 5.1 GB
ENCFF266LRB.fastq fastq (reads) 2.4 GB
ENCFF270QYP.bigWig bigWig (minus strand signal of all reads) 83.0 MB
ENCFF289IWR.bigWig bigWig (plus strand signal of unique reads) 76.0 MB
ENCFF303SHH.bigWig bigWig (plus strand signal of all reads) 77.7 MB
ENCFF303XVU.tsv tsv (transcript quantifications) 25.3 MB
ENCFF321ZAL.bam bam (transcriptome alignments) 6.9 GB
ENCFF332BYD.bigWig bigWig (minus strand signal of all reads) 78.6 MB
ENCFF332XZD.bam bam (alignments) 4.5 GB
ENCFF339PSS.bigWig bigWig (plus strand signal of unique reads) 81.6 MB
ENCFF339RGD.tsv tsv (gene quantifications) 9.1 MB
ENCFF341XGN.bam bam (alignments) 3.9 GB
ENCFF343XZY.tsv tsv (gene quantifications) 9.1 MB
ENCFF373ORR.bigWig bigWig (minus strand signal of all reads) 88.5 MB
ENCFF378TYY.bigWig bigWig (minus strand signal of unique reads) 74.3 MB
ENCFF392YXO.bigWig bigWig (plus strand signal of all reads) 76.2 MB
ENCFF397OHO.bigWig bigWig (plus strand signal of all reads) 78.8 MB
ENCFF398GTY.tar tar (differential splicing quantifications) 17.4 MB
ENCFF400QVB.bigWig bigWig (plus strand signal of unique reads) 81.5 MB
ENCFF407UGS.bigWig bigWig (plus strand signal of all reads) 88.9 MB
ENCFF410EBZ.bigWig bigWig (plus strand signal of all reads) 90.3 MB
ENCFF413QEW.bigWig bigWig (plus strand signal of unique reads) 71.8 MB
ENCFF416UVI.bigWig bigWig (plus strand signal of all reads) 83.2 MB
ENCFF419ESV.bigWig bigWig (minus strand signal of all reads) 75.9 MB
ENCFF458FYO.bigWig bigWig (minus strand signal of all reads) 87.3 MB
ENCFF460JVD.tsv tsv (transcript quantifications) 27.4 MB
ENCFF471FMB.tsv tsv (gene quantifications) 9.5 MB
ENCFF477TTV.bam bam (alignments) 4.6 GB
ENCFF497FZS.bigWig bigWig (plus strand signal of all reads) 82.7 MB
ENCFF509TVZ.bigWig bigWig (minus strand signal of all reads) 83.0 MB
ENCFF539NDT.bigWig bigWig (minus strand signal of all reads) 80.9 MB
ENCFF540VVI.bigWig bigWig (plus strand signal of all reads) 74.4 MB
ENCFF546NGR.bigWig bigWig (plus strand signal of unique reads) 76.0 MB
ENCFF554IYD.bigWig bigWig (plus strand signal of unique reads) 73.6 MB
ENCFF558TQK.bam bam (transcriptome alignments) 5.6 GB
ENCFF596SEK.tsv tsv (gene quantifications) 10.4 MB
ENCFF613WEL.bigWig bigWig (minus strand signal of all reads) 77.1 MB
ENCFF645CID.bigWig bigWig (plus strand signal of unique reads) 76.0 MB
ENCFF685DEY.bigWig bigWig (minus strand signal of unique reads) 79.2 MB
ENCFF708QSG.bam bam (alignments) 4.6 GB
ENCFF709TXV.bam bam (alignments) 4.3 GB
ENCFF722EUI.tsv tsv (differential expression quantifications) 4.4 MB
ENCFF727MHP.bigWig bigWig (minus strand signal of unique reads) 71.3 MB
ENCFF741EFS.tsv tsv (transcript quantifications) 24.9 MB
ENCFF744IPR.bam bam (alignments) 4.4 GB
ENCFF750VRT.tsv tsv (differential expression quantifications) 3.0 MB
ENCFF755GJK.fastq fastq (reads) 2.8 GB
ENCFF756YMT.tsv tsv (transcript quantifications) 29.8 MB
ENCFF760FPK.bigWig bigWig (plus strand signal of unique reads) 76.6 MB
ENCFF766RBT.tsv tsv (gene quantifications) 10.4 MB
ENCFF770CUN.bigWig bigWig (minus strand signal of unique reads) 79.1 MB
ENCFF790MNL.bigWig bigWig (plus strand signal of unique reads) 77.4 MB
ENCFF796KNG.bigWig bigWig (minus strand signal of unique reads) 73.8 MB
ENCFF799TWX.bigWig bigWig (minus strand signal of all reads) 72.6 MB
ENCFF834HCN.bigWig bigWig (minus strand signal of unique reads) 67.1 MB
ENCFF837FYS.tar tar (differential splicing quantifications) 3.6 MB
ENCFF881HPU.bigWig bigWig (minus strand signal of all reads) 81.7 MB
ENCFF883PJY.bam bam (alignments) 5.1 GB
ENCFF903ZHR.bigWig bigWig (minus strand signal of unique reads) 69.7 MB
ENCFF905DQR.bam bam (alignments) 3.9 GB
ENCFF925SCR.bam bam (alignments) 3.9 GB
ENCFF926TGZ.bam bam (transcriptome alignments) 5.6 GB
ENCFF935KEM.bigWig bigWig (minus strand signal of all reads) 88.5 MB
ENCFF945NAE.bigWig bigWig (plus strand signal of unique reads) 81.7 MB
ENCFF946EQQ.bam bam (alignments) 4.3 GB
ENCFF959WPC.fastq fastq (reads) 2.7 GB
ENCFF960CGT.tsv tsv (gene quantifications) 9.4 MB
ENCFF961DHF.bigWig bigWig (plus strand signal of all reads) 84.8 MB
ENCFF973HFV.bigWig bigWig (minus strand signal of unique reads) 79.2 MB
ENCFF976SLL.bam bam (transcriptome alignments) 6.2 GB
ENCFF988JCN.bigWig bigWig (plus strand signal of all reads) 84.8 MB
ENCFF988THJ.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF997CUK.tsv tsv (differential expression quantifications) 1.8 MB
ENCSR525PNM ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) pulldown experiment against RBM23

11 data files
FileTypeSize
ENCFF085UBL.tsv tsv (library fraction) 17.9 KB
ENCFF214NXF.tsv tsv (enrichment) 60.0 KB
ENCFF237EFE.fastq fastq (reads) 424.7 MB
ENCFF249THA.fastq fastq (reads) 348.3 MB
ENCFF333ITA.tsv tsv (library fraction) 75.4 KB
ENCFF462XAL.fastq fastq (reads) 304.2 MB
ENCFF529RME.tsv tsv (enrichment) 14.8 KB
ENCFF601SFI.fastq fastq (reads) 616.5 MB
ENCFF776JOW.fastq fastq (reads) 506.0 MB
ENCFF790RKD.tsv tsv (library fraction) 312.8 KB
ENCFF810PLU.tsv tsv (enrichment) 244.0 KB
ENCSR720BPO ENCSR · via encode_api

RNA-seq on HepG2 cells treated with an shRNA knockdown against HNRNPA0. (HNRNPA0-BGHLV22)

Homo sapiens

92 data files
FileTypeSize
ENCFF014AQP.bigWig bigWig (plus strand signal of all reads) 72.5 MB
ENCFF033KCD.bam bam (alignments) 4.1 GB
ENCFF040NYO.bigWig bigWig (plus strand signal of unique reads) 64.4 MB
ENCFF043WGI.bam bam (transcriptome alignments) 5.1 GB
ENCFF094WYT.bigWig bigWig (plus strand signal of unique reads) 60.8 MB
ENCFF104YAP.bam bam (transcriptome alignments) 5.0 GB
ENCFF112DUB.bam bam (alignments) 3.4 GB
ENCFF115WOV.tsv tsv (transcript quantifications) 24.9 MB
ENCFF123YYG.tsv tsv (gene quantifications) 9.1 MB
ENCFF130ZSK.fastq fastq (reads) 2.1 GB
ENCFF150UCH.bigWig bigWig (minus strand signal of unique reads) 63.8 MB
ENCFF170LCW.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF171VZO.bigWig bigWig (plus strand signal of all reads) 74.5 MB
ENCFF172VDZ.bam bam (alignments) 4.1 GB
ENCFF188WQU.bam bam (transcriptome alignments) 5.0 GB
ENCFF209ZNM.tsv tsv (gene quantifications) 10.4 MB
ENCFF238CZA.tsv tsv (gene quantifications) 10.4 MB
ENCFF250VAB.bam bam (transcriptome alignments) 5.7 GB
ENCFF280HMX.bigWig bigWig (plus strand signal of unique reads) 62.5 MB
ENCFF283QRM.bigWig bigWig (plus strand signal of all reads) 71.8 MB
ENCFF286IRR.bigWig bigWig (minus strand signal of unique reads) 64.5 MB
ENCFF295KEF.tsv tsv (differential expression quantifications) 5.7 MB
ENCFF302JWN.bigWig bigWig (minus strand signal of unique reads) 66.8 MB
ENCFF319OFE.bigWig bigWig (minus strand signal of unique reads) 61.8 MB
ENCFF331FPR.bigWig bigWig (minus strand signal of all reads) 71.1 MB
ENCFF336UDD.bigWig bigWig (minus strand signal of all reads) 64.0 MB
ENCFF346KQX.tsv tsv (gene quantifications) 9.4 MB
ENCFF352GXN.bam bam (alignments) 3.4 GB
ENCFF357BSJ.tsv tsv (transcript quantifications) 29.8 MB
ENCFF360IZS.bigWig bigWig (minus strand signal of all reads) 71.7 MB
ENCFF367RDX.bigWig bigWig (minus strand signal of unique reads) 66.2 MB
ENCFF368RSP.fastq fastq (reads) 2.2 GB
ENCFF369YGD.bigWig bigWig (plus strand signal of all reads) 66.9 MB
ENCFF370BJH.bigWig bigWig (plus strand signal of unique reads) 65.3 MB
ENCFF392EQV.fastq fastq (reads) 2.0 GB
ENCFF423AHV.bam bam (alignments) 3.9 GB
ENCFF451SRO.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF462VTF.bigWig bigWig (plus strand signal of all reads) 67.3 MB
ENCFF463HTB.bigWig bigWig (minus strand signal of all reads) 65.9 MB
ENCFF470LMM.bigWig bigWig (minus strand signal of unique reads) 61.4 MB
ENCFF496KIS.tsv tsv (differential expression quantifications) 4.2 MB
ENCFF506WQC.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF518JOO.tsv tsv (transcript quantifications) 24.9 MB
ENCFF521JKY.bam bam (alignments) 3.3 GB
ENCFF521WXD.bigWig bigWig (minus strand signal of all reads) 74.5 MB
ENCFF545VXH.bigWig bigWig (plus strand signal of unique reads) 67.6 MB
ENCFF565BMO.tar tar (differential splicing quantifications) 15.2 MB
ENCFF571ZRA.bigWig bigWig (plus strand signal of unique reads) 63.3 MB
ENCFF607RRO.bigWig bigWig (plus strand signal of unique reads) 67.8 MB
ENCFF617HRK.bam bam (alignments) 3.9 GB
ENCFF619VFJ.bigWig bigWig (plus strand signal of all reads) 65.1 MB
ENCFF621HJR.bigWig bigWig (minus strand signal of all reads) 74.6 MB
ENCFF630AXF.bigWig bigWig (minus strand signal of unique reads) 64.1 MB
ENCFF630RAM.bigWig bigWig (minus strand signal of unique reads) 63.2 MB
ENCFF639SCS.tsv tsv (transcript quantifications) 27.3 MB
ENCFF648NBA.bam bam (alignments) 3.5 GB
ENCFF652OYW.bigWig bigWig (plus strand signal of unique reads) 65.3 MB
ENCFF664JGW.bigWig bigWig (plus strand signal of all reads) 75.5 MB
ENCFF664KGT.bigWig bigWig (minus strand signal of all reads) 66.4 MB
ENCFF672UBI.tsv tsv (gene quantifications) 9.4 MB
ENCFF683MDX.bigWig bigWig (plus strand signal of all reads) 69.9 MB
ENCFF687LTB.tsv tsv (transcript quantifications) 25.3 MB
ENCFF707FIH.bam bam (alignments) 3.3 GB
ENCFF715JTU.tar tar (differential splicing quantifications) 3.6 MB
ENCFF721QNS.bam bam (alignments) 3.8 GB
ENCFF725QDI.bam bam (transcriptome alignments) 5.6 GB
ENCFF728SRC.bigWig bigWig (minus strand signal of unique reads) 63.9 MB
ENCFF731BHE.bigWig bigWig (minus strand signal of unique reads) 66.5 MB
ENCFF731OHU.bigWig bigWig (minus strand signal of all reads) 65.2 MB
ENCFF771TYL.bigWig bigWig (plus strand signal of all reads) 75.5 MB
ENCFF773WEC.bigWig bigWig (plus strand signal of all reads) 68.8 MB
ENCFF803PGZ.bigWig bigWig (plus strand signal of all reads) 66.0 MB
ENCFF830XNP.bigWig bigWig (minus strand signal of all reads) 69.0 MB
ENCFF841HCB.bam bam (alignments) 3.3 GB
ENCFF852VAC.bigWig bigWig (plus strand signal of unique reads) 63.1 MB
ENCFF862YSI.fastq fastq (reads) 2.3 GB
ENCFF867AWF.bigWig bigWig (minus strand signal of all reads) 68.0 MB
ENCFF871QQU.bigWig bigWig (plus strand signal of all reads) 72.4 MB
ENCFF872VJD.tsv tsv (gene quantifications) 9.1 MB
ENCFF901GYI.bam bam (transcriptome alignments) 5.1 GB
ENCFF926XDF.tsv tsv (transcript quantifications) 29.8 MB
ENCFF930QVV.bigWig bigWig (plus strand signal of unique reads) 68.2 MB
ENCFF931KKF.bigWig bigWig (plus strand signal of unique reads) 65.8 MB
ENCFF933NPP.bigWig bigWig (minus strand signal of unique reads) 59.4 MB
ENCFF937OVI.bigWig bigWig (minus strand signal of all reads) 71.6 MB
ENCFF952QCU.tsv tsv (transcript quantifications) 27.2 MB
ENCFF958VMA.bigWig bigWig (minus strand signal of unique reads) 61.9 MB
ENCFF964ZKC.bigWig bigWig (minus strand signal of all reads) 73.8 MB
ENCFF965MEK.bigWig bigWig (plus strand signal of unique reads) 65.0 MB
ENCFF971RLY.bam bam (alignments) 3.9 GB
ENCFF982HFB.tsv tsv (transcript quantifications) 25.3 MB
ENCFF991BDE.tar tar (differential splicing quantifications) 3.0 MB
ENCSR910YNJ ENCSR · via encode_api

RNA-seq on HepG2 cells treated with an shRNA knockdown against PABPC1. (PABPC1-BGHLV22)

Homo sapiens

92 data files
FileTypeSize
ENCFF002GDI.tsv tsv (transcript quantifications) 24.9 MB
ENCFF048HAN.bam bam (alignments) 4.8 GB
ENCFF053CGO.bam bam (transcriptome alignments) 6.6 GB
ENCFF054JNN.bigWig bigWig (plus strand signal of all reads) 82.2 MB
ENCFF062EEN.fastq fastq (reads) 2.9 GB
ENCFF062RDJ.bigWig bigWig (plus strand signal of unique reads) 80.6 MB
ENCFF084VGV.bigWig bigWig (plus strand signal of unique reads) 76.5 MB
ENCFF116VWE.bigWig bigWig (plus strand signal of unique reads) 75.0 MB
ENCFF117RFA.tsv tsv (transcript quantifications) 25.3 MB
ENCFF143QPF.tsv tsv (gene quantifications) 10.4 MB
ENCFF156DBW.tar tar (differential splicing quantifications) 3.4 MB
ENCFF159ZTY.bigWig bigWig (minus strand signal of all reads) 72.8 MB
ENCFF169DSF.bigWig bigWig (plus strand signal of unique reads) 70.2 MB
ENCFF184SKZ.bigWig bigWig (minus strand signal of all reads) 73.5 MB
ENCFF185NLW.bam bam (transcriptome alignments) 5.9 GB
ENCFF194JLP.bam bam (alignments) 4.1 GB
ENCFF200BVN.fastq fastq (reads) 2.9 GB
ENCFF218HAI.bigWig bigWig (minus strand signal of unique reads) 73.4 MB
ENCFF226ISE.bigWig bigWig (minus strand signal of all reads) 74.6 MB
ENCFF236MQP.bigWig bigWig (minus strand signal of unique reads) 69.6 MB
ENCFF250WRC.bigWig bigWig (minus strand signal of unique reads) 78.4 MB
ENCFF272FAT.bigWig bigWig (minus strand signal of unique reads) 72.6 MB
ENCFF296GKT.bigWig bigWig (minus strand signal of unique reads) 72.1 MB
ENCFF313VCF.bam bam (transcriptome alignments) 6.6 GB
ENCFF322XQW.tsv tsv (transcript quantifications) 24.9 MB
ENCFF326LCM.bam bam (transcriptome alignments) 6.5 GB
ENCFF329ZNJ.bigWig bigWig (minus strand signal of all reads) 77.9 MB
ENCFF335AXG.tsv tsv (transcript quantifications) 27.3 MB
ENCFF336GCA.bigWig bigWig (plus strand signal of unique reads) 71.5 MB
ENCFF336NQL.bigWig bigWig (minus strand signal of all reads) 79.1 MB
ENCFF345HLT.tar tar (differential splicing quantifications) 15.2 MB
ENCFF363SMW.bigWig bigWig (minus strand signal of unique reads) 78.3 MB
ENCFF385LBY.bigWig bigWig (minus strand signal of all reads) 85.8 MB
ENCFF397CTG.bam bam (alignments) 4.0 GB
ENCFF397GSD.bigWig bigWig (minus strand signal of all reads) 80.7 MB
ENCFF411LTD.bigWig bigWig (plus strand signal of all reads) 83.2 MB
ENCFF412UMN.bigWig bigWig (plus strand signal of all reads) 74.8 MB
ENCFF424UTX.tsv tsv (gene quantifications) 9.1 MB
ENCFF438GZW.bigWig bigWig (plus strand signal of all reads) 89.0 MB
ENCFF439MYU.bam bam (alignments) 4.5 GB
ENCFF443BLK.tsv tsv (gene quantifications) 9.4 MB
ENCFF450MWE.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF475RAB.bigWig bigWig (minus strand signal of all reads) 87.3 MB
ENCFF487DKM.bigWig bigWig (minus strand signal of unique reads) 68.1 MB
ENCFF492PBX.bigWig bigWig (minus strand signal of unique reads) 69.6 MB
ENCFF505IUU.bigWig bigWig (plus strand signal of all reads) 87.5 MB
ENCFF505UKG.tsv tsv (transcript quantifications) 29.8 MB
ENCFF531WLW.fastq fastq (reads) 2.6 GB
ENCFF570PSV.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF579KAD.tsv tsv (gene quantifications) 9.4 MB
ENCFF581NTI.bigWig bigWig (minus strand signal of unique reads) 73.0 MB
ENCFF583ESN.bigWig bigWig (minus strand signal of all reads) 81.8 MB
ENCFF597GLO.bigWig bigWig (plus strand signal of all reads) 79.9 MB
ENCFF602ANL.bam bam (alignments) 4.0 GB
ENCFF620DZG.bigWig bigWig (minus strand signal of all reads) 81.8 MB
ENCFF633UEA.bigWig bigWig (plus strand signal of all reads) 89.0 MB
ENCFF633WIK.tsv tsv (differential expression quantifications) 4.3 MB
ENCFF651VFU.tsv tsv (transcript quantifications) 27.3 MB
ENCFF666QII.bigWig bigWig (plus strand signal of unique reads) 74.6 MB
ENCFF694CTT.bam bam (transcriptome alignments) 5.9 GB
ENCFF698UKF.bam bam (alignments) 4.6 GB
ENCFF707ZQO.bam bam (alignments) 4.8 GB
ENCFF719WYQ.tar tar (differential splicing quantifications) 4.0 MB
ENCFF720OTF.bigWig bigWig (minus strand signal of all reads) 87.4 MB
ENCFF725NHU.bigWig bigWig (plus strand signal of unique reads) 80.6 MB
ENCFF729MCR.tsv tsv (differential expression quantifications) 1.8 MB
ENCFF734CHK.bigWig bigWig (plus strand signal of unique reads) 80.7 MB
ENCFF748GLV.bam bam (alignments) 4.5 GB
ENCFF753BMI.bigWig bigWig (plus strand signal of unique reads) 71.6 MB
ENCFF764WBU.bigWig bigWig (plus strand signal of all reads) 76.1 MB
ENCFF765CSQ.tsv tsv (transcript quantifications) 29.8 MB
ENCFF767AHK.bigWig bigWig (minus strand signal of unique reads) 78.4 MB
ENCFF776ILO.bigWig bigWig (plus strand signal of unique reads) 75.4 MB
ENCFF781IJG.tsv tsv (gene quantifications) 9.1 MB
ENCFF788LNZ.bigWig bigWig (minus strand signal of all reads) 80.4 MB
ENCFF790EAK.bam bam (alignments) 5.4 GB
ENCFF795LWR.bigWig bigWig (plus strand signal of unique reads) 74.5 MB
ENCFF803SJE.tsv tsv (transcript quantifications) 25.3 MB
ENCFF816NNN.fastq fastq (reads) 2.5 GB
ENCFF832JGU.tsv tsv (gene quantifications) 10.4 MB
ENCFF843UNT.bigWig bigWig (plus strand signal of all reads) 82.2 MB
ENCFF865FKP.bam bam (transcriptome alignments) 7.3 GB
ENCFF884MQI.bigWig bigWig (minus strand signal of unique reads) 74.3 MB
ENCFF887HRV.bam bam (alignments) 5.4 GB
ENCFF898ENX.bigWig bigWig (minus strand signal of unique reads) 74.3 MB
ENCFF927GPT.bam bam (alignments) 5.2 GB
ENCFF931HIZ.bigWig bigWig (plus strand signal of all reads) 80.6 MB
ENCFF941NWJ.bigWig bigWig (plus strand signal of all reads) 83.2 MB
ENCFF952XWY.bigWig bigWig (plus strand signal of unique reads) 76.3 MB
ENCFF968WYO.bam bam (alignments) 4.6 GB
ENCFF970PCR.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF971SOX.bigWig bigWig (plus strand signal of all reads) 74.5 MB
ENCSR015TOO ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) mock pulldown control experiment of EWSR1

1 data file
FileTypeSize
ENCFF160WCN.fastq fastq (reads) 405.0 MB
ENCSR354XQY ENCSR · via encode_api

RNA-seq on HepG2 cells treated with an shRNA knockdown against HNRNPAB. (HNRNPAB--BGHLV22)

Homo sapiens

92 data files
FileTypeSize
ENCFF012OAT.bam bam (alignments) 3.2 GB
ENCFF013SRZ.bam bam (alignments) 3.1 GB
ENCFF048UGL.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF050DEL.bigWig bigWig (minus strand signal of all reads) 72.1 MB
ENCFF087TVM.bam bam (transcriptome alignments) 4.8 GB
ENCFF099XFU.tar tar (differential splicing quantifications) 15.0 MB
ENCFF138STC.bigWig bigWig (plus strand signal of all reads) 71.6 MB
ENCFF142AIA.bigWig bigWig (minus strand signal of unique reads) 60.9 MB
ENCFF152IYJ.bigWig bigWig (plus strand signal of all reads) 72.8 MB
ENCFF162JXN.bigWig bigWig (plus strand signal of unique reads) 60.4 MB
ENCFF180GGR.bigWig bigWig (minus strand signal of unique reads) 59.4 MB
ENCFF184EXQ.bam bam (alignments) 3.8 GB
ENCFF198RSU.bigWig bigWig (plus strand signal of unique reads) 64.7 MB
ENCFF209ONE.tsv tsv (gene quantifications) 9.4 MB
ENCFF212GHT.tar tar (differential splicing quantifications) 3.4 MB
ENCFF216TSQ.tsv tsv (transcript quantifications) 29.8 MB
ENCFF231LYA.bigWig bigWig (minus strand signal of all reads) 66.7 MB
ENCFF240GZI.bam bam (transcriptome alignments) 5.2 GB
ENCFF240RSV.bigWig bigWig (minus strand signal of unique reads) 58.5 MB
ENCFF330HEW.bigWig bigWig (minus strand signal of all reads) 65.1 MB
ENCFF332RJU.bigWig bigWig (minus strand signal of all reads) 71.0 MB
ENCFF340WKN.bigWig bigWig (plus strand signal of unique reads) 65.4 MB
ENCFF351VUT.bigWig bigWig (minus strand signal of all reads) 71.8 MB
ENCFF361QAB.bigWig bigWig (minus strand signal of all reads) 71.0 MB
ENCFF361XDT.tsv tsv (gene quantifications) 10.4 MB
ENCFF366UBV.bam bam (alignments) 3.2 GB
ENCFF371CXX.bigWig bigWig (minus strand signal of unique reads) 64.4 MB
ENCFF374KGZ.bam bam (alignments) 3.8 GB
ENCFF374WSC.bigWig bigWig (plus strand signal of all reads) 66.1 MB
ENCFF380URG.bigWig bigWig (plus strand signal of unique reads) 64.7 MB
ENCFF383BON.tsv tsv (transcript quantifications) 24.9 MB
ENCFF402QKI.bigWig bigWig (plus strand signal of unique reads) 62.6 MB
ENCFF404TVH.bigWig bigWig (plus strand signal of all reads) 65.3 MB
ENCFF412JWC.bam bam (transcriptome alignments) 5.3 GB
ENCFF414IWB.bigWig bigWig (minus strand signal of unique reads) 63.7 MB
ENCFF427SEQ.tsv tsv (gene quantifications) 9.1 MB
ENCFF440MOT.tsv tsv (transcript quantifications) 27.3 MB
ENCFF442MNV.bam bam (alignments) 3.7 GB
ENCFF456VLE.bigWig bigWig (plus strand signal of unique reads) 62.0 MB
ENCFF469EFT.bam bam (transcriptome alignments) 4.7 GB
ENCFF481MQZ.fastq fastq (reads) 2.1 GB
ENCFF497XZY.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF530FPX.fastq fastq (reads) 2.0 GB
ENCFF531FKN.bam bam (transcriptome alignments) 4.7 GB
ENCFF554DHP.bigWig bigWig (minus strand signal of all reads) 66.3 MB
ENCFF567USU.bigWig bigWig (minus strand signal of all reads) 64.6 MB
ENCFF577OHQ.bigWig bigWig (minus strand signal of unique reads) 61.6 MB
ENCFF583BQQ.bigWig bigWig (minus strand signal of all reads) 63.1 MB
ENCFF589PEU.bigWig bigWig (minus strand signal of all reads) 65.3 MB
ENCFF591XPJ.bam bam (transcriptome alignments) 4.8 GB
ENCFF596OOT.bigWig bigWig (minus strand signal of unique reads) 63.6 MB
ENCFF603JPF.bigWig bigWig (plus strand signal of all reads) 71.6 MB
ENCFF621XRR.bam bam (alignments) 3.2 GB
ENCFF624MVE.bigWig bigWig (plus strand signal of all reads) 72.8 MB
ENCFF634YDW.bam bam (alignments) 3.2 GB
ENCFF641KJL.tsv tsv (transcript quantifications) 25.3 MB
ENCFF644AKW.bigWig bigWig (plus strand signal of all reads) 67.5 MB
ENCFF651DBC.bam bam (alignments) 3.6 GB
ENCFF654LIF.bigWig bigWig (plus strand signal of all reads) 66.9 MB
ENCFF666WDQ.tar tar (differential splicing quantifications) 2.9 MB
ENCFF690IMX.bigWig bigWig (plus strand signal of unique reads) 61.8 MB
ENCFF695IKV.tsv tsv (transcript quantifications) 27.3 MB
ENCFF713YCN.tsv tsv (gene quantifications) 9.4 MB
ENCFF715UJQ.bigWig bigWig (plus strand signal of all reads) 65.7 MB
ENCFF715UNH.bigWig bigWig (plus strand signal of all reads) 72.3 MB
ENCFF719QJX.bigWig bigWig (minus strand signal of unique reads) 62.3 MB
ENCFF732YZI.tsv tsv (transcript quantifications) 29.8 MB
ENCFF739OEM.bigWig bigWig (plus strand signal of unique reads) 59.6 MB
ENCFF745OSA.bam bam (alignments) 3.7 GB
ENCFF758GUN.tsv tsv (transcript quantifications) 25.3 MB
ENCFF760HLM.bigWig bigWig (minus strand signal of all reads) 72.1 MB
ENCFF772MHL.bigWig bigWig (plus strand signal of all reads) 71.5 MB
ENCFF772ZHL.tsv tsv (gene quantifications) 10.4 MB
ENCFF803RAZ.tsv tsv (gene quantifications) 9.1 MB
ENCFF808LJU.bigWig bigWig (plus strand signal of unique reads) 65.5 MB
ENCFF821PAW.bam bam (alignments) 3.1 GB
ENCFF837YBX.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF840CJZ.bam bam (alignments) 3.7 GB
ENCFF856QPQ.bigWig bigWig (plus strand signal of unique reads) 64.4 MB
ENCFF873YWP.bigWig bigWig (minus strand signal of unique reads) 63.4 MB
ENCFF903CYP.tsv tsv (transcript quantifications) 24.9 MB
ENCFF904WXX.bigWig bigWig (plus strand signal of all reads) 63.9 MB
ENCFF909ORQ.bigWig bigWig (plus strand signal of unique reads) 66.2 MB
ENCFF930YEI.tsv tsv (differential expression quantifications) 5.7 MB
ENCFF936WLB.tsv tsv (differential expression quantifications) 4.2 MB
ENCFF941MSN.bigWig bigWig (minus strand signal of all reads) 71.0 MB
ENCFF961DOB.fastq fastq (reads) 2.1 GB
ENCFF962WAA.bigWig bigWig (plus strand signal of unique reads) 63.4 MB
ENCFF972ZQA.bigWig bigWig (minus strand signal of unique reads) 65.1 MB
ENCFF975SOB.fastq fastq (reads) 1.9 GB
ENCFF992GXZ.bigWig bigWig (minus strand signal of unique reads) 64.4 MB
ENCFF998ICS.bigWig bigWig (minus strand signal of unique reads) 60.9 MB
ENCSR065EMP ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) mock pulldown control experiment of SRSF5

1 data file
FileTypeSize
ENCFF200YPB.fastq fastq (reads) 431.3 MB
ENCSR432XUP ENCSR · via encode_api

eCLIP experiment on K562 against SRSF1

Homo sapiens

36 data files
FileTypeSize
ENCFF036OFK.bigBed bigBed (peaks) 2.8 MB
ENCFF137IAG.bigWig bigWig (plus strand signal of unique reads) 15.6 MB
ENCFF140XJG.bigBed bigBed (peaks) 1.7 MB
ENCFF205JTY.bed bed (peaks) 1.9 MB
ENCFF210EIS.bigWig bigWig (plus strand signal of unique reads) 16.0 MB
ENCFF265TZW.bigBed bigBed (peaks) 3.8 MB
ENCFF282DBV.bigBed bigBed (peaks) 2.2 MB
ENCFF287KWV.bed bed (peaks) 1.9 MB
ENCFF320HAO.bigBed bigBed (peaks) 2.2 MB
ENCFF350JLJ.bigBed bigBed (peaks) 587.3 KB
ENCFF357WUJ.bed bed (peaks) 801.5 KB
ENCFF373NZF.bed bed (peaks) 1.3 MB
ENCFF374XWQ.bam bam (alignments) 272.4 MB
ENCFF526BKN.bigWig bigWig (minus strand signal of unique reads) 21.4 MB
ENCFF548JES.bed bed (peaks) 272.4 KB
ENCFF553SIV.bigWig bigWig (plus strand signal of unique reads) 22.4 MB
ENCFF559MWF.fastq fastq (reads) 464.4 MB
ENCFF577STV.bigBed bigBed (peaks) 3.3 MB
ENCFF609IXO.bed bed (peaks) 1.3 MB
ENCFF618XPJ.bigWig bigWig (minus strand signal of unique reads) 21.6 MB
ENCFF632XBD.fastq fastq (reads) 264.7 MB
ENCFF639ESC.bigWig bigWig (minus strand signal of unique reads) 15.4 MB
ENCFF642LZT.bigWig bigWig (plus strand signal of unique reads) 22.2 MB
ENCFF647VSE.bed bed (peaks) 258.4 KB
ENCFF653HQA.bigBed bigBed (peaks) 1.3 MB
ENCFF664EPV.bam bam (alignments) 426.2 MB
ENCFF696TJG.bam bam (alignments) 268.1 MB
ENCFF708IPL.bigBed bigBed (peaks) 3.8 MB
ENCFF776RIU.fastq fastq (reads) 244.9 MB
ENCFF788UFQ.bed bed (peaks) 46.0 KB
ENCFF833PXB.bam bam (alignments) 433.1 MB
ENCFF886XUO.bed bed (peaks) 44.8 KB
ENCFF944CRL.bigBed bigBed (peaks) 600.0 KB
ENCFF952LUQ.bed bed (peaks) 755.1 KB
ENCFF982ZPQ.fastq fastq (reads) 424.3 MB
ENCFF985WYO.bigWig bigWig (minus strand signal of unique reads) 15.1 MB
ENCSR182GKG ENCSR · via encode_api

RNA-seq on HepG2 cells treated with an shRNA knockdown against KIF1C. (KIF1C_BGHLV31)

Homo sapiens

92 data files
FileTypeSize
ENCFF007LML.tsv tsv (gene quantifications) 10.4 MB
ENCFF009CEM.fastq fastq (reads) 2.1 GB
ENCFF023MUE.bigWig bigWig (plus strand signal of all reads) 83.5 MB
ENCFF032RBX.bigWig bigWig (minus strand signal of all reads) 82.5 MB
ENCFF035QVL.bigWig bigWig (minus strand signal of unique reads) 69.0 MB
ENCFF062HSP.tsv tsv (transcript quantifications) 27.4 MB
ENCFF073GGR.bigWig bigWig (plus strand signal of all reads) 83.6 MB
ENCFF087SQX.bam bam (transcriptome alignments) 4.8 GB
ENCFF128OBT.bigWig bigWig (plus strand signal of all reads) 74.8 MB
ENCFF141WWD.bigWig bigWig (plus strand signal of all reads) 83.7 MB
ENCFF164MRV.tar tar (differential splicing quantifications) 3.3 MB
ENCFF165QIV.bam bam (alignments) 3.5 GB
ENCFF170UOT.bam bam (alignments) 2.8 GB
ENCFF189IZZ.bigWig bigWig (plus strand signal of all reads) 75.0 MB
ENCFF227TBP.bigWig bigWig (plus strand signal of unique reads) 75.3 MB
ENCFF241KKR.bigWig bigWig (minus strand signal of unique reads) 73.8 MB
ENCFF246DLU.tsv tsv (transcript quantifications) 24.9 MB
ENCFF249LHY.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF263XLJ.bigWig bigWig (minus strand signal of unique reads) 67.0 MB
ENCFF301HPA.bigWig bigWig (minus strand signal of all reads) 74.8 MB
ENCFF302HMH.tsv tsv (gene quantifications) 9.1 MB
ENCFF317FCY.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF318BCX.bam bam (alignments) 3.7 GB
ENCFF332IUX.bigWig bigWig (plus strand signal of unique reads) 72.3 MB
ENCFF336CMM.bigWig bigWig (minus strand signal of unique reads) 73.4 MB
ENCFF341MTT.bigWig bigWig (plus strand signal of unique reads) 71.4 MB
ENCFF350GKS.bigWig bigWig (minus strand signal of unique reads) 69.4 MB
ENCFF364QFO.bigWig bigWig (plus strand signal of all reads) 75.0 MB
ENCFF368PSG.bigWig bigWig (minus strand signal of unique reads) 73.8 MB
ENCFF376MUH.bigWig bigWig (minus strand signal of unique reads) 69.5 MB
ENCFF378OUM.fastq fastq (reads) 2.0 GB
ENCFF409ZTO.bigWig bigWig (plus strand signal of unique reads) 74.7 MB
ENCFF437BKQ.tar tar (differential splicing quantifications) 4.0 MB
ENCFF461PUX.bigWig bigWig (plus strand signal of unique reads) 75.9 MB
ENCFF470GBK.bam bam (alignments) 2.9 GB
ENCFF490KZL.bigWig bigWig (minus strand signal of unique reads) 73.5 MB
ENCFF490OWL.tsv tsv (transcript quantifications) 29.8 MB
ENCFF506BDE.tar tar (differential splicing quantifications) 16.8 MB
ENCFF525XQP.bigWig bigWig (minus strand signal of all reads) 82.1 MB
ENCFF527KVE.bigWig bigWig (minus strand signal of all reads) 73.7 MB
ENCFF532KSX.bigWig bigWig (plus strand signal of unique reads) 71.3 MB
ENCFF546DQL.tsv tsv (transcript quantifications) 24.9 MB
ENCFF548KSU.tsv tsv (transcript quantifications) 29.8 MB
ENCFF551VZB.bigWig bigWig (minus strand signal of unique reads) 73.3 MB
ENCFF556AZF.bigWig bigWig (plus strand signal of unique reads) 70.8 MB
ENCFF576IMD.bam bam (alignments) 3.5 GB
ENCFF588VKM.bigWig bigWig (minus strand signal of all reads) 74.8 MB
ENCFF594BFE.bam bam (transcriptome alignments) 5.7 GB
ENCFF602HXS.bigWig bigWig (plus strand signal of unique reads) 75.4 MB
ENCFF606LHM.bam bam (transcriptome alignments) 5.5 GB
ENCFF608JSB.bam bam (transcriptome alignments) 4.8 GB
ENCFF617ENR.bigWig bigWig (plus strand signal of all reads) 77.4 MB
ENCFF628KJY.bam bam (transcriptome alignments) 4.9 GB
ENCFF660OKQ.bigWig bigWig (plus strand signal of all reads) 84.0 MB
ENCFF663LNN.tsv tsv (transcript quantifications) 25.3 MB
ENCFF665TYF.bam bam (alignments) 2.8 GB
ENCFF671VNN.tsv tsv (gene quantifications) 9.1 MB
ENCFF677NKT.bigWig bigWig (plus strand signal of unique reads) 70.2 MB
ENCFF684CAW.bam bam (transcriptome alignments) 5.0 GB
ENCFF690IKA.bigWig bigWig (minus strand signal of all reads) 81.8 MB
ENCFF692ZGX.bigWig bigWig (plus strand signal of unique reads) 69.1 MB
ENCFF693JST.bam bam (alignments) 2.8 GB
ENCFF693ODX.bigWig bigWig (plus strand signal of all reads) 84.0 MB
ENCFF704ZMJ.bigWig bigWig (minus strand signal of all reads) 82.1 MB
ENCFF707MIM.bigWig bigWig (plus strand signal of unique reads) 75.8 MB
ENCFF708VOL.tsv tsv (gene quantifications) 10.4 MB
ENCFF726WFK.bigWig bigWig (plus strand signal of all reads) 76.3 MB
ENCFF729YOG.bam bam (alignments) 2.8 GB
ENCFF737WYB.bigWig bigWig (minus strand signal of unique reads) 70.2 MB
ENCFF758ULO.bam bam (alignments) 2.9 GB
ENCFF763CHW.tsv tsv (gene quantifications) 9.5 MB
ENCFF766NBT.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF772JXP.tsv tsv (differential expression quantifications) 4.3 MB
ENCFF783LYV.bigWig bigWig (plus strand signal of unique reads) 75.5 MB
ENCFF818HEA.bigWig bigWig (minus strand signal of all reads) 73.1 MB
ENCFF831BIQ.bam bam (alignments) 3.7 GB
ENCFF843AWB.tsv tsv (transcript quantifications) 27.4 MB
ENCFF847GMF.bigWig bigWig (minus strand signal of unique reads) 68.0 MB
ENCFF852SGR.tsv tsv (differential expression quantifications) 2.0 MB
ENCFF854PPH.bigWig bigWig (plus strand signal of all reads) 76.1 MB
ENCFF867EMI.fastq fastq (reads) 2.0 GB
ENCFF868FXD.bigWig bigWig (minus strand signal of unique reads) 72.7 MB
ENCFF881TDP.tsv tsv (gene quantifications) 9.4 MB
ENCFF887KHA.bigWig bigWig (minus strand signal of all reads) 75.9 MB
ENCFF890NHG.tsv tsv (transcript quantifications) 25.3 MB
ENCFF902IAU.bigWig bigWig (minus strand signal of all reads) 73.5 MB
ENCFF906JJU.fastq fastq (reads) 2.0 GB
ENCFF920DDS.bigWig bigWig (minus strand signal of all reads) 82.5 MB
ENCFF926ZWL.bigWig bigWig (minus strand signal of all reads) 82.1 MB
ENCFF968SOS.bam bam (alignments) 3.6 GB
ENCFF986CBN.bam bam (alignments) 3.6 GB
ENCFF992GLR.bigWig bigWig (plus strand signal of all reads) 83.1 MB
ENCSR180XTP ENCSR · via encode_api

shRNA knockdown against NUSAP1 in HepG2 cells followed by RNA-seq. (NUSAP1_BGHLV18)

Homo sapiens

92 data files
FileTypeSize
ENCFF004LTZ.bigWig bigWig (minus strand signal of unique reads) 72.4 MB
ENCFF007TAZ.bigWig bigWig (plus strand signal of all reads) 74.3 MB
ENCFF009XFC.bigWig bigWig (plus strand signal of unique reads) 65.4 MB
ENCFF011JXD.bam bam (alignments) 4.5 GB
ENCFF027KOZ.bigWig bigWig (plus strand signal of all reads) 77.9 MB
ENCFF041KKZ.bigWig bigWig (plus strand signal of unique reads) 70.8 MB
ENCFF052IMO.bam bam (alignments) 3.3 GB
ENCFF072RNF.tsv tsv (transcript quantifications) 25.3 MB
ENCFF092GLG.bigWig bigWig (minus strand signal of all reads) 72.9 MB
ENCFF102HTA.bigWig bigWig (minus strand signal of all reads) 67.2 MB
ENCFF109RHZ.tsv tsv (transcript quantifications) 29.8 MB
ENCFF110WIT.bigWig bigWig (plus strand signal of all reads) 74.0 MB
ENCFF116CLA.bigWig bigWig (plus strand signal of all reads) 68.6 MB
ENCFF116WUD.bam bam (alignments) 3.9 GB
ENCFF119EHA.bigWig bigWig (plus strand signal of unique reads) 67.9 MB
ENCFF141KQF.bam bam (transcriptome alignments) 5.7 GB
ENCFF144VDC.bigWig bigWig (minus strand signal of all reads) 76.4 MB
ENCFF157JVT.tar tar (differential splicing quantifications) 3.1 MB
ENCFF159IZK.tar tar (differential splicing quantifications) 3.7 MB
ENCFF194DQV.bam bam (transcriptome alignments) 6.3 GB
ENCFF213IZT.bigWig bigWig (plus strand signal of unique reads) 74.3 MB
ENCFF226PZE.tsv tsv (transcript quantifications) 25.3 MB
ENCFF232RMI.bigWig bigWig (plus strand signal of all reads) 72.1 MB
ENCFF233SIY.bigWig bigWig (minus strand signal of unique reads) 63.4 MB
ENCFF238JUN.bam bam (alignments) 4.1 GB
ENCFF249QBB.tsv tsv (gene quantifications) 9.4 MB
ENCFF273NUV.tsv tsv (gene quantifications) 9.1 MB
ENCFF287UCH.tsv tsv (gene quantifications) 10.4 MB
ENCFF302XXL.bam bam (alignments) 3.4 GB
ENCFF307NUE.bigWig bigWig (minus strand signal of unique reads) 69.0 MB
ENCFF312GYR.bam bam (transcriptome alignments) 5.0 GB
ENCFF331XMT.bigWig bigWig (plus strand signal of unique reads) 66.9 MB
ENCFF341IVN.bam bam (alignments) 3.7 GB
ENCFF374KKW.bigWig bigWig (minus strand signal of unique reads) 69.0 MB
ENCFF376MMT.tsv tsv (differential expression quantifications) 1.8 MB
ENCFF378FTG.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF382NZJ.bam bam (alignments) 3.7 GB
ENCFF386XSU.tsv tsv (differential expression quantifications) 4.1 MB
ENCFF389MOE.bigWig bigWig (minus strand signal of unique reads) 72.3 MB
ENCFF391APC.bigWig bigWig (plus strand signal of all reads) 71.1 MB
ENCFF394QAJ.bam bam (transcriptome alignments) 5.6 GB
ENCFF400OHR.bigWig bigWig (minus strand signal of all reads) 76.8 MB
ENCFF402TAG.bigWig bigWig (plus strand signal of unique reads) 69.7 MB
ENCFF410NIR.bam bam (alignments) 4.3 GB
ENCFF412MVK.fastq fastq (reads) 2.2 GB
ENCFF414XML.bigWig bigWig (plus strand signal of unique reads) 70.0 MB
ENCFF415TRP.bigWig bigWig (plus strand signal of all reads) 80.3 MB
ENCFF430MAG.bigWig bigWig (minus strand signal of all reads) 75.8 MB
ENCFF445SBJ.bigWig bigWig (plus strand signal of all reads) 81.4 MB
ENCFF472HTX.tsv tsv (gene quantifications) 10.4 MB
ENCFF488WMJ.bigWig bigWig (plus strand signal of unique reads) 67.4 MB
ENCFF492RDP.bigWig bigWig (plus strand signal of unique reads) 74.3 MB
ENCFF492TDD.bam bam (alignments) 3.7 GB
ENCFF507OGG.bam bam (alignments) 4.5 GB
ENCFF527UVX.tsv tsv (gene quantifications) 9.4 MB
ENCFF540QSP.fastq fastq (reads) 2.2 GB
ENCFF564SYZ.fastq fastq (reads) 2.4 GB
ENCFF592HYZ.fastq fastq (reads) 2.5 GB
ENCFF594ABG.bigWig bigWig (minus strand signal of unique reads) 66.0 MB
ENCFF595JOG.tsv tsv (gene quantifications) 9.1 MB
ENCFF606MEW.bigWig bigWig (minus strand signal of all reads) 79.0 MB
ENCFF625MMQ.bam bam (alignments) 3.3 GB
ENCFF630UAG.bigWig bigWig (plus strand signal of all reads) 70.1 MB
ENCFF650EYR.bigWig bigWig (minus strand signal of all reads) 72.7 MB
ENCFF685VAT.bigWig bigWig (minus strand signal of all reads) 70.5 MB
ENCFF688YKF.bigWig bigWig (minus strand signal of unique reads) 65.3 MB
ENCFF704YRX.tsv tsv (transcript quantifications) 27.3 MB
ENCFF708PTR.bigWig bigWig (minus strand signal of unique reads) 67.8 MB
ENCFF734HQV.tsv tsv (differential expression quantifications) 2.8 MB
ENCFF736WYK.tsv tsv (transcript quantifications) 29.8 MB
ENCFF745XNS.bigWig bigWig (minus strand signal of unique reads) 68.3 MB
ENCFF759IWH.tsv tsv (transcript quantifications) 27.3 MB
ENCFF769LEY.bigWig bigWig (minus strand signal of all reads) 80.0 MB
ENCFF780NXF.tsv tsv (transcript quantifications) 24.9 MB
ENCFF809QUD.bigWig bigWig (plus strand signal of unique reads) 69.8 MB
ENCFF811APH.bigWig bigWig (plus strand signal of all reads) 77.0 MB
ENCFF815TXU.bigWig bigWig (minus strand signal of unique reads) 67.9 MB
ENCFF848MSN.bam bam (transcriptome alignments) 5.0 GB
ENCFF853XSC.bigWig bigWig (minus strand signal of unique reads) 72.3 MB
ENCFF853XVY.bigWig bigWig (minus strand signal of all reads) 80.0 MB
ENCFF860MGP.tsv tsv (transcript quantifications) 24.9 MB
ENCFF877KVB.bigWig bigWig (minus strand signal of all reads) 69.7 MB
ENCFF879FGI.bam bam (alignments) 4.1 GB
ENCFF898WQO.bigWig bigWig (minus strand signal of unique reads) 65.6 MB
ENCFF902TBF.bigWig bigWig (minus strand signal of all reads) 68.8 MB
ENCFF903FWT.bigWig bigWig (plus strand signal of all reads) 78.3 MB
ENCFF911FXD.tsv tsv (differential expression quantifications) 2.0 MB
ENCFF925IXT.tar tar (differential splicing quantifications) 15.3 MB
ENCFF948VKR.bam bam (transcriptome alignments) 5.5 GB
ENCFF954CNN.bigWig bigWig (plus strand signal of all reads) 81.4 MB
ENCFF956QOR.bigWig bigWig (plus strand signal of unique reads) 74.2 MB
ENCFF956XUW.bigWig bigWig (plus strand signal of unique reads) 70.8 MB
ENCSR678WOA ENCSR · via encode_api

RNA-seq on K562 cells treated with an shRNA knockdown against RBM39. (RBM39_BGKLV28)

Homo sapiens

92 data files
FileTypeSize
ENCFF018GNR.bigWig bigWig (minus strand signal of unique reads) 91.4 MB
ENCFF025CMJ.bigWig bigWig (minus strand signal of unique reads) 101.8 MB
ENCFF025KCK.bigWig bigWig (plus strand signal of unique reads) 95.8 MB
ENCFF027XCJ.bigWig bigWig (minus strand signal of all reads) 100.1 MB
ENCFF040QZN.bigWig bigWig (plus strand signal of all reads) 113.6 MB
ENCFF042NGS.bigWig bigWig (minus strand signal of unique reads) 82.6 MB
ENCFF054ORV.bigWig bigWig (minus strand signal of unique reads) 93.4 MB
ENCFF060SOT.bam bam (transcriptome alignments) 7.7 GB
ENCFF065GQP.tar tar (differential splicing quantifications) 4.1 MB
ENCFF067WJP.bigWig bigWig (plus strand signal of unique reads) 88.9 MB
ENCFF076DKC.tar tar (differential splicing quantifications) 5.4 MB
ENCFF086SAS.tsv tsv (transcript quantifications) 29.9 MB
ENCFF088EOJ.bigWig bigWig (plus strand signal of all reads) 108.3 MB
ENCFF089BZM.fastq fastq (reads) 3.9 GB
ENCFF111QOI.bigWig bigWig (minus strand signal of all reads) 111.7 MB
ENCFF116LMP.bigWig bigWig (plus strand signal of unique reads) 96.2 MB
ENCFF132PZP.bigWig bigWig (plus strand signal of all reads) 102.5 MB
ENCFF133IUU.bigWig bigWig (plus strand signal of unique reads) 104.4 MB
ENCFF138BDU.fastq fastq (reads) 4.0 GB
ENCFF141OPU.bam bam (alignments) 6.9 GB
ENCFF161DNU.bigWig bigWig (minus strand signal of unique reads) 100.9 MB
ENCFF182EZL.bigWig bigWig (plus strand signal of all reads) 117.2 MB
ENCFF190BFC.bigWig bigWig (minus strand signal of unique reads) 86.2 MB
ENCFF194DTT.bigWig bigWig (minus strand signal of all reads) 106.4 MB
ENCFF197DGX.bigWig bigWig (minus strand signal of unique reads) 101.0 MB
ENCFF216NMG.bigWig bigWig (minus strand signal of all reads) 115.4 MB
ENCFF226ZEC.bam bam (transcriptome alignments) 9.5 GB
ENCFF244LWG.bam bam (alignments) 5.7 GB
ENCFF248HXN.bam bam (alignments) 5.6 GB
ENCFF254HOJ.bigWig bigWig (plus strand signal of all reads) 92.5 MB
ENCFF256VKM.tsv tsv (transcript quantifications) 25.0 MB
ENCFF260OZM.bigWig bigWig (minus strand signal of unique reads) 93.4 MB
ENCFF265WRY.bam bam (transcriptome alignments) 7.7 GB
ENCFF270GDJ.bigWig bigWig (plus strand signal of all reads) 106.3 MB
ENCFF282HPB.bigWig bigWig (minus strand signal of all reads) 91.6 MB
ENCFF296ATE.tsv tsv (transcript quantifications) 25.4 MB
ENCFF320GQK.bigWig bigWig (minus strand signal of all reads) 115.4 MB
ENCFF333UZU.bam bam (alignments) 5.6 GB
ENCFF337BXS.bam bam (alignments) 7.1 GB
ENCFF346DGW.bigWig bigWig (plus strand signal of unique reads) 88.8 MB
ENCFF354ESV.bigWig bigWig (plus strand signal of all reads) 117.2 MB
ENCFF374LRP.bam bam (transcriptome alignments) 8.8 GB
ENCFF375FEL.bigWig bigWig (plus strand signal of unique reads) 97.8 MB
ENCFF379BBL.bam bam (transcriptome alignments) 8.3 GB
ENCFF386CLA.tsv tsv (gene quantifications) 10.4 MB
ENCFF409HCT.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF417CJC.tsv tsv (gene quantifications) 9.1 MB
ENCFF422XCY.tsv tsv (transcript quantifications) 27.5 MB
ENCFF428LWE.bigWig bigWig (plus strand signal of unique reads) 95.9 MB
ENCFF453GOE.bigWig bigWig (plus strand signal of unique reads) 85.3 MB
ENCFF453GTC.bam bam (alignments) 5.7 GB
ENCFF462KUK.bigWig bigWig (plus strand signal of unique reads) 94.1 MB
ENCFF466NER.bigWig bigWig (minus strand signal of unique reads) 93.5 MB
ENCFF481SFU.bigWig bigWig (minus strand signal of all reads) 106.4 MB
ENCFF493QFO.tsv tsv (gene quantifications) 10.4 MB
ENCFF502BRI.bam bam (alignments) 7.1 GB
ENCFF515MCX.tsv tsv (differential expression quantifications) 2.0 MB
ENCFF556MQK.bigWig bigWig (plus strand signal of unique reads) 103.7 MB
ENCFF586PFA.bigWig bigWig (plus strand signal of all reads) 107.0 MB
ENCFF588TJV.bigWig bigWig (plus strand signal of all reads) 103.1 MB
ENCFF591GMM.tsv tsv (differential expression quantifications) 1.6 MB
ENCFF599ABA.tsv tsv (transcript quantifications) 25.4 MB
ENCFF617KOB.bigWig bigWig (minus strand signal of all reads) 105.1 MB
ENCFF628FDC.tar tar (differential splicing quantifications) 16.2 MB
ENCFF628JKG.bigWig bigWig (minus strand signal of all reads) 104.1 MB
ENCFF630XSN.tsv tsv (transcript quantifications) 29.9 MB
ENCFF648RHR.bam bam (alignments) 5.7 GB
ENCFF652VXZ.bam bam (alignments) 6.7 GB
ENCFF681TZJ.tsv tsv (differential expression quantifications) 4.3 MB
ENCFF690FNB.fastq fastq (reads) 4.1 GB
ENCFF708YAU.bigWig bigWig (plus strand signal of all reads) 108.3 MB
ENCFF723ZFX.bigWig bigWig (plus strand signal of all reads) 93.4 MB
ENCFF726KCJ.tsv tsv (gene quantifications) 9.5 MB
ENCFF733KKR.bam bam (alignments) 5.6 GB
ENCFF750MHP.bigWig bigWig (minus strand signal of all reads) 90.3 MB
ENCFF751OYS.bigWig bigWig (minus strand signal of unique reads) 93.9 MB
ENCFF753LIY.tsv tsv (transcript quantifications) 25.0 MB
ENCFF754DQS.tsv tsv (transcript quantifications) 27.4 MB
ENCFF761ZSO.bigWig bigWig (plus strand signal of unique reads) 103.4 MB
ENCFF790FEI.bigWig bigWig (minus strand signal of unique reads) 95.2 MB
ENCFF804ZMP.bigWig bigWig (plus strand signal of unique reads) 96.4 MB
ENCFF820LOC.bam bam (alignments) 6.9 GB
ENCFF821PPO.bigWig bigWig (minus strand signal of unique reads) 86.5 MB
ENCFF839OHG.bigWig bigWig (minus strand signal of all reads) 101.4 MB
ENCFF851NKA.tsv tsv (gene quantifications) 9.1 MB
ENCFF886LVU.bam bam (alignments) 6.9 GB
ENCFF889PHC.bam bam (transcriptome alignments) 8.3 GB
ENCFF935NVY.bigWig bigWig (minus strand signal of all reads) 95.3 MB
ENCFF952LZP.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF968KZN.tsv tsv (gene quantifications) 9.5 MB
ENCFF971KXV.fastq fastq (reads) 4.0 GB
ENCFF994GTJ.bigWig bigWig (plus strand signal of all reads) 97.6 MB
ENCSR965DLL ENCSR · via encode_api

eCLIP experiment on HepG2 against SFPQ

Homo sapiens

36 data files
FileTypeSize
ENCFF056KWN.bam bam (alignments) 276.2 MB
ENCFF110BEO.bigBed bigBed (peaks) 663.0 KB
ENCFF128SFP.bed bed (peaks) 73.6 KB
ENCFF130CRL.bigBed bigBed (peaks) 2.2 MB
ENCFF135ZMX.bigBed bigBed (peaks) 313.1 KB
ENCFF139NXB.bed bed (peaks) 50.4 KB
ENCFF199CPK.bigWig bigWig (minus strand signal of unique reads) 17.2 MB
ENCFF210JXR.bigWig bigWig (minus strand signal of unique reads) 29.1 MB
ENCFF214QPY.bigWig bigWig (plus strand signal of unique reads) 18.0 MB
ENCFF221WOF.bed bed (peaks) 2.7 MB
ENCFF285AWF.bigBed bigBed (peaks) 2.3 MB
ENCFF295QPY.bigWig bigWig (minus strand signal of unique reads) 29.2 MB
ENCFF315AQY.fastq fastq (reads) 539.5 MB
ENCFF329REE.bed bed (peaks) 212.8 KB
ENCFF354MQU.bigBed bigBed (peaks) 220.9 KB
ENCFF417EZT.bed bed (peaks) 1.4 MB
ENCFF464KFB.bigWig bigWig (minus strand signal of unique reads) 17.1 MB
ENCFF565CQA.bigWig bigWig (plus strand signal of unique reads) 18.0 MB
ENCFF617MDS.fastq fastq (reads) 318.3 MB
ENCFF634OXH.bigBed bigBed (peaks) 985.7 KB
ENCFF676PEK.bed bed (peaks) 303.6 KB
ENCFF681EDG.bigWig bigWig (plus strand signal of unique reads) 30.3 MB
ENCFF784TOV.bigBed bigBed (peaks) 5.0 MB
ENCFF788NZP.bigBed bigBed (peaks) 5.0 MB
ENCFF801OMP.bigBed bigBed (peaks) 440.0 KB
ENCFF805LKH.bed bed (peaks) 49.9 KB
ENCFF822GVL.fastq fastq (reads) 293.9 MB
ENCFF823MPG.bigWig bigWig (plus strand signal of unique reads) 30.2 MB
ENCFF849HII.bam bam (alignments) 277.9 MB
ENCFF857OFG.bam bam (alignments) 556.8 MB
ENCFF862AWU.bam bam (alignments) 561.6 MB
ENCFF867TQG.bigBed bigBed (peaks) 1.2 MB
ENCFF919FIY.bed bed (peaks) 1.4 MB
ENCFF937XDO.bed bed (peaks) 105.5 KB
ENCFF960OTE.bed bed (peaks) 2.7 MB
ENCFF981KZD.fastq fastq (reads) 510.8 MB
ENCSR128VXC ENCSR · via encode_api

eCLIP experiment on K562 against SND1

Homo sapiens

36 data files
FileTypeSize
ENCFF029JEG.bigWig bigWig (plus strand signal of unique reads) 23.8 MB
ENCFF061NQX.bed bed (peaks) 250.0 KB
ENCFF114EYT.bigBed bigBed (peaks) 4.5 MB
ENCFF128MAP.fastq fastq (reads) 685.4 MB
ENCFF157LOT.fastq fastq (reads) 585.1 MB
ENCFF170LCY.bigBed bigBed (peaks) 4.1 MB
ENCFF211QBY.bigWig bigWig (plus strand signal of unique reads) 22.3 MB
ENCFF211TRO.bed bed (peaks) 96.5 KB
ENCFF237HET.fastq fastq (reads) 638.8 MB
ENCFF322FYT.bigBed bigBed (peaks) 1.7 MB
ENCFF331VCF.bed bed (peaks) 96.7 KB
ENCFF341KSL.bed bed (peaks) 2.3 MB
ENCFF351QXF.bam bam (alignments) 472.4 MB
ENCFF357NHT.bed bed (peaks) 731.7 KB
ENCFF360RDW.bed bed (peaks) 885.6 KB
ENCFF367EEH.bam bam (alignments) 480.7 MB
ENCFF375WFM.bigBed bigBed (peaks) 4.1 MB
ENCFF430VKJ.bigBed bigBed (peaks) 4.5 MB
ENCFF479VZE.bed bed (peaks) 2.3 MB
ENCFF567VFQ.bigWig bigWig (plus strand signal of unique reads) 24.1 MB
ENCFF577WGX.bigWig bigWig (minus strand signal of unique reads) 23.3 MB
ENCFF612RZN.bam bam (alignments) 442.3 MB
ENCFF615YQJ.bigWig bigWig (plus strand signal of unique reads) 22.1 MB
ENCFF664JCH.bigWig bigWig (minus strand signal of unique reads) 21.4 MB
ENCFF675MWW.bigBed bigBed (peaks) 1.4 MB
ENCFF677MQI.bed bed (peaks) 2.1 MB
ENCFF729WJN.bigBed bigBed (peaks) 726.4 KB
ENCFF739SGD.bigBed bigBed (peaks) 3.0 MB
ENCFF867TFQ.bam bam (alignments) 435.8 MB
ENCFF869HBJ.bigWig bigWig (minus strand signal of unique reads) 23.1 MB
ENCFF871WGQ.fastq fastq (reads) 543.7 MB
ENCFF873PCX.bigBed bigBed (peaks) 2.5 MB
ENCFF891DWW.bigBed bigBed (peaks) 605.3 KB
ENCFF934MCU.bigWig bigWig (minus strand signal of unique reads) 21.6 MB
ENCFF971LCF.bed bed (peaks) 2.1 MB
ENCFF982QUT.bed bed (peaks) 317.8 KB
ENCSR267OLV ENCSR · via encode_api

eCLIP experiment on K562 against SF3B4

Homo sapiens

36 data files
FileTypeSize
ENCFF009QOP.bigWig bigWig (plus strand signal of unique reads) 13.2 MB
ENCFF013ZHF.bed bed (peaks) 1.3 MB
ENCFF036ZJT.fastq fastq (reads) 732.7 MB
ENCFF063MAF.fastq fastq (reads) 739.4 MB
ENCFF095KWC.bam bam (alignments) 193.1 MB
ENCFF115VOI.bigBed bigBed (peaks) 2.6 MB
ENCFF173BOO.bam bam (alignments) 236.2 MB
ENCFF177LYJ.bigWig bigWig (minus strand signal of unique reads) 12.6 MB
ENCFF187VMX.bed bed (peaks) 229.3 KB
ENCFF220ERG.bigBed bigBed (peaks) 2.6 MB
ENCFF238HVL.bigBed bigBed (peaks) 663.7 KB
ENCFF252JLE.bigWig bigWig (plus strand signal of unique reads) 11.4 MB
ENCFF254LKZ.bed bed (peaks) 305.1 KB
ENCFF258MIJ.bigBed bigBed (peaks) 2.9 MB
ENCFF363ZXR.fastq fastq (reads) 614.8 MB
ENCFF378VIS.bigWig bigWig (minus strand signal of unique reads) 10.8 MB
ENCFF379LAL.bam bam (alignments) 198.2 MB
ENCFF453HOH.bigBed bigBed (peaks) 1.4 MB
ENCFF477PBU.bam bam (alignments) 242.7 MB
ENCFF480NTZ.bigWig bigWig (minus strand signal of unique reads) 12.8 MB
ENCFF498SRM.bed bed (peaks) 1.3 MB
ENCFF528NAX.bigBed bigBed (peaks) 2.8 MB
ENCFF649GEE.bed bed (peaks) 222.6 KB
ENCFF658CBT.bed bed (peaks) 1.3 MB
ENCFF686EKJ.bigBed bigBed (peaks) 2.6 MB
ENCFF707MUI.bigBed bigBed (peaks) 2.6 MB
ENCFF714TSS.bigBed bigBed (peaks) 1.4 MB
ENCFF716HYU.bigWig bigWig (plus strand signal of unique reads) 11.2 MB
ENCFF719LDN.bigBed bigBed (peaks) 665.7 KB
ENCFF771EQA.bed bed (peaks) 793.9 KB
ENCFF788GEX.bigWig bigWig (plus strand signal of unique reads) 13.3 MB
ENCFF788PZS.bed bed (peaks) 1.3 MB
ENCFF809CSI.bigWig bigWig (minus strand signal of unique reads) 11.0 MB
ENCFF873DZN.bed bed (peaks) 828.4 KB
ENCFF900YPE.fastq fastq (reads) 622.6 MB
ENCFF930OND.bed bed (peaks) 306.6 KB
ENCSR929PXS ENCSR · via encode_api

RNA-seq on HepG2 cells treated with an shRNA knockdown against CEBPZ. (CEBPZ_BGHLV30)

Homo sapiens

92 data files
FileTypeSize
ENCFF007GER.tsv tsv (transcript quantifications) 25.3 MB
ENCFF007HOB.bigWig bigWig (minus strand signal of unique reads) 71.5 MB
ENCFF011PGP.tsv tsv (transcript quantifications) 24.9 MB
ENCFF021LQO.tsv tsv (transcript quantifications) 29.8 MB
ENCFF022CJU.bam bam (alignments) 4.1 GB
ENCFF025KRR.bigWig bigWig (minus strand signal of unique reads) 67.5 MB
ENCFF044VPP.tsv tsv (transcript quantifications) 27.3 MB
ENCFF046HDM.bigWig bigWig (minus strand signal of unique reads) 63.0 MB
ENCFF069XDE.tsv tsv (differential expression quantifications) 4.1 MB
ENCFF074UEE.bigWig bigWig (plus strand signal of all reads) 76.9 MB
ENCFF074YCV.bigWig bigWig (plus strand signal of all reads) 75.1 MB
ENCFF094CMP.bigWig bigWig (minus strand signal of all reads) 70.9 MB
ENCFF099LDN.tsv tsv (transcript quantifications) 27.3 MB
ENCFF104ARJ.tsv tsv (gene quantifications) 9.5 MB
ENCFF124QSO.bigWig bigWig (minus strand signal of all reads) 79.2 MB
ENCFF169GZT.bigWig bigWig (minus strand signal of all reads) 80.5 MB
ENCFF169IAW.bigWig bigWig (plus strand signal of unique reads) 67.4 MB
ENCFF184UGR.bigWig bigWig (plus strand signal of unique reads) 73.4 MB
ENCFF184UUP.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF203VJK.bigWig bigWig (plus strand signal of unique reads) 69.2 MB
ENCFF211VPS.bam bam (alignments) 4.3 GB
ENCFF216ABM.bam bam (alignments) 3.7 GB
ENCFF225GEM.bigWig bigWig (minus strand signal of unique reads) 63.5 MB
ENCFF233DRW.fastq fastq (reads) 2.1 GB
ENCFF240EUM.bigWig bigWig (minus strand signal of all reads) 80.6 MB
ENCFF261FNC.tsv tsv (gene quantifications) 9.1 MB
ENCFF267CXJ.bigWig bigWig (plus strand signal of all reads) 80.5 MB
ENCFF286QSS.bigWig bigWig (plus strand signal of unique reads) 74.0 MB
ENCFF289NRB.bam bam (alignments) 3.5 GB
ENCFF312WFL.bigWig bigWig (minus strand signal of unique reads) 67.3 MB
ENCFF338ENJ.bigWig bigWig (minus strand signal of all reads) 65.3 MB
ENCFF344VIT.bam bam (transcriptome alignments) 5.8 GB
ENCFF347KWA.bam bam (alignments) 3.6 GB
ENCFF349JIH.bigWig bigWig (minus strand signal of unique reads) 67.3 MB
ENCFF349WOH.tsv tsv (gene quantifications) 9.1 MB
ENCFF354TPP.bigWig bigWig (minus strand signal of unique reads) 68.2 MB
ENCFF357OTS.bigWig bigWig (minus strand signal of unique reads) 67.3 MB
ENCFF365QQO.tsv tsv (transcript quantifications) 24.9 MB
ENCFF376PKY.tsv tsv (gene quantifications) 9.5 MB
ENCFF381AMB.bigWig bigWig (plus strand signal of all reads) 72.4 MB
ENCFF386FXT.bigWig bigWig (plus strand signal of unique reads) 72.8 MB
ENCFF391FXZ.bam bam (alignments) 3.4 GB
ENCFF395MZL.bigWig bigWig (plus strand signal of unique reads) 69.2 MB
ENCFF399YGJ.bam bam (transcriptome alignments) 6.6 GB
ENCFF442VMZ.bam bam (alignments) 4.3 GB
ENCFF451YQK.bigWig bigWig (plus strand signal of all reads) 69.1 MB
ENCFF473JIZ.bigWig bigWig (plus strand signal of all reads) 75.4 MB
ENCFF480IID.bigWig bigWig (plus strand signal of all reads) 82.0 MB
ENCFF480TFM.bigWig bigWig (plus strand signal of all reads) 66.8 MB
ENCFF484BIP.bigWig bigWig (plus strand signal of unique reads) 69.2 MB
ENCFF519WLS.tsv tsv (differential expression quantifications) 1.8 MB
ENCFF524ONW.bigWig bigWig (plus strand signal of all reads) 74.1 MB
ENCFF531ZNM.fastq fastq (reads) 2.2 GB
ENCFF533BTP.bigWig bigWig (minus strand signal of all reads) 73.6 MB
ENCFF537CWZ.tar tar (differential splicing quantifications) 3.0 MB
ENCFF557FFT.tsv tsv (transcript quantifications) 25.3 MB
ENCFF591QXG.bam bam (alignments) 3.4 GB
ENCFF601GRW.bigWig bigWig (minus strand signal of all reads) 72.8 MB
ENCFF620SBM.bigWig bigWig (plus strand signal of unique reads) 70.1 MB
ENCFF652LMZ.bigWig bigWig (minus strand signal of unique reads) 65.4 MB
ENCFF653UMJ.bigWig bigWig (minus strand signal of unique reads) 70.9 MB
ENCFF654DPZ.bigWig bigWig (plus strand signal of all reads) 76.9 MB
ENCFF669CQI.bam bam (transcriptome alignments) 4.8 GB
ENCFF673OHX.bam bam (alignments) 3.0 GB
ENCFF688SCQ.tar tar (differential splicing quantifications) 15.3 MB
ENCFF689RYD.bigWig bigWig (minus strand signal of all reads) 74.1 MB
ENCFF697YFP.bam bam (transcriptome alignments) 5.5 GB
ENCFF698SFI.bigWig bigWig (minus strand signal of all reads) 75.4 MB
ENCFF718GPH.tsv tsv (gene quantifications) 10.4 MB
ENCFF725TWG.bam bam (transcriptome alignments) 5.7 GB
ENCFF737UFN.bigWig bigWig (plus strand signal of all reads) 82.0 MB
ENCFF751RZO.bigWig bigWig (minus strand signal of all reads) 67.7 MB
ENCFF761POY.bigWig bigWig (plus strand signal of unique reads) 64.8 MB
ENCFF766SON.bigWig bigWig (minus strand signal of all reads) 69.0 MB
ENCFF793ZSC.bam bam (alignments) 3.7 GB
ENCFF819LFG.tsv tsv (transcript quantifications) 29.8 MB
ENCFF822ZAH.tsv tsv (gene quantifications) 10.4 MB
ENCFF826ILI.bigWig bigWig (minus strand signal of all reads) 75.4 MB
ENCFF830HEY.bigWig bigWig (plus strand signal of unique reads) 65.2 MB
ENCFF846JEE.tsv tsv (differential expression quantifications) 2.8 MB
ENCFF851WLH.bigWig bigWig (plus strand signal of unique reads) 61.7 MB
ENCFF873PVA.bam bam (alignments) 3.0 GB
ENCFF925SHM.bam bam (alignments) 3.0 GB
ENCFF940YOX.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF954NTL.fastq fastq (reads) 2.5 GB
ENCFF957ACY.bam bam (transcriptome alignments) 4.8 GB
ENCFF957BXS.bigWig bigWig (minus strand signal of unique reads) 72.1 MB
ENCFF958YTQ.fastq fastq (reads) 2.5 GB
ENCFF963IZL.bigWig bigWig (plus strand signal of all reads) 70.5 MB
ENCFF971CZY.bigWig bigWig (minus strand signal of unique reads) 59.9 MB
ENCFF974AVQ.tar tar (differential splicing quantifications) 3.5 MB
ENCFF985CGE.bigWig bigWig (plus strand signal of unique reads) 69.2 MB
ENCSR754NDA ENCSR · via encode_api

eCLIP experiment on HepG2 against RBM15

Homo sapiens

36 data files
FileTypeSize
ENCFF017HYK.bed bed (peaks) 2.4 MB
ENCFF047BAY.bed bed (peaks) 412.3 KB
ENCFF053WWX.bigBed bigBed (peaks) 3.9 MB
ENCFF054VLU.bed bed (peaks) 32.5 KB
ENCFF059JYI.bigWig bigWig (minus strand signal of unique reads) 22.2 MB
ENCFF060IFR.fastq fastq (reads) 1.0 GB
ENCFF164MLB.bigBed bigBed (peaks) 1.9 MB
ENCFF165VFF.bed bed (peaks) 2.3 MB
ENCFF172MCY.fastq fastq (reads) 1.1 GB
ENCFF200HBN.bigWig bigWig (minus strand signal of unique reads) 5.8 MB
ENCFF209PMC.bed bed (peaks) 1.1 MB
ENCFF261SEG.bam bam (alignments) 114.2 MB
ENCFF311HXQ.bigBed bigBed (peaks) 1.5 MB
ENCFF326UBV.bigBed bigBed (peaks) 595.8 KB
ENCFF415HAC.bam bam (alignments) 459.3 MB
ENCFF496QBW.bigBed bigBed (peaks) 992.3 KB
ENCFF499LMU.bam bam (alignments) 120.2 MB
ENCFF556ONJ.bigBed bigBed (peaks) 1.8 MB
ENCFF562QVD.bam bam (alignments) 437.6 MB
ENCFF568VVF.bigWig bigWig (plus strand signal of unique reads) 23.0 MB
ENCFF626BOU.bigBed bigBed (peaks) 4.7 MB
ENCFF628YNI.bed bed (peaks) 801.2 KB
ENCFF630BAM.bigWig bigWig (plus strand signal of unique reads) 23.9 MB
ENCFF741TBO.bigBed bigBed (peaks) 2.4 MB
ENCFF772XRY.bed bed (peaks) 318.4 KB
ENCFF782GYB.bed bed (peaks) 1.1 MB
ENCFF853TEI.bigBed bigBed (peaks) 4.6 MB
ENCFF869TEZ.fastq fastq (reads) 690.8 MB
ENCFF873KII.bigBed bigBed (peaks) 3.2 MB
ENCFF882OPA.bigWig bigWig (plus strand signal of unique reads) 5.8 MB
ENCFF923FKJ.fastq fastq (reads) 634.3 MB
ENCFF946NNP.bigWig bigWig (minus strand signal of unique reads) 23.0 MB
ENCFF957LNV.bigWig bigWig (plus strand signal of unique reads) 6.0 MB
ENCFF963GEG.bigWig bigWig (minus strand signal of unique reads) 5.6 MB
ENCFF971BBY.bed bed (peaks) 1.1 MB
ENCFF982RHC.bed bed (peaks) 32.9 KB
ENCSR307YIW ENCSR · via encode_api

eCLIP experiment on K562 against EIF4G2

Homo sapiens

36 data files
FileTypeSize
ENCFF072EQT.bed bed (peaks) 556.8 KB
ENCFF118NIZ.bam bam (alignments) 137.5 MB
ENCFF141IZT.bigWig bigWig (plus strand signal of unique reads) 10.8 MB
ENCFF207BXK.bed bed (peaks) 98.1 KB
ENCFF285CJS.bigWig bigWig (minus strand signal of unique reads) 10.1 MB
ENCFF301BRQ.bigBed bigBed (peaks) 1.9 MB
ENCFF305TMB.bigWig bigWig (plus strand signal of unique reads) 9.0 MB
ENCFF346ZGM.bigBed bigBed (peaks) 1.8 MB
ENCFF378UZW.bigBed bigBed (peaks) 500.9 KB
ENCFF404DLL.bigBed bigBed (peaks) 483.9 KB
ENCFF414TML.bigWig bigWig (minus strand signal of unique reads) 8.5 MB
ENCFF447XAU.bigWig bigWig (minus strand signal of unique reads) 8.5 MB
ENCFF462XFB.bed bed (peaks) 830.9 KB
ENCFF489PBJ.bigBed bigBed (peaks) 1.8 MB
ENCFF512MNG.bed bed (peaks) 885.8 KB
ENCFF537IFC.fastq fastq (reads) 327.2 MB
ENCFF577PGM.bigWig bigWig (minus strand signal of unique reads) 10.1 MB
ENCFF596HRG.bigBed bigBed (peaks) 986.2 KB
ENCFF614FCA.bigWig bigWig (plus strand signal of unique reads) 9.0 MB
ENCFF626NQT.bam bam (alignments) 168.8 MB
ENCFF635HSX.bed bed (peaks) 508.5 KB
ENCFF648LCX.bed bed (peaks) 97.4 KB
ENCFF683WKJ.fastq fastq (reads) 349.7 MB
ENCFF699HKX.fastq fastq (reads) 215.1 MB
ENCFF723JSM.fastq fastq (reads) 229.1 MB
ENCFF767ZTI.bigBed bigBed (peaks) 1.7 MB
ENCFF819PCC.bed bed (peaks) 213.6 KB
ENCFF858JIO.bigBed bigBed (peaks) 1.7 MB
ENCFF873WNB.bam bam (alignments) 171.1 MB
ENCFF904UGT.bigBed bigBed (peaks) 1.2 MB
ENCFF920LSC.bed bed (peaks) 886.2 KB
ENCFF932YYV.bigWig bigWig (plus strand signal of unique reads) 10.8 MB
ENCFF957YHP.bigBed bigBed (peaks) 1.8 MB
ENCFF977COP.bed bed (peaks) 831.0 KB
ENCFF978RGR.bed bed (peaks) 196.6 KB
ENCFF996PFW.bam bam (alignments) 135.3 MB
ENCSR373ODC ENCSR · via encode_api

eCLIP experiment on HepG2 against SMNDC1

Homo sapiens

36 data files
FileTypeSize
ENCFF110YDG.bam bam (alignments) 147.7 MB
ENCFF125BMO.bam bam (alignments) 167.4 MB
ENCFF157STJ.bigBed bigBed (peaks) 607.1 KB
ENCFF161SFC.bigWig bigWig (plus strand signal of unique reads) 7.9 MB
ENCFF166OFV.bigBed bigBed (peaks) 1.3 MB
ENCFF169YTC.bigBed bigBed (peaks) 283.1 KB
ENCFF189VWQ.bigBed bigBed (peaks) 968.0 KB
ENCFF207JIK.bed bed (peaks) 410.0 KB
ENCFF230AER.bed bed (peaks) 504.4 KB
ENCFF240MCZ.bed bed (peaks) 755.6 KB
ENCFF279REA.bed bed (peaks) 140.4 KB
ENCFF282DDB.bigWig bigWig (minus strand signal of unique reads) 7.3 MB
ENCFF288HXM.bigWig bigWig (minus strand signal of unique reads) 6.5 MB
ENCFF320TDT.bigWig bigWig (plus strand signal of unique reads) 7.7 MB
ENCFF347ARQ.fastq fastq (reads) 261.8 MB
ENCFF356SSO.bed bed (peaks) 499.7 KB
ENCFF403AXO.bigBed bigBed (peaks) 1.1 MB
ENCFF428AMR.bigWig bigWig (plus strand signal of unique reads) 6.6 MB
ENCFF468CQU.bam bam (alignments) 171.4 MB
ENCFF478LAF.bigWig bigWig (plus strand signal of unique reads) 6.7 MB
ENCFF497HWV.bigBed bigBed (peaks) 329.8 KB
ENCFF530KKM.bigBed bigBed (peaks) 867.5 KB
ENCFF588UIR.bed bed (peaks) 747.6 KB
ENCFF590MHG.bigWig bigWig (minus strand signal of unique reads) 6.4 MB
ENCFF605XKA.bed bed (peaks) 91.5 KB
ENCFF607ZGH.bed bed (peaks) 267.7 KB
ENCFF643XEW.fastq fastq (reads) 198.8 MB
ENCFF653FZA.bigBed bigBed (peaks) 1.7 MB
ENCFF693EMF.bed bed (peaks) 8.6 KB
ENCFF736RYV.bed bed (peaks) 7.8 KB
ENCFF785IEU.bigWig bigWig (minus strand signal of unique reads) 7.4 MB
ENCFF893TFI.bigBed bigBed (peaks) 1.3 MB
ENCFF911CAB.fastq fastq (reads) 266.0 MB
ENCFF963AVW.fastq fastq (reads) 203.8 MB
ENCFF966TSJ.bam bam (alignments) 151.2 MB
ENCFF967HTY.bigBed bigBed (peaks) 961.0 KB
ENCSR265ZIS ENCSR · via encode_api

eCLIP experiment on HepG2 against GTF2F1

Homo sapiens

36 data files
FileTypeSize
ENCFF002HYO.bed bed (peaks) 91.7 KB
ENCFF092IJR.bed bed (peaks) 1.4 MB
ENCFF129JQP.bigWig bigWig (plus strand signal of unique reads) 19.9 MB
ENCFF157WNL.bam bam (alignments) 333.9 MB
ENCFF178PGX.bed bed (peaks) 188.7 KB
ENCFF240QYG.bed bed (peaks) 1.5 MB
ENCFF241SUC.bed bed (peaks) 92.9 KB
ENCFF252ZKZ.bed bed (peaks) 1.5 MB
ENCFF264ZRY.bigWig bigWig (plus strand signal of unique reads) 19.2 MB
ENCFF321BPE.fastq fastq (reads) 374.9 MB
ENCFF326CJU.bigWig bigWig (minus strand signal of unique reads) 19.2 MB
ENCFF334DBN.bigBed bigBed (peaks) 2.4 MB
ENCFF400HJB.bam bam (alignments) 338.6 MB
ENCFF410GEU.bed bed (peaks) 187.1 KB
ENCFF418SKL.bed bed (peaks) 535.4 KB
ENCFF498YIO.bam bam (alignments) 345.4 MB
ENCFF507ECO.bigBed bigBed (peaks) 473.7 KB
ENCFF560XDO.bigBed bigBed (peaks) 2.8 MB
ENCFF567SQB.bigBed bigBed (peaks) 456.6 KB
ENCFF587LRZ.bam bam (alignments) 355.3 MB
ENCFF613ASX.bigWig bigWig (minus strand signal of unique reads) 18.6 MB
ENCFF613QDB.fastq fastq (reads) 366.1 MB
ENCFF692APB.fastq fastq (reads) 362.0 MB
ENCFF694DGQ.bigWig bigWig (plus strand signal of unique reads) 18.6 MB
ENCFF745LHE.bigBed bigBed (peaks) 2.9 MB
ENCFF747FBU.fastq fastq (reads) 345.0 MB
ENCFF774GHB.bigWig bigWig (minus strand signal of unique reads) 18.8 MB
ENCFF776AWV.bigWig bigWig (plus strand signal of unique reads) 19.4 MB
ENCFF829PCH.bigBed bigBed (peaks) 1.2 MB
ENCFF830FZH.bed bed (peaks) 1.4 MB
ENCFF865ETW.bigBed bigBed (peaks) 1.9 MB
ENCFF882QSZ.bigWig bigWig (minus strand signal of unique reads) 17.9 MB
ENCFF899VWR.bigBed bigBed (peaks) 2.0 MB
ENCFF922ETP.bigBed bigBed (peaks) 1.0 MB
ENCFF950LOA.bed bed (peaks) 542.4 KB
ENCFF973THL.bigBed bigBed (peaks) 2.5 MB
ENCSR028ITN ENCSR · via encode_api

shRNA knockdown against PCBP2 in HepG2 cells followed by RNA-seq. (PCBP2 BGHLV14)

Homo sapiens

92 data files
FileTypeSize
ENCFF009JME.tsv tsv (gene quantifications) 9.1 MB
ENCFF017PVQ.fastq fastq (reads) 2.6 GB
ENCFF037NIU.tsv tsv (transcript quantifications) 27.3 MB
ENCFF049FDH.bam bam (transcriptome alignments) 6.3 GB
ENCFF059PTC.bigWig bigWig (minus strand signal of all reads) 87.9 MB
ENCFF065YFQ.tsv tsv (gene quantifications) 9.4 MB
ENCFF068LRE.bam bam (alignments) 4.7 GB
ENCFF069JBJ.bigWig bigWig (minus strand signal of all reads) 80.0 MB
ENCFF074WRE.bigWig bigWig (plus strand signal of all reads) 80.3 MB
ENCFF100FBD.bigWig bigWig (minus strand signal of all reads) 87.8 MB
ENCFF108BRW.bigWig bigWig (plus strand signal of all reads) 86.2 MB
ENCFF111VKE.bam bam (alignments) 4.6 GB
ENCFF124ARS.tsv tsv (transcript quantifications) 24.9 MB
ENCFF124STI.bigWig bigWig (plus strand signal of all reads) 77.7 MB
ENCFF131SJN.bam bam (transcriptome alignments) 5.6 GB
ENCFF132YOV.tsv tsv (gene quantifications) 10.4 MB
ENCFF140HXI.bigWig bigWig (plus strand signal of unique reads) 72.7 MB
ENCFF147SRD.bigWig bigWig (minus strand signal of unique reads) 74.9 MB
ENCFF155GEL.bam bam (alignments) 4.8 GB
ENCFF168HRD.bigWig bigWig (minus strand signal of unique reads) 78.7 MB
ENCFF178LKX.tsv tsv (transcript quantifications) 29.8 MB
ENCFF185ACD.bigWig bigWig (plus strand signal of all reads) 75.9 MB
ENCFF201DAB.fastq fastq (reads) 2.6 GB
ENCFF207ZDB.bigWig bigWig (plus strand signal of unique reads) 73.9 MB
ENCFF218QOG.bigWig bigWig (plus strand signal of unique reads) 78.7 MB
ENCFF228DOQ.bigWig bigWig (plus strand signal of all reads) 89.2 MB
ENCFF233HQD.bigWig bigWig (plus strand signal of all reads) 78.7 MB
ENCFF235IUJ.bam bam (alignments) 4.1 GB
ENCFF248AKB.bam bam (transcriptome alignments) 6.3 GB
ENCFF263RWL.fastq fastq (reads) 2.5 GB
ENCFF272OCU.bigWig bigWig (plus strand signal of unique reads) 78.7 MB
ENCFF277GEF.bigWig bigWig (plus strand signal of unique reads) 77.6 MB
ENCFF282EFK.bigWig bigWig (minus strand signal of unique reads) 76.8 MB
ENCFF287SPW.tar tar (differential splicing quantifications) 3.2 MB
ENCFF288ULW.bam bam (alignments) 4.0 GB
ENCFF306GEP.bigWig bigWig (plus strand signal of all reads) 89.2 MB
ENCFF314GQW.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF330USJ.tsv tsv (differential expression quantifications) 4.3 MB
ENCFF332CSR.bam bam (alignments) 3.9 GB
ENCFF336WBC.bigWig bigWig (minus strand signal of all reads) 84.3 MB
ENCFF350FHY.bigWig bigWig (minus strand signal of all reads) 76.2 MB
ENCFF359WKQ.bigWig bigWig (minus strand signal of unique reads) 71.9 MB
ENCFF391CZU.bam bam (alignments) 4.6 GB
ENCFF412UUO.bam bam (transcriptome alignments) 5.6 GB
ENCFF423TYM.bigWig bigWig (minus strand signal of unique reads) 76.4 MB
ENCFF439NFD.bigWig bigWig (plus strand signal of unique reads) 80.6 MB
ENCFF453FNZ.bigWig bigWig (plus strand signal of unique reads) 78.3 MB
ENCFF461WGF.tar tar (differential splicing quantifications) 15.5 MB
ENCFF480PIO.bigWig bigWig (minus strand signal of unique reads) 69.0 MB
ENCFF492XVP.bam bam (alignments) 4.7 GB
ENCFF506SBA.bigWig bigWig (minus strand signal of unique reads) 70.8 MB
ENCFF510SZH.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF524VED.bigWig bigWig (minus strand signal of unique reads) 72.2 MB
ENCFF526OXK.bigWig bigWig (plus strand signal of unique reads) 73.8 MB
ENCFF530EKH.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF561OLU.bigWig bigWig (plus strand signal of all reads) 86.4 MB
ENCFF567NWU.bigWig bigWig (minus strand signal of all reads) 85.0 MB
ENCFF571IXL.tsv tsv (gene quantifications) 9.4 MB
ENCFF571JUL.bigWig bigWig (minus strand signal of all reads) 81.5 MB
ENCFF575IHC.bigWig bigWig (plus strand signal of all reads) 82.9 MB
ENCFF579RCI.bigWig bigWig (minus strand signal of all reads) 78.8 MB
ENCFF582FTG.bigWig bigWig (plus strand signal of unique reads) 80.6 MB
ENCFF589KQV.tar tar (differential splicing quantifications) 3.9 MB
ENCFF609OPV.bigWig bigWig (minus strand signal of unique reads) 76.8 MB
ENCFF612NMY.bigWig bigWig (plus strand signal of unique reads) 71.0 MB
ENCFF616QMF.bigWig bigWig (plus strand signal of all reads) 89.1 MB
ENCFF668JUE.bigWig bigWig (plus strand signal of unique reads) 76.5 MB
ENCFF692XDQ.bigWig bigWig (plus strand signal of unique reads) 81.6 MB
ENCFF733APJ.bigWig bigWig (minus strand signal of all reads) 84.8 MB
ENCFF737SWG.tsv tsv (transcript quantifications) 29.8 MB
ENCFF754WLQ.bigWig bigWig (plus strand signal of all reads) 85.5 MB
ENCFF757ONS.bigWig bigWig (minus strand signal of unique reads) 79.7 MB
ENCFF757QVH.tsv tsv (transcript quantifications) 25.3 MB
ENCFF788TCC.fastq fastq (reads) 2.6 GB
ENCFF797QCU.bam bam (transcriptome alignments) 5.7 GB
ENCFF805EVG.tsv tsv (transcript quantifications) 24.9 MB
ENCFF811DGY.tsv tsv (transcript quantifications) 25.3 MB
ENCFF812QXY.bigWig bigWig (minus strand signal of all reads) 77.4 MB
ENCFF829XSY.bam bam (transcriptome alignments) 5.6 GB
ENCFF845KOR.bigWig bigWig (minus strand signal of unique reads) 78.7 MB
ENCFF859TJM.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF873OYY.bigWig bigWig (plus strand signal of all reads) 81.3 MB
ENCFF886BRT.bigWig bigWig (minus strand signal of all reads) 88.1 MB
ENCFF890CGY.bigWig bigWig (minus strand signal of unique reads) 75.7 MB
ENCFF913CAO.tsv tsv (gene quantifications) 9.1 MB
ENCFF918BEM.bam bam (alignments) 3.9 GB
ENCFF927AVO.tsv tsv (gene quantifications) 10.4 MB
ENCFF979AOI.bam bam (alignments) 4.0 GB
ENCFF981FOF.bam bam (alignments) 4.0 GB
ENCFF982VIJ.tsv tsv (transcript quantifications) 27.3 MB
ENCFF990DOJ.bigWig bigWig (minus strand signal of all reads) 74.4 MB
ENCFF995JDI.bam bam (alignments) 4.8 GB
ENCSR155BMF ENCSR · via encode_api

RNA-seq on HepG2 cells treated with an shRNA knockdown against HNRNPL. (HNRNPL-BGHLV23)

Homo sapiens

92 data files
FileTypeSize
ENCFF009IFK.bigWig bigWig (minus strand signal of all reads) 77.1 MB
ENCFF045MWC.bigWig bigWig (minus strand signal of unique reads) 77.3 MB
ENCFF049UVQ.tsv tsv (gene quantifications) 9.1 MB
ENCFF066TKS.bigWig bigWig (plus strand signal of all reads) 75.7 MB
ENCFF068JJL.tar tar (differential splicing quantifications) 4.5 MB
ENCFF069YYR.tsv tsv (differential expression quantifications) 2.0 MB
ENCFF130JJV.tsv tsv (transcript quantifications) 29.8 MB
ENCFF137TOH.tsv tsv (transcript quantifications) 27.4 MB
ENCFF140RYZ.bigWig bigWig (plus strand signal of all reads) 69.8 MB
ENCFF176RXJ.bam bam (alignments) 5.3 GB
ENCFF190NWK.bam bam (alignments) 4.5 GB
ENCFF191LQK.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF193VDM.bigWig bigWig (minus strand signal of all reads) 76.2 MB
ENCFF194GAP.bigWig bigWig (plus strand signal of all reads) 88.0 MB
ENCFF194QXV.bam bam (transcriptome alignments) 6.6 GB
ENCFF227PRE.bigWig bigWig (plus strand signal of all reads) 87.4 MB
ENCFF227TJN.bigWig bigWig (plus strand signal of unique reads) 65.9 MB
ENCFF242QPW.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF260VHP.bigWig bigWig (minus strand signal of unique reads) 71.5 MB
ENCFF265NVV.bam bam (transcriptome alignments) 6.6 GB
ENCFF285JOP.bigWig bigWig (plus strand signal of unique reads) 69.3 MB
ENCFF289NQH.tsv tsv (differential expression quantifications) 1.8 MB
ENCFF304RAJ.bigWig bigWig (plus strand signal of unique reads) 79.2 MB
ENCFF311MCE.bigWig bigWig (minus strand signal of unique reads) 68.4 MB
ENCFF322HMN.bigWig bigWig (plus strand signal of all reads) 84.1 MB
ENCFF325HIS.bigWig bigWig (minus strand signal of all reads) 72.5 MB
ENCFF329QSJ.bigWig bigWig (plus strand signal of unique reads) 73.1 MB
ENCFF334GMW.bam bam (transcriptome alignments) 6.0 GB
ENCFF337UTG.bigWig bigWig (plus strand signal of all reads) 78.3 MB
ENCFF338ANO.bigWig bigWig (plus strand signal of unique reads) 78.9 MB
ENCFF340AKU.tsv tsv (gene quantifications) 10.4 MB
ENCFF344KYC.bam bam (transcriptome alignments) 5.9 GB
ENCFF344UKQ.bigWig bigWig (minus strand signal of all reads) 86.8 MB
ENCFF346SLP.tsv tsv (gene quantifications) 9.1 MB
ENCFF366LSX.bigWig bigWig (plus strand signal of unique reads) 75.7 MB
ENCFF384ABD.bam bam (alignments) 4.3 GB
ENCFF405XRN.bigWig bigWig (minus strand signal of all reads) 83.0 MB
ENCFF411KSV.tsv tsv (transcript quantifications) 24.9 MB
ENCFF418LJM.bigWig bigWig (plus strand signal of all reads) 72.7 MB
ENCFF432MWW.bigWig bigWig (minus strand signal of unique reads) 73.6 MB
ENCFF432RUB.bigWig bigWig (minus strand signal of all reads) 86.8 MB
ENCFF434KUR.bigWig bigWig (plus strand signal of unique reads) 79.9 MB
ENCFF435MPP.bigWig bigWig (plus strand signal of unique reads) 75.7 MB
ENCFF466WJI.bigWig bigWig (minus strand signal of unique reads) 64.2 MB
ENCFF496UJL.tsv tsv (differential expression quantifications) 4.5 MB
ENCFF501OQN.bigWig bigWig (minus strand signal of unique reads) 71.0 MB
ENCFF501YCC.bigWig bigWig (minus strand signal of all reads) 68.6 MB
ENCFF536UGZ.bam bam (alignments) 5.0 GB
ENCFF541OWI.bigWig bigWig (minus strand signal of unique reads) 78.2 MB
ENCFF547ICZ.bigWig bigWig (minus strand signal of all reads) 83.0 MB
ENCFF564LDG.tsv tsv (gene quantifications) 9.5 MB
ENCFF566OUA.bam bam (transcriptome alignments) 6.6 GB
ENCFF573NTO.bigWig bigWig (minus strand signal of all reads) 81.7 MB
ENCFF575GSA.bigWig bigWig (plus strand signal of unique reads) 67.7 MB
ENCFF584VSS.tar tar (differential splicing quantifications) 3.5 MB
ENCFF588NMI.bigWig bigWig (plus strand signal of all reads) 73.6 MB
ENCFF590PLY.bigWig bigWig (minus strand signal of unique reads) 74.2 MB
ENCFF594CHT.bigWig bigWig (plus strand signal of all reads) 82.6 MB
ENCFF599XTE.bigWig bigWig (minus strand signal of unique reads) 77.6 MB
ENCFF606LSS.bigWig bigWig (plus strand signal of all reads) 77.2 MB
ENCFF625KAT.bam bam (transcriptome alignments) 7.3 GB
ENCFF625UUR.bigWig bigWig (minus strand signal of unique reads) 74.2 MB
ENCFF654WLJ.bigWig bigWig (plus strand signal of all reads) 84.1 MB
ENCFF658OHX.tsv tsv (transcript quantifications) 27.4 MB
ENCFF667VIP.bigWig bigWig (plus strand signal of unique reads) 72.4 MB
ENCFF684WFJ.bigWig bigWig (minus strand signal of unique reads) 66.4 MB
ENCFF695NFM.bigWig bigWig (minus strand signal of unique reads) 67.8 MB
ENCFF695OUO.fastq fastq (reads) 2.9 GB
ENCFF743ALR.tsv tsv (gene quantifications) 10.4 MB
ENCFF749XEN.bam bam (alignments) 4.7 GB
ENCFF758ALR.fastq fastq (reads) 2.7 GB
ENCFF764HLG.bam bam (alignments) 5.5 GB
ENCFF774ZME.bam bam (alignments) 4.7 GB
ENCFF778FNW.bam bam (alignments) 4.3 GB
ENCFF812CZU.bam bam (alignments) 5.5 GB
ENCFF819ROL.tar tar (differential splicing quantifications) 17.2 MB
ENCFF831EHK.tsv tsv (transcript quantifications) 25.3 MB
ENCFF832SDV.tsv tsv (transcript quantifications) 24.9 MB
ENCFF858SAI.bigWig bigWig (minus strand signal of all reads) 71.8 MB
ENCFF869LKX.bam bam (alignments) 5.4 GB
ENCFF878XZX.bigWig bigWig (minus strand signal of all reads) 74.4 MB
ENCFF888EAZ.fastq fastq (reads) 3.0 GB
ENCFF895WRH.bam bam (alignments) 4.7 GB
ENCFF910YPC.tsv tsv (gene quantifications) 9.4 MB
ENCFF914KZQ.tsv tsv (transcript quantifications) 29.8 MB
ENCFF915OWV.bam bam (alignments) 5.3 GB
ENCFF917YYJ.fastq fastq (reads) 2.6 GB
ENCFF918RIR.bigWig bigWig (plus strand signal of all reads) 88.0 MB
ENCFF934JYR.bigWig bigWig (plus strand signal of unique reads) 75.1 MB
ENCFF936MEI.bigWig bigWig (minus strand signal of all reads) 86.3 MB
ENCFF998LQJ.bigWig bigWig (plus strand signal of unique reads) 70.1 MB
ENCFF999DHA.tsv tsv (transcript quantifications) 25.3 MB
ENCSR534YOI ENCSR · via encode_api

eCLIP experiment on K562 against PRPF8

Homo sapiens

35 data files
FileTypeSize
ENCFF057BFH.bigBed bigBed (peaks) 4.2 MB
ENCFF093BES.bigWig bigWig (plus strand signal of unique reads) 19.4 MB
ENCFF160MVU.bigWig bigWig (plus strand signal of unique reads) 23.5 MB
ENCFF167VAS.bed bed (peaks) 1.9 MB
ENCFF250KIT.bigWig bigWig (plus strand signal of unique reads) 23.0 MB
ENCFF282CXV.bigBed bigBed (peaks) 1.7 MB
ENCFF314CHT.bigBed bigBed (peaks) 2.6 MB
ENCFF319LAK.bam bam (alignments) 420.7 MB
ENCFF341LOO.bed bed (peaks) 254.0 KB
ENCFF343JQN.fastq fastq (reads) 420.1 MB
ENCFF378HIP.fastq fastq (reads) 292.8 MB
ENCFF494DYW.bigWig bigWig (plus strand signal of unique reads) 19.6 MB
ENCFF548ACI.bigBed bigBed (peaks) 3.6 MB
ENCFF554UWY.bigBed bigBed (peaks) 3.5 MB
ENCFF558FAR.bam bam (alignments) 421.6 MB
ENCFF576DYQ.bed bed (peaks) 1.8 MB
ENCFF582YLB.bigWig bigWig (minus strand signal of unique reads) 22.8 MB
ENCFF587GNE.bed bed (peaks) 802.1 KB
ENCFF635OAZ.bed bed (peaks) 929.4 KB
ENCFF687LRO.bed bed (peaks) 2.2 MB
ENCFF689MJF.bam bam (alignments) 341.1 MB
ENCFF704TRB.bigBed bigBed (peaks) 568.9 KB
ENCFF727HJV.bigBed bigBed (peaks) 1.9 MB
ENCFF792GSE.fastq fastq (reads) 375.5 MB
ENCFF823AQM.bigBed bigBed (peaks) 777.9 KB
ENCFF837HED.bed bed (peaks) 302.6 KB
ENCFF850LZX.bigWig bigWig (minus strand signal of unique reads) 18.8 MB
ENCFF858UKE.bed bed (peaks) 227.3 KB
ENCFF937DLK.bigWig bigWig (minus strand signal of unique reads) 22.3 MB
ENCFF949RPR.bed bed (peaks) 220.5 KB
ENCFF975SKP.fastq fastq (reads) 335.8 MB
ENCFF984QHA.bigWig bigWig (minus strand signal of unique reads) 19.0 MB
ENCFF987VDX.bam bam (alignments) 344.6 MB
ENCFF991SQO.bigBed bigBed (peaks) 4.2 MB
ENCFF996MYF.bed bed (peaks) 2.3 MB
ENCSR466JPT ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) pulldown experiment against TARDBP

14 data files
FileTypeSize
ENCFF022PDN.tsv tsv (enrichment) 41.0 KB
ENCFF023PUC.fastq fastq (reads) 401.5 MB
ENCFF044GED.fastq fastq (reads) 435.0 MB
ENCFF059ZUY.tsv tsv (library fraction) 63.8 KB
ENCFF147IXH.fastq fastq (reads) 1.0 GB
ENCFF363GNB.tsv tsv (library fraction) 1.1 MB
ENCFF422VRS.tsv tsv (library fraction) 15.1 KB
ENCFF484TAR.tsv tsv (enrichment) 168.0 KB
ENCFF552GCD.fastq fastq (reads) 371.1 MB
ENCFF652LRF.tsv tsv (library fraction) 265.4 KB
ENCFF769CCM.tsv tsv (enrichment) 688.0 KB
ENCFF864BPI.fastq fastq (reads) 388.5 MB
ENCFF878HMC.bed bed (peaks) 630.4 KB
ENCFF979SDN.tsv tsv (enrichment) 10.0 KB
ENCSR007XKL ENCSR · via encode_api

shRNA knockdown against NFX1 in K562 cells followed by RNA-seq. (NFX1 BGKLV13)

Homo sapiens

92 data files
FileTypeSize
ENCFF011XII.bam bam (alignments) 4.2 GB
ENCFF012KVZ.bigWig bigWig (minus strand signal of all reads) 74.7 MB
ENCFF058EVL.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF069PQN.bigWig bigWig (plus strand signal of all reads) 76.7 MB
ENCFF075JKS.bigWig bigWig (plus strand signal of unique reads) 75.7 MB
ENCFF080QTD.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF094HTC.bigWig bigWig (plus strand signal of all reads) 80.7 MB
ENCFF103NVQ.tsv tsv (gene quantifications) 10.4 MB
ENCFF113RWM.bam bam (transcriptome alignments) 5.5 GB
ENCFF131EVG.bigWig bigWig (plus strand signal of all reads) 83.8 MB
ENCFF148NRV.bigWig bigWig (minus strand signal of unique reads) 69.8 MB
ENCFF151PKL.tsv tsv (gene quantifications) 9.1 MB
ENCFF153ACO.bigWig bigWig (minus strand signal of unique reads) 72.8 MB
ENCFF177ZLR.tsv tsv (transcript quantifications) 25.3 MB
ENCFF178LDN.bigWig bigWig (minus strand signal of all reads) 79.2 MB
ENCFF181JJD.bigWig bigWig (minus strand signal of unique reads) 69.6 MB
ENCFF183WAY.bigWig bigWig (minus strand signal of unique reads) 73.5 MB
ENCFF201UKQ.tsv tsv (transcript quantifications) 29.8 MB
ENCFF210JIA.bigWig bigWig (plus strand signal of all reads) 88.1 MB
ENCFF233DMF.bigWig bigWig (plus strand signal of all reads) 88.2 MB
ENCFF236IKS.bam bam (alignments) 4.4 GB
ENCFF252PKA.bigWig bigWig (plus strand signal of unique reads) 79.7 MB
ENCFF253WCI.bigWig bigWig (minus strand signal of unique reads) 77.0 MB
ENCFF257UDD.bigWig bigWig (minus strand signal of all reads) 78.6 MB
ENCFF258XDV.bigWig bigWig (minus strand signal of all reads) 70.8 MB
ENCFF259UWC.tsv tsv (transcript quantifications) 24.9 MB
ENCFF262RSX.bam bam (alignments) 4.1 GB
ENCFF267TVU.bigWig bigWig (plus strand signal of unique reads) 75.8 MB
ENCFF292KFZ.tsv tsv (gene quantifications) 10.4 MB
ENCFF308XTY.bigWig bigWig (minus strand signal of unique reads) 65.6 MB
ENCFF311ATR.tsv tsv (transcript quantifications) 24.9 MB
ENCFF319VPJ.tsv tsv (differential expression quantifications) 4.1 MB
ENCFF331PYA.bam bam (alignments) 4.4 GB
ENCFF337WCS.bigWig bigWig (minus strand signal of all reads) 87.1 MB
ENCFF388WAH.bam bam (transcriptome alignments) 5.2 GB
ENCFF395MUW.bigWig bigWig (plus strand signal of all reads) 88.2 MB
ENCFF424WSS.tar tar (differential splicing quantifications) 3.5 MB
ENCFF427YZN.bigWig bigWig (plus strand signal of all reads) 72.1 MB
ENCFF428VEJ.bigWig bigWig (plus strand signal of all reads) 76.1 MB
ENCFF441FVT.bigWig bigWig (minus strand signal of all reads) 86.9 MB
ENCFF466OZP.bam bam (alignments) 3.6 GB
ENCFF472AIM.fastq fastq (reads) 2.3 GB
ENCFF473DGB.bigWig bigWig (plus strand signal of unique reads) 74.7 MB
ENCFF474FYG.bigWig bigWig (plus strand signal of unique reads) 75.3 MB
ENCFF481XYP.bigWig bigWig (plus strand signal of all reads) 83.5 MB
ENCFF488SRL.bigWig bigWig (minus strand signal of unique reads) 73.0 MB
ENCFF530QUV.bigWig bigWig (plus strand signal of all reads) 76.0 MB
ENCFF540JIC.bam bam (transcriptome alignments) 4.9 GB
ENCFF580PBY.bam bam (transcriptome alignments) 4.9 GB
ENCFF600ZGP.bigWig bigWig (plus strand signal of unique reads) 78.8 MB
ENCFF612MIY.bigWig bigWig (minus strand signal of all reads) 82.7 MB
ENCFF614ZZK.bigWig bigWig (minus strand signal of unique reads) 77.8 MB
ENCFF623JIX.bigWig bigWig (plus strand signal of unique reads) 71.4 MB
ENCFF626RSF.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF631JLQ.tsv tsv (gene quantifications) 9.1 MB
ENCFF631VKJ.fastq fastq (reads) 2.3 GB
ENCFF648EVR.tsv tsv (transcript quantifications) 27.3 MB
ENCFF654BAV.bigWig bigWig (plus strand signal of unique reads) 71.5 MB
ENCFF678SJQ.tar tar (differential splicing quantifications) 4.1 MB
ENCFF678WXO.bam bam (alignments) 3.7 GB
ENCFF682RPR.bam bam (alignments) 3.4 GB
ENCFF694HCM.bam bam (alignments) 4.1 GB
ENCFF700NEQ.bam bam (alignments) 3.6 GB
ENCFF718JDT.tsv tsv (transcript quantifications) 27.3 MB
ENCFF739IRP.bigWig bigWig (plus strand signal of all reads) 79.6 MB
ENCFF761VAG.bigWig bigWig (minus strand signal of all reads) 75.3 MB
ENCFF771ZCL.bam bam (transcriptome alignments) 4.6 GB
ENCFF778UJW.bigWig bigWig (minus strand signal of unique reads) 73.7 MB
ENCFF795ICV.bigWig bigWig (minus strand signal of unique reads) 68.8 MB
ENCFF807QMP.tsv tsv (gene quantifications) 9.4 MB
ENCFF808NFD.tsv tsv (gene quantifications) 9.4 MB
ENCFF831GBK.bigWig bigWig (minus strand signal of all reads) 75.1 MB
ENCFF842TQK.bigWig bigWig (minus strand signal of all reads) 82.7 MB
ENCFF854HIC.tsv tsv (transcript quantifications) 25.3 MB
ENCFF857RNR.bam bam (alignments) 4.0 GB
ENCFF863ETM.tsv tsv (differential expression quantifications) 5.5 MB
ENCFF878JKR.bam bam (alignments) 3.4 GB
ENCFF882YYR.tar tar (differential splicing quantifications) 15.1 MB
ENCFF909BCE.bigWig bigWig (minus strand signal of all reads) 87.1 MB
ENCFF909VGL.bam bam (transcriptome alignments) 4.6 GB
ENCFF916RUU.bigWig bigWig (plus strand signal of all reads) 83.8 MB
ENCFF934MFY.fastq fastq (reads) 2.1 GB
ENCFF939JKA.bigWig bigWig (minus strand signal of unique reads) 73.9 MB
ENCFF949THY.bigWig bigWig (plus strand signal of unique reads) 67.4 MB
ENCFF951PNO.bigWig bigWig (minus strand signal of unique reads) 76.8 MB
ENCFF959WQA.bigWig bigWig (minus strand signal of all reads) 82.3 MB
ENCFF961IDM.bigWig bigWig (plus strand signal of unique reads) 78.8 MB
ENCFF976PKZ.fastq fastq (reads) 2.2 GB
ENCFF983XWV.bam bam (alignments) 3.4 GB
ENCFF986PDH.bigWig bigWig (plus strand signal of unique reads) 74.7 MB
ENCFF987MUC.bigWig bigWig (plus strand signal of unique reads) 70.7 MB
ENCFF999JNQ.tsv tsv (transcript quantifications) 29.8 MB
ENCSR509LIV ENCSR · via encode_api

RNA-seq on HepG2 cells treated with an shRNA knockdown against EIF4G1. (EIF4G1-BGHLV23)

Homo sapiens

92 data files
FileTypeSize
ENCFF013RLV.bigWig bigWig (plus strand signal of all reads) 87.1 MB
ENCFF018UCO.tsv tsv (transcript quantifications) 27.3 MB
ENCFF022VGL.bam bam (transcriptome alignments) 8.0 GB
ENCFF049UZV.tsv tsv (gene quantifications) 9.1 MB
ENCFF054BNU.bigWig bigWig (minus strand signal of all reads) 84.2 MB
ENCFF079IEF.bigWig bigWig (minus strand signal of all reads) 82.3 MB
ENCFF082MNQ.bigWig bigWig (minus strand signal of all reads) 74.9 MB
ENCFF085PQO.bigWig bigWig (plus strand signal of all reads) 85.6 MB
ENCFF087OCD.bigWig bigWig (minus strand signal of all reads) 72.9 MB
ENCFF114FNI.bigWig bigWig (minus strand signal of all reads) 82.7 MB
ENCFF114JGU.bigWig bigWig (minus strand signal of unique reads) 78.4 MB
ENCFF118DRU.fastq fastq (reads) 3.5 GB
ENCFF161WRK.bigWig bigWig (plus strand signal of unique reads) 70.8 MB
ENCFF184HGB.bigWig bigWig (plus strand signal of unique reads) 75.8 MB
ENCFF187UGO.bigWig bigWig (minus strand signal of all reads) 85.5 MB
ENCFF200LOY.bigWig bigWig (plus strand signal of all reads) 95.6 MB
ENCFF222LUJ.tsv tsv (gene quantifications) 10.4 MB
ENCFF223FCO.bigWig bigWig (plus strand signal of unique reads) 86.1 MB
ENCFF235PMP.bigWig bigWig (minus strand signal of all reads) 82.2 MB
ENCFF249JJK.bigWig bigWig (plus strand signal of unique reads) 78.6 MB
ENCFF261HNH.tar tar (differential splicing quantifications) 3.5 MB
ENCFF280JND.bam bam (alignments) 5.6 GB
ENCFF291STD.bam bam (transcriptome alignments) 7.5 GB
ENCFF312AAE.bam bam (transcriptome alignments) 8.9 GB
ENCFF316RST.tsv tsv (transcript quantifications) 29.8 MB
ENCFF322LRQ.bigWig bigWig (minus strand signal of all reads) 72.5 MB
ENCFF325NYI.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF344ZZY.tsv tsv (gene quantifications) 9.5 MB
ENCFF362RCW.bigWig bigWig (plus strand signal of unique reads) 85.8 MB
ENCFF386LFR.bigWig bigWig (minus strand signal of unique reads) 84.1 MB
ENCFF387REX.bam bam (alignments) 5.6 GB
ENCFF394LCM.bam bam (alignments) 4.7 GB
ENCFF445RNI.fastq fastq (reads) 2.9 GB
ENCFF447GOE.bam bam (transcriptome alignments) 8.0 GB
ENCFF450ZSH.bam bam (alignments) 6.6 GB
ENCFF455SUW.bam bam (alignments) 4.6 GB
ENCFF457UXJ.fastq fastq (reads) 3.4 GB
ENCFF473VKL.bigWig bigWig (plus strand signal of all reads) 83.6 MB
ENCFF498IDI.bigWig bigWig (plus strand signal of all reads) 83.5 MB
ENCFF510RLU.tsv tsv (differential expression quantifications) 1.8 MB
ENCFF516HSZ.bigWig bigWig (minus strand signal of unique reads) 74.4 MB
ENCFF524JFW.bam bam (alignments) 5.5 GB
ENCFF535NBS.bigWig bigWig (plus strand signal of unique reads) 69.0 MB
ENCFF539VZC.bam bam (alignments) 5.6 GB
ENCFF551QOJ.bigWig bigWig (plus strand signal of all reads) 84.4 MB
ENCFF563CZX.bam bam (alignments) 6.3 GB
ENCFF566CYI.bigWig bigWig (minus strand signal of unique reads) 69.4 MB
ENCFF581XUU.bigWig bigWig (minus strand signal of all reads) 94.2 MB
ENCFF583SRT.bigWig bigWig (plus strand signal of unique reads) 76.2 MB
ENCFF587GVF.bigWig bigWig (minus strand signal of unique reads) 69.1 MB
ENCFF593JBL.tsv tsv (differential expression quantifications) 4.4 MB
ENCFF596NAC.bam bam (alignments) 6.6 GB
ENCFF607DUR.tar tar (differential splicing quantifications) 17.5 MB
ENCFF608ZCV.bigWig bigWig (minus strand signal of unique reads) 79.0 MB
ENCFF620HLP.bigWig bigWig (plus strand signal of all reads) 95.1 MB
ENCFF628RJX.tsv tsv (transcript quantifications) 27.4 MB
ENCFF648QEW.bam bam (alignments) 4.6 GB
ENCFF656FWO.bigWig bigWig (minus strand signal of unique reads) 83.7 MB
ENCFF659YTK.bigWig bigWig (minus strand signal of unique reads) 76.4 MB
ENCFF660DKI.bigWig bigWig (minus strand signal of all reads) 93.7 MB
ENCFF692EUM.bam bam (alignments) 5.5 GB
ENCFF694JTJ.bigWig bigWig (minus strand signal of unique reads) 67.2 MB
ENCFF710IDP.tsv tsv (transcript quantifications) 25.3 MB
ENCFF711PLY.bigWig bigWig (minus strand signal of all reads) 81.6 MB
ENCFF712WQP.bigWig bigWig (plus strand signal of unique reads) 80.2 MB
ENCFF717VOB.tar tar (differential splicing quantifications) 4.5 MB
ENCFF718DKV.bigWig bigWig (minus strand signal of all reads) 92.5 MB
ENCFF725XKP.bigWig bigWig (minus strand signal of unique reads) 83.7 MB
ENCFF756IDB.bam bam (alignments) 5.4 GB
ENCFF765AAX.bigWig bigWig (plus strand signal of all reads) 74.1 MB
ENCFF777DBD.bigWig bigWig (plus strand signal of unique reads) 76.1 MB
ENCFF781XDG.bigWig bigWig (plus strand signal of all reads) 76.3 MB
ENCFF786ESM.tsv tsv (transcript quantifications) 25.3 MB
ENCFF788ILO.tsv tsv (gene quantifications) 9.5 MB
ENCFF802REY.bigWig bigWig (plus strand signal of unique reads) 71.0 MB
ENCFF807APU.tsv tsv (transcript quantifications) 29.8 MB
ENCFF821NNG.bigWig bigWig (plus strand signal of unique reads) 81.1 MB
ENCFF822GZO.tsv tsv (gene quantifications) 10.4 MB
ENCFF824SYF.bigWig bigWig (plus strand signal of all reads) 74.0 MB
ENCFF834GEK.tsv tsv (transcript quantifications) 24.9 MB
ENCFF853TCL.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF854SOV.fastq fastq (reads) 3.0 GB
ENCFF860LVA.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF885TOP.bigWig bigWig (plus strand signal of all reads) 93.8 MB
ENCFF899HVO.bam bam (transcriptome alignments) 6.7 GB
ENCFF906BWF.bigWig bigWig (plus strand signal of unique reads) 85.7 MB
ENCFF922TWU.tsv tsv (transcript quantifications) 24.9 MB
ENCFF955TXI.tsv tsv (gene quantifications) 9.1 MB
ENCFF956MNL.bigWig bigWig (minus strand signal of unique reads) 74.0 MB
ENCFF968XFC.bigWig bigWig (plus strand signal of all reads) 82.7 MB
ENCFF987SNF.bigWig bigWig (minus strand signal of unique reads) 74.4 MB
ENCFF995LZN.bam bam (transcriptome alignments) 6.7 GB
ENCSR910ECL ENCSR · via encode_api

RNA-seq on HepG2 cells treated with an shRNA knockdown against UTP3. (UTP3_BGHLV33)

Homo sapiens

92 data files
FileTypeSize
ENCFF007JYH.bam bam (transcriptome alignments) 5.0 GB
ENCFF013EPP.bigWig bigWig (plus strand signal of unique reads) 84.7 MB
ENCFF023KMO.bam bam (alignments) 4.4 GB
ENCFF025NVV.bigWig bigWig (minus strand signal of all reads) 81.8 MB
ENCFF032TEF.bigWig bigWig (minus strand signal of all reads) 81.9 MB
ENCFF033NFI.bigWig bigWig (minus strand signal of all reads) 72.1 MB
ENCFF062MWZ.bigWig bigWig (minus strand signal of unique reads) 73.4 MB
ENCFF063BVP.bigWig bigWig (plus strand signal of all reads) 74.9 MB
ENCFF071UHE.tsv tsv (gene quantifications) 9.1 MB
ENCFF071YYS.bigWig bigWig (plus strand signal of all reads) 83.1 MB
ENCFF074PBU.bigWig bigWig (minus strand signal of all reads) 84.0 MB
ENCFF096OOJ.bigWig bigWig (minus strand signal of unique reads) 73.7 MB
ENCFF099LIC.tsv tsv (gene quantifications) 9.5 MB
ENCFF109OEF.bam bam (alignments) 4.4 GB
ENCFF111PXA.bigWig bigWig (plus strand signal of all reads) 83.7 MB
ENCFF130RTK.tsv tsv (gene quantifications) 9.4 MB
ENCFF131RNR.bam bam (alignments) 4.3 GB
ENCFF148CGE.bam bam (alignments) 5.6 GB
ENCFF150YLV.bigWig bigWig (plus strand signal of all reads) 73.8 MB
ENCFF152BGF.tsv tsv (transcript quantifications) 29.8 MB
ENCFF159REC.bigWig bigWig (plus strand signal of unique reads) 84.9 MB
ENCFF162XBO.tsv tsv (gene quantifications) 9.1 MB
ENCFF172KIT.bigWig bigWig (plus strand signal of unique reads) 70.3 MB
ENCFF184PSH.bigWig bigWig (plus strand signal of all reads) 83.7 MB
ENCFF185DNB.tar tar (differential splicing quantifications) 4.0 MB
ENCFF201GLT.bigWig bigWig (plus strand signal of unique reads) 69.6 MB
ENCFF206DSQ.bigWig bigWig (plus strand signal of unique reads) 75.9 MB
ENCFF210ODS.fastq fastq (reads) 2.4 GB
ENCFF221LRY.bigWig bigWig (plus strand signal of unique reads) 76.1 MB
ENCFF222IRG.bigWig bigWig (minus strand signal of all reads) 73.1 MB
ENCFF222UTG.bigWig bigWig (plus strand signal of unique reads) 75.3 MB
ENCFF230KPZ.bigWig bigWig (minus strand signal of all reads) 81.0 MB
ENCFF238FGG.bigWig bigWig (plus strand signal of all reads) 86.0 MB
ENCFF243LAL.bigWig bigWig (minus strand signal of all reads) 68.4 MB
ENCFF244AYB.bigWig bigWig (plus strand signal of all reads) 81.9 MB
ENCFF246BTB.tsv tsv (transcript quantifications) 27.4 MB
ENCFF257FUP.fastq fastq (reads) 3.1 GB
ENCFF266HTC.bigWig bigWig (minus strand signal of all reads) 80.1 MB
ENCFF268XFI.bam bam (transcriptome alignments) 5.7 GB
ENCFF291RDI.bigWig bigWig (minus strand signal of unique reads) 68.1 MB
ENCFF296TZH.tsv tsv (differential expression quantifications) 3.0 MB
ENCFF299LOA.bigWig bigWig (minus strand signal of all reads) 92.2 MB
ENCFF306UZI.bam bam (alignments) 4.6 GB
ENCFF318MDE.bam bam (alignments) 4.5 GB
ENCFF327WYP.tsv tsv (transcript quantifications) 24.9 MB
ENCFF335SPI.bigWig bigWig (plus strand signal of unique reads) 85.1 MB
ENCFF353RFL.tsv tsv (gene quantifications) 10.4 MB
ENCFF359MMB.tsv tsv (transcript quantifications) 27.4 MB
ENCFF414CZS.bam bam (alignments) 5.6 GB
ENCFF441ETD.bigWig bigWig (minus strand signal of unique reads) 82.4 MB
ENCFF451CSL.bigWig bigWig (plus strand signal of all reads) 95.6 MB
ENCFF458JKW.bam bam (transcriptome alignments) 5.0 GB
ENCFF463KMM.bigWig bigWig (minus strand signal of all reads) 81.6 MB
ENCFF482NRS.bigWig bigWig (plus strand signal of unique reads) 74.9 MB
ENCFF486AYZ.bam bam (alignments) 3.6 GB
ENCFF489NBA.tsv tsv (transcript quantifications) 25.3 MB
ENCFF557IAP.bigWig bigWig (minus strand signal of all reads) 93.5 MB
ENCFF560PGO.bigWig bigWig (plus strand signal of all reads) 82.9 MB
ENCFF565OLO.bigWig bigWig (plus strand signal of all reads) 95.6 MB
ENCFF573INR.bigWig bigWig (minus strand signal of unique reads) 82.2 MB
ENCFF577LWV.bigWig bigWig (plus strand signal of unique reads) 80.0 MB
ENCFF579XSR.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF593ODP.tsv tsv (transcript quantifications) 24.9 MB
ENCFF607WOM.tsv tsv (gene quantifications) 10.4 MB
ENCFF619OST.tsv tsv (differential expression quantifications) 4.4 MB
ENCFF622ENH.bam bam (alignments) 3.6 GB
ENCFF628GIB.tsv tsv (transcript quantifications) 29.8 MB
ENCFF629AHW.bam bam (transcriptome alignments) 6.6 GB
ENCFF634DWK.fastq fastq (reads) 3.0 GB
ENCFF639ZIB.bigWig bigWig (minus strand signal of unique reads) 67.5 MB
ENCFF658OWA.bigWig bigWig (minus strand signal of unique reads) 63.5 MB
ENCFF666HFX.bam bam (transcriptome alignments) 6.6 GB
ENCFF675FOA.bigWig bigWig (plus strand signal of unique reads) 78.6 MB
ENCFF697DKY.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF735LOI.bigWig bigWig (minus strand signal of unique reads) 76.2 MB
ENCFF759FAR.bigWig bigWig (minus strand signal of unique reads) 72.9 MB
ENCFF788BZG.bigWig bigWig (minus strand signal of all reads) 93.4 MB
ENCFF788JBY.bam bam (alignments) 4.5 GB
ENCFF797BVD.tsv tsv (differential expression quantifications) 2.0 MB
ENCFF811ZZC.bigWig bigWig (plus strand signal of all reads) 70.0 MB
ENCFF813XIG.fastq fastq (reads) 2.3 GB
ENCFF832AKI.bam bam (transcriptome alignments) 7.5 GB
ENCFF845LAG.bigWig bigWig (plus strand signal of unique reads) 65.7 MB
ENCFF866XEW.tsv tsv (transcript quantifications) 25.3 MB
ENCFF870NLM.tar tar (differential splicing quantifications) 16.4 MB
ENCFF876DBS.bam bam (alignments) 5.4 GB
ENCFF885AEY.bigWig bigWig (minus strand signal of unique reads) 77.5 MB
ENCFF914DER.bigWig bigWig (minus strand signal of unique reads) 82.0 MB
ENCFF974SCD.tar tar (differential splicing quantifications) 4.9 MB
ENCFF984EHR.bigWig bigWig (plus strand signal of all reads) 94.0 MB
ENCFF985TAG.bam bam (alignments) 3.5 GB
ENCFF990RIB.bigWig bigWig (minus strand signal of unique reads) 72.5 MB
ENCSR673FLQ ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) pulldown experiment against PCBP2

14 data files
FileTypeSize
ENCFF020KTF.fastq fastq (reads) 399.6 MB
ENCFF024ODR.tsv tsv (enrichment) 168.1 KB
ENCFF053JNP.fastq fastq (reads) 370.4 MB
ENCFF058WPN.fastq fastq (reads) 476.3 MB
ENCFF203BAO.tsv tsv (library fraction) 265.2 KB
ENCFF282GMF.tsv tsv (enrichment) 688.1 KB
ENCFF691SCA.fastq fastq (reads) 658.4 MB
ENCFF761GIK.tsv tsv (enrichment) 41.0 KB
ENCFF798SMM.fastq fastq (reads) 359.1 MB
ENCFF877XOK.tsv tsv (library fraction) 15.3 KB
ENCFF884AGK.tsv tsv (library fraction) 1.1 MB
ENCFF908FAV.tsv tsv (enrichment) 10.0 KB
ENCFF986WIW.tsv tsv (library fraction) 64.1 KB
ENCFF999HRP.bed bed (peaks) 689.0 KB
ENCSR600HIW ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) pulldown experiment against EIF4G2

17 data files
FileTypeSize
ENCFF047JVW.tsv tsv (enrichment) 168.0 KB
ENCFF048OJX.tsv tsv (library fraction) 1.1 MB
ENCFF083UGT.tsv tsv (enrichment) 41.0 KB
ENCFF125ULL.tsv tsv (library fraction) 15.1 KB
ENCFF196LGM.tsv tsv (enrichment) 238.0 B
ENCFF310LNQ.tsv tsv (enrichment) 688.0 KB
ENCFF388SBU.tsv tsv (library fraction) 265.8 KB
ENCFF396JVK.bed bed (peaks) 284.3 KB
ENCFF409BQS.tsv tsv (enrichment) 10.0 KB
ENCFF483PKV.fastq fastq (reads) 163.6 MB
ENCFF519MEJ.tsv tsv (enrichment) 109.0 B
ENCFF531KCO.fastq fastq (reads) 282.6 MB
ENCFF582ZAS.tsv tsv (library fraction) 63.5 KB
ENCFF613BOZ.fastq fastq (reads) 236.8 MB
ENCFF747XEL.fastq fastq (reads) 186.4 MB
ENCFF749OEM.tsv tsv (enrichment) 109.0 B
ENCFF798BTI.fastq fastq (reads) 379.2 MB
ENCSR769GES ENCSR · via encode_api

RNA-seq on HepG2 cells treated with an shRNA knockdown against HNRNPA2B1. (HNRNPA2B1-BGHLV23)

Homo sapiens

92 data files
FileTypeSize
ENCFF016OTD.bigWig bigWig (minus strand signal of unique reads) 74.5 MB
ENCFF026GMT.bigWig bigWig (plus strand signal of unique reads) 76.1 MB
ENCFF045LCC.bigWig bigWig (plus strand signal of unique reads) 70.3 MB
ENCFF057AYJ.bigWig bigWig (plus strand signal of unique reads) 70.3 MB
ENCFF110AGX.bam bam (alignments) 4.9 GB
ENCFF115BYJ.tsv tsv (transcript quantifications) 27.3 MB
ENCFF119DRE.tsv tsv (transcript quantifications) 24.9 MB
ENCFF128AMZ.tsv tsv (gene quantifications) 9.5 MB
ENCFF147WZO.bigWig bigWig (plus strand signal of all reads) 77.5 MB
ENCFF157MUE.bigWig bigWig (minus strand signal of unique reads) 64.2 MB
ENCFF158ZFC.tsv tsv (gene quantifications) 10.4 MB
ENCFF163SEM.bigWig bigWig (plus strand signal of all reads) 78.2 MB
ENCFF169KWA.bam bam (alignments) 4.0 GB
ENCFF169PRD.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF172ITR.bigWig bigWig (minus strand signal of unique reads) 68.7 MB
ENCFF184NXH.bigWig bigWig (plus strand signal of all reads) 84.9 MB
ENCFF192NQE.bigWig bigWig (minus strand signal of all reads) 77.1 MB
ENCFF193NTE.bigWig bigWig (minus strand signal of unique reads) 68.0 MB
ENCFF194KCD.bigWig bigWig (plus strand signal of unique reads) 65.7 MB
ENCFF203WZI.tsv tsv (differential expression quantifications) 1.8 MB
ENCFF205QEB.bigWig bigWig (plus strand signal of all reads) 84.9 MB
ENCFF206QPT.fastq fastq (reads) 2.9 GB
ENCFF212JKI.bigWig bigWig (minus strand signal of all reads) 73.0 MB
ENCFF212PRL.bigWig bigWig (minus strand signal of all reads) 71.9 MB
ENCFF221OTK.bigWig bigWig (minus strand signal of all reads) 76.4 MB
ENCFF225UBO.bigWig bigWig (minus strand signal of unique reads) 74.5 MB
ENCFF251DCQ.bigWig bigWig (minus strand signal of unique reads) 75.3 MB
ENCFF257RIM.bigWig bigWig (plus strand signal of all reads) 78.3 MB
ENCFF265HMF.bigWig bigWig (minus strand signal of all reads) 77.1 MB
ENCFF267SMC.fastq fastq (reads) 2.6 GB
ENCFF273EDC.bam bam (alignments) 4.0 GB
ENCFF287SMZ.bam bam (transcriptome alignments) 6.3 GB
ENCFF308LAK.bigWig bigWig (plus strand signal of unique reads) 68.7 MB
ENCFF354QON.tsv tsv (differential expression quantifications) 4.3 MB
ENCFF357UIE.fastq fastq (reads) 3.0 GB
ENCFF393JUK.tsv tsv (transcript quantifications) 24.9 MB
ENCFF395IRO.bigWig bigWig (minus strand signal of unique reads) 68.4 MB
ENCFF396VIB.tsv tsv (transcript quantifications) 29.8 MB
ENCFF403JHV.tsv tsv (transcript quantifications) 25.3 MB
ENCFF407HFP.bigWig bigWig (minus strand signal of all reads) 83.8 MB
ENCFF455ZYS.bam bam (transcriptome alignments) 7.4 GB
ENCFF468ZMY.bigWig bigWig (minus strand signal of all reads) 83.8 MB
ENCFF472OJH.tar tar (differential splicing quantifications) 3.3 MB
ENCFF475POK.bam bam (transcriptome alignments) 6.7 GB
ENCFF481AYV.bam bam (transcriptome alignments) 5.7 GB
ENCFF490QWI.bam bam (alignments) 4.8 GB
ENCFF493OVD.bigWig bigWig (plus strand signal of unique reads) 76.1 MB
ENCFF502CNK.tsv tsv (gene quantifications) 10.4 MB
ENCFF522VFD.tsv tsv (transcript quantifications) 25.3 MB
ENCFF535RTL.bigWig bigWig (plus strand signal of all reads) 68.1 MB
ENCFF540PAV.bam bam (alignments) 5.7 GB
ENCFF551OEX.bam bam (alignments) 4.1 GB
ENCFF573JCX.bam bam (transcriptome alignments) 5.7 GB
ENCFF575VSD.bam bam (alignments) 4.7 GB
ENCFF597HTV.bigWig bigWig (minus strand signal of all reads) 68.3 MB
ENCFF606DES.bam bam (alignments) 4.6 GB
ENCFF610XWU.tsv tsv (transcript quantifications) 27.3 MB
ENCFF617VIM.bigWig bigWig (minus strand signal of unique reads) 66.9 MB
ENCFF619VLO.bigWig bigWig (minus strand signal of unique reads) 62.7 MB
ENCFF636GMC.bigWig bigWig (minus strand signal of unique reads) 68.2 MB
ENCFF656AMM.bigWig bigWig (minus strand signal of all reads) 83.1 MB
ENCFF678DMT.bigWig bigWig (minus strand signal of all reads) 74.5 MB
ENCFF700CRJ.bigWig bigWig (minus strand signal of unique reads) 64.6 MB
ENCFF702ZHU.bigWig bigWig (plus strand signal of unique reads) 69.8 MB
ENCFF724GAQ.bigWig bigWig (plus strand signal of all reads) 70.7 MB
ENCFF726NRM.bigWig bigWig (plus strand signal of all reads) 74.0 MB
ENCFF729WMQ.bigWig bigWig (plus strand signal of unique reads) 66.0 MB
ENCFF735FFJ.tsv tsv (differential expression quantifications) 5.8 MB
ENCFF746VNK.bigWig bigWig (minus strand signal of unique reads) 68.6 MB
ENCFF754KCM.fastq fastq (reads) 2.5 GB
ENCFF759STG.bigWig bigWig (plus strand signal of all reads) 69.4 MB
ENCFF763MVE.bigWig bigWig (minus strand signal of all reads) 69.5 MB
ENCFF766EKQ.tsv tsv (gene quantifications) 9.1 MB
ENCFF769GYQ.bigWig bigWig (plus strand signal of all reads) 73.1 MB
ENCFF780BMF.tsv tsv (transcript quantifications) 29.8 MB
ENCFF796FAG.bigWig bigWig (plus strand signal of unique reads) 64.3 MB
ENCFF802JQM.bigWig bigWig (plus strand signal of unique reads) 69.6 MB
ENCFF821NIA.bam bam (transcriptome alignments) 6.7 GB
ENCFF825FMC.bam bam (alignments) 4.7 GB
ENCFF834CXW.tsv tsv (differential expression quantifications) 2.0 MB
ENCFF864CNY.bigWig bigWig (plus strand signal of unique reads) 69.8 MB
ENCFF877QVS.bam bam (alignments) 5.7 GB
ENCFF883QEO.bam bam (alignments) 4.8 GB
ENCFF916MHO.tsv tsv (gene quantifications) 9.1 MB
ENCFF924UOQ.tsv tsv (gene quantifications) 9.4 MB
ENCFF931JPX.bigWig bigWig (plus strand signal of all reads) 75.6 MB
ENCFF931RTE.tar tar (differential splicing quantifications) 17.1 MB
ENCFF937ZNP.bigWig bigWig (plus strand signal of all reads) 84.1 MB
ENCFF956RVB.bigWig bigWig (plus strand signal of unique reads) 77.0 MB
ENCFF961GZL.tar tar (differential splicing quantifications) 4.2 MB
ENCFF984GXX.bigWig bigWig (minus strand signal of all reads) 66.7 MB
ENCFF997UFK.bam bam (alignments) 5.5 GB
ENCSR527DXF ENCSR · via encode_api

eCLIP experiment on HepG2 against EFTUD2

Homo sapiens

36 data files
FileTypeSize
ENCFF017IRY.bed bed (peaks) 177.4 KB
ENCFF021EVP.bigBed bigBed (peaks) 3.1 MB
ENCFF035LGQ.bigWig bigWig (minus strand signal of unique reads) 9.0 MB
ENCFF036SRS.bigWig bigWig (plus strand signal of unique reads) 9.5 MB
ENCFF053SAV.bigBed bigBed (peaks) 778.3 KB
ENCFF061QCD.bam bam (alignments) 149.6 MB
ENCFF078BZO.bigBed bigBed (peaks) 1.7 MB
ENCFF087QRH.bigBed bigBed (peaks) 2.9 MB
ENCFF115BKF.bigWig bigWig (plus strand signal of unique reads) 9.1 MB
ENCFF128MQR.bed bed (peaks) 2.2 MB
ENCFF201YNC.bam bam (alignments) 445.0 MB
ENCFF206TXR.bigWig bigWig (minus strand signal of unique reads) 20.2 MB
ENCFF292PAL.bigBed bigBed (peaks) 1.9 MB
ENCFF327OME.bigBed bigBed (peaks) 4.3 MB
ENCFF347GOC.bed bed (peaks) 294.9 KB
ENCFF372RTG.bigBed bigBed (peaks) 752.7 KB
ENCFF377HAO.bed bed (peaks) 923.9 KB
ENCFF381UFF.bam bam (alignments) 158.5 MB
ENCFF441XUV.fastq fastq (reads) 673.6 MB
ENCFF454UOS.fastq fastq (reads) 702.6 MB
ENCFF459NZV.bigBed bigBed (peaks) 3.6 MB
ENCFF483AFJ.bigWig bigWig (plus strand signal of unique reads) 21.4 MB
ENCFF490GBA.fastq fastq (reads) 652.0 MB
ENCFF499JDZ.bam bam (alignments) 433.4 MB
ENCFF511ZTQ.bed bed (peaks) 2.2 MB
ENCFF519LOW.bigWig bigWig (plus strand signal of unique reads) 21.8 MB
ENCFF657AOS.bigWig bigWig (minus strand signal of unique reads) 8.7 MB
ENCFF714YXE.bed bed (peaks) 1.5 MB
ENCFF727KTZ.fastq fastq (reads) 720.9 MB
ENCFF741ZOS.bigWig bigWig (minus strand signal of unique reads) 20.6 MB
ENCFF765TII.bed bed (peaks) 984.3 KB
ENCFF796RMF.bed bed (peaks) 169.6 KB
ENCFF840QBW.bed bed (peaks) 352.8 KB
ENCFF857JEW.bigBed bigBed (peaks) 4.2 MB
ENCFF955RUR.bed bed (peaks) 1.5 MB
ENCFF958ZJB.bigBed bigBed (peaks) 3.0 MB
ENCSR438GZQ ENCSR · via encode_api

eCLIP experiment on K562 against KHSRP

Homo sapiens

35 data files
FileTypeSize
ENCFF014LLF.fastq fastq (reads) 654.4 MB
ENCFF031FMO.bed bed (peaks) 511.5 KB
ENCFF032LQU.bigBed bigBed (peaks) 8.1 MB
ENCFF034PXB.bigWig bigWig (plus strand signal of unique reads) 51.7 MB
ENCFF036ESC.bigBed bigBed (peaks) 1.9 MB
ENCFF060SFT.bigWig bigWig (minus strand signal of unique reads) 50.3 MB
ENCFF066PCT.bed bed (peaks) 352.1 KB
ENCFF087ZCZ.bed bed (peaks) 994.2 KB
ENCFF094QVM.bigWig bigWig (plus strand signal of unique reads) 52.5 MB
ENCFF118GAL.bed bed (peaks) 858.0 KB
ENCFF127WMZ.bed bed (peaks) 4.5 MB
ENCFF133EJA.bam bam (alignments) 1.1 GB
ENCFF146GUU.bigWig bigWig (minus strand signal of unique reads) 51.1 MB
ENCFF249OVY.bigBed bigBed (peaks) 7.9 MB
ENCFF329DFY.bigBed bigBed (peaks) 817.3 KB
ENCFF374XQF.bed bed (peaks) 4.7 MB
ENCFF393NCT.bigWig bigWig (minus strand signal of unique reads) 60.7 MB
ENCFF394THC.bam bam (alignments) 1.1 GB
ENCFF429OUS.bigBed bigBed (peaks) 724.0 KB
ENCFF498QZQ.bed bed (peaks) 4.5 MB
ENCFF512ZBC.bed bed (peaks) 301.1 KB
ENCFF531NDZ.bed bed (peaks) 4.7 MB
ENCFF538QCY.fastq fastq (reads) 676.9 MB
ENCFF634TPL.bigBed bigBed (peaks) 7.9 MB
ENCFF665BIZ.bam bam (alignments) 1.1 GB
ENCFF698TGL.bam bam (alignments) 1.0 GB
ENCFF708FTS.bigBed bigBed (peaks) 1.7 MB
ENCFF764CKI.bigWig bigWig (minus strand signal of unique reads) 61.4 MB
ENCFF768ZZP.bigBed bigBed (peaks) 8.2 MB
ENCFF860VTI.bigWig bigWig (plus strand signal of unique reads) 62.3 MB
ENCFF871BYW.bed bed (peaks) 501.9 KB
ENCFF900BFH.bigWig bigWig (plus strand signal of unique reads) 63.0 MB
ENCFF901KIG.fastq fastq (reads) 673.0 MB
ENCFF964QFZ.bigBed bigBed (peaks) 3.4 MB
ENCFF973MWU.fastq fastq (reads) 649.2 MB
ENCSR295XKC ENCSR · via encode_api

shRNA knockdown against GTF2F1 in HepG2 cells followed by RNA-seq. (GTF2F1 BGHLV14)

Homo sapiens

92 data files
FileTypeSize
ENCFF032JMI.bam bam (alignments) 4.8 GB
ENCFF053VFW.bigWig bigWig (minus strand signal of all reads) 79.8 MB
ENCFF093WMM.bigWig bigWig (minus strand signal of unique reads) 75.4 MB
ENCFF104UFT.bam bam (transcriptome alignments) 5.9 GB
ENCFF111XWD.bigWig bigWig (plus strand signal of unique reads) 74.1 MB
ENCFF128CST.bigWig bigWig (minus strand signal of unique reads) 75.4 MB
ENCFF134PBN.bigWig bigWig (minus strand signal of unique reads) 72.2 MB
ENCFF135DRE.bam bam (transcriptome alignments) 5.8 GB
ENCFF143IIQ.bigWig bigWig (minus strand signal of unique reads) 68.3 MB
ENCFF151GZU.bigWig bigWig (minus strand signal of unique reads) 68.0 MB
ENCFF171VAE.bam bam (alignments) 3.6 GB
ENCFF171WKT.bigWig bigWig (plus strand signal of all reads) 72.9 MB
ENCFF177ILT.tsv tsv (gene quantifications) 9.1 MB
ENCFF194FRE.bigWig bigWig (plus strand signal of unique reads) 70.1 MB
ENCFF202LIE.bigWig bigWig (minus strand signal of all reads) 79.8 MB
ENCFF205KOG.tsv tsv (transcript quantifications) 24.9 MB
ENCFF222PZJ.tsv tsv (gene quantifications) 10.4 MB
ENCFF230RRY.bigWig bigWig (plus strand signal of all reads) 72.1 MB
ENCFF241EAJ.bam bam (alignments) 4.0 GB
ENCFF243FSF.bam bam (transcriptome alignments) 6.5 GB
ENCFF258VWP.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF259WYZ.bigWig bigWig (plus strand signal of all reads) 80.5 MB
ENCFF260MKQ.tar tar (differential splicing quantifications) 3.6 MB
ENCFF284JTP.bigWig bigWig (plus strand signal of unique reads) 69.9 MB
ENCFF306ZKE.bigWig bigWig (minus strand signal of unique reads) 71.2 MB
ENCFF343HRT.bigWig bigWig (plus strand signal of unique reads) 72.7 MB
ENCFF345ONV.fastq fastq (reads) 2.5 GB
ENCFF350QWD.bigWig bigWig (minus strand signal of all reads) 79.3 MB
ENCFF357OIE.bigWig bigWig (minus strand signal of unique reads) 72.2 MB
ENCFF363JLM.tsv tsv (differential expression quantifications) 4.1 MB
ENCFF384TFV.bam bam (alignments) 3.7 GB
ENCFF389VQU.bigWig bigWig (minus strand signal of all reads) 70.5 MB
ENCFF391DRT.bam bam (alignments) 4.6 GB
ENCFF394WCB.bam bam (alignments) 4.2 GB
ENCFF401ZXD.fastq fastq (reads) 2.4 GB
ENCFF418YPW.bigWig bigWig (minus strand signal of unique reads) 72.2 MB
ENCFF421MQZ.bigWig bigWig (plus strand signal of unique reads) 74.1 MB
ENCFF433PNU.bigWig bigWig (minus strand signal of all reads) 83.8 MB
ENCFF435OHM.bigWig bigWig (plus strand signal of all reads) 85.3 MB
ENCFF471YUW.bam bam (alignments) 4.4 GB
ENCFF473LVD.bigWig bigWig (plus strand signal of all reads) 84.5 MB
ENCFF505MAX.bigWig bigWig (minus strand signal of all reads) 83.1 MB
ENCFF511CWD.bigWig bigWig (minus strand signal of unique reads) 74.9 MB
ENCFF512PVC.bigWig bigWig (plus strand signal of unique reads) 77.4 MB
ENCFF518YMD.bigWig bigWig (plus strand signal of unique reads) 74.1 MB
ENCFF518ZOL.fastq fastq (reads) 2.6 GB
ENCFF530ESA.tsv tsv (transcript quantifications) 29.8 MB
ENCFF533FZX.bam bam (transcriptome alignments) 5.8 GB
ENCFF537LUA.tsv tsv (gene quantifications) 10.4 MB
ENCFF554NSP.bam bam (alignments) 4.1 GB
ENCFF570WZG.bam bam (alignments) 3.7 GB
ENCFF588YEQ.tar tar (differential splicing quantifications) 15.5 MB
ENCFF648JGZ.bigWig bigWig (plus strand signal of unique reads) 77.0 MB
ENCFF654MTN.bam bam (alignments) 3.9 GB
ENCFF655BZE.bigWig bigWig (plus strand signal of all reads) 74.8 MB
ENCFF670UJI.bam bam (alignments) 4.4 GB
ENCFF674HAM.tsv tsv (transcript quantifications) 25.3 MB
ENCFF674TTJ.bigWig bigWig (minus strand signal of all reads) 83.8 MB
ENCFF682TMX.tsv tsv (transcript quantifications) 24.9 MB
ENCFF683WXN.bigWig bigWig (plus strand signal of all reads) 85.3 MB
ENCFF688AQH.bigWig bigWig (plus strand signal of unique reads) 67.5 MB
ENCFF699AYQ.tsv tsv (differential expression quantifications) 2.0 MB
ENCFF706VMJ.tsv tsv (transcript quantifications) 25.3 MB
ENCFF729FFA.bigWig bigWig (plus strand signal of unique reads) 77.4 MB
ENCFF747DLD.bigWig bigWig (minus strand signal of unique reads) 66.9 MB
ENCFF749GIW.bigWig bigWig (plus strand signal of all reads) 81.3 MB
ENCFF763QMS.bigWig bigWig (plus strand signal of unique reads) 68.9 MB
ENCFF788QVC.bigWig bigWig (minus strand signal of unique reads) 65.6 MB
ENCFF808OPD.tsv tsv (gene quantifications) 9.4 MB
ENCFF812UWB.bigWig bigWig (minus strand signal of all reads) 71.3 MB
ENCFF823TOR.bigWig bigWig (plus strand signal of unique reads) 73.0 MB
ENCFF830JKC.bigWig bigWig (minus strand signal of all reads) 73.3 MB
ENCFF835VFL.tsv tsv (differential expression quantifications) 1.8 MB
ENCFF850EIP.bam bam (alignments) 4.8 GB
ENCFF867ACD.tsv tsv (transcript quantifications) 29.8 MB
ENCFF870WHW.bam bam (transcriptome alignments) 5.2 GB
ENCFF874DXF.bigWig bigWig (plus strand signal of all reads) 78.4 MB
ENCFF876UPA.tsv tsv (transcript quantifications) 27.3 MB
ENCFF878TVA.tar tar (differential splicing quantifications) 3.1 MB
ENCFF882JQH.fastq fastq (reads) 2.3 GB
ENCFF902TLV.tsv tsv (gene quantifications) 9.1 MB
ENCFF914EJD.tsv tsv (gene quantifications) 9.4 MB
ENCFF914TNC.bigWig bigWig (minus strand signal of unique reads) 70.7 MB
ENCFF916DZD.bam bam (transcriptome alignments) 5.3 GB
ENCFF917RVR.bigWig bigWig (minus strand signal of all reads) 71.9 MB
ENCFF923ZIV.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF926LAC.bigWig bigWig (plus strand signal of all reads) 81.3 MB
ENCFF930CMV.tsv tsv (transcript quantifications) 27.3 MB
ENCFF935BNK.bigWig bigWig (plus strand signal of all reads) 76.3 MB
ENCFF940VQB.bigWig bigWig (minus strand signal of all reads) 74.9 MB
ENCFF948NLA.bigWig bigWig (minus strand signal of all reads) 76.8 MB
ENCFF987NSM.bigWig bigWig (plus strand signal of all reads) 73.3 MB
ENCSR987NYS ENCSR · via encode_api

eCLIP experiment on HepG2 against FAM120A

Homo sapiens

36 data files
FileTypeSize
ENCFF037CYW.bigBed bigBed (peaks) 4.1 MB
ENCFF037FOV.bigWig bigWig (minus strand signal of unique reads) 22.8 MB
ENCFF105IAX.bam bam (alignments) 460.9 MB
ENCFF208ZMI.bed bed (peaks) 188.2 KB
ENCFF211KDO.bigBed bigBed (peaks) 3.2 MB
ENCFF287ADK.bed bed (peaks) 1.9 MB
ENCFF319ICK.fastq fastq (reads) 427.7 MB
ENCFF354DCE.bigWig bigWig (minus strand signal of unique reads) 19.6 MB
ENCFF354PCR.bigWig bigWig (minus strand signal of unique reads) 22.8 MB
ENCFF384CEF.bigBed bigBed (peaks) 1.8 MB
ENCFF389LEX.bed bed (peaks) 1.9 MB
ENCFF438UEK.bed bed (peaks) 387.7 KB
ENCFF445AUC.bigWig bigWig (plus strand signal of unique reads) 23.9 MB
ENCFF511SXK.bed bed (peaks) 2.2 MB
ENCFF537VIU.bigWig bigWig (plus strand signal of unique reads) 20.5 MB
ENCFF545IVO.fastq fastq (reads) 316.9 MB
ENCFF559TMX.bed bed (peaks) 351.7 KB
ENCFF560JGB.bigBed bigBed (peaks) 3.5 MB
ENCFF599VUS.bam bam (alignments) 410.4 MB
ENCFF624JEI.bigWig bigWig (plus strand signal of unique reads) 20.4 MB
ENCFF636LMQ.bed bed (peaks) 942.1 KB
ENCFF649CQS.bigBed bigBed (peaks) 876.2 KB
ENCFF658NFU.bigBed bigBed (peaks) 4.1 MB
ENCFF670BUW.bigBed bigBed (peaks) 851.5 KB
ENCFF687SEY.fastq fastq (reads) 394.4 MB
ENCFF689MCG.bigBed bigBed (peaks) 3.3 MB
ENCFF704TQZ.bam bam (alignments) 408.4 MB
ENCFF741FRL.bed bed (peaks) 184.7 KB
ENCFF769ZSG.bed bed (peaks) 871.3 KB
ENCFF781UYD.bigWig bigWig (plus strand signal of unique reads) 23.8 MB
ENCFF786BCU.bed bed (peaks) 2.2 MB
ENCFF815UFF.fastq fastq (reads) 341.0 MB
ENCFF869VWO.bigBed bigBed (peaks) 1.8 MB
ENCFF887RRI.bigBed bigBed (peaks) 3.6 MB
ENCFF889YGM.bam bam (alignments) 458.9 MB
ENCFF947QMJ.bigWig bigWig (minus strand signal of unique reads) 19.6 MB
ENCSR887FHF ENCSR · via encode_api

eCLIP experiment on K562 against FASTKD2

Homo sapiens

35 data files
FileTypeSize
ENCFF025IFV.bigBed bigBed (peaks) 1.1 MB
ENCFF042LBO.bigWig bigWig (plus strand signal of unique reads) 5.5 MB
ENCFF045FDJ.bigBed bigBed (peaks) 1.1 MB
ENCFF111XRA.fastq fastq (reads) 360.8 MB
ENCFF135ZJA.bigBed bigBed (peaks) 348.4 KB
ENCFF158VSM.bam bam (alignments) 242.8 MB
ENCFF178EKO.bigBed bigBed (peaks) 837.3 KB
ENCFF223JNG.bam bam (alignments) 148.0 MB
ENCFF225HCD.fastq fastq (reads) 494.6 MB
ENCFF232TCE.bigWig bigWig (minus strand signal of unique reads) 5.2 MB
ENCFF267DFP.bed bed (peaks) 604.9 KB
ENCFF267HNN.bigBed bigBed (peaks) 1.9 MB
ENCFF278SLD.bam bam (alignments) 238.4 MB
ENCFF280KMG.bigBed bigBed (peaks) 2.0 MB
ENCFF331RRQ.bed bed (peaks) 398.1 KB
ENCFF357ABQ.bed bed (peaks) 14.4 KB
ENCFF423SOR.bed bed (peaks) 14.5 KB
ENCFF505SKP.bigWig bigWig (plus strand signal of unique reads) 12.7 MB
ENCFF546CND.bed bed (peaks) 189.6 KB
ENCFF548WUW.bigBed bigBed (peaks) 2.0 MB
ENCFF567KSY.fastq fastq (reads) 501.4 MB
ENCFF649KGI.bigWig bigWig (plus strand signal of unique reads) 12.8 MB
ENCFF661SDU.bigWig bigWig (plus strand signal of unique reads) 5.5 MB
ENCFF718VRE.bed bed (peaks) 1.2 MB
ENCFF724UQB.fastq fastq (reads) 360.5 MB
ENCFF769KHB.bam bam (alignments) 145.4 MB
ENCFF782MAV.bigBed bigBed (peaks) 472.9 KB
ENCFF813HHP.bed bed (peaks) 534.2 KB
ENCFF827UEI.bigBed bigBed (peaks) 1.0 MB
ENCFF840SDN.bigWig bigWig (minus strand signal of unique reads) 12.2 MB
ENCFF885BWV.bed bed (peaks) 609.9 KB
ENCFF898XKM.bigWig bigWig (minus strand signal of unique reads) 5.3 MB
ENCFF943JBN.bed bed (peaks) 1.2 MB
ENCFF965AJN.bigWig bigWig (minus strand signal of unique reads) 12.1 MB
ENCFF996EIN.bed bed (peaks) 152.9 KB
ENCSR736AAG ENCSR · via encode_api

eCLIP experiment on K562 against GTF2F1

Homo sapiens

36 data files
FileTypeSize
ENCFF004VCQ.bigBed bigBed (peaks) 2.8 MB
ENCFF036RER.bigWig bigWig (plus strand signal of unique reads) 13.5 MB
ENCFF044HRW.fastq fastq (reads) 341.6 MB
ENCFF104PYZ.bigBed bigBed (peaks) 1.9 MB
ENCFF157LVS.bigBed bigBed (peaks) 889.8 KB
ENCFF189QBX.bam bam (alignments) 212.4 MB
ENCFF189QNM.bigWig bigWig (minus strand signal of unique reads) 16.7 MB
ENCFF201QPI.bed bed (peaks) 168.9 KB
ENCFF215OMD.bam bam (alignments) 313.7 MB
ENCFF278ZCU.bed bed (peaks) 102.6 KB
ENCFF297XFG.bigWig bigWig (minus strand signal of unique reads) 13.0 MB
ENCFF371BCM.bigBed bigBed (peaks) 1.6 MB
ENCFF372THP.fastq fastq (reads) 381.8 MB
ENCFF379YWH.bed bed (peaks) 200.6 KB
ENCFF381DKU.bigBed bigBed (peaks) 2.9 MB
ENCFF410PTY.bed bed (peaks) 439.8 KB
ENCFF445JRX.bed bed (peaks) 102.4 KB
ENCFF457EAG.bigBed bigBed (peaks) 1.6 MB
ENCFF475LKG.bigBed bigBed (peaks) 561.8 KB
ENCFF500JSM.bed bed (peaks) 532.3 KB
ENCFF520MEC.fastq fastq (reads) 394.0 MB
ENCFF624FSB.bigWig bigWig (plus strand signal of unique reads) 13.5 MB
ENCFF634ATL.fastq fastq (reads) 424.3 MB
ENCFF699OHP.bigWig bigWig (minus strand signal of unique reads) 13.0 MB
ENCFF710NXQ.bed bed (peaks) 965.5 KB
ENCFF739CHZ.bed bed (peaks) 1.4 MB
ENCFF784AYX.bigWig bigWig (plus strand signal of unique reads) 17.5 MB
ENCFF864GYL.bam bam (alignments) 312.7 MB
ENCFF879QBD.bigBed bigBed (peaks) 437.8 KB
ENCFF913GBH.bed bed (peaks) 1.4 MB
ENCFF951JCN.bigBed bigBed (peaks) 1.2 MB
ENCFF958URO.bigWig bigWig (plus strand signal of unique reads) 17.4 MB
ENCFF962KBK.bigWig bigWig (minus strand signal of unique reads) 16.7 MB
ENCFF968DUU.bed bed (peaks) 962.2 KB
ENCFF983DGC.bigBed bigBed (peaks) 1.7 MB
ENCFF985HWL.bam bam (alignments) 211.6 MB
ENCSR200DKE ENCSR · via encode_api

eCLIP experiment on K562 against MTPAP

Homo sapiens

35 data files
FileTypeSize
ENCFF055BJX.bigWig bigWig (minus strand signal of unique reads) 21.1 MB
ENCFF078WOB.bigBed bigBed (peaks) 1.6 MB
ENCFF096BLA.bam bam (alignments) 411.3 MB
ENCFF106NME.bigWig bigWig (plus strand signal of unique reads) 21.6 MB
ENCFF166IJL.bigBed bigBed (peaks) 4.0 MB
ENCFF169EUQ.bam bam (alignments) 536.7 MB
ENCFF169NFE.fastq fastq (reads) 1.0 GB
ENCFF229ESR.bigBed bigBed (peaks) 2.7 MB
ENCFF266NFK.bed bed (peaks) 2.0 MB
ENCFF273AWX.bed bed (peaks) 266.6 KB
ENCFF300ZUU.bigBed bigBed (peaks) 4.6 MB
ENCFF333GSE.bigBed bigBed (peaks) 4.6 MB
ENCFF333UPO.bigWig bigWig (plus strand signal of unique reads) 25.6 MB
ENCFF334ULI.bed bed (peaks) 227.7 KB
ENCFF362LLE.bigWig bigWig (minus strand signal of unique reads) 25.1 MB
ENCFF386BEJ.fastq fastq (reads) 621.5 MB
ENCFF428LUE.bigBed bigBed (peaks) 679.1 KB
ENCFF436FUS.bed bed (peaks) 2.4 MB
ENCFF448TUI.bed bed (peaks) 2.0 MB
ENCFF467ZPC.bed bed (peaks) 845.3 KB
ENCFF534XFQ.bigBed bigBed (peaks) 4.0 MB
ENCFF546ZFM.bed bed (peaks) 21.2 KB
ENCFF569EHE.fastq fastq (reads) 609.8 MB
ENCFF577IRX.bigWig bigWig (minus strand signal of unique reads) 20.7 MB
ENCFF608DJN.bigWig bigWig (plus strand signal of unique reads) 26.2 MB
ENCFF732HBQ.bam bam (alignments) 519.7 MB
ENCFF779VXW.bigWig bigWig (minus strand signal of unique reads) 24.6 MB
ENCFF837YNN.bed bed (peaks) 746.8 KB
ENCFF883KCN.bed bed (peaks) 23.0 KB
ENCFF891WPR.bigBed bigBed (peaks) 510.6 KB
ENCFF929HPV.bigWig bigWig (plus strand signal of unique reads) 22.1 MB
ENCFF962AUM.fastq fastq (reads) 1.0 GB
ENCFF984DXU.bed bed (peaks) 2.4 MB
ENCFF986XOF.bigBed bigBed (peaks) 1.7 MB
ENCFF998TQA.bam bam (alignments) 424.7 MB
ENCSR861GYE ENCSR · via encode_api

eCLIP experiment on HepG2 against Lin28B

Homo sapiens

36 data files
FileTypeSize
ENCFF011FOO.bigWig bigWig (minus strand signal of unique reads) 7.4 MB
ENCFF080RIV.bigBed bigBed (peaks) 3.6 MB
ENCFF246BGL.bed bed (peaks) 702.8 KB
ENCFF270ONN.bed bed (peaks) 235.5 KB
ENCFF284RSI.bam bam (alignments) 152.2 MB
ENCFF291ZHD.bigWig bigWig (plus strand signal of unique reads) 7.5 MB
ENCFF316QQL.bigBed bigBed (peaks) 2.0 MB
ENCFF323FTX.bigBed bigBed (peaks) 771.0 KB
ENCFF341XMP.bed bed (peaks) 86.6 KB
ENCFF364ZHG.bed bed (peaks) 375.8 KB
ENCFF381VVY.bed bed (peaks) 715.3 KB
ENCFF451AQL.bed bed (peaks) 88.3 KB
ENCFF457EXU.bigBed bigBed (peaks) 2.0 MB
ENCFF459WIT.fastq fastq (reads) 297.1 MB
ENCFF476USO.bigWig bigWig (plus strand signal of unique reads) 7.4 MB
ENCFF515HHT.bigBed bigBed (peaks) 1.0 MB
ENCFF606QUL.bigBed bigBed (peaks) 2.1 MB
ENCFF612EYL.bigWig bigWig (minus strand signal of unique reads) 13.8 MB
ENCFF661GMQ.bigWig bigWig (minus strand signal of unique reads) 14.3 MB
ENCFF727NEF.bigBed bigBed (peaks) 1.3 MB
ENCFF756VXR.bam bam (alignments) 261.0 MB
ENCFF763NGW.bam bam (alignments) 272.9 MB
ENCFF771INC.bigBed bigBed (peaks) 554.8 KB
ENCFF780ZPW.bigWig bigWig (minus strand signal of unique reads) 7.3 MB
ENCFF794YIP.fastq fastq (reads) 203.7 MB
ENCFF838WUR.bigBed bigBed (peaks) 1.3 MB
ENCFF880XJZ.bed bed (peaks) 549.6 KB
ENCFF894MMI.bed bed (peaks) 900.0 KB
ENCFF902IPB.bigWig bigWig (plus strand signal of unique reads) 14.5 MB
ENCFF905RXQ.bigWig bigWig (plus strand signal of unique reads) 14.1 MB
ENCFF909VPB.bed bed (peaks) 1.2 MB
ENCFF916HAS.fastq fastq (reads) 284.2 MB
ENCFF917QVW.fastq fastq (reads) 217.3 MB
ENCFF925HAH.bam bam (alignments) 157.3 MB
ENCFF976KYV.bed bed (peaks) 1.2 MB
ENCFF996PHJ.bigBed bigBed (peaks) 1.9 MB
ENCSR805SRN ENCSR · via encode_api

eCLIP experiment on HepG2 against LARP4

Homo sapiens

35 data files
FileTypeSize
ENCFF080EMQ.bam bam (alignments) 490.7 MB
ENCFF098TDG.bigWig bigWig (minus strand signal of unique reads) 22.6 MB
ENCFF130RAQ.bed bed (peaks) 2.1 MB
ENCFF143CAC.bed bed (peaks) 848.2 KB
ENCFF162UWK.bigWig bigWig (plus strand signal of unique reads) 22.1 MB
ENCFF163HLQ.fastq fastq (reads) 553.0 MB
ENCFF202RTW.bam bam (alignments) 467.6 MB
ENCFF203QHV.bigBed bigBed (peaks) 3.1 MB
ENCFF205BHB.bigWig bigWig (minus strand signal of unique reads) 22.9 MB
ENCFF256CCS.bigWig bigWig (minus strand signal of unique reads) 21.6 MB
ENCFF259KVP.bam bam (alignments) 470.8 MB
ENCFF263BIJ.bed bed (peaks) 131.7 KB
ENCFF267JLV.bigBed bigBed (peaks) 4.1 MB
ENCFF276CTM.fastq fastq (reads) 598.1 MB
ENCFF279AYO.bigWig bigWig (plus strand signal of unique reads) 23.5 MB
ENCFF284OHP.bam bam (alignments) 499.9 MB
ENCFF288SGB.bed bed (peaks) 2.2 MB
ENCFF328SKZ.bigBed bigBed (peaks) 1.7 MB
ENCFF362EMN.fastq fastq (reads) 512.3 MB
ENCFF365UUW.fastq fastq (reads) 552.4 MB
ENCFF384HVB.bigWig bigWig (plus strand signal of unique reads) 22.8 MB
ENCFF449XCL.bigBed bigBed (peaks) 1.7 MB
ENCFF519RGA.bed bed (peaks) 2.1 MB
ENCFF534JCV.bed bed (peaks) 126.0 KB
ENCFF540HIX.bed bed (peaks) 2.1 MB
ENCFF594OWE.bigBed bigBed (peaks) 790.9 KB
ENCFF672BIX.bigWig bigWig (minus strand signal of unique reads) 22.1 MB
ENCFF696YTL.bigBed bigBed (peaks) 735.0 KB
ENCFF767VHD.bigBed bigBed (peaks) 4.1 MB
ENCFF777WFM.bigBed bigBed (peaks) 4.3 MB
ENCFF779LAQ.bed bed (peaks) 900.6 KB
ENCFF786NHD.bed bed (peaks) 316.2 KB
ENCFF806IJJ.bigBed bigBed (peaks) 4.1 MB
ENCFF955OZJ.bigWig bigWig (plus strand signal of unique reads) 23.4 MB
ENCFF988TLN.bed bed (peaks) 349.7 KB
ENCSR081JYH ENCSR · via encode_api

eCLIP experiment on K562 against NSUN2

Homo sapiens

34 data files
FileTypeSize
ENCFF036IYW.bed bed (peaks) 3.5 KB
ENCFF062YKQ.bed bed (peaks) 350.1 KB
ENCFF121GFV.bigBed bigBed (peaks) 610.8 KB
ENCFF149VKG.fastq fastq (reads) 541.9 MB
ENCFF233PRB.bed bed (peaks) 4.0 KB
ENCFF247XFK.bigWig bigWig (plus strand signal of unique reads) 5.4 MB
ENCFF257SMG.bed bed (peaks) 95.8 KB
ENCFF270MTA.bed bed (peaks) 358.0 KB
ENCFF308FEZ.bigWig bigWig (minus strand signal of unique reads) 5.1 MB
ENCFF349JHA.bigWig bigWig (minus strand signal of unique reads) 2.0 MB
ENCFF384EMH.bam bam (alignments) 148.9 MB
ENCFF408VMJ.bigBed bigBed (peaks) 226.2 KB
ENCFF479GVM.bam bam (alignments) 257.6 MB
ENCFF494YYE.bigWig bigWig (plus strand signal of unique reads) 5.3 MB
ENCFF496SLO.bed bed (peaks) 94.5 KB
ENCFF499MHW.bed bed (peaks) 208.2 KB
ENCFF533YVA.bigWig bigWig (plus strand signal of unique reads) 2.1 MB
ENCFF572GUG.bigBed bigBed (peaks) 620.8 KB
ENCFF606PVP.bed bed (peaks) 85.4 KB
ENCFF623LRO.bigBed bigBed (peaks) 438.1 KB
ENCFF638RGP.bed bed (peaks) 88.5 KB
ENCFF642IRY.bigBed bigBed (peaks) 139.7 KB
ENCFF676RKY.bigBed bigBed (peaks) 217.0 KB
ENCFF769VDH.bigWig bigWig (minus strand signal of unique reads) 5.2 MB
ENCFF771UIV.bigWig bigWig (minus strand signal of unique reads) 2.0 MB
ENCFF790KXQ.bam bam (alignments) 147.5 MB
ENCFF823PXI.bed bed (peaks) 53.5 KB
ENCFF839INY.fastq fastq (reads) 381.8 MB
ENCFF852NUQ.fastq fastq (reads) 344.4 MB
ENCFF862LPP.bam bam (alignments) 252.7 MB
ENCFF876KFA.bigBed bigBed (peaks) 207.6 KB
ENCFF877FZZ.fastq fastq (reads) 495.0 MB
ENCFF902LYL.bigWig bigWig (plus strand signal of unique reads) 2.0 MB
ENCFF945PHT.bigBed bigBed (peaks) 225.8 KB
ENCSR424JSU ENCSR · via encode_api

RNA-seq on HepG2 cells treated with an shRNA knockdown against UBE2L3. (UBE2L3-BGHLV23)

Homo sapiens

92 data files
FileTypeSize
ENCFF022GVT.bam bam (alignments) 4.4 GB
ENCFF067RXQ.tsv tsv (transcript quantifications) 27.2 MB
ENCFF076ABK.bigWig bigWig (minus strand signal of all reads) 63.8 MB
ENCFF079SBC.bigWig bigWig (plus strand signal of all reads) 91.1 MB
ENCFF086NQH.bam bam (transcriptome alignments) 8.0 GB
ENCFF091GIP.tsv tsv (transcript quantifications) 27.4 MB
ENCFF094VFU.bigWig bigWig (plus strand signal of unique reads) 84.7 MB
ENCFF095HGP.bigWig bigWig (plus strand signal of all reads) 89.4 MB
ENCFF101DVN.bam bam (alignments) 5.3 GB
ENCFF110WAU.tsv tsv (gene quantifications) 9.1 MB
ENCFF124ROU.bigWig bigWig (plus strand signal of all reads) 64.7 MB
ENCFF126TBP.bigWig bigWig (minus strand signal of all reads) 58.9 MB
ENCFF128KOK.tsv tsv (gene quantifications) 10.4 MB
ENCFF132LZD.bam bam (transcriptome alignments) 7.2 GB
ENCFF152BAN.bam bam (transcriptome alignments) 5.7 GB
ENCFF152DYU.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF152QCZ.tsv tsv (gene quantifications) 9.1 MB
ENCFF181VGX.fastq fastq (reads) 2.5 GB
ENCFF188BEU.bam bam (alignments) 6.2 GB
ENCFF191ATA.bigWig bigWig (minus strand signal of unique reads) 58.1 MB
ENCFF197VBU.bam bam (alignments) 3.8 GB
ENCFF200VHM.bigWig bigWig (plus strand signal of all reads) 98.2 MB
ENCFF201AAR.bigWig bigWig (plus strand signal of all reads) 56.7 MB
ENCFF217PVA.bigWig bigWig (plus strand signal of unique reads) 59.3 MB
ENCFF220FQF.bigWig bigWig (minus strand signal of all reads) 96.8 MB
ENCFF257YOQ.bigWig bigWig (plus strand signal of all reads) 65.1 MB
ENCFF261JVS.tsv tsv (transcript quantifications) 24.9 MB
ENCFF261PAT.bigWig bigWig (minus strand signal of all reads) 96.8 MB
ENCFF269BVM.bam bam (transcriptome alignments) 5.7 GB
ENCFF270MFD.bigWig bigWig (minus strand signal of unique reads) 54.9 MB
ENCFF298GMW.bam bam (transcriptome alignments) 7.1 GB
ENCFF304MJE.bam bam (alignments) 5.0 GB
ENCFF320AXJ.fastq fastq (reads) 3.1 GB
ENCFF321EQT.tar tar (differential splicing quantifications) 17.2 MB
ENCFF332BSJ.tsv tsv (transcript quantifications) 25.3 MB
ENCFF335DVA.bigWig bigWig (minus strand signal of unique reads) 87.6 MB
ENCFF340EDX.bigWig bigWig (plus strand signal of unique reads) 59.4 MB
ENCFF365QBG.bigWig bigWig (plus strand signal of unique reads) 59.4 MB
ENCFF383YIX.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF416BYL.bam bam (alignments) 5.8 GB
ENCFF417CLL.bam bam (alignments) 3.9 GB
ENCFF417UAZ.bam bam (alignments) 4.6 GB
ENCFF431EXH.bigWig bigWig (plus strand signal of all reads) 87.8 MB
ENCFF431FLT.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF442NSN.bam bam (alignments) 5.0 GB
ENCFF450LBE.tsv tsv (gene quantifications) 9.4 MB
ENCFF450VWY.tsv tsv (gene quantifications) 10.4 MB
ENCFF462RCB.bigWig bigWig (minus strand signal of unique reads) 82.6 MB
ENCFF502BHW.bigWig bigWig (minus strand signal of unique reads) 54.2 MB
ENCFF511UIR.bigWig bigWig (plus strand signal of unique reads) 88.8 MB
ENCFF514DVN.bigWig bigWig (plus strand signal of all reads) 58.7 MB
ENCFF535YDA.tar tar (differential splicing quantifications) 4.5 MB
ENCFF539DDC.bigWig bigWig (minus strand signal of all reads) 64.1 MB
ENCFF555RNQ.bigWig bigWig (minus strand signal of all reads) 89.4 MB
ENCFF555SGV.bigWig bigWig (minus strand signal of unique reads) 51.8 MB
ENCFF557YAS.bigWig bigWig (minus strand signal of unique reads) 82.1 MB
ENCFF562KRN.bam bam (alignments) 4.6 GB
ENCFF564CLO.bigWig bigWig (minus strand signal of all reads) 86.1 MB
ENCFF583HIS.tsv tsv (transcript quantifications) 29.8 MB
ENCFF584DXD.tar tar (differential splicing quantifications) 3.4 MB
ENCFF596ZOM.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF601FLT.bigWig bigWig (minus strand signal of all reads) 88.1 MB
ENCFF604OIA.tsv tsv (gene quantifications) 9.4 MB
ENCFF627BCU.tsv tsv (transcript quantifications) 25.3 MB
ENCFF640FIO.bigWig bigWig (plus strand signal of all reads) 98.3 MB
ENCFF658KYO.fastq fastq (reads) 3.2 GB
ENCFF660CEN.bigWig bigWig (plus strand signal of all reads) 98.3 MB
ENCFF669XJL.bigWig bigWig (minus strand signal of unique reads) 58.0 MB
ENCFF674BVE.bigWig bigWig (minus strand signal of unique reads) 86.5 MB
ENCFF675GOT.bam bam (alignments) 6.2 GB
ENCFF726FPZ.bigWig bigWig (plus strand signal of unique reads) 53.1 MB
ENCFF730VPZ.bigWig bigWig (plus strand signal of unique reads) 56.1 MB
ENCFF736LWY.bam bam (transcriptome alignments) 6.3 GB
ENCFF737WQW.bigWig bigWig (plus strand signal of all reads) 59.9 MB
ENCFF744WTV.bigWig bigWig (minus strand signal of all reads) 64.1 MB
ENCFF762QMX.bigWig bigWig (minus strand signal of all reads) 57.8 MB
ENCFF769YYV.bigWig bigWig (minus strand signal of unique reads) 58.1 MB
ENCFF777QHN.bigWig bigWig (minus strand signal of all reads) 55.7 MB
ENCFF787LMT.tsv tsv (transcript quantifications) 24.9 MB
ENCFF798HTE.bigWig bigWig (plus strand signal of all reads) 65.1 MB
ENCFF798ZHF.tsv tsv (transcript quantifications) 29.8 MB
ENCFF804HZT.bigWig bigWig (minus strand signal of unique reads) 87.3 MB
ENCFF831WWQ.bigWig bigWig (plus strand signal of unique reads) 82.5 MB
ENCFF849ARJ.bigWig bigWig (minus strand signal of unique reads) 80.2 MB
ENCFF866OHT.bigWig bigWig (plus strand signal of unique reads) 55.3 MB
ENCFF872CVZ.bam bam (alignments) 3.8 GB
ENCFF898UHK.fastq fastq (reads) 2.6 GB
ENCFF899GBJ.bigWig bigWig (plus strand signal of unique reads) 89.9 MB
ENCFF914VLS.bigWig bigWig (plus strand signal of unique reads) 89.6 MB
ENCFF974XAI.bigWig bigWig (minus strand signal of all reads) 96.7 MB
ENCFF980LLE.tsv tsv (differential expression quantifications) 4.4 MB
ENCFF988OQC.bigWig bigWig (plus strand signal of unique reads) 84.0 MB
ENCSR532ZPP ENCSR · via encode_api

RNA-seq on HepG2 cells treated with an shRNA knockdown against EWSR1. (EWSR1_BGHLV31)

Homo sapiens

92 data files
FileTypeSize
ENCFF003BDP.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF017VOS.tsv tsv (gene quantifications) 9.5 MB
ENCFF019RSR.bigWig bigWig (minus strand signal of all reads) 92.3 MB
ENCFF021HCB.bigWig bigWig (minus strand signal of unique reads) 75.2 MB
ENCFF039XFY.bam bam (transcriptome alignments) 4.6 GB
ENCFF058BCD.bam bam (alignments) 3.8 GB
ENCFF058NZH.tar tar (differential splicing quantifications) 3.6 MB
ENCFF084OLA.bam bam (alignments) 3.2 GB
ENCFF089TQX.bigWig bigWig (plus strand signal of unique reads) 77.7 MB
ENCFF098EHM.bam bam (alignments) 3.0 GB
ENCFF118KEA.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF121DJQ.bigWig bigWig (minus strand signal of all reads) 84.5 MB
ENCFF134KCP.fastq fastq (reads) 2.1 GB
ENCFF140PVV.fastq fastq (reads) 1.9 GB
ENCFF149JWN.bigWig bigWig (plus strand signal of unique reads) 72.4 MB
ENCFF151YUR.bigWig bigWig (plus strand signal of unique reads) 84.5 MB
ENCFF179XLL.tar tar (differential splicing quantifications) 4.3 MB
ENCFF187AOU.bigWig bigWig (plus strand signal of all reads) 94.3 MB
ENCFF189SYC.bam bam (alignments) 2.7 GB
ENCFF235NQO.bam bam (alignments) 2.9 GB
ENCFF250LZO.bigWig bigWig (plus strand signal of all reads) 85.9 MB
ENCFF252OHW.bigWig bigWig (plus strand signal of all reads) 78.6 MB
ENCFF262MSJ.bigWig bigWig (plus strand signal of all reads) 82.5 MB
ENCFF265CEU.bigWig bigWig (minus strand signal of unique reads) 75.7 MB
ENCFF273TMV.bigWig bigWig (minus strand signal of all reads) 85.4 MB
ENCFF282HYI.fastq fastq (reads) 2.1 GB
ENCFF303QQH.bigWig bigWig (plus strand signal of unique reads) 84.2 MB
ENCFF323WNL.tsv tsv (differential expression quantifications) 4.4 MB
ENCFF343LOR.bigWig bigWig (minus strand signal of all reads) 84.0 MB
ENCFF364RWV.bigWig bigWig (plus strand signal of unique reads) 77.4 MB
ENCFF398AQF.bam bam (alignments) 3.5 GB
ENCFF402MDF.bigWig bigWig (plus strand signal of all reads) 78.9 MB
ENCFF423JHG.bam bam (transcriptome alignments) 5.0 GB
ENCFF427RLR.bigWig bigWig (plus strand signal of all reads) 86.2 MB
ENCFF439JYZ.tsv tsv (transcript quantifications) 24.9 MB
ENCFF440XAP.bigWig bigWig (minus strand signal of all reads) 75.7 MB
ENCFF450YJQ.bigWig bigWig (minus strand signal of unique reads) 75.0 MB
ENCFF462BTJ.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF482FMY.tsv tsv (transcript quantifications) 25.3 MB
ENCFF490KRB.bigWig bigWig (minus strand signal of all reads) 83.8 MB
ENCFF492CNZ.tsv tsv (gene quantifications) 9.1 MB
ENCFF508FKM.bigWig bigWig (plus strand signal of unique reads) 77.9 MB
ENCFF508LSC.bam bam (alignments) 2.6 GB
ENCFF521QLP.tsv tsv (transcript quantifications) 25.3 MB
ENCFF522YID.bam bam (alignments) 3.3 GB
ENCFF545QTK.bigWig bigWig (plus strand signal of all reads) 87.4 MB
ENCFF550EVP.bam bam (transcriptome alignments) 5.4 GB
ENCFF561WHE.bigWig bigWig (plus strand signal of all reads) 77.5 MB
ENCFF563OQV.tsv tsv (transcript quantifications) 27.4 MB
ENCFF580OEX.tsv tsv (gene quantifications) 9.5 MB
ENCFF583DHA.bigWig bigWig (minus strand signal of unique reads) 78.1 MB
ENCFF584DDC.bam bam (alignments) 2.6 GB
ENCFF588VUS.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF599PIL.bigWig bigWig (plus strand signal of unique reads) 77.2 MB
ENCFF609ZTB.bigWig bigWig (minus strand signal of all reads) 80.5 MB
ENCFF609ZZE.tsv tsv (transcript quantifications) 27.2 MB
ENCFF649ZRD.tsv tsv (gene quantifications) 10.4 MB
ENCFF675RMH.tsv tsv (transcript quantifications) 29.8 MB
ENCFF676VXE.bigWig bigWig (plus strand signal of unique reads) 85.2 MB
ENCFF686ESD.bigWig bigWig (plus strand signal of all reads) 93.3 MB
ENCFF707AJC.bigWig bigWig (minus strand signal of unique reads) 78.6 MB
ENCFF718LCQ.bigWig bigWig (minus strand signal of unique reads) 75.2 MB
ENCFF725QWZ.bigWig bigWig (plus strand signal of unique reads) 73.7 MB
ENCFF737OVC.bigWig bigWig (minus strand signal of unique reads) 81.8 MB
ENCFF743IZJ.bigWig bigWig (plus strand signal of all reads) 86.2 MB
ENCFF754JPX.bigWig bigWig (minus strand signal of all reads) 77.0 MB
ENCFF760OVZ.bigWig bigWig (minus strand signal of all reads) 77.2 MB
ENCFF761PZW.tsv tsv (transcript quantifications) 29.8 MB
ENCFF769LBZ.bigWig bigWig (minus strand signal of unique reads) 82.0 MB
ENCFF770MWG.bigWig bigWig (minus strand signal of all reads) 91.5 MB
ENCFF774DNX.bigWig bigWig (minus strand signal of unique reads) 82.7 MB
ENCFF778TBG.tsv tsv (gene quantifications) 10.4 MB
ENCFF781NEH.bigWig bigWig (plus strand signal of unique reads) 80.9 MB
ENCFF788BJD.tar tar (differential splicing quantifications) 16.9 MB
ENCFF790NYS.bigWig bigWig (minus strand signal of all reads) 84.5 MB
ENCFF804EYQ.fastq fastq (reads) 1.9 GB
ENCFF810GPA.bam bam (transcriptome alignments) 5.0 GB
ENCFF811NAN.bam bam (alignments) 2.9 GB
ENCFF828PXP.bigWig bigWig (plus strand signal of unique reads) 73.1 MB
ENCFF849LDH.bigWig bigWig (plus strand signal of unique reads) 80.6 MB
ENCFF863YWK.tsv tsv (gene quantifications) 9.1 MB
ENCFF870GCO.tsv tsv (transcript quantifications) 24.9 MB
ENCFF882FCG.bigWig bigWig (minus strand signal of unique reads) 70.0 MB
ENCFF893MMI.bigWig bigWig (minus strand signal of unique reads) 70.9 MB
ENCFF913YGJ.bigWig bigWig (plus strand signal of all reads) 94.3 MB
ENCFF958TXN.bigWig bigWig (plus strand signal of all reads) 85.3 MB
ENCFF965QFL.bigWig bigWig (minus strand signal of unique reads) 71.7 MB
ENCFF967TBU.bigWig bigWig (minus strand signal of all reads) 92.3 MB
ENCFF975RZF.bam bam (transcriptome alignments) 5.8 GB
ENCFF979YYG.bam bam (alignments) 3.8 GB
ENCFF991MXW.bam bam (transcriptome alignments) 4.7 GB
ENCFF993WTH.bam bam (alignments) 3.3 GB
ENCSR306EIU ENCSR · via encode_api

RNA-seq on K562 cells treated with an shRNA knockdown against CSDA. (CSDA_BGKLV24)

Homo sapiens

92 data files
FileTypeSize
ENCFF007ZHF.tsv tsv (transcript quantifications) 24.9 MB
ENCFF022EUQ.bigWig bigWig (minus strand signal of all reads) 73.8 MB
ENCFF024MHZ.bigWig bigWig (minus strand signal of unique reads) 52.2 MB
ENCFF034RVN.tsv tsv (transcript quantifications) 25.3 MB
ENCFF035UUV.bigWig bigWig (plus strand signal of all reads) 66.5 MB
ENCFF048SVW.bam bam (alignments) 3.0 GB
ENCFF113VLI.tar tar (differential splicing quantifications) 3.0 MB
ENCFF130XYW.bigWig bigWig (plus strand signal of unique reads) 61.3 MB
ENCFF132DZK.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF137HCB.tsv tsv (gene quantifications) 10.4 MB
ENCFF137HHW.bigWig bigWig (minus strand signal of all reads) 72.8 MB
ENCFF139FAW.bigWig bigWig (minus strand signal of unique reads) 59.7 MB
ENCFF140AFT.bigWig bigWig (plus strand signal of unique reads) 57.5 MB
ENCFF141KJO.bigWig bigWig (plus strand signal of unique reads) 62.4 MB
ENCFF157UIG.bigWig bigWig (minus strand signal of unique reads) 61.2 MB
ENCFF193SFP.bigWig bigWig (plus strand signal of all reads) 74.5 MB
ENCFF229GGA.tsv tsv (transcript quantifications) 25.3 MB
ENCFF233WKN.bigWig bigWig (plus strand signal of all reads) 63.6 MB
ENCFF238MTQ.tsv tsv (transcript quantifications) 27.3 MB
ENCFF240RZB.bigWig bigWig (minus strand signal of all reads) 67.5 MB
ENCFF242LPH.bam bam (alignments) 3.1 GB
ENCFF244TQA.bigWig bigWig (plus strand signal of unique reads) 58.9 MB
ENCFF247PAT.fastq fastq (reads) 2.1 GB
ENCFF251ODN.bigWig bigWig (minus strand signal of all reads) 66.2 MB
ENCFF251SQH.bigWig bigWig (plus strand signal of unique reads) 57.5 MB
ENCFF258VSZ.bigWig bigWig (minus strand signal of all reads) 60.2 MB
ENCFF258ZRG.fastq fastq (reads) 1.7 GB
ENCFF263WNS.bigWig bigWig (plus strand signal of unique reads) 61.2 MB
ENCFF275JTF.fastq fastq (reads) 1.5 GB
ENCFF278RFR.bigWig bigWig (plus strand signal of unique reads) 66.4 MB
ENCFF316JWH.bigWig bigWig (plus strand signal of all reads) 68.2 MB
ENCFF324FTP.bigWig bigWig (minus strand signal of all reads) 67.5 MB
ENCFF334WEL.bigWig bigWig (minus strand signal of unique reads) 64.8 MB
ENCFF348MIN.bigWig bigWig (plus strand signal of all reads) 60.9 MB
ENCFF348XKT.bigWig bigWig (plus strand signal of all reads) 68.2 MB
ENCFF355BAW.fastq fastq (reads) 1.9 GB
ENCFF355BLG.bigWig bigWig (minus strand signal of unique reads) 59.9 MB
ENCFF364YQG.tsv tsv (differential expression quantifications) 1.8 MB
ENCFF375ZNG.tsv tsv (gene quantifications) 9.1 MB
ENCFF389VGK.bigWig bigWig (plus strand signal of unique reads) 53.6 MB
ENCFF393MRN.bigWig bigWig (minus strand signal of all reads) 61.1 MB
ENCFF413YDN.bigWig bigWig (minus strand signal of all reads) 67.0 MB
ENCFF442XLK.tsv tsv (differential expression quantifications) 2.7 MB
ENCFF452TQO.bigWig bigWig (plus strand signal of unique reads) 61.3 MB
ENCFF481QJO.bigWig bigWig (plus strand signal of all reads) 58.0 MB
ENCFF482WWJ.tsv tsv (gene quantifications) 9.4 MB
ENCFF490OZK.bigWig bigWig (minus strand signal of unique reads) 65.0 MB
ENCFF507VIL.bam bam (alignments) 3.6 GB
ENCFF516WEP.bam bam (alignments) 3.1 GB
ENCFF533VHM.bigWig bigWig (plus strand signal of all reads) 62.1 MB
ENCFF547DIS.bam bam (alignments) 3.7 GB
ENCFF554QSB.bigWig bigWig (plus strand signal of all reads) 67.2 MB
ENCFF566DSC.tar tar (differential splicing quantifications) 3.3 MB
ENCFF566IIU.bam bam (transcriptome alignments) 4.9 GB
ENCFF572GSB.bam bam (alignments) 3.1 GB
ENCFF604DCD.bigWig bigWig (plus strand signal of unique reads) 65.7 MB
ENCFF638FCH.bigWig bigWig (minus strand signal of unique reads) 57.4 MB
ENCFF709DOB.bam bam (transcriptome alignments) 4.0 GB
ENCFF737GLT.tsv tsv (differential expression quantifications) 4.0 MB
ENCFF742QLR.bam bam (alignments) 2.6 GB
ENCFF752CBR.bam bam (transcriptome alignments) 4.4 GB
ENCFF766WHI.tsv tsv (gene quantifications) 9.1 MB
ENCFF775XDQ.tsv tsv (gene quantifications) 10.4 MB
ENCFF777YYI.bam bam (transcriptome alignments) 4.4 GB
ENCFF778NTY.bigWig bigWig (plus strand signal of unique reads) 66.4 MB
ENCFF781IMX.bigWig bigWig (minus strand signal of all reads) 62.6 MB
ENCFF782PSZ.bam bam (alignments) 3.1 GB
ENCFF796IIV.bam bam (alignments) 2.6 GB
ENCFF799NNV.tsv tsv (transcript quantifications) 29.8 MB
ENCFF823HIB.bigWig bigWig (minus strand signal of unique reads) 59.9 MB
ENCFF829GNT.bigWig bigWig (plus strand signal of all reads) 74.6 MB
ENCFF829KUN.tsv tsv (transcript quantifications) 27.3 MB
ENCFF835AHY.tsv tsv (gene quantifications) 9.4 MB
ENCFF839TQH.bam bam (alignments) 3.1 GB
ENCFF845PZU.tsv tsv (transcript quantifications) 29.8 MB
ENCFF846CPV.bigWig bigWig (plus strand signal of all reads) 67.9 MB
ENCFF859EON.bigWig bigWig (minus strand signal of unique reads) 56.1 MB
ENCFF868ZWM.bigWig bigWig (minus strand signal of unique reads) 60.7 MB
ENCFF874HKS.bam bam (alignments) 3.7 GB
ENCFF881RFX.bigWig bigWig (plus strand signal of all reads) 73.6 MB
ENCFF894HDB.bam bam (transcriptome alignments) 3.5 GB
ENCFF895ROZ.bigWig bigWig (minus strand signal of all reads) 57.1 MB
ENCFF901BKV.bigWig bigWig (minus strand signal of unique reads) 64.3 MB
ENCFF901OCW.bigWig bigWig (minus strand signal of all reads) 73.8 MB
ENCFF906WAY.tsv tsv (differential expression quantifications) 5.5 MB
ENCFF916QEA.bigWig bigWig (plus strand signal of unique reads) 62.1 MB
ENCFF935FMV.bam bam (transcriptome alignments) 3.6 GB
ENCFF946GIO.bigWig bigWig (minus strand signal of unique reads) 56.3 MB
ENCFF956FYQ.bigWig bigWig (minus strand signal of all reads) 65.9 MB
ENCFF983UEX.bam bam (alignments) 2.6 GB
ENCFF985VVB.tar tar (differential splicing quantifications) 13.1 MB
ENCFF989HIK.tsv tsv (transcript quantifications) 24.9 MB
ENCSR001VAC ENCSR · via encode_api

eCLIP experiment on K562 against NOLC1

Homo sapiens

30 data files
FileTypeSize
ENCFF012GRH.bigBed bigBed (peaks) 2.7 MB
ENCFF020GRQ.bigBed bigBed (peaks) 3.7 MB
ENCFF102JHG.bam bam (alignments) 273.3 MB
ENCFF120UIK.fastq fastq (reads) 443.0 MB
ENCFF151HRC.bed bed (peaks) 35.7 KB
ENCFF151WQL.bigBed bigBed (peaks) 538.4 KB
ENCFF193VAQ.bed bed (peaks) 1.3 MB
ENCFF195WCS.bigWig bigWig (plus strand signal of unique reads) 15.6 MB
ENCFF229LUI.bigWig bigWig (minus strand signal of unique reads) 21.5 MB
ENCFF287SEB.bed bed (peaks) 671.3 KB
ENCFF308PTN.bigBed bigBed (peaks) 2.6 MB
ENCFF315OLY.bam bam (alignments) 438.3 MB
ENCFF327YTD.bed bed (peaks) 36.1 KB
ENCFF362IRW.bam bam (alignments) 460.6 MB
ENCFF436BMC.bigBed bigBed (peaks) 3.8 MB
ENCFF470KOV.bigWig bigWig (plus strand signal of unique reads) 23.4 MB
ENCFF477USX.bigWig bigWig (plus strand signal of unique reads) 15.1 MB
ENCFF480NPA.bigWig bigWig (plus strand signal of unique reads) 22.3 MB
ENCFF498BYQ.fastq fastq (reads) 418.6 MB
ENCFF559UDZ.bigWig bigWig (minus strand signal of unique reads) 14.7 MB
ENCFF599BAD.bigWig bigWig (minus strand signal of unique reads) 22.5 MB
ENCFF624HKO.bam bam (alignments) 285.4 MB
ENCFF678KRL.fastq fastq (reads) 458.6 MB
ENCFF754NXM.bed bed (peaks) 1.3 MB
ENCFF760NPR.bed bed (peaks) 701.0 KB
ENCFF810IDY.bed bed (peaks) 1.9 MB
ENCFF822WIJ.bigWig bigWig (minus strand signal of unique reads) 15.1 MB
ENCFF915RFF.bed bed (peaks) 237.5 KB
ENCFF942SMX.bed bed (peaks) 1.9 MB
ENCFF974GXQ.fastq fastq (reads) 487.1 MB
ENCSR786TSC ENCSR · via encode_api

eCLIP experiment on HepG2 against ILF3

Homo sapiens

34 data files
FileTypeSize
ENCFF071QDP.bed bed (peaks) 74.8 KB
ENCFF074UXY.bigBed bigBed (peaks) 1.3 MB
ENCFF160SMQ.bed bed (peaks) 307.7 KB
ENCFF163SPX.bigWig bigWig (minus strand signal of unique reads) 32.7 MB
ENCFF180KDU.bigBed bigBed (peaks) 640.7 KB
ENCFF245KXT.bam bam (alignments) 289.4 MB
ENCFF286FBL.bam bam (alignments) 640.3 MB
ENCFF314QOR.bed bed (peaks) 815.1 KB
ENCFF340GPD.bed bed (peaks) 3.4 MB
ENCFF357DPL.fastq fastq (reads) 553.7 MB
ENCFF360ESL.bigWig bigWig (plus strand signal of unique reads) 33.8 MB
ENCFF397SJF.bigBed bigBed (peaks) 3.8 MB
ENCFF409NUO.bam bam (alignments) 296.9 MB
ENCFF431PMM.fastq fastq (reads) 726.4 MB
ENCFF460MRE.bed bed (peaks) 2.0 MB
ENCFF479BNC.fastq fastq (reads) 736.6 MB
ENCFF485DDA.bed bed (peaks) 69.1 KB
ENCFF526RKP.bigWig bigWig (minus strand signal of unique reads) 33.3 MB
ENCFF535COB.bed bed (peaks) 3.4 MB
ENCFF561XLN.bigBed bigBed (peaks) 671.2 KB
ENCFF568MYZ.fastq fastq (reads) 560.6 MB
ENCFF569JRG.bigBed bigBed (peaks) 6.1 MB
ENCFF657ABW.bigBed bigBed (peaks) 1.8 MB
ENCFF657PVX.bigWig bigWig (plus strand signal of unique reads) 19.1 MB
ENCFF702XFC.bam bam (alignments) 621.9 MB
ENCFF732JFG.bed bed (peaks) 719.1 KB
ENCFF742FIR.bigWig bigWig (minus strand signal of unique reads) 18.2 MB
ENCFF781BNR.bigWig bigWig (minus strand signal of unique reads) 18.5 MB
ENCFF824VQC.bigWig bigWig (plus strand signal of unique reads) 34.4 MB
ENCFF841BJF.bed bed (peaks) 2.0 MB
ENCFF889CSO.bigBed bigBed (peaks) 6.0 MB
ENCFF963MRY.bigBed bigBed (peaks) 3.8 MB
ENCFF964SNJ.bed bed (peaks) 278.3 KB
ENCFF991DQV.bigWig bigWig (plus strand signal of unique reads) 18.7 MB
ENCSR888YTT ENCSR · via encode_api

eCLIP experiment on K562 against LARP4

Homo sapiens

36 data files
FileTypeSize
ENCFF013LBJ.bed bed (peaks) 834.2 KB
ENCFF046YJP.bed bed (peaks) 470.3 KB
ENCFF048DXF.bigBed bigBed (peaks) 621.4 KB
ENCFF109RNC.fastq fastq (reads) 567.1 MB
ENCFF139BSF.bed bed (peaks) 340.2 KB
ENCFF140LQE.bigBed bigBed (peaks) 1.9 MB
ENCFF157DJT.bigBed bigBed (peaks) 452.6 KB
ENCFF157OQS.bigBed bigBed (peaks) 1.5 MB
ENCFF169FBJ.bigBed bigBed (peaks) 2.1 MB
ENCFF244OJJ.bigWig bigWig (minus strand signal of unique reads) 12.6 MB
ENCFF257EYW.bigBed bigBed (peaks) 1.8 MB
ENCFF259HTD.bed bed (peaks) 1.1 MB
ENCFF284NOU.bed bed (peaks) 10.9 KB
ENCFF290PER.bed bed (peaks) 179.1 KB
ENCFF305LNT.bed bed (peaks) 1.1 MB
ENCFF438YGF.bigBed bigBed (peaks) 2.1 MB
ENCFF483RXE.bigWig bigWig (plus strand signal of unique reads) 6.9 MB
ENCFF498JIR.fastq fastq (reads) 574.0 MB
ENCFF522BBU.bigBed bigBed (peaks) 1.9 MB
ENCFF528CMP.bam bam (alignments) 142.4 MB
ENCFF544HGJ.bed bed (peaks) 1.2 MB
ENCFF554KDS.bigWig bigWig (plus strand signal of unique reads) 13.1 MB
ENCFF642AQR.bigWig bigWig (plus strand signal of unique reads) 13.2 MB
ENCFF644NKM.bam bam (alignments) 206.1 MB
ENCFF685FNB.bam bam (alignments) 203.1 MB
ENCFF730QLX.bigWig bigWig (minus strand signal of unique reads) 6.6 MB
ENCFF745LDV.bigBed bigBed (peaks) 3.2 MB
ENCFF773GGY.bam bam (alignments) 139.7 MB
ENCFF774DRK.bigWig bigWig (minus strand signal of unique reads) 6.6 MB
ENCFF780ORI.fastq fastq (reads) 414.6 MB
ENCFF876VWR.bigBed bigBed (peaks) 952.7 KB
ENCFF902BBF.bigWig bigWig (minus strand signal of unique reads) 12.5 MB
ENCFF947CIN.bed bed (peaks) 11.0 KB
ENCFF982PZA.bigWig bigWig (plus strand signal of unique reads) 6.8 MB
ENCFF984MPJ.fastq fastq (reads) 417.6 MB
ENCFF986MGC.bed bed (peaks) 1.2 MB
ENCSR825SVO ENCSR · via encode_api

eCLIP experiment on K562 against AARS

Homo sapiens

35 data files
FileTypeSize
ENCFF128BDG.bed bed (peaks) 1.4 KB
ENCFF138HJK.bigBed bigBed (peaks) 1.4 MB
ENCFF177VXU.bigBed bigBed (peaks) 430.0 KB
ENCFF192GIC.bigWig bigWig (minus strand signal of unique reads) 4.2 MB
ENCFF202EVU.bed bed (peaks) 231.8 KB
ENCFF236UYB.bam bam (alignments) 84.8 MB
ENCFF249ULX.fastq fastq (reads) 880.3 MB
ENCFF279SZJ.bigWig bigWig (minus strand signal of unique reads) 4.7 MB
ENCFF315MYF.fastq fastq (reads) 597.4 MB
ENCFF319HWE.bigBed bigBed (peaks) 875.2 KB
ENCFF354UTQ.bigWig bigWig (plus strand signal of unique reads) 5.0 MB
ENCFF374VRV.bed bed (peaks) 893.1 KB
ENCFF386NTN.bigWig bigWig (plus strand signal of unique reads) 4.2 MB
ENCFF388LRZ.bigWig bigWig (minus strand signal of unique reads) 4.6 MB
ENCFF400HPZ.bed bed (peaks) 782.6 KB
ENCFF432TQD.bigBed bigBed (peaks) 1.3 MB
ENCFF444EFX.bigWig bigWig (plus strand signal of unique reads) 4.4 MB
ENCFF460UUV.bed bed (peaks) 616.0 KB
ENCFF500QFI.bigWig bigWig (minus strand signal of unique reads) 4.0 MB
ENCFF502RSZ.bam bam (alignments) 79.7 MB
ENCFF505WTD.fastq fastq (reads) 832.4 MB
ENCFF563LDK.bigBed bigBed (peaks) 1.2 MB
ENCFF596TWK.bigBed bigBed (peaks) 1.6 MB
ENCFF604TLE.bigWig bigWig (plus strand signal of unique reads) 4.8 MB
ENCFF684FVK.bed bed (peaks) 861.2 KB
ENCFF692AEZ.bam bam (alignments) 94.1 MB
ENCFF694QCY.bam bam (alignments) 98.2 MB
ENCFF698SDU.fastq fastq (reads) 636.8 MB
ENCFF756RYJ.bed bed (peaks) 1.5 KB
ENCFF781HKQ.bigBed bigBed (peaks) 461.4 KB
ENCFF820XFL.bigBed bigBed (peaks) 2.3 MB
ENCFF883DWR.bed bed (peaks) 732.8 KB
ENCFF920KVN.bed bed (peaks) 522.5 KB
ENCFF939QQK.bed bed (peaks) 207.5 KB
ENCFF964FXU.bigBed bigBed (peaks) 1.5 MB
ENCSR154HRN ENCSR · via encode_api

eCLIP experiment on K562 against HNRNPA1

Homo sapiens

36 data files
FileTypeSize
ENCFF012EDL.bam bam (alignments) 497.0 MB
ENCFF018UJY.bigWig bigWig (plus strand signal of unique reads) 15.4 MB
ENCFF075GYH.bigBed bigBed (peaks) 1.1 MB
ENCFF099FEV.bigWig bigWig (plus strand signal of unique reads) 30.9 MB
ENCFF100JBV.bed bed (peaks) 3.2 MB
ENCFF107UYK.fastq fastq (reads) 347.5 MB
ENCFF174RLY.bed bed (peaks) 1.3 MB
ENCFF288SMV.bed bed (peaks) 129.8 KB
ENCFF292CIT.bam bam (alignments) 215.6 MB
ENCFF352GSS.fastq fastq (reads) 155.1 MB
ENCFF380HEW.bed bed (peaks) 381.6 KB
ENCFF392AEV.bed bed (peaks) 4.7 KB
ENCFF401DKP.bigWig bigWig (plus strand signal of unique reads) 15.3 MB
ENCFF434TZT.bigBed bigBed (peaks) 2.2 MB
ENCFF457MNN.bed bed (peaks) 203.7 KB
ENCFF476QPD.bigBed bigBed (peaks) 800.4 KB
ENCFF480LJU.bigWig bigWig (minus strand signal of unique reads) 14.7 MB
ENCFF520LTV.bigWig bigWig (minus strand signal of unique reads) 29.6 MB
ENCFF537HGP.bigBed bigBed (peaks) 2.0 MB
ENCFF546OAU.fastq fastq (reads) 356.1 MB
ENCFF549HTU.bigBed bigBed (peaks) 5.7 MB
ENCFF553MNY.bigBed bigBed (peaks) 2.1 MB
ENCFF554KBC.bigBed bigBed (peaks) 481.3 KB
ENCFF571IRN.bam bam (alignments) 495.6 MB
ENCFF614BUK.bigBed bigBed (peaks) 306.3 KB
ENCFF615KJU.bed bed (peaks) 3.2 MB
ENCFF677OHD.bigWig bigWig (minus strand signal of unique reads) 14.6 MB
ENCFF697CNE.bigBed bigBed (peaks) 5.7 MB
ENCFF697PSM.bigWig bigWig (plus strand signal of unique reads) 30.9 MB
ENCFF850NCY.fastq fastq (reads) 160.6 MB
ENCFF853SRF.bigBed bigBed (peaks) 1.6 MB
ENCFF876SGL.bam bam (alignments) 214.1 MB
ENCFF902IDT.bed bed (peaks) 1.3 MB
ENCFF955PCQ.bed bed (peaks) 4.0 KB
ENCFF993GLW.bed bed (peaks) 587.7 KB
ENCFF997XKK.bigWig bigWig (minus strand signal of unique reads) 29.6 MB
ENCSR769UEW ENCSR · via encode_api

eCLIP experiment on HepG2 against HNRNPA1

Homo sapiens

36 data files
FileTypeSize
ENCFF002NAF.bigBed bigBed (peaks) 5.6 MB
ENCFF010PNI.bigBed bigBed (peaks) 2.6 MB
ENCFF061FBN.bigWig bigWig (minus strand signal of unique reads) 27.5 MB
ENCFF068NOP.fastq fastq (reads) 663.0 MB
ENCFF080DPL.bigWig bigWig (plus strand signal of unique reads) 51.0 MB
ENCFF105KLN.bigBed bigBed (peaks) 2.1 MB
ENCFF121XLA.bed bed (peaks) 2.5 KB
ENCFF224UUW.fastq fastq (reads) 677.6 MB
ENCFF276NLJ.bed bed (peaks) 240.6 KB
ENCFF330OFU.bam bam (alignments) 954.9 MB
ENCFF356JGP.bed bed (peaks) 491.8 KB
ENCFF361AWK.fastq fastq (reads) 363.1 MB
ENCFF371UCL.bigBed bigBed (peaks) 4.2 MB
ENCFF396YUX.bigBed bigBed (peaks) 540.0 KB
ENCFF435FCH.bigBed bigBed (peaks) 438.0 KB
ENCFF460DOL.bigWig bigWig (minus strand signal of unique reads) 49.6 MB
ENCFF535MAE.bed bed (peaks) 3.0 MB
ENCFF561NYA.bigWig bigWig (plus strand signal of unique reads) 29.2 MB
ENCFF599CUU.bed bed (peaks) 3.1 MB
ENCFF604WJZ.bed bed (peaks) 5.2 MB
ENCFF644TNI.bigWig bigWig (minus strand signal of unique reads) 28.2 MB
ENCFF690NVV.bam bam (alignments) 504.8 MB
ENCFF704FXH.bigBed bigBed (peaks) 8.6 MB
ENCFF706CRY.bigWig bigWig (plus strand signal of unique reads) 50.8 MB
ENCFF722RBO.bed bed (peaks) 5.3 MB
ENCFF797GSK.bed bed (peaks) 2.5 KB
ENCFF804BLC.bam bam (alignments) 487.3 MB
ENCFF867GHS.bed bed (peaks) 672.2 KB
ENCFF870SOY.bigWig bigWig (plus strand signal of unique reads) 28.5 MB
ENCFF877IHN.bigWig bigWig (minus strand signal of unique reads) 49.4 MB
ENCFF923MNO.bigBed bigBed (peaks) 1.2 MB
ENCFF924ZOP.bigBed bigBed (peaks) 8.6 MB
ENCFF934VGP.bigBed bigBed (peaks) 967.1 KB
ENCFF938FPK.bed bed (peaks) 174.4 KB
ENCFF963VIU.bam bam (alignments) 959.9 MB
ENCFF997GSC.fastq fastq (reads) 328.0 MB
ENCSR589YHM ENCSR · via encode_api

eCLIP experiment on K562 against HLTF

Homo sapiens

36 data files
FileTypeSize
ENCFF003PBU.bigBed bigBed (peaks) 3.5 MB
ENCFF043RMT.bam bam (alignments) 404.8 MB
ENCFF057MVG.bam bam (alignments) 419.1 MB
ENCFF067JFA.bigWig bigWig (plus strand signal of unique reads) 20.2 MB
ENCFF100BWD.bigBed bigBed (peaks) 850.6 KB
ENCFF114YWP.bed bed (peaks) 1.9 MB
ENCFF115CKY.bam bam (alignments) 396.5 MB
ENCFF117EMD.bed bed (peaks) 356.5 KB
ENCFF136FUR.bigWig bigWig (minus strand signal of unique reads) 19.3 MB
ENCFF249RCK.bed bed (peaks) 436.5 KB
ENCFF316ABR.bigWig bigWig (minus strand signal of unique reads) 19.6 MB
ENCFF316ZTK.bigBed bigBed (peaks) 3.4 MB
ENCFF325PJW.fastq fastq (reads) 634.6 MB
ENCFF351MIX.bigWig bigWig (plus strand signal of unique reads) 20.0 MB
ENCFF370ROE.bam bam (alignments) 427.8 MB
ENCFF406MSI.bed bed (peaks) 6.3 KB
ENCFF442CAN.fastq fastq (reads) 618.9 MB
ENCFF538MPL.fastq fastq (reads) 631.6 MB
ENCFF565KZA.bigWig bigWig (plus strand signal of unique reads) 21.4 MB
ENCFF585JGS.bigBed bigBed (peaks) 1000.8 KB
ENCFF606WPI.bigBed bigBed (peaks) 3.7 MB
ENCFF623DVN.bed bed (peaks) 4.3 KB
ENCFF660SOX.bed bed (peaks) 1.1 MB
ENCFF678TDV.bigBed bigBed (peaks) 1.9 MB
ENCFF726GRF.bed bed (peaks) 1.8 MB
ENCFF735BFL.bigWig bigWig (minus strand signal of unique reads) 21.0 MB
ENCFF806QVQ.bigWig bigWig (minus strand signal of unique reads) 20.8 MB
ENCFF808XUD.bigBed bigBed (peaks) 3.6 MB
ENCFF814HAY.fastq fastq (reads) 612.9 MB
ENCFF834GXD.bigWig bigWig (plus strand signal of unique reads) 21.7 MB
ENCFF843OHC.bigBed bigBed (peaks) 2.1 MB
ENCFF854GBT.bed bed (peaks) 1.8 MB
ENCFF918RNZ.bigBed bigBed (peaks) 3.7 MB
ENCFF950GJC.bigBed bigBed (peaks) 4.2 MB
ENCFF952TOI.bed bed (peaks) 1.9 MB
ENCFF988KWU.bed bed (peaks) 945.1 KB
ENCSR279UJF ENCSR · via encode_api

eCLIP experiment on HepG2 against SF3B4

Homo sapiens

35 data files
FileTypeSize
ENCFF016DAZ.bigWig bigWig (plus strand signal of unique reads) 8.5 MB
ENCFF040BYE.bam bam (alignments) 114.9 MB
ENCFF073IJF.bed bed (peaks) 126.5 KB
ENCFF097FBP.bed bed (peaks) 125.1 KB
ENCFF164CMJ.bigBed bigBed (peaks) 763.8 KB
ENCFF183UGH.bigWig bigWig (minus strand signal of unique reads) 8.1 MB
ENCFF232FWK.bed bed (peaks) 903.0 KB
ENCFF319QWS.bigBed bigBed (peaks) 1.8 MB
ENCFF344PIE.bigBed bigBed (peaks) 1.8 MB
ENCFF352PAK.bam bam (alignments) 112.6 MB
ENCFF363PGR.bed bed (peaks) 898.6 KB
ENCFF367PPA.bed bed (peaks) 343.9 KB
ENCFF467KAQ.bigWig bigWig (plus strand signal of unique reads) 9.0 MB
ENCFF483JLM.bigBed bigBed (peaks) 1.5 MB
ENCFF483VLR.bam bam (alignments) 112.2 MB
ENCFF494AZP.bed bed (peaks) 660.3 KB
ENCFF512AHE.bigBed bigBed (peaks) 2.4 MB
ENCFF546FNN.bigBed bigBed (peaks) 1.3 MB
ENCFF581RVY.bed bed (peaks) 890.3 KB
ENCFF609YUD.bigBed bigBed (peaks) 1.4 MB
ENCFF616ZLK.bigWig bigWig (minus strand signal of unique reads) 8.7 MB
ENCFF645FKC.bigWig bigWig (plus strand signal of unique reads) 8.5 MB
ENCFF645GQJ.bigWig bigWig (minus strand signal of unique reads) 8.1 MB
ENCFF702GTT.fastq fastq (reads) 207.7 MB
ENCFF706GBT.bigWig bigWig (minus strand signal of unique reads) 8.7 MB
ENCFF722QLW.fastq fastq (reads) 207.0 MB
ENCFF744CKU.bed bed (peaks) 896.1 KB
ENCFF746RAA.bed bed (peaks) 712.4 KB
ENCFF769WSU.bigBed bigBed (peaks) 654.7 KB
ENCFF782HSL.bigBed bigBed (peaks) 1.9 MB
ENCFF795NIS.bed bed (peaks) 294.7 KB
ENCFF841WFK.bigWig bigWig (plus strand signal of unique reads) 9.0 MB
ENCFF855AZI.bam bam (alignments) 114.9 MB
ENCFF869UXX.fastq fastq (reads) 205.4 MB
ENCFF992GNI.fastq fastq (reads) 200.0 MB
ENCSR548RVM ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) pulldown experiment against RBM6

13 data files
FileTypeSize
ENCFF002VNX.fastq fastq (reads) 548.4 MB
ENCFF133WMF.fastq fastq (reads) 563.7 MB
ENCFF150OOG.tsv tsv (enrichment) 10.0 KB
ENCFF191CTZ.tsv tsv (enrichment) 688.0 KB
ENCFF202DIL.tsv tsv (library fraction) 64.0 KB
ENCFF229GWE.fastq fastq (reads) 705.4 MB
ENCFF264BEX.tsv tsv (library fraction) 265.0 KB
ENCFF409JMW.tsv tsv (library fraction) 1.1 MB
ENCFF612PCY.tsv tsv (enrichment) 41.0 KB
ENCFF726YHH.tsv tsv (library fraction) 15.2 KB
ENCFF793PCZ.tsv tsv (enrichment) 168.0 KB
ENCFF796ZYM.fastq fastq (reads) 451.6 MB
ENCFF880ULO.fastq fastq (reads) 492.0 MB
ENCSR264RVK ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) pulldown experiment against RBM47

14 data files
FileTypeSize
ENCFF034WGD.tsv tsv (library fraction) 1.4 MB
ENCFF051CMM.fastq fastq (reads) 412.6 MB
ENCFF063VIP.tsv tsv (enrichment) 224.1 KB
ENCFF124DAS.tsv tsv (library fraction) 359.5 KB
ENCFF152YBN.fastq fastq (reads) 455.4 MB
ENCFF211NKK.fastq fastq (reads) 715.1 MB
ENCFF309STS.tsv tsv (library fraction) 88.1 KB
ENCFF546CET.fastq fastq (reads) 414.5 MB
ENCFF639XVL.tsv tsv (enrichment) 13.6 KB
ENCFF650UUT.fastq fastq (reads) 614.5 MB
ENCFF689ZBZ.tsv tsv (library fraction) 21.4 KB
ENCFF753GNQ.fastq fastq (reads) 579.2 MB
ENCFF953ZVW.tsv tsv (enrichment) 55.1 KB
ENCFF995ECH.tsv tsv (enrichment) 912.1 KB
ENCSR110XNS ENCSR · via encode_api

eCLIP control experiment on HepG2 against HNRNPA1

Homo sapiens

8 data files
FileTypeSize
ENCFF169YBI.bigWig bigWig (plus strand signal of unique reads) 12.7 MB
ENCFF184MNE.bigWig bigWig (plus strand signal of unique reads) 12.2 MB
ENCFF205PBQ.bam bam (alignments) 153.4 MB
ENCFF389NBF.bigWig bigWig (minus strand signal of unique reads) 11.9 MB
ENCFF483JSE.fastq fastq (reads) 314.5 MB
ENCFF536WIF.bam bam (alignments) 155.6 MB
ENCFF825RPQ.bigWig bigWig (minus strand signal of unique reads) 12.3 MB
ENCFF854MYE.fastq fastq (reads) 328.7 MB
ENCSR118LLV ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) mock pulldown control experiment of TRA2A

1 data file
FileTypeSize
ENCFF499TRO.fastq fastq (reads) 213.8 MB
ENCSR497ANA ENCSR · via encode_api

eCLIP control experiment on HepG2 against HNRNPC

Homo sapiens

8 data files
FileTypeSize
ENCFF005TOO.bigWig bigWig (minus strand signal of unique reads) 22.4 MB
ENCFF109ZAY.bigWig bigWig (minus strand signal of unique reads) 22.5 MB
ENCFF357SNM.fastq fastq (reads) 410.0 MB
ENCFF412YDY.fastq fastq (reads) 435.8 MB
ENCFF533EON.bigWig bigWig (plus strand signal of unique reads) 23.1 MB
ENCFF638TZT.bigWig bigWig (plus strand signal of unique reads) 22.8 MB
ENCFF823ZZZ.bam bam (alignments) 459.4 MB
ENCFF885KNL.bam bam (alignments) 462.2 MB
ENCSR975KIR ENCSR · via encode_api

eCLIP experiment on K562 against IGF2BP1

Homo sapiens

36 data files
FileTypeSize
ENCFF002KWR.bam bam (alignments) 264.0 MB
ENCFF034HCU.bed bed (peaks) 856.2 KB
ENCFF054IWW.bigBed bigBed (peaks) 1.7 MB
ENCFF073EAX.bigBed bigBed (peaks) 1.0 MB
ENCFF088JXR.fastq fastq (reads) 221.6 MB
ENCFF142XLV.bigWig bigWig (minus strand signal of unique reads) 11.6 MB
ENCFF185IDD.bed bed (peaks) 1.0 MB
ENCFF188WYT.bed bed (peaks) 1.1 MB
ENCFF197PZA.bigBed bigBed (peaks) 2.6 MB
ENCFF228PAK.bigBed bigBed (peaks) 2.5 MB
ENCFF238DNC.bigWig bigWig (minus strand signal of unique reads) 13.6 MB
ENCFF271KYF.fastq fastq (reads) 171.9 MB
ENCFF304RKO.bigBed bigBed (peaks) 2.2 MB
ENCFF324IWT.bigBed bigBed (peaks) 2.1 MB
ENCFF326QAR.bigWig bigWig (plus strand signal of unique reads) 14.2 MB
ENCFF383VVS.fastq fastq (reads) 170.4 MB
ENCFF399XVR.fastq fastq (reads) 219.6 MB
ENCFF431LLE.bed bed (peaks) 377.6 KB
ENCFF435MEM.bed bed (peaks) 1.3 MB
ENCFF449VXW.bam bam (alignments) 186.8 MB
ENCFF540OLV.bigWig bigWig (minus strand signal of unique reads) 13.7 MB
ENCFF544NQL.bam bam (alignments) 263.7 MB
ENCFF650LMV.bed bed (peaks) 128.6 KB
ENCFF677VOR.bigBed bigBed (peaks) 888.8 KB
ENCFF701YCW.bed bed (peaks) 1.0 MB
ENCFF726PXZ.bigWig bigWig (plus strand signal of unique reads) 12.1 MB
ENCFF733OIX.bigWig bigWig (plus strand signal of unique reads) 12.1 MB
ENCFF760CSI.bigBed bigBed (peaks) 4.2 MB
ENCFF792IKF.bigWig bigWig (minus strand signal of unique reads) 11.6 MB
ENCFF801TBQ.bed bed (peaks) 477.4 KB
ENCFF809JFX.bigBed bigBed (peaks) 3.4 MB
ENCFF810AIK.bigWig bigWig (plus strand signal of unique reads) 14.2 MB
ENCFF827GWO.bigBed bigBed (peaks) 2.2 MB
ENCFF853FGC.bed bed (peaks) 1.3 MB
ENCFF890VLH.bed bed (peaks) 127.2 KB
ENCFF956NTH.bam bam (alignments) 187.2 MB
ENCSR077KVG ENCSR · via encode_api

eCLIP control experiment on HepG2 against IGF2BP3

Homo sapiens

8 data files
FileTypeSize
ENCFF052DII.bigWig bigWig (plus strand signal of unique reads) 6.3 MB
ENCFF295AAK.bigWig bigWig (plus strand signal of unique reads) 6.3 MB
ENCFF401NKA.bigWig bigWig (minus strand signal of unique reads) 6.2 MB
ENCFF580DZG.bigWig bigWig (minus strand signal of unique reads) 6.1 MB
ENCFF655LHZ.bam bam (alignments) 149.9 MB
ENCFF742YFO.fastq fastq (reads) 299.8 MB
ENCFF843CUY.fastq fastq (reads) 295.4 MB
ENCFF983FIG.bam bam (alignments) 148.8 MB
ENCSR267UCX ENCSR · via encode_api

eCLIP experiment on HepG2 against HNRNPM

Homo sapiens

36 data files
FileTypeSize
ENCFF040JSC.bed bed (peaks) 2.4 MB
ENCFF058AGC.bigWig bigWig (plus strand signal of unique reads) 23.4 MB
ENCFF060XTP.bed bed (peaks) 697.3 KB
ENCFF079OKS.bed bed (peaks) 257.2 KB
ENCFF131SXQ.bigBed bigBed (peaks) 4.4 MB
ENCFF136GAI.fastq fastq (reads) 266.8 MB
ENCFF146ZKF.bigBed bigBed (peaks) 4.5 MB
ENCFF160MZO.bam bam (alignments) 366.0 MB
ENCFF165ISL.bigWig bigWig (plus strand signal of unique reads) 16.4 MB
ENCFF175VJO.bed bed (peaks) 1.7 MB
ENCFF219ZDF.bigBed bigBed (peaks) 2.5 MB
ENCFF225WNJ.bigBed bigBed (peaks) 599.7 KB
ENCFF243EVT.bigWig bigWig (plus strand signal of unique reads) 23.5 MB
ENCFF268GTW.bigBed bigBed (peaks) 1.5 MB
ENCFF324IMR.bigWig bigWig (minus strand signal of unique reads) 21.9 MB
ENCFF429MCF.bigWig bigWig (plus strand signal of unique reads) 16.4 MB
ENCFF433NXX.bigWig bigWig (minus strand signal of unique reads) 22.0 MB
ENCFF448EIC.bigBed bigBed (peaks) 3.3 MB
ENCFF450IJF.bam bam (alignments) 204.7 MB
ENCFF457CJG.bigBed bigBed (peaks) 2.9 MB
ENCFF501TRY.bed bed (peaks) 2.4 MB
ENCFF503KDE.fastq fastq (reads) 287.1 MB
ENCFF504DZY.bigBed bigBed (peaks) 3.3 MB
ENCFF524HTN.bigBed bigBed (peaks) 575.5 KB
ENCFF542FRX.bed bed (peaks) 1.7 MB
ENCFF600EOC.fastq fastq (reads) 269.5 MB
ENCFF633FLY.bam bam (alignments) 203.0 MB
ENCFF705MCO.bigWig bigWig (minus strand signal of unique reads) 15.6 MB
ENCFF746CAJ.bed bed (peaks) 259.6 KB
ENCFF752JNY.bed bed (peaks) 272.1 KB
ENCFF758BBB.bigWig bigWig (minus strand signal of unique reads) 15.5 MB
ENCFF776VVS.bigBed bigBed (peaks) 1.2 MB
ENCFF817WMP.fastq fastq (reads) 292.4 MB
ENCFF878JOG.bed bed (peaks) 267.9 KB
ENCFF950RRY.bam bam (alignments) 362.6 MB
ENCFF987WZB.bed bed (peaks) 655.4 KB
ENCSR062NNB ENCSR · via encode_api

eCLIP experiment on K562 against IGF2BP2

Homo sapiens

36 data files
FileTypeSize
ENCFF036HZN.bigBed bigBed (peaks) 992.5 KB
ENCFF082VUD.bed bed (peaks) 1.2 MB
ENCFF163DKK.bigWig bigWig (plus strand signal of unique reads) 11.1 MB
ENCFF185MFP.bed bed (peaks) 441.0 KB
ENCFF205TRW.bigBed bigBed (peaks) 2.4 MB
ENCFF264QIH.bigWig bigWig (plus strand signal of unique reads) 15.3 MB
ENCFF307AUO.fastq fastq (reads) 202.2 MB
ENCFF329EES.bigBed bigBed (peaks) 1.0 MB
ENCFF343SYH.bigBed bigBed (peaks) 3.9 MB
ENCFF343XCK.bed bed (peaks) 1.1 MB
ENCFF387BGM.bigBed bigBed (peaks) 2.4 MB
ENCFF414ZGV.bigBed bigBed (peaks) 2.2 MB
ENCFF416JIV.bigBed bigBed (peaks) 2.8 MB
ENCFF418NBV.fastq fastq (reads) 261.8 MB
ENCFF434VQE.bigWig bigWig (minus strand signal of unique reads) 10.6 MB
ENCFF446VVE.bam bam (alignments) 253.0 MB
ENCFF512QJT.bed bed (peaks) 1.4 MB
ENCFF524ZZB.bed bed (peaks) 88.9 KB
ENCFF543CKG.bed bed (peaks) 1.0 MB
ENCFF563WIX.fastq fastq (reads) 215.2 MB
ENCFF589JKO.bam bam (alignments) 189.6 MB
ENCFF616DQY.bigWig bigWig (plus strand signal of unique reads) 15.4 MB
ENCFF620LDH.bigBed bigBed (peaks) 2.0 MB
ENCFF631HDI.bigWig bigWig (plus strand signal of unique reads) 11.0 MB
ENCFF643OXD.fastq fastq (reads) 250.3 MB
ENCFF719CCI.bam bam (alignments) 191.8 MB
ENCFF742LFS.bigWig bigWig (minus strand signal of unique reads) 10.6 MB
ENCFF808IWD.bigWig bigWig (minus strand signal of unique reads) 14.7 MB
ENCFF832TMO.bigBed bigBed (peaks) 4.2 MB
ENCFF904VAH.bam bam (alignments) 250.3 MB
ENCFF922ZNQ.bigBed bigBed (peaks) 2.8 MB
ENCFF968WTB.bed bed (peaks) 1.2 MB
ENCFF976XUG.bed bed (peaks) 475.7 KB
ENCFF977MKB.bed bed (peaks) 88.3 KB
ENCFF988HSD.bed bed (peaks) 1.5 MB
ENCFF995HCK.bigWig bigWig (minus strand signal of unique reads) 14.7 MB
ENCSR052IYH ENCSR · via encode_api

shRNA knockdown against HNRNPC in HepG2 cells followed by RNA-seq. (HNRNPC-BGHLV20)

Homo sapiens

92 data files
FileTypeSize
ENCFF006AKN.bam bam (transcriptome alignments) 4.9 GB
ENCFF018UUC.bigWig bigWig (plus strand signal of unique reads) 73.3 MB
ENCFF030WNG.bigWig bigWig (minus strand signal of unique reads) 76.7 MB
ENCFF031QZG.bam bam (alignments) 3.7 GB
ENCFF046AXB.bigWig bigWig (plus strand signal of unique reads) 74.8 MB
ENCFF061LXB.bigWig bigWig (minus strand signal of all reads) 85.3 MB
ENCFF064QUI.tsv tsv (gene quantifications) 9.1 MB
ENCFF067WUA.bigWig bigWig (minus strand signal of all reads) 89.3 MB
ENCFF070GSF.bigWig bigWig (plus strand signal of all reads) 86.1 MB
ENCFF078KLK.fastq fastq (reads) 2.4 GB
ENCFF086IUO.bam bam (transcriptome alignments) 4.9 GB
ENCFF104NHQ.bigWig bigWig (minus strand signal of unique reads) 73.5 MB
ENCFF105PPG.tsv tsv (transcript quantifications) 25.3 MB
ENCFF112RHT.bigWig bigWig (minus strand signal of unique reads) 69.5 MB
ENCFF123DWI.bam bam (alignments) 3.7 GB
ENCFF131OWY.bam bam (alignments) 3.8 GB
ENCFF132FTR.tsv tsv (gene quantifications) 9.1 MB
ENCFF143QBH.bigWig bigWig (plus strand signal of unique reads) 71.1 MB
ENCFF164YUJ.bigWig bigWig (plus strand signal of unique reads) 75.4 MB
ENCFF178BRV.bigWig bigWig (plus strand signal of all reads) 80.9 MB
ENCFF181LSI.bam bam (alignments) 4.2 GB
ENCFF189NTS.bigWig bigWig (plus strand signal of all reads) 80.4 MB
ENCFF194CTD.bigWig bigWig (minus strand signal of all reads) 89.3 MB
ENCFF217AWW.bigWig bigWig (minus strand signal of all reads) 86.0 MB
ENCFF239YTN.bigWig bigWig (plus strand signal of unique reads) 69.8 MB
ENCFF244XJW.tar tar (differential splicing quantifications) 4.0 MB
ENCFF286LUU.bigWig bigWig (plus strand signal of unique reads) 78.3 MB
ENCFF291HKX.bigWig bigWig (minus strand signal of unique reads) 78.5 MB
ENCFF302RRN.bigWig bigWig (minus strand signal of unique reads) 68.3 MB
ENCFF312YEP.bigWig bigWig (plus strand signal of unique reads) 79.1 MB
ENCFF324LZE.bigWig bigWig (plus strand signal of unique reads) 75.2 MB
ENCFF327ZFW.tsv tsv (transcript quantifications) 27.4 MB
ENCFF333PPT.bigWig bigWig (minus strand signal of unique reads) 73.7 MB
ENCFF334VNW.tsv tsv (gene quantifications) 10.4 MB
ENCFF334YIN.bigWig bigWig (plus strand signal of all reads) 78.1 MB
ENCFF338IZF.tsv tsv (gene quantifications) 10.4 MB
ENCFF342XUF.tsv tsv (differential expression quantifications) 4.4 MB
ENCFF353EYV.bigWig bigWig (minus strand signal of all reads) 79.3 MB
ENCFF361LGV.bam bam (alignments) 4.5 GB
ENCFF381LFG.tar tar (differential splicing quantifications) 3.3 MB
ENCFF382RKS.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF427DHJ.bigWig bigWig (plus strand signal of unique reads) 80.0 MB
ENCFF430XYW.bigWig bigWig (minus strand signal of unique reads) 77.3 MB
ENCFF436PXG.bam bam (alignments) 4.4 GB
ENCFF458GOZ.bam bam (alignments) 3.8 GB
ENCFF466BOO.tsv tsv (transcript quantifications) 25.3 MB
ENCFF497PPO.bam bam (alignments) 4.3 GB
ENCFF512YHX.bam bam (alignments) 4.5 GB
ENCFF530UEU.tsv tsv (transcript quantifications) 29.8 MB
ENCFF531AUK.bam bam (alignments) 3.7 GB
ENCFF532WHC.bigWig bigWig (plus strand signal of unique reads) 79.4 MB
ENCFF553MRX.bigWig bigWig (minus strand signal of unique reads) 77.2 MB
ENCFF579XQU.bigWig bigWig (plus strand signal of all reads) 87.0 MB
ENCFF581PVJ.bigWig bigWig (minus strand signal of all reads) 73.1 MB
ENCFF584UCY.bigWig bigWig (minus strand signal of unique reads) 74.0 MB
ENCFF588YAG.bigWig bigWig (plus strand signal of unique reads) 78.9 MB
ENCFF590KAD.bam bam (alignments) 3.7 GB
ENCFF602AOO.tsv tsv (gene quantifications) 9.4 MB
ENCFF603RSP.bigWig bigWig (plus strand signal of all reads) 90.2 MB
ENCFF622QKD.bigWig bigWig (minus strand signal of unique reads) 77.7 MB
ENCFF625KAV.bigWig bigWig (minus strand signal of all reads) 79.6 MB
ENCFF638JWK.bigWig bigWig (plus strand signal of all reads) 89.2 MB
ENCFF656ORB.tsv tsv (transcript quantifications) 29.8 MB
ENCFF665XDK.bigWig bigWig (minus strand signal of all reads) 80.0 MB
ENCFF666RFZ.bigWig bigWig (plus strand signal of all reads) 74.3 MB
ENCFF682EBX.fastq fastq (reads) 2.4 GB
ENCFF693YEX.tsv tsv (transcript quantifications) 24.9 MB
ENCFF738FGA.tsv tsv (gene quantifications) 9.4 MB
ENCFF774LUZ.bam bam (transcriptome alignments) 5.1 GB
ENCFF778FIK.bigWig bigWig (minus strand signal of all reads) 85.9 MB
ENCFF781BUR.bigWig bigWig (plus strand signal of unique reads) 78.6 MB
ENCFF786KML.tsv tsv (differential expression quantifications) 2.0 MB
ENCFF790BVX.bigWig bigWig (minus strand signal of unique reads) 77.8 MB
ENCFF791ZJI.bigWig bigWig (plus strand signal of all reads) 87.0 MB
ENCFF801LSJ.fastq fastq (reads) 2.2 GB
ENCFF807GSQ.bigWig bigWig (minus strand signal of unique reads) 72.0 MB
ENCFF812QFQ.bam bam (transcriptome alignments) 5.1 GB
ENCFF820GXK.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF843FIQ.bam bam (transcriptome alignments) 5.5 GB
ENCFF847CYP.bigWig bigWig (plus strand signal of all reads) 75.3 MB
ENCFF857BUR.bigWig bigWig (plus strand signal of all reads) 80.6 MB
ENCFF857UFD.bigWig bigWig (minus strand signal of all reads) 77.1 MB
ENCFF868NDT.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF889ZIU.tsv tsv (transcript quantifications) 24.9 MB
ENCFF892GEZ.bigWig bigWig (minus strand signal of all reads) 74.3 MB
ENCFF900TZX.bigWig bigWig (minus strand signal of all reads) 88.5 MB
ENCFF901GRA.bigWig bigWig (plus strand signal of all reads) 90.2 MB
ENCFF959MLW.tsv tsv (transcript quantifications) 27.4 MB
ENCFF970UVV.fastq fastq (reads) 2.3 GB
ENCFF976HOQ.bam bam (transcriptome alignments) 5.7 GB
ENCFF977OXL.tar tar (differential splicing quantifications) 15.2 MB
ENCFF999EPJ.bam bam (alignments) 4.4 GB
ENCSR494UDF ENCSR · via encode_api

RNA-seq on K562 cells treated with an shRNA knockdown against DKC1. (DKC1_BGKLV32)

Homo sapiens

92 data files
FileTypeSize
ENCFF010IBG.bigWig bigWig (plus strand signal of all reads) 104.5 MB
ENCFF020RLC.bigWig bigWig (minus strand signal of unique reads) 92.1 MB
ENCFF024EIA.tsv tsv (gene quantifications) 9.1 MB
ENCFF025CJZ.tsv tsv (gene quantifications) 10.4 MB
ENCFF036XTC.bigWig bigWig (plus strand signal of all reads) 117.7 MB
ENCFF051ILL.bigWig bigWig (minus strand signal of all reads) 101.4 MB
ENCFF057VIY.tsv tsv (gene quantifications) 10.4 MB
ENCFF059JIA.bigWig bigWig (plus strand signal of all reads) 117.6 MB
ENCFF060HFZ.bigWig bigWig (plus strand signal of all reads) 106.2 MB
ENCFF074EAO.tsv tsv (gene quantifications) 9.5 MB
ENCFF085RWL.bam bam (transcriptome alignments) 7.4 GB
ENCFF089UIK.bam bam (alignments) 6.2 GB
ENCFF103MDZ.bam bam (transcriptome alignments) 8.4 GB
ENCFF154IZH.bam bam (transcriptome alignments) 8.3 GB
ENCFF184KPP.bigWig bigWig (plus strand signal of all reads) 114.1 MB
ENCFF187LQM.tsv tsv (differential expression quantifications) 4.4 MB
ENCFF217MQU.bigWig bigWig (plus strand signal of all reads) 92.1 MB
ENCFF239AOT.tsv tsv (differential expression quantifications) 1.8 MB
ENCFF242VJR.bigWig bigWig (minus strand signal of unique reads) 94.0 MB
ENCFF251CLE.bigWig bigWig (minus strand signal of unique reads) 102.2 MB
ENCFF261YTY.bigWig bigWig (plus strand signal of all reads) 94.9 MB
ENCFF266TUO.bigWig bigWig (minus strand signal of all reads) 112.4 MB
ENCFF269UJB.bigWig bigWig (minus strand signal of unique reads) 94.0 MB
ENCFF293JRR.tsv tsv (transcript quantifications) 27.5 MB
ENCFF300MII.bigWig bigWig (minus strand signal of unique reads) 102.4 MB
ENCFF310REE.bam bam (alignments) 5.2 GB
ENCFF318OFF.bigWig bigWig (minus strand signal of unique reads) 91.3 MB
ENCFF366WCT.fastq fastq (reads) 3.5 GB
ENCFF381JVE.tsv tsv (transcript quantifications) 25.4 MB
ENCFF401XOS.tar tar (differential splicing quantifications) 5.3 MB
ENCFF409LOJ.bam bam (alignments) 5.2 GB
ENCFF409MYS.bam bam (transcriptome alignments) 8.4 GB
ENCFF417JZM.tsv tsv (transcript quantifications) 24.9 MB
ENCFF429JLW.bigWig bigWig (minus strand signal of all reads) 90.3 MB
ENCFF437PSI.bigWig bigWig (plus strand signal of unique reads) 84.4 MB
ENCFF459KXY.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF463RHF.bam bam (alignments) 6.4 GB
ENCFF465BOU.fastq fastq (reads) 3.4 GB
ENCFF466NGN.bigWig bigWig (minus strand signal of all reads) 104.1 MB
ENCFF470FJM.bigWig bigWig (plus strand signal of all reads) 105.1 MB
ENCFF478VKM.bigWig bigWig (minus strand signal of all reads) 103.1 MB
ENCFF484EPC.bigWig bigWig (plus strand signal of all reads) 105.2 MB
ENCFF486CFB.bam bam (alignments) 5.7 GB
ENCFF488GKQ.bam bam (transcriptome alignments) 9.4 GB
ENCFF489ARX.bigWig bigWig (plus strand signal of unique reads) 94.1 MB
ENCFF542QIV.bigWig bigWig (minus strand signal of unique reads) 91.8 MB
ENCFF547KTT.tsv tsv (transcript quantifications) 29.9 MB
ENCFF547WOT.bigWig bigWig (minus strand signal of unique reads) 85.9 MB
ENCFF551KIR.bigWig bigWig (plus strand signal of all reads) 102.1 MB
ENCFF553OKJ.bam bam (alignments) 5.7 GB
ENCFF565LQE.fastq fastq (reads) 3.9 GB
ENCFF565SHD.bam bam (alignments) 5.8 GB
ENCFF576DFK.bigWig bigWig (plus strand signal of unique reads) 104.9 MB
ENCFF577XJQ.bigWig bigWig (minus strand signal of all reads) 100.2 MB
ENCFF585LGS.bigWig bigWig (plus strand signal of unique reads) 94.2 MB
ENCFF606EVW.bigWig bigWig (plus strand signal of unique reads) 103.7 MB
ENCFF633SHL.bigWig bigWig (plus strand signal of unique reads) 87.3 MB
ENCFF634VZF.bigWig bigWig (minus strand signal of unique reads) 85.4 MB
ENCFF649ZDD.bam bam (alignments) 7.0 GB
ENCFF661QHL.tsv tsv (transcript quantifications) 24.9 MB
ENCFF664OPX.bigWig bigWig (plus strand signal of unique reads) 96.6 MB
ENCFF672XWA.tar tar (differential splicing quantifications) 4.2 MB
ENCFF685NTW.bigWig bigWig (minus strand signal of all reads) 116.0 MB
ENCFF702YWY.tsv tsv (transcript quantifications) 27.4 MB
ENCFF725BRJ.bigWig bigWig (plus strand signal of all reads) 102.9 MB
ENCFF727WSZ.tsv tsv (gene quantifications) 9.1 MB
ENCFF731MDU.tsv tsv (differential expression quantifications) 5.5 MB
ENCFF740UYB.bam bam (alignments) 6.4 GB
ENCFF742OUA.tsv tsv (gene quantifications) 9.5 MB
ENCFF752CSE.bigWig bigWig (minus strand signal of unique reads) 91.8 MB
ENCFF782EWT.bigWig bigWig (plus strand signal of unique reads) 104.7 MB
ENCFF782JXD.bigWig bigWig (minus strand signal of all reads) 103.9 MB
ENCFF797UAZ.bigWig bigWig (minus strand signal of all reads) 103.8 MB
ENCFF809RHR.bam bam (transcriptome alignments) 7.5 GB
ENCFF814AZV.tsv tsv (transcript quantifications) 25.4 MB
ENCFF833WSD.bigWig bigWig (minus strand signal of all reads) 93.1 MB
ENCFF848ZWS.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF882VRR.bam bam (alignments) 7.1 GB
ENCFF883RBN.bigWig bigWig (plus strand signal of all reads) 93.1 MB
ENCFF890GWO.tar tar (differential splicing quantifications) 17.4 MB
ENCFF892CWD.bigWig bigWig (minus strand signal of unique reads) 101.0 MB
ENCFF925LBU.bam bam (alignments) 5.2 GB
ENCFF928LRA.tsv tsv (transcript quantifications) 29.9 MB
ENCFF932ZXP.bigWig bigWig (minus strand signal of all reads) 116.0 MB
ENCFF934UPL.bigWig bigWig (plus strand signal of unique reads) 88.1 MB
ENCFF942VKJ.bigWig bigWig (plus strand signal of unique reads) 94.4 MB
ENCFF949GMZ.bigWig bigWig (minus strand signal of all reads) 91.8 MB
ENCFF952QMS.bigWig bigWig (plus strand signal of unique reads) 93.3 MB
ENCFF970CTO.bigWig bigWig (minus strand signal of unique reads) 82.1 MB
ENCFF983CTL.fastq fastq (reads) 3.9 GB
ENCFF984MME.bam bam (alignments) 7.1 GB
ENCFF998ZZP.bigWig bigWig (plus strand signal of unique reads) 96.2 MB
ENCSR689MIY ENCSR · via encode_api

RNA-seq on HepG2 cells treated with an shRNA knockdown against UPF1. (UPF1_BGHLV33)

Homo sapiens

92 data files
FileTypeSize
ENCFF017JPP.tar tar (differential splicing quantifications) 4.3 MB
ENCFF055CEP.tsv tsv (gene quantifications) 9.5 MB
ENCFF063TDJ.bigWig bigWig (plus strand signal of all reads) 90.1 MB
ENCFF064ZEN.bigWig bigWig (minus strand signal of all reads) 80.7 MB
ENCFF072VWU.bam bam (alignments) 4.9 GB
ENCFF087CAQ.bigWig bigWig (plus strand signal of all reads) 82.8 MB
ENCFF098NOF.bam bam (alignments) 6.0 GB
ENCFF104IEN.bigWig bigWig (plus strand signal of unique reads) 75.6 MB
ENCFF127NLZ.bigWig bigWig (plus strand signal of unique reads) 81.8 MB
ENCFF129LBX.tar tar (differential splicing quantifications) 3.5 MB
ENCFF134RQW.bigWig bigWig (minus strand signal of all reads) 94.2 MB
ENCFF144IAO.bigWig bigWig (minus strand signal of unique reads) 85.3 MB
ENCFF167PXF.tsv tsv (transcript quantifications) 25.3 MB
ENCFF170PQB.bigWig bigWig (minus strand signal of unique reads) 79.4 MB
ENCFF188WNE.bigWig bigWig (plus strand signal of all reads) 91.0 MB
ENCFF197ZDN.bigWig bigWig (plus strand signal of unique reads) 78.9 MB
ENCFF209ZXB.bam bam (alignments) 5.3 GB
ENCFF217IQA.bigWig bigWig (minus strand signal of all reads) 86.3 MB
ENCFF228YQC.bam bam (transcriptome alignments) 7.0 GB
ENCFF236MMV.tsv tsv (gene quantifications) 9.5 MB
ENCFF246CVO.bigWig bigWig (plus strand signal of unique reads) 88.1 MB
ENCFF273ECG.bigWig bigWig (plus strand signal of unique reads) 88.0 MB
ENCFF279HCU.bigWig bigWig (minus strand signal of all reads) 89.2 MB
ENCFF296QCS.bigWig bigWig (minus strand signal of unique reads) 73.3 MB
ENCFF300LWC.bigWig bigWig (minus strand signal of all reads) 96.0 MB
ENCFF324UHV.bam bam (transcriptome alignments) 7.0 GB
ENCFF330PIL.bigWig bigWig (plus strand signal of unique reads) 72.6 MB
ENCFF334YUH.tsv tsv (gene quantifications) 10.4 MB
ENCFF337MNV.bam bam (transcriptome alignments) 6.2 GB
ENCFF365OHU.bigWig bigWig (minus strand signal of all reads) 96.0 MB
ENCFF368DFY.bigWig bigWig (plus strand signal of unique reads) 81.0 MB
ENCFF370YJL.bigWig bigWig (plus strand signal of all reads) 88.3 MB
ENCFF380DFJ.tsv tsv (transcript quantifications) 24.9 MB
ENCFF380SQG.bigWig bigWig (plus strand signal of all reads) 79.8 MB
ENCFF430MDC.fastq fastq (reads) 3.3 GB
ENCFF431IBZ.bam bam (transcriptome alignments) 7.9 GB
ENCFF436HGZ.bigWig bigWig (plus strand signal of unique reads) 88.0 MB
ENCFF444YJE.tsv tsv (differential expression quantifications) 4.4 MB
ENCFF467AHP.bigWig bigWig (plus strand signal of all reads) 98.0 MB
ENCFF471BWF.bam bam (transcriptome alignments) 7.0 GB
ENCFF484REW.bam bam (alignments) 4.3 GB
ENCFF485THF.tsv tsv (transcript quantifications) 29.8 MB
ENCFF499ESE.bigWig bigWig (minus strand signal of unique reads) 76.2 MB
ENCFF510YDA.tar tar (differential splicing quantifications) 16.7 MB
ENCFF535URV.bigWig bigWig (plus strand signal of all reads) 96.0 MB
ENCFF546SDQ.bigWig bigWig (plus strand signal of unique reads) 74.7 MB
ENCFF549TIA.fastq fastq (reads) 3.3 GB
ENCFF557HMQ.tsv tsv (differential expression quantifications) 2.0 MB
ENCFF559VVN.bigWig bigWig (minus strand signal of unique reads) 78.1 MB
ENCFF578QNC.bam bam (alignments) 4.9 GB
ENCFF578RLQ.bam bam (alignments) 4.4 GB
ENCFF582SYG.bigWig bigWig (minus strand signal of all reads) 78.2 MB
ENCFF594KDS.tsv tsv (transcript quantifications) 27.4 MB
ENCFF600FND.bam bam (transcriptome alignments) 6.2 GB
ENCFF603YXA.bigWig bigWig (plus strand signal of all reads) 81.6 MB
ENCFF606BMQ.tsv tsv (gene quantifications) 9.1 MB
ENCFF613JYH.tsv tsv (gene quantifications) 10.4 MB
ENCFF622YVY.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF660GZI.tsv tsv (transcript quantifications) 27.4 MB
ENCFF683MDE.bigWig bigWig (minus strand signal of unique reads) 85.4 MB
ENCFF691EYK.fastq fastq (reads) 2.9 GB
ENCFF706FIK.bigWig bigWig (minus strand signal of all reads) 79.7 MB
ENCFF730IKR.bam bam (alignments) 5.0 GB
ENCFF742JZG.bigWig bigWig (plus strand signal of unique reads) 81.2 MB
ENCFF745AQJ.tsv tsv (transcript quantifications) 24.9 MB
ENCFF747KMO.bigWig bigWig (minus strand signal of unique reads) 78.5 MB
ENCFF782WLK.bam bam (alignments) 5.3 GB
ENCFF801DCD.tsv tsv (differential expression quantifications) 3.0 MB
ENCFF806LYT.bigWig bigWig (minus strand signal of unique reads) 78.7 MB
ENCFF812BUW.bigWig bigWig (plus strand signal of all reads) 91.0 MB
ENCFF819BTX.bam bam (alignments) 5.1 GB
ENCFF821QBU.tsv tsv (gene quantifications) 9.1 MB
ENCFF823YNN.bigWig bigWig (minus strand signal of unique reads) 79.3 MB
ENCFF830LND.bigWig bigWig (plus strand signal of all reads) 78.5 MB
ENCFF850ORL.bam bam (alignments) 5.8 GB
ENCFF862KST.bigWig bigWig (plus strand signal of all reads) 98.0 MB
ENCFF863OXK.bigWig bigWig (minus strand signal of unique reads) 72.6 MB
ENCFF869VKJ.bigWig bigWig (minus strand signal of unique reads) 85.4 MB
ENCFF872FWJ.bigWig bigWig (plus strand signal of all reads) 85.9 MB
ENCFF907OVS.bigWig bigWig (minus strand signal of all reads) 76.5 MB
ENCFF923PAA.bigWig bigWig (minus strand signal of unique reads) 70.2 MB
ENCFF924NAA.tsv tsv (transcript quantifications) 25.3 MB
ENCFF941VQF.bigWig bigWig (minus strand signal of all reads) 88.4 MB
ENCFF946UUY.fastq fastq (reads) 2.9 GB
ENCFF946YXA.bam bam (alignments) 4.3 GB
ENCFF952BEP.bigWig bigWig (minus strand signal of all reads) 84.1 MB
ENCFF952MEO.bigWig bigWig (plus strand signal of unique reads) 81.7 MB
ENCFF956VHG.bigWig bigWig (minus strand signal of all reads) 89.2 MB
ENCFF957XDW.tsv tsv (transcript quantifications) 29.8 MB
ENCFF959WPL.bam bam (alignments) 6.0 GB
ENCFF976QWN.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF993OZW.bigWig bigWig (plus strand signal of unique reads) 80.4 MB
ENCSR602AWR ENCSR · via encode_api

RNA-seq on K562 cells treated with an shRNA knockdown against TUFM. (TUFM-BGKLV25)

Homo sapiens

92 data files
FileTypeSize
ENCFF023EGA.fastq fastq (reads) 1.8 GB
ENCFF024DKY.bam bam (transcriptome alignments) 4.8 GB
ENCFF033OVC.bigWig bigWig (plus strand signal of unique reads) 73.1 MB
ENCFF071QUC.bigWig bigWig (plus strand signal of all reads) 72.7 MB
ENCFF089KJF.bigWig bigWig (plus strand signal of unique reads) 72.3 MB
ENCFF090IIR.bigWig bigWig (minus strand signal of unique reads) 71.0 MB
ENCFF095LWO.bigWig bigWig (plus strand signal of all reads) 77.0 MB
ENCFF112VNX.bigWig bigWig (plus strand signal of unique reads) 67.2 MB
ENCFF122BBB.bam bam (alignments) 2.6 GB
ENCFF130ASM.tar tar (differential splicing quantifications) 5.6 MB
ENCFF132IOH.bam bam (alignments) 3.3 GB
ENCFF137VLC.tsv tsv (transcript quantifications) 25.3 MB
ENCFF155UAO.tsv tsv (transcript quantifications) 25.3 MB
ENCFF156INM.bigWig bigWig (minus strand signal of unique reads) 65.1 MB
ENCFF194PWE.tsv tsv (differential expression quantifications) 2.8 MB
ENCFF214QIS.bigWig bigWig (plus strand signal of all reads) 72.6 MB
ENCFF219BGO.bigWig bigWig (minus strand signal of unique reads) 67.8 MB
ENCFF220TRH.bigWig bigWig (plus strand signal of unique reads) 69.7 MB
ENCFF240OVG.bam bam (alignments) 3.3 GB
ENCFF292LMK.bam bam (transcriptome alignments) 4.1 GB
ENCFF311ZAZ.bigWig bigWig (plus strand signal of all reads) 74.4 MB
ENCFF317XWD.bigWig bigWig (minus strand signal of all reads) 81.0 MB
ENCFF325HAR.tsv tsv (gene quantifications) 9.1 MB
ENCFF341GJW.tsv tsv (gene quantifications) 9.4 MB
ENCFF351KDS.bigWig bigWig (minus strand signal of all reads) 81.0 MB
ENCFF357ICF.bigWig bigWig (plus strand signal of unique reads) 73.0 MB
ENCFF374QFS.bigWig bigWig (minus strand signal of all reads) 73.2 MB
ENCFF374WCV.bigWig bigWig (minus strand signal of all reads) 82.2 MB
ENCFF374ZRQ.fastq fastq (reads) 1.8 GB
ENCFF388CWH.tsv tsv (gene quantifications) 10.4 MB
ENCFF388FTI.tsv tsv (transcript quantifications) 27.3 MB
ENCFF392STX.bigWig bigWig (minus strand signal of all reads) 71.5 MB
ENCFF417VWB.bam bam (alignments) 2.6 GB
ENCFF420NEH.bigWig bigWig (minus strand signal of unique reads) 67.4 MB
ENCFF430UOH.bigWig bigWig (minus strand signal of all reads) 71.2 MB
ENCFF444HGN.tsv tsv (transcript quantifications) 24.9 MB
ENCFF447FHU.bigWig bigWig (minus strand signal of all reads) 79.1 MB
ENCFF450XJO.bigWig bigWig (minus strand signal of unique reads) 71.6 MB
ENCFF454GAT.bigWig bigWig (plus strand signal of unique reads) 73.2 MB
ENCFF461VEE.bigWig bigWig (plus strand signal of unique reads) 69.5 MB
ENCFF463KYP.tsv tsv (transcript quantifications) 24.9 MB
ENCFF464CND.bigWig bigWig (plus strand signal of all reads) 82.1 MB
ENCFF470URI.bigWig bigWig (minus strand signal of all reads) 80.6 MB
ENCFF486BWF.bigWig bigWig (plus strand signal of all reads) 82.1 MB
ENCFF495PDO.bam bam (transcriptome alignments) 4.2 GB
ENCFF505OPB.bigWig bigWig (minus strand signal of all reads) 74.5 MB
ENCFF509OKW.tsv tsv (gene quantifications) 9.1 MB
ENCFF517QND.bigWig bigWig (minus strand signal of unique reads) 69.2 MB
ENCFF524ZVH.tar tar (differential splicing quantifications) 4.7 MB
ENCFF540PXK.fastq fastq (reads) 1.8 GB
ENCFF570NQL.bam bam (alignments) 3.2 GB
ENCFF573KLR.bigWig bigWig (plus strand signal of unique reads) 67.0 MB
ENCFF587ACT.tsv tsv (differential expression quantifications) 4.2 MB
ENCFF613TYM.bigWig bigWig (minus strand signal of unique reads) 70.7 MB
ENCFF616IQM.tar tar (differential splicing quantifications) 16.4 MB
ENCFF621YAS.bigWig bigWig (plus strand signal of all reads) 75.9 MB
ENCFF634KQV.tsv tsv (differential expression quantifications) 1.8 MB
ENCFF652OBE.bigWig bigWig (minus strand signal of unique reads) 68.3 MB
ENCFF661POL.bigWig bigWig (plus strand signal of unique reads) 74.0 MB
ENCFF666SKO.bigWig bigWig (plus strand signal of all reads) 81.5 MB
ENCFF673LPM.bigWig bigWig (minus strand signal of all reads) 75.7 MB
ENCFF676KGP.bam bam (alignments) 3.2 GB
ENCFF696HYF.bam bam (alignments) 3.3 GB
ENCFF697FTJ.bigWig bigWig (minus strand signal of all reads) 82.2 MB
ENCFF711CAR.tsv tsv (transcript quantifications) 29.8 MB
ENCFF711QVA.bigWig bigWig (plus strand signal of unique reads) 72.7 MB
ENCFF713EYD.bigWig bigWig (minus strand signal of unique reads) 65.5 MB
ENCFF714BAR.bigWig bigWig (plus strand signal of all reads) 83.1 MB
ENCFF718AJS.bigWig bigWig (plus strand signal of unique reads) 71.0 MB
ENCFF743OYM.tsv tsv (transcript quantifications) 27.3 MB
ENCFF751PIX.bigWig bigWig (plus strand signal of unique reads) 68.8 MB
ENCFF761HSU.bigWig bigWig (minus strand signal of unique reads) 71.2 MB
ENCFF762PND.bam bam (alignments) 2.6 GB
ENCFF806IWG.bigWig bigWig (minus strand signal of all reads) 73.5 MB
ENCFF807HWY.bigWig bigWig (minus strand signal of unique reads) 72.4 MB
ENCFF808TZP.bigWig bigWig (plus strand signal of all reads) 74.0 MB
ENCFF813PRV.bam bam (alignments) 2.6 GB
ENCFF821FAN.tsv tsv (gene quantifications) 9.4 MB
ENCFF822USK.bigWig bigWig (plus strand signal of all reads) 80.2 MB
ENCFF828UDG.bam bam (alignments) 2.6 GB
ENCFF831RBR.tsv tsv (gene quantifications) 10.4 MB
ENCFF835MXS.bigWig bigWig (plus strand signal of all reads) 83.1 MB
ENCFF836CUN.bam bam (alignments) 2.7 GB
ENCFF836KBO.bam bam (transcriptome alignments) 4.2 GB
ENCFF874LUQ.fastq fastq (reads) 1.8 GB
ENCFF892IQQ.tsv tsv (differential expression quantifications) 2.0 MB
ENCFF914YJU.bigWig bigWig (minus strand signal of unique reads) 71.5 MB
ENCFF918ADC.tsv tsv (differential expression quantifications) 5.5 MB
ENCFF934GLE.bam bam (transcriptome alignments) 4.7 GB
ENCFF939CBP.bam bam (transcriptome alignments) 4.1 GB
ENCFF956IBX.bam bam (alignments) 3.3 GB
ENCFF996BQR.tsv tsv (transcript quantifications) 29.8 MB
ENCSR667PLJ ENCSR · via encode_api

Control shRNA against no target in K562 cells followed by RNA-seq. (non-target_BGKLV24)

Homo sapiens

84 data files
FileTypeSize
ENCFF007KKL.bigWig bigWig (plus strand signal of unique reads) 54.2 MB
ENCFF015IHM.tsv tsv (gene quantifications) 9.1 MB
ENCFF017JMT.bigWig bigWig (plus strand signal of all reads) 59.6 MB
ENCFF017MAM.bigWig bigWig (plus strand signal of unique reads) 51.0 MB
ENCFF079KVI.bigWig bigWig (plus strand signal of unique reads) 60.6 MB
ENCFF082RKH.bigWig bigWig (minus strand signal of unique reads) 59.2 MB
ENCFF087MDC.fastq fastq (reads) 1.3 GB
ENCFF096FXH.tsv tsv (gene quantifications) 10.4 MB
ENCFF096IBO.tsv tsv (gene quantifications) 10.4 MB
ENCFF117XMT.bigWig bigWig (plus strand signal of all reads) 66.2 MB
ENCFF119DIN.bigWig bigWig (minus strand signal of all reads) 61.0 MB
ENCFF122FYQ.fastq fastq (reads) 1.5 GB
ENCFF125PXK.bam bam (alignments) 2.2 GB
ENCFF134AJK.bigWig bigWig (minus strand signal of all reads) 65.3 MB
ENCFF140KPE.tsv tsv (gene quantifications) 9.1 MB
ENCFF151GVS.bigWig bigWig (minus strand signal of unique reads) 55.4 MB
ENCFF153RLI.bigWig bigWig (plus strand signal of all reads) 67.6 MB
ENCFF159DUP.bigWig bigWig (plus strand signal of unique reads) 57.1 MB
ENCFF162LWE.fastq fastq (reads) 1.7 GB
ENCFF174PJH.bigWig bigWig (minus strand signal of all reads) 66.8 MB
ENCFF179GNN.bigWig bigWig (plus strand signal of unique reads) 53.5 MB
ENCFF214SQV.bam bam (alignments) 2.5 GB
ENCFF229PIT.bigWig bigWig (minus strand signal of unique reads) 52.2 MB
ENCFF234UJB.bam bam (alignments) 2.2 GB
ENCFF258BWI.bigWig bigWig (minus strand signal of unique reads) 52.5 MB
ENCFF260CEW.bigWig bigWig (minus strand signal of unique reads) 55.6 MB
ENCFF267XFW.bigWig bigWig (plus strand signal of all reads) 55.0 MB
ENCFF272UDH.bigWig bigWig (plus strand signal of all reads) 54.5 MB
ENCFF292FBD.bigWig bigWig (minus strand signal of unique reads) 49.8 MB
ENCFF302RWW.bigWig bigWig (minus strand signal of unique reads) 58.7 MB
ENCFF305LMQ.tsv tsv (transcript quantifications) 25.3 MB
ENCFF315EYE.bigWig bigWig (plus strand signal of all reads) 60.7 MB
ENCFF322VBG.bigWig bigWig (minus strand signal of unique reads) 58.5 MB
ENCFF323UDR.bigWig bigWig (minus strand signal of unique reads) 46.7 MB
ENCFF345GEG.bam bam (transcriptome alignments) 3.0 GB
ENCFF374VOE.bigWig bigWig (minus strand signal of all reads) 58.8 MB
ENCFF379XJZ.bigWig bigWig (minus strand signal of all reads) 51.0 MB
ENCFF405YDU.bigWig bigWig (minus strand signal of unique reads) 52.2 MB
ENCFF432XKQ.bigWig bigWig (plus strand signal of unique reads) 54.0 MB
ENCFF437ZPD.bigWig bigWig (plus strand signal of all reads) 57.4 MB
ENCFF439DBK.bam bam (alignments) 2.6 GB
ENCFF439FIP.tsv tsv (gene quantifications) 9.4 MB
ENCFF449FTQ.bam bam (transcriptome alignments) 3.0 GB
ENCFF459MUF.tsv tsv (transcript quantifications) 24.9 MB
ENCFF461VKW.bigWig bigWig (minus strand signal of all reads) 53.8 MB
ENCFF464FLL.bigWig bigWig (minus strand signal of unique reads) 49.7 MB
ENCFF549AUI.bam bam (alignments) 3.0 GB
ENCFF554WDW.bam bam (alignments) 3.0 GB
ENCFF560FNU.bigWig bigWig (minus strand signal of all reads) 66.8 MB
ENCFF598FRA.bigWig bigWig (minus strand signal of all reads) 56.3 MB
ENCFF614DCM.bigWig bigWig (minus strand signal of unique reads) 52.9 MB
ENCFF614DYJ.bigWig bigWig (minus strand signal of all reads) 59.5 MB
ENCFF639OJN.bigWig bigWig (plus strand signal of unique reads) 60.2 MB
ENCFF645EBG.bigWig bigWig (plus strand signal of all reads) 62.1 MB
ENCFF655LMR.bigWig bigWig (plus strand signal of unique reads) 48.2 MB
ENCFF660SQX.bigWig bigWig (plus strand signal of all reads) 60.2 MB
ENCFF661FZP.bigWig bigWig (minus strand signal of all reads) 59.9 MB
ENCFF671YXY.tsv tsv (transcript quantifications) 27.2 MB
ENCFF678FMA.bam bam (alignments) 3.0 GB
ENCFF702OBZ.bigWig bigWig (plus strand signal of all reads) 67.6 MB
ENCFF702YIW.tsv tsv (gene quantifications) 9.4 MB
ENCFF711LIA.tsv tsv (transcript quantifications) 25.3 MB
ENCFF711ZTU.tsv tsv (transcript quantifications) 29.8 MB
ENCFF727PBZ.bigWig bigWig (plus strand signal of unique reads) 53.8 MB
ENCFF740UKE.bam bam (transcriptome alignments) 3.4 GB
ENCFF751NDH.tsv tsv (transcript quantifications) 27.3 MB
ENCFF761SAC.bam bam (alignments) 2.6 GB
ENCFF766CFJ.bam bam (transcriptome alignments) 3.5 GB
ENCFF804JHE.bam bam (alignments) 2.2 GB
ENCFF810TKP.bam bam (transcriptome alignments) 3.5 GB
ENCFF819ORB.bam bam (alignments) 2.5 GB
ENCFF823ZIM.bigWig bigWig (plus strand signal of all reads) 60.7 MB
ENCFF824UIO.bigWig bigWig (minus strand signal of all reads) 59.9 MB
ENCFF870RDO.bigWig bigWig (minus strand signal of all reads) 54.0 MB
ENCFF884KMN.bam bam (transcriptome alignments) 3.9 GB
ENCFF901DXT.bigWig bigWig (plus strand signal of unique reads) 56.7 MB
ENCFF910LWZ.tsv tsv (transcript quantifications) 29.8 MB
ENCFF911ABT.bam bam (alignments) 2.5 GB
ENCFF965KEL.bam bam (alignments) 2.5 GB
ENCFF966NPU.tsv tsv (transcript quantifications) 24.9 MB
ENCFF969UXI.bigWig bigWig (plus strand signal of all reads) 52.0 MB
ENCFF972DZJ.bigWig bigWig (plus strand signal of unique reads) 60.1 MB
ENCFF978NUA.bigWig bigWig (plus strand signal of unique reads) 51.0 MB
ENCFF981SWJ.fastq fastq (reads) 1.5 GB
ENCSR438NCK ENCSR · via encode_api

eCLIP control experiment on HepG2 against PTBP1

Homo sapiens

8 data files
FileTypeSize
ENCFF136NZL.bigWig bigWig (minus strand signal of unique reads) 21.5 MB
ENCFF302OCV.bigWig bigWig (plus strand signal of unique reads) 21.8 MB
ENCFF476HFB.bigWig bigWig (minus strand signal of unique reads) 22.0 MB
ENCFF556EQK.bigWig bigWig (plus strand signal of unique reads) 22.3 MB
ENCFF583UFX.fastq fastq (reads) 501.0 MB
ENCFF585EFC.fastq fastq (reads) 531.6 MB
ENCFF603FCS.bam bam (alignments) 495.0 MB
ENCFF895BNM.bam bam (alignments) 507.0 MB
ENCSR606PVX ENCSR · via encode_api

RNA-seq on HepG2 cells treated with a CRISPR gRNA against RBM5. (RBM5_BGHcLV05)

Homo sapiens

80 data files
FileTypeSize
ENCFF002GFN.bigWig bigWig (plus strand signal of unique reads) 23.8 MB
ENCFF040IZW.bigWig bigWig (minus strand signal of unique reads) 21.0 MB
ENCFF049JOG.tsv tsv (gene quantifications) 9.1 MB
ENCFF058JCY.bigWig bigWig (minus strand signal of all reads) 31.9 MB
ENCFF066JUR.bigWig bigWig (minus strand signal of unique reads) 20.2 MB
ENCFF096AMY.tsv tsv (differential expression quantifications) 1.8 MB
ENCFF110RZO.bigWig bigWig (minus strand signal of unique reads) 27.9 MB
ENCFF116AHT.tsv tsv (gene quantifications) 10.4 MB
ENCFF124ACD.bam bam (transcriptome alignments) 2.5 GB
ENCFF139HCH.bigWig bigWig (minus strand signal of unique reads) 32.3 MB
ENCFF145NIK.fastq fastq (reads) 1.1 GB
ENCFF147BRL.bigWig bigWig (minus strand signal of all reads) 23.0 MB
ENCFF151SKF.bam bam (alignments) 2.1 GB
ENCFF160QGU.bigWig bigWig (minus strand signal of unique reads) 23.3 MB
ENCFF174BIH.bigWig bigWig (minus strand signal of unique reads) 31.9 MB
ENCFF234QFF.bigWig bigWig (minus strand signal of unique reads) 29.6 MB
ENCFF238JPK.bigWig bigWig (minus strand signal of unique reads) 30.0 MB
ENCFF256ZBI.bam bam (transcriptome alignments) 1.9 GB
ENCFF262BIN.tar tar (differential splicing quantifications) 1.6 MB
ENCFF262PTV.bam bam (alignments) 1.8 GB
ENCFF264LLP.bam bam (alignments) 1.8 GB
ENCFF282ASN.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF288QSQ.bam bam (alignments) 1.7 GB
ENCFF293TJW.bigWig bigWig (minus strand signal of all reads) 30.5 MB
ENCFF295YEY.bam bam (transcriptome alignments) 2.5 GB
ENCFF348UHR.bigWig bigWig (plus strand signal of all reads) 22.4 MB
ENCFF361LZZ.bigWig bigWig (plus strand signal of unique reads) 30.7 MB
ENCFF384FGW.bigWig bigWig (minus strand signal of all reads) 26.5 MB
ENCFF392LDH.tsv tsv (transcript quantifications) 25.0 MB
ENCFF401DVW.bigWig bigWig (plus strand signal of all reads) 32.3 MB
ENCFF467NYT.fastq fastq (reads) 1.3 GB
ENCFF475KQW.bigWig bigWig (plus strand signal of unique reads) 32.5 MB
ENCFF485FVR.bam bam (alignments) 2.1 GB
ENCFF490ZFP.bam bam (alignments) 1.7 GB
ENCFF496MGL.tsv tsv (transcript quantifications) 25.0 MB
ENCFF498MBI.bigWig bigWig (plus strand signal of unique reads) 33.0 MB
ENCFF514CDT.fastq fastq (reads) 1.1 GB
ENCFF531EGC.tsv tsv (differential expression quantifications) 5.5 MB
ENCFF535GHS.tsv tsv (differential expression quantifications) 2.8 MB
ENCFF554TUL.bigWig bigWig (plus strand signal of all reads) 26.7 MB
ENCFF561ZVY.bigWig bigWig (minus strand signal of all reads) 23.5 MB
ENCFF583XAM.bigWig bigWig (plus strand signal of unique reads) 24.1 MB
ENCFF606GMX.bigWig bigWig (minus strand signal of all reads) 26.5 MB
ENCFF606UFX.bigWig bigWig (plus strand signal of all reads) 32.8 MB
ENCFF614LAF.bam bam (alignments) 1.8 GB
ENCFF622KCX.bigWig bigWig (minus strand signal of all reads) 36.6 MB
ENCFF635UYN.bam bam (transcriptome alignments) 2.9 GB
ENCFF652JLK.bigWig bigWig (plus strand signal of unique reads) 28.5 MB
ENCFF652RWB.bigWig bigWig (plus strand signal of unique reads) 21.9 MB
ENCFF661YJV.tsv tsv (transcript quantifications) 27.0 MB
ENCFF666DEF.bigWig bigWig (plus strand signal of all reads) 26.9 MB
ENCFF668DXC.bam bam (alignments) 1.7 GB
ENCFF681TAM.bigWig bigWig (plus strand signal of all reads) 31.0 MB
ENCFF686ARY.tsv tsv (transcript quantifications) 29.9 MB
ENCFF700LVJ.bigWig bigWig (plus strand signal of all reads) 23.3 MB
ENCFF762LQE.bigWig bigWig (plus strand signal of all reads) 36.7 MB
ENCFF770QEY.bigWig bigWig (plus strand signal of all reads) 37.0 MB
ENCFF787PUY.bam bam (transcriptome alignments) 1.9 GB
ENCFF798SYT.bam bam (alignments) 1.5 GB
ENCFF805DKZ.bigWig bigWig (plus strand signal of unique reads) 21.4 MB
ENCFF812DFT.bigWig bigWig (plus strand signal of unique reads) 20.6 MB
ENCFF821KNC.tsv tsv (gene quantifications) 10.4 MB
ENCFF828JUE.bigWig bigWig (minus strand signal of all reads) 32.4 MB
ENCFF831MOC.tsv tsv (transcript quantifications) 26.9 MB
ENCFF833HVE.tsv tsv (transcript quantifications) 29.9 MB
ENCFF836XRZ.tsv tsv (differential expression quantifications) 3.8 MB
ENCFF841QDR.bigWig bigWig (plus strand signal of unique reads) 30.2 MB
ENCFF844LTR.bam bam (transcriptome alignments) 2.2 GB
ENCFF875JRX.bam bam (alignments) 2.1 GB
ENCFF882BTE.tar tar (differential splicing quantifications) 7.7 MB
ENCFF883PAU.bigWig bigWig (minus strand signal of unique reads) 21.4 MB
ENCFF894PDB.bigWig bigWig (minus strand signal of all reads) 36.3 MB
ENCFF928ZTU.tsv tsv (gene quantifications) 9.1 MB
ENCFF930ZRF.tar tar (differential splicing quantifications) 1.8 MB
ENCFF934JKB.bam bam (alignments) 1.4 GB
ENCFF935ISL.bam bam (alignments) 1.4 GB
ENCFF941YDD.bigWig bigWig (plus strand signal of all reads) 23.8 MB
ENCFF951XEO.bigWig bigWig (minus strand signal of all reads) 22.0 MB
ENCFF972IWN.fastq fastq (reads) 1.3 GB
ENCFF998VNB.bigWig bigWig (minus strand signal of unique reads) 23.6 MB
ENCSR376RJN ENCSR · via encode_api

Control shRNA against no target in HepG2 cells followed by RNA-seq. (NT-BGHLV12-a-b)

Homo sapiens

84 data files
FileTypeSize
ENCFF003GVC.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 48.5 MB
ENCFF022OAE.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 25.0 MB
ENCFF027CRR.bam bam (alignments); assembly: GRCh38; genome annotation: V24 2.9 GB
ENCFF053KCC.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 48.6 MB
ENCFF054FSD.fastq fastq (reads) 2.5 GB
ENCFF069SFX.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 55.2 MB
ENCFF077PSM.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 61.4 MB
ENCFF092ERG.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 44.7 MB
ENCFF108BCB.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 47.3 MB
ENCFF116ECE.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.9 MB
ENCFF122WHV.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 46.4 MB
ENCFF145DFH.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF146VRN.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF151TDH.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 56.2 MB
ENCFF179HYA.bam bam (alignments); assembly: GRCh38; genome annotation: V29 4.7 GB
ENCFF188PZL.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF189FDA.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 52.4 MB
ENCFF196RIZ.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 52.4 MB
ENCFF222QRV.bam bam (alignments); assembly: hg19; genome annotation: V19 2.9 GB
ENCFF244EPC.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 56.9 MB
ENCFF248TCR.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 57.4 MB
ENCFF263FAP.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 46.6 MB
ENCFF263MGM.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 54.9 MB
ENCFF270VYW.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 48.3 MB
ENCFF290RHR.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 55.3 MB
ENCFF308BIR.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.4 MB
ENCFF310UVX.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 53.9 MB
ENCFF320KOZ.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 55.5 MB
ENCFF324RSB.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 45.4 MB
ENCFF342YJO.fastq fastq (reads) 2.7 GB
ENCFF354NBA.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 52.8 MB
ENCFF367WRS.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 45.9 MB
ENCFF393PNL.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 56.4 MB
ENCFF404JMM.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 56.7 MB
ENCFF435FCA.bam bam (alignments); assembly: hg19; genome annotation: V19 4.0 GB
ENCFF436DSE.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 53.7 MB
ENCFF451UHO.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 6.3 GB
ENCFF484LLL.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 62.0 MB
ENCFF490IFV.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 62.0 MB
ENCFF496IBR.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.2 MB
ENCFF529EUH.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 47.2 MB
ENCFF529NFU.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 48.4 MB
ENCFF535HJB.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 4.6 GB
ENCFF536YLM.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 53.2 MB
ENCFF537SJV.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF539HTU.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 60.6 MB
ENCFF541VUY.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 7.0 GB
ENCFF587TVG.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.2 MB
ENCFF594UKJ.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 52.1 MB
ENCFF610PZS.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 47.0 MB
ENCFF620XBC.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 48.6 MB
ENCFF622SSW.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 5.1 GB
ENCFF632HPX.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 60.6 MB
ENCFF636CZX.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.4 GB
ENCFF645CDE.bam bam (alignments); assembly: hg19; genome annotation: V19 2.9 GB
ENCFF664HAQ.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF672PFW.bam bam (alignments); assembly: hg19; genome annotation: V19 3.9 GB
ENCFF689UDH.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF690EJQ.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 45.1 MB
ENCFF707CVK.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 47.9 MB
ENCFF718LIT.bam bam (alignments); assembly: hg19; genome annotation: V19 4.6 GB
ENCFF722CAD.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.5 MB
ENCFF730MLU.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 60.3 MB
ENCFF735WWY.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 47.5 MB
ENCFF737ISE.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.7 GB
ENCFF740UQE.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 53.6 MB
ENCFF741RCO.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 52.6 MB
ENCFF752KRH.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 43.9 MB
ENCFF761DDF.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.0 GB
ENCFF765SVU.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 51.7 MB
ENCFF803UDC.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF812HDU.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 56.4 MB
ENCFF819IBN.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 55.5 MB
ENCFF822VTP.fastq fastq (reads) 1.9 GB
ENCFF832AAM.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 47.2 MB
ENCFF852NZY.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 51.6 MB
ENCFF866GIF.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 6.3 GB
ENCFF873HGJ.bam bam (alignments); assembly: GRCh38; genome annotation: V29 3.4 GB
ENCFF901ECG.fastq fastq (reads) 1.8 GB
ENCFF926DGG.bam bam (alignments); assembly: hg19; genome annotation: V19 3.4 GB
ENCFF963QBZ.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 53.7 MB
ENCFF974TLL.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF988AFN.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 57.0 MB
ENCFF991ITF.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 4.6 GB
ENCSR167ZZB ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) pulldown experiment against SNRPA

13 data files
FileTypeSize
ENCFF090VNK.tsv tsv (enrichment) 41.0 KB
ENCFF169FUR.fastq fastq (reads) 416.0 MB
ENCFF227ZZK.tsv tsv (library fraction) 64.3 KB
ENCFF262FUP.tsv tsv (library fraction) 15.4 KB
ENCFF279HZP.fastq fastq (reads) 486.1 MB
ENCFF349ZGB.tsv tsv (enrichment) 10.0 KB
ENCFF625QSH.tsv tsv (enrichment) 168.0 KB
ENCFF658HXU.fastq fastq (reads) 456.9 MB
ENCFF729AXE.fastq fastq (reads) 647.6 MB
ENCFF818QHZ.fastq fastq (reads) 451.7 MB
ENCFF890AXZ.tsv tsv (enrichment) 688.1 KB
ENCFF958UPV.tsv tsv (library fraction) 1.1 MB
ENCFF982SDF.tsv tsv (library fraction) 265.0 KB
ENCSR102MQN ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) pulldown experiment against NUPL2

15 data files
FileTypeSize
ENCFF143HKO.fastq fastq (reads) 370.6 MB
ENCFF157IWY.tsv tsv (enrichment) 239.0 B
ENCFF174KHL.fastq fastq (reads) 456.2 MB
ENCFF303FLJ.tsv tsv (library fraction) 264.8 KB
ENCFF413EHO.tsv tsv (library fraction) 64.3 KB
ENCFF452SPV.fastq fastq (reads) 391.5 MB
ENCFF497QML.tsv tsv (enrichment) 688.0 KB
ENCFF539CUI.tsv tsv (enrichment) 462.0 B
ENCFF558MQD.fastq fastq (reads) 376.8 MB
ENCFF617KGP.tsv tsv (enrichment) 166.1 KB
ENCFF679OPD.tsv tsv (library fraction) 15.5 KB
ENCFF718QMF.tsv tsv (enrichment) 40.7 KB
ENCFF787TMW.tsv tsv (enrichment) 10.0 KB
ENCFF798MYY.tsv tsv (library fraction) 1.1 MB
ENCFF967YLZ.fastq fastq (reads) 439.2 MB
ENCSR960MSV ENCSR · via encode_api

Control shRNA against no target in HepG2 cells followed by RNA-seq. (NT_BGHLV27B)

Homo sapiens

84 data files
FileTypeSize
ENCFF002UEN.bigWig bigWig (plus strand signal of unique reads) 66.9 MB
ENCFF006VDC.bigWig bigWig (plus strand signal of all reads) 74.0 MB
ENCFF021BCS.bam bam (alignments) 6.7 GB
ENCFF024HPK.bigWig bigWig (minus strand signal of unique reads) 64.5 MB
ENCFF059NIV.bigWig bigWig (minus strand signal of unique reads) 67.3 MB
ENCFF059YQC.bigWig bigWig (plus strand signal of all reads) 87.7 MB
ENCFF064KOD.bigWig bigWig (plus strand signal of all reads) 70.5 MB
ENCFF077JIF.bigWig bigWig (minus strand signal of all reads) 88.3 MB
ENCFF078HZX.bigWig bigWig (minus strand signal of all reads) 72.7 MB
ENCFF090TXL.bigWig bigWig (plus strand signal of unique reads) 65.6 MB
ENCFF095BKV.bigWig bigWig (plus strand signal of all reads) 89.7 MB
ENCFF103YKH.tsv tsv (gene quantifications) 10.4 MB
ENCFF108MZM.bam bam (alignments) 5.7 GB
ENCFF122QTF.bam bam (transcriptome alignments) 7.9 GB
ENCFF215HIX.bam bam (alignments) 7.0 GB
ENCFF221KUR.bigWig bigWig (minus strand signal of unique reads) 78.4 MB
ENCFF238PHX.tsv tsv (transcript quantifications) 27.4 MB
ENCFF244IGH.bigWig bigWig (minus strand signal of unique reads) 66.1 MB
ENCFF264STY.bigWig bigWig (plus strand signal of unique reads) 80.2 MB
ENCFF290IWR.tsv tsv (gene quantifications) 9.5 MB
ENCFF294RAG.bigWig bigWig (plus strand signal of all reads) 89.7 MB
ENCFF297XUD.fastq fastq (reads) 3.5 GB
ENCFF301YCP.tsv tsv (transcript quantifications) 25.4 MB
ENCFF325WDX.bigWig bigWig (minus strand signal of all reads) 89.6 MB
ENCFF331ECO.bigWig bigWig (minus strand signal of all reads) 69.5 MB
ENCFF337XTF.bam bam (alignments) 5.6 GB
ENCFF354FPG.bigWig bigWig (plus strand signal of unique reads) 80.2 MB
ENCFF367VFI.bigWig bigWig (minus strand signal of unique reads) 78.7 MB
ENCFF367YFE.bam bam (transcriptome alignments) 7.0 GB
ENCFF369LON.tsv tsv (gene quantifications) 9.1 MB
ENCFF385NJI.tsv tsv (transcript quantifications) 25.0 MB
ENCFF385TFD.bigWig bigWig (plus strand signal of all reads) 88.9 MB
ENCFF387NMJ.bigWig bigWig (plus strand signal of all reads) 73.5 MB
ENCFF387PGU.fastq fastq (reads) 3.6 GB
ENCFF427NTF.bam bam (alignments) 7.0 GB
ENCFF434DTX.bigWig bigWig (minus strand signal of all reads) 88.9 MB
ENCFF446SWV.bigWig bigWig (plus strand signal of all reads) 71.5 MB
ENCFF491RIR.bigWig bigWig (minus strand signal of all reads) 70.6 MB
ENCFF521EBU.bigWig bigWig (minus strand signal of all reads) 73.0 MB
ENCFF538LPS.bigWig bigWig (minus strand signal of all reads) 89.7 MB
ENCFF553IUL.bigWig bigWig (minus strand signal of all reads) 88.9 MB
ENCFF554WIV.bigWig bigWig (minus strand signal of unique reads) 78.7 MB
ENCFF557XPL.bigWig bigWig (plus strand signal of unique reads) 79.9 MB
ENCFF567ZEV.bigWig bigWig (minus strand signal of unique reads) 68.2 MB
ENCFF574LOI.bigWig bigWig (minus strand signal of all reads) 72.5 MB
ENCFF581RPI.bigWig bigWig (minus strand signal of unique reads) 77.9 MB
ENCFF583ZGU.bigWig bigWig (plus strand signal of all reads) 90.5 MB
ENCFF599EEC.bigWig bigWig (minus strand signal of unique reads) 78.7 MB
ENCFF611WGJ.bam bam (alignments) 5.7 GB
ENCFF616JDF.bigWig bigWig (minus strand signal of all reads) 70.9 MB
ENCFF619COW.fastq fastq (reads) 3.5 GB
ENCFF633TMR.tsv tsv (gene quantifications) 9.1 MB
ENCFF643BCC.bam bam (transcriptome alignments) 7.8 GB
ENCFF643ZNQ.tsv tsv (gene quantifications) 10.4 MB
ENCFF645BDQ.bigWig bigWig (plus strand signal of unique reads) 79.3 MB
ENCFF658SBR.bigWig bigWig (plus strand signal of unique reads) 79.3 MB
ENCFF659RGG.bigWig bigWig (plus strand signal of unique reads) 67.3 MB
ENCFF667VRG.bigWig bigWig (minus strand signal of unique reads) 77.9 MB
ENCFF674YJU.tsv tsv (transcript quantifications) 29.9 MB
ENCFF683RDT.bigWig bigWig (plus strand signal of unique reads) 65.8 MB
ENCFF688UBN.tsv tsv (gene quantifications) 9.5 MB
ENCFF697YDX.tsv tsv (transcript quantifications) 27.4 MB
ENCFF710RCY.bigWig bigWig (plus strand signal of unique reads) 80.1 MB
ENCFF716LGV.tsv tsv (transcript quantifications) 29.8 MB
ENCFF722VWP.bam bam (alignments) 6.8 GB
ENCFF741ORW.bam bam (alignments) 5.8 GB
ENCFF762FFH.bam bam (alignments) 6.6 GB
ENCFF763WIH.bigWig bigWig (plus strand signal of all reads) 90.5 MB
ENCFF793JLC.bam bam (transcriptome alignments) 7.1 GB
ENCFF798LVC.bigWig bigWig (plus strand signal of unique reads) 69.6 MB
ENCFF803KIO.bigWig bigWig (minus strand signal of unique reads) 64.2 MB
ENCFF822ZSP.bigWig bigWig (plus strand signal of unique reads) 68.5 MB
ENCFF829WXM.bigWig bigWig (plus strand signal of all reads) 71.9 MB
ENCFF854EKA.bam bam (alignments) 5.5 GB
ENCFF854TIL.bam bam (transcriptome alignments) 7.0 GB
ENCFF855RGY.bam bam (transcriptome alignments) 7.1 GB
ENCFF876OZA.tsv tsv (transcript quantifications) 25.0 MB
ENCFF888WPC.bam bam (alignments) 5.5 GB
ENCFF929TLK.bigWig bigWig (minus strand signal of all reads) 87.1 MB
ENCFF930QEL.tsv tsv (transcript quantifications) 25.3 MB
ENCFF942XPX.bam bam (alignments) 6.8 GB
ENCFF953ERF.bigWig bigWig (plus strand signal of all reads) 73.5 MB
ENCFF954QVN.bigWig bigWig (minus strand signal of unique reads) 65.5 MB
ENCFF992STH.fastq fastq (reads) 3.6 GB
ENCSR043GXN ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) input control experiment of ZNF326

1 data file
FileTypeSize
ENCFF505ATJ.fastq fastq (reads) 333.4 MB
ENCSR721BBI ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) mock pulldown control experiment of RBM47

1 data file
FileTypeSize
ENCFF654ZXW.fastq fastq (reads) 626.1 MB
ENCSR859PUB ENCSR · via encode_api

eCLIP control experiment on HepG2 against SF3A3

Homo sapiens

8 data files
FileTypeSize
ENCFF029QFY.bigWig bigWig (minus strand signal of unique reads) 30.4 MB
ENCFF037LUF.bam bam (alignments) 733.3 MB
ENCFF060XZQ.bigWig bigWig (minus strand signal of unique reads) 31.1 MB
ENCFF068IUX.bigWig bigWig (plus strand signal of unique reads) 31.2 MB
ENCFF337AFM.fastq fastq (reads) 784.4 MB
ENCFF370RMU.fastq fastq (reads) 697.7 MB
ENCFF514RHC.bam bam (alignments) 718.9 MB
ENCFF542KNE.bigWig bigWig (plus strand signal of unique reads) 31.9 MB
ENCSR143COQ ENCSR · via encode_api

Control shRNA against no target in K562 cells followed by RNA-seq. (NT_BGKLV32B)

Homo sapiens

84 data files
FileTypeSize
ENCFF018IZI.bigWig bigWig (plus strand signal of all reads) 158.5 MB
ENCFF034YPU.bigWig bigWig (plus strand signal of unique reads) 124.8 MB
ENCFF049GSC.bigWig bigWig (plus strand signal of all reads) 120.9 MB
ENCFF064NWU.bigWig bigWig (plus strand signal of unique reads) 109.0 MB
ENCFF071FXB.bigWig bigWig (minus strand signal of unique reads) 121.7 MB
ENCFF084ZDR.tsv tsv (gene quantifications) 9.5 MB
ENCFF092HMS.tsv tsv (transcript quantifications) 29.8 MB
ENCFF092MLC.bigWig bigWig (minus strand signal of unique reads) 135.5 MB
ENCFF095ZAS.bam bam (alignments) 10.8 GB
ENCFF138YKP.bigWig bigWig (plus strand signal of all reads) 137.0 MB
ENCFF141CHY.bigWig bigWig (minus strand signal of all reads) 121.4 MB
ENCFF156BHB.bigWig bigWig (plus strand signal of unique reads) 108.4 MB
ENCFF156YYO.bigWig bigWig (minus strand signal of all reads) 106.1 MB
ENCFF157LEU.tsv tsv (gene quantifications) 10.4 MB
ENCFF160WAF.fastq fastq (reads) 3.4 GB
ENCFF178EMZ.bigWig bigWig (minus strand signal of unique reads) 94.3 MB
ENCFF204WYA.bigWig bigWig (minus strand signal of unique reads) 136.2 MB
ENCFF221UUT.bam bam (alignments) 10.5 GB
ENCFF239RNR.bigWig bigWig (minus strand signal of unique reads) 98.3 MB
ENCFF250QPR.tsv tsv (transcript quantifications) 25.3 MB
ENCFF272EMZ.bigWig bigWig (plus strand signal of all reads) 122.6 MB
ENCFF276CCM.bigWig bigWig (minus strand signal of all reads) 119.5 MB
ENCFF337JKK.tsv tsv (transcript quantifications) 24.9 MB
ENCFF349VCZ.bigWig bigWig (plus strand signal of unique reads) 139.0 MB
ENCFF355RHO.bigWig bigWig (minus strand signal of all reads) 156.9 MB
ENCFF364AXQ.bigWig bigWig (plus strand signal of all reads) 122.6 MB
ENCFF366VXK.bigWig bigWig (plus strand signal of unique reads) 99.6 MB
ENCFF382RKZ.bigWig bigWig (plus strand signal of unique reads) 139.4 MB
ENCFF400RTX.tsv tsv (gene quantifications) 9.1 MB
ENCFF412QOH.bam bam (alignments) 6.6 GB
ENCFF414GEB.tsv tsv (gene quantifications) 10.4 MB
ENCFF415PUS.tsv tsv (transcript quantifications) 24.9 MB
ENCFF435GKQ.tsv tsv (transcript quantifications) 25.4 MB
ENCFF474DQR.bigWig bigWig (plus strand signal of unique reads) 126.8 MB
ENCFF491PUJ.bigWig bigWig (plus strand signal of all reads) 155.0 MB
ENCFF496RXN.fastq fastq (reads) 5.7 GB
ENCFF510BDY.bigWig bigWig (minus strand signal of unique reads) 106.4 MB
ENCFF525FUJ.bigWig bigWig (minus strand signal of all reads) 135.5 MB
ENCFF527WYJ.bigWig bigWig (minus strand signal of all reads) 135.4 MB
ENCFF535XBX.bigWig bigWig (plus strand signal of unique reads) 109.0 MB
ENCFF538NBM.bam bam (transcriptome alignments) 7.1 GB
ENCFF559FOI.bigWig bigWig (minus strand signal of unique reads) 126.4 MB
ENCFF574BIQ.bam bam (transcriptome alignments) 13.2 GB
ENCFF586FDO.bam bam (alignments) 8.6 GB
ENCFF596SIA.bam bam (transcriptome alignments) 8.1 GB
ENCFF623URV.tsv tsv (gene quantifications) 9.1 MB
ENCFF633BSJ.bigWig bigWig (minus strand signal of all reads) 138.2 MB
ENCFF642ZUQ.tsv tsv (transcript quantifications) 29.9 MB
ENCFF650FXK.bigWig bigWig (plus strand signal of unique reads) 138.2 MB
ENCFF661XWL.bam bam (alignments) 5.3 GB
ENCFF671TGF.bigWig bigWig (plus strand signal of all reads) 109.3 MB
ENCFF681TDS.bigWig bigWig (plus strand signal of all reads) 158.5 MB
ENCFF682YLE.fastq fastq (reads) 3.5 GB
ENCFF695KEA.bam bam (alignments) 8.7 GB
ENCFF700BBE.bam bam (transcriptome alignments) 11.7 GB
ENCFF713YLH.bam bam (alignments) 6.4 GB
ENCFF723KYL.bigWig bigWig (plus strand signal of all reads) 137.9 MB
ENCFF727LON.bigWig bigWig (minus strand signal of all reads) 121.4 MB
ENCFF736PRG.bigWig bigWig (minus strand signal of unique reads) 136.3 MB
ENCFF771GYM.bigWig bigWig (minus strand signal of all reads) 104.3 MB
ENCFF782JJL.bam bam (alignments) 6.6 GB
ENCFF795RPS.bigWig bigWig (plus strand signal of unique reads) 129.5 MB
ENCFF797DTM.bam bam (transcriptome alignments) 7.1 GB
ENCFF817CZT.tsv tsv (gene quantifications) 9.5 MB
ENCFF828TWZ.bigWig bigWig (plus strand signal of all reads) 107.4 MB
ENCFF836JSO.bigWig bigWig (minus strand signal of all reads) 156.9 MB
ENCFF840FHP.bigWig bigWig (minus strand signal of unique reads) 106.1 MB
ENCFF841CGU.bigWig bigWig (plus strand signal of unique reads) 96.8 MB
ENCFF848JJM.bam bam (alignments) 5.3 GB
ENCFF851RMM.bigWig bigWig (minus strand signal of unique reads) 97.5 MB
ENCFF865MIT.fastq fastq (reads) 5.8 GB
ENCFF886UNR.bam bam (transcriptome alignments) 11.6 GB
ENCFF902JOA.bigWig bigWig (minus strand signal of unique reads) 124.2 MB
ENCFF908NQP.bigWig bigWig (minus strand signal of all reads) 153.3 MB
ENCFF917YWX.bam bam (alignments) 8.8 GB
ENCFF923MPF.bam bam (alignments) 5.4 GB
ENCFF926GXN.tsv tsv (transcript quantifications) 27.5 MB
ENCFF936BWK.bam bam (alignments) 10.8 GB
ENCFF962JXV.bigWig bigWig (minus strand signal of all reads) 107.4 MB
ENCFF969VXX.tsv tsv (transcript quantifications) 27.6 MB
ENCFF980IUV.bigWig bigWig (plus strand signal of all reads) 106.2 MB
ENCFF986CGX.bigWig bigWig (minus strand signal of unique reads) 106.7 MB
ENCFF993BBX.bigWig bigWig (plus strand signal of all reads) 140.5 MB
ENCFF994EXO.bigWig bigWig (plus strand signal of unique reads) 100.8 MB
ENCSR335JQK ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) pulldown experiment against ZNF326

15 data files
FileTypeSize
ENCFF083AMW.tsv tsv (enrichment) 285.0 B
ENCFF139RKR.tsv tsv (enrichment) 10.0 KB
ENCFF223SKN.tsv tsv (library fraction) 1.1 MB
ENCFF285RAU.tsv tsv (library fraction) 64.0 KB
ENCFF325OGD.fastq fastq (reads) 495.8 MB
ENCFF398TUH.fastq fastq (reads) 436.0 MB
ENCFF412ANC.tsv tsv (enrichment) 109.0 B
ENCFF425QVN.tsv tsv (enrichment) 688.0 KB
ENCFF435XHG.tsv tsv (library fraction) 15.2 KB
ENCFF679WSU.fastq fastq (reads) 330.9 MB
ENCFF730GYB.fastq fastq (reads) 443.0 MB
ENCFF743RCD.fastq fastq (reads) 388.3 MB
ENCFF891JJG.tsv tsv (enrichment) 168.0 KB
ENCFF900EAZ.tsv tsv (library fraction) 265.1 KB
ENCFF982MXY.tsv tsv (enrichment) 41.0 KB
ENCSR224KSF ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) pulldown experiment against RBMS3

12 data files
FileTypeSize
ENCFF050HBK.tsv tsv (library fraction) 217.6 KB
ENCFF111GEB.tsv tsv (enrichment) 576.0 KB
ENCFF159XZR.fastq fastq (reads) 334.5 MB
ENCFF160IZO.tsv tsv (library fraction) 12.6 KB
ENCFF270MEX.fastq fastq (reads) 1.1 GB
ENCFF296APU.fastq fastq (reads) 385.4 MB
ENCFF489KTM.tsv tsv (library fraction) 888.4 KB
ENCFF491LXQ.tsv tsv (enrichment) 8.3 KB
ENCFF560ONY.tsv tsv (enrichment) 140.0 KB
ENCFF615JNZ.tsv tsv (enrichment) 34.0 KB
ENCFF815HRK.fastq fastq (reads) 429.7 MB
ENCFF885YQC.tsv tsv (library fraction) 52.7 KB
ENCSR487EUV ENCSR · via encode_api

eCLIP control experiment on K562 against NONO

Homo sapiens

8 data files
FileTypeSize
ENCFF046AJZ.bigWig bigWig (minus strand signal of unique reads) 19.5 MB
ENCFF187ARS.bigWig bigWig (plus strand signal of unique reads) 20.5 MB
ENCFF347ECS.bam bam (alignments) 438.1 MB
ENCFF399ONM.fastq fastq (reads) 577.4 MB
ENCFF421XRO.bigWig bigWig (minus strand signal of unique reads) 19.9 MB
ENCFF608XVX.fastq fastq (reads) 518.1 MB
ENCFF627ZLQ.bigWig bigWig (plus strand signal of unique reads) 20.2 MB
ENCFF701APQ.bam bam (alignments) 445.0 MB
ENCSR424VRD ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) input control experiment of UNK

1 data file
FileTypeSize
ENCFF385XEF.fastq fastq (reads) 575.5 MB
ENCSR812PBU ENCSR · via encode_api

eCLIP control experiment on K562 against YWHAG

Homo sapiens

8 data files
FileTypeSize
ENCFF101JTN.fastq fastq (reads) 434.3 MB
ENCFF114ELO.bam bam (alignments) 180.8 MB
ENCFF164MAC.bigWig bigWig (plus strand signal of unique reads) 8.0 MB
ENCFF350QSA.bigWig bigWig (minus strand signal of unique reads) 7.6 MB
ENCFF481AIY.bam bam (alignments) 180.3 MB
ENCFF661RIY.fastq fastq (reads) 481.6 MB
ENCFF799UBV.bigWig bigWig (plus strand signal of unique reads) 7.9 MB
ENCFF880JXN.bigWig bigWig (minus strand signal of unique reads) 7.7 MB
ENCSR451HMR ENCSR · via encode_api

eCLIP control experiment on HepG2 against GTF2F1

Homo sapiens

8 data files
FileTypeSize
ENCFF017TUA.bigWig bigWig (plus strand signal of unique reads) 18.9 MB
ENCFF251NBU.fastq fastq (reads) 432.3 MB
ENCFF435UZZ.bam bam (alignments) 389.2 MB
ENCFF595TEO.fastq fastq (reads) 479.9 MB
ENCFF622JFU.bigWig bigWig (minus strand signal of unique reads) 18.5 MB
ENCFF764PHQ.bigWig bigWig (minus strand signal of unique reads) 18.2 MB
ENCFF946KUV.bigWig bigWig (plus strand signal of unique reads) 18.6 MB
ENCFF962TBZ.bam bam (alignments) 396.3 MB
ENCSR360QVI ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) input control experiment of RC3H1

1 data file
FileTypeSize
ENCFF016HYN.fastq fastq (reads) 684.2 MB
ENCSR066VOO ENCSR · via encode_api

shRNA knockdown against SRSF1 in K562 cells followed by RNA-seq. (SRSF1-LV11)

Homo sapiens

92 data files
FileTypeSize
ENCFF002VKE.bigWig bigWig (plus strand signal of all reads) 83.4 MB
ENCFF003HUQ.tsv tsv (differential expression quantifications) 5.4 MB
ENCFF043WWE.bam bam (transcriptome alignments) 3.8 GB
ENCFF059FSM.bigWig bigWig (minus strand signal of all reads) 97.5 MB
ENCFF065FXG.bam bam (transcriptome alignments) 4.4 GB
ENCFF068KMH.bigWig bigWig (plus strand signal of all reads) 83.9 MB
ENCFF071BVJ.bigWig bigWig (plus strand signal of unique reads) 77.6 MB
ENCFF084NTF.bigWig bigWig (plus strand signal of all reads) 99.2 MB
ENCFF089INR.bigWig bigWig (minus strand signal of all reads) 92.1 MB
ENCFF100ZHV.tsv tsv (transcript quantifications) 25.3 MB
ENCFF107BUR.bigWig bigWig (plus strand signal of all reads) 94.3 MB
ENCFF111RGQ.bigWig bigWig (plus strand signal of unique reads) 84.3 MB
ENCFF131ZAX.bigWig bigWig (minus strand signal of unique reads) 86.9 MB
ENCFF135OOD.bam bam (alignments) 2.5 GB
ENCFF180KQR.tsv tsv (transcript quantifications) 29.8 MB
ENCFF212DFZ.bigWig bigWig (minus strand signal of unique reads) 82.0 MB
ENCFF212TMJ.tsv tsv (differential expression quantifications) 4.4 MB
ENCFF228PBY.bigWig bigWig (minus strand signal of all reads) 92.5 MB
ENCFF229CHG.fastq fastq (reads) 2.1 GB
ENCFF242ZJX.bam bam (alignments) 2.9 GB
ENCFF263VMF.bigWig bigWig (plus strand signal of all reads) 81.7 MB
ENCFF266BFM.bigWig bigWig (plus strand signal of all reads) 101.0 MB
ENCFF280SKV.bigWig bigWig (minus strand signal of all reads) 99.4 MB
ENCFF305MOO.fastq fastq (reads) 2.0 GB
ENCFF322CJL.tsv tsv (gene quantifications) 10.4 MB
ENCFF322YUK.bigWig bigWig (minus strand signal of unique reads) 69.7 MB
ENCFF326IBQ.bigWig bigWig (plus strand signal of unique reads) 83.8 MB
ENCFF335GNB.bigWig bigWig (plus strand signal of all reads) 86.9 MB
ENCFF364DMQ.bam bam (transcriptome alignments) 5.3 GB
ENCFF380ZHZ.bigWig bigWig (minus strand signal of all reads) 80.4 MB
ENCFF404AUL.bigWig bigWig (minus strand signal of unique reads) 81.5 MB
ENCFF409SBC.bam bam (alignments) 3.4 GB
ENCFF411OWA.tsv tsv (gene quantifications) 9.1 MB
ENCFF412MVC.bigWig bigWig (plus strand signal of unique reads) 82.0 MB
ENCFF418NRM.bam bam (transcriptome alignments) 4.5 GB
ENCFF420OWN.bam bam (alignments) 2.6 GB
ENCFF445ZOU.bigWig bigWig (minus strand signal of all reads) 81.6 MB
ENCFF446HUH.bam bam (alignments) 2.5 GB
ENCFF446IVL.bam bam (alignments) 3.2 GB
ENCFF448EOP.bigWig bigWig (minus strand signal of all reads) 82.0 MB
ENCFF451ILH.bam bam (alignments) 3.7 GB
ENCFF468DSR.bigWig bigWig (minus strand signal of unique reads) 79.1 MB
ENCFF470EUS.bam bam (transcriptome alignments) 4.4 GB
ENCFF501BHG.bigWig bigWig (minus strand signal of all reads) 86.7 MB
ENCFF543RZB.bigWig bigWig (minus strand signal of all reads) 99.3 MB
ENCFF562CKM.tsv tsv (gene quantifications) 9.1 MB
ENCFF581EZL.tsv tsv (gene quantifications) 9.4 MB
ENCFF581JQU.bigWig bigWig (plus strand signal of unique reads) 77.7 MB
ENCFF590VOY.bam bam (alignments) 3.9 GB
ENCFF597IZH.bigWig bigWig (minus strand signal of unique reads) 75.2 MB
ENCFF625FQK.bigWig bigWig (plus strand signal of all reads) 101.0 MB
ENCFF627RDN.bam bam (alignments) 3.9 GB
ENCFF631BWC.bam bam (alignments) 2.9 GB
ENCFF649KSH.bam bam (transcriptome alignments) 3.8 GB
ENCFF651PEK.tsv tsv (transcript quantifications) 24.9 MB
ENCFF659UGE.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF662WOK.tsv tsv (transcript quantifications) 29.8 MB
ENCFF669MME.bam bam (alignments) 2.9 GB
ENCFF674OXT.tsv tsv (differential expression quantifications) 3.0 MB
ENCFF680EIY.bigWig bigWig (plus strand signal of unique reads) 89.5 MB
ENCFF692CFJ.tsv tsv (transcript quantifications) 24.9 MB
ENCFF707RAF.tar tar (differential splicing quantifications) 4.6 MB
ENCFF711WSO.tsv tsv (gene quantifications) 10.4 MB
ENCFF729XFI.bigWig bigWig (plus strand signal of unique reads) 89.5 MB
ENCFF735FDB.bigWig bigWig (plus strand signal of all reads) 77.7 MB
ENCFF738BZR.bigWig bigWig (minus strand signal of all reads) 85.4 MB
ENCFF744FVC.bigWig bigWig (plus strand signal of unique reads) 88.9 MB
ENCFF767UXH.bam bam (alignments) 3.4 GB
ENCFF774HVD.bigWig bigWig (plus strand signal of all reads) 94.1 MB
ENCFF790EMH.tsv tsv (transcript quantifications) 25.3 MB
ENCFF790ZUC.bigWig bigWig (minus strand signal of unique reads) 75.4 MB
ENCFF809NBC.bigWig bigWig (plus strand signal of all reads) 88.7 MB
ENCFF810OWN.bigWig bigWig (plus strand signal of unique reads) 77.0 MB
ENCFF835ZYM.tar tar (differential splicing quantifications) 15.5 MB
ENCFF849PIY.bigWig bigWig (plus strand signal of unique reads) 84.3 MB
ENCFF859AJV.bigWig bigWig (plus strand signal of unique reads) 72.0 MB
ENCFF862ESI.bigWig bigWig (minus strand signal of unique reads) 79.6 MB
ENCFF869BEK.tsv tsv (transcript quantifications) 27.4 MB
ENCFF875BKR.bigWig bigWig (minus strand signal of unique reads) 87.1 MB
ENCFF883JRJ.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF892UXR.tsv tsv (transcript quantifications) 27.4 MB
ENCFF896UMR.bigWig bigWig (minus strand signal of unique reads) 81.8 MB
ENCFF902NRJ.tar tar (differential splicing quantifications) 3.8 MB
ENCFF910QUS.bigWig bigWig (minus strand signal of all reads) 76.0 MB
ENCFF917BSR.bigWig bigWig (minus strand signal of unique reads) 75.0 MB
ENCFF920DSH.tsv tsv (gene quantifications) 9.5 MB
ENCFF925VFY.bigWig bigWig (plus strand signal of all reads) 93.7 MB
ENCFF940CVA.fastq fastq (reads) 1.7 GB
ENCFF959FZR.bigWig bigWig (plus strand signal of unique reads) 81.3 MB
ENCFF966REC.bigWig bigWig (minus strand signal of unique reads) 86.5 MB
ENCFF982SMM.bigWig bigWig (minus strand signal of all reads) 92.7 MB
ENCFF994CYS.fastq fastq (reads) 1.8 GB
ENCSR193FFA ENCSR · via encode_api

shRNA knockdown against ASCC1 in HepG2 cells followed by RNA-seq. (ASCC1-BGHLV12)

Homo sapiens

92 data files
FileTypeSize
ENCFF013YKZ.bigWig bigWig (plus strand signal of all reads) 69.0 MB
ENCFF019UDJ.bigWig bigWig (plus strand signal of unique reads) 66.5 MB
ENCFF020JJN.bigWig bigWig (minus strand signal of all reads) 73.9 MB
ENCFF032SRF.bigWig bigWig (minus strand signal of unique reads) 64.5 MB
ENCFF034CXB.bigWig bigWig (plus strand signal of all reads) 70.1 MB
ENCFF037MOS.bam bam (alignments) 5.2 GB
ENCFF064AZY.bigWig bigWig (minus strand signal of all reads) 73.8 MB
ENCFF066YVB.bam bam (alignments) 4.4 GB
ENCFF073QWS.bam bam (alignments) 5.8 GB
ENCFF074RKR.bam bam (alignments) 4.4 GB
ENCFF088DCW.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF092DCF.tsv tsv (transcript quantifications) 24.9 MB
ENCFF104CMK.bigWig bigWig (minus strand signal of all reads) 65.6 MB
ENCFF125RJE.tsv tsv (differential expression quantifications) 3.0 MB
ENCFF133XPC.tsv tsv (transcript quantifications) 25.3 MB
ENCFF142BQO.tar tar (differential splicing quantifications) 3.7 MB
ENCFF169WCL.bam bam (alignments) 5.8 GB
ENCFF170LAV.bam bam (alignments) 5.5 GB
ENCFF197KIT.bigWig bigWig (minus strand signal of unique reads) 64.5 MB
ENCFF204VQH.bigWig bigWig (minus strand signal of all reads) 67.6 MB
ENCFF240FYQ.bigWig bigWig (plus strand signal of unique reads) 65.8 MB
ENCFF260KUB.tsv tsv (transcript quantifications) 29.8 MB
ENCFF275NBI.tar tar (differential splicing quantifications) 3.1 MB
ENCFF280IMC.bigWig bigWig (plus strand signal of all reads) 75.4 MB
ENCFF282FYS.bigWig bigWig (minus strand signal of unique reads) 67.6 MB
ENCFF299KPW.fastq fastq (reads) 3.0 GB
ENCFF313HKC.bigWig bigWig (plus strand signal of all reads) 75.5 MB
ENCFF363WAW.fastq fastq (reads) 2.9 GB
ENCFF383QKW.bigWig bigWig (minus strand signal of unique reads) 67.7 MB
ENCFF400GYQ.tsv tsv (transcript quantifications) 24.9 MB
ENCFF419PLX.bigWig bigWig (plus strand signal of all reads) 67.1 MB
ENCFF419RXQ.bigWig bigWig (minus strand signal of unique reads) 64.7 MB
ENCFF429PAO.bigWig bigWig (minus strand signal of unique reads) 64.4 MB
ENCFF430XDN.bigWig bigWig (minus strand signal of unique reads) 67.4 MB
ENCFF441WSN.tar tar (differential splicing quantifications) 16.5 MB
ENCFF447PPB.bigWig bigWig (plus strand signal of unique reads) 69.3 MB
ENCFF451ZQN.bam bam (alignments) 4.6 GB
ENCFF465GBT.tsv tsv (transcript quantifications) 25.3 MB
ENCFF474YAR.bigWig bigWig (plus strand signal of all reads) 75.1 MB
ENCFF478LLS.tsv tsv (differential expression quantifications) 4.3 MB
ENCFF481KXO.bigWig bigWig (plus strand signal of all reads) 72.1 MB
ENCFF482TPJ.bam bam (alignments) 5.5 GB
ENCFF483MXR.bigWig bigWig (minus strand signal of unique reads) 60.4 MB
ENCFF487KSX.bigWig bigWig (plus strand signal of all reads) 65.3 MB
ENCFF491BHU.tsv tsv (gene quantifications) 9.1 MB
ENCFF491BPO.bam bam (alignments) 4.5 GB
ENCFF502KGY.tsv tsv (transcript quantifications) 27.3 MB
ENCFF507JPV.bigWig bigWig (plus strand signal of all reads) 66.2 MB
ENCFF516BQV.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF529SJL.bigWig bigWig (minus strand signal of unique reads) 63.1 MB
ENCFF542BRX.bam bam (transcriptome alignments) 7.1 GB
ENCFF548VBS.bigWig bigWig (plus strand signal of unique reads) 65.0 MB
ENCFF562JGZ.bigWig bigWig (plus strand signal of all reads) 68.5 MB
ENCFF571MVA.bigWig bigWig (minus strand signal of all reads) 70.7 MB
ENCFF573PLO.bigWig bigWig (minus strand signal of unique reads) 61.2 MB
ENCFF577EQN.bigWig bigWig (plus strand signal of unique reads) 66.2 MB
ENCFF616EWC.bigWig bigWig (minus strand signal of all reads) 64.7 MB
ENCFF618ZBB.bigWig bigWig (plus strand signal of unique reads) 66.3 MB
ENCFF651CXC.bigWig bigWig (minus strand signal of unique reads) 64.3 MB
ENCFF652YRL.bigWig bigWig (minus strand signal of all reads) 73.9 MB
ENCFF664YEU.bigWig bigWig (minus strand signal of unique reads) 61.7 MB
ENCFF691LHA.bigWig bigWig (plus strand signal of unique reads) 63.4 MB
ENCFF715WFP.bigWig bigWig (plus strand signal of unique reads) 62.7 MB
ENCFF718XBZ.bigWig bigWig (minus strand signal of all reads) 71.1 MB
ENCFF721NQA.tsv tsv (gene quantifications) 10.4 MB
ENCFF725XNK.tsv tsv (differential expression quantifications) 1.8 MB
ENCFF749DKA.fastq fastq (reads) 3.0 GB
ENCFF757BUU.bigWig bigWig (plus strand signal of unique reads) 69.2 MB
ENCFF765XDQ.tsv tsv (gene quantifications) 9.1 MB
ENCFF782RCJ.bigWig bigWig (minus strand signal of all reads) 71.1 MB
ENCFF790DYC.bigWig bigWig (plus strand signal of all reads) 72.7 MB
ENCFF808UAT.bam bam (transcriptome alignments) 8.3 GB
ENCFF820GXH.tsv tsv (transcript quantifications) 27.3 MB
ENCFF824FQY.tsv tsv (gene quantifications) 9.4 MB
ENCFF833ZMD.bigWig bigWig (minus strand signal of all reads) 66.9 MB
ENCFF841EGL.bigWig bigWig (minus strand signal of all reads) 63.8 MB
ENCFF842UTG.tsv tsv (gene quantifications) 10.4 MB
ENCFF850UMR.bigWig bigWig (plus strand signal of all reads) 72.7 MB
ENCFF858ZUP.tsv tsv (gene quantifications) 9.4 MB
ENCFF867UZC.bam bam (alignments) 4.7 GB
ENCFF876WYE.bam bam (transcriptome alignments) 7.3 GB
ENCFF904BLH.fastq fastq (reads) 2.9 GB
ENCFF910UKV.bigWig bigWig (plus strand signal of unique reads) 62.2 MB
ENCFF914MQN.bam bam (alignments) 4.4 GB
ENCFF948YWB.bam bam (alignments) 5.3 GB
ENCFF955MYS.bam bam (transcriptome alignments) 7.2 GB
ENCFF965MDY.bigWig bigWig (plus strand signal of unique reads) 66.2 MB
ENCFF968IMX.bigWig bigWig (plus strand signal of unique reads) 69.4 MB
ENCFF982DLX.bigWig bigWig (minus strand signal of all reads) 68.6 MB
ENCFF997NWV.bam bam (transcriptome alignments) 7.4 GB
ENCFF997XPB.bam bam (transcriptome alignments) 8.1 GB
ENCFF999XCT.tsv tsv (transcript quantifications) 29.8 MB
ENCSR610AEI ENCSR · via encode_api

shRNA knockdown against RBM25 in HepG2 cells followed by RNA-seq. (RBM25-BGHLV12)

Homo sapiens

92 data files
FileTypeSize
ENCFF005EIK.bam bam (transcriptome alignments) 7.3 GB
ENCFF048XTY.bigWig bigWig (plus strand signal of all reads) 100.6 MB
ENCFF052IYR.fastq fastq (reads) 3.2 GB
ENCFF085YOZ.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF117AVL.bigWig bigWig (plus strand signal of all reads) 100.7 MB
ENCFF145ACW.tsv tsv (transcript quantifications) 25.3 MB
ENCFF151VAF.tsv tsv (transcript quantifications) 24.9 MB
ENCFF194BWM.bigWig bigWig (minus strand signal of unique reads) 76.9 MB
ENCFF199HFL.bigWig bigWig (minus strand signal of all reads) 99.0 MB
ENCFF199QND.tar tar (differential splicing quantifications) 4.0 MB
ENCFF207WJM.bigWig bigWig (minus strand signal of unique reads) 80.2 MB
ENCFF221TBP.bigWig bigWig (plus strand signal of all reads) 83.2 MB
ENCFF255BZJ.bam bam (alignments) 4.9 GB
ENCFF257NZG.tsv tsv (differential expression quantifications) 4.4 MB
ENCFF261BAQ.tsv tsv (gene quantifications) 10.4 MB
ENCFF281PUH.bigWig bigWig (minus strand signal of unique reads) 81.1 MB
ENCFF284QFZ.tsv tsv (transcript quantifications) 29.8 MB
ENCFF297FPM.bigWig bigWig (minus strand signal of unique reads) 80.7 MB
ENCFF297VYC.bigWig bigWig (minus strand signal of all reads) 78.1 MB
ENCFF300EVH.tsv tsv (transcript quantifications) 24.9 MB
ENCFF322NIO.bam bam (alignments) 5.6 GB
ENCFF327FQO.bam bam (alignments) 5.8 GB
ENCFF335MQE.fastq fastq (reads) 3.2 GB
ENCFF342XIO.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF343LSB.bigWig bigWig (minus strand signal of all reads) 85.4 MB
ENCFF349KHC.bam bam (alignments) 4.9 GB
ENCFF352UIV.bigWig bigWig (plus strand signal of unique reads) 91.3 MB
ENCFF370FQA.tsv tsv (gene quantifications) 9.4 MB
ENCFF378EMP.tsv tsv (differential expression quantifications) 1.8 MB
ENCFF392XDT.bigWig bigWig (plus strand signal of all reads) 82.2 MB
ENCFF418YVG.fastq fastq (reads) 3.2 GB
ENCFF445GRC.bam bam (transcriptome alignments) 7.4 GB
ENCFF448NET.tsv tsv (gene quantifications) 9.1 MB
ENCFF459ZQV.bigWig bigWig (plus strand signal of unique reads) 90.9 MB
ENCFF463XRU.bigWig bigWig (minus strand signal of all reads) 89.6 MB
ENCFF476WLL.bigWig bigWig (plus strand signal of unique reads) 87.3 MB
ENCFF486SOE.bigWig bigWig (minus strand signal of unique reads) 88.6 MB
ENCFF510LBO.bigWig bigWig (minus strand signal of all reads) 99.0 MB
ENCFF512XPC.bam bam (alignments) 5.8 GB
ENCFF518EYV.bam bam (alignments) 5.8 GB
ENCFF537KQM.tsv tsv (transcript quantifications) 25.3 MB
ENCFF552KIZ.bam bam (transcriptome alignments) 8.2 GB
ENCFF566FBK.tsv tsv (gene quantifications) 9.4 MB
ENCFF575DGX.bam bam (alignments) 6.0 GB
ENCFF575OOM.bigWig bigWig (plus strand signal of all reads) 91.0 MB
ENCFF576MJW.bigWig bigWig (minus strand signal of all reads) 89.5 MB
ENCFF586RZX.bigWig bigWig (minus strand signal of all reads) 89.5 MB
ENCFF588DNE.bigWig bigWig (plus strand signal of all reads) 87.1 MB
ENCFF589AXD.bigWig bigWig (plus strand signal of unique reads) 83.2 MB
ENCFF589MFR.bigWig bigWig (minus strand signal of unique reads) 80.2 MB
ENCFF596TQE.bigWig bigWig (plus strand signal of all reads) 90.9 MB
ENCFF597QCI.bigWig bigWig (minus strand signal of unique reads) 88.9 MB
ENCFF624HAJ.bigWig bigWig (minus strand signal of unique reads) 83.4 MB
ENCFF628CPD.bigWig bigWig (plus strand signal of all reads) 91.1 MB
ENCFF629BPS.bigWig bigWig (minus strand signal of all reads) 88.3 MB
ENCFF637CUC.bigWig bigWig (minus strand signal of unique reads) 88.5 MB
ENCFF645ISS.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF668WFN.tsv tsv (transcript quantifications) 27.4 MB
ENCFF679XQT.tsv tsv (transcript quantifications) 29.8 MB
ENCFF682KDM.fastq fastq (reads) 3.3 GB
ENCFF682OQT.bigWig bigWig (minus strand signal of all reads) 80.8 MB
ENCFF682XSK.bigWig bigWig (plus strand signal of unique reads) 82.3 MB
ENCFF698PRV.tsv tsv (gene quantifications) 9.1 MB
ENCFF701FXK.bigWig bigWig (plus strand signal of all reads) 79.6 MB
ENCFF712SQJ.bigWig bigWig (plus strand signal of unique reads) 78.3 MB
ENCFF750LPJ.tsv tsv (gene quantifications) 10.4 MB
ENCFF756ZGV.bam bam (alignments) 4.9 GB
ENCFF762YCM.tsv tsv (transcript quantifications) 27.3 MB
ENCFF773GFC.bigWig bigWig (minus strand signal of all reads) 97.3 MB
ENCFF782OAU.bam bam (alignments) 6.0 GB
ENCFF787NXJ.bigWig bigWig (plus strand signal of unique reads) 79.0 MB
ENCFF791PYM.bigWig bigWig (plus strand signal of unique reads) 90.8 MB
ENCFF826ZVP.bam bam (alignments) 4.8 GB
ENCFF827NIC.bigWig bigWig (plus strand signal of all reads) 89.6 MB
ENCFF828BZP.bam bam (transcriptome alignments) 7.3 GB
ENCFF839JWN.bigWig bigWig (minus strand signal of unique reads) 73.5 MB
ENCFF847LPD.bigWig bigWig (plus strand signal of unique reads) 85.5 MB
ENCFF859HQK.bigWig bigWig (plus strand signal of unique reads) 82.4 MB
ENCFF862DIV.bigWig bigWig (plus strand signal of all reads) 91.7 MB
ENCFF873GQZ.bam bam (transcriptome alignments) 7.3 GB
ENCFF878KFU.bigWig bigWig (minus strand signal of unique reads) 85.0 MB
ENCFF879FGH.bigWig bigWig (plus strand signal of all reads) 98.9 MB
ENCFF888NZR.bigWig bigWig (plus strand signal of unique reads) 75.6 MB
ENCFF955OSM.bam bam (alignments) 5.0 GB
ENCFF956YYL.bigWig bigWig (minus strand signal of all reads) 90.0 MB
ENCFF962XCB.bam bam (alignments) 4.8 GB
ENCFF967CZA.bigWig bigWig (minus strand signal of all reads) 81.6 MB
ENCFF973QSZ.bigWig bigWig (minus strand signal of unique reads) 76.5 MB
ENCFF980LIF.bam bam (transcriptome alignments) 8.2 GB
ENCFF983JFQ.bigWig bigWig (plus strand signal of unique reads) 82.8 MB
ENCFF994NVT.tar tar (differential splicing quantifications) 16.5 MB
ENCFF997ZAS.tar tar (differential splicing quantifications) 3.3 MB
ENCSR148MQK ENCSR · via encode_api

shRNA knockdown against SF3B4 in HepG2 cells followed by RNA-seq. (SF3B4-BGHLV12)

Homo sapiens

92 data files
FileTypeSize
ENCFF007EGX.bigWig bigWig (plus strand signal of all reads) 111.4 MB
ENCFF011WTO.tar tar (differential splicing quantifications) 16.8 MB
ENCFF040XAM.bigWig bigWig (minus strand signal of unique reads) 93.8 MB
ENCFF054SDQ.bigWig bigWig (plus strand signal of unique reads) 85.9 MB
ENCFF058RKL.bigWig bigWig (plus strand signal of unique reads) 92.9 MB
ENCFF059JZJ.bigWig bigWig (minus strand signal of all reads) 105.7 MB
ENCFF061UBO.bam bam (alignments) 5.6 GB
ENCFF086WUO.bigWig bigWig (plus strand signal of unique reads) 95.4 MB
ENCFF102YXB.tsv tsv (transcript quantifications) 25.3 MB
ENCFF106WNO.bigWig bigWig (minus strand signal of unique reads) 89.4 MB
ENCFF108UQQ.bigWig bigWig (minus strand signal of unique reads) 94.2 MB
ENCFF117VWJ.bigWig bigWig (minus strand signal of all reads) 97.3 MB
ENCFF130APF.tsv tsv (gene quantifications) 9.4 MB
ENCFF139NPS.tsv tsv (transcript quantifications) 24.9 MB
ENCFF140BSJ.tsv tsv (transcript quantifications) 27.4 MB
ENCFF140COF.bigWig bigWig (plus strand signal of unique reads) 90.8 MB
ENCFF147FNO.bam bam (transcriptome alignments) 7.4 GB
ENCFF150CEB.bigWig bigWig (plus strand signal of all reads) 92.4 MB
ENCFF166WVM.tsv tsv (transcript quantifications) 25.3 MB
ENCFF172CDF.bigWig bigWig (plus strand signal of all reads) 111.4 MB
ENCFF173BPX.bigWig bigWig (plus strand signal of all reads) 96.5 MB
ENCFF174FDS.bigWig bigWig (minus strand signal of all reads) 90.7 MB
ENCFF198LWL.bigWig bigWig (minus strand signal of all reads) 105.7 MB
ENCFF207NHT.bigWig bigWig (minus strand signal of all reads) 109.5 MB
ENCFF214YOC.bigWig bigWig (minus strand signal of all reads) 95.2 MB
ENCFF215WYQ.bigWig bigWig (minus strand signal of unique reads) 95.3 MB
ENCFF229HQI.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF231FEJ.bigWig bigWig (minus strand signal of all reads) 108.7 MB
ENCFF248NCN.bigWig bigWig (minus strand signal of unique reads) 97.6 MB
ENCFF254TNR.tsv tsv (transcript quantifications) 29.8 MB
ENCFF258BBU.bam bam (transcriptome alignments) 6.6 GB
ENCFF259ZYJ.bam bam (alignments) 6.1 GB
ENCFF267UNA.tsv tsv (gene quantifications) 9.4 MB
ENCFF280EXX.bigWig bigWig (plus strand signal of all reads) 100.9 MB
ENCFF283MXG.bam bam (alignments) 4.6 GB
ENCFF301YOD.bam bam (alignments) 5.9 GB
ENCFF352XRP.tsv tsv (gene quantifications) 10.4 MB
ENCFF361IWO.bam bam (transcriptome alignments) 7.3 GB
ENCFF365YCY.bam bam (transcriptome alignments) 7.5 GB
ENCFF380BUJ.bigWig bigWig (plus strand signal of all reads) 99.1 MB
ENCFF414FOX.bigWig bigWig (minus strand signal of all reads) 109.5 MB
ENCFF474KUN.bigWig bigWig (plus strand signal of all reads) 102.7 MB
ENCFF494LZQ.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF501MPG.bigWig bigWig (plus strand signal of all reads) 107.5 MB
ENCFF503EWD.tsv tsv (gene quantifications) 9.1 MB
ENCFF512YII.bigWig bigWig (minus strand signal of unique reads) 98.7 MB
ENCFF527BWA.bigWig bigWig (plus strand signal of unique reads) 96.4 MB
ENCFF541HLQ.fastq fastq (reads) 3.3 GB
ENCFF544DWA.tar tar (differential splicing quantifications) 3.9 MB
ENCFF565GUL.bam bam (alignments) 5.1 GB
ENCFF565MFK.bigWig bigWig (plus strand signal of all reads) 106.5 MB
ENCFF573ENR.bigWig bigWig (plus strand signal of unique reads) 96.6 MB
ENCFF574VJE.bigWig bigWig (minus strand signal of unique reads) 93.0 MB
ENCFF576JHE.bam bam (alignments) 4.7 GB
ENCFF577SZL.bigWig bigWig (minus strand signal of unique reads) 94.6 MB
ENCFF614SQH.bam bam (transcriptome alignments) 8.3 GB
ENCFF623FKL.bigWig bigWig (minus strand signal of all reads) 94.8 MB
ENCFF653QHN.bigWig bigWig (plus strand signal of unique reads) 101.3 MB
ENCFF702RGX.bam bam (alignments) 5.6 GB
ENCFF716GTL.bigWig bigWig (minus strand signal of all reads) 104.9 MB
ENCFF718IHB.bam bam (alignments) 4.6 GB
ENCFF722IBM.tsv tsv (transcript quantifications) 27.4 MB
ENCFF734TEO.tsv tsv (transcript quantifications) 24.9 MB
ENCFF746STC.tsv tsv (gene quantifications) 9.1 MB
ENCFF777GTR.tsv tsv (gene quantifications) 10.4 MB
ENCFF784ZDW.bam bam (alignments) 5.4 GB
ENCFF794GYO.bigWig bigWig (plus strand signal of unique reads) 91.6 MB
ENCFF795INI.bigWig bigWig (plus strand signal of all reads) 110.4 MB
ENCFF808BSJ.bam bam (transcriptome alignments) 6.6 GB
ENCFF822KIN.tsv tsv (differential expression quantifications) 4.4 MB
ENCFF823ZLQ.fastq fastq (reads) 3.0 GB
ENCFF825DLG.fastq fastq (reads) 3.0 GB
ENCFF825NVY.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF831FPN.bigWig bigWig (minus strand signal of unique reads) 83.7 MB
ENCFF836ROE.bigWig bigWig (minus strand signal of unique reads) 98.7 MB
ENCFF852TYT.bigWig bigWig (minus strand signal of all reads) 99.1 MB
ENCFF855NHU.fastq fastq (reads) 3.3 GB
ENCFF856NBK.tsv tsv (transcript quantifications) 29.8 MB
ENCFF856WJU.bigWig bigWig (plus strand signal of unique reads) 97.8 MB
ENCFF876DTT.bigWig bigWig (minus strand signal of all reads) 100.7 MB
ENCFF899UEP.bigWig bigWig (plus strand signal of all reads) 107.5 MB
ENCFF907RIN.bigWig bigWig (plus strand signal of all reads) 97.3 MB
ENCFF909ARI.bigWig bigWig (minus strand signal of unique reads) 90.5 MB
ENCFF915UKT.bigWig bigWig (plus strand signal of unique reads) 101.3 MB
ENCFF927LGM.bam bam (alignments) 6.1 GB
ENCFF951EFL.bigWig bigWig (plus strand signal of unique reads) 100.3 MB
ENCFF954COO.tsv tsv (differential expression quantifications) 3.0 MB
ENCFF957VDQ.bigWig bigWig (plus strand signal of unique reads) 97.0 MB
ENCFF965CYH.bam bam (alignments) 5.0 GB
ENCFF973TMX.tar tar (differential splicing quantifications) 4.8 MB
ENCFF987GMJ.bam bam (alignments) 5.0 GB
ENCFF992VKR.bigWig bigWig (minus strand signal of unique reads) 88.2 MB
ENCSR710NWE ENCSR · via encode_api

shRNA knockdown against IGF2BP3 in HepG2 cells followed by RNA-seq. (IGF2BP3-BGHLV12)

Homo sapiens

92 data files
FileTypeSize
ENCFF019HKK.bam bam (alignments) 4.7 GB
ENCFF031PXS.bigWig bigWig (plus strand signal of all reads) 95.1 MB
ENCFF043ZDQ.bigWig bigWig (plus strand signal of all reads) 89.9 MB
ENCFF047XRV.bigWig bigWig (minus strand signal of all reads) 100.5 MB
ENCFF054AUT.bam bam (transcriptome alignments) 7.5 GB
ENCFF057UTZ.tsv tsv (differential expression quantifications) 1.8 MB
ENCFF059UEP.bam bam (transcriptome alignments) 4.1 GB
ENCFF065AKY.bigWig bigWig (plus strand signal of all reads) 102.1 MB
ENCFF075KLM.bigWig bigWig (plus strand signal of all reads) 101.3 MB
ENCFF085IOS.bigWig bigWig (plus strand signal of unique reads) 59.5 MB
ENCFF089GSG.tsv tsv (transcript quantifications) 25.3 MB
ENCFF116DHN.tsv tsv (differential expression quantifications) 4.3 MB
ENCFF123NTP.bigWig bigWig (minus strand signal of all reads) 100.5 MB
ENCFF126GWL.bigWig bigWig (plus strand signal of unique reads) 91.7 MB
ENCFF130KNV.bam bam (alignments) 5.8 GB
ENCFF135QDS.bigWig bigWig (minus strand signal of all reads) 65.0 MB
ENCFF138REI.bigWig bigWig (minus strand signal of unique reads) 55.0 MB
ENCFF139QUM.bigWig bigWig (plus strand signal of unique reads) 56.6 MB
ENCFF155JRB.tsv tsv (transcript quantifications) 25.3 MB
ENCFF193FOL.tsv tsv (gene quantifications) 9.5 MB
ENCFF214YEW.bigWig bigWig (minus strand signal of unique reads) 89.8 MB
ENCFF217IRN.bigWig bigWig (plus strand signal of all reads) 60.7 MB
ENCFF222QZR.tsv tsv (transcript quantifications) 24.9 MB
ENCFF237MJX.bigWig bigWig (plus strand signal of unique reads) 56.2 MB
ENCFF242SHM.bigWig bigWig (minus strand signal of all reads) 58.2 MB
ENCFF253TBQ.bigWig bigWig (plus strand signal of unique reads) 92.1 MB
ENCFF266CLD.tsv tsv (transcript quantifications) 27.2 MB
ENCFF290IPH.bigWig bigWig (minus strand signal of unique reads) 51.8 MB
ENCFF301WUW.bigWig bigWig (minus strand signal of all reads) 55.7 MB
ENCFF309UZB.bigWig bigWig (minus strand signal of all reads) 65.0 MB
ENCFF312ROS.fastq fastq (reads) 3.1 GB
ENCFF342UZR.tsv tsv (transcript quantifications) 24.9 MB
ENCFF356ZLF.bigWig bigWig (minus strand signal of unique reads) 58.2 MB
ENCFF359FIM.bam bam (transcriptome alignments) 4.7 GB
ENCFF368NIJ.bigWig bigWig (minus strand signal of unique reads) 86.6 MB
ENCFF387STM.bigWig bigWig (minus strand signal of unique reads) 58.2 MB
ENCFF410WVR.tsv tsv (gene quantifications) 9.4 MB
ENCFF428OGQ.bam bam (alignments) 3.4 GB
ENCFF429OLI.tar tar (differential splicing quantifications) 3.7 MB
ENCFF437SYZ.tsv tsv (gene quantifications) 10.4 MB
ENCFF441NPW.bam bam (alignments) 3.3 GB
ENCFF448TEQ.bigWig bigWig (plus strand signal of all reads) 93.3 MB
ENCFF486WNO.bigWig bigWig (minus strand signal of unique reads) 89.4 MB
ENCFF487OXY.bam bam (alignments) 2.8 GB
ENCFF494BHB.bigWig bigWig (minus strand signal of unique reads) 58.2 MB
ENCFF525DHB.tsv tsv (transcript quantifications) 29.7 MB
ENCFF536RKP.bam bam (alignments) 4.8 GB
ENCFF541INU.bigWig bigWig (minus strand signal of all reads) 88.5 MB
ENCFF590VVH.bigWig bigWig (minus strand signal of unique reads) 82.3 MB
ENCFF591GQA.bigWig bigWig (minus strand signal of all reads) 99.9 MB
ENCFF594THR.bigWig bigWig (plus strand signal of all reads) 65.1 MB
ENCFF595SGX.tsv tsv (transcript quantifications) 29.8 MB
ENCFF597UXM.tsv tsv (transcript quantifications) 27.4 MB
ENCFF603MCQ.tsv tsv (differential expression quantifications) 5.7 MB
ENCFF624KNC.bigWig bigWig (plus strand signal of unique reads) 59.5 MB
ENCFF635XDN.bigWig bigWig (minus strand signal of all reads) 59.7 MB
ENCFF669IAJ.bigWig bigWig (plus strand signal of all reads) 64.3 MB
ENCFF675OOA.bigWig bigWig (plus strand signal of all reads) 59.1 MB
ENCFF683AXB.fastq fastq (reads) 3.2 GB
ENCFF687MCJ.bam bam (transcriptome alignments) 8.5 GB
ENCFF724HGH.bigWig bigWig (plus strand signal of all reads) 56.5 MB
ENCFF726MZJ.bam bam (alignments) 4.8 GB
ENCFF740YUA.bigWig bigWig (plus strand signal of unique reads) 88.4 MB
ENCFF753NXB.bam bam (alignments) 5.6 GB
ENCFF755DOK.bigWig bigWig (plus strand signal of all reads) 102.1 MB
ENCFF762MFD.bigWig bigWig (minus strand signal of all reads) 64.5 MB
ENCFF782VXE.bigWig bigWig (plus strand signal of unique reads) 93.1 MB
ENCFF784FKR.tsv tsv (gene quantifications) 9.1 MB
ENCFF786WNP.bigWig bigWig (plus strand signal of unique reads) 59.6 MB
ENCFF789WXZ.bigWig bigWig (plus strand signal of unique reads) 89.0 MB
ENCFF819ENX.bam bam (alignments) 2.8 GB
ENCFF826MNW.bigWig bigWig (minus strand signal of unique reads) 86.3 MB
ENCFF840OLW.bigWig bigWig (plus strand signal of unique reads) 52.9 MB
ENCFF848EUT.bam bam (alignments) 5.8 GB
ENCFF854XRB.tsv tsv (gene quantifications) 10.4 MB
ENCFF857LCX.bam bam (alignments) 3.4 GB
ENCFF866OFB.bigWig bigWig (plus strand signal of all reads) 65.1 MB
ENCFF873TWM.fastq fastq (reads) 1.9 GB
ENCFF900HXO.bigWig bigWig (minus strand signal of unique reads) 90.7 MB
ENCFF903GYZ.fastq fastq (reads) 1.9 GB
ENCFF927DJC.bam bam (transcriptome alignments) 4.2 GB
ENCFF930KJO.bam bam (alignments) 2.8 GB
ENCFF948WPZ.tsv tsv (differential expression quantifications) 2.8 MB
ENCFF952DGB.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF956IQE.tar tar (differential splicing quantifications) 3.0 MB
ENCFF960WGZ.bam bam (transcriptome alignments) 7.4 GB
ENCFF962CLT.tsv tsv (gene quantifications) 9.1 MB
ENCFF967ACR.bigWig bigWig (minus strand signal of unique reads) 55.3 MB
ENCFF972XTI.bigWig bigWig (minus strand signal of all reads) 91.8 MB
ENCFF989UCQ.bigWig bigWig (minus strand signal of all reads) 93.3 MB
ENCFF993QTS.tar tar (differential splicing quantifications) 15.6 MB
ENCFF995CKO.bigWig bigWig (plus strand signal of unique reads) 84.4 MB
ENCSR253DCB ENCSR · via encode_api

shRNA knockdown against ASCC1 in K562 cells followed by RNA-seq. (ASCC1-LV08)

Homo sapiens

92 data files
FileTypeSize
ENCFF004YPW.tsv tsv (gene quantifications) 9.1 MB
ENCFF009AKR.bigWig bigWig (minus strand signal of unique reads) 79.7 MB
ENCFF009HBH.bigWig bigWig (minus strand signal of unique reads) 73.3 MB
ENCFF026PRO.bam bam (transcriptome alignments) 4.3 GB
ENCFF034KWH.bigWig bigWig (minus strand signal of unique reads) 68.9 MB
ENCFF036ZLS.tsv tsv (transcript quantifications) 27.4 MB
ENCFF040BBQ.bigWig bigWig (minus strand signal of unique reads) 73.7 MB
ENCFF051SXX.fastq fastq (reads) 2.2 GB
ENCFF078EGY.tsv tsv (gene quantifications) 9.5 MB
ENCFF087ERH.bigWig bigWig (plus strand signal of all reads) 80.9 MB
ENCFF089SYP.bigWig bigWig (plus strand signal of unique reads) 71.2 MB
ENCFF118FVD.bigWig bigWig (minus strand signal of unique reads) 72.6 MB
ENCFF119CVR.bigWig bigWig (minus strand signal of all reads) 90.1 MB
ENCFF149WWN.bam bam (alignments) 3.6 GB
ENCFF203DAJ.bigWig bigWig (minus strand signal of all reads) 91.4 MB
ENCFF204MKS.tsv tsv (transcript quantifications) 29.8 MB
ENCFF207UOR.tsv tsv (gene quantifications) 9.1 MB
ENCFF213UIW.bigWig bigWig (plus strand signal of all reads) 92.8 MB
ENCFF226FTW.bigWig bigWig (plus strand signal of unique reads) 75.2 MB
ENCFF229UYP.bigWig bigWig (minus strand signal of unique reads) 78.8 MB
ENCFF238JZC.bigWig bigWig (minus strand signal of all reads) 78.2 MB
ENCFF241HLR.fastq fastq (reads) 2.2 GB
ENCFF246GAK.bam bam (alignments) 3.7 GB
ENCFF251PDB.bam bam (alignments) 3.5 GB
ENCFF252XWE.tsv tsv (gene quantifications) 9.5 MB
ENCFF256ZMQ.bigWig bigWig (minus strand signal of all reads) 79.3 MB
ENCFF264RJE.bigWig bigWig (plus strand signal of all reads) 91.5 MB
ENCFF280ZBR.tsv tsv (differential expression quantifications) 5.4 MB
ENCFF292ROU.fastq fastq (reads) 2.2 GB
ENCFF298IJL.bigWig bigWig (plus strand signal of all reads) 79.4 MB
ENCFF314OVA.tsv tsv (gene quantifications) 10.4 MB
ENCFF353FPL.tar tar (differential splicing quantifications) 3.7 MB
ENCFF369GVJ.bam bam (alignments) 3.5 GB
ENCFF371VHB.tsv tsv (transcript quantifications) 24.9 MB
ENCFF385OPY.tsv tsv (transcript quantifications) 25.3 MB
ENCFF393KDJ.bigWig bigWig (minus strand signal of all reads) 90.5 MB
ENCFF398LFB.bam bam (alignments) 4.4 GB
ENCFF435ZPX.bigWig bigWig (plus strand signal of unique reads) 81.2 MB
ENCFF440UQF.bam bam (transcriptome alignments) 4.5 GB
ENCFF451LJI.bigWig bigWig (minus strand signal of all reads) 75.0 MB
ENCFF470AUT.bigWig bigWig (minus strand signal of all reads) 91.4 MB
ENCFF474WYE.tar tar (differential splicing quantifications) 3.3 MB
ENCFF474XXN.bigWig bigWig (plus strand signal of all reads) 91.9 MB
ENCFF510UPQ.bigWig bigWig (minus strand signal of unique reads) 78.3 MB
ENCFF520ZAS.bigWig bigWig (plus strand signal of unique reads) 74.5 MB
ENCFF522HBU.bigWig bigWig (minus strand signal of unique reads) 79.0 MB
ENCFF553IAJ.bigWig bigWig (minus strand signal of unique reads) 73.0 MB
ENCFF553NAO.bam bam (alignments) 4.4 GB
ENCFF564CFF.bigWig bigWig (plus strand signal of unique reads) 71.0 MB
ENCFF572AXP.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF606FNR.bigWig bigWig (plus strand signal of all reads) 90.5 MB
ENCFF612EHE.bigWig bigWig (plus strand signal of unique reads) 80.6 MB
ENCFF614SVV.bigWig bigWig (plus strand signal of all reads) 92.8 MB
ENCFF624WCC.bam bam (alignments) 4.1 GB
ENCFF627QUR.bam bam (alignments) 3.6 GB
ENCFF635TNA.bigWig bigWig (minus strand signal of unique reads) 79.9 MB
ENCFF640YHY.bigWig bigWig (plus strand signal of unique reads) 75.9 MB
ENCFF649WUT.bam bam (alignments) 4.2 GB
ENCFF650KVF.tsv tsv (differential expression quantifications) 4.1 MB
ENCFF650OBH.tsv tsv (transcript quantifications) 25.3 MB
ENCFF666BNC.bigWig bigWig (minus strand signal of all reads) 79.7 MB
ENCFF676JGE.bam bam (alignments) 4.4 GB
ENCFF686TLZ.bam bam (transcriptome alignments) 4.5 GB
ENCFF690VZF.bam bam (transcriptome alignments) 4.3 GB
ENCFF690XLO.tsv tsv (differential expression quantifications) 2.8 MB
ENCFF697TSD.bigWig bigWig (minus strand signal of all reads) 89.1 MB
ENCFF732ZDS.tsv tsv (transcript quantifications) 29.8 MB
ENCFF750WBF.fastq fastq (reads) 2.2 GB
ENCFF771WBE.bigWig bigWig (plus strand signal of unique reads) 81.7 MB
ENCFF790MEO.bigWig bigWig (plus strand signal of unique reads) 75.2 MB
ENCFF800ITK.bigWig bigWig (plus strand signal of unique reads) 81.0 MB
ENCFF802PCQ.bigWig bigWig (minus strand signal of all reads) 75.6 MB
ENCFF803OYE.bigWig bigWig (minus strand signal of all reads) 78.5 MB
ENCFF815BKL.bigWig bigWig (plus strand signal of all reads) 81.4 MB
ENCFF819ZVR.bigWig bigWig (minus strand signal of unique reads) 79.3 MB
ENCFF826GBE.bigWig bigWig (plus strand signal of unique reads) 82.1 MB
ENCFF832LOV.bam bam (alignments) 3.6 GB
ENCFF854SHH.tsv tsv (transcript quantifications) 24.9 MB
ENCFF864LSA.bigWig bigWig (plus strand signal of unique reads) 81.9 MB
ENCFF865DAA.bigWig bigWig (minus strand signal of unique reads) 69.0 MB
ENCFF872UCZ.bam bam (transcriptome alignments) 4.8 GB
ENCFF874XTH.bigWig bigWig (plus strand signal of all reads) 76.5 MB
ENCFF875VFE.tsv tsv (transcript quantifications) 27.3 MB
ENCFF887FEH.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF890PGK.bigWig bigWig (minus strand signal of all reads) 90.5 MB
ENCFF931WDN.tsv tsv (gene quantifications) 10.4 MB
ENCFF932IYT.tar tar (differential splicing quantifications) 16.1 MB
ENCFF935WRI.bigWig bigWig (plus strand signal of all reads) 77.1 MB
ENCFF945HAF.bigWig bigWig (plus strand signal of all reads) 91.9 MB
ENCFF969HGD.bam bam (transcriptome alignments) 5.0 GB
ENCFF987ZPN.bigWig bigWig (plus strand signal of all reads) 79.8 MB
ENCFF992FPY.bam bam (alignments) 4.4 GB
ENCSR081XRA ENCSR · via encode_api

shRNA knockdown against SF3B4 in K562 cells followed by RNA-seq. (SF3B4-LV08)

Homo sapiens

92 data files
FileTypeSize
ENCFF003MZI.bam bam (alignments) 3.8 GB
ENCFF010QBP.tsv tsv (gene quantifications) 10.4 MB
ENCFF024UCE.tsv tsv (gene quantifications) 9.4 MB
ENCFF043FJK.fastq fastq (reads) 2.4 GB
ENCFF045EJP.bigWig bigWig (plus strand signal of unique reads) 89.4 MB
ENCFF061ENZ.bigWig bigWig (minus strand signal of all reads) 86.1 MB
ENCFF084OZD.bigWig bigWig (plus strand signal of all reads) 79.3 MB
ENCFF089IKC.bigWig bigWig (plus strand signal of unique reads) 78.2 MB
ENCFF111PKQ.bigWig bigWig (plus strand signal of all reads) 103.3 MB
ENCFF139XBL.bigWig bigWig (minus strand signal of all reads) 77.3 MB
ENCFF143SRK.fastq fastq (reads) 2.4 GB
ENCFF147QKG.fastq fastq (reads) 2.1 GB
ENCFF148OHQ.bam bam (transcriptome alignments) 4.6 GB
ENCFF158LCW.bam bam (alignments) 3.9 GB
ENCFF164VVS.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF168FWD.bigWig bigWig (minus strand signal of all reads) 81.8 MB
ENCFF182VYM.bigWig bigWig (plus strand signal of all reads) 106.1 MB
ENCFF185DEZ.bigWig bigWig (minus strand signal of unique reads) 92.4 MB
ENCFF192HSR.bigWig bigWig (plus strand signal of unique reads) 84.2 MB
ENCFF204AYO.bigWig bigWig (minus strand signal of unique reads) 81.3 MB
ENCFF220XVG.tsv tsv (gene quantifications) 10.4 MB
ENCFF221RMA.bigWig bigWig (plus strand signal of all reads) 93.4 MB
ENCFF234PNU.bam bam (alignments) 4.0 GB
ENCFF245KHH.tsv tsv (transcript quantifications) 25.3 MB
ENCFF249MNS.bigWig bigWig (minus strand signal of unique reads) 76.7 MB
ENCFF249VFZ.tsv tsv (gene quantifications) 9.1 MB
ENCFF275PXK.bigWig bigWig (minus strand signal of unique reads) 79.5 MB
ENCFF278WOR.tsv tsv (transcript quantifications) 27.3 MB
ENCFF293IYU.bigWig bigWig (minus strand signal of unique reads) 81.4 MB
ENCFF306LGJ.tar tar (differential splicing quantifications) 4.9 MB
ENCFF336ZIM.bam bam (transcriptome alignments) 4.7 GB
ENCFF339KJJ.bam bam (alignments) 4.7 GB
ENCFF370YAP.bigWig bigWig (minus strand signal of unique reads) 70.6 MB
ENCFF375HRX.bam bam (alignments) 3.8 GB
ENCFF385YRV.tsv tsv (gene quantifications) 9.4 MB
ENCFF404KAI.bigWig bigWig (plus strand signal of unique reads) 95.3 MB
ENCFF424YII.bigWig bigWig (plus strand signal of all reads) 83.6 MB
ENCFF426KUX.tar tar (differential splicing quantifications) 13.8 MB
ENCFF428LKL.bigWig bigWig (plus strand signal of unique reads) 94.1 MB
ENCFF429NVT.bigWig bigWig (plus strand signal of all reads) 93.5 MB
ENCFF437NAB.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF452NES.tsv tsv (transcript quantifications) 25.3 MB
ENCFF454LPD.bam bam (transcriptome alignments) 5.1 GB
ENCFF454UXB.bam bam (alignments) 3.9 GB
ENCFF457SHF.fastq fastq (reads) 2.1 GB
ENCFF515LGR.bigWig bigWig (plus strand signal of unique reads) 95.3 MB
ENCFF517NWB.bigWig bigWig (plus strand signal of unique reads) 82.4 MB
ENCFF551LCS.bigWig bigWig (plus strand signal of unique reads) 84.9 MB
ENCFF563LEM.tsv tsv (transcript quantifications) 29.8 MB
ENCFF574JLR.bigWig bigWig (minus strand signal of all reads) 92.8 MB
ENCFF588UKB.tar tar (differential splicing quantifications) 3.9 MB
ENCFF621AFW.bam bam (alignments) 3.3 GB
ENCFF625LXU.bam bam (transcriptome alignments) 4.1 GB
ENCFF627AIT.bigWig bigWig (minus strand signal of all reads) 104.1 MB
ENCFF629KIN.bigWig bigWig (minus strand signal of unique reads) 91.2 MB
ENCFF649ZPL.bigWig bigWig (minus strand signal of all reads) 91.6 MB
ENCFF651CAU.bigWig bigWig (plus strand signal of unique reads) 79.3 MB
ENCFF691ZQJ.bigWig bigWig (plus strand signal of all reads) 106.1 MB
ENCFF696HGX.tsv tsv (differential expression quantifications) 2.7 MB
ENCFF722JEO.bam bam (transcriptome alignments) 4.5 GB
ENCFF727DFK.tsv tsv (transcript quantifications) 29.8 MB
ENCFF730MBP.bam bam (alignments) 4.5 GB
ENCFF737MCO.bigWig bigWig (minus strand signal of all reads) 91.8 MB
ENCFF752NVF.bigWig bigWig (minus strand signal of all reads) 91.6 MB
ENCFF753AAV.bigWig bigWig (minus strand signal of unique reads) 84.7 MB
ENCFF756FHD.bigWig bigWig (minus strand signal of unique reads) 82.3 MB
ENCFF757PII.bigWig bigWig (plus strand signal of all reads) 93.6 MB
ENCFF763PWB.bam bam (alignments) 3.3 GB
ENCFF778FNT.bam bam (alignments) 4.7 GB
ENCFF786KQK.bigWig bigWig (minus strand signal of unique reads) 75.9 MB
ENCFF789HCZ.bigWig bigWig (plus strand signal of unique reads) 88.6 MB
ENCFF791FDJ.bigWig bigWig (plus strand signal of all reads) 95.1 MB
ENCFF792GNY.bigWig bigWig (plus strand signal of all reads) 88.2 MB
ENCFF805CXZ.tsv tsv (transcript quantifications) 27.4 MB
ENCFF827PMX.bam bam (transcriptome alignments) 4.1 GB
ENCFF829VKE.tsv tsv (transcript quantifications) 24.9 MB
ENCFF842UGN.bigWig bigWig (minus strand signal of all reads) 104.0 MB
ENCFF843XPW.bigWig bigWig (plus strand signal of all reads) 85.8 MB
ENCFF854JGW.bigWig bigWig (minus strand signal of all reads) 83.6 MB
ENCFF858XNX.bam bam (alignments) 4.0 GB
ENCFF862GYG.bigWig bigWig (minus strand signal of all reads) 101.3 MB
ENCFF877DNA.bigWig bigWig (plus strand signal of unique reads) 73.2 MB
ENCFF880LYT.bigWig bigWig (plus strand signal of unique reads) 83.9 MB
ENCFF898YNJ.bigWig bigWig (plus strand signal of all reads) 93.5 MB
ENCFF914DOT.tsv tsv (gene quantifications) 9.1 MB
ENCFF925RTK.tsv tsv (differential expression quantifications) 5.4 MB
ENCFF931URP.bigWig bigWig (minus strand signal of all reads) 91.8 MB
ENCFF958WPS.tsv tsv (differential expression quantifications) 4.3 MB
ENCFF960VQB.bam bam (alignments) 3.3 GB
ENCFF962EUM.tsv tsv (transcript quantifications) 24.9 MB
ENCFF977QNH.bigWig bigWig (minus strand signal of unique reads) 92.2 MB
ENCFF980RLK.bigWig bigWig (minus strand signal of unique reads) 85.9 MB
ENCSR831YGP ENCSR · via encode_api

shRNA knockdown against EWSR1 in K562 cells followed by RNA-seq. (EWSR1-LV08)

Homo sapiens

92 data files
FileTypeSize
ENCFF002SZX.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF003SNZ.bigWig bigWig (plus strand signal of unique reads) 79.5 MB
ENCFF004TES.fastq fastq (reads) 2.4 GB
ENCFF012NGD.bam bam (alignments) 4.7 GB
ENCFF027HFK.bigWig bigWig (plus strand signal of unique reads) 61.1 MB
ENCFF052OAK.bigWig bigWig (plus strand signal of all reads) 64.6 MB
ENCFF056WFG.bam bam (alignments) 2.5 GB
ENCFF061ENB.bigWig bigWig (plus strand signal of all reads) 73.2 MB
ENCFF077OES.tsv tsv (transcript quantifications) 27.3 MB
ENCFF080DWE.bigWig bigWig (plus strand signal of all reads) 73.6 MB
ENCFF101CUE.bam bam (transcriptome alignments) 3.8 GB
ENCFF112XTI.bigWig bigWig (plus strand signal of unique reads) 84.5 MB
ENCFF119RSN.bigWig bigWig (plus strand signal of unique reads) 80.3 MB
ENCFF128CIF.bam bam (alignments) 3.1 GB
ENCFF154NAH.bam bam (alignments) 4.4 GB
ENCFF160ODU.bigWig bigWig (plus strand signal of all reads) 66.8 MB
ENCFF175WJQ.bigWig bigWig (minus strand signal of all reads) 94.3 MB
ENCFF188DJU.bam bam (transcriptome alignments) 4.9 GB
ENCFF203CYP.bam bam (alignments) 2.5 GB
ENCFF214KGR.bam bam (alignments) 3.1 GB
ENCFF221MJC.bam bam (alignments) 2.5 GB
ENCFF230OXC.tsv tsv (differential expression quantifications) 5.4 MB
ENCFF237RPZ.tsv tsv (differential expression quantifications) 4.2 MB
ENCFF251DLV.bigWig bigWig (minus strand signal of unique reads) 59.4 MB
ENCFF260QEF.tsv tsv (transcript quantifications) 27.4 MB
ENCFF263HDU.bigWig bigWig (minus strand signal of unique reads) 72.4 MB
ENCFF284BRN.bigWig bigWig (plus strand signal of all reads) 62.1 MB
ENCFF288AJS.tar tar (differential splicing quantifications) 3.7 MB
ENCFF295LHI.bigWig bigWig (minus strand signal of all reads) 63.5 MB
ENCFF300SKQ.bam bam (transcriptome alignments) 4.9 GB
ENCFF301KNX.bigWig bigWig (minus strand signal of all reads) 60.6 MB
ENCFF308UUY.bam bam (alignments) 3.8 GB
ENCFF335BGM.bigWig bigWig (plus strand signal of unique reads) 85.6 MB
ENCFF343ROV.bigWig bigWig (minus strand signal of all reads) 72.4 MB
ENCFF347TTF.bam bam (alignments) 3.9 GB
ENCFF363FNS.bigWig bigWig (minus strand signal of unique reads) 62.7 MB
ENCFF383HEO.tsv tsv (differential expression quantifications) 2.8 MB
ENCFF386CLM.bigWig bigWig (plus strand signal of all reads) 84.8 MB
ENCFF387TOH.bigWig bigWig (plus strand signal of all reads) 96.0 MB
ENCFF414UIF.bigWig bigWig (plus strand signal of unique reads) 84.9 MB
ENCFF425ETG.bigWig bigWig (plus strand signal of unique reads) 64.8 MB
ENCFF437UUS.fastq fastq (reads) 1.6 GB
ENCFF443MUL.bigWig bigWig (plus strand signal of unique reads) 74.9 MB
ENCFF451RSU.tsv tsv (gene quantifications) 9.1 MB
ENCFF457BUM.bigWig bigWig (plus strand signal of all reads) 86.6 MB
ENCFF461LDM.bam bam (alignments) 4.7 GB
ENCFF473EBE.bam bam (alignments) 3.7 GB
ENCFF475TUW.tsv tsv (transcript quantifications) 29.8 MB
ENCFF495BXA.bigWig bigWig (minus strand signal of unique reads) 59.4 MB
ENCFF500LJV.tar tar (differential splicing quantifications) 15.3 MB
ENCFF538LMB.bigWig bigWig (plus strand signal of unique reads) 65.4 MB
ENCFF540JUZ.bigWig bigWig (plus strand signal of unique reads) 65.9 MB
ENCFF555WEG.tsv tsv (differential expression quantifications) 1.6 MB
ENCFF572LBQ.bigWig bigWig (minus strand signal of all reads) 84.7 MB
ENCFF589TXX.bam bam (alignments) 2.9 GB
ENCFF598SPU.tsv tsv (gene quantifications) 10.4 MB
ENCFF605JCE.bam bam (transcriptome alignments) 5.5 GB
ENCFF619ZAT.bigWig bigWig (minus strand signal of unique reads) 81.9 MB
ENCFF620KDR.bigWig bigWig (plus strand signal of all reads) 80.8 MB
ENCFF621QZR.bam bam (transcriptome alignments) 3.3 GB
ENCFF630GMV.tsv tsv (transcript quantifications) 24.9 MB
ENCFF633HGM.tsv tsv (gene quantifications) 9.1 MB
ENCFF644DGT.bigWig bigWig (minus strand signal of unique reads) 82.2 MB
ENCFF646WHC.bigWig bigWig (minus strand signal of unique reads) 77.2 MB
ENCFF675LLA.bigWig bigWig (minus strand signal of unique reads) 77.7 MB
ENCFF677GHC.bigWig bigWig (plus strand signal of all reads) 94.7 MB
ENCFF713SEW.bigWig bigWig (plus strand signal of unique reads) 61.4 MB
ENCFF723DXI.bigWig bigWig (minus strand signal of all reads) 65.2 MB
ENCFF744UPD.tsv tsv (transcript quantifications) 29.8 MB
ENCFF746NSI.bam bam (transcriptome alignments) 3.3 GB
ENCFF763ZCI.bigWig bigWig (minus strand signal of all reads) 79.2 MB
ENCFF766MFS.bigWig bigWig (minus strand signal of all reads) 72.4 MB
ENCFF812LUG.tsv tsv (transcript quantifications) 24.8 MB
ENCFF825WHK.bigWig bigWig (minus strand signal of unique reads) 64.0 MB
ENCFF831USN.bigWig bigWig (minus strand signal of unique reads) 63.5 MB
ENCFF856ESX.bigWig bigWig (minus strand signal of all reads) 71.9 MB
ENCFF856ZMJ.bigWig bigWig (minus strand signal of all reads) 83.2 MB
ENCFF857QPT.bigWig bigWig (minus strand signal of unique reads) 83.0 MB
ENCFF876JKH.bigWig bigWig (plus strand signal of all reads) 73.6 MB
ENCFF883FBO.bigWig bigWig (minus strand signal of unique reads) 55.0 MB
ENCFF899NVL.tsv tsv (gene quantifications) 10.4 MB
ENCFF924HRI.bigWig bigWig (plus strand signal of all reads) 96.0 MB
ENCFF932BOE.tsv tsv (gene quantifications) 9.5 MB
ENCFF932XRR.tsv tsv (gene quantifications) 9.4 MB
ENCFF940OLQ.bigWig bigWig (minus strand signal of all reads) 94.3 MB
ENCFF948DRW.fastq fastq (reads) 1.6 GB
ENCFF966BTY.tar tar (differential splicing quantifications) 3.2 MB
ENCFF968IJY.tsv tsv (transcript quantifications) 25.3 MB
ENCFF975FPF.tsv tsv (transcript quantifications) 25.3 MB
ENCFF980IYG.bigWig bigWig (minus strand signal of all reads) 93.0 MB
ENCFF984GTS.fastq fastq (reads) 2.4 GB
ENCFF990DJL.bigWig bigWig (plus strand signal of unique reads) 56.8 MB
ENCSR258MXY ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) input control experiment of IGF2BP1/IMP1

1 data file
FileTypeSize
ENCFF002DGN.fastq fastq (reads) 588.4 MB
ENCSR741ZPT ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) pulldown experiment against PTBP3

14 data files
FileTypeSize
ENCFF002BYJ.fastq fastq (reads) 1.2 GB
ENCFF002BYK.fastq fastq (reads) 1.1 GB
ENCFF002BYL.fastq fastq (reads) 1.4 GB
ENCFF002BYM.fastq fastq (reads) 2.0 GB
ENCFF002BYO.fastq fastq (reads) 1.5 GB
ENCFF002BYP.fastq fastq (reads) 1.3 GB
ENCFF002EVE.tsv tsv (enrichment) 244.0 KB
ENCFF002EVF.tsv tsv (enrichment) 992.0 KB
ENCFF002EVG.tsv tsv (library fraction) 311.6 KB
ENCFF002EVH.tsv tsv (library fraction) 1.2 MB
ENCFF002EVI.tsv tsv (enrichment) 60.0 KB
ENCFF002EVJ.tsv tsv (library fraction) 76.1 KB
ENCFF817UKQ.bed bed (peaks) 667.7 KB
ENCFF988VZT.bed bed (peaks) 789.4 KB
ENCSR462ZJK ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) input control experiment of hnRNPF

1 data file
FileTypeSize
ENCFF002DGG.fastq fastq (reads) 731.7 MB
ENCSR134JRE ENCSR · via encode_api

shRNA knockdown against TARDBP in K562 cells followed by RNA-seq. (TARDBP-LV11)

Homo sapiens

92 data files
FileTypeSize
ENCFF004KLI.bigWig bigWig (plus strand signal of unique reads) 84.9 MB
ENCFF020DDC.bigWig bigWig (minus strand signal of unique reads) 88.6 MB
ENCFF020RIE.tsv tsv (transcript quantifications) 27.4 MB
ENCFF081CPZ.bigWig bigWig (plus strand signal of all reads) 84.9 MB
ENCFF083KNY.bam bam (alignments) 2.6 GB
ENCFF094SOO.bigWig bigWig (minus strand signal of all reads) 83.4 MB
ENCFF100AHO.bigWig bigWig (minus strand signal of unique reads) 83.0 MB
ENCFF112DTJ.tsv tsv (gene quantifications) 9.4 MB
ENCFF127FCR.bigWig bigWig (minus strand signal of all reads) 96.3 MB
ENCFF127GYS.bigWig bigWig (plus strand signal of unique reads) 82.9 MB
ENCFF141CTR.bam bam (alignments) 2.6 GB
ENCFF149CWN.bam bam (transcriptome alignments) 4.1 GB
ENCFF150YOA.bam bam (transcriptome alignments) 4.0 GB
ENCFF152NDZ.bigWig bigWig (minus strand signal of unique reads) 88.7 MB
ENCFF157FGJ.bigWig bigWig (plus strand signal of all reads) 102.4 MB
ENCFF159YTF.bigWig bigWig (minus strand signal of all reads) 101.1 MB
ENCFF162PAG.bigWig bigWig (minus strand signal of unique reads) 83.9 MB
ENCFF174YCA.bigWig bigWig (minus strand signal of unique reads) 72.5 MB
ENCFF175ZVS.bigWig bigWig (minus strand signal of unique reads) 80.8 MB
ENCFF202XMY.bam bam (alignments) 3.5 GB
ENCFF212CJV.bigWig bigWig (plus strand signal of all reads) 85.5 MB
ENCFF227BPN.bigWig bigWig (plus strand signal of all reads) 100.3 MB
ENCFF236UAW.tsv tsv (transcript quantifications) 25.3 MB
ENCFF239VZF.fastq fastq (reads) 2.0 GB
ENCFF241XVR.bigWig bigWig (minus strand signal of all reads) 101.1 MB
ENCFF272PNT.bigWig bigWig (plus strand signal of all reads) 83.1 MB
ENCFF273JYT.bam bam (alignments) 2.7 GB
ENCFF286KZT.bigWig bigWig (plus strand signal of all reads) 97.5 MB
ENCFF325FHM.tsv tsv (gene quantifications) 10.4 MB
ENCFF335VYR.tsv tsv (transcript quantifications) 29.8 MB
ENCFF353YQY.bigWig bigWig (plus strand signal of unique reads) 90.5 MB
ENCFF366RXL.bam bam (transcriptome alignments) 4.2 GB
ENCFF370IHV.bigWig bigWig (plus strand signal of all reads) 88.8 MB
ENCFF378OMQ.bigWig bigWig (minus strand signal of all reads) 78.6 MB
ENCFF378WXE.tsv tsv (transcript quantifications) 25.3 MB
ENCFF380ORY.bigWig bigWig (minus strand signal of unique reads) 81.2 MB
ENCFF386KAD.bigWig bigWig (plus strand signal of all reads) 95.2 MB
ENCFF395OHN.bam bam (alignments) 2.6 GB
ENCFF404VER.tsv tsv (transcript quantifications) 24.9 MB
ENCFF431UCH.bam bam (alignments) 3.5 GB
ENCFF434COT.bigWig bigWig (plus strand signal of all reads) 97.5 MB
ENCFF435KIM.bigWig bigWig (minus strand signal of all reads) 84.0 MB
ENCFF437CZD.bigWig bigWig (minus strand signal of unique reads) 82.7 MB
ENCFF446NFE.tar tar (differential splicing quantifications) 15.8 MB
ENCFF450PXZ.tsv tsv (differential expression quantifications) 1.6 MB
ENCFF461ZYL.bigWig bigWig (plus strand signal of unique reads) 90.6 MB
ENCFF503HFA.bam bam (alignments) 3.5 GB
ENCFF509SZM.bigWig bigWig (plus strand signal of unique reads) 78.4 MB
ENCFF513YBI.fastq fastq (reads) 1.9 GB
ENCFF518FQI.bam bam (transcriptome alignments) 5.0 GB
ENCFF525AWO.bigWig bigWig (minus strand signal of unique reads) 88.3 MB
ENCFF525VJS.bigWig bigWig (minus strand signal of unique reads) 75.5 MB
ENCFF546TAR.bigWig bigWig (plus strand signal of all reads) 90.7 MB
ENCFF552MOW.tar tar (differential splicing quantifications) 4.3 MB
ENCFF555TUL.bigWig bigWig (minus strand signal of unique reads) 76.4 MB
ENCFF572OZA.bigWig bigWig (minus strand signal of all reads) 94.0 MB
ENCFF575ICG.tsv tsv (transcript quantifications) 29.8 MB
ENCFF580BMZ.bigWig bigWig (plus strand signal of unique reads) 78.4 MB
ENCFF583MRK.tsv tsv (gene quantifications) 9.5 MB
ENCFF604UQO.fastq fastq (reads) 1.9 GB
ENCFF608NWU.bigWig bigWig (plus strand signal of unique reads) 83.1 MB
ENCFF624OCC.fastq fastq (reads) 1.8 GB
ENCFF634GSF.bam bam (alignments) 2.7 GB
ENCFF639FVQ.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF640NDE.tsv tsv (differential expression quantifications) 3.0 MB
ENCFF658VSB.bam bam (alignments) 2.7 GB
ENCFF701SOE.bigWig bigWig (plus strand signal of unique reads) 74.5 MB
ENCFF782EXB.bam bam (alignments) 3.4 GB
ENCFF791HZT.bam bam (transcriptome alignments) 4.2 GB
ENCFF807JSC.bigWig bigWig (plus strand signal of unique reads) 85.8 MB
ENCFF808GBK.bigWig bigWig (plus strand signal of unique reads) 77.2 MB
ENCFF826PWJ.tsv tsv (transcript quantifications) 27.4 MB
ENCFF827ISM.tsv tsv (gene quantifications) 9.1 MB
ENCFF833HBV.bigWig bigWig (minus strand signal of all reads) 89.1 MB
ENCFF835RRA.tsv tsv (differential expression quantifications) 5.5 MB
ENCFF847ZKE.bigWig bigWig (minus strand signal of all reads) 87.5 MB
ENCFF849STL.bigWig bigWig (plus strand signal of all reads) 80.0 MB
ENCFF862SYV.bigWig bigWig (minus strand signal of all reads) 96.2 MB
ENCFF867OGE.tar tar (differential splicing quantifications) 5.2 MB
ENCFF874PPK.bigWig bigWig (minus strand signal of all reads) 81.9 MB
ENCFF901UIS.bigWig bigWig (plus strand signal of unique reads) 84.7 MB
ENCFF912LNH.tsv tsv (gene quantifications) 9.1 MB
ENCFF927MWW.tsv tsv (gene quantifications) 10.4 MB
ENCFF932SQZ.bigWig bigWig (minus strand signal of unique reads) 76.4 MB
ENCFF939VQP.bigWig bigWig (minus strand signal of all reads) 99.1 MB
ENCFF942LQX.bam bam (transcriptome alignments) 4.8 GB
ENCFF946EFQ.bigWig bigWig (plus strand signal of unique reads) 90.7 MB
ENCFF946NGE.bam bam (alignments) 3.7 GB
ENCFF953VZX.tsv tsv (transcript quantifications) 24.9 MB
ENCFF957PRJ.bam bam (alignments) 3.7 GB
ENCFF981ZEB.tsv tsv (differential expression quantifications) 4.4 MB
ENCFF994HMY.bigWig bigWig (plus strand signal of all reads) 102.4 MB
ENCSR090VXV ENCSR · via encode_api

eCLIP control experiment on HepG2 against DDX3X

Homo sapiens

8 data files
FileTypeSize
ENCFF027JWE.bigWig bigWig (plus strand signal of unique reads) 32.1 MB
ENCFF060CDK.fastq fastq (reads) 846.1 MB
ENCFF077GQW.bigWig bigWig (minus strand signal of unique reads) 32.3 MB
ENCFF220JYP.fastq fastq (reads) 765.8 MB
ENCFF240BQV.bigWig bigWig (minus strand signal of unique reads) 31.3 MB
ENCFF440HUP.bam bam (alignments) 710.1 MB
ENCFF825RZR.bigWig bigWig (plus strand signal of unique reads) 33.1 MB
ENCFF887TNO.bam bam (alignments) 725.6 MB
ENCSR095SIV ENCSR · via encode_api

eCLIP control experiment on HepG2 against LARP7

Homo sapiens

8 data files
FileTypeSize
ENCFF015FBQ.bam bam (alignments) 262.3 MB
ENCFF029VYS.fastq fastq (reads) 394.8 MB
ENCFF076AKR.fastq fastq (reads) 397.7 MB
ENCFF240QBZ.bam bam (alignments) 263.5 MB
ENCFF549AEN.bigWig bigWig (minus strand signal of unique reads) 12.5 MB
ENCFF590KYU.bigWig bigWig (plus strand signal of unique reads) 13.0 MB
ENCFF792STI.bigWig bigWig (plus strand signal of unique reads) 13.0 MB
ENCFF799FGP.bigWig bigWig (minus strand signal of unique reads) 12.5 MB
ENCSR482AWB ENCSR · via encode_api

eCLIP control experiment on K562 against HNRNPUL1

Homo sapiens

8 data files
FileTypeSize
ENCFF019BLW.bam bam (alignments) 261.8 MB
ENCFF124ADY.bigWig bigWig (plus strand signal of unique reads) 14.3 MB
ENCFF129UTE.fastq fastq (reads) 428.5 MB
ENCFF207FLE.fastq fastq (reads) 410.0 MB
ENCFF388XMR.bigWig bigWig (plus strand signal of unique reads) 14.5 MB
ENCFF595REQ.bigWig bigWig (minus strand signal of unique reads) 13.7 MB
ENCFF617UQT.bigWig bigWig (minus strand signal of unique reads) 13.9 MB
ENCFF868UQK.bam bam (alignments) 259.4 MB
ENCSR760SFB ENCSR · via encode_api

eCLIP control experiment on K562 against ILF3

Homo sapiens

8 data files
FileTypeSize
ENCFF184AQO.bam bam (alignments) 497.1 MB
ENCFF495ZOZ.fastq fastq (reads) 532.4 MB
ENCFF535YZW.fastq fastq (reads) 531.2 MB
ENCFF556NKL.bigWig bigWig (minus strand signal of unique reads) 22.1 MB
ENCFF629QUA.bigWig bigWig (plus strand signal of unique reads) 22.9 MB
ENCFF715OWV.bam bam (alignments) 495.5 MB
ENCFF753HRL.bigWig bigWig (minus strand signal of unique reads) 22.2 MB
ENCFF900PEG.bigWig bigWig (plus strand signal of unique reads) 23.0 MB
ENCSR456ASB ENCSR · via encode_api

eCLIP experiment on K562 against UPF1

Homo sapiens

36 data files
FileTypeSize
ENCFF053DWE.bigBed bigBed (peaks) 2.7 MB
ENCFF107ESG.bigBed bigBed (peaks) 2.7 MB
ENCFF119DJS.bam bam (alignments) 261.8 MB
ENCFF170KCT.fastq fastq (reads) 355.0 MB
ENCFF174FBV.bam bam (alignments) 311.4 MB
ENCFF299YME.bigBed bigBed (peaks) 2.2 MB
ENCFF346DUT.bigBed bigBed (peaks) 2.8 MB
ENCFF373CCG.bed bed (peaks) 864.6 KB
ENCFF425NCO.fastq fastq (reads) 360.6 MB
ENCFF433CWN.bigWig bigWig (minus strand signal of unique reads) 15.4 MB
ENCFF466HWF.fastq fastq (reads) 367.7 MB
ENCFF493EKO.fastq fastq (reads) 362.4 MB
ENCFF518MSP.bed bed (peaks) 1.1 MB
ENCFF597NVR.bed bed (peaks) 315.8 KB
ENCFF668YCA.bed bed (peaks) 375.7 KB
ENCFF679ADZ.bigWig bigWig (minus strand signal of unique reads) 15.7 MB
ENCFF684MFT.bigWig bigWig (plus strand signal of unique reads) 16.0 MB
ENCFF696ORH.bigWig bigWig (plus strand signal of unique reads) 13.8 MB
ENCFF701TPG.bam bam (alignments) 300.6 MB
ENCFF707BGL.bed bed (peaks) 1.4 MB
ENCFF740ACZ.bigBed bigBed (peaks) 1.9 MB
ENCFF792HYY.bed bed (peaks) 1.4 MB
ENCFF799UKK.bed bed (peaks) 385.9 KB
ENCFF814JGE.bed bed (peaks) 317.3 KB
ENCFF847ILS.bed bed (peaks) 890.0 KB
ENCFF855FDZ.bigBed bigBed (peaks) 2.9 MB
ENCFF873FZT.bed bed (peaks) 1.2 MB
ENCFF892KAG.bigWig bigWig (minus strand signal of unique reads) 13.5 MB
ENCFF892NTJ.bigBed bigBed (peaks) 914.4 KB
ENCFF911ITL.bigBed bigBed (peaks) 2.2 MB
ENCFF935WLO.bigWig bigWig (plus strand signal of unique reads) 16.4 MB
ENCFF948AOR.bam bam (alignments) 247.2 MB
ENCFF964TKW.bigWig bigWig (minus strand signal of unique reads) 13.1 MB
ENCFF971UYV.bigBed bigBed (peaks) 1.9 MB
ENCFF985USP.bigBed bigBed (peaks) 925.7 KB
ENCFF992STI.bigWig bigWig (plus strand signal of unique reads) 14.3 MB
ENCSR599EMY ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) input control experiment of HNRNPDL and RBM15B

1 data file
FileTypeSize
ENCFF969DHV.fastq fastq (reads) 288.9 MB
ENCSR671FKF ENCSR · via encode_api

eCLIP control experiment on HepG2 against FASTKD2

Homo sapiens

8 data files
FileTypeSize
ENCFF189FJO.fastq fastq (reads) 923.1 MB
ENCFF202HGO.fastq fastq (reads) 846.0 MB
ENCFF217NZS.bam bam (alignments) 736.2 MB
ENCFF363UTN.bigWig bigWig (minus strand signal of unique reads) 31.6 MB
ENCFF526MAE.bigWig bigWig (plus strand signal of unique reads) 32.2 MB
ENCFF585BNE.bam bam (alignments) 745.2 MB
ENCFF719RVW.bigWig bigWig (plus strand signal of unique reads) 32.5 MB
ENCFF843QTA.bigWig bigWig (minus strand signal of unique reads) 32.0 MB
ENCSR598GKQ ENCSR · via encode_api

RNA-seq on HepG2 cells treated with an shRNA knockdown against DDX59. (DDX59_BGHLV35)

Homo sapiens

92 data files
FileTypeSize
ENCFF016CLI.bam bam (transcriptome alignments) 7.3 GB
ENCFF032QRJ.bam bam (alignments) 5.4 GB
ENCFF033TWX.bam bam (transcriptome alignments) 7.4 GB
ENCFF043RGC.bigWig bigWig (minus strand signal of unique reads) 71.3 MB
ENCFF072QAT.fastq fastq (reads) 3.8 GB
ENCFF074OHH.bigWig bigWig (minus strand signal of unique reads) 65.7 MB
ENCFF075TUA.bigWig bigWig (minus strand signal of unique reads) 69.2 MB
ENCFF079JDW.tar tar (differential splicing quantifications) 15.1 MB
ENCFF089NND.bigWig bigWig (minus strand signal of all reads) 68.1 MB
ENCFF095XKB.bigWig bigWig (plus strand signal of all reads) 81.6 MB
ENCFF115NBA.tsv tsv (transcript quantifications) 25.0 MB
ENCFF133DDT.bam bam (transcriptome alignments) 8.2 GB
ENCFF139LDO.bigWig bigWig (plus strand signal of all reads) 84.2 MB
ENCFF146JUT.bigWig bigWig (plus strand signal of unique reads) 72.8 MB
ENCFF150SWY.bigWig bigWig (minus strand signal of unique reads) 73.8 MB
ENCFF150ZMV.tar tar (differential splicing quantifications) 3.2 MB
ENCFF156NZJ.bam bam (alignments) 5.1 GB
ENCFF168BOF.tsv tsv (transcript quantifications) 29.9 MB
ENCFF177WPG.bigWig bigWig (plus strand signal of all reads) 80.8 MB
ENCFF179KHR.fastq fastq (reads) 3.7 GB
ENCFF181GYZ.bigWig bigWig (plus strand signal of unique reads) 69.4 MB
ENCFF186QTF.bigWig bigWig (plus strand signal of all reads) 81.6 MB
ENCFF187MQU.bigWig bigWig (minus strand signal of all reads) 80.0 MB
ENCFF200KDG.bigWig bigWig (minus strand signal of all reads) 68.8 MB
ENCFF201XQE.bam bam (alignments) 5.1 GB
ENCFF228NAK.bam bam (alignments) 6.0 GB
ENCFF233RYK.tsv tsv (differential expression quantifications) 4.3 MB
ENCFF241CHA.bigWig bigWig (plus strand signal of unique reads) 76.2 MB
ENCFF248QCO.bigWig bigWig (plus strand signal of all reads) 85.8 MB
ENCFF259TXP.bigWig bigWig (minus strand signal of unique reads) 74.0 MB
ENCFF272EIH.tsv tsv (differential expression quantifications) 2.0 MB
ENCFF277DTA.bam bam (alignments) 5.4 GB
ENCFF277HLY.bigWig bigWig (minus strand signal of all reads) 73.0 MB
ENCFF306GIG.tsv tsv (gene quantifications) 9.5 MB
ENCFF308WEO.bigWig bigWig (minus strand signal of unique reads) 66.1 MB
ENCFF329MEI.bam bam (transcriptome alignments) 7.2 GB
ENCFF333IJJ.bam bam (alignments) 6.5 GB
ENCFF340JFH.tar tar (differential splicing quantifications) 3.9 MB
ENCFF430NSX.tsv tsv (gene quantifications) 9.1 MB
ENCFF435WBC.fastq fastq (reads) 3.4 GB
ENCFF439BAW.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF441DHZ.bigWig bigWig (plus strand signal of all reads) 75.8 MB
ENCFF445WUA.bigWig bigWig (minus strand signal of unique reads) 74.7 MB
ENCFF459UCM.bigWig bigWig (plus strand signal of unique reads) 68.0 MB
ENCFF470OHM.bigWig bigWig (plus strand signal of unique reads) 66.8 MB
ENCFF475LCD.tsv tsv (transcript quantifications) 29.9 MB
ENCFF539LKD.bam bam (transcriptome alignments) 8.3 GB
ENCFF548TSV.tsv tsv (transcript quantifications) 25.4 MB
ENCFF555FTR.bigWig bigWig (plus strand signal of all reads) 69.5 MB
ENCFF565NPQ.bigWig bigWig (plus strand signal of all reads) 73.7 MB
ENCFF586LYQ.tsv tsv (gene quantifications) 10.4 MB
ENCFF626ZWY.bigWig bigWig (minus strand signal of unique reads) 67.6 MB
ENCFF641MEG.tsv tsv (transcript quantifications) 27.3 MB
ENCFF653TFV.bigWig bigWig (minus strand signal of all reads) 74.3 MB
ENCFF664FKY.bigWig bigWig (minus strand signal of unique reads) 65.0 MB
ENCFF672KBO.bigWig bigWig (minus strand signal of all reads) 84.1 MB
ENCFF677YKK.bigWig bigWig (minus strand signal of all reads) 72.2 MB
ENCFF678CLF.bigWig bigWig (plus strand signal of all reads) 72.6 MB
ENCFF709UNF.bigWig bigWig (plus strand signal of all reads) 70.1 MB
ENCFF711GVB.bam bam (transcriptome alignments) 7.3 GB
ENCFF726XIG.bigWig bigWig (minus strand signal of all reads) 79.3 MB
ENCFF736EFH.bigWig bigWig (plus strand signal of unique reads) 67.6 MB
ENCFF738YWS.tsv tsv (transcript quantifications) 25.4 MB
ENCFF740OXE.tsv tsv (gene quantifications) 9.1 MB
ENCFF740WMS.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF754XZE.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF758OEN.tsv tsv (transcript quantifications) 27.4 MB
ENCFF788UZU.bigWig bigWig (minus strand signal of unique reads) 70.6 MB
ENCFF794LVR.bam bam (alignments) 6.1 GB
ENCFF802SDT.bam bam (alignments) 6.4 GB
ENCFF806GGW.bam bam (alignments) 5.4 GB
ENCFF806OMI.bigWig bigWig (plus strand signal of unique reads) 71.1 MB
ENCFF812WSU.bam bam (alignments) 6.1 GB
ENCFF814HNO.fastq fastq (reads) 3.5 GB
ENCFF824LWZ.bigWig bigWig (plus strand signal of unique reads) 73.5 MB
ENCFF842LYV.bigWig bigWig (plus strand signal of all reads) 74.4 MB
ENCFF842NAK.tsv tsv (gene quantifications) 10.4 MB
ENCFF852KCS.tsv tsv (transcript quantifications) 25.0 MB
ENCFF852WSV.bigWig bigWig (plus strand signal of unique reads) 73.5 MB
ENCFF872BOG.bigWig bigWig (plus strand signal of all reads) 85.7 MB
ENCFF889VUT.bigWig bigWig (minus strand signal of all reads) 82.7 MB
ENCFF890FAZ.bam bam (alignments) 5.1 GB
ENCFF891NGB.bigWig bigWig (minus strand signal of all reads) 80.0 MB
ENCFF912UGZ.bigWig bigWig (plus strand signal of unique reads) 64.0 MB
ENCFF912ZAW.bigWig bigWig (plus strand signal of unique reads) 76.9 MB
ENCFF919ARS.bigWig bigWig (minus strand signal of all reads) 84.1 MB
ENCFF924MPO.bigWig bigWig (minus strand signal of all reads) 71.1 MB
ENCFF940DPT.bam bam (alignments) 6.5 GB
ENCFF956ZZC.bigWig bigWig (minus strand signal of unique reads) 71.3 MB
ENCFF969CIF.bigWig bigWig (minus strand signal of unique reads) 62.2 MB
ENCFF991SUI.tsv tsv (gene quantifications) 9.5 MB
ENCFF992WIS.bigWig bigWig (plus strand signal of unique reads) 76.0 MB
ENCSR629MQN ENCSR · via encode_api

eCLIP control experiment on HepG2 against SRSF7

Homo sapiens

8 data files
FileTypeSize
ENCFF043KVQ.fastq fastq (reads) 317.4 MB
ENCFF160TWL.bam bam (alignments) 180.5 MB
ENCFF586AZF.bam bam (alignments) 180.0 MB
ENCFF611KBN.fastq fastq (reads) 325.5 MB
ENCFF678FIY.bigWig bigWig (minus strand signal of unique reads) 6.4 MB
ENCFF733ZLW.bigWig bigWig (minus strand signal of unique reads) 6.3 MB
ENCFF826HSS.bigWig bigWig (plus strand signal of unique reads) 6.5 MB
ENCFF965POO.bigWig bigWig (plus strand signal of unique reads) 6.5 MB
ENCSR044NGV ENCSR · via encode_api

eCLIP control experiment on HepG2 against XRCC6

Homo sapiens

8 data files
FileTypeSize
ENCFF295ORV.bigWig bigWig (plus strand signal of unique reads) 15.0 MB
ENCFF350VUK.bam bam (alignments) 271.1 MB
ENCFF574XRV.fastq fastq (reads) 559.1 MB
ENCFF594ZPR.bam bam (alignments) 275.1 MB
ENCFF656XSL.fastq fastq (reads) 573.2 MB
ENCFF900QBB.bigWig bigWig (minus strand signal of unique reads) 14.5 MB
ENCFF948HJP.bigWig bigWig (plus strand signal of unique reads) 15.3 MB
ENCFF976AHI.bigWig bigWig (minus strand signal of unique reads) 14.7 MB
ENCSR583KVR ENCSR · via encode_api

eCLIP control experiment on HepG2 against XPO5

Homo sapiens

8 data files
FileTypeSize
ENCFF039AMW.bam bam (alignments) 758.7 MB
ENCFF161GQY.fastq fastq (reads) 857.3 MB
ENCFF311IKR.bigWig bigWig (minus strand signal of unique reads) 33.9 MB
ENCFF351CZY.bigWig bigWig (plus strand signal of unique reads) 34.8 MB
ENCFF491CRL.fastq fastq (reads) 783.0 MB
ENCFF525ZJX.bigWig bigWig (plus strand signal of unique reads) 34.5 MB
ENCFF842ISA.bigWig bigWig (minus strand signal of unique reads) 34.6 MB
ENCFF986QCU.bam bam (alignments) 766.8 MB
ENCSR393STP ENCSR · via encode_api

eCLIP control experiment on K562 against GPKOW

Homo sapiens

8 data files
FileTypeSize
ENCFF159YLX.bigWig bigWig (plus strand signal of unique reads) 32.1 MB
ENCFF216XJZ.fastq fastq (reads) 807.5 MB
ENCFF333OLY.bam bam (alignments) 747.1 MB
ENCFF365XIH.bigWig bigWig (minus strand signal of unique reads) 31.1 MB
ENCFF405MAR.bigWig bigWig (minus strand signal of unique reads) 31.9 MB
ENCFF438MJE.bigWig bigWig (plus strand signal of unique reads) 32.9 MB
ENCFF821KVN.fastq fastq (reads) 903.4 MB
ENCFF914HZF.bam bam (alignments) 728.8 MB
ENCSR905BJK ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) pulldown experiment against RBM4B

12 data files
FileTypeSize
ENCFF009TPD.tsv tsv (library fraction) 52.2 KB
ENCFF030UYE.fastq fastq (reads) 339.2 MB
ENCFF170CFD.tsv tsv (enrichment) 8.3 KB
ENCFF324AVV.tsv tsv (enrichment) 34.0 KB
ENCFF414MZG.fastq fastq (reads) 339.0 MB
ENCFF471UTH.tsv tsv (library fraction) 888.9 KB
ENCFF604EQA.tsv tsv (enrichment) 576.0 KB
ENCFF642LIU.fastq fastq (reads) 545.8 MB
ENCFF723LYO.tsv tsv (enrichment) 140.0 KB
ENCFF852LOZ.tsv tsv (library fraction) 12.3 KB
ENCFF933GYK.fastq fastq (reads) 441.1 MB
ENCFF999HWQ.tsv tsv (library fraction) 218.1 KB
ENCSR193UFP ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) input control experiment of HNRNPA2B1

1 data file
FileTypeSize
ENCFF284GGX.fastq fastq (reads) 364.1 MB
ENCSR496UBM ENCSR · via encode_api

eCLIP control experiment on K562 against SF3B1

Homo sapiens

8 data files
FileTypeSize
ENCFF077NTL.bigWig bigWig (plus strand signal of unique reads) 50.4 MB
ENCFF185ZHX.fastq fastq (reads) 963.4 MB
ENCFF212RSI.bigWig bigWig (minus strand signal of unique reads) 48.9 MB
ENCFF231PYQ.fastq fastq (reads) 1009.1 MB
ENCFF293CBE.bigWig bigWig (plus strand signal of unique reads) 49.3 MB
ENCFF359HHB.bam bam (alignments) 1.1 GB
ENCFF865PNX.bam bam (alignments) 1.1 GB
ENCFF874XJB.bigWig bigWig (minus strand signal of unique reads) 47.9 MB
ENCSR310VND ENCSR · via encode_api

shRNA knockdown against RECQL in K562 cells followed by RNA-seq. (RECQL-LV08)

Homo sapiens

92 data files
FileTypeSize
ENCFF004USN.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 67.8 MB
ENCFF005VAY.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 3.6 GB
ENCFF007BMS.bam bam (alignments); assembly: GRCh38; genome annotation: V29 4.1 GB
ENCFF020ATL.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.2 GB
ENCFF040XCB.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF058RLC.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.3 MB
ENCFF062NYD.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF065EST.bam bam (alignments); assembly: hg19; genome annotation: V19 4.0 GB
ENCFF073TJZ.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 87.1 MB
ENCFF076OLW.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF077QIU.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 61.0 MB
ENCFF094YSH.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 59.3 MB
ENCFF096ZGE.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 87.5 MB
ENCFF118AAD.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 65.7 MB
ENCFF118DDZ.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF127HAY.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 3.0 MB
ENCFF127VPZ.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.4 GB
ENCFF129TNW.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 5.4 MB
ENCFF135QPT.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 88.4 MB
ENCFF152XZQ.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF199OJZ.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 64.2 MB
ENCFF211NSS.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 68.3 MB
ENCFF217TBG.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 78.8 MB
ENCFF218HYM.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 78.3 MB
ENCFF227NAO.fastq fastq (reads) 1.7 GB
ENCFF261GNB.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 66.6 MB
ENCFF274CWP.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 87.1 MB
ENCFF274WNP.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 66.2 MB
ENCFF275GDI.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 76.9 MB
ENCFF276HFC.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 4.4 GB
ENCFF321LQW.fastq fastq (reads) 2.2 GB
ENCFF334FAB.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 67.6 MB
ENCFF342YCV.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 77.3 MB
ENCFF349ZDA.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 57.5 MB
ENCFF360NMV.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 70.3 MB
ENCFF379OLQ.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 66.1 MB
ENCFF384NYT.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 67.9 MB
ENCFF393DBN.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 75.3 MB
ENCFF400BBN.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 67.9 MB
ENCFF404AUO.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 62.9 MB
ENCFF429EAD.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 4.1 MB
ENCFF437IQM.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF451WVX.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 78.9 MB
ENCFF463XQI.bam bam (alignments); assembly: GRCh38; genome annotation: V24 2.6 GB
ENCFF494MZL.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 66.0 MB
ENCFF511KJP.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF519NPR.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 88.3 MB
ENCFF541FGC.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 3.5 GB
ENCFF565ASD.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 72.7 MB
ENCFF569LBP.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 73.8 MB
ENCFF583RSI.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.9 MB
ENCFF595LEX.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 77.6 MB
ENCFF609OAB.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.9 MB
ENCFF610LJV.fastq fastq (reads) 1.7 GB
ENCFF617GYZ.bam bam (alignments); assembly: hg19; genome annotation: V19 3.3 GB
ENCFF617IGC.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF617XDE.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 13.9 MB
ENCFF626FXO.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 86.2 MB
ENCFF631GGD.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 79.5 MB
ENCFF645PBX.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 74.8 MB
ENCFF651OSW.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.1 GB
ENCFF652CRJ.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF668ZFV.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 78.8 MB
ENCFF675XGE.bam bam (alignments); assembly: hg19; genome annotation: V19 2.6 GB
ENCFF687BXI.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 4.5 GB
ENCFF704VQW.bam bam (alignments); assembly: hg19; genome annotation: V19 3.1 GB
ENCFF720GQI.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 62.8 MB
ENCFF726EPO.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF778PVA.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 76.8 MB
ENCFF784CVR.bam bam (alignments); assembly: hg19; genome annotation: V19 3.3 GB
ENCFF800SWK.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 69.0 MB
ENCFF815YUU.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 75.2 MB
ENCFF820JPQ.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 76.3 MB
ENCFF820PTK.bam bam (alignments); assembly: hg19; genome annotation: V19 2.6 GB
ENCFF824NZY.fastq fastq (reads) 2.1 GB
ENCFF827OKC.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.3 MB
ENCFF828GXG.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 3.4 MB
ENCFF841MGZ.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 75.2 MB
ENCFF854ZCN.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 72.2 MB
ENCFF874KUP.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 62.4 MB
ENCFF884GRO.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF887KZW.bam bam (alignments); assembly: GRCh38; genome annotation: V29 3.2 GB
ENCFF894ZLU.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 79.9 MB
ENCFF918AAP.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 5.0 GB
ENCFF922MXO.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 73.8 MB
ENCFF925KCY.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 60.9 MB
ENCFF928APS.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 76.3 MB
ENCFF930MMJ.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF931RYH.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 4.0 GB
ENCFF934KXG.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 74.9 MB
ENCFF974XKN.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 74.0 MB
ENCFF989IXA.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.8 MB
ENCSR051IXX ENCSR · via encode_api

eCLIP control experiment on K562 against RBFOX2

Homo sapiens

8 data files
FileTypeSize
ENCFF045FUV.bam bam (alignments) 446.8 MB
ENCFF196XJX.bigWig bigWig (plus strand signal of unique reads) 22.1 MB
ENCFF212IIR.bam bam (alignments) 452.9 MB
ENCFF217IRF.bigWig bigWig (minus strand signal of unique reads) 21.2 MB
ENCFF290PDJ.bigWig bigWig (plus strand signal of unique reads) 22.7 MB
ENCFF421XME.bigWig bigWig (minus strand signal of unique reads) 21.6 MB
ENCFF492QZU.fastq fastq (reads) 538.0 MB
ENCFF495WQA.fastq fastq (reads) 582.4 MB
ENCSR264TUE ENCSR · via encode_api

Control shRNA against no target in HepG2 cells followed by RNA-seq. (NT_BGHLV35)

Homo sapiens

84 data files
FileTypeSize
ENCFF007VJQ.bigWig bigWig (plus strand signal of all reads) 83.2 MB
ENCFF011TBG.bam bam (transcriptome alignments) 6.7 GB
ENCFF016CWY.bam bam (transcriptome alignments) 6.6 GB
ENCFF016HPZ.bigWig bigWig (minus strand signal of all reads) 81.5 MB
ENCFF019JYU.tsv tsv (gene quantifications) 9.5 MB
ENCFF021NQD.bam bam (alignments) 6.2 GB
ENCFF031UPB.tsv tsv (transcript quantifications) 25.0 MB
ENCFF032JQZ.fastq fastq (reads) 3.5 GB
ENCFF088GTC.bigWig bigWig (plus strand signal of all reads) 76.5 MB
ENCFF089DQP.bigWig bigWig (minus strand signal of all reads) 73.6 MB
ENCFF108SOG.bigWig bigWig (plus strand signal of unique reads) 61.1 MB
ENCFF134WBJ.bam bam (alignments) 5.1 GB
ENCFF164FEC.bigWig bigWig (plus strand signal of all reads) 82.5 MB
ENCFF185IAD.bam bam (alignments) 5.7 GB
ENCFF188HRA.bigWig bigWig (minus strand signal of unique reads) 61.6 MB
ENCFF191JJU.fastq fastq (reads) 3.5 GB
ENCFF206DTQ.tsv tsv (transcript quantifications) 25.4 MB
ENCFF218PLN.bigWig bigWig (minus strand signal of all reads) 74.4 MB
ENCFF226FEH.bigWig bigWig (plus strand signal of unique reads) 66.9 MB
ENCFF231NKH.bam bam (alignments) 5.1 GB
ENCFF247JGP.bigWig bigWig (plus strand signal of all reads) 73.8 MB
ENCFF256MVK.bigWig bigWig (minus strand signal of unique reads) 61.1 MB
ENCFF266FUK.bigWig bigWig (minus strand signal of all reads) 74.8 MB
ENCFF293RIK.bam bam (alignments) 6.1 GB
ENCFF295JOF.bigWig bigWig (minus strand signal of unique reads) 72.5 MB
ENCFF296ARF.bam bam (transcriptome alignments) 7.3 GB
ENCFF311ACC.tsv tsv (gene quantifications) 10.4 MB
ENCFF321XBV.bigWig bigWig (plus strand signal of all reads) 65.9 MB
ENCFF324NDP.tsv tsv (gene quantifications) 9.1 MB
ENCFF330EXR.bigWig bigWig (plus strand signal of all reads) 76.1 MB
ENCFF369DGT.tsv tsv (transcript quantifications) 27.4 MB
ENCFF373AEB.bigWig bigWig (plus strand signal of unique reads) 68.7 MB
ENCFF375TPO.tsv tsv (gene quantifications) 9.5 MB
ENCFF381YCO.bigWig bigWig (minus strand signal of unique reads) 66.5 MB
ENCFF427IYE.fastq fastq (reads) 3.3 GB
ENCFF443RTR.bam bam (alignments) 4.8 GB
ENCFF453HAF.bigWig bigWig (plus strand signal of unique reads) 73.9 MB
ENCFF462CVQ.bigWig bigWig (plus strand signal of unique reads) 74.8 MB
ENCFF468OMG.bam bam (transcriptome alignments) 7.3 GB
ENCFF471RZK.bigWig bigWig (plus strand signal of unique reads) 69.2 MB
ENCFF491PWT.bigWig bigWig (minus strand signal of unique reads) 67.1 MB
ENCFF500SAO.bigWig bigWig (plus strand signal of unique reads) 63.6 MB
ENCFF501GWD.bigWig bigWig (plus strand signal of unique reads) 68.8 MB
ENCFF503YIO.bam bam (transcriptome alignments) 8.2 GB
ENCFF510XSR.bigWig bigWig (minus strand signal of all reads) 70.9 MB
ENCFF554VFV.fastq fastq (reads) 3.2 GB
ENCFF562MRH.tsv tsv (gene quantifications) 9.1 MB
ENCFF574SGA.bigWig bigWig (plus strand signal of all reads) 75.2 MB
ENCFF577HVA.bigWig bigWig (plus strand signal of all reads) 65.4 MB
ENCFF582URW.tsv tsv (transcript quantifications) 27.3 MB
ENCFF598XEF.tsv tsv (transcript quantifications) 29.9 MB
ENCFF606DOK.bigWig bigWig (plus strand signal of unique reads) 63.0 MB
ENCFF611CHQ.bigWig bigWig (minus strand signal of unique reads) 66.5 MB
ENCFF621AIE.bam bam (alignments) 4.8 GB
ENCFF639RFJ.bam bam (transcriptome alignments) 7.5 GB
ENCFF660BWB.bigWig bigWig (minus strand signal of unique reads) 66.5 MB
ENCFF685WAX.bigWig bigWig (plus strand signal of unique reads) 68.5 MB
ENCFF691KCG.bigWig bigWig (minus strand signal of all reads) 72.0 MB
ENCFF711PHF.bam bam (alignments) 5.1 GB
ENCFF721VYM.bigWig bigWig (minus strand signal of all reads) 69.4 MB
ENCFF723LDQ.bigWig bigWig (plus strand signal of unique reads) 68.6 MB
ENCFF738YFT.bam bam (alignments) 5.7 GB
ENCFF741GSW.bigWig bigWig (plus strand signal of all reads) 83.2 MB
ENCFF783LHK.bigWig bigWig (plus strand signal of all reads) 68.3 MB
ENCFF786BJO.tsv tsv (transcript quantifications) 25.4 MB
ENCFF794KSJ.bigWig bigWig (plus strand signal of all reads) 72.5 MB
ENCFF813LTZ.bigWig bigWig (minus strand signal of all reads) 66.7 MB
ENCFF844KDU.bigWig bigWig (minus strand signal of unique reads) 72.5 MB
ENCFF847IHK.bigWig bigWig (minus strand signal of all reads) 64.4 MB
ENCFF873KLR.tsv tsv (gene quantifications) 10.4 MB
ENCFF879IXQ.bigWig bigWig (minus strand signal of unique reads) 64.8 MB
ENCFF880NNJ.bigWig bigWig (minus strand signal of all reads) 80.8 MB
ENCFF893QAU.bam bam (alignments) 4.8 GB
ENCFF907STF.bigWig bigWig (plus strand signal of all reads) 71.1 MB
ENCFF909XHH.bigWig bigWig (minus strand signal of unique reads) 71.7 MB
ENCFF915WXF.tsv tsv (transcript quantifications) 29.9 MB
ENCFF922SMA.tsv tsv (transcript quantifications) 25.0 MB
ENCFF954ZNP.bigWig bigWig (minus strand signal of unique reads) 66.4 MB
ENCFF955LVH.bigWig bigWig (minus strand signal of unique reads) 59.1 MB
ENCFF958MMI.bam bam (alignments) 6.2 GB
ENCFF958ZWY.bigWig bigWig (plus strand signal of unique reads) 74.8 MB
ENCFF965UPD.bam bam (alignments) 5.7 GB
ENCFF970HER.bigWig bigWig (minus strand signal of all reads) 81.5 MB
ENCFF971KKV.bigWig bigWig (minus strand signal of all reads) 63.9 MB
ENCSR565KBR ENCSR · via encode_api

eCLIP control experiment on HepG2 against PRPF8

Homo sapiens

8 data files
FileTypeSize
ENCFF025IVF.fastq fastq (reads) 621.4 MB
ENCFF492ZTF.bigWig bigWig (plus strand signal of unique reads) 27.8 MB
ENCFF728TGZ.bigWig bigWig (plus strand signal of unique reads) 35.5 MB
ENCFF740ZOK.bigWig bigWig (minus strand signal of unique reads) 34.3 MB
ENCFF818CAZ.bam bam (alignments) 631.5 MB
ENCFF849APG.bam bam (alignments) 627.5 MB
ENCFF974FWQ.bigWig bigWig (minus strand signal of unique reads) 26.9 MB
ENCFF998PYJ.fastq fastq (reads) 647.2 MB
ENCSR635FRH ENCSR · via encode_api

shRNA knockdown against PCBP1 in HepG2 cells followed by RNA-seq. (PCBP1-BGHLV12)

Homo sapiens

92 data files
FileTypeSize
ENCFF011YCX.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.9 MB
ENCFF029VVQ.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 5.6 MB
ENCFF029ZZV.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 77.6 MB
ENCFF045OTW.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 86.4 MB
ENCFF055EXW.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 7.0 GB
ENCFF082AAZ.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 77.4 MB
ENCFF102OXD.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF104YTV.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF139WST.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 81.4 MB
ENCFF147MCL.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 74.3 MB
ENCFF149FCJ.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 88.1 MB
ENCFF165FOY.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 75.1 MB
ENCFF174ZQQ.bam bam (alignments); assembly: hg19; genome annotation: V19 5.8 GB
ENCFF179WXC.bam bam (alignments); assembly: hg19; genome annotation: V19 4.8 GB
ENCFF182DJC.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 88.1 MB
ENCFF182FFM.bam bam (alignments); assembly: hg19; genome annotation: V19 4.8 GB
ENCFF183HTA.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 79.1 MB
ENCFF220AEE.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 79.8 MB
ENCFF220NBI.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.9 MB
ENCFF227CYT.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 73.0 MB
ENCFF237KQB.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 75.5 MB
ENCFF240PVY.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 7.3 GB
ENCFF243WJQ.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 79.8 MB
ENCFF270CWK.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.8 GB
ENCFF276UII.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 88.1 MB
ENCFF279NID.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 75.0 MB
ENCFF279YIM.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 77.4 MB
ENCFF293DPK.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 77.8 MB
ENCFF308JFX.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF319LOX.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.4 MB
ENCFF320AIK.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 4.4 MB
ENCFF321YGV.bam bam (alignments); assembly: hg19; genome annotation: V19 5.0 GB
ENCFF323ZNP.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 79.1 MB
ENCFF333WDT.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 3.4 MB
ENCFF338QOP.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 16.6 MB
ENCFF342COS.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 77.0 MB
ENCFF358RLD.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.8 MB
ENCFF387ERQ.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 78.2 MB
ENCFF389GXH.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF405SQY.fastq fastq (reads) 3.2 GB
ENCFF422MTG.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF445GOQ.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF446NRZ.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF463AMS.bam bam (alignments); assembly: hg19; genome annotation: V19 5.5 GB
ENCFF467QPZ.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 72.3 MB
ENCFF469OHT.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 88.1 MB
ENCFF475LJK.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 78.8 MB
ENCFF516PNW.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 79.3 MB
ENCFF517NFM.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.4 MB
ENCFF535ADX.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 72.5 MB
ENCFF540GDB.bam bam (alignments); assembly: hg19; genome annotation: V19 5.0 GB
ENCFF549UYM.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 72.4 MB
ENCFF557KBK.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 79.6 MB
ENCFF580NNE.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF589NLD.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 80.5 MB
ENCFF598FWX.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 79.6 MB
ENCFF600PTV.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 86.6 MB
ENCFF622BCW.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 81.3 MB
ENCFF629UFG.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 76.9 MB
ENCFF638JKZ.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 79.9 MB
ENCFF653XHK.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 81.3 MB
ENCFF656YKZ.bam bam (alignments); assembly: GRCh38; genome annotation: V24 5.9 GB
ENCFF658AJN.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 85.1 MB
ENCFF680QFQ.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 77.1 MB
ENCFF690TTO.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 75.8 MB
ENCFF691EBE.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 87.9 MB
ENCFF703PUD.fastq fastq (reads) 3.3 GB
ENCFF714CSF.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 70.3 MB
ENCFF720SIH.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 86.4 MB
ENCFF727TSD.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF730YSF.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 82.3 MB
ENCFF734FXZ.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 7.7 GB
ENCFF772XMI.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF777OHT.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 4.2 MB
ENCFF787LUK.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 78.5 MB
ENCFF792RSF.bam bam (alignments); assembly: GRCh38; genome annotation: V29 5.6 GB
ENCFF793CAH.fastq fastq (reads) 3.1 GB
ENCFF820SCB.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 6.9 GB
ENCFF825YNG.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 89.9 MB
ENCFF850ELJ.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 8.1 GB
ENCFF860CKH.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 89.5 MB
ENCFF864WDS.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 77.2 MB
ENCFF880JHQ.bam bam (alignments); assembly: GRCh38; genome annotation: V29 5.9 GB
ENCFF894PPR.fastq fastq (reads) 3.0 GB
ENCFF906TGG.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF912DSB.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 74.4 MB
ENCFF918BEC.bam bam (alignments); assembly: GRCh38; genome annotation: V24 5.6 GB
ENCFF920XMO.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF965TVK.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 89.9 MB
ENCFF966QWE.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 82.1 MB
ENCFF986ALP.bam bam (alignments); assembly: GRCh38; genome annotation: V24 5.1 GB
ENCFF989VYY.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 7.2 GB
ENCSR637JLM ENCSR · via encode_api

shRNA knockdown against DDX3X in HepG2 cells followed by RNA-seq. (DDX3X-BGHLV12)

Homo sapiens

92 data files
FileTypeSize
ENCFF005BRA.bam bam (alignments) 5.1 GB
ENCFF020QLP.bam bam (alignments) 6.6 GB
ENCFF047IDH.bigWig bigWig (minus strand signal of unique reads) 75.7 MB
ENCFF080TBB.tsv tsv (gene quantifications) 10.4 MB
ENCFF085VKK.bigWig bigWig (minus strand signal of all reads) 87.3 MB
ENCFF089HGG.bigWig bigWig (plus strand signal of unique reads) 77.7 MB
ENCFF098RRX.bigWig bigWig (plus strand signal of unique reads) 77.9 MB
ENCFF113LMO.bigWig bigWig (plus strand signal of unique reads) 78.3 MB
ENCFF128LSY.bigWig bigWig (minus strand signal of all reads) 79.5 MB
ENCFF143PWL.tsv tsv (transcript quantifications) 27.4 MB
ENCFF160MRP.fastq fastq (reads) 3.3 GB
ENCFF181KPI.bigWig bigWig (minus strand signal of unique reads) 75.7 MB
ENCFF186DMR.tsv tsv (gene quantifications) 9.1 MB
ENCFF189ICH.bigWig bigWig (minus strand signal of all reads) 87.3 MB
ENCFF196CGJ.bam bam (alignments) 6.3 GB
ENCFF201FHG.bam bam (alignments) 5.0 GB
ENCFF204FDF.bam bam (transcriptome alignments) 8.6 GB
ENCFF212CIU.tsv tsv (transcript quantifications) 25.3 MB
ENCFF238GOD.bigWig bigWig (minus strand signal of all reads) 86.2 MB
ENCFF238QLX.bigWig bigWig (minus strand signal of unique reads) 79.1 MB
ENCFF253PTB.bigWig bigWig (plus strand signal of all reads) 82.5 MB
ENCFF253RJD.bam bam (alignments) 6.2 GB
ENCFF261LSY.tsv tsv (transcript quantifications) 24.9 MB
ENCFF263AEU.bigWig bigWig (plus strand signal of unique reads) 81.1 MB
ENCFF280RJP.bam bam (transcriptome alignments) 8.0 GB
ENCFF282INV.fastq fastq (reads) 3.5 GB
ENCFF313SZE.bigWig bigWig (minus strand signal of all reads) 80.6 MB
ENCFF315EAR.tsv tsv (transcript quantifications) 29.8 MB
ENCFF319ZTP.bigWig bigWig (plus strand signal of all reads) 89.3 MB
ENCFF321XVN.bigWig bigWig (minus strand signal of all reads) 78.3 MB
ENCFF322PQT.bigWig bigWig (minus strand signal of unique reads) 78.8 MB
ENCFF341IGR.fastq fastq (reads) 3.6 GB
ENCFF350AXZ.bam bam (alignments) 6.6 GB
ENCFF355SBZ.tsv tsv (differential expression quantifications) 1.8 MB
ENCFF356OEX.bigWig bigWig (plus strand signal of unique reads) 81.6 MB
ENCFF359LLO.bigWig bigWig (minus strand signal of all reads) 80.0 MB
ENCFF360VFN.bam bam (transcriptome alignments) 9.7 GB
ENCFF376SPT.bigWig bigWig (plus strand signal of all reads) 80.4 MB
ENCFF400UEU.tsv tsv (transcript quantifications) 27.4 MB
ENCFF410TOM.bigWig bigWig (minus strand signal of all reads) 86.9 MB
ENCFF422KOK.bigWig bigWig (minus strand signal of unique reads) 73.9 MB
ENCFF431MTB.tsv tsv (gene quantifications) 9.1 MB
ENCFF446PRX.tsv tsv (transcript quantifications) 24.9 MB
ENCFF456KHF.tsv tsv (differential expression quantifications) 3.0 MB
ENCFF478ITV.tsv tsv (transcript quantifications) 29.8 MB
ENCFF481UNZ.bam bam (alignments) 5.5 GB
ENCFF492KYR.bigWig bigWig (plus strand signal of all reads) 82.7 MB
ENCFF507IMB.tar tar (differential splicing quantifications) 4.3 MB
ENCFF514VVX.bigWig bigWig (plus strand signal of all reads) 87.9 MB
ENCFF529FTB.tsv tsv (transcript quantifications) 25.3 MB
ENCFF537LWN.bigWig bigWig (minus strand signal of unique reads) 79.4 MB
ENCFF551OWT.bigWig bigWig (plus strand signal of unique reads) 81.4 MB
ENCFF572OTL.bam bam (alignments) 5.8 GB
ENCFF575ZFL.tar tar (differential splicing quantifications) 17.0 MB
ENCFF584TER.bigWig bigWig (minus strand signal of all reads) 80.7 MB
ENCFF609SRT.bigWig bigWig (plus strand signal of unique reads) 77.5 MB
ENCFF619CLW.bigWig bigWig (plus strand signal of all reads) 88.8 MB
ENCFF624FID.tar tar (differential splicing quantifications) 3.5 MB
ENCFF630LVX.tsv tsv (gene quantifications) 9.4 MB
ENCFF635UZH.bigWig bigWig (minus strand signal of unique reads) 79.0 MB
ENCFF652ZOP.bigWig bigWig (minus strand signal of unique reads) 75.0 MB
ENCFF654FCB.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF658UHV.bam bam (alignments) 6.2 GB
ENCFF660ANQ.bigWig bigWig (minus strand signal of unique reads) 75.3 MB
ENCFF666NDL.bigWig bigWig (minus strand signal of all reads) 86.9 MB
ENCFF675OVX.bigWig bigWig (plus strand signal of unique reads) 81.7 MB
ENCFF686NII.bam bam (transcriptome alignments) 7.9 GB
ENCFF695MUQ.fastq fastq (reads) 3.3 GB
ENCFF717ACQ.bam bam (alignments) 5.0 GB
ENCFF734QLH.bigWig bigWig (plus strand signal of all reads) 81.5 MB
ENCFF737FBB.bigWig bigWig (plus strand signal of unique reads) 81.7 MB
ENCFF764WKC.bigWig bigWig (plus strand signal of all reads) 88.9 MB
ENCFF766ISF.bigWig bigWig (minus strand signal of unique reads) 79.5 MB
ENCFF768AUH.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF773CLP.bigWig bigWig (plus strand signal of unique reads) 81.4 MB
ENCFF775RWE.bigWig bigWig (plus strand signal of all reads) 82.1 MB
ENCFF778TUW.tsv tsv (gene quantifications) 9.5 MB
ENCFF797LFL.bam bam (alignments) 5.3 GB
ENCFF799XLD.bigWig bigWig (minus strand signal of all reads) 87.0 MB
ENCFF800CIV.bigWig bigWig (minus strand signal of unique reads) 79.4 MB
ENCFF849NBP.bigWig bigWig (plus strand signal of unique reads) 77.0 MB
ENCFF872EDP.tsv tsv (differential expression quantifications) 4.4 MB
ENCFF881POK.bigWig bigWig (plus strand signal of all reads) 88.8 MB
ENCFF889WSK.bigWig bigWig (minus strand signal of unique reads) 75.8 MB
ENCFF899FLU.bigWig bigWig (plus strand signal of unique reads) 76.3 MB
ENCFF900PHG.bigWig bigWig (minus strand signal of all reads) 79.7 MB
ENCFF915BIP.bam bam (transcriptome alignments) 9.0 GB
ENCFF924IVL.tsv tsv (gene quantifications) 10.4 MB
ENCFF955UWH.bam bam (transcriptome alignments) 8.5 GB
ENCFF975SLS.bigWig bigWig (plus strand signal of all reads) 81.3 MB
ENCFF977CRA.bigWig bigWig (plus strand signal of all reads) 89.3 MB
ENCFF977MZX.bam bam (alignments) 5.3 GB
ENCSR347MVO ENCSR · via encode_api

eCLIP control experiment on K562 against GEMIN5

Homo sapiens

8 data files
FileTypeSize
ENCFF064TEN.fastq fastq (reads) 961.7 MB
ENCFF088VVN.bigWig bigWig (minus strand signal of unique reads) 50.0 MB
ENCFF303VEV.bigWig bigWig (plus strand signal of unique reads) 51.8 MB
ENCFF369PJK.bigWig bigWig (plus strand signal of unique reads) 52.4 MB
ENCFF381NWX.fastq fastq (reads) 867.0 MB
ENCFF477FDK.bigWig bigWig (minus strand signal of unique reads) 50.6 MB
ENCFF605CQT.bam bam (alignments) 1.1 GB
ENCFF945AUF.bam bam (alignments) 1.1 GB
ENCSR424QCW ENCSR · via encode_api

Control shRNA against no target in K562 cells followed by RNA-seq. (NT_BGKLV36)

Homo sapiens

84 data files
FileTypeSize
ENCFF006BXK.bigWig bigWig (plus strand signal of unique reads) 58.7 MB
ENCFF006QUW.bam bam (alignments) 4.6 GB
ENCFF028IUT.tsv tsv (transcript quantifications) 25.0 MB
ENCFF039KFB.bigWig bigWig (plus strand signal of all reads) 62.4 MB
ENCFF041CFW.tsv tsv (gene quantifications) 9.5 MB
ENCFF064ABJ.bigWig bigWig (minus strand signal of unique reads) 60.4 MB
ENCFF078MXU.fastq fastq (reads) 2.6 GB
ENCFF080MYM.bigWig bigWig (plus strand signal of all reads) 62.9 MB
ENCFF088HGJ.bigWig bigWig (plus strand signal of all reads) 67.1 MB
ENCFF088NLG.bigWig bigWig (minus strand signal of all reads) 74.7 MB
ENCFF104RZA.bigWig bigWig (plus strand signal of unique reads) 61.2 MB
ENCFF104TWW.bam bam (alignments) 3.9 GB
ENCFF105BFT.tsv tsv (transcript quantifications) 25.4 MB
ENCFF123NCH.tsv tsv (transcript quantifications) 29.9 MB
ENCFF134PKR.bigWig bigWig (plus strand signal of unique reads) 67.0 MB
ENCFF151BPC.bigWig bigWig (plus strand signal of all reads) 76.2 MB
ENCFF155KQK.bigWig bigWig (plus strand signal of all reads) 75.5 MB
ENCFF169JET.bigWig bigWig (minus strand signal of all reads) 75.3 MB
ENCFF172ZXY.bam bam (alignments) 4.7 GB
ENCFF187UBJ.tsv tsv (transcript quantifications) 27.3 MB
ENCFF195MYF.bigWig bigWig (plus strand signal of all reads) 72.5 MB
ENCFF204IUL.bigWig bigWig (plus strand signal of unique reads) 63.8 MB
ENCFF229SFH.bam bam (alignments) 3.9 GB
ENCFF236YMC.tsv tsv (gene quantifications) 10.4 MB
ENCFF254TAO.bigWig bigWig (plus strand signal of all reads) 76.2 MB
ENCFF264WGS.bigWig bigWig (minus strand signal of all reads) 61.6 MB
ENCFF286WFP.bam bam (alignments) 3.8 GB
ENCFF308UBH.bigWig bigWig (minus strand signal of unique reads) 54.1 MB
ENCFF309JXL.bam bam (transcriptome alignments) 5.8 GB
ENCFF314YEX.bigWig bigWig (plus strand signal of all reads) 63.6 MB
ENCFF318FEP.bam bam (transcriptome alignments) 5.3 GB
ENCFF328BCN.bigWig bigWig (plus strand signal of unique reads) 64.0 MB
ENCFF360RUT.bigWig bigWig (minus strand signal of all reads) 75.3 MB
ENCFF361KUQ.bam bam (alignments) 4.7 GB
ENCFF384ODB.bam bam (transcriptome alignments) 6.0 GB
ENCFF412FZS.bigWig bigWig (plus strand signal of unique reads) 61.8 MB
ENCFF412QSZ.bigWig bigWig (minus strand signal of all reads) 62.5 MB
ENCFF421TMB.bigWig bigWig (minus strand signal of unique reads) 62.4 MB
ENCFF446DPL.bam bam (alignments) 3.9 GB
ENCFF450SHB.bigWig bigWig (plus strand signal of unique reads) 58.4 MB
ENCFF491GJV.bigWig bigWig (minus strand signal of all reads) 64.8 MB
ENCFF518DHI.bigWig bigWig (minus strand signal of unique reads) 60.1 MB
ENCFF523LXJ.bam bam (alignments) 3.9 GB
ENCFF524YRU.tsv tsv (transcript quantifications) 29.9 MB
ENCFF525ALF.bam bam (alignments) 4.8 GB
ENCFF529TIM.bam bam (alignments) 4.8 GB
ENCFF530DYS.tsv tsv (transcript quantifications) 25.0 MB
ENCFF584EWV.bigWig bigWig (plus strand signal of unique reads) 55.7 MB
ENCFF605DLV.bigWig bigWig (plus strand signal of all reads) 72.2 MB
ENCFF605LHS.bigWig bigWig (minus strand signal of all reads) 71.6 MB
ENCFF610EVB.bigWig bigWig (minus strand signal of unique reads) 63.0 MB
ENCFF616IWP.bigWig bigWig (minus strand signal of unique reads) 62.4 MB
ENCFF618LAI.bigWig bigWig (minus strand signal of all reads) 71.7 MB
ENCFF627DHL.bigWig bigWig (minus strand signal of unique reads) 56.7 MB
ENCFF629KIA.bigWig bigWig (plus strand signal of all reads) 65.5 MB
ENCFF656RXL.fastq fastq (reads) 2.6 GB
ENCFF659DHS.bigWig bigWig (plus strand signal of all reads) 72.6 MB
ENCFF690TDN.bigWig bigWig (minus strand signal of all reads) 60.0 MB
ENCFF691MJX.fastq fastq (reads) 2.6 GB
ENCFF692ZIB.bigWig bigWig (plus strand signal of unique reads) 67.4 MB
ENCFF713ONU.bam bam (transcriptome alignments) 5.3 GB
ENCFF724JFX.bigWig bigWig (minus strand signal of unique reads) 57.2 MB
ENCFF726AVK.tsv tsv (gene quantifications) 9.1 MB
ENCFF726EST.bigWig bigWig (plus strand signal of unique reads) 58.2 MB
ENCFF739AIP.tsv tsv (gene quantifications) 9.5 MB
ENCFF742HXX.bigWig bigWig (minus strand signal of unique reads) 65.9 MB
ENCFF756YCT.bigWig bigWig (minus strand signal of all reads) 61.9 MB
ENCFF768OZJ.bigWig bigWig (plus strand signal of unique reads) 67.4 MB
ENCFF772EGW.bigWig bigWig (plus strand signal of all reads) 61.2 MB
ENCFF791HTS.fastq fastq (reads) 2.7 GB
ENCFF812VKX.tsv tsv (gene quantifications) 10.4 MB
ENCFF824FEG.bam bam (transcriptome alignments) 5.1 GB
ENCFF828RUV.bigWig bigWig (minus strand signal of all reads) 66.0 MB
ENCFF847DQL.bam bam (alignments) 3.9 GB
ENCFF854SYZ.bam bam (transcriptome alignments) 5.1 GB
ENCFF881OLP.tsv tsv (transcript quantifications) 25.4 MB
ENCFF885FKO.bigWig bigWig (plus strand signal of unique reads) 64.4 MB
ENCFF898XOW.bigWig bigWig (minus strand signal of unique reads) 57.2 MB
ENCFF907AVE.bam bam (alignments) 4.7 GB
ENCFF920ENL.bigWig bigWig (minus strand signal of all reads) 71.3 MB
ENCFF930VUF.bigWig bigWig (minus strand signal of unique reads) 66.1 MB
ENCFF945TIU.tsv tsv (gene quantifications) 9.1 MB
ENCFF979ESH.tsv tsv (transcript quantifications) 27.3 MB
ENCFF992RPY.bigWig bigWig (minus strand signal of unique reads) 65.7 MB
ENCSR151MPZ ENCSR · via encode_api

eCLIP control experiment on HepG2 against DHX30

Homo sapiens

8 data files
FileTypeSize
ENCFF009FAU.bigWig bigWig (minus strand signal of unique reads) 38.4 MB
ENCFF238WUM.bigWig bigWig (plus strand signal of unique reads) 38.8 MB
ENCFF298MZM.bigWig bigWig (plus strand signal of unique reads) 38.4 MB
ENCFF336UXX.bam bam (alignments) 856.3 MB
ENCFF342RNA.fastq fastq (reads) 708.4 MB
ENCFF360QCS.bigWig bigWig (minus strand signal of unique reads) 37.9 MB
ENCFF552GHW.bam bam (alignments) 846.4 MB
ENCFF618ASS.fastq fastq (reads) 802.5 MB
ENCSR965YGY ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) input control experiment of FUBP1

1 data file
FileTypeSize
ENCFF586EOO.fastq fastq (reads) 616.6 MB
ENCSR147ZBD ENCSR · via encode_api

shRNA knockdown against DDX6 in HepG2 cells followed by RNA-seq. (DDX6-BGHLV12)

Homo sapiens

92 data files
FileTypeSize
ENCFF008AWY.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF019OMW.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 75.7 MB
ENCFF037YBM.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.5 MB
ENCFF041PVO.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 81.8 MB
ENCFF066XSC.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 69.5 MB
ENCFF082EAB.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 8.9 GB
ENCFF085LXQ.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 74.6 MB
ENCFF094RFX.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 73.0 MB
ENCFF104ZCF.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF120GTP.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF121CEF.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 8.0 GB
ENCFF128DXO.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 75.3 MB
ENCFF139XIT.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 78.1 MB
ENCFF147CKI.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 72.8 MB
ENCFF151NTA.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.7 MB
ENCFF166QBX.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 81.8 MB
ENCFF176NQP.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 3.3 MB
ENCFF186FQN.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 70.2 MB
ENCFF200TBC.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 10.0 GB
ENCFF203QKE.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 73.3 MB
ENCFF208QZF.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.3 MB
ENCFF216IFC.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 73.1 MB
ENCFF220YEM.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF226GMB.bam bam (alignments); assembly: GRCh38; genome annotation: V24 6.9 GB
ENCFF230PIZ.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 80.2 MB
ENCFF247IQI.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 74.3 MB
ENCFF253HRN.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 72.4 MB
ENCFF258BON.bam bam (alignments); assembly: GRCh38; genome annotation: V29 6.9 GB
ENCFF261PBC.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 71.2 MB
ENCFF288ITA.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.0 MB
ENCFF296KAJ.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 80.4 MB
ENCFF320ZRE.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 71.5 MB
ENCFF328GLT.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 74.8 MB
ENCFF343WSX.bam bam (alignments); assembly: hg19; genome annotation: V19 5.0 GB
ENCFF352EGL.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 76.1 MB
ENCFF353TCN.fastq fastq (reads) 3.6 GB
ENCFF354QLG.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 3.0 MB
ENCFF365JNK.bam bam (alignments); assembly: hg19; genome annotation: V19 5.9 GB
ENCFF368UHA.bam bam (alignments); assembly: GRCh38; genome annotation: V24 5.7 GB
ENCFF388PFU.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 77.1 MB
ENCFF397CIQ.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.4 MB
ENCFF401NSP.bam bam (alignments); assembly: hg19; genome annotation: V19 5.4 GB
ENCFF438BTX.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 80.5 MB
ENCFF447TZY.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.5 MB
ENCFF476XIK.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 4.0 MB
ENCFF477NKX.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 76.1 MB
ENCFF489UAC.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 74.2 MB
ENCFF533HCH.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF545WQN.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 83.4 MB
ENCFF558LQM.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF582RSQ.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 84.9 MB
ENCFF591CKM.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 84.0 MB
ENCFF599QIG.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 73.1 MB
ENCFF617DGF.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 78.1 MB
ENCFF629RCD.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 71.6 MB
ENCFF637YXM.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 76.0 MB
ENCFF639SIY.fastq fastq (reads) 3.4 GB
ENCFF646CIH.bam bam (alignments); assembly: hg19; genome annotation: V19 5.0 GB
ENCFF649NBU.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF649VHQ.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 85.6 MB
ENCFF655VZR.bam bam (alignments); assembly: hg19; genome annotation: V19 5.3 GB
ENCFF662YIX.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 71.3 MB
ENCFF663NFQ.bam bam (alignments); assembly: GRCh38; genome annotation: V24 5.9 GB
ENCFF666CEY.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 81.4 MB
ENCFF669KAR.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 9.0 GB
ENCFF697HUP.fastq fastq (reads) 3.3 GB
ENCFF725RWM.bam bam (alignments); assembly: hg19; genome annotation: V19 6.3 GB
ENCFF727ZQB.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF743XZQ.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 8.9 GB
ENCFF751ALB.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 16.6 MB
ENCFF751YMD.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 77.1 MB
ENCFF752WJO.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 5.5 MB
ENCFF769QHL.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 68.7 MB
ENCFF778QHP.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 69.4 MB
ENCFF779HXE.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 8.0 GB
ENCFF781RXU.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 73.1 MB
ENCFF819OAN.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 74.7 MB
ENCFF850KXY.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 4.4 MB
ENCFF865SBX.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 78.6 MB
ENCFF870ZRZ.bam bam (alignments); assembly: GRCh38; genome annotation: V24 7.3 GB
ENCFF872RKD.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 74.9 MB
ENCFF877XXF.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 77.0 MB
ENCFF892VYQ.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 75.6 MB
ENCFF897ZIG.fastq fastq (reads) 3.6 GB
ENCFF929GAD.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 73.4 MB
ENCFF937TOO.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF945RWA.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 67.6 MB
ENCFF970BMN.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 85.7 MB
ENCFF970VDT.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 77.9 MB
ENCFF992NSK.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF993BJV.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 84.0 MB
ENCFF997EMY.bam bam (alignments); assembly: GRCh38; genome annotation: V29 7.3 GB
ENCSR576GOW ENCSR · via encode_api

shRNA knockdown against RAVER1 in HepG2 cells followed by RNA-seq. (RAVER1 BGHLV14)

Homo sapiens

92 data files
FileTypeSize
ENCFF021BLM.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 94.4 MB
ENCFF038PGB.bam bam (alignments); assembly: GRCh38; genome annotation: V29 4.1 GB
ENCFF041KKF.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF042JAN.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.0 GB
ENCFF054ZCU.bam bam (alignments); assembly: hg19; genome annotation: V19 4.0 GB
ENCFF062IXS.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF064SCK.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 5.4 GB
ENCFF067GWP.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 4.2 MB
ENCFF073PXE.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 86.3 MB
ENCFF082WVT.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 5.4 GB
ENCFF088DBU.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 78.2 MB
ENCFF089OVW.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF111UWQ.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 74.3 MB
ENCFF116CGT.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 3.0 MB
ENCFF143QVA.fastq fastq (reads) 2.6 GB
ENCFF154GDF.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 74.3 MB
ENCFF162XLX.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF172YNN.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 6.1 GB
ENCFF173IPR.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 88.1 MB
ENCFF178RIP.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 4.4 MB
ENCFF184IFJ.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 79.6 MB
ENCFF201UHZ.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.7 GB
ENCFF222DCS.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.4 GB
ENCFF226GRM.bam bam (alignments); assembly: hg19; genome annotation: V19 4.0 GB
ENCFF227TPU.bam bam (alignments); assembly: hg19; genome annotation: V19 4.6 GB
ENCFF229JDB.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 93.6 MB
ENCFF231AZS.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 81.3 MB
ENCFF237ENN.bam bam (alignments); assembly: GRCh38; genome annotation: V29 4.7 GB
ENCFF260EEK.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 79.9 MB
ENCFF272UMB.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 85.7 MB
ENCFF277IXA.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 87.1 MB
ENCFF285NOH.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 93.9 MB
ENCFF290TPI.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 82.9 MB
ENCFF306SSV.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 94.9 MB
ENCFF313XFX.fastq fastq (reads) 2.1 GB
ENCFF314AKN.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 79.8 MB
ENCFF322GLV.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 80.6 MB
ENCFF326WYK.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.3 MB
ENCFF328AWZ.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 72.9 MB
ENCFF348YWN.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 73.5 MB
ENCFF363ELC.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF368IVK.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF370FUF.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 5.2 GB
ENCFF371KMT.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 87.3 MB
ENCFF372VDT.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 94.7 MB
ENCFF381PXK.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 87.3 MB
ENCFF387PQT.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 3.4 MB
ENCFF393LQA.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 4.6 GB
ENCFF404BEI.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF435JFU.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 88.1 MB
ENCFF469SKG.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 78.1 MB
ENCFF488AVD.bam bam (alignments); assembly: hg19; genome annotation: V19 3.4 GB
ENCFF541IRZ.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 78.3 MB
ENCFF604PME.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 87.3 MB
ENCFF605MDF.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.1 GB
ENCFF648HEK.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 4.6 GB
ENCFF648TRM.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 78.2 MB
ENCFF670WFA.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF674TLK.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 85.7 MB
ENCFF680OYW.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 5.6 MB
ENCFF690KDQ.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF690QAK.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF694NVZ.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 79.7 MB
ENCFF720MUD.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF730XYT.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 69.3 MB
ENCFF743KAS.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 77.4 MB
ENCFF750BSK.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.0 MB
ENCFF751ACH.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.4 MB
ENCFF756SFZ.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 86.6 MB
ENCFF779CQN.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 94.0 MB
ENCFF780ANL.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF783PVX.bam bam (alignments); assembly: hg19; genome annotation: V19 3.9 GB
ENCFF793HNW.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 68.0 MB
ENCFF794KGE.fastq fastq (reads) 2.5 GB
ENCFF794PTV.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 75.4 MB
ENCFF827JQU.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 85.7 MB
ENCFF830RKV.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 88.7 MB
ENCFF840OUY.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 82.0 MB
ENCFF845HPT.fastq fastq (reads) 2.2 GB
ENCFF884PYA.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 81.0 MB
ENCFF907MPC.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 87.1 MB
ENCFF912HWZ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 76.8 MB
ENCFF927GKW.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 73.4 MB
ENCFF938HKD.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 74.9 MB
ENCFF945JIV.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 87.1 MB
ENCFF949CSP.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 87.6 MB
ENCFF954XHK.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 85.8 MB
ENCFF962PNZ.bam bam (alignments); assembly: hg19; genome annotation: V19 3.4 GB
ENCFF964ULK.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 82.9 MB
ENCFF970EZF.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 14.8 MB
ENCFF974IXZ.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.8 MB
ENCFF991SWF.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 81.9 MB
ENCSR047AJA ENCSR · via encode_api

shRNA knockdown against SUB1 in K562 cells followed by RNA-seq. (SUB1 BGKLV13)

Homo sapiens

92 data files
FileTypeSize
ENCFF011RMA.fastq fastq (reads) 2.5 GB
ENCFF016PCX.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 4.2 MB
ENCFF017MPS.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 73.5 MB
ENCFF027HSD.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 80.7 MB
ENCFF044OXQ.fastq fastq (reads) 2.2 GB
ENCFF057SNT.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 79.2 MB
ENCFF060PUE.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.9 MB
ENCFF086GXD.bam bam (alignments); assembly: GRCh38; genome annotation: V29 4.1 GB
ENCFF086PPM.bam bam (alignments); assembly: hg19; genome annotation: V19 4.5 GB
ENCFF093JVG.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 90.3 MB
ENCFF094PMU.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 73.2 MB
ENCFF115ZDH.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 5.3 GB
ENCFF176HSR.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF198IKY.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 74.4 MB
ENCFF230JUN.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 80.1 MB
ENCFF252MOZ.bam bam (alignments); assembly: hg19; genome annotation: V19 3.9 GB
ENCFF261DMI.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 6.0 GB
ENCFF266CYH.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 65.5 MB
ENCFF269WDH.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 75.3 MB
ENCFF291ZWP.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 70.5 MB
ENCFF297CCY.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 4.1 MB
ENCFF312GRW.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.1 GB
ENCFF338DME.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 88.5 MB
ENCFF344UEM.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 82.0 MB
ENCFF363CSY.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 89.1 MB
ENCFF371TXJ.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF382FUW.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 73.7 MB
ENCFF384CJE.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 4.8 GB
ENCFF388PBW.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF389EAB.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 70.5 MB
ENCFF394DBK.fastq fastq (reads) 2.1 GB
ENCFF399YLD.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF405VZK.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 71.7 MB
ENCFF412RVU.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 87.3 MB
ENCFF422KVW.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 72.7 MB
ENCFF426OIY.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 71.6 MB
ENCFF430UBS.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 90.3 MB
ENCFF452BPL.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 72.5 MB
ENCFF453VBH.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF467AIX.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 78.2 MB
ENCFF468AXK.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF470RHD.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF488FNT.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 79.9 MB
ENCFF491UCM.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 81.1 MB
ENCFF494MZC.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 15.4 MB
ENCFF496CGE.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 89.1 MB
ENCFF516QFO.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 80.7 MB
ENCFF525VYI.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 80.2 MB
ENCFF527DBK.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 76.7 MB
ENCFF540WCD.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 81.7 MB
ENCFF547DJJ.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 5.4 GB
ENCFF566BIA.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF571WXG.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 78.0 MB
ENCFF576ZRP.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 79.2 MB
ENCFF585GUI.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 75.7 MB
ENCFF589YAN.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 78.2 MB
ENCFF605BBC.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.0 GB
ENCFF638YHS.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 80.6 MB
ENCFF642BIL.bam bam (alignments); assembly: hg19; genome annotation: V19 3.4 GB
ENCFF644GQQ.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF645AXP.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 4.8 GB
ENCFF659PNJ.bam bam (alignments); assembly: GRCh38; genome annotation: V29 4.8 GB
ENCFF681FRS.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF720DIJ.fastq fastq (reads) 2.4 GB
ENCFF731MKZ.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 81.1 MB
ENCFF739ZNF.bam bam (alignments); assembly: hg19; genome annotation: V19 4.0 GB
ENCFF743FCZ.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.7 MB
ENCFF761BNH.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.3 MB
ENCFF768HHV.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 72.1 MB
ENCFF771VSC.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 72.0 MB
ENCFF772ZAJ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 69.7 MB
ENCFF793KBU.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.4 MB
ENCFF805ECJ.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 82.0 MB
ENCFF812LKZ.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF820PIP.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 67.6 MB
ENCFF823LBK.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 3.5 MB
ENCFF848QSX.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 73.7 MB
ENCFF871RFJ.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 68.0 MB
ENCFF879IDX.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 78.5 MB
ENCFF902DTS.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 67.1 MB
ENCFF911FNB.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 68.9 MB
ENCFF914COM.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF929PLY.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 76.0 MB
ENCFF930IPY.bam bam (alignments); assembly: hg19; genome annotation: V19 3.9 GB
ENCFF931XXQ.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.9 MB
ENCFF933WKB.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 74.1 MB
ENCFF936LYX.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 5.5 MB
ENCFF944PUB.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.5 GB
ENCFF945KZL.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 73.7 MB
ENCFF979CLD.bam bam (alignments); assembly: hg19; genome annotation: V19 3.4 GB
ENCFF988JSD.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 5.3 GB
ENCFF996YRH.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.8 GB
ENCSR776SXA ENCSR · via encode_api

Control shRNA against no target in HepG2 cells followed by RNA-seq. (NT_BGHLV30B)

Homo sapiens

84 data files
FileTypeSize
ENCFF018JYT.bigWig bigWig (plus strand signal of unique reads) 81.8 MB
ENCFF031BKM.bigWig bigWig (plus strand signal of unique reads) 81.9 MB
ENCFF036JUD.tsv tsv (gene quantifications) 9.5 MB
ENCFF045COW.bam bam (alignments) 6.7 GB
ENCFF056YEW.bigWig bigWig (plus strand signal of all reads) 90.1 MB
ENCFF091PMY.bigWig bigWig (minus strand signal of unique reads) 79.7 MB
ENCFF103PVI.bam bam (alignments) 5.6 GB
ENCFF122RIW.bigWig bigWig (plus strand signal of unique reads) 78.8 MB
ENCFF144XIL.bigWig bigWig (minus strand signal of unique reads) 65.4 MB
ENCFF146GWF.bigWig bigWig (minus strand signal of unique reads) 77.0 MB
ENCFF154RLC.bam bam (alignments) 5.8 GB
ENCFF161NTR.bam bam (alignments) 5.7 GB
ENCFF191UYM.bigWig bigWig (plus strand signal of unique reads) 71.9 MB
ENCFF192MTI.bigWig bigWig (minus strand signal of unique reads) 68.5 MB
ENCFF193CCD.tsv tsv (gene quantifications) 10.4 MB
ENCFF285JZD.bigWig bigWig (minus strand signal of all reads) 85.9 MB
ENCFF286SRH.bigWig bigWig (minus strand signal of all reads) 71.8 MB
ENCFF309NMI.bam bam (alignments) 5.7 GB
ENCFF314UUE.bigWig bigWig (minus strand signal of all reads) 89.5 MB
ENCFF325DLF.fastq fastq (reads) 3.7 GB
ENCFF327GOZ.tsv tsv (transcript quantifications) 25.4 MB
ENCFF329CXE.bigWig bigWig (minus strand signal of all reads) 74.2 MB
ENCFF343GHI.bigWig bigWig (plus strand signal of unique reads) 78.9 MB
ENCFF372IZL.tsv tsv (transcript quantifications) 25.0 MB
ENCFF410IHT.bigWig bigWig (minus strand signal of unique reads) 79.7 MB
ENCFF418GZS.bigWig bigWig (plus strand signal of all reads) 73.2 MB
ENCFF426PYM.bigWig bigWig (plus strand signal of all reads) 87.3 MB
ENCFF427USC.bam bam (alignments) 6.9 GB
ENCFF494MOS.bigWig bigWig (plus strand signal of unique reads) 67.3 MB
ENCFF496ABP.bam bam (alignments) 6.9 GB
ENCFF499QVJ.tsv tsv (gene quantifications) 9.5 MB
ENCFF519YTY.bam bam (alignments) 5.7 GB
ENCFF539FKS.tsv tsv (gene quantifications) 9.1 MB
ENCFF542SFN.bigWig bigWig (minus strand signal of all reads) 85.9 MB
ENCFF567LXN.bam bam (alignments) 6.9 GB
ENCFF570IDC.tsv tsv (transcript quantifications) 27.4 MB
ENCFF576HLA.tsv tsv (transcript quantifications) 29.9 MB
ENCFF584DJW.bigWig bigWig (plus strand signal of unique reads) 69.2 MB
ENCFF587FXT.bam bam (transcriptome alignments) 8.5 GB
ENCFF591CRB.bigWig bigWig (minus strand signal of all reads) 85.9 MB
ENCFF610FEB.bigWig bigWig (plus strand signal of all reads) 91.1 MB
ENCFF616AQI.fastq fastq (reads) 3.7 GB
ENCFF619FWF.bam bam (transcriptome alignments) 7.6 GB
ENCFF626TYG.bigWig bigWig (minus strand signal of all reads) 89.5 MB
ENCFF628XPM.tsv tsv (gene quantifications) 10.4 MB
ENCFF635ZWS.bigWig bigWig (minus strand signal of unique reads) 79.8 MB
ENCFF642IVI.tsv tsv (transcript quantifications) 25.4 MB
ENCFF658RMF.bigWig bigWig (plus strand signal of unique reads) 79.0 MB
ENCFF659FMM.bigWig bigWig (minus strand signal of all reads) 76.8 MB
ENCFF661HFX.bigWig bigWig (plus strand signal of all reads) 75.9 MB
ENCFF661JHU.bigWig bigWig (plus strand signal of all reads) 87.3 MB
ENCFF668JLY.bam bam (alignments) 6.7 GB
ENCFF669RUN.bam bam (transcriptome alignments) 7.6 GB
ENCFF679YSE.bigWig bigWig (minus strand signal of all reads) 71.2 MB
ENCFF686LVI.tsv tsv (transcript quantifications) 27.4 MB
ENCFF692FTE.bigWig bigWig (plus strand signal of all reads) 78.4 MB
ENCFF694TAK.bigWig bigWig (minus strand signal of unique reads) 76.9 MB
ENCFF734XBA.tsv tsv (transcript quantifications) 29.9 MB
ENCFF743VLN.bigWig bigWig (plus strand signal of unique reads) 72.1 MB
ENCFF763QZM.bigWig bigWig (plus strand signal of all reads) 75.2 MB
ENCFF780RMP.bigWig bigWig (minus strand signal of unique reads) 76.9 MB
ENCFF785HOX.bigWig bigWig (minus strand signal of unique reads) 67.6 MB
ENCFF828VLN.bigWig bigWig (plus strand signal of all reads) 76.2 MB
ENCFF838TBG.fastq fastq (reads) 3.7 GB
ENCFF850MYD.bigWig bigWig (plus strand signal of unique reads) 69.6 MB
ENCFF857SXZ.bigWig bigWig (minus strand signal of all reads) 88.7 MB
ENCFF878LAF.bigWig bigWig (minus strand signal of unique reads) 70.2 MB
ENCFF882EXU.bigWig bigWig (plus strand signal of all reads) 87.1 MB
ENCFF882KOM.bam bam (alignments) 5.6 GB
ENCFF892ZQN.bigWig bigWig (minus strand signal of unique reads) 67.4 MB
ENCFF895ANQ.bigWig bigWig (minus strand signal of unique reads) 69.9 MB
ENCFF905UPZ.bigWig bigWig (minus strand signal of all reads) 74.8 MB
ENCFF907YUO.tsv tsv (transcript quantifications) 25.0 MB
ENCFF914FKR.fastq fastq (reads) 3.6 GB
ENCFF933ACH.bam bam (transcriptome alignments) 7.5 GB
ENCFF940GCU.bigWig bigWig (plus strand signal of all reads) 91.1 MB
ENCFF941KMX.bigWig bigWig (plus strand signal of unique reads) 70.7 MB
ENCFF957HVP.bigWig bigWig (plus strand signal of all reads) 72.7 MB
ENCFF963QLN.bigWig bigWig (plus strand signal of unique reads) 81.9 MB
ENCFF974NXC.bam bam (transcriptome alignments) 8.5 GB
ENCFF978BRO.bam bam (transcriptome alignments) 7.6 GB
ENCFF985VTH.bam bam (alignments) 6.9 GB
ENCFF992TTT.tsv tsv (gene quantifications) 9.1 MB
ENCFF999XZE.bigWig bigWig (minus strand signal of all reads) 73.6 MB
ENCSR234YMW ENCSR · via encode_api

shRNA knockdown against SLTM in K562 cells followed by RNA-seq. (SLTM BGKLV13)

Homo sapiens

92 data files
FileTypeSize
ENCFF005ITX.tsv tsv (differential expression quantifications) 4.1 MB
ENCFF007NMP.tar tar (differential splicing quantifications) 3.5 MB
ENCFF008JUG.tsv tsv (gene quantifications) 10.4 MB
ENCFF015QPU.bigWig bigWig (minus strand signal of unique reads) 74.3 MB
ENCFF020XNJ.bam bam (alignments) 3.4 GB
ENCFF027TEL.bam bam (transcriptome alignments) 5.2 GB
ENCFF081TNK.bigWig bigWig (plus strand signal of unique reads) 72.6 MB
ENCFF084WWO.bigWig bigWig (minus strand signal of all reads) 83.1 MB
ENCFF086OTT.bigWig bigWig (minus strand signal of all reads) 84.8 MB
ENCFF107AGW.bam bam (alignments) 4.0 GB
ENCFF111AGW.bam bam (alignments) 4.0 GB
ENCFF123KWI.bigWig bigWig (minus strand signal of unique reads) 79.8 MB
ENCFF132JAV.tsv tsv (differential expression quantifications) 1.8 MB
ENCFF160MPZ.bigWig bigWig (plus strand signal of unique reads) 71.3 MB
ENCFF173CKN.tsv tsv (transcript quantifications) 29.8 MB
ENCFF185YBJ.bigWig bigWig (minus strand signal of unique reads) 65.7 MB
ENCFF226UUN.bigWig bigWig (plus strand signal of all reads) 73.5 MB
ENCFF231TYC.bam bam (alignments) 4.7 GB
ENCFF232FKT.tsv tsv (differential expression quantifications) 2.8 MB
ENCFF239HWD.bam bam (transcriptome alignments) 5.9 GB
ENCFF257RVP.tsv tsv (transcript quantifications) 25.3 MB
ENCFF258QNY.fastq fastq (reads) 2.5 GB
ENCFF259YUV.bigWig bigWig (plus strand signal of all reads) 84.1 MB
ENCFF263ZMI.tsv tsv (gene quantifications) 9.1 MB
ENCFF265OTR.bigWig bigWig (minus strand signal of unique reads) 79.6 MB
ENCFF281TKG.bam bam (alignments) 4.0 GB
ENCFF287EVN.bigWig bigWig (plus strand signal of unique reads) 72.7 MB
ENCFF316EUQ.bigWig bigWig (plus strand signal of unique reads) 76.1 MB
ENCFF317XJV.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF329KOZ.bigWig bigWig (plus strand signal of all reads) 89.7 MB
ENCFF346EWI.bigWig bigWig (plus strand signal of all reads) 77.1 MB
ENCFF348OSZ.bigWig bigWig (minus strand signal of all reads) 81.8 MB
ENCFF349ADL.bigWig bigWig (plus strand signal of unique reads) 76.6 MB
ENCFF378BLN.bam bam (alignments) 3.9 GB
ENCFF379ACL.bigWig bigWig (minus strand signal of all reads) 88.5 MB
ENCFF392OBH.tsv tsv (transcript quantifications) 24.9 MB
ENCFF471MTM.bam bam (transcriptome alignments) 5.3 GB
ENCFF477KWP.bigWig bigWig (minus strand signal of unique reads) 74.9 MB
ENCFF481JKI.tar tar (differential splicing quantifications) 3.2 MB
ENCFF486GSJ.bam bam (transcriptome alignments) 4.3 GB
ENCFF491IKN.bigWig bigWig (plus strand signal of unique reads) 81.6 MB
ENCFF492BHF.tar tar (differential splicing quantifications) 13.6 MB
ENCFF515SJQ.bam bam (transcriptome alignments) 4.4 GB
ENCFF528YUX.tsv tsv (transcript quantifications) 27.3 MB
ENCFF531ZXK.bigWig bigWig (plus strand signal of unique reads) 81.7 MB
ENCFF534ZWR.bigWig bigWig (plus strand signal of unique reads) 81.7 MB
ENCFF551BGC.bam bam (alignments) 3.9 GB
ENCFF553OYW.bigWig bigWig (plus strand signal of unique reads) 67.3 MB
ENCFF564HYX.bigWig bigWig (minus strand signal of unique reads) 70.9 MB
ENCFF569EOM.bam bam (alignments) 3.4 GB
ENCFF580OTX.bigWig bigWig (plus strand signal of all reads) 81.7 MB
ENCFF587FDO.bam bam (alignments) 3.9 GB
ENCFF587YNO.bigWig bigWig (minus strand signal of all reads) 89.8 MB
ENCFF592GAP.tsv tsv (gene quantifications) 9.4 MB
ENCFF604BEG.bigWig bigWig (minus strand signal of unique reads) 74.8 MB
ENCFF611JWL.bigWig bigWig (plus strand signal of all reads) 77.8 MB
ENCFF612CFU.bam bam (transcriptome alignments) 4.9 GB
ENCFF635VHK.bigWig bigWig (plus strand signal of unique reads) 76.6 MB
ENCFF641GDM.fastq fastq (reads) 2.1 GB
ENCFF663ACZ.bigWig bigWig (plus strand signal of unique reads) 76.7 MB
ENCFF665WAE.bigWig bigWig (minus strand signal of unique reads) 70.6 MB
ENCFF672VAJ.bam bam (alignments) 3.4 GB
ENCFF702ZPZ.bigWig bigWig (minus strand signal of unique reads) 69.8 MB
ENCFF704SQW.bigWig bigWig (minus strand signal of all reads) 80.7 MB
ENCFF712SAV.bigWig bigWig (plus strand signal of unique reads) 76.0 MB
ENCFF714CUO.bigWig bigWig (minus strand signal of unique reads) 79.8 MB
ENCFF715ZHC.bigWig bigWig (minus strand signal of all reads) 76.4 MB
ENCFF721GFA.tsv tsv (transcript quantifications) 27.3 MB
ENCFF738RJJ.bam bam (alignments) 4.6 GB
ENCFF742HEX.bigWig bigWig (minus strand signal of all reads) 84.8 MB
ENCFF781JLE.tsv tsv (gene quantifications) 10.4 MB
ENCFF790ZIR.tsv tsv (transcript quantifications) 25.3 MB
ENCFF802FFM.bigWig bigWig (plus strand signal of all reads) 90.8 MB
ENCFF814KGS.bigWig bigWig (plus strand signal of all reads) 83.3 MB
ENCFF825VYK.tsv tsv (gene quantifications) 9.4 MB
ENCFF826DRO.bigWig bigWig (minus strand signal of all reads) 76.3 MB
ENCFF841DPY.bigWig bigWig (minus strand signal of all reads) 89.7 MB
ENCFF870COS.bam bam (alignments) 4.7 GB
ENCFF891RDV.bigWig bigWig (minus strand signal of all reads) 72.3 MB
ENCFF895JTS.bigWig bigWig (plus strand signal of all reads) 85.7 MB
ENCFF904WHI.tsv tsv (transcript quantifications) 29.8 MB
ENCFF905SLK.fastq fastq (reads) 2.1 GB
ENCFF908EML.fastq fastq (reads) 2.4 GB
ENCFF910DUL.bigWig bigWig (minus strand signal of unique reads) 74.3 MB
ENCFF914DZV.bigWig bigWig (plus strand signal of all reads) 78.1 MB
ENCFF929YNZ.bigWig bigWig (minus strand signal of unique reads) 75.0 MB
ENCFF932YFN.tsv tsv (gene quantifications) 9.1 MB
ENCFF936BKM.tsv tsv (differential expression quantifications) 5.5 MB
ENCFF947IBN.bigWig bigWig (plus strand signal of all reads) 85.7 MB
ENCFF952WJE.tsv tsv (transcript quantifications) 24.9 MB
ENCFF980PPP.bigWig bigWig (minus strand signal of all reads) 76.8 MB
ENCFF994PAU.bigWig bigWig (plus strand signal of all reads) 90.9 MB
ENCSR230ORC ENCSR · via encode_api

shRNA knockdown against CIRBP in HepG2 cells followed by RNA-seq. (CIRBP-BGHLV12)

Homo sapiens

92 data files
FileTypeSize
ENCFF005KRH.bam bam (alignments) 5.6 GB
ENCFF030ZRS.tsv tsv (transcript quantifications) 27.3 MB
ENCFF086JZP.bigWig bigWig (minus strand signal of all reads) 66.7 MB
ENCFF092UNP.bam bam (transcriptome alignments) 7.5 GB
ENCFF098AAX.tsv tsv (transcript quantifications) 25.4 MB
ENCFF100KXF.bigWig bigWig (plus strand signal of all reads) 73.0 MB
ENCFF109ESX.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF126ZVU.bigWig bigWig (minus strand signal of all reads) 71.8 MB
ENCFF132OXG.bam bam (alignments) 4.2 GB
ENCFF137DOB.tar tar (differential splicing quantifications) 3.8 MB
ENCFF139IFY.bam bam (alignments) 5.1 GB
ENCFF148QZA.bigWig bigWig (plus strand signal of unique reads) 63.3 MB
ENCFF153OMG.tsv tsv (differential expression quantifications) 3.0 MB
ENCFF158IXH.bigWig bigWig (plus strand signal of all reads) 65.5 MB
ENCFF183PIZ.tsv tsv (gene quantifications) 9.5 MB
ENCFF190GHZ.bigWig bigWig (plus strand signal of all reads) 67.8 MB
ENCFF191QXF.bigWig bigWig (plus strand signal of all reads) 74.0 MB
ENCFF200FCG.bigWig bigWig (minus strand signal of unique reads) 65.1 MB
ENCFF214IWO.bam bam (alignments) 5.1 GB
ENCFF236YFK.bigWig bigWig (minus strand signal of unique reads) 67.0 MB
ENCFF255VML.bam bam (transcriptome alignments) 6.9 GB
ENCFF258HRE.bigWig bigWig (minus strand signal of all reads) 72.8 MB
ENCFF270FIC.bam bam (alignments) 4.9 GB
ENCFF273GSB.bigWig bigWig (minus strand signal of all reads) 66.1 MB
ENCFF278SOZ.bam bam (alignments) 4.1 GB
ENCFF288YVH.bigWig bigWig (minus strand signal of all reads) 71.4 MB
ENCFF299XEY.bam bam (alignments) 4.1 GB
ENCFF303SBB.tsv tsv (gene quantifications) 10.4 MB
ENCFF319JLG.bigWig bigWig (minus strand signal of unique reads) 66.9 MB
ENCFF333NUF.tsv tsv (differential expression quantifications) 4.3 MB
ENCFF334SAJ.bam bam (alignments) 4.4 GB
ENCFF343YQF.tsv tsv (transcript quantifications) 27.3 MB
ENCFF349LXO.bigWig bigWig (minus strand signal of unique reads) 60.8 MB
ENCFF355ONX.bigWig bigWig (minus strand signal of unique reads) 62.8 MB
ENCFF386CWA.bigWig bigWig (plus strand signal of all reads) 73.9 MB
ENCFF405HIK.tsv tsv (gene quantifications) 9.4 MB
ENCFF417OUX.bigWig bigWig (plus strand signal of unique reads) 63.6 MB
ENCFF420HHR.bam bam (transcriptome alignments) 7.6 GB
ENCFF426MBO.tar tar (differential splicing quantifications) 16.3 MB
ENCFF429HWS.tsv tsv (transcript quantifications) 25.3 MB
ENCFF455FJB.bigWig bigWig (plus strand signal of all reads) 68.2 MB
ENCFF461EVX.bigWig bigWig (plus strand signal of unique reads) 66.8 MB
ENCFF474WTL.fastq fastq (reads) 3.0 GB
ENCFF480WWK.tsv tsv (differential expression quantifications) 1.8 MB
ENCFF484RSP.bigWig bigWig (plus strand signal of unique reads) 68.5 MB
ENCFF486WWH.bigWig bigWig (plus strand signal of all reads) 74.0 MB
ENCFF491IEZ.bigWig bigWig (plus strand signal of unique reads) 68.4 MB
ENCFF496PYM.tsv tsv (transcript quantifications) 25.0 MB
ENCFF500KKE.tsv tsv (transcript quantifications) 24.9 MB
ENCFF500NQW.bigWig bigWig (minus strand signal of unique reads) 65.4 MB
ENCFF505COV.tsv tsv (gene quantifications) 9.1 MB
ENCFF505XWU.bigWig bigWig (plus strand signal of all reads) 69.1 MB
ENCFF535VEI.bam bam (transcriptome alignments) 7.8 GB
ENCFF565RUK.bigWig bigWig (minus strand signal of unique reads) 62.3 MB
ENCFF585KQT.bigWig bigWig (minus strand signal of unique reads) 61.9 MB
ENCFF599YLN.bigWig bigWig (minus strand signal of all reads) 64.9 MB
ENCFF632AXM.tsv tsv (transcript quantifications) 29.9 MB
ENCFF638CLX.bigWig bigWig (plus strand signal of unique reads) 64.9 MB
ENCFF639RPR.tar tar (differential splicing quantifications) 3.2 MB
ENCFF640FJX.bigWig bigWig (minus strand signal of all reads) 67.9 MB
ENCFF649QHP.bigWig bigWig (minus strand signal of all reads) 67.1 MB
ENCFF668PNU.bigWig bigWig (minus strand signal of all reads) 71.8 MB
ENCFF672QSD.bigWig bigWig (plus strand signal of all reads) 72.9 MB
ENCFF680XKT.fastq fastq (reads) 3.0 GB
ENCFF683DTV.bigWig bigWig (minus strand signal of unique reads) 63.1 MB
ENCFF688FBC.bigWig bigWig (minus strand signal of all reads) 72.9 MB
ENCFF711UAS.bigWig bigWig (minus strand signal of unique reads) 66.5 MB
ENCFF712FYJ.tsv tsv (gene quantifications) 10.4 MB
ENCFF714DEB.fastq fastq (reads) 2.7 GB
ENCFF719TWR.bam bam (alignments) 5.2 GB
ENCFF736XII.bigWig bigWig (minus strand signal of all reads) 64.4 MB
ENCFF749JJU.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF790CSI.bigWig bigWig (plus strand signal of unique reads) 66.6 MB
ENCFF794JHZ.tsv tsv (gene quantifications) 9.1 MB
ENCFF795DCX.bigWig bigWig (plus strand signal of all reads) 65.9 MB
ENCFF798BLO.bigWig bigWig (plus strand signal of unique reads) 66.9 MB
ENCFF807TIS.bigWig bigWig (plus strand signal of unique reads) 64.4 MB
ENCFF809EGB.fastq fastq (reads) 2.8 GB
ENCFF813NLI.bigWig bigWig (plus strand signal of all reads) 72.3 MB
ENCFF824IGL.bam bam (alignments) 4.6 GB
ENCFF831DCR.bigWig bigWig (plus strand signal of all reads) 67.2 MB
ENCFF842XKM.bam bam (alignments) 5.6 GB
ENCFF861GDX.bigWig bigWig (plus strand signal of unique reads) 64.4 MB
ENCFF862XIZ.bigWig bigWig (plus strand signal of unique reads) 62.3 MB
ENCFF881CRP.bigWig bigWig (minus strand signal of unique reads) 63.4 MB
ENCFF884HHB.bigWig bigWig (minus strand signal of all reads) 72.8 MB
ENCFF884WAU.bam bam (transcriptome alignments) 8.5 GB
ENCFF900JVN.bigWig bigWig (minus strand signal of unique reads) 65.4 MB
ENCFF939NSL.bam bam (transcriptome alignments) 7.0 GB
ENCFF949KOV.bam bam (alignments) 4.4 GB
ENCFF957QKN.tsv tsv (transcript quantifications) 29.8 MB
ENCFF998DIC.bigWig bigWig (plus strand signal of unique reads) 67.9 MB
ENCSR057GCF ENCSR · via encode_api

shRNA knockdown against TIA1 in HepG2 cells followed by RNA-seq. (TIA1-BGHLV12)

Homo sapiens

92 data files
FileTypeSize
ENCFF008WIV.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 72.5 MB
ENCFF016WUI.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF032PSS.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.3 MB
ENCFF059QSG.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 73.0 MB
ENCFF084WEH.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.3 MB
ENCFF095EUI.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 16.1 MB
ENCFF102AHQ.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 80.8 MB
ENCFF110AAB.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 79.1 MB
ENCFF116YBO.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF129GZK.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 80.6 MB
ENCFF143PAE.bam bam (alignments); assembly: hg19; genome annotation: V19 4.1 GB
ENCFF149GIE.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 5.9 GB
ENCFF149JIK.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 74.7 MB
ENCFF159ZXN.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 78.5 MB
ENCFF179GFU.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 6.8 GB
ENCFF191FFI.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 73.0 MB
ENCFF199DKT.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.9 MB
ENCFF213GMC.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF243YSW.bam bam (alignments); assembly: hg19; genome annotation: V19 4.8 GB
ENCFF247QRI.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 90.2 MB
ENCFF249OIA.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 80.4 MB
ENCFF252IHW.bam bam (alignments); assembly: hg19; genome annotation: V19 4.1 GB
ENCFF255VGG.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 6.0 GB
ENCFF258OVK.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF258QZL.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF259FAP.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 80.8 MB
ENCFF298LYN.bam bam (alignments); assembly: hg19; genome annotation: V19 5.5 GB
ENCFF325FQK.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF332UXY.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF333THO.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 82.0 MB
ENCFF338NQR.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 65.1 MB
ENCFF338TUE.fastq fastq (reads) 2.6 GB
ENCFF342XPM.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 7.6 GB
ENCFF347ELF.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 82.4 MB
ENCFF389ICG.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 66.8 MB
ENCFF399WES.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 82.3 MB
ENCFF419FYV.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF433FVR.bam bam (alignments); assembly: hg19; genome annotation: V19 4.7 GB
ENCFF438EUT.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 73.3 MB
ENCFF448BMO.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.9 GB
ENCFF452UBW.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF467GOS.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 80.5 MB
ENCFF496QSP.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 3.7 MB
ENCFF499NXH.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 6.8 GB
ENCFF512YWA.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 69.1 MB
ENCFF519KHU.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.2 GB
ENCFF525MSS.bam bam (alignments); assembly: GRCh38; genome annotation: V29 5.6 GB
ENCFF526YUO.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 76.3 MB
ENCFF536GAS.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 74.2 MB
ENCFF556ZRQ.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 80.6 MB
ENCFF578TWY.fastq fastq (reads) 2.7 GB
ENCFF598OEY.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 79.3 MB
ENCFF608IOR.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 77.9 MB
ENCFF623VPY.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 83.0 MB
ENCFF641SOT.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 82.7 MB
ENCFF642WGZ.bam bam (alignments); assembly: GRCh38; genome annotation: V29 4.9 GB
ENCFF667IMC.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 72.2 MB
ENCFF669XFB.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 4.3 MB
ENCFF674MFE.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 90.5 MB
ENCFF682PLR.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 72.3 MB
ENCFF690DUO.bam bam (alignments); assembly: hg19; genome annotation: V19 4.7 GB
ENCFF695YNR.fastq fastq (reads) 3.0 GB
ENCFF709AFE.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 90.2 MB
ENCFF716OPD.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 88.9 MB
ENCFF718NLS.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 5.5 MB
ENCFF724NZY.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.7 MB
ENCFF729WTG.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.6 MB
ENCFF732FSX.bam bam (alignments); assembly: GRCh38; genome annotation: V24 5.6 GB
ENCFF741EQA.fastq fastq (reads) 3.1 GB
ENCFF763MTR.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 77.1 MB
ENCFF767VCN.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 89.3 MB
ENCFF773YYY.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 77.2 MB
ENCFF784NMJ.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.8 GB
ENCFF787GVZ.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF803WWW.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 71.1 MB
ENCFF808NWJ.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 70.3 MB
ENCFF829LOH.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 6.6 GB
ENCFF859XJG.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 69.8 MB
ENCFF866TTN.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 80.8 MB
ENCFF867FPB.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 3.1 MB
ENCFF871QWF.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 81.7 MB
ENCFF889GMC.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 74.2 MB
ENCFF903OBT.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF907NVY.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF912FAZ.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 82.0 MB
ENCFF928EAI.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 68.7 MB
ENCFF947POE.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 70.9 MB
ENCFF969TXI.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 74.6 MB
ENCFF972JNH.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 74.8 MB
ENCFF973ZKV.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 88.9 MB
ENCFF987RGO.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 73.4 MB
ENCFF997EKI.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 81.6 MB
ENCSR715XZS ENCSR · via encode_api

shRNA knockdown against XRCC5 in K562 cells followed by RNA-seq. (XRCC5 BGKLV13)

Homo sapiens

92 data files
FileTypeSize
ENCFF002TLT.bam bam (alignments) 4.3 GB
ENCFF003TMV.fastq fastq (reads) 2.2 GB
ENCFF048EBI.bigWig bigWig (minus strand signal of unique reads) 73.4 MB
ENCFF073OTB.bigWig bigWig (minus strand signal of unique reads) 73.2 MB
ENCFF087IFJ.bigWig bigWig (plus strand signal of unique reads) 67.5 MB
ENCFF088DCZ.bigWig bigWig (minus strand signal of unique reads) 76.7 MB
ENCFF089EKF.bigWig bigWig (plus strand signal of all reads) 84.4 MB
ENCFF091GJX.bigWig bigWig (minus strand signal of all reads) 72.7 MB
ENCFF092FWT.tsv tsv (gene quantifications) 9.4 MB
ENCFF097GIL.bigWig bigWig (plus strand signal of unique reads) 71.1 MB
ENCFF099RKT.tsv tsv (gene quantifications) 9.4 MB
ENCFF103AUW.bigWig bigWig (plus strand signal of all reads) 83.0 MB
ENCFF105XFP.bigWig bigWig (minus strand signal of unique reads) 69.0 MB
ENCFF118YLU.bigWig bigWig (minus strand signal of all reads) 77.0 MB
ENCFF139HYF.fastq fastq (reads) 2.4 GB
ENCFF148JMV.bam bam (transcriptome alignments) 5.3 GB
ENCFF151KLL.tsv tsv (gene quantifications) 9.1 MB
ENCFF170TYI.bigWig bigWig (minus strand signal of unique reads) 76.7 MB
ENCFF186MBY.bigWig bigWig (minus strand signal of all reads) 83.4 MB
ENCFF199LGH.bam bam (transcriptome alignments) 5.3 GB
ENCFF203HTU.bigWig bigWig (plus strand signal of all reads) 77.7 MB
ENCFF205KBS.bam bam (alignments) 4.3 GB
ENCFF226EKW.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF235PCJ.bam bam (alignments) 3.5 GB
ENCFF238SYN.bigWig bigWig (plus strand signal of unique reads) 74.9 MB
ENCFF287IZY.bigWig bigWig (plus strand signal of unique reads) 74.6 MB
ENCFF288UHA.bigWig bigWig (plus strand signal of all reads) 87.9 MB
ENCFF295UTJ.bigWig bigWig (plus strand signal of unique reads) 70.3 MB
ENCFF303GRA.fastq fastq (reads) 2.3 GB
ENCFF306FLI.bigWig bigWig (minus strand signal of all reads) 75.0 MB
ENCFF308PXS.tsv tsv (transcript quantifications) 24.9 MB
ENCFF315CVA.bigWig bigWig (plus strand signal of unique reads) 78.3 MB
ENCFF328ZLP.tsv tsv (transcript quantifications) 25.3 MB
ENCFF371NJO.bigWig bigWig (minus strand signal of unique reads) 66.0 MB
ENCFF374KCT.tsv tsv (transcript quantifications) 27.3 MB
ENCFF379XBH.bigWig bigWig (minus strand signal of unique reads) 72.0 MB
ENCFF390ALB.bam bam (transcriptome alignments) 5.0 GB
ENCFF425TSB.tsv tsv (transcript quantifications) 25.3 MB
ENCFF432DYZ.bigWig bigWig (plus strand signal of all reads) 75.9 MB
ENCFF436ZEI.bigWig bigWig (minus strand signal of all reads) 82.0 MB
ENCFF440APW.bigWig bigWig (minus strand signal of all reads) 83.4 MB
ENCFF447FAS.tsv tsv (differential expression quantifications) 5.5 MB
ENCFF458GDF.bigWig bigWig (plus strand signal of unique reads) 73.5 MB
ENCFF470ZPG.tar tar (differential splicing quantifications) 3.7 MB
ENCFF491UMR.bigWig bigWig (minus strand signal of unique reads) 69.7 MB
ENCFF493DCD.bam bam (alignments) 3.8 GB
ENCFF511BSU.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF511YRL.bigWig bigWig (minus strand signal of unique reads) 71.9 MB
ENCFF524GCZ.tsv tsv (transcript quantifications) 29.8 MB
ENCFF527BAI.bigWig bigWig (plus strand signal of all reads) 84.4 MB
ENCFF543RRN.bam bam (transcriptome alignments) 5.9 GB
ENCFF544SZF.bam bam (alignments) 3.7 GB
ENCFF574IUQ.tar tar (differential splicing quantifications) 4.4 MB
ENCFF578MPX.bigWig bigWig (plus strand signal of unique reads) 71.5 MB
ENCFF581UKK.bigWig bigWig (plus strand signal of all reads) 79.8 MB
ENCFF585BSY.bigWig bigWig (minus strand signal of all reads) 76.3 MB
ENCFF610XFY.bigWig bigWig (minus strand signal of all reads) 87.1 MB
ENCFF614HPB.bam bam (alignments) 4.5 GB
ENCFF617YJF.bam bam (alignments) 3.7 GB
ENCFF625TCG.fastq fastq (reads) 2.3 GB
ENCFF633RWD.bam bam (alignments) 4.1 GB
ENCFF636VKI.tsv tsv (gene quantifications) 10.4 MB
ENCFF654VGN.bigWig bigWig (plus strand signal of unique reads) 78.3 MB
ENCFF660ROQ.tsv tsv (transcript quantifications) 29.8 MB
ENCFF678ZPJ.bigWig bigWig (minus strand signal of unique reads) 76.6 MB
ENCFF682MOY.tsv tsv (gene quantifications) 9.1 MB
ENCFF684EAI.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF729HWI.tsv tsv (gene quantifications) 10.4 MB
ENCFF733ANB.bigWig bigWig (minus strand signal of all reads) 85.9 MB
ENCFF738RTV.bigWig bigWig (plus strand signal of all reads) 77.5 MB
ENCFF741RIS.bigWig bigWig (plus strand signal of all reads) 73.8 MB
ENCFF770XYZ.bigWig bigWig (plus strand signal of all reads) 87.9 MB
ENCFF775HVR.tsv tsv (transcript quantifications) 27.4 MB
ENCFF796EWL.bigWig bigWig (minus strand signal of all reads) 78.6 MB
ENCFF798AFO.bigWig bigWig (minus strand signal of unique reads) 73.0 MB
ENCFF803VDB.bam bam (transcriptome alignments) 5.6 GB
ENCFF813NZL.bam bam (alignments) 3.5 GB
ENCFF822DOQ.bigWig bigWig (plus strand signal of all reads) 86.8 MB
ENCFF837YQD.tsv tsv (transcript quantifications) 24.9 MB
ENCFF838FIR.bigWig bigWig (plus strand signal of unique reads) 73.3 MB
ENCFF857TIT.tar tar (differential splicing quantifications) 15.5 MB
ENCFF861GYF.bigWig bigWig (minus strand signal of all reads) 87.1 MB
ENCFF882NTS.bigWig bigWig (plus strand signal of unique reads) 74.9 MB
ENCFF896FWA.bam bam (alignments) 4.4 GB
ENCFF925LNR.bigWig bigWig (plus strand signal of unique reads) 78.3 MB
ENCFF925TVO.bam bam (alignments) 3.6 GB
ENCFF932IVI.bam bam (transcriptome alignments) 5.0 GB
ENCFF944EYK.bigWig bigWig (plus strand signal of all reads) 76.6 MB
ENCFF953BPR.tsv tsv (differential expression quantifications) 4.1 MB
ENCFF962WRM.bigWig bigWig (minus strand signal of unique reads) 69.4 MB
ENCFF980WMA.bam bam (alignments) 4.5 GB
ENCFF996BSC.bigWig bigWig (minus strand signal of all reads) 75.4 MB
ENCSR597XHH ENCSR · via encode_api

shRNA knockdown against SRSF9 in HepG2 cells followed by RNA-seq. (SRSF9-BGHLV12)

Homo sapiens

92 data files
FileTypeSize
ENCFF008TAE.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 67.3 MB
ENCFF009KZE.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 77.6 MB
ENCFF011ZXM.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 78.8 MB
ENCFF042PYP.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 77.3 MB
ENCFF054JNS.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 3.2 MB
ENCFF079CHI.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 75.6 MB
ENCFF080EPI.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 86.3 MB
ENCFF082DVB.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.2 MB
ENCFF091AUE.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 73.2 MB
ENCFF097OEG.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 73.0 MB
ENCFF101MHH.bam bam (alignments); assembly: GRCh38; genome annotation: V29 5.0 GB
ENCFF102LOD.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 66.0 MB
ENCFF110DJN.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF110WMK.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 70.0 MB
ENCFF117BOJ.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF117XEK.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF135YGJ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 75.3 MB
ENCFF138JNR.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 15.6 MB
ENCFF143FJB.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.9 MB
ENCFF147TFX.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF183GEY.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 85.4 MB
ENCFF195UCV.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 6.1 GB
ENCFF207RRU.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 74.2 MB
ENCFF222VIH.bam bam (alignments); assembly: hg19; genome annotation: V19 4.2 GB
ENCFF229WWB.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 72.6 MB
ENCFF257ITQ.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 86.9 MB
ENCFF275BLA.fastq fastq (reads) 2.7 GB
ENCFF277DBW.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 69.5 MB
ENCFF277PIP.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 78.0 MB
ENCFF283YNH.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.3 GB
ENCFF311QKS.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 69.9 MB
ENCFF327RCC.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 79.6 MB
ENCFF329PJZ.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.7 MB
ENCFF353SWA.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 74.4 MB
ENCFF356APJ.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 86.0 MB
ENCFF359NHC.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF387GYX.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 71.2 MB
ENCFF391OVD.fastq fastq (reads) 2.9 GB
ENCFF396PEK.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 3.0 MB
ENCFF429PPY.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF491IXG.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF496LVK.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 77.6 MB
ENCFF501MVX.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 5.6 MB
ENCFF515DAB.fastq fastq (reads) 2.7 GB
ENCFF516KCI.bam bam (alignments); assembly: GRCh38; genome annotation: V24 5.0 GB
ENCFF527PYV.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF529ZBB.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 73.3 MB
ENCFF560LUL.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 70.9 MB
ENCFF579ZYG.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 69.1 MB
ENCFF582IGS.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 75.4 MB
ENCFF601OFU.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 3.9 MB
ENCFF621MEO.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 74.4 MB
ENCFF627YAR.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 86.0 MB
ENCFF642MNU.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 76.6 MB
ENCFF664KDY.bam bam (alignments); assembly: hg19; genome annotation: V19 5.3 GB
ENCFF665FGJ.bam bam (alignments); assembly: hg19; genome annotation: V19 4.2 GB
ENCFF667XFW.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 74.5 MB
ENCFF693KDJ.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF714TLQ.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 6.1 GB
ENCFF736NNP.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 73.9 MB
ENCFF740YVP.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 81.1 MB
ENCFF752QBE.bam bam (alignments); assembly: GRCh38; genome annotation: V24 5.4 GB
ENCFF754SUW.bam bam (alignments); assembly: hg19; genome annotation: V19 4.9 GB
ENCFF755MHT.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF757RRR.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 69.0 MB
ENCFF763ICV.fastq fastq (reads) 3.0 GB
ENCFF763XGP.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 70.2 MB
ENCFF782RUF.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 7.4 GB
ENCFF784MHB.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 78.4 MB
ENCFF805JWY.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 6.8 GB
ENCFF812CNF.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 78.7 MB
ENCFF818NXH.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 6.6 GB
ENCFF834DUF.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 86.9 MB
ENCFF848QRM.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 81.3 MB
ENCFF859IVJ.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 80.5 MB
ENCFF859XGA.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 79.1 MB
ENCFF869CAH.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 72.9 MB
ENCFF870AJH.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 6.6 GB
ENCFF874SFF.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF875OYZ.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 79.7 MB
ENCFF878YQH.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.3 MB
ENCFF879FTB.bam bam (alignments); assembly: hg19; genome annotation: V19 4.6 GB
ENCFF902TTG.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 74.6 MB
ENCFF921WIW.bam bam (alignments); assembly: hg19; genome annotation: V19 4.6 GB
ENCFF927VCB.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF951ZVO.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 81.9 MB
ENCFF959UXT.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 81.9 MB
ENCFF968YHY.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 4.4 MB
ENCFF973PFP.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 81.1 MB
ENCFF977AVT.bam bam (alignments); assembly: GRCh38; genome annotation: V29 5.4 GB
ENCFF985DJT.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 73.4 MB
ENCFF997YVO.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.6 GB
ENCSR746EKS ENCSR · via encode_api

shRNA knockdown against MAGOH in HepG2 cells followed by RNA-seq. (MAGOH-BGHLV12)

Homo sapiens

92 data files
FileTypeSize
ENCFF002UBX.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.4 MB
ENCFF019EEU.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 88.0 MB
ENCFF034SDM.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 7.2 GB
ENCFF045JYP.bam bam (alignments); assembly: hg19; genome annotation: V19 5.1 GB
ENCFF049FLJ.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 101.4 MB
ENCFF064ULR.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF079WEC.bam bam (alignments); assembly: GRCh38; genome annotation: V29 6.3 GB
ENCFF093GWZ.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 96.1 MB
ENCFF100HJE.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 92.7 MB
ENCFF106RVU.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 86.1 MB
ENCFF108VKZ.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 16.8 MB
ENCFF109AEF.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.9 MB
ENCFF116UYW.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 93.9 MB
ENCFF120KPF.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF124MNL.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.4 MB
ENCFF140BSS.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 91.9 MB
ENCFF148LVQ.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 89.5 MB
ENCFF153ROK.bam bam (alignments); assembly: GRCh38; genome annotation: V24 6.3 GB
ENCFF181GAF.bam bam (alignments); assembly: hg19; genome annotation: V19 5.0 GB
ENCFF184WNH.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 88.1 MB
ENCFF197MXY.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 101.5 MB
ENCFF224YYY.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 96.1 MB
ENCFF229MZD.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF231JSG.bam bam (alignments); assembly: GRCh38; genome annotation: V29 5.3 GB
ENCFF233BKW.fastq fastq (reads) 3.3 GB
ENCFF233WFP.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 90.0 MB
ENCFF246ARU.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 99.9 MB
ENCFF255GCK.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 88.7 MB
ENCFF259KYM.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 5.6 MB
ENCFF265DNZ.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 101.5 MB
ENCFF270DWQ.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 104.1 MB
ENCFF273VOT.bam bam (alignments); assembly: hg19; genome annotation: V19 4.3 GB
ENCFF280CJB.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 104.1 MB
ENCFF286BQE.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF291EMF.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 87.7 MB
ENCFF295XXJ.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 3.0 MB
ENCFF303LTZ.fastq fastq (reads) 3.4 GB
ENCFF308ELQ.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF346ZXG.fastq fastq (reads) 2.8 GB
ENCFF383JYA.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 95.9 MB
ENCFF397ATG.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 96.1 MB
ENCFF407SZU.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 91.2 MB
ENCFF409FFI.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 90.4 MB
ENCFF417CAB.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF422KXN.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 88.5 MB
ENCFF443RLP.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 105.7 MB
ENCFF500JHE.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 105.7 MB
ENCFF513AKA.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 89.7 MB
ENCFF529TVK.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 4.4 MB
ENCFF539LRR.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF547SNW.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 92.1 MB
ENCFF566NDZ.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 95.4 MB
ENCFF581YTW.bam bam (alignments); assembly: GRCh38; genome annotation: V24 5.3 GB
ENCFF619USU.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 104.6 MB
ENCFF624IFO.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 94.0 MB
ENCFF629OTS.bam bam (alignments); assembly: hg19; genome annotation: V19 5.0 GB
ENCFF648VEB.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF686SGV.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 100.0 MB
ENCFF689YBQ.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 86.5 MB
ENCFF701CTE.fastq fastq (reads) 2.9 GB
ENCFF716MKE.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 91.2 MB
ENCFF727IJO.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 94.5 MB
ENCFF740SRX.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 5.6 MB
ENCFF770SYJ.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 93.5 MB
ENCFF773ZAM.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 84.6 MB
ENCFF775WHK.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 7.5 GB
ENCFF776JMC.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 4.4 MB
ENCFF789GGG.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 90.6 MB
ENCFF791RWK.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 91.9 MB
ENCFF793ATP.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF794RGC.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 86.7 MB
ENCFF802QIO.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF803FWJ.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 100.1 MB
ENCFF809RUA.bam bam (alignments); assembly: hg19; genome annotation: V19 4.3 GB
ENCFF812TJO.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 8.5 GB
ENCFF821TFG.bam bam (alignments); assembly: GRCh38; genome annotation: V24 5.2 GB
ENCFF822YXC.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 83.8 MB
ENCFF838FJH.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF849NNT.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 93.2 MB
ENCFF849TUS.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.8 MB
ENCFF887ITG.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 86.6 MB
ENCFF920JKU.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 81.7 MB
ENCFF923PUA.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 90.6 MB
ENCFF925KRH.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 6.3 GB
ENCFF929YFS.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 103.3 MB
ENCFF947LUZ.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 93.8 MB
ENCFF950HSR.bam bam (alignments); assembly: hg19; genome annotation: V19 5.9 GB
ENCFF956KXG.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 94.0 MB
ENCFF965JGB.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.4 GB
ENCFF965PGS.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 7.5 GB
ENCFF982IFK.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF982ZEU.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 6.4 GB
ENCSR998RZI ENCSR · via encode_api

shRNA knockdown against TAF15 in HepG2 cells followed by RNA-seq. (TAF15-BGHLV12)

Homo sapiens

92 data files
FileTypeSize
ENCFF020IHZ.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF025CAE.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF034OHH.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 78.2 MB
ENCFF036DRI.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.4 MB
ENCFF037VYV.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 81.8 MB
ENCFF050DEJ.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 15.9 MB
ENCFF080FOO.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 87.0 MB
ENCFF080OLL.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 6.4 GB
ENCFF084JKC.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 3.2 MB
ENCFF093YUX.fastq fastq (reads) 3.4 GB
ENCFF097PLN.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 82.8 MB
ENCFF097QAP.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 79.8 MB
ENCFF101JUG.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 6.4 GB
ENCFF109SNV.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 3.9 MB
ENCFF112FOA.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.8 MB
ENCFF119SDE.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 89.8 MB
ENCFF127AVC.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 77.6 MB
ENCFF129GOE.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 99.7 MB
ENCFF140JCP.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 90.1 MB
ENCFF154AKW.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 91.6 MB
ENCFF161FLY.bam bam (alignments); assembly: hg19; genome annotation: V19 4.5 GB
ENCFF166NGR.bam bam (alignments); assembly: hg19; genome annotation: V19 4.5 GB
ENCFF184FWC.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 99.7 MB
ENCFF222HSY.bam bam (alignments); assembly: GRCh38; genome annotation: V24 5.5 GB
ENCFF230STB.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.6 GB
ENCFF246KVW.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 4.4 MB
ENCFF258SBL.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 3.0 MB
ENCFF258YCJ.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 81.2 MB
ENCFF295ZBA.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 91.8 MB
ENCFF334VSA.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 82.7 MB
ENCFF354ISJ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 82.9 MB
ENCFF377CBN.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 5.6 MB
ENCFF385WCU.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 86.8 MB
ENCFF389SHL.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 91.9 MB
ENCFF395HKG.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 81.3 MB
ENCFF405YZY.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 90.8 MB
ENCFF421NOL.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 91.7 MB
ENCFF421SOO.bam bam (alignments); assembly: GRCh38; genome annotation: V29 6.5 GB
ENCFF422YOO.bam bam (alignments); assembly: GRCh38; genome annotation: V29 5.4 GB
ENCFF429IAQ.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF433AVB.fastq fastq (reads) 3.5 GB
ENCFF441BUH.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 79.2 MB
ENCFF470EXD.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 90.1 MB
ENCFF476OYU.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 79.1 MB
ENCFF493UIX.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 7.1 GB
ENCFF498XWX.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF500TSH.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 92.0 MB
ENCFF510VAL.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF519QGV.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF521QAA.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.9 MB
ENCFF529JYM.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 7.8 GB
ENCFF530PWO.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.3 MB
ENCFF531USK.bam bam (alignments); assembly: hg19; genome annotation: V19 5.2 GB
ENCFF553WMS.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 7.8 GB
ENCFF557SAP.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 82.9 MB
ENCFF561VAL.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 82.9 MB
ENCFF569VMN.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 90.0 MB
ENCFF584EOF.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 85.0 MB
ENCFF607LSR.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 100.9 MB
ENCFF621EMB.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 80.9 MB
ENCFF635UST.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 75.1 MB
ENCFF636KSX.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 84.8 MB
ENCFF641HZL.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 73.6 MB
ENCFF643FDI.fastq fastq (reads) 2.8 GB
ENCFF644ASW.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 89.7 MB
ENCFF647FRM.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 90.6 MB
ENCFF650YBC.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF658NLK.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 88.1 MB
ENCFF737ILU.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 81.2 MB
ENCFF737VCN.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF746ROR.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 92.0 MB
ENCFF748AJM.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 85.0 MB
ENCFF748SJT.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 80.1 MB
ENCFF777JVW.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 86.7 MB
ENCFF777VEO.bam bam (alignments); assembly: hg19; genome annotation: V19 6.3 GB
ENCFF807SBK.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 90.9 MB
ENCFF813TQJ.bam bam (alignments); assembly: hg19; genome annotation: V19 5.4 GB
ENCFF823MWL.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 93.4 MB
ENCFF825RNJ.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 90.9 MB
ENCFF827FYP.bam bam (alignments); assembly: GRCh38; genome annotation: V24 5.4 GB
ENCFF844EHC.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF858LPO.bam bam (alignments); assembly: GRCh38; genome annotation: V24 6.5 GB
ENCFF859UBR.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 98.9 MB
ENCFF881PAB.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 100.9 MB
ENCFF883WOZ.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF893BDX.fastq fastq (reads) 2.9 GB
ENCFF896ISC.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 83.8 MB
ENCFF955LCT.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF955OUP.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 8.7 GB
ENCFF970XIQ.bam bam (alignments); assembly: hg19; genome annotation: V19 5.4 GB
ENCFF984VTW.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF989FPN.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 99.9 MB
ENCSR135LXL ENCSR · via encode_api

Control shRNA against no target in HepG2 cells followed by RNA-seq. (NT_BGHLV20B)

Homo sapiens

84 data files
FileTypeSize
ENCFF010CSX.bigWig bigWig (plus strand signal of unique reads) 69.2 MB
ENCFF014TBH.bam bam (alignments) 6.5 GB
ENCFF035LPL.tsv tsv (gene quantifications) 9.5 MB
ENCFF037ELI.bigWig bigWig (minus strand signal of unique reads) 76.6 MB
ENCFF043IJJ.bigWig bigWig (plus strand signal of unique reads) 81.6 MB
ENCFF060OXU.tsv tsv (transcript quantifications) 25.4 MB
ENCFF078OMM.bigWig bigWig (minus strand signal of unique reads) 79.3 MB
ENCFF088BOX.bigWig bigWig (plus strand signal of all reads) 84.0 MB
ENCFF089CRL.bigWig bigWig (plus strand signal of all reads) 87.5 MB
ENCFF108KML.fastq fastq (reads) 3.6 GB
ENCFF111LSY.bam bam (alignments) 6.4 GB
ENCFF118CQB.bigWig bigWig (minus strand signal of all reads) 96.1 MB
ENCFF118EOH.bigWig bigWig (minus strand signal of unique reads) 67.2 MB
ENCFF121TSI.tsv tsv (gene quantifications) 9.5 MB
ENCFF150LUW.bigWig bigWig (plus strand signal of unique reads) 74.3 MB
ENCFF151ZKC.bigWig bigWig (minus strand signal of unique reads) 72.2 MB
ENCFF179HKM.bam bam (alignments) 6.4 GB
ENCFF184MXV.bigWig bigWig (minus strand signal of unique reads) 72.2 MB
ENCFF187WFA.bigWig bigWig (minus strand signal of all reads) 94.3 MB
ENCFF188ACJ.bigWig bigWig (minus strand signal of unique reads) 85.5 MB
ENCFF189KOO.bigWig bigWig (plus strand signal of all reads) 71.7 MB
ENCFF190FNH.bam bam (alignments) 5.2 GB
ENCFF190MTR.bigWig bigWig (minus strand signal of unique reads) 71.9 MB
ENCFF209FPN.bam bam (transcriptome alignments) 8.9 GB
ENCFF212WNE.bigWig bigWig (minus strand signal of unique reads) 63.2 MB
ENCFF226MZL.fastq fastq (reads) 3.6 GB
ENCFF235YEH.bigWig bigWig (minus strand signal of all reads) 79.9 MB
ENCFF241EKN.bigWig bigWig (plus strand signal of unique reads) 88.0 MB
ENCFF249EDG.bigWig bigWig (minus strand signal of all reads) 70.2 MB
ENCFF271POL.bigWig bigWig (plus strand signal of unique reads) 68.5 MB
ENCFF274BVP.tsv tsv (gene quantifications) 10.4 MB
ENCFF279SKK.bigWig bigWig (plus strand signal of unique reads) 65.3 MB
ENCFF315GCM.bam bam (transcriptome alignments) 7.9 GB
ENCFF327TAF.bigWig bigWig (plus strand signal of unique reads) 88.0 MB
ENCFF336UVQ.bigWig bigWig (minus strand signal of all reads) 68.1 MB
ENCFF356DCX.bigWig bigWig (minus strand signal of all reads) 96.0 MB
ENCFF366PJV.bigWig bigWig (minus strand signal of unique reads) 66.6 MB
ENCFF379JAM.bigWig bigWig (minus strand signal of unique reads) 78.3 MB
ENCFF402MLF.bam bam (transcriptome alignments) 7.8 GB
ENCFF403LSL.tsv tsv (gene quantifications) 9.1 MB
ENCFF416XAR.bam bam (alignments) 6.5 GB
ENCFF417FFY.bigWig bigWig (plus strand signal of unique reads) 80.5 MB
ENCFF439BPS.bigWig bigWig (plus strand signal of unique reads) 74.3 MB
ENCFF485XVR.bam bam (alignments) 5.2 GB
ENCFF512QIR.fastq fastq (reads) 3.6 GB
ENCFF521FKB.tsv tsv (transcript quantifications) 27.3 MB
ENCFF548DEG.bigWig bigWig (plus strand signal of unique reads) 79.0 MB
ENCFF561JQN.tsv tsv (transcript quantifications) 25.0 MB
ENCFF562WKW.bigWig bigWig (plus strand signal of all reads) 81.6 MB
ENCFF612IJX.bam bam (transcriptome alignments) 8.9 GB
ENCFF614PCS.tsv tsv (transcript quantifications) 27.4 MB
ENCFF621VUW.bigWig bigWig (plus strand signal of all reads) 97.9 MB
ENCFF647DYV.tsv tsv (transcript quantifications) 25.4 MB
ENCFF656DMP.bigWig bigWig (minus strand signal of all reads) 82.1 MB
ENCFF662ZEB.bigWig bigWig (minus strand signal of unique reads) 85.5 MB
ENCFF711NDL.bam bam (alignments) 5.2 GB
ENCFF729GXM.bigWig bigWig (minus strand signal of all reads) 80.0 MB
ENCFF732VDT.bam bam (alignments) 5.3 GB
ENCFF755EEZ.bigWig bigWig (plus strand signal of all reads) 81.3 MB
ENCFF772LMC.bam bam (alignments) 5.2 GB
ENCFF777HYA.bigWig bigWig (minus strand signal of all reads) 72.4 MB
ENCFF779DDR.bigWig bigWig (plus strand signal of all reads) 98.0 MB
ENCFF800WJE.bigWig bigWig (plus strand signal of all reads) 81.6 MB
ENCFF805RZU.bigWig bigWig (plus strand signal of all reads) 74.0 MB
ENCFF813UMR.bigWig bigWig (plus strand signal of all reads) 96.0 MB
ENCFF816KYC.fastq fastq (reads) 3.6 GB
ENCFF820YUS.bam bam (transcriptome alignments) 7.9 GB
ENCFF840PWF.bigWig bigWig (plus strand signal of unique reads) 88.0 MB
ENCFF849FQP.bigWig bigWig (minus strand signal of all reads) 85.6 MB
ENCFF850QIM.bigWig bigWig (plus strand signal of unique reads) 74.1 MB
ENCFF856PSU.bigWig bigWig (minus strand signal of all reads) 80.0 MB
ENCFF859IZC.bam bam (alignments) 5.4 GB
ENCFF873PCL.bigWig bigWig (plus strand signal of all reads) 69.7 MB
ENCFF890JCQ.tsv tsv (gene quantifications) 10.4 MB
ENCFF896UJN.tsv tsv (transcript quantifications) 29.9 MB
ENCFF899UQY.tsv tsv (gene quantifications) 9.1 MB
ENCFF923FRJ.bam bam (transcriptome alignments) 7.9 GB
ENCFF930OYV.bam bam (alignments) 6.2 GB
ENCFF934UWJ.bam bam (alignments) 6.3 GB
ENCFF948HNE.tsv tsv (transcript quantifications) 25.0 MB
ENCFF950CMW.bigWig bigWig (minus strand signal of unique reads) 85.5 MB
ENCFF970ZUC.tsv tsv (transcript quantifications) 29.9 MB
ENCFF991ADL.bigWig bigWig (minus strand signal of all reads) 84.0 MB
ENCFF996DID.bigWig bigWig (plus strand signal of all reads) 85.7 MB
ENCSR585KOJ ENCSR · via encode_api

Control shRNA against no target in HepG2 cells followed by RNA-seq. (NT_BGHLV31B)

Homo sapiens

84 data files
FileTypeSize
ENCFF010HCM.tsv tsv (transcript quantifications) 25.3 MB
ENCFF011KFI.fastq fastq (reads) 3.6 GB
ENCFF017OAA.bam bam (alignments) 6.0 GB
ENCFF026UPX.bigWig bigWig (minus strand signal of all reads) 76.3 MB
ENCFF027LEW.bigWig bigWig (plus strand signal of all reads) 93.6 MB
ENCFF036NGB.bigWig bigWig (plus strand signal of all reads) 91.8 MB
ENCFF051QYD.tsv tsv (transcript quantifications) 29.9 MB
ENCFF056MWZ.bigWig bigWig (plus strand signal of all reads) 93.6 MB
ENCFF064XIR.bam bam (transcriptome alignments) 8.0 GB
ENCFF070LWQ.tsv tsv (gene quantifications) 9.5 MB
ENCFF078XCS.bigWig bigWig (minus strand signal of unique reads) 82.6 MB
ENCFF081LJP.bam bam (alignments) 6.1 GB
ENCFF089FPE.bigWig bigWig (plus strand signal of all reads) 77.9 MB
ENCFF106MTF.bigWig bigWig (minus strand signal of unique reads) 81.6 MB
ENCFF116EJU.tsv tsv (gene quantifications) 9.5 MB
ENCFF123PUB.bigWig bigWig (plus strand signal of unique reads) 84.7 MB
ENCFF134CLH.bigWig bigWig (plus strand signal of all reads) 80.3 MB
ENCFF143RCK.bam bam (alignments) 6.0 GB
ENCFF157QHR.bam bam (alignments) 5.6 GB
ENCFF165DLR.bigWig bigWig (plus strand signal of all reads) 81.2 MB
ENCFF170BWW.bigWig bigWig (minus strand signal of all reads) 92.1 MB
ENCFF178VBQ.bam bam (alignments) 6.8 GB
ENCFF183ZLT.bigWig bigWig (minus strand signal of unique reads) 81.5 MB
ENCFF200CUU.fastq fastq (reads) 3.9 GB
ENCFF221LKX.bigWig bigWig (plus strand signal of unique reads) 83.7 MB
ENCFF225MVX.bigWig bigWig (plus strand signal of all reads) 79.5 MB
ENCFF229ZSO.bigWig bigWig (plus strand signal of all reads) 77.5 MB
ENCFF239LDQ.fastq fastq (reads) 3.9 GB
ENCFF261RLP.bigWig bigWig (plus strand signal of unique reads) 73.2 MB
ENCFF264TIS.bigWig bigWig (plus strand signal of unique reads) 75.0 MB
ENCFF266OIO.bam bam (transcriptome alignments) 7.4 GB
ENCFF273MAF.bigWig bigWig (minus strand signal of all reads) 78.7 MB
ENCFF277HIO.bigWig bigWig (plus strand signal of unique reads) 84.0 MB
ENCFF278EWB.bam bam (alignments) 6.6 GB
ENCFF302PSN.bigWig bigWig (minus strand signal of unique reads) 71.1 MB
ENCFF329PBR.bigWig bigWig (minus strand signal of unique reads) 72.8 MB
ENCFF346UWW.bigWig bigWig (plus strand signal of all reads) 94.0 MB
ENCFF363ROT.tsv tsv (gene quantifications) 9.1 MB
ENCFF376SXK.bam bam (alignments) 7.1 GB
ENCFF379UZE.bigWig bigWig (minus strand signal of all reads) 92.1 MB
ENCFF387STK.tsv tsv (transcript quantifications) 29.8 MB
ENCFF425LKJ.bigWig bigWig (minus strand signal of all reads) 76.4 MB
ENCFF449BQS.bigWig bigWig (minus strand signal of all reads) 90.4 MB
ENCFF459YFK.bam bam (transcriptome alignments) 7.4 GB
ENCFF473ZLE.bigWig bigWig (minus strand signal of unique reads) 70.1 MB
ENCFF486BTW.bigWig bigWig (minus strand signal of unique reads) 81.1 MB
ENCFF489TGU.bigWig bigWig (minus strand signal of all reads) 79.6 MB
ENCFF513ZQA.tsv tsv (transcript quantifications) 27.4 MB
ENCFF541XFO.bigWig bigWig (plus strand signal of unique reads) 74.1 MB
ENCFF543GXQ.bam bam (transcriptome alignments) 8.0 GB
ENCFF553MZR.tsv tsv (transcript quantifications) 27.4 MB
ENCFF607THC.bigWig bigWig (minus strand signal of all reads) 92.1 MB
ENCFF630SYM.tsv tsv (gene quantifications) 9.1 MB
ENCFF631TYZ.bigWig bigWig (plus strand signal of all reads) 93.4 MB
ENCFF638QHN.bigWig bigWig (plus strand signal of all reads) 77.8 MB
ENCFF691IVN.bigWig bigWig (plus strand signal of unique reads) 74.8 MB
ENCFF699ZZG.bigWig bigWig (minus strand signal of unique reads) 81.9 MB
ENCFF701HKR.fastq fastq (reads) 3.6 GB
ENCFF706GSM.bigWig bigWig (minus strand signal of all reads) 75.9 MB
ENCFF707TBM.bigWig bigWig (minus strand signal of all reads) 78.0 MB
ENCFF710FXC.bigWig bigWig (plus strand signal of unique reads) 83.8 MB
ENCFF714PZS.bigWig bigWig (plus strand signal of unique reads) 72.2 MB
ENCFF716WRK.bigWig bigWig (minus strand signal of unique reads) 73.1 MB
ENCFF735ZWX.bigWig bigWig (plus strand signal of unique reads) 75.1 MB
ENCFF761MBM.bam bam (alignments) 7.3 GB
ENCFF787CCQ.bam bam (alignments) 7.3 GB
ENCFF806OPB.bigWig bigWig (minus strand signal of all reads) 92.5 MB
ENCFF809ZXU.tsv tsv (gene quantifications) 10.4 MB
ENCFF810WHY.bigWig bigWig (plus strand signal of all reads) 94.0 MB
ENCFF831UXH.tsv tsv (transcript quantifications) 24.9 MB
ENCFF836ZPZ.bam bam (alignments) 5.5 GB
ENCFF840UWG.bam bam (alignments) 5.5 GB
ENCFF844FNN.bam bam (alignments) 6.8 GB
ENCFF850YHK.bigWig bigWig (minus strand signal of unique reads) 82.5 MB
ENCFF890HXN.bigWig bigWig (minus strand signal of all reads) 92.5 MB
ENCFF911KEU.bam bam (transcriptome alignments) 8.3 GB
ENCFF923KWR.tsv tsv (transcript quantifications) 25.4 MB
ENCFF939QNY.bigWig bigWig (plus strand signal of unique reads) 84.6 MB
ENCFF948TIE.bigWig bigWig (minus strand signal of unique reads) 73.0 MB
ENCFF954DBH.tsv tsv (transcript quantifications) 25.0 MB
ENCFF968MLU.bigWig bigWig (plus strand signal of unique reads) 83.2 MB
ENCFF977XLX.bigWig bigWig (minus strand signal of unique reads) 72.2 MB
ENCFF983GZI.bam bam (transcriptome alignments) 9.0 GB
ENCFF986UYH.tsv tsv (gene quantifications) 10.4 MB
ENCSR305XWT ENCSR · via encode_api

Control shRNA against no target in HepG2 cells followed by RNA-seq. (non-target-BGHLV20)

Homo sapiens

84 data files
FileTypeSize
ENCFF011ACU.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 5.2 GB
ENCFF024EGT.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF026IAZ.bam bam (alignments); assembly: hg19; genome annotation: V19 3.6 GB
ENCFF028SWQ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 70.8 MB
ENCFF038NBK.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 71.4 MB
ENCFF056AGG.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 64.9 MB
ENCFF058QDT.bam bam (alignments); assembly: hg19; genome annotation: V19 3.6 GB
ENCFF060LGB.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 79.7 MB
ENCFF067PBV.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 68.9 MB
ENCFF089QDR.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF093MYF.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 69.5 MB
ENCFF111SLI.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF121LYT.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 73.7 MB
ENCFF137REJ.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 81.9 MB
ENCFF142VXP.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.9 GB
ENCFF166ICR.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 74.0 MB
ENCFF185SFG.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 68.5 MB
ENCFF193TYD.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 5.0 GB
ENCFF197UJB.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.3 GB
ENCFF202VKF.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF213LTG.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 73.0 MB
ENCFF224RBF.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 66.6 MB
ENCFF249YFZ.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 60.9 MB
ENCFF289WRI.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.5 GB
ENCFF302FJZ.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 80.3 MB
ENCFF338IOS.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 76.4 MB
ENCFF339SEP.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 71.6 MB
ENCFF354RZQ.bam bam (alignments); assembly: hg19; genome annotation: V19 3.8 GB
ENCFF355ECV.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 71.4 MB
ENCFF364LGT.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 81.8 MB
ENCFF368NSW.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.7 GB
ENCFF378GHD.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 72.7 MB
ENCFF402IYV.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 74.2 MB
ENCFF421WCJ.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF423JPN.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 80.3 MB
ENCFF434ZIQ.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 70.0 MB
ENCFF443ZMQ.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.3 MB
ENCFF454FGT.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 81.1 MB
ENCFF460AAE.bam bam (alignments); assembly: hg19; genome annotation: V19 3.8 GB
ENCFF465PXX.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 71.5 MB
ENCFF487UNM.bam bam (alignments); assembly: hg19; genome annotation: V19 4.1 GB
ENCFF505VMT.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF553ECR.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 64.7 MB
ENCFF570CRU.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF601FUT.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 66.6 MB
ENCFF603JIF.fastq fastq (reads) 2.2 GB
ENCFF613RJJ.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 67.4 MB
ENCFF621YXW.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 71.4 MB
ENCFF622DPP.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 5.1 GB
ENCFF623SWE.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 77.6 MB
ENCFF626CBU.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF655OUK.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 66.5 MB
ENCFF663TFY.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 62.9 MB
ENCFF666OEI.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 62.8 MB
ENCFF692AXN.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 68.8 MB
ENCFF701KJC.fastq fastq (reads) 2.3 GB
ENCFF711JSH.fastq fastq (reads) 2.5 GB
ENCFF719QNW.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 67.8 MB
ENCFF733JRN.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 5.3 GB
ENCFF760KKF.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 77.7 MB
ENCFF777CYQ.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 5.8 GB
ENCFF784SML.bam bam (alignments); assembly: hg19; genome annotation: V19 4.4 GB
ENCFF797BRH.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 66.7 MB
ENCFF824ZNB.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 72.0 MB
ENCFF857QEU.bam bam (alignments); assembly: GRCh38; genome annotation: V29 4.5 GB
ENCFF857RWP.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 69.9 MB
ENCFF873MSP.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 69.0 MB
ENCFF875MLU.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.2 MB
ENCFF879LBE.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF882WYH.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 65.2 MB
ENCFF893FNC.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 5.6 GB
ENCFF894JVP.bam bam (alignments); assembly: GRCh38; genome annotation: V29 4.3 GB
ENCFF894KMS.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 70.3 MB
ENCFF905GPL.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 64.8 MB
ENCFF906EFN.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 76.2 MB
ENCFF939PSG.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF941XAQ.fastq fastq (reads) 2.3 GB
ENCFF942RUQ.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF953MQY.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 69.4 MB
ENCFF963FBS.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 73.5 MB
ENCFF977QOX.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF985IDW.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 77.5 MB
ENCFF987BOM.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 76.2 MB
ENCFF996CHU.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 71.6 MB
ENCSR929OLV ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) pulldown experiment against SRSF8

11 data files
FileTypeSize
ENCFF046HXG.fastq fastq (reads) 324.9 MB
ENCFF156GSI.tsv tsv (library fraction) 75.2 KB
ENCFF172SZM.fastq fastq (reads) 414.1 MB
ENCFF260OIA.fastq fastq (reads) 364.6 MB
ENCFF455VOQ.tsv tsv (enrichment) 208.0 KB
ENCFF504GWV.tsv tsv (enrichment) 12.5 KB
ENCFF588RIK.tsv tsv (library fraction) 17.9 KB
ENCFF625PWF.fastq fastq (reads) 300.4 MB
ENCFF746BQQ.fastq fastq (reads) 359.0 MB
ENCFF860CDY.tsv tsv (enrichment) 51.0 KB
ENCFF894LGH.tsv tsv (library fraction) 312.9 KB
ENCSR344XID ENCSR · via encode_api

Control shRNA against no target in K562 cells followed by RNA-seq. (nontarget-LV08)

Homo sapiens

84 data files
FileTypeSize
ENCFF019DPC.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 99.6 MB
ENCFF022HAM.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 79.5 MB
ENCFF022YAW.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 98.1 MB
ENCFF040THL.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 89.8 MB
ENCFF040ZLI.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF043AER.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 95.2 MB
ENCFF045MKD.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 93.6 MB
ENCFF054TNH.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF078LXU.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.6 GB
ENCFF082NLD.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 91.7 MB
ENCFF085JFF.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 84.5 MB
ENCFF089NKI.bam bam (alignments); assembly: GRCh38; genome annotation: V29 5.1 GB
ENCFF092XAP.bam bam (alignments); assembly: hg19; genome annotation: V19 3.6 GB
ENCFF096VMH.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 89.6 MB
ENCFF113QWF.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 88.2 MB
ENCFF115OOZ.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF151JFS.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 87.2 MB
ENCFF164BIU.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 4.5 GB
ENCFF183VJQ.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 5.1 GB
ENCFF192DKQ.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 84.9 MB
ENCFF199LGI.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 95.4 MB
ENCFF201SIR.bam bam (alignments); assembly: hg19; genome annotation: V19 5.0 GB
ENCFF217GRM.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.4 MB
ENCFF228RFB.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF232CRW.bam bam (alignments); assembly: hg19; genome annotation: V19 3.6 GB
ENCFF244UFC.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF250TSY.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 77.8 MB
ENCFF253KPR.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 98.1 MB
ENCFF255NCJ.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 98.5 MB
ENCFF265ZZB.bam bam (alignments); assembly: hg19; genome annotation: V19 4.2 GB
ENCFF305RZN.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF306QJE.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 5.2 GB
ENCFF311VVH.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 84.0 MB
ENCFF343FOK.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 88.7 MB
ENCFF357YDY.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 81.8 MB
ENCFF358ZNZ.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 99.6 MB
ENCFF361DGA.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 96.4 MB
ENCFF364FKK.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF365GMA.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 86.9 MB
ENCFF383SGN.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 97.3 MB
ENCFF455SNL.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 88.0 MB
ENCFF463JSS.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 97.4 MB
ENCFF471SFB.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF480UVG.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF500AGL.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF524WVY.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 107.1 MB
ENCFF570YWV.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 107.1 MB
ENCFF572MPN.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 81.1 MB
ENCFF579JAW.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 105.7 MB
ENCFF584QWR.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 108.8 MB
ENCFF585TFX.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 78.9 MB
ENCFF587PJM.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 94.5 MB
ENCFF588NPT.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 88.1 MB
ENCFF600MIF.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 97.1 MB
ENCFF615FRB.bam bam (alignments); assembly: hg19; genome annotation: V19 4.2 GB
ENCFF616HGR.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 81.9 MB
ENCFF622BQK.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 97.2 MB
ENCFF626BGO.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 84.9 MB
ENCFF640AVK.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 75.4 MB
ENCFF646AWW.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.3 MB
ENCFF651UUW.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 94.4 MB
ENCFF653WFC.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 90.4 MB
ENCFF661IQV.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 107.4 MB
ENCFF669EEP.bam bam (alignments); assembly: GRCh38; genome annotation: V24 5.1 GB
ENCFF679KGU.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 88.1 MB
ENCFF686IDF.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 6.0 GB
ENCFF686ZOZ.fastq fastq (reads) 2.7 GB
ENCFF687NLA.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.2 GB
ENCFF759IRT.fastq fastq (reads) 2.3 GB
ENCFF767NGP.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF768WCG.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.8 GB
ENCFF784ESR.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 90.8 MB
ENCFF787UKP.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 82.3 MB
ENCFF799FEY.fastq fastq (reads) 2.7 GB
ENCFF811OKU.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 108.8 MB
ENCFF812XUV.bam bam (alignments); assembly: hg19; genome annotation: V19 4.3 GB
ENCFF853DNT.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 85.6 MB
ENCFF858CWV.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 4.5 GB
ENCFF866LWU.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.5 MB
ENCFF870ZUC.bam bam (alignments); assembly: GRCh38; genome annotation: V29 4.6 GB
ENCFF893THI.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 87.2 MB
ENCFF902OBM.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 5.3 GB
ENCFF934ZAR.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 93.8 MB
ENCFF963MPW.fastq fastq (reads) 2.3 GB
ENCSR874DVZ ENCSR · via encode_api

RNA-seq on K562 cells treated with an shRNA knockdown against GLRX3. (GLRX3_BGKLV34)

Homo sapiens

92 data files
FileTypeSize
ENCFF023NCT.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF038FBZ.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.5 MB
ENCFF042ATD.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 82.0 MB
ENCFF051OJT.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 77.9 MB
ENCFF056CRJ.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 83.3 MB
ENCFF067NKD.bam bam (alignments); assembly: GRCh38; genome annotation: V29 5.0 GB
ENCFF079WQB.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 80.0 MB
ENCFF101RXW.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 96.0 MB
ENCFF105NZG.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 95.3 MB
ENCFF118XIQ.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 84.7 MB
ENCFF129VXP.bam bam (alignments); assembly: hg19; genome annotation: V19 4.7 GB
ENCFF168QRQ.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.4 MB
ENCFF173OMQ.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 82.1 MB
ENCFF184YTT.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF190EYP.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF196WLU.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 79.2 MB
ENCFF212ZQJ.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 93.8 MB
ENCFF216LRA.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF227MMZ.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 4.0 MB
ENCFF228UAF.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 77.1 MB
ENCFF229NBA.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 77.7 MB
ENCFF229NKP.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 95.2 MB
ENCFF238MUZ.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 85.9 MB
ENCFF244QYA.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.4 MB
ENCFF245PBE.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF276HUT.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.7 MB
ENCFF284MBO.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 93.5 MB
ENCFF339SOA.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 84.7 MB
ENCFF375PNP.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 84.7 MB
ENCFF378ZJA.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 15.9 MB
ENCFF379GSQ.fastq fastq (reads) 2.6 GB
ENCFF387TRG.bam bam (alignments); assembly: GRCh38; genome annotation: V24 5.0 GB
ENCFF391RGX.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 4.4 MB
ENCFF407ZEZ.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.8 GB
ENCFF414CSV.fastq fastq (reads) 2.7 GB
ENCFF417WDM.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 82.9 MB
ENCFF417WXQ.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 5.5 GB
ENCFF417XAN.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 83.9 MB
ENCFF418IMA.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 73.1 MB
ENCFF439EKB.bam bam (alignments); assembly: hg19; genome annotation: V19 4.9 GB
ENCFF448QOM.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 94.7 MB
ENCFF469RUM.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 85.7 MB
ENCFF473LAF.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 4.7 MB
ENCFF478QIQ.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 5.4 GB
ENCFF478YLJ.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.1 GB
ENCFF479GYT.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 96.2 MB
ENCFF496OIX.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 75.8 MB
ENCFF498RDE.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 71.3 MB
ENCFF507GVW.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF509HBY.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 78.7 MB
ENCFF522GKX.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 80.7 MB
ENCFF526XLX.bam bam (alignments); assembly: hg19; genome annotation: V19 3.9 GB
ENCFF533ZJH.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF563DFP.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 83.0 MB
ENCFF565QUM.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 83.3 MB
ENCFF566MJQ.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 96.2 MB
ENCFF619YLY.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 79.9 MB
ENCFF621OGS.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 6.1 GB
ENCFF624FGQ.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 83.3 MB
ENCFF633FYX.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 5.4 GB
ENCFF638YLJ.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 95.3 MB
ENCFF645JJY.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 84.6 MB
ENCFF645OJB.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 83.6 MB
ENCFF648RIV.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 95.2 MB
ENCFF664VDO.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF666VEN.fastq fastq (reads) 2.6 GB
ENCFF669HVA.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.9 GB
ENCFF688VZD.bam bam (alignments); assembly: hg19; genome annotation: V19 4.1 GB
ENCFF689LTN.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 5.6 MB
ENCFF693ENI.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 74.3 MB
ENCFF704GJB.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.0 MB
ENCFF759DCZ.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 5.4 GB
ENCFF761CQN.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 82.8 MB
ENCFF769DQQ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 76.3 MB
ENCFF783KXC.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 82.8 MB
ENCFF809FZV.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF834OTJ.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 6.2 GB
ENCFF835DGX.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 85.0 MB
ENCFF862BYB.fastq fastq (reads) 2.5 GB
ENCFF863JZM.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 84.9 MB
ENCFF871ICI.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 78.1 MB
ENCFF873PRM.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 94.4 MB
ENCFF897UTM.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 76.2 MB
ENCFF902MXK.bam bam (alignments); assembly: hg19; genome annotation: V19 3.9 GB
ENCFF942EBS.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 84.9 MB
ENCFF961KCU.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 83.7 MB
ENCFF962TKW.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.8 MB
ENCFF971GHW.bam bam (alignments); assembly: GRCh38; genome annotation: V29 4.8 GB
ENCFF976ZUF.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF994XQD.bam bam (alignments); assembly: hg19; genome annotation: V19 4.1 GB
ENCFF995JMG.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF996ATO.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 96.0 MB
ENCSR048BWH ENCSR · via encode_api

RNA-seq on K562 cells treated with an shRNA knockdown against HNRNPA1. (HNRNPA1_BGKLV21-B)

Homo sapiens

92 data files
FileTypeSize
ENCFF015PIM.fastq fastq (reads) 2.1 GB
ENCFF031MZA.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 101.6 MB
ENCFF033BYF.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.7 GB
ENCFF035ABY.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.7 MB
ENCFF035TEK.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 98.1 MB
ENCFF042IYS.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 88.8 MB
ENCFF070ZTT.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.4 MB
ENCFF085XAE.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 84.8 MB
ENCFF114HON.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 81.5 MB
ENCFF130JLY.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 85.3 MB
ENCFF130YGS.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF132TJO.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 88.2 MB
ENCFF142NTX.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 83.6 MB
ENCFF154NMI.bam bam (alignments); assembly: GRCh38; genome annotation: V24 2.9 GB
ENCFF167OCW.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.0 GB
ENCFF177CJU.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 4.4 GB
ENCFF191VLS.bam bam (alignments); assembly: hg19; genome annotation: V19 3.1 GB
ENCFF203UTM.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 82.8 MB
ENCFF210OYV.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF213COD.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.4 MB
ENCFF239OGJ.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.5 MB
ENCFF242NXX.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF244AJP.bam bam (alignments); assembly: hg19; genome annotation: V19 3.1 GB
ENCFF249JMN.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 5.6 GB
ENCFF253EBY.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 90.4 MB
ENCFF258VNP.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 4.7 MB
ENCFF277LDM.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 98.1 MB
ENCFF289FQB.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 86.3 MB
ENCFF303QZW.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 78.2 MB
ENCFF304EBE.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 4.8 GB
ENCFF332QYC.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 100.5 MB
ENCFF333VNG.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 97.1 MB
ENCFF334EGN.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 87.5 MB
ENCFF344WWQ.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 88.6 MB
ENCFF358ZTE.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 88.0 MB
ENCFF364WMW.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF395AZN.bam bam (alignments); assembly: hg19; genome annotation: V19 2.8 GB
ENCFF398HLD.bam bam (alignments); assembly: hg19; genome annotation: V19 3.5 GB
ENCFF414BHG.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.9 MB
ENCFF435KAR.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 76.3 MB
ENCFF447RXL.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 4.4 MB
ENCFF459AYH.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 91.9 MB
ENCFF488SKB.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 83.8 MB
ENCFF492FVK.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 83.2 MB
ENCFF496BBZ.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 97.9 MB
ENCFF498RVE.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 85.7 MB
ENCFF512KPP.bam bam (alignments); assembly: GRCh38; genome annotation: V29 3.7 GB
ENCFF520IPH.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 88.9 MB
ENCFF533KGF.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 90.9 MB
ENCFF540QSJ.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 5.6 MB
ENCFF575EGY.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF586TCG.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 90.5 MB
ENCFF587KMS.bam bam (alignments); assembly: GRCh38; genome annotation: V29 4.0 GB
ENCFF606MNK.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 85.7 MB
ENCFF607KKJ.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 96.9 MB
ENCFF611DVB.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 93.4 MB
ENCFF611RFN.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 3.9 MB
ENCFF661EVY.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 87.0 MB
ENCFF693BLE.bam bam (alignments); assembly: hg19; genome annotation: V19 2.8 GB
ENCFF693BLK.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.9 MB
ENCFF699HPM.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 4.9 GB
ENCFF711RAQ.fastq fastq (reads) 2.0 GB
ENCFF713RWO.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 80.1 MB
ENCFF715SRR.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 81.8 MB
ENCFF716AUE.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 100.9 MB
ENCFF725WIK.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 87.0 MB
ENCFF733NQV.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF738LPL.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 16.7 MB
ENCFF751JET.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 101.6 MB
ENCFF790QVN.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 4.5 GB
ENCFF808GCZ.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 88.5 MB
ENCFF817OCS.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 90.8 MB
ENCFF818HGM.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF829UJA.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 86.4 MB
ENCFF859JEW.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF860QDY.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 88.3 MB
ENCFF864FLD.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF866NEP.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 100.5 MB
ENCFF879LRP.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF889OON.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 89.5 MB
ENCFF892ONO.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF893RDF.fastq fastq (reads) 1.9 GB
ENCFF909SCU.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 84.4 MB
ENCFF923RBC.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 99.8 MB
ENCFF933GDS.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 82.2 MB
ENCFF943AHU.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 90.0 MB
ENCFF943CBB.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 88.4 MB
ENCFF967CMR.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 5.1 GB
ENCFF977BRY.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.2 GB
ENCFF979PHM.bam bam (alignments); assembly: hg19; genome annotation: V19 3.8 GB
ENCFF986SQY.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 97.1 MB
ENCFF997NCB.fastq fastq (reads) 2.2 GB
ENCSR544CTM ENCSR · via encode_api

eCLIP control experiment on HepG2 against TRA2A

Homo sapiens

8 data files
FileTypeSize
ENCFF084UZN.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 9.0 MB
ENCFF411KJR.fastq fastq (reads) 204.3 MB
ENCFF413FAM.bam bam (alignments); assembly: hg19 173.4 MB
ENCFF457YDW.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 9.0 MB
ENCFF541PUE.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 8.9 MB
ENCFF655QGU.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 9.1 MB
ENCFF867ISO.bam bam (alignments); assembly: GRCh38 174.2 MB
ENCFF976JEU.fastq fastq (reads) 211.3 MB
ENCSR341PZW ENCSR · via encode_api

RNA-seq on K562 cells treated with an shRNA knockdown against WDR43. (WDR43_BGKLV34)

Homo sapiens

92 data files
FileTypeSize
ENCFF008UMY.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 83.5 MB
ENCFF010PRA.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 79.8 MB
ENCFF036KMK.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 102.3 MB
ENCFF047KHQ.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.6 GB
ENCFF050PXP.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 86.2 MB
ENCFF066QND.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF075QNL.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF134YAC.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 103.5 MB
ENCFF141NGN.bam bam (alignments); assembly: hg19; genome annotation: V19 4.5 GB
ENCFF142DIR.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.6 MB
ENCFF145CVK.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 89.5 MB
ENCFF150IIL.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 83.0 MB
ENCFF156EER.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 80.5 MB
ENCFF159EYG.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 92.8 MB
ENCFF178JKO.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 90.7 MB
ENCFF189YUV.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 87.9 MB
ENCFF193PXW.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 87.4 MB
ENCFF197MIJ.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 88.6 MB
ENCFF208SEB.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 5.0 MB
ENCFF209MHY.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 6.2 GB
ENCFF214FLR.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 16.4 MB
ENCFF215TTI.bam bam (alignments); assembly: hg19; genome annotation: V19 4.5 GB
ENCFF222HFH.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 89.2 MB
ENCFF250DCF.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.5 MB
ENCFF262IPT.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 99.3 MB
ENCFF264QYH.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 104.6 MB
ENCFF277EQW.bam bam (alignments); assembly: GRCh38; genome annotation: V29 5.6 GB
ENCFF309SNF.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 91.7 MB
ENCFF382IDP.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 103.5 MB
ENCFF390TAJ.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.4 MB
ENCFF411CFG.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 86.5 MB
ENCFF416MHI.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF423TCH.fastq fastq (reads) 3.0 GB
ENCFF426GWJ.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF430THL.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 6.4 GB
ENCFF431NPI.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 104.6 MB
ENCFF438LWB.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF441QBT.bam bam (alignments); assembly: GRCh38; genome annotation: V29 5.6 GB
ENCFF461BBN.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 84.7 MB
ENCFF481LZH.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 98.1 MB
ENCFF501EZQ.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 103.5 MB
ENCFF503FNM.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 85.8 MB
ENCFF505QPQ.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 84.1 MB
ENCFF508RPC.fastq fastq (reads) 3.0 GB
ENCFF509COT.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 7.4 GB
ENCFF541HCJ.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 91.5 MB
ENCFF541TWX.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 100.5 MB
ENCFF552YVN.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 94.3 MB
ENCFF555GLH.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 6.5 GB
ENCFF559TZM.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF560OEN.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 81.0 MB
ENCFF565DPS.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 90.8 MB
ENCFF580NDY.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 86.9 MB
ENCFF590DNE.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 99.4 MB
ENCFF594THM.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF596LIF.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.0 MB
ENCFF599IUI.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.7 MB
ENCFF604ZCA.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.5 MB
ENCFF605UTR.bam bam (alignments); assembly: hg19; genome annotation: V19 5.5 GB
ENCFF639VBQ.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 4.4 MB
ENCFF642MAP.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 4.2 MB
ENCFF642PNV.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 82.1 MB
ENCFF647CGG.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 88.7 MB
ENCFF655ZTK.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 77.7 MB
ENCFF657IWC.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.4 MB
ENCFF690WHX.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 84.3 MB
ENCFF715AXB.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 81.4 MB
ENCFF745XYI.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 93.0 MB
ENCFF747AZZ.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 90.6 MB
ENCFF752MBC.bam bam (alignments); assembly: GRCh38; genome annotation: V24 5.6 GB
ENCFF770CEF.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.6 GB
ENCFF770NWX.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 90.0 MB
ENCFF784AIU.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 86.7 MB
ENCFF792JJE.bam bam (alignments); assembly: hg19; genome annotation: V19 4.6 GB
ENCFF799ITP.bam bam (alignments); assembly: hg19; genome annotation: V19 5.5 GB
ENCFF814SAO.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 5.6 MB
ENCFF818UJS.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 7.1 GB
ENCFF836KMN.fastq fastq (reads) 3.1 GB
ENCFF876NAI.bam bam (alignments); assembly: GRCh38; genome annotation: V24 5.6 GB
ENCFF880SFD.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 6.3 GB
ENCFF882YFB.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 90.6 MB
ENCFF890BPR.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 93.5 MB
ENCFF900UYE.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 100.4 MB
ENCFF906OJA.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 87.6 MB
ENCFF917FOP.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 99.4 MB
ENCFF928NGM.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF941ZTP.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF957RLT.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 92.7 MB
ENCFF973JAQ.fastq fastq (reads) 2.9 GB
ENCFF979KKR.bam bam (alignments); assembly: hg19; genome annotation: V19 4.6 GB
ENCFF991IXS.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF995KHV.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 89.6 MB
ENCSR269SJB ENCSR · via encode_api

RNA-seq on HepG2 cells treated with an shRNA knockdown against CKAP4. (CKAP4_BGHLV31)

Homo sapiens

92 data files
FileTypeSize
ENCFF021CPN.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 88.2 MB
ENCFF025GOU.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 91.1 MB
ENCFF032YHW.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 4.6 MB
ENCFF043OEB.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 93.6 MB
ENCFF043TEG.fastq fastq (reads) 2.3 GB
ENCFF044HJR.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 90.5 MB
ENCFF052DDR.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.4 MB
ENCFF078BJS.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 5.2 GB
ENCFF124VHP.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 98.3 MB
ENCFF125CTV.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 91.0 MB
ENCFF140CVY.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF166BWS.bam bam (alignments); assembly: hg19; genome annotation: V19 3.2 GB
ENCFF171LXH.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 3.0 MB
ENCFF182ZRE.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 99.5 MB
ENCFF195MXX.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 99.0 MB
ENCFF200VYJ.fastq fastq (reads) 2.3 GB
ENCFF215GNR.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.1 GB
ENCFF216MUR.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 87.6 MB
ENCFF219MPL.bam bam (alignments); assembly: hg19; genome annotation: V19 3.2 GB
ENCFF235ZWS.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 88.2 MB
ENCFF237WLH.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 92.8 MB
ENCFF245OPM.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 91.7 MB
ENCFF257KPE.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF267PJY.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 86.9 MB
ENCFF270OGR.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 84.5 MB
ENCFF274EDD.fastq fastq (reads) 2.3 GB
ENCFF286VCJ.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF294HIB.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 5.2 GB
ENCFF322LIQ.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.0 MB
ENCFF328LEZ.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.3 GB
ENCFF348ABY.bam bam (alignments); assembly: hg19; genome annotation: V19 3.9 GB
ENCFF367NCV.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.0 GB
ENCFF376VPP.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 97.9 MB
ENCFF377JVY.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 4.4 MB
ENCFF391YOL.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 88.6 MB
ENCFF408TLV.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 89.2 MB
ENCFF419SDY.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 89.0 MB
ENCFF431YDJ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 86.0 MB
ENCFF438XKF.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 85.5 MB
ENCFF472WZR.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 5.6 MB
ENCFF474IBM.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF478IBZ.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 80.6 MB
ENCFF491UDZ.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 99.9 MB
ENCFF529KQP.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 87.8 MB
ENCFF540GPL.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 91.0 MB
ENCFF541UJB.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF546RXP.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 89.3 MB
ENCFF575NRN.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 83.9 MB
ENCFF592OCH.bam bam (alignments); assembly: hg19; genome annotation: V19 3.1 GB
ENCFF621ETM.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 6.0 GB
ENCFF634TLP.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 91.0 MB
ENCFF641TBZ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 82.6 MB
ENCFF642SNC.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 90.5 MB
ENCFF650OOP.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 5.3 GB
ENCFF678SFU.bam bam (alignments); assembly: GRCh38; genome annotation: V29 4.1 GB
ENCFF683QYN.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.8 MB
ENCFF705WTQ.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 100.8 MB
ENCFF712IPB.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 17.0 MB
ENCFF733SBA.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 5.2 GB
ENCFF733UQY.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF738PZJ.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.4 MB
ENCFF744MNB.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 80.2 MB
ENCFF747CFJ.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 6.0 GB
ENCFF757OJK.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF762AUY.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 100.8 MB
ENCFF765PYL.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 97.8 MB
ENCFF770GIB.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF803ILA.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 87.5 MB
ENCFF804ZDY.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 98.9 MB
ENCFF816CUH.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF817NTM.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.5 MB
ENCFF820OEN.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 83.5 MB
ENCFF846OKE.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.2 GB
ENCFF855TVS.bam bam (alignments); assembly: hg19; genome annotation: V19 3.9 GB
ENCFF860SKR.bam bam (alignments); assembly: hg19; genome annotation: V19 3.1 GB
ENCFF879XIS.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 83.8 MB
ENCFF880TUO.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 99.5 MB
ENCFF885IRZ.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 88.6 MB
ENCFF895SQI.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 90.0 MB
ENCFF902FBI.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 90.7 MB
ENCFF911OQR.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 3.7 MB
ENCFF915KRE.fastq fastq (reads) 2.3 GB
ENCFF916DEX.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 88.6 MB
ENCFF923LNM.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF927FUA.bam bam (alignments); assembly: GRCh38; genome annotation: V29 4.0 GB
ENCFF930FDC.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 91.0 MB
ENCFF948MIQ.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 99.6 MB
ENCFF950SRK.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 83.1 MB
ENCFF960DHG.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 86.0 MB
ENCFF982IQR.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF982PKH.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 89.7 MB
ENCFF995WAT.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 98.1 MB
ENCSR788YGG ENCSR · via encode_api

RNA-seq on K562 cells treated with an shRNA knockdown against RPS3A. (RPS3A_BGKLV24_B)

Homo sapiens

92 data files
FileTypeSize
ENCFF020CCG.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 112.2 MB
ENCFF024BZP.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 113.9 MB
ENCFF026MMD.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 90.9 MB
ENCFF046TBG.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 89.7 MB
ENCFF048UWF.fastq fastq (reads) 4.3 GB
ENCFF053ZWU.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 97.4 MB
ENCFF054YKQ.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 112.6 MB
ENCFF061QRM.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 25.0 MB
ENCFF078JCX.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 91.4 MB
ENCFF105OYN.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 82.1 MB
ENCFF112QBQ.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 25.0 MB
ENCFF121GLS.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 77.4 MB
ENCFF121NAV.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.8 MB
ENCFF126OCL.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 97.5 MB
ENCFF133BHX.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.4 MB
ENCFF148LZA.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 89.1 MB
ENCFF184SAY.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 101.9 MB
ENCFF202XRE.bam bam (alignments); assembly: GRCh38; genome annotation: V24 6.3 GB
ENCFF205JCN.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 88.5 MB
ENCFF207ZCU.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF217IRG.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 6.4 GB
ENCFF217JGG.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF233VFT.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.9 MB
ENCFF263EGQ.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 96.7 MB
ENCFF263IIV.bam bam (alignments); assembly: hg19; genome annotation: V19 4.7 GB
ENCFF264RAY.bam bam (alignments); assembly: hg19; genome annotation: V19 6.3 GB
ENCFF265RHF.bam bam (alignments); assembly: hg19; genome annotation: V19 5.6 GB
ENCFF275OBF.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 99.7 MB
ENCFF276GNG.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 87.7 MB
ENCFF278TYJ.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.4 MB
ENCFF280BWJ.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 86.6 MB
ENCFF290HLN.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 113.9 MB
ENCFF304AGQ.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 5.6 MB
ENCFF311QNC.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 97.8 MB
ENCFF325RHQ.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 83.1 MB
ENCFF366CVH.bam bam (alignments); assembly: hg19; genome annotation: V19 4.7 GB
ENCFF387IVK.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 100.8 MB
ENCFF391UIO.fastq fastq (reads) 4.2 GB
ENCFF392HZK.bam bam (alignments); assembly: GRCh38; genome annotation: V24 7.6 GB
ENCFF396VQN.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 112.5 MB
ENCFF401TSK.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 84.1 MB
ENCFF403EAC.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 7.2 GB
ENCFF416JJE.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.5 MB
ENCFF418OYQ.bam bam (alignments); assembly: GRCh38; genome annotation: V29 5.7 GB
ENCFF442TIU.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 100.3 MB
ENCFF449DLA.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 97.8 MB
ENCFF449HAZ.bam bam (alignments); assembly: GRCh38; genome annotation: V24 5.7 GB
ENCFF450GWK.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 89.6 MB
ENCFF451VJH.bam bam (alignments); assembly: hg19; genome annotation: V19 6.3 GB
ENCFF471IPK.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 3.7 MB
ENCFF490LNO.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF520WWK.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 81.4 MB
ENCFF531BVH.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 8.3 GB
ENCFF545SDK.bam bam (alignments); assembly: GRCh38; genome annotation: V29 7.6 GB
ENCFF547GZK.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 95.1 MB
ENCFF567LFD.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 87.2 MB
ENCFF584LPT.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 110.8 MB
ENCFF597JWS.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 92.2 MB
ENCFF617XQP.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.0 MB
ENCFF645OMI.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 6.4 GB
ENCFF648NJT.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 9.4 GB
ENCFF658MUT.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.4 MB
ENCFF662VES.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 93.2 MB
ENCFF664XXC.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 84.0 MB
ENCFF669IVD.fastq fastq (reads) 3.1 GB
ENCFF673DDW.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 90.3 MB
ENCFF681ZLA.bam bam (alignments); assembly: hg19; genome annotation: V19 7.5 GB
ENCFF690PGU.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.8 MB
ENCFF690VVS.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 79.4 MB
ENCFF698EFB.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 15.9 MB
ENCFF709PXP.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 98.0 MB
ENCFF756NGA.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 99.0 MB
ENCFF765XYJ.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.9 MB
ENCFF771JAO.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 99.8 MB
ENCFF774CGM.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.4 MB
ENCFF779CHA.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 100.3 MB
ENCFF794TWN.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 85.5 MB
ENCFF813TZK.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 100.8 MB
ENCFF818EQQ.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 87.4 MB
ENCFF824ZNX.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.7 GB
ENCFF860OJH.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 98.8 MB
ENCFF860WJD.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 89.9 MB
ENCFF862TBQ.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.5 MB
ENCFF871PMT.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 99.7 MB
ENCFF874GFE.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF882JPH.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 4.5 MB
ENCFF891YUE.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 8.2 GB
ENCFF898NNY.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 87.6 MB
ENCFF936LFG.fastq fastq (reads) 3.2 GB
ENCFF946GDZ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 88.9 MB
ENCFF947ZUW.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 99.8 MB
ENCFF979JJU.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 4.3 MB
ENCSR770OWW ENCSR · via encode_api

RNA-seq on K562 cells treated with an shRNA knockdown against LARP7. (LARP7_BGKLV21)

Homo sapiens

92 data files
FileTypeSize
ENCFF008NNA.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 70.5 MB
ENCFF026HCN.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 73.6 MB
ENCFF034KRU.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 66.7 MB
ENCFF056JBK.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.3 MB
ENCFF068QMB.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 73.8 MB
ENCFF069HEQ.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF073HLZ.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 65.0 MB
ENCFF090RFI.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.1 GB
ENCFF101TYB.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF106PEC.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 66.9 MB
ENCFF121NYE.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.3 GB
ENCFF122QHJ.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF128LPX.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 72.1 MB
ENCFF139REL.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF173TWZ.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 79.6 MB
ENCFF177ZHW.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.7 MB
ENCFF180DTK.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.5 MB
ENCFF180YNA.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF185JZT.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.8 MB
ENCFF202DDK.fastq fastq (reads) 2.4 GB
ENCFF225DFF.fastq fastq (reads) 2.3 GB
ENCFF233GFO.fastq fastq (reads) 2.1 GB
ENCFF233RYY.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 4.4 GB
ENCFF238MCA.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 62.7 MB
ENCFF248PPG.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.3 MB
ENCFF249GUT.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 69.6 MB
ENCFF252IHT.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 78.3 MB
ENCFF255HOL.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 57.6 MB
ENCFF281LBT.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF293FJE.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 79.3 MB
ENCFF309YVG.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 68.2 MB
ENCFF328EZV.bam bam (alignments); assembly: hg19; genome annotation: V19 3.6 GB
ENCFF330TDS.bam bam (alignments); assembly: hg19; genome annotation: V19 4.3 GB
ENCFF357BGK.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 5.8 GB
ENCFF362JXT.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 72.5 MB
ENCFF392BKD.bam bam (alignments); assembly: hg19; genome annotation: V19 3.1 GB
ENCFF399WMI.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 64.6 MB
ENCFF415PQG.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 66.7 MB
ENCFF418YDL.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 62.7 MB
ENCFF420YMA.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 71.4 MB
ENCFF428TVQ.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 69.3 MB
ENCFF431XCE.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 79.3 MB
ENCFF434DWX.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 74.7 MB
ENCFF440CKC.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 64.8 MB
ENCFF449GOA.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 64.7 MB
ENCFF465CQC.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 4.9 GB
ENCFF481IOW.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 66.1 MB
ENCFF494KWH.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 5.2 GB
ENCFF498ACT.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.9 MB
ENCFF500MVK.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF501PSF.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF509VVD.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 71.0 MB
ENCFF525GJL.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 80.5 MB
ENCFF533WGG.bam bam (alignments); assembly: GRCh38; genome annotation: V29 3.7 GB
ENCFF535NOZ.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 4.4 GB
ENCFF537EQH.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 65.8 MB
ENCFF551WFG.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 61.1 MB
ENCFF558WTK.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.7 GB
ENCFF558YCU.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF616HGG.bam bam (alignments); assembly: hg19; genome annotation: V19 3.7 GB
ENCFF633IHO.bam bam (alignments); assembly: GRCh38; genome annotation: V29 4.3 GB
ENCFF664DJA.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.6 GB
ENCFF669OGA.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 66.0 MB
ENCFF671GCS.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 80.5 MB
ENCFF686LFF.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF696GMW.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF698SWE.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 4.2 MB
ENCFF712YXU.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 68.0 MB
ENCFF717PTW.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 5.5 MB
ENCFF732ENI.fastq fastq (reads) 1.9 GB
ENCFF736TRG.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 73.7 MB
ENCFF740AJJ.bam bam (alignments); assembly: hg19; genome annotation: V19 3.6 GB
ENCFF742USS.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 71.6 MB
ENCFF747MXB.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 73.6 MB
ENCFF767ZFD.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 66.8 MB
ENCFF770AVM.bam bam (alignments); assembly: hg19; genome annotation: V19 3.1 GB
ENCFF801NZM.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 5.1 GB
ENCFF808YMZ.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 72.0 MB
ENCFF810ZCM.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 64.3 MB
ENCFF841GLQ.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 63.0 MB
ENCFF860OQP.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 69.1 MB
ENCFF861LWH.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 63.0 MB
ENCFF871BNL.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 70.1 MB
ENCFF876PYP.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 14.6 MB
ENCFF886HMT.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 74.7 MB
ENCFF892FAY.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 67.6 MB
ENCFF911WUB.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 64.9 MB
ENCFF924LZP.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 3.9 MB
ENCFF950ESA.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 66.7 MB
ENCFF957ZRI.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 3.4 MB
ENCFF972FVW.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 59.6 MB
ENCFF977MRB.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 61.2 MB
ENCSR042QTH ENCSR · via encode_api

Control shRNA against no target in HepG2 cells followed by RNA-seq. (non-target-BGHLV23)

Homo sapiens

84 data files
FileTypeSize
ENCFF003YAZ.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 105.7 MB
ENCFF043YRO.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 80.5 MB
ENCFF057NIJ.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 67.1 MB
ENCFF059LWK.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.2 GB
ENCFF077JPK.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 72.3 MB
ENCFF114UPP.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 98.1 MB
ENCFF116VJO.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF119ZRD.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.3 MB
ENCFF152ABJ.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 72.0 MB
ENCFF185PWO.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 79.1 MB
ENCFF198ZSR.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 70.8 MB
ENCFF199SQY.bam bam (alignments); assembly: hg19; genome annotation: V19 8.6 GB
ENCFF228KND.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF230SYA.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 72.2 MB
ENCFF230THW.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 105.8 MB
ENCFF240FAX.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 72.1 MB
ENCFF243BIU.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 70.0 MB
ENCFF253UCF.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 6.9 GB
ENCFF261JHH.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 79.0 MB
ENCFF270NCD.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 107.8 MB
ENCFF296GQY.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.4 MB
ENCFF309FMB.bam bam (alignments); assembly: GRCh38; genome annotation: V29 4.9 GB
ENCFF318KZS.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 99.5 MB
ENCFF327SDI.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 13.9 GB
ENCFF329SQX.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF350VVR.bam bam (alignments); assembly: hg19; genome annotation: V19 4.0 GB
ENCFF360EFX.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 102.6 MB
ENCFF371TBZ.bam bam (alignments); assembly: GRCh38; genome annotation: V24 10.4 GB
ENCFF375QXP.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 70.3 MB
ENCFF394YXV.bam bam (alignments); assembly: hg19; genome annotation: V19 4.7 GB
ENCFF398YUO.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF399RNY.fastq fastq (reads) 5.6 GB
ENCFF403KGR.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.9 GB
ENCFF404PBF.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 106.3 MB
ENCFF420URE.fastq fastq (reads) 2.6 GB
ENCFF425AOR.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 70.4 MB
ENCFF437SMU.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 109.3 MB
ENCFF444SWK.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 116.6 MB
ENCFF448TCG.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF460OLM.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 65.5 MB
ENCFF498HJO.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 100.9 MB
ENCFF500GGU.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 66.5 MB
ENCFF502KQN.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 72.4 MB
ENCFF524PFB.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 118.6 MB
ENCFF533OCH.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 12.4 GB
ENCFF546VNH.fastq fastq (reads) 2.7 GB
ENCFF550IJR.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.9 MB
ENCFF566IXO.bam bam (alignments); assembly: hg19; genome annotation: V19 9.9 GB
ENCFF568XAG.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 118.5 MB
ENCFF579PTP.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 71.1 MB
ENCFF580MAS.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 107.5 MB
ENCFF604CBP.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 120.8 MB
ENCFF632WVK.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 120.7 MB
ENCFF657KMW.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF682CVA.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 109.4 MB
ENCFF725QVJ.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 103.5 MB
ENCFF726AVT.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF737FXG.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 73.7 MB
ENCFF761NDQ.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 25.0 MB
ENCFF766TFZ.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 72.7 MB
ENCFF789BWG.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 99.5 MB
ENCFF796NNR.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 80.5 MB
ENCFF807KGN.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 6.1 GB
ENCFF816VFT.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 77.8 MB
ENCFF819IDL.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.5 MB
ENCFF819ILY.bam bam (alignments); assembly: GRCh38; genome annotation: V29 10.4 GB
ENCFF829TUN.bam bam (alignments); assembly: hg19; genome annotation: V19 8.6 GB
ENCFF840VNE.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 106.4 MB
ENCFF846CIF.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.5 MB
ENCFF847XYG.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 6.1 GB
ENCFF850YAC.bam bam (alignments); assembly: hg19; genome annotation: V19 4.0 GB
ENCFF856VPW.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 109.1 MB
ENCFF866CFM.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 118.6 MB
ENCFF874TVY.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 68.9 MB
ENCFF876RRW.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 67.5 MB
ENCFF893IYL.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.5 MB
ENCFF939ZUK.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 12.5 GB
ENCFF947FVE.bam bam (alignments); assembly: GRCh38; genome annotation: V24 8.8 GB
ENCFF964LLJ.fastq fastq (reads) 5.4 GB
ENCFF965BWR.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 109.8 MB
ENCFF966PCG.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 106.1 MB
ENCFF967FRS.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 102.4 MB
ENCFF970QCT.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 79.1 MB
ENCFF991QZA.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 68.5 MB
ENCSR259BLT ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) mock pulldown control experiment of RBM23

1 data file
FileTypeSize
ENCFF621AFM.fastq fastq (reads) 353.2 MB
ENCSR775PWD ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) input control experiment of RBM23

1 data file
FileTypeSize
ENCFF314LQZ.fastq fastq (reads) 394.7 MB
ENCSR497LIF ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) pulldown experiment against BOLL

13 data files
FileTypeSize
ENCFF025KXN.fastq fastq (reads) 204.5 MB
ENCFF305QDN.fastq fastq (reads) 638.6 MB
ENCFF307TCN.tsv tsv (library fraction) 264.7 KB
ENCFF471GJF.fastq fastq (reads) 551.4 MB
ENCFF523UNS.tsv tsv (enrichment) 688.1 KB
ENCFF532IGX.tsv tsv (library fraction) 15.6 KB
ENCFF641YYU.tsv tsv (library fraction) 64.6 KB
ENCFF697NMB.tsv tsv (enrichment) 10.0 KB
ENCFF717ZBX.tsv tsv (enrichment) 41.0 KB
ENCFF835OYI.tsv tsv (enrichment) 168.0 KB
ENCFF939KQG.fastq fastq (reads) 678.5 MB
ENCFF954BBZ.fastq fastq (reads) 605.8 MB
ENCFF980KRL.tsv tsv (library fraction) 1.1 MB
ENCSR154OBA ENCSR · via encode_api

Control shRNA against no target in K562 cells followed by RNA-seq. (NT_BGKLV24C)

Homo sapiens

84 data files
FileTypeSize
ENCFF015YBX.bigWig bigWig (plus strand signal of all reads) 81.8 MB
ENCFF017BAU.tsv tsv (transcript quantifications) 29.9 MB
ENCFF044BTK.fastq fastq (reads) 4.7 GB
ENCFF060FFC.bigWig bigWig (plus strand signal of unique reads) 89.3 MB
ENCFF086TFB.bigWig bigWig (plus strand signal of unique reads) 109.5 MB
ENCFF095HPS.bigWig bigWig (minus strand signal of all reads) 124.6 MB
ENCFF106IIP.tsv tsv (gene quantifications) 9.1 MB
ENCFF113SCU.bam bam (transcriptome alignments) 7.1 GB
ENCFF119AVL.bigWig bigWig (minus strand signal of unique reads) 106.9 MB
ENCFF138BHH.bam bam (alignments) 6.6 GB
ENCFF156APM.bigWig bigWig (plus strand signal of all reads) 100.0 MB
ENCFF160LXS.bigWig bigWig (plus strand signal of unique reads) 72.3 MB
ENCFF192WNC.bam bam (alignments) 9.0 GB
ENCFF204TYO.bigWig bigWig (minus strand signal of all reads) 95.9 MB
ENCFF230OGW.tsv tsv (gene quantifications) 9.1 MB
ENCFF257KBA.bam bam (alignments) 7.5 GB
ENCFF279RET.bam bam (alignments) 6.6 GB
ENCFF285UPJ.bigWig bigWig (plus strand signal of all reads) 101.5 MB
ENCFF329FYE.bam bam (transcriptome alignments) 10.1 GB
ENCFF347FXW.tsv tsv (transcript quantifications) 24.9 MB
ENCFF356CGR.fastq fastq (reads) 3.4 GB
ENCFF361MJT.bigWig bigWig (plus strand signal of unique reads) 109.1 MB
ENCFF372UCQ.bigWig bigWig (minus strand signal of all reads) 80.5 MB
ENCFF373OUI.bam bam (alignments) 5.4 GB
ENCFF387HXU.tsv tsv (transcript quantifications) 27.5 MB
ENCFF388JGC.bigWig bigWig (plus strand signal of all reads) 101.1 MB
ENCFF390KQG.bigWig bigWig (plus strand signal of all reads) 78.8 MB
ENCFF391SKG.bigWig bigWig (plus strand signal of unique reads) 110.2 MB
ENCFF393VIU.bam bam (transcriptome alignments) 6.4 GB
ENCFF405QDC.tsv tsv (transcript quantifications) 29.8 MB
ENCFF413FBM.bam bam (transcriptome alignments) 8.9 GB
ENCFF425HSW.bam bam (alignments) 7.5 GB
ENCFF440NWW.bigWig bigWig (minus strand signal of all reads) 98.9 MB
ENCFF468LML.bigWig bigWig (minus strand signal of all reads) 80.3 MB
ENCFF475XIZ.tsv tsv (gene quantifications) 9.5 MB
ENCFF477AAA.bigWig bigWig (plus strand signal of all reads) 100.8 MB
ENCFF504QJV.bigWig bigWig (plus strand signal of all reads) 81.3 MB
ENCFF510VMI.bigWig bigWig (plus strand signal of unique reads) 89.4 MB
ENCFF514HZA.bigWig bigWig (minus strand signal of all reads) 77.4 MB
ENCFF515NLM.bam bam (transcriptome alignments) 9.0 GB
ENCFF532RZM.bigWig bigWig (minus strand signal of all reads) 124.6 MB
ENCFF544GUZ.bigWig bigWig (minus strand signal of unique reads) 107.9 MB
ENCFF546CWI.bam bam (alignments) 6.4 GB
ENCFF550BDH.bam bam (alignments) 9.2 GB
ENCFF557RBI.tsv tsv (gene quantifications) 9.5 MB
ENCFF558ZSG.bigWig bigWig (minus strand signal of unique reads) 92.5 MB
ENCFF562JPY.bigWig bigWig (plus strand signal of unique reads) 91.0 MB
ENCFF567VGS.bigWig bigWig (minus strand signal of unique reads) 74.7 MB
ENCFF583INI.bam bam (alignments) 5.4 GB
ENCFF588YPC.tsv tsv (transcript quantifications) 27.4 MB
ENCFF596VQV.bigWig bigWig (minus strand signal of all reads) 99.8 MB
ENCFF620MUR.tsv tsv (transcript quantifications) 24.9 MB
ENCFF626VCB.bigWig bigWig (plus strand signal of all reads) 97.5 MB
ENCFF630TCO.bigWig bigWig (minus strand signal of all reads) 99.7 MB
ENCFF638XQR.bigWig bigWig (minus strand signal of unique reads) 87.5 MB
ENCFF653RDM.bigWig bigWig (minus strand signal of unique reads) 70.4 MB
ENCFF665INT.bigWig bigWig (plus strand signal of unique reads) 89.4 MB
ENCFF671TJP.bigWig bigWig (plus strand signal of all reads) 125.9 MB
ENCFF682HPI.bigWig bigWig (minus strand signal of all reads) 121.0 MB
ENCFF696FXZ.tsv tsv (gene quantifications) 10.4 MB
ENCFF707PEE.bigWig bigWig (minus strand signal of unique reads) 87.3 MB
ENCFF708ZJB.bigWig bigWig (minus strand signal of unique reads) 88.4 MB
ENCFF712JWK.bigWig bigWig (minus strand signal of unique reads) 74.2 MB
ENCFF729BSF.bigWig bigWig (plus strand signal of unique reads) 75.9 MB
ENCFF740GEF.tsv tsv (transcript quantifications) 25.4 MB
ENCFF745RMA.tsv tsv (transcript quantifications) 25.3 MB
ENCFF771ILG.bigWig bigWig (minus strand signal of unique reads) 92.1 MB
ENCFF795TRD.bigWig bigWig (plus strand signal of all reads) 125.8 MB
ENCFF826RCR.fastq fastq (reads) 3.3 GB
ENCFF851NRU.bigWig bigWig (minus strand signal of all reads) 99.8 MB
ENCFF858LNX.bigWig bigWig (plus strand signal of all reads) 100.8 MB
ENCFF892LPN.bigWig bigWig (plus strand signal of unique reads) 76.7 MB
ENCFF902DRO.bigWig bigWig (plus strand signal of unique reads) 94.6 MB
ENCFF902TTV.bam bam (alignments) 7.5 GB
ENCFF921TCU.bam bam (alignments) 5.4 GB
ENCFF940ZTM.bam bam (transcriptome alignments) 6.3 GB
ENCFF945LKB.bigWig bigWig (plus strand signal of unique reads) 94.5 MB
ENCFF945UOV.bigWig bigWig (minus strand signal of unique reads) 106.8 MB
ENCFF947OCE.bigWig bigWig (plus strand signal of all reads) 122.3 MB
ENCFF958CDC.fastq fastq (reads) 4.7 GB
ENCFF962SFQ.bam bam (alignments) 9.2 GB
ENCFF965NBD.bigWig bigWig (minus strand signal of all reads) 99.8 MB
ENCFF971NKR.tsv tsv (gene quantifications) 10.4 MB
ENCFF986NPM.bigWig bigWig (minus strand signal of unique reads) 87.5 MB
ENCSR205HMN ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) pulldown experiment against ZCRB1

13 data files
FileTypeSize
ENCFF113HZK.tsv tsv (enrichment) 41.0 KB
ENCFF121DTB.tsv tsv (enrichment) 168.0 KB
ENCFF231GAA.tsv tsv (library fraction) 64.1 KB
ENCFF241MOO.tsv tsv (enrichment) 688.0 KB
ENCFF381OHL.tsv tsv (library fraction) 15.3 KB
ENCFF449IAQ.fastq fastq (reads) 375.5 MB
ENCFF512GKK.tsv tsv (library fraction) 1.1 MB
ENCFF526DSN.fastq fastq (reads) 402.0 MB
ENCFF577HCJ.tsv tsv (enrichment) 10.0 KB
ENCFF678GKT.fastq fastq (reads) 358.1 MB
ENCFF758ORV.fastq fastq (reads) 203.2 MB
ENCFF862JMB.fastq fastq (reads) 274.5 MB
ENCFF920HNU.tsv tsv (library fraction) 265.1 KB
ENCSR660MZN ENCSR · via encode_api

RNA-seq on HepG2 cells treated with an shRNA knockdown against HNRNPD. (HNRNPD-BGHLV22)

Homo sapiens

92 data files
FileTypeSize
ENCFF003PZJ.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF008BDI.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 67.3 MB
ENCFF021TSB.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 68.3 MB
ENCFF027KSG.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.0 GB
ENCFF053TTB.fastq fastq (reads) 2.1 GB
ENCFF056QFQ.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF074UEX.fastq fastq (reads) 2.0 GB
ENCFF085OET.bam bam (alignments); assembly: hg19; genome annotation: V19 3.9 GB
ENCFF092WKY.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 4.8 GB
ENCFF098KGO.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 65.6 MB
ENCFF100XDS.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 3.0 MB
ENCFF109ZCS.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 69.4 MB
ENCFF114YWK.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 5.4 GB
ENCFF118QAG.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 69.6 MB
ENCFF163PNX.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 60.7 MB
ENCFF171QSK.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.3 MB
ENCFF183GBH.bam bam (alignments); assembly: hg19; genome annotation: V19 3.3 GB
ENCFF192YLB.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 70.9 MB
ENCFF194YIB.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 67.0 MB
ENCFF217OSI.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF220YGD.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF223RXN.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 65.8 MB
ENCFF226TNJ.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 70.4 MB
ENCFF229CQJ.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.7 MB
ENCFF229DYN.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 4.9 GB
ENCFF253LCJ.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 74.5 MB
ENCFF254NUC.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.9 MB
ENCFF255SSG.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 66.2 MB
ENCFF257OXO.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 5.5 GB
ENCFF260ENR.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.4 GB
ENCFF269TJS.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 15.2 MB
ENCFF305RAA.fastq fastq (reads) 2.2 GB
ENCFF326BYM.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 63.5 MB
ENCFF326PCA.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 4.2 MB
ENCFF331RPQ.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 66.5 MB
ENCFF332GDA.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 76.3 MB
ENCFF332YPH.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 73.9 MB
ENCFF335QIB.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 69.4 MB
ENCFF337KKD.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 68.1 MB
ENCFF346SOZ.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF355UYM.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 65.4 MB
ENCFF362RDG.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 65.3 MB
ENCFF371LFC.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF388USI.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.8 MB
ENCFF392AEI.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 68.3 MB
ENCFF407SSY.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 63.9 MB
ENCFF414VWW.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 72.0 MB
ENCFF420YOG.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 62.6 MB
ENCFF434TZC.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 73.9 MB
ENCFF439UWD.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 64.2 MB
ENCFF449RHA.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 4.8 GB
ENCFF456ZAU.bam bam (alignments); assembly: hg19; genome annotation: V19 3.4 GB
ENCFF462NIH.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF466VTO.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF467BUV.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 67.7 MB
ENCFF481KXZ.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 75.5 MB
ENCFF482YEW.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 77.9 MB
ENCFF486YPX.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 73.6 MB
ENCFF503FBA.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 68.1 MB
ENCFF514BAQ.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 68.4 MB
ENCFF549PGZ.bam bam (alignments); assembly: hg19; genome annotation: V19 3.4 GB
ENCFF559HIK.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 66.8 MB
ENCFF573ROV.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.3 MB
ENCFF579TWP.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 77.0 MB
ENCFF616QND.bam bam (alignments); assembly: hg19; genome annotation: V19 3.3 GB
ENCFF648ZTI.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF655CQI.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF656TFD.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 62.2 MB
ENCFF676XAP.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 70.2 MB
ENCFF725NFN.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 77.9 MB
ENCFF726PZS.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 3.6 MB
ENCFF738KSK.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 77.0 MB
ENCFF769PCX.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 69.4 MB
ENCFF779JUK.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF782ERZ.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 68.8 MB
ENCFF802WRI.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.0 GB
ENCFF804NBZ.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 5.6 MB
ENCFF808BNB.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 70.8 MB
ENCFF809PNG.bam bam (alignments); assembly: GRCh38; genome annotation: V29 4.0 GB
ENCFF812ZYW.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 66.9 MB
ENCFF825QPC.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 67.0 MB
ENCFF830SPJ.bam bam (alignments); assembly: hg19; genome annotation: V19 3.8 GB
ENCFF831OKB.bam bam (alignments); assembly: GRCh38; genome annotation: V29 4.0 GB
ENCFF832HNM.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.4 GB
ENCFF847KPO.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 68.3 MB
ENCFF860YQI.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 64.8 MB
ENCFF872FCJ.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 74.8 MB
ENCFF880WOS.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 4.9 GB
ENCFF887IKS.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 74.9 MB
ENCFF946NJM.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF997GUU.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 69.7 MB
ENCFF997QSH.fastq fastq (reads) 2.2 GB
ENCSR915CDT ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) pulldown experiment against HNRNPCL1

14 data files
FileTypeSize
ENCFF015VSF.tsv tsv (enrichment) 41.0 KB
ENCFF063VPS.tsv tsv (library fraction) 265.7 KB
ENCFF072KMO.tsv tsv (enrichment) 319.0 B
ENCFF150PUV.fastq fastq (reads) 467.2 MB
ENCFF171EIR.tsv tsv (library fraction) 1.1 MB
ENCFF316GAF.fastq fastq (reads) 436.9 MB
ENCFF442IBY.fastq fastq (reads) 518.0 MB
ENCFF576WAA.tsv tsv (enrichment) 168.0 KB
ENCFF729PSS.fastq fastq (reads) 587.0 MB
ENCFF732SOC.tsv tsv (enrichment) 688.1 KB
ENCFF749DDH.tsv tsv (enrichment) 10.0 KB
ENCFF820QTJ.tsv tsv (library fraction) 63.7 KB
ENCFF869NLN.tsv tsv (library fraction) 15.1 KB
ENCFF963SCO.fastq fastq (reads) 643.1 MB
ENCSR449VKY ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) pulldown experiment against DAZ3

16 data files
FileTypeSize
ENCFF167KBI.tsv tsv (enrichment) 41.0 KB
ENCFF182ZXE.fastq fastq (reads) 696.8 MB
ENCFF363SSD.tsv tsv (library fraction) 1.1 MB
ENCFF463SEP.fastq fastq (reads) 495.7 MB
ENCFF576NTR.tsv tsv (enrichment) 10.0 KB
ENCFF610RRA.tsv tsv (enrichment) 237.0 B
ENCFF620GLE.tsv tsv (enrichment) 214.0 B
ENCFF633VVB.fastq fastq (reads) 486.8 MB
ENCFF662VJZ.tsv tsv (enrichment) 688.0 KB
ENCFF690SCB.tsv tsv (enrichment) 168.0 KB
ENCFF756JHY.fastq fastq (reads) 457.0 MB
ENCFF783PQH.tsv tsv (library fraction) 64.2 KB
ENCFF803JOU.tsv tsv (library fraction) 264.7 KB
ENCFF853YFD.tsv tsv (library fraction) 15.4 KB
ENCFF881QIB.tsv tsv (enrichment) 323.0 B
ENCFF921PCX.fastq fastq (reads) 474.0 MB
ENCSR546MBH ENCSR · via encode_api

shRNA knockdown against EIF2S1 in K562 cells followed by RNA-seq. (EIF2S1-LV08)

Homo sapiens

92 data files
FileTypeSize
ENCFF017QBY.bam bam (transcriptome alignments) 5.9 GB
ENCFF029IFE.tsv tsv (gene quantifications) 10.4 MB
ENCFF042JFD.tsv tsv (transcript quantifications) 27.4 MB
ENCFF060WZB.bigWig bigWig (minus strand signal of all reads) 101.3 MB
ENCFF064SEH.bam bam (alignments) 3.9 GB
ENCFF067ZVF.bigWig bigWig (minus strand signal of unique reads) 82.1 MB
ENCFF069ECU.bigWig bigWig (minus strand signal of all reads) 82.1 MB
ENCFF071ACA.bam bam (alignments) 4.9 GB
ENCFF073AWQ.bigWig bigWig (plus strand signal of all reads) 100.5 MB
ENCFF074KQD.tsv tsv (gene quantifications) 9.1 MB
ENCFF082NUZ.bigWig bigWig (plus strand signal of unique reads) 90.8 MB
ENCFF087QDS.bigWig bigWig (minus strand signal of unique reads) 82.5 MB
ENCFF088KZD.bam bam (alignments) 4.7 GB
ENCFF102GZP.bigWig bigWig (plus strand signal of all reads) 102.7 MB
ENCFF116LEI.bigWig bigWig (minus strand signal of unique reads) 75.8 MB
ENCFF121QSW.bigWig bigWig (minus strand signal of unique reads) 70.5 MB
ENCFF121ZAU.bam bam (alignments) 4.4 GB
ENCFF128GYM.bam bam (transcriptome alignments) 5.1 GB
ENCFF175GPY.bigWig bigWig (minus strand signal of all reads) 79.2 MB
ENCFF200UWT.tsv tsv (transcript quantifications) 27.4 MB
ENCFF208EHD.bigWig bigWig (plus strand signal of all reads) 93.8 MB
ENCFF221ADX.bam bam (transcriptome alignments) 5.0 GB
ENCFF226VXY.bigWig bigWig (plus strand signal of unique reads) 84.9 MB
ENCFF237IRB.bigWig bigWig (plus strand signal of unique reads) 77.6 MB
ENCFF237LGJ.bigWig bigWig (plus strand signal of unique reads) 84.3 MB
ENCFF238CLE.bigWig bigWig (plus strand signal of all reads) 95.3 MB
ENCFF259VZP.bam bam (transcriptome alignments) 5.7 GB
ENCFF270QUF.bigWig bigWig (plus strand signal of unique reads) 83.5 MB
ENCFF279VDY.bigWig bigWig (plus strand signal of unique reads) 84.2 MB
ENCFF287BYU.tsv tsv (gene quantifications) 9.5 MB
ENCFF296SOK.tsv tsv (transcript quantifications) 24.9 MB
ENCFF308QLD.bam bam (alignments) 5.2 GB
ENCFF309ERQ.tar tar (differential splicing quantifications) 3.9 MB
ENCFF334AUL.tsv tsv (transcript quantifications) 29.8 MB
ENCFF337ZID.tsv tsv (differential expression quantifications) 5.4 MB
ENCFF345BNB.bam bam (alignments) 4.9 GB
ENCFF351ALQ.tsv tsv (transcript quantifications) 24.9 MB
ENCFF369SSX.bigWig bigWig (minus strand signal of unique reads) 82.0 MB
ENCFF391POU.bigWig bigWig (minus strand signal of unique reads) 88.4 MB
ENCFF420RSL.bigWig bigWig (minus strand signal of unique reads) 88.0 MB
ENCFF437XYF.tar tar (differential splicing quantifications) 3.4 MB
ENCFF444SWH.bam bam (alignments) 3.9 GB
ENCFF458QTX.bigWig bigWig (plus strand signal of unique reads) 81.2 MB
ENCFF468NUA.bigWig bigWig (minus strand signal of unique reads) 82.0 MB
ENCFF469MJY.tar tar (differential splicing quantifications) 16.5 MB
ENCFF469MYY.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF488QSM.bigWig bigWig (plus strand signal of all reads) 102.7 MB
ENCFF497FNQ.bigWig bigWig (minus strand signal of unique reads) 81.4 MB
ENCFF551IXO.bigWig bigWig (minus strand signal of all reads) 94.1 MB
ENCFF575RMG.bigWig bigWig (plus strand signal of unique reads) 84.1 MB
ENCFF579ILK.bigWig bigWig (minus strand signal of all reads) 86.4 MB
ENCFF627VBI.bigWig bigWig (minus strand signal of unique reads) 78.8 MB
ENCFF629RBE.bigWig bigWig (plus strand signal of all reads) 89.6 MB
ENCFF631ABE.bigWig bigWig (minus strand signal of all reads) 101.3 MB
ENCFF644ESW.tsv tsv (gene quantifications) 10.4 MB
ENCFF658LZH.bigWig bigWig (plus strand signal of unique reads) 90.3 MB
ENCFF694XSD.tsv tsv (gene quantifications) 9.1 MB
ENCFF700DVW.bigWig bigWig (plus strand signal of all reads) 84.1 MB
ENCFF705COG.tsv tsv (transcript quantifications) 25.3 MB
ENCFF709UGC.bam bam (alignments) 4.4 GB
ENCFF721DJW.bam bam (alignments) 5.7 GB
ENCFF734FKJ.bigWig bigWig (minus strand signal of unique reads) 88.5 MB
ENCFF742NJU.bigWig bigWig (plus strand signal of all reads) 80.6 MB
ENCFF745JHN.bigWig bigWig (plus strand signal of all reads) 83.2 MB
ENCFF755PSA.bam bam (alignments) 5.7 GB
ENCFF758KRK.bam bam (transcriptome alignments) 6.6 GB
ENCFF773IFH.bigWig bigWig (minus strand signal of all reads) 90.2 MB
ENCFF782ACV.bigWig bigWig (minus strand signal of unique reads) 75.1 MB
ENCFF783IAV.bigWig bigWig (minus strand signal of all reads) 99.1 MB
ENCFF787GPF.fastq fastq (reads) 2.4 GB
ENCFF791RRB.bigWig bigWig (minus strand signal of all reads) 88.2 MB
ENCFF799IGA.bigWig bigWig (minus strand signal of all reads) 92.6 MB
ENCFF831LVB.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF854NGS.tsv tsv (transcript quantifications) 25.3 MB
ENCFF877MGC.bigWig bigWig (minus strand signal of all reads) 94.1 MB
ENCFF878BQL.bigWig bigWig (plus strand signal of unique reads) 77.2 MB
ENCFF907EOW.bigWig bigWig (minus strand signal of all reads) 82.5 MB
ENCFF909WRQ.bigWig bigWig (plus strand signal of all reads) 92.0 MB
ENCFF912PRH.bam bam (alignments) 4.6 GB
ENCFF932SQO.tsv tsv (gene quantifications) 9.5 MB
ENCFF937IMC.bigWig bigWig (plus strand signal of unique reads) 90.9 MB
ENCFF945DFM.bam bam (alignments) 4.0 GB
ENCFF948JBB.fastq fastq (reads) 2.5 GB
ENCFF950LTI.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF954YFW.bigWig bigWig (plus strand signal of all reads) 88.0 MB
ENCFF959ABX.tsv tsv (transcript quantifications) 29.8 MB
ENCFF963SKW.bigWig bigWig (plus strand signal of unique reads) 72.6 MB
ENCFF977EHR.bigWig bigWig (plus strand signal of all reads) 95.3 MB
ENCFF978TSB.tsv tsv (differential expression quantifications) 4.2 MB
ENCFF988DMQ.fastq fastq (reads) 2.8 GB
ENCFF990RVT.fastq fastq (reads) 2.8 GB
ENCFF994QMB.bam bam (transcriptome alignments) 5.8 GB
ENCSR693HGG ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) mock pulldown control experiment of SRSF8

1 data file
FileTypeSize
ENCFF975GRN.fastq fastq (reads) 304.7 MB
ENCSR161TFX ENCSR · via encode_api

eCLIP control experiment on HepG2 against UCHL5

Homo sapiens

8 data files
FileTypeSize
ENCFF097ZFW.bigWig bigWig (minus strand signal of unique reads) 12.4 MB
ENCFF111HFT.bigWig bigWig (minus strand signal of unique reads) 12.1 MB
ENCFF136NDS.bigWig bigWig (plus strand signal of unique reads) 12.3 MB
ENCFF151VWF.bam bam (alignments) 247.0 MB
ENCFF196BNM.fastq fastq (reads) 327.8 MB
ENCFF269WBT.fastq fastq (reads) 313.4 MB
ENCFF352SQG.bam bam (alignments) 241.2 MB
ENCFF471HMV.bigWig bigWig (plus strand signal of unique reads) 12.7 MB
ENCSR947OIM ENCSR · via encode_api

shRNA knockdown against RBM22 in K562 cells followed by RNA-seq. (RBM22-LV11)

Homo sapiens

92 data files
FileTypeSize
ENCFF003XHC.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 96.8 MB
ENCFF005ZZJ.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 95.1 MB
ENCFF008LPH.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 128.8 MB
ENCFF016WOB.bam bam (alignments); assembly: hg19; genome annotation: V19 3.2 GB
ENCFF017ZGN.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.8 MB
ENCFF032HRO.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.1 GB
ENCFF036HBQ.fastq fastq (reads) 2.1 GB
ENCFF054YQC.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 4.0 GB
ENCFF056IGA.bam bam (alignments); assembly: GRCh38; genome annotation: V29 4.3 GB
ENCFF062FPH.fastq fastq (reads) 2.0 GB
ENCFF073NLP.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 118.4 MB
ENCFF078EDN.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 119.0 MB
ENCFF086IGQ.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 15.6 MB
ENCFF096HAE.bam bam (alignments); assembly: GRCh38; genome annotation: V29 4.1 GB
ENCFF096OZW.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 4.7 GB
ENCFF102AJE.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF115WRA.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 113.1 MB
ENCFF153QJK.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 133.0 MB
ENCFF157SQP.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.1 GB
ENCFF159PZC.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 116.0 MB
ENCFF171MHF.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.9 MB
ENCFF181FAS.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 115.0 MB
ENCFF188ZRM.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 4.4 MB
ENCFF207WTW.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 5.4 MB
ENCFF210USC.bam bam (alignments); assembly: hg19; genome annotation: V19 4.1 GB
ENCFF252BMJ.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 115.3 MB
ENCFF258VIT.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 106.5 MB
ENCFF262EMA.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 103.3 MB
ENCFF262IKR.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 104.9 MB
ENCFF270KZT.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 100.5 MB
ENCFF272RMC.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF299FGZ.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF317DGF.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 115.8 MB
ENCFF317IPL.bam bam (alignments); assembly: hg19; genome annotation: V19 3.2 GB
ENCFF328OSZ.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 108.3 MB
ENCFF349MKR.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 4.6 MB
ENCFF371RVQ.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 131.3 MB
ENCFF394BYI.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 3.8 GB
ENCFF403SQS.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 130.4 MB
ENCFF405CMD.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF418GVM.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 105.2 MB
ENCFF446AWL.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.7 MB
ENCFF461GWH.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 119.7 MB
ENCFF464ELK.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 129.1 MB
ENCFF466HKE.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF481YTU.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 132.9 MB
ENCFF486SZU.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 114.5 MB
ENCFF489FHD.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 104.9 MB
ENCFF496FRF.fastq fastq (reads) 2.1 GB
ENCFF503CRY.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 113.8 MB
ENCFF505LQD.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 111.3 MB
ENCFF512SXV.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.3 GB
ENCFF515IVH.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 114.9 MB
ENCFF518SBR.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 107.0 MB
ENCFF535LRB.bam bam (alignments); assembly: hg19; genome annotation: V19 3.1 GB
ENCFF554QYS.bam bam (alignments); assembly: hg19; genome annotation: V19 3.0 GB
ENCFF565LSV.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.5 MB
ENCFF589MCF.fastq fastq (reads) 2.2 GB
ENCFF590YKL.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 119.9 MB
ENCFF592TBO.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 107.4 MB
ENCFF608MDL.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 113.6 MB
ENCFF625TOB.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF626TWG.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF638PGY.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 117.7 MB
ENCFF650PCK.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 130.6 MB
ENCFF661IAN.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 113.2 MB
ENCFF668DEX.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF698POK.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.9 MB
ENCFF708ABO.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 4.0 MB
ENCFF719VAK.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.8 MB
ENCFF727IUV.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 101.8 MB
ENCFF776AHQ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 98.6 MB
ENCFF777TQF.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 104.8 MB
ENCFF786LIJ.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 131.5 MB
ENCFF788VJY.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 3.9 GB
ENCFF796AHJ.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 4.6 GB
ENCFF827FIF.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 130.5 MB
ENCFF827ZQK.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.5 MB
ENCFF845IYH.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 115.8 MB
ENCFF856EUQ.bam bam (alignments); assembly: hg19; genome annotation: V19 3.9 GB
ENCFF877WTO.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.3 GB
ENCFF909YJG.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 115.1 MB
ENCFF914VZH.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 131.5 MB
ENCFF916JLW.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 129.0 MB
ENCFF925SCQ.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF928PPO.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF939RZL.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 119.0 MB
ENCFF947RPV.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 4.0 GB
ENCFF964BXN.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 132.9 MB
ENCFF969KZS.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 103.9 MB
ENCFF981XEQ.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 117.8 MB
ENCFF994TOF.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 108.6 MB
ENCSR697KPL ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) input control experiment of IGF2BP2

1 data file
FileTypeSize
ENCFF917XEN.fastq fastq (reads) 316.5 MB
ENCSR454EFP ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) input control experiment of PTBP1/PTB3

1 data file
FileTypeSize
ENCFF002BYQ.fastq fastq (reads) 1.3 GB
ENCSR828NSY ENCSR · via encode_api

eCLIP control experiment on K562 against DROSHA

Homo sapiens

8 data files
FileTypeSize
ENCFF004HVL.fastq fastq (reads) 1011.6 MB
ENCFF017ANQ.bigWig bigWig (plus strand signal of unique reads) 47.5 MB
ENCFF018AVT.fastq fastq (reads) 1.0 GB
ENCFF059NAB.bam bam (alignments) 1.1 GB
ENCFF586XSP.bigWig bigWig (plus strand signal of unique reads) 49.4 MB
ENCFF826DXS.bam bam (alignments) 1.1 GB
ENCFF849CSH.bigWig bigWig (minus strand signal of unique reads) 46.2 MB
ENCFF928XCJ.bigWig bigWig (minus strand signal of unique reads) 48.0 MB
ENCSR491FOC ENCSR · via encode_api

Control shRNA against no target in HepG2 cells followed by RNA-seq. (NT BGHLV14)

Homo sapiens

84 data files
FileTypeSize
ENCFF014IUX.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF037ASF.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 75.6 MB
ENCFF043ORB.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF052HMZ.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 82.4 MB
ENCFF055FJV.bam bam (alignments); assembly: GRCh38; genome annotation: V29 4.8 GB
ENCFF070TIJ.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 89.6 MB
ENCFF081AXP.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 74.2 MB
ENCFF113FNR.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 76.2 MB
ENCFF116XAD.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 81.1 MB
ENCFF130UGZ.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF202ZWS.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.3 GB
ENCFF212CNS.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 74.5 MB
ENCFF214VXM.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 72.6 MB
ENCFF226MEB.bam bam (alignments); assembly: hg19; genome annotation: V19 4.2 GB
ENCFF230NJB.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 89.5 MB
ENCFF243JZQ.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF247HEG.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 73.3 MB
ENCFF275LLA.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF276KEO.fastq fastq (reads) 2.4 GB
ENCFF276OXW.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 74.2 MB
ENCFF281HVL.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 77.0 MB
ENCFF289VVH.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 82.7 MB
ENCFF293OMT.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 81.6 MB
ENCFF324KUX.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 81.2 MB
ENCFF326XKY.bam bam (alignments); assembly: hg19; genome annotation: V19 3.6 GB
ENCFF331XDZ.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 82.6 MB
ENCFF356LJP.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 5.4 GB
ENCFF364EEO.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF372GSN.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF377BVQ.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 70.8 MB
ENCFF400OGS.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 75.9 MB
ENCFF401EQV.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 81.1 MB
ENCFF412VND.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF426JWN.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 84.1 MB
ENCFF444SIU.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 74.1 MB
ENCFF479XMX.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF484VKL.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 76.1 MB
ENCFF492EZP.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.0 GB
ENCFF499UUZ.bam bam (alignments); assembly: hg19; genome annotation: V19 4.0 GB
ENCFF514VBO.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 88.2 MB
ENCFF518SUL.fastq fastq (reads) 2.6 GB
ENCFF524BKX.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 71.3 MB
ENCFF532UAO.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 79.3 MB
ENCFF540RMO.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 84.1 MB
ENCFF543KNI.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 82.9 MB
ENCFF566QZD.bam bam (alignments); assembly: GRCh38; genome annotation: V29 4.3 GB
ENCFF584JJZ.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 72.2 MB
ENCFF609XZN.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 76.9 MB
ENCFF613HFA.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 69.7 MB
ENCFF632HIH.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 5.9 GB
ENCFF644KMQ.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 84.0 MB
ENCFF657HOL.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.3 MB
ENCFF661OJA.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 77.8 MB
ENCFF678MSC.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 76.2 MB
ENCFF681IRI.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 5.4 GB
ENCFF692BTC.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 79.1 MB
ENCFF699GOP.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF701CUI.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 76.0 MB
ENCFF722SHN.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 6.7 GB
ENCFF728VOU.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 6.0 GB
ENCFF773QGS.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 78.6 MB
ENCFF788MDH.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 6.1 GB
ENCFF788TPF.bam bam (alignments); assembly: hg19; genome annotation: V19 4.7 GB
ENCFF793KSC.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF803IXT.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF813XBJ.fastq fastq (reads) 2.4 GB
ENCFF818EIR.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 89.5 MB
ENCFF836RFD.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 88.2 MB
ENCFF859HXK.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 79.1 MB
ENCFF866KCW.fastq fastq (reads) 2.7 GB
ENCFF869HCH.bam bam (alignments); assembly: hg19; genome annotation: V19 3.6 GB
ENCFF890FPU.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 72.3 MB
ENCFF898XVT.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 73.8 MB
ENCFF903GPN.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 77.9 MB
ENCFF913NFP.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 81.5 MB
ENCFF915BOJ.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 79.5 MB
ENCFF915DSC.bam bam (alignments); assembly: hg19; genome annotation: V19 4.0 GB
ENCFF926LSF.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 77.9 MB
ENCFF946RUQ.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 88.4 MB
ENCFF958NOA.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.8 GB
ENCFF970AGP.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 82.6 MB
ENCFF970TMY.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.6 GB
ENCFF990PQM.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.3 MB
ENCFF999AOQ.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 67.5 MB
ENCSR006OEQ ENCSR · via encode_api

eCLIP experiment on K562 against FAM120A

Homo sapiens

35 data files
FileTypeSize
ENCFF016RWW.bed bed (peaks); assembly: GRCh38 1.6 MB
ENCFF080JDD.bed bed (peaks); assembly: hg19 668.6 KB
ENCFF086NQQ.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 20.9 MB
ENCFF094VBR.fastq fastq (reads) 355.0 MB
ENCFF116XFB.bigBed bigBed (peaks); assembly: GRCh38 3.0 MB
ENCFF144SGR.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 12.0 MB
ENCFF150KMB.bed bed (peaks); assembly: hg19 913.1 KB
ENCFF158AOV.bed bed (peaks); assembly: GRCh38 135.6 KB
ENCFF161DFB.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 20.1 MB
ENCFF170VKG.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 11.7 MB
ENCFF184QYU.bam bam (alignments); assembly: GRCh38 170.9 MB
ENCFF188HFB.bed bed (peaks); assembly: GRCh38 946.1 KB
ENCFF220URC.bigBed bigBed (peaks); assembly: hg19 1.8 MB
ENCFF225RJI.bam bam (alignments); assembly: hg19 166.7 MB
ENCFF248TVU.bigBed bigBed (peaks); assembly: GRCh38 671.6 KB
ENCFF274QOR.bed bed (peaks); assembly: GRCh38 391.4 KB
ENCFF316AVY.bed bed (peaks); assembly: GRCh38 287.3 KB
ENCFF318HXI.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 11.4 MB
ENCFF352HXC.fastq fastq (reads) 318.7 MB
ENCFF353KNB.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 20.0 MB
ENCFF368MXJ.bed bed (peaks); assembly: hg19 131.6 KB
ENCFF379MQJ.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 12.2 MB
ENCFF453EIG.bigBed bigBed (peaks); assembly: hg19 3.1 MB
ENCFF493YGV.bed bed (peaks); assembly: hg19 940.1 KB
ENCFF499ZKI.bam bam (alignments); assembly: GRCh38 388.3 MB
ENCFF611WPA.bigBed bigBed (peaks); assembly: hg19 2.1 MB
ENCFF668AFD.bam bam (alignments); assembly: hg19 391.9 MB
ENCFF820TME.fastq fastq (reads) 418.9 MB
ENCFF874PCG.fastq fastq (reads) 374.3 MB
ENCFF900RQG.bigBed bigBed (peaks); assembly: hg19 1.3 MB
ENCFF901AAL.bed bed (peaks); assembly: hg19 1.6 MB
ENCFF905XHS.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 21.1 MB
ENCFF973OEK.bigBed bigBed (peaks); assembly: hg19 3.0 MB
ENCFF976BSP.bigBed bigBed (peaks); assembly: GRCh38 963.9 KB
ENCFF984DLZ.bigBed bigBed (peaks); assembly: GRCh38 1.9 MB
ENCSR135VMS ENCSR · via encode_api

eCLIP experiment on HepG2 against LSM11

Homo sapiens

36 data files
FileTypeSize
ENCFF004CIG.fastq fastq (reads) 579.8 MB
ENCFF005DOM.bigWig bigWig (minus strand signal of unique reads) 27.2 MB
ENCFF042LCL.bed bed (peaks) 356.4 KB
ENCFF055MTP.bam bam (alignments) 393.0 MB
ENCFF066ALT.bigBed bigBed (peaks) 3.7 MB
ENCFF078QXW.bigBed bigBed (peaks) 2.0 MB
ENCFF082LOD.bigWig bigWig (plus strand signal of unique reads) 27.4 MB
ENCFF082MII.bigWig bigWig (minus strand signal of unique reads) 18.4 MB
ENCFF088YQX.bigWig bigWig (plus strand signal of unique reads) 20.0 MB
ENCFF117KLF.bigBed bigBed (peaks) 4.8 MB
ENCFF220ECM.bed bed (peaks) 2.5 MB
ENCFF229GCX.bam bam (alignments) 626.7 MB
ENCFF252SPM.bam bam (alignments) 605.0 MB
ENCFF280DYY.bigBed bigBed (peaks) 1.8 MB
ENCFF291ZAB.bigBed bigBed (peaks) 3.7 MB
ENCFF294QOA.bigBed bigBed (peaks) 814.2 KB
ENCFF307ODB.bigBed bigBed (peaks) 3.7 MB
ENCFF322HSE.bigWig bigWig (minus strand signal of unique reads) 19.0 MB
ENCFF407UHQ.fastq fastq (reads) 657.3 MB
ENCFF443NQT.bam bam (alignments) 411.0 MB
ENCFF453KFP.fastq fastq (reads) 689.6 MB
ENCFF482BDD.bed bed (peaks) 915.8 KB
ENCFF485KSY.bed bed (peaks) 295.4 KB
ENCFF549LQW.bigBed bigBed (peaks) 3.0 MB
ENCFF581BHC.bed bed (peaks) 1.8 MB
ENCFF625DWV.bigBed bigBed (peaks) 4.8 MB
ENCFF637JMJ.bed bed (peaks) 55.1 KB
ENCFF754DEC.fastq fastq (reads) 613.1 MB
ENCFF782KQY.bigWig bigWig (plus strand signal of unique reads) 28.4 MB
ENCFF814SQP.bigWig bigWig (plus strand signal of unique reads) 19.2 MB
ENCFF815COD.bigWig bigWig (minus strand signal of unique reads) 26.5 MB
ENCFF825AVT.bed bed (peaks) 2.5 MB
ENCFF870HZF.bed bed (peaks) 1.9 MB
ENCFF922GMC.bed bed (peaks) 1.0 MB
ENCFF948HKJ.bigBed bigBed (peaks) 734.8 KB
ENCFF985ECA.bed bed (peaks) 55.6 KB
ENCSR570CWH ENCSR · via encode_api

shRNA knockdown against BCCIP in HepG2 cells followed by RNA-seq. (BCCIP_BGHLV17)

Homo sapiens

92 data files
FileTypeSize
ENCFF003ASU.bigWig bigWig (plus strand signal of all reads) 80.4 MB
ENCFF022PCS.bam bam (alignments) 4.5 GB
ENCFF039OMZ.bigWig bigWig (plus strand signal of unique reads) 81.3 MB
ENCFF080GIP.bam bam (transcriptome alignments) 6.5 GB
ENCFF085YWZ.bam bam (alignments) 5.3 GB
ENCFF088EAE.bigWig bigWig (minus strand signal of all reads) 90.1 MB
ENCFF091VPZ.tsv tsv (transcript quantifications) 24.9 MB
ENCFF109RQY.bigWig bigWig (plus strand signal of all reads) 89.0 MB
ENCFF113KAH.bigWig bigWig (plus strand signal of all reads) 92.0 MB
ENCFF117EGN.tsv tsv (gene quantifications) 10.4 MB
ENCFF120PMQ.bigWig bigWig (minus strand signal of unique reads) 76.6 MB
ENCFF125LTE.bigWig bigWig (minus strand signal of unique reads) 79.2 MB
ENCFF135KIN.fastq fastq (reads) 2.9 GB
ENCFF137MJY.bam bam (transcriptome alignments) 7.4 GB
ENCFF149TID.bam bam (transcriptome alignments) 6.9 GB
ENCFF150XKC.tsv tsv (transcript quantifications) 27.4 MB
ENCFF153WPO.bigWig bigWig (minus strand signal of unique reads) 81.1 MB
ENCFF157TBE.bigWig bigWig (plus strand signal of unique reads) 77.6 MB
ENCFF161BSO.tsv tsv (transcript quantifications) 29.8 MB
ENCFF163XUG.bam bam (alignments) 4.3 GB
ENCFF169VUD.bigWig bigWig (plus strand signal of unique reads) 75.8 MB
ENCFF185RVD.bigWig bigWig (minus strand signal of unique reads) 73.4 MB
ENCFF199ICI.bigWig bigWig (plus strand signal of unique reads) 84.0 MB
ENCFF217TJJ.bigWig bigWig (plus strand signal of unique reads) 82.1 MB
ENCFF225QRN.fastq fastq (reads) 2.9 GB
ENCFF242ZTF.bam bam (alignments) 5.4 GB
ENCFF261FNP.bigWig bigWig (plus strand signal of all reads) 83.0 MB
ENCFF263PPT.bigWig bigWig (plus strand signal of all reads) 90.0 MB
ENCFF270GIH.bigWig bigWig (plus strand signal of all reads) 91.8 MB
ENCFF272CGQ.bigWig bigWig (minus strand signal of all reads) 87.4 MB
ENCFF277TYQ.bigWig bigWig (minus strand signal of all reads) 88.2 MB
ENCFF280VZD.tsv tsv (gene quantifications) 10.4 MB
ENCFF286PPU.bigWig bigWig (minus strand signal of all reads) 81.1 MB
ENCFF286WDW.bigWig bigWig (minus strand signal of all reads) 82.7 MB
ENCFF291SQT.fastq fastq (reads) 3.0 GB
ENCFF309CXB.tsv tsv (transcript quantifications) 25.3 MB
ENCFF311BCU.tsv tsv (gene quantifications) 9.1 MB
ENCFF319KWQ.bigWig bigWig (minus strand signal of all reads) 88.2 MB
ENCFF320YSW.bam bam (transcriptome alignments) 6.8 GB
ENCFF321YTF.bigWig bigWig (minus strand signal of all reads) 81.1 MB
ENCFF328OGC.bigWig bigWig (minus strand signal of all reads) 90.1 MB
ENCFF337VEW.bam bam (alignments) 4.5 GB
ENCFF341LSM.tsv tsv (transcript quantifications) 25.3 MB
ENCFF358TEY.bigWig bigWig (plus strand signal of all reads) 90.0 MB
ENCFF405IVI.bigWig bigWig (plus strand signal of unique reads) 80.1 MB
ENCFF426CCB.fastq fastq (reads) 2.8 GB
ENCFF429RBV.bigWig bigWig (minus strand signal of unique reads) 77.8 MB
ENCFF458HLU.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF483XNS.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF513VLN.bigWig bigWig (minus strand signal of unique reads) 81.6 MB
ENCFF530AXR.bigWig bigWig (plus strand signal of all reads) 84.6 MB
ENCFF568ZEX.bam bam (alignments) 4.5 GB
ENCFF576DKL.bam bam (alignments) 4.3 GB
ENCFF577KDZ.tsv tsv (gene quantifications) 9.4 MB
ENCFF591YPP.bigWig bigWig (plus strand signal of unique reads) 77.5 MB
ENCFF596JEB.bam bam (alignments) 4.3 GB
ENCFF602SMI.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF638IIZ.tar tar (differential splicing quantifications) 16.4 MB
ENCFF661QEP.tsv tsv (transcript quantifications) 27.4 MB
ENCFF662ZZI.bam bam (transcriptome alignments) 6.6 GB
ENCFF664UZI.bigWig bigWig (minus strand signal of all reads) 78.6 MB
ENCFF670RUS.bigWig bigWig (minus strand signal of unique reads) 75.6 MB
ENCFF682DJF.bigWig bigWig (plus strand signal of all reads) 82.5 MB
ENCFF687RXM.tsv tsv (gene quantifications) 9.4 MB
ENCFF714ZCE.bigWig bigWig (minus strand signal of unique reads) 79.0 MB
ENCFF743EQA.bigWig bigWig (minus strand signal of all reads) 80.7 MB
ENCFF746AAX.bigWig bigWig (plus strand signal of unique reads) 78.7 MB
ENCFF759AUO.bigWig bigWig (minus strand signal of unique reads) 75.5 MB
ENCFF764AFV.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF767NAF.bigWig bigWig (minus strand signal of all reads) 90.1 MB
ENCFF781ZRV.bigWig bigWig (plus strand signal of unique reads) 84.0 MB
ENCFF782CVB.bigWig bigWig (minus strand signal of unique reads) 79.8 MB
ENCFF782IVP.tsv tsv (transcript quantifications) 24.9 MB
ENCFF810ZVW.bigWig bigWig (minus strand signal of unique reads) 75.0 MB
ENCFF813CJQ.bam bam (alignments) 5.1 GB
ENCFF818BNM.bam bam (alignments) 5.2 GB
ENCFF828EEG.tar tar (differential splicing quantifications) 4.3 MB
ENCFF846USG.tsv tsv (differential expression quantifications) 4.3 MB
ENCFF852BCQ.bigWig bigWig (plus strand signal of unique reads) 83.5 MB
ENCFF852KIA.bigWig bigWig (plus strand signal of unique reads) 77.7 MB
ENCFF874NRY.bam bam (transcriptome alignments) 7.7 GB
ENCFF888OUF.bigWig bigWig (minus strand signal of unique reads) 81.6 MB
ENCFF896JFJ.bam bam (alignments) 5.2 GB
ENCFF908BJP.bigWig bigWig (plus strand signal of all reads) 82.0 MB
ENCFF921YDI.bam bam (alignments) 5.4 GB
ENCFF938GXB.tsv tsv (gene quantifications) 9.1 MB
ENCFF957BWE.tar tar (differential splicing quantifications) 3.5 MB
ENCFF960YZS.tsv tsv (transcript quantifications) 29.8 MB
ENCFF965NCY.bigWig bigWig (plus strand signal of unique reads) 81.5 MB
ENCFF968IUX.bigWig bigWig (plus strand signal of all reads) 92.0 MB
ENCFF968XPU.bigWig bigWig (plus strand signal of all reads) 82.8 MB
ENCFF995OIL.bigWig bigWig (minus strand signal of all reads) 80.3 MB
ENCSR647CLF ENCSR · via encode_api

eCLIP experiment on K562 against GPKOW

Homo sapiens

34 data files
FileTypeSize
ENCFF040AJT.bed bed (peaks) 1.2 MB
ENCFF041SQT.bigBed bigBed (peaks) 529.5 KB
ENCFF054KNB.bigWig bigWig (minus strand signal of unique reads) 7.8 MB
ENCFF062JEH.fastq fastq (reads) 559.5 MB
ENCFF085PPS.fastq fastq (reads) 561.9 MB
ENCFF106AHH.bigBed bigBed (peaks) 2.2 MB
ENCFF135NMM.bigWig bigWig (minus strand signal of unique reads) 9.2 MB
ENCFF173GMF.bigWig bigWig (minus strand signal of unique reads) 9.1 MB
ENCFF186VGW.bigWig bigWig (plus strand signal of unique reads) 9.5 MB
ENCFF266IDC.bigWig bigWig (plus strand signal of unique reads) 9.4 MB
ENCFF318RDQ.bed bed (peaks) 1.3 MB
ENCFF342WGR.bigWig bigWig (plus strand signal of unique reads) 8.1 MB
ENCFF357GNY.fastq fastq (reads) 591.5 MB
ENCFF365GGV.bigBed bigBed (peaks) 415.3 KB
ENCFF368UWH.bigBed bigBed (peaks) 1.2 MB
ENCFF400PVK.bam bam (alignments) 165.2 MB
ENCFF410KNT.bed bed (peaks) 1.3 MB
ENCFF512KJQ.bigWig bigWig (plus strand signal of unique reads) 7.9 MB
ENCFF528XXE.bed bed (peaks) 572.1 KB
ENCFF618LHX.bigBed bigBed (peaks) 2.0 MB
ENCFF636IYL.bam bam (alignments) 194.8 MB
ENCFF674BUM.bed bed (peaks) 23.5 KB
ENCFF739BZK.bam bam (alignments) 161.1 MB
ENCFF760JZI.bed bed (peaks) 1.2 MB
ENCFF776RIX.fastq fastq (reads) 586.5 MB
ENCFF809WWV.bigWig bigWig (minus strand signal of unique reads) 7.6 MB
ENCFF865VDH.bigBed bigBed (peaks) 2.2 MB
ENCFF889CCS.bed bed (peaks) 24.6 KB
ENCFF915OVW.bigBed bigBed (peaks) 1.1 MB
ENCFF930UJF.bed bed (peaks) 626.7 KB
ENCFF941QIF.bigBed bigBed (peaks) 2.0 MB
ENCFF949AWE.bed bed (peaks) 217.2 KB
ENCFF966HIC.bam bam (alignments) 190.7 MB
ENCFF982XZC.bed bed (peaks) 196.8 KB
ENCSR660VTT ENCSR · via encode_api

eCLIP control experiment on K562 against YBX3

Homo sapiens

8 data files
FileTypeSize
ENCFF035HRR.fastq fastq (reads) 692.1 MB
ENCFF131CGH.fastq fastq (reads) 691.8 MB
ENCFF274LIF.bigWig bigWig (plus strand signal of unique reads) 18.5 MB
ENCFF329IEX.bigWig bigWig (plus strand signal of unique reads) 19.1 MB
ENCFF338RSM.bigWig bigWig (minus strand signal of unique reads) 17.8 MB
ENCFF405CXK.bam bam (alignments) 412.8 MB
ENCFF409LAD.bam bam (alignments) 421.1 MB
ENCFF787CHX.bigWig bigWig (minus strand signal of unique reads) 18.2 MB
ENCSR059CWF ENCSR · via encode_api

eCLIP experiment on K562 against SBDS

Homo sapiens

36 data files
FileTypeSize
ENCFF034VQL.bed bed (peaks) 94.2 KB
ENCFF051EEW.bed bed (peaks) 666.0 B
ENCFF054MDY.bigBed bigBed (peaks) 199.0 KB
ENCFF060XOS.bigWig bigWig (plus strand signal of unique reads) 2.6 MB
ENCFF061LXG.bigBed bigBed (peaks) 566.4 KB
ENCFF105PMR.bed bed (peaks) 378.0 B
ENCFF114WDK.fastq fastq (reads) 163.2 MB
ENCFF141SNV.bigWig bigWig (minus strand signal of unique reads) 3.1 MB
ENCFF175EIG.bed bed (peaks) 103.6 KB
ENCFF178CDC.bigBed bigBed (peaks) 274.1 KB
ENCFF281FSP.bam bam (alignments) 38.6 MB
ENCFF306DPG.bigWig bigWig (minus strand signal of unique reads) 2.6 MB
ENCFF322GTP.bigWig bigWig (minus strand signal of unique reads) 3.2 MB
ENCFF384NHH.bed bed (peaks) 127.9 KB
ENCFF385QVY.fastq fastq (reads) 163.4 MB
ENCFF413LUN.bigWig bigWig (plus strand signal of unique reads) 2.7 MB
ENCFF450LWH.bed bed (peaks) 96.1 KB
ENCFF516DYB.bed bed (peaks) 44.0 KB
ENCFF523LSW.fastq fastq (reads) 209.1 MB
ENCFF528DQU.bigBed bigBed (peaks) 473.1 KB
ENCFF615BWP.bigBed bigBed (peaks) 352.2 KB
ENCFF624FKF.bigBed bigBed (peaks) 300.1 KB
ENCFF635ASG.bam bam (alignments) 55.3 MB
ENCFF679UNR.bigWig bigWig (plus strand signal of unique reads) 3.4 MB
ENCFF743TGI.bed bed (peaks) 111.5 KB
ENCFF797RAY.bigBed bigBed (peaks) 184.6 KB
ENCFF820TYZ.bigBed bigBed (peaks) 283.5 KB
ENCFF840JWJ.bam bam (alignments) 57.7 MB
ENCFF873TSY.bed bed (peaks) 134.2 KB
ENCFF891WAN.bigBed bigBed (peaks) 304.8 KB
ENCFF926NDE.bed bed (peaks) 49.3 KB
ENCFF932LRA.fastq fastq (reads) 214.3 MB
ENCFF937KCE.bigWig bigWig (minus strand signal of unique reads) 2.5 MB
ENCFF943MLE.bigBed bigBed (peaks) 284.8 KB
ENCFF945CZJ.bigWig bigWig (plus strand signal of unique reads) 3.3 MB
ENCFF974XMI.bam bam (alignments) 41.2 MB
ENCSR118EFE ENCSR · via encode_api

Control shRNA against no target in K562 cells followed by RNA-seq. (NTB_BGKLV29)

Homo sapiens

84 data files
FileTypeSize
ENCFF005IBG.bigWig bigWig (plus strand signal of all reads) 81.7 MB
ENCFF006LUS.bam bam (alignments) 2.9 GB
ENCFF014DIB.bigWig bigWig (plus strand signal of all reads) 81.9 MB
ENCFF017HBF.bigWig bigWig (minus strand signal of unique reads) 75.2 MB
ENCFF024FBM.tsv tsv (transcript quantifications) 25.3 MB
ENCFF026SLE.bam bam (alignments) 3.7 GB
ENCFF075YFJ.bam bam (transcriptome alignments) 5.2 GB
ENCFF076BTH.fastq fastq (reads) 2.0 GB
ENCFF085HXL.bigWig bigWig (plus strand signal of all reads) 85.4 MB
ENCFF085LQO.bigWig bigWig (plus strand signal of all reads) 90.5 MB
ENCFF102OCP.bigWig bigWig (minus strand signal of all reads) 91.6 MB
ENCFF109ALP.bigWig bigWig (plus strand signal of all reads) 84.2 MB
ENCFF149TVA.bigWig bigWig (minus strand signal of unique reads) 75.2 MB
ENCFF155KPA.bigWig bigWig (minus strand signal of all reads) 85.7 MB
ENCFF168YWR.bam bam (alignments) 3.7 GB
ENCFF179FFD.bam bam (alignments) 3.9 GB
ENCFF181RKM.bam bam (transcriptome alignments) 6.0 GB
ENCFF199LOX.bigWig bigWig (plus strand signal of all reads) 78.5 MB
ENCFF206GOQ.bigWig bigWig (plus strand signal of unique reads) 70.9 MB
ENCFF227FZS.bam bam (alignments) 3.2 GB
ENCFF227XIE.bigWig bigWig (plus strand signal of unique reads) 75.5 MB
ENCFF240SEG.tsv tsv (transcript quantifications) 29.8 MB
ENCFF242PYL.bigWig bigWig (plus strand signal of all reads) 74.7 MB
ENCFF260FWR.bigWig bigWig (plus strand signal of all reads) 92.6 MB
ENCFF276SQQ.fastq fastq (reads) 2.2 GB
ENCFF279MBO.bigWig bigWig (minus strand signal of unique reads) 75.8 MB
ENCFF302BQF.bigWig bigWig (minus strand signal of unique reads) 75.0 MB
ENCFF333ZSQ.tsv tsv (gene quantifications) 9.1 MB
ENCFF343KTM.bigWig bigWig (minus strand signal of all reads) 73.4 MB
ENCFF355KZZ.bam bam (alignments) 2.9 GB
ENCFF368ZCE.bigWig bigWig (minus strand signal of all reads) 85.7 MB
ENCFF369RJP.bam bam (transcriptome alignments) 4.5 GB
ENCFF388UVN.tsv tsv (gene quantifications) 10.4 MB
ENCFF396WTZ.bigWig bigWig (plus strand signal of unique reads) 81.3 MB
ENCFF413IDF.bigWig bigWig (minus strand signal of unique reads) 70.2 MB
ENCFF454VDO.tsv tsv (gene quantifications) 9.1 MB
ENCFF463ZJZ.bigWig bigWig (minus strand signal of all reads) 82.9 MB
ENCFF469CVT.bam bam (transcriptome alignments) 4.6 GB
ENCFF498GOT.bigWig bigWig (minus strand signal of unique reads) 75.1 MB
ENCFF512KMR.tsv tsv (transcript quantifications) 27.3 MB
ENCFF525RTI.bigWig bigWig (plus strand signal of unique reads) 76.8 MB
ENCFF528NYY.bam bam (alignments) 3.2 GB
ENCFF541RWE.tsv tsv (gene quantifications) 9.5 MB
ENCFF544NUM.bam bam (alignments) 3.6 GB
ENCFF561NCQ.bigWig bigWig (minus strand signal of all reads) 77.3 MB
ENCFF568ZNA.tsv tsv (transcript quantifications) 25.3 MB
ENCFF638AAB.bigWig bigWig (plus strand signal of unique reads) 69.1 MB
ENCFF658WZI.bigWig bigWig (plus strand signal of unique reads) 76.8 MB
ENCFF660UES.bigWig bigWig (minus strand signal of unique reads) 73.6 MB
ENCFF671DXT.bigWig bigWig (minus strand signal of all reads) 89.5 MB
ENCFF704ZXJ.bigWig bigWig (plus strand signal of unique reads) 81.6 MB
ENCFF716UFC.bam bam (alignments) 3.2 GB
ENCFF738LXB.bam bam (alignments) 2.9 GB
ENCFF743XIN.bigWig bigWig (minus strand signal of all reads) 91.6 MB
ENCFF744HAK.bigWig bigWig (minus strand signal of unique reads) 79.4 MB
ENCFF760HQY.bigWig bigWig (plus strand signal of unique reads) 81.4 MB
ENCFF766SOB.fastq fastq (reads) 2.2 GB
ENCFF771IOH.bigWig bigWig (plus strand signal of all reads) 92.5 MB
ENCFF781GCB.bigWig bigWig (minus strand signal of unique reads) 67.4 MB
ENCFF788HBE.bigWig bigWig (plus strand signal of all reads) 76.4 MB
ENCFF795VPT.bigWig bigWig (plus strand signal of all reads) 86.6 MB
ENCFF814LZN.bigWig bigWig (minus strand signal of unique reads) 79.9 MB
ENCFF829MHP.bam bam (alignments) 4.1 GB
ENCFF834QNU.bigWig bigWig (plus strand signal of unique reads) 77.6 MB
ENCFF845JJJ.bigWig bigWig (minus strand signal of unique reads) 79.7 MB
ENCFF849JLK.bigWig bigWig (plus strand signal of all reads) 86.6 MB
ENCFF855CNK.bigWig bigWig (minus strand signal of all reads) 84.5 MB
ENCFF855ECK.tsv tsv (gene quantifications) 10.4 MB
ENCFF856NPQ.tsv tsv (gene quantifications) 9.5 MB
ENCFF862XES.bigWig bigWig (minus strand signal of all reads) 80.8 MB
ENCFF872SLD.fastq fastq (reads) 2.0 GB
ENCFF883OXF.bam bam (transcriptome alignments) 5.2 GB
ENCFF891SRW.bigWig bigWig (plus strand signal of unique reads) 71.9 MB
ENCFF903QHR.tsv tsv (transcript quantifications) 27.4 MB
ENCFF908CPP.bigWig bigWig (plus strand signal of unique reads) 76.6 MB
ENCFF926BKH.bigWig bigWig (plus strand signal of unique reads) 76.8 MB
ENCFF926PLI.tsv tsv (transcript quantifications) 24.9 MB
ENCFF938NFY.tsv tsv (transcript quantifications) 24.9 MB
ENCFF947BYV.bam bam (transcriptome alignments) 5.2 GB
ENCFF948CCC.tsv tsv (transcript quantifications) 29.8 MB
ENCFF949VOM.bigWig bigWig (minus strand signal of all reads) 80.5 MB
ENCFF954ZEF.bam bam (alignments) 4.1 GB
ENCFF955RLK.bigWig bigWig (minus strand signal of all reads) 75.6 MB
ENCFF999SAF.bigWig bigWig (minus strand signal of unique reads) 69.6 MB
ENCSR349KMG ENCSR · via encode_api

eCLIP experiment on K562 against UCHL5

Homo sapiens

34 data files
FileTypeSize
ENCFF016BUJ.bigWig bigWig (minus strand signal of unique reads) 24.3 MB
ENCFF039HDD.bigBed bigBed (peaks) 1013.2 KB
ENCFF063RZA.bigWig bigWig (minus strand signal of unique reads) 24.8 MB
ENCFF096AKL.fastq fastq (reads) 871.7 MB
ENCFF155EKG.fastq fastq (reads) 1.5 GB
ENCFF216ICY.bigWig bigWig (plus strand signal of unique reads) 25.1 MB
ENCFF268DRH.bed bed (peaks) 1.6 MB
ENCFF357UDV.bed bed (peaks) 2.6 MB
ENCFF365LFU.bed bed (peaks) 414.8 KB
ENCFF374PBK.bed bed (peaks) 402.5 KB
ENCFF424LXL.bigBed bigBed (peaks) 1.1 MB
ENCFF463FXX.bigBed bigBed (peaks) 4.9 MB
ENCFF483AGC.bigWig bigWig (plus strand signal of unique reads) 32.8 MB
ENCFF488QYF.bam bam (alignments) 692.4 MB
ENCFF488WVE.bed bed (peaks) 538.7 KB
ENCFF491PCQ.bed bed (peaks) 1.3 MB
ENCFF601KRU.bigBed bigBed (peaks) 2.6 MB
ENCFF618PQG.bigWig bigWig (minus strand signal of unique reads) 31.4 MB
ENCFF660XGG.bed bed (peaks) 3.2 MB
ENCFF681XDL.bigWig bigWig (plus strand signal of unique reads) 32.4 MB
ENCFF713NFZ.bed bed (peaks) 2.6 MB
ENCFF764QNQ.bed bed (peaks) 450.5 KB
ENCFF787FER.fastq fastq (reads) 811.8 MB
ENCFF807WFX.fastq fastq (reads) 1.4 GB
ENCFF835BLS.bigWig bigWig (minus strand signal of unique reads) 31.7 MB
ENCFF854UKV.bigBed bigBed (peaks) 6.0 MB
ENCFF874RGW.bigWig bigWig (plus strand signal of unique reads) 25.7 MB
ENCFF886YPC.bigBed bigBed (peaks) 3.7 MB
ENCFF903GDN.bam bam (alignments) 491.5 MB
ENCFF912GTJ.bed bed (peaks) 3.1 MB
ENCFF922LSS.bam bam (alignments) 499.7 MB
ENCFF952TJF.bam bam (alignments) 680.5 MB
ENCFF957MJB.bigBed bigBed (peaks) 5.9 MB
ENCFF968TYL.bigBed bigBed (peaks) 5.0 MB
ENCSR364GRM ENCSR · via encode_api

Control shRNA against no target in HepG2 cells followed by RNA-seq. (NT_BGHLV23-B)

Homo sapiens

84 data files
FileTypeSize
ENCFF002VSQ.tsv tsv (gene quantifications) 9.1 MB
ENCFF009GTQ.bigWig bigWig (plus strand signal of all reads) 90.3 MB
ENCFF021FWD.bigWig bigWig (minus strand signal of all reads) 82.1 MB
ENCFF028SQK.bigWig bigWig (plus strand signal of all reads) 70.0 MB
ENCFF082YZS.tsv tsv (transcript quantifications) 25.4 MB
ENCFF097SIH.bam bam (alignments) 4.5 GB
ENCFF109JEQ.tsv tsv (transcript quantifications) 27.4 MB
ENCFF134XBH.bigWig bigWig (plus strand signal of unique reads) 69.4 MB
ENCFF150UHB.fastq fastq (reads) 3.5 GB
ENCFF159TVI.bigWig bigWig (plus strand signal of unique reads) 78.2 MB
ENCFF161BXY.bigWig bigWig (minus strand signal of unique reads) 75.6 MB
ENCFF163XZQ.bigWig bigWig (plus strand signal of unique reads) 69.4 MB
ENCFF180DDV.tsv tsv (gene quantifications) 10.4 MB
ENCFF213KYW.bigWig bigWig (minus strand signal of all reads) 73.8 MB
ENCFF221TAV.tsv tsv (transcript quantifications) 25.0 MB
ENCFF222DGG.bigWig bigWig (plus strand signal of all reads) 82.1 MB
ENCFF231CTD.bam bam (transcriptome alignments) 5.8 GB
ENCFF244GPS.fastq fastq (reads) 2.6 GB
ENCFF259GZF.bigWig bigWig (minus strand signal of all reads) 74.5 MB
ENCFF270BPH.bigWig bigWig (minus strand signal of all reads) 74.5 MB
ENCFF285MXU.bigWig bigWig (plus strand signal of unique reads) 66.0 MB
ENCFF287NGG.tsv tsv (transcript quantifications) 25.4 MB
ENCFF287UHS.bigWig bigWig (minus strand signal of all reads) 80.5 MB
ENCFF298XED.bam bam (transcriptome alignments) 7.7 GB
ENCFF300DKK.bigWig bigWig (plus strand signal of unique reads) 77.6 MB
ENCFF304DEE.bam bam (alignments) 4.9 GB
ENCFF327YPN.fastq fastq (reads) 3.5 GB
ENCFF338BQC.bigWig bigWig (plus strand signal of all reads) 92.0 MB
ENCFF343LJU.bigWig bigWig (plus strand signal of all reads) 92.0 MB
ENCFF350JDC.bam bam (alignments) 3.6 GB
ENCFF360XFL.bigWig bigWig (minus strand signal of unique reads) 80.6 MB
ENCFF361ZGC.bigWig bigWig (minus strand signal of unique reads) 80.2 MB
ENCFF364BQE.bam bam (alignments) 5.0 GB
ENCFF370TKN.bigWig bigWig (minus strand signal of all reads) 67.1 MB
ENCFF374SBD.bigWig bigWig (minus strand signal of unique reads) 73.3 MB
ENCFF379PKN.bam bam (alignments) 3.6 GB
ENCFF388DXZ.bigWig bigWig (plus strand signal of all reads) 76.1 MB
ENCFF404VVI.tsv tsv (gene quantifications) 9.1 MB
ENCFF410BAI.bigWig bigWig (minus strand signal of all reads) 79.4 MB
ENCFF433MPP.bam bam (alignments) 5.9 GB
ENCFF438QMH.bam bam (alignments) 4.9 GB
ENCFF454PZZ.bam bam (transcriptome alignments) 7.8 GB
ENCFF481EFI.bigWig bigWig (plus strand signal of all reads) 81.2 MB
ENCFF486KVR.bigWig bigWig (minus strand signal of all reads) 88.8 MB
ENCFF488WGA.bam bam (alignments) 6.1 GB
ENCFF491RRV.bigWig bigWig (minus strand signal of all reads) 66.0 MB
ENCFF497GXY.tsv tsv (gene quantifications) 10.4 MB
ENCFF501JZA.tsv tsv (transcript quantifications) 29.9 MB
ENCFF515CED.bigWig bigWig (plus strand signal of unique reads) 69.0 MB
ENCFF532UUQ.tsv tsv (transcript quantifications) 25.0 MB
ENCFF578GGU.bigWig bigWig (minus strand signal of unique reads) 63.4 MB
ENCFF587DIQ.fastq fastq (reads) 2.6 GB
ENCFF591CPA.bigWig bigWig (plus strand signal of unique reads) 82.9 MB
ENCFF593ZPI.bigWig bigWig (minus strand signal of unique reads) 67.4 MB
ENCFF595HJN.bigWig bigWig (plus strand signal of unique reads) 63.6 MB
ENCFF605RNJ.bigWig bigWig (plus strand signal of all reads) 83.9 MB
ENCFF609PZS.tsv tsv (transcript quantifications) 29.9 MB
ENCFF611XDL.bam bam (transcriptome alignments) 5.8 GB
ENCFF614ZCL.bigWig bigWig (minus strand signal of unique reads) 67.5 MB
ENCFF616MPW.tsv tsv (gene quantifications) 9.5 MB
ENCFF625VAA.bam bam (alignments) 6.1 GB
ENCFF632AJC.bigWig bigWig (plus strand signal of all reads) 75.2 MB
ENCFF638DDK.bigWig bigWig (plus strand signal of unique reads) 75.6 MB
ENCFF644YIW.bigWig bigWig (minus strand signal of all reads) 90.2 MB
ENCFF650KXR.bam bam (alignments) 4.4 GB
ENCFF650ZEZ.bam bam (transcriptome alignments) 6.6 GB
ENCFF658JPO.bigWig bigWig (minus strand signal of unique reads) 76.0 MB
ENCFF666BYM.bigWig bigWig (plus strand signal of unique reads) 83.0 MB
ENCFF680SLE.bigWig bigWig (minus strand signal of unique reads) 80.7 MB
ENCFF689DMZ.bigWig bigWig (minus strand signal of unique reads) 64.1 MB
ENCFF690FET.bigWig bigWig (minus strand signal of all reads) 90.2 MB
ENCFF713UKE.bigWig bigWig (plus strand signal of all reads) 76.1 MB
ENCFF754VHB.tsv tsv (gene quantifications) 9.5 MB
ENCFF797NJB.bam bam (transcriptome alignments) 8.8 GB
ENCFF798POY.bigWig bigWig (plus strand signal of all reads) 68.5 MB
ENCFF827LNO.bam bam (alignments) 3.7 GB
ENCFF835QZY.bigWig bigWig (plus strand signal of unique reads) 65.2 MB
ENCFF837RUB.bigWig bigWig (minus strand signal of unique reads) 61.7 MB
ENCFF856WTR.bigWig bigWig (plus strand signal of unique reads) 82.5 MB
ENCFF895LLM.bigWig bigWig (minus strand signal of unique reads) 67.1 MB
ENCFF909UYT.bam bam (alignments) 4.5 GB
ENCFF933ELH.bigWig bigWig (minus strand signal of all reads) 68.5 MB
ENCFF957TZK.bigWig bigWig (plus strand signal of all reads) 67.5 MB
ENCFF976NSJ.tsv tsv (transcript quantifications) 27.2 MB
ENCSR528HOM ENCSR · via encode_api

eCLIP control experiment on K562 against ZRANB2

Homo sapiens

8 data files
FileTypeSize
ENCFF164CXV.bigWig bigWig (plus strand signal of unique reads) 15.9 MB
ENCFF215LAB.fastq fastq (reads) 589.6 MB
ENCFF291LRJ.bigWig bigWig (minus strand signal of unique reads) 15.6 MB
ENCFF464BYU.bigWig bigWig (minus strand signal of unique reads) 15.3 MB
ENCFF554SKU.fastq fastq (reads) 594.4 MB
ENCFF562FIX.bam bam (alignments) 341.2 MB
ENCFF824LSN.bam bam (alignments) 347.4 MB
ENCFF846GLP.bigWig bigWig (plus strand signal of unique reads) 16.2 MB
ENCSR943MHU ENCSR · via encode_api

eCLIP experiment on K562 against SAFB2

Homo sapiens

36 data files
FileTypeSize
ENCFF005MGD.bigBed bigBed (peaks) 955.3 KB
ENCFF021GVX.bigBed bigBed (peaks) 6.1 MB
ENCFF022ERA.bigWig bigWig (plus strand signal of unique reads) 41.3 MB
ENCFF082JRS.fastq fastq (reads) 508.8 MB
ENCFF193UPY.bed bed (peaks) 78.0 KB
ENCFF273BVZ.bed bed (peaks) 3.4 MB
ENCFF331HKI.bed bed (peaks) 183.0 KB
ENCFF370VYY.bigBed bigBed (peaks) 5.9 MB
ENCFF402QLV.bam bam (alignments) 774.9 MB
ENCFF434KAR.bigBed bigBed (peaks) 441.3 KB
ENCFF488ZWQ.bam bam (alignments) 785.5 MB
ENCFF492OEQ.bigWig bigWig (plus strand signal of unique reads) 40.9 MB
ENCFF594EDV.bed bed (peaks) 79.2 KB
ENCFF598CPP.bigWig bigWig (minus strand signal of unique reads) 40.2 MB
ENCFF616SUL.bigBed bigBed (peaks) 1.9 MB
ENCFF646ISN.bigWig bigWig (minus strand signal of unique reads) 40.6 MB
ENCFF657TKX.bigBed bigBed (peaks) 5.9 MB
ENCFF663LQH.bam bam (alignments) 872.9 MB
ENCFF673QCY.bed bed (peaks) 551.8 KB
ENCFF686AAU.bigWig bigWig (plus strand signal of unique reads) 43.9 MB
ENCFF705VVX.bigWig bigWig (minus strand signal of unique reads) 42.9 MB
ENCFF734RGL.bam bam (alignments) 863.0 MB
ENCFF771CPV.bigBed bigBed (peaks) 541.2 KB
ENCFF782ZNC.bigBed bigBed (peaks) 6.1 MB
ENCFF801ARQ.bed bed (peaks) 3.3 MB
ENCFF818JEX.bigWig bigWig (plus strand signal of unique reads) 43.6 MB
ENCFF820EYG.fastq fastq (reads) 538.6 MB
ENCFF861YZK.bigBed bigBed (peaks) 1.2 MB
ENCFF871RJA.bed bed (peaks) 3.3 MB
ENCFF878YBB.fastq fastq (reads) 558.5 MB
ENCFF880FIG.bigWig bigWig (minus strand signal of unique reads) 43.2 MB
ENCFF893FMD.bed bed (peaks) 3.4 MB
ENCFF897VPQ.bed bed (peaks) 508.3 KB
ENCFF899HPH.fastq fastq (reads) 527.1 MB
ENCFF912PIY.bigBed bigBed (peaks) 1.8 MB
ENCFF921XQP.bed bed (peaks) 198.8 KB
ENCSR197INS ENCSR · via encode_api

eCLIP experiment on K562 against PPIL4

Homo sapiens

35 data files
FileTypeSize
ENCFF004RVX.bigBed bigBed (peaks); assembly: GRCh38 382.7 KB
ENCFF028OXA.bigBed bigBed (peaks); assembly: hg19 4.4 MB
ENCFF036ZXE.bed bed (peaks); assembly: hg19 2.3 MB
ENCFF045ANJ.fastq fastq (reads) 586.8 MB
ENCFF178WNA.bigBed bigBed (peaks); assembly: GRCh38 2.8 MB
ENCFF179UGN.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 21.9 MB
ENCFF188XKC.bed bed (peaks); assembly: hg19 1.8 MB
ENCFF194KZE.bam bam (alignments); assembly: hg19 567.2 MB
ENCFF220VDV.bed bed (peaks); assembly: GRCh38 2.3 MB
ENCFF234LRU.fastq fastq (reads) 442.8 MB
ENCFF277LUS.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 26.5 MB
ENCFF326MGP.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 27.1 MB
ENCFF364OUY.bed bed (peaks); assembly: hg19 463.7 KB
ENCFF366XQT.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 21.2 MB
ENCFF387QWV.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 22.3 MB
ENCFF410EMT.bigBed bigBed (peaks); assembly: GRCh38 4.4 MB
ENCFF427FOO.fastq fastq (reads) 599.4 MB
ENCFF440PMK.bigBed bigBed (peaks); assembly: hg19 1.2 MB
ENCFF486WMD.bigBed bigBed (peaks); assembly: hg19 2.4 MB
ENCFF507MHJ.bigBed bigBed (peaks); assembly: hg19 895.6 KB
ENCFF531JAB.bigBed bigBed (peaks); assembly: GRCh38 491.4 KB
ENCFF546EKR.bed bed (peaks); assembly: hg19 13.6 KB
ENCFF559HGK.bed bed (peaks); assembly: GRCh38 14.0 KB
ENCFF601IBB.bam bam (alignments); assembly: hg19 439.0 MB
ENCFF605SJT.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 25.8 MB
ENCFF646OBY.bed bed (peaks); assembly: hg19 660.7 KB
ENCFF648KRQ.bam bam (alignments); assembly: GRCh38 549.2 MB
ENCFF659VVA.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 26.3 MB
ENCFF669UKN.bed bed (peaks); assembly: GRCh38 145.9 KB
ENCFF727EPC.bigBed bigBed (peaks); assembly: hg19 2.8 MB
ENCFF777KZL.bed bed (peaks); assembly: GRCh38 212.0 KB
ENCFF823SYP.bam bam (alignments); assembly: GRCh38 425.7 MB
ENCFF854FTL.fastq fastq (reads) 452.2 MB
ENCFF926PKF.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 21.6 MB
ENCFF987VIP.bed bed (peaks); assembly: GRCh38 1.8 MB
ENCSR867DSZ ENCSR · via encode_api

eCLIP experiment on K562 against NPM1

Homo sapiens

35 data files
FileTypeSize
ENCFF013GRO.bed bed (peaks) 91.2 KB
ENCFF092RGX.bigWig bigWig (minus strand signal of unique reads) 5.4 MB
ENCFF154AYH.bed bed (peaks) 1.3 KB
ENCFF161ISV.bigWig bigWig (plus strand signal of unique reads) 5.7 MB
ENCFF167SMN.bigWig bigWig (plus strand signal of unique reads) 5.8 MB
ENCFF177GMP.bed bed (peaks) 376.0 KB
ENCFF182LNR.bed bed (peaks) 234.5 KB
ENCFF213IOD.bigBed bigBed (peaks) 797.5 KB
ENCFF217PBP.fastq fastq (reads) 265.3 MB
ENCFF296SGC.bigWig bigWig (plus strand signal of unique reads) 3.1 MB
ENCFF365ZOS.bed bed (peaks) 89.8 KB
ENCFF392QAQ.bed bed (peaks) 384.8 KB
ENCFF397HOJ.bigBed bigBed (peaks) 427.3 KB
ENCFF415BMS.bam bam (alignments) 42.6 MB
ENCFF430BKM.bed bed (peaks) 179.2 KB
ENCFF458CCV.bigBed bigBed (peaks) 246.8 KB
ENCFF531FNJ.bam bam (alignments) 105.1 MB
ENCFF533NRD.bigBed bigBed (peaks) 398.2 KB
ENCFF545FMX.bed bed (peaks) 1.2 KB
ENCFF586YCP.bigWig bigWig (minus strand signal of unique reads) 3.0 MB
ENCFF645QXB.bigBed bigBed (peaks) 783.8 KB
ENCFF656YTJ.bigWig bigWig (minus strand signal of unique reads) 2.9 MB
ENCFF669BCV.bed bed (peaks) 196.8 KB
ENCFF741BIN.fastq fastq (reads) 291.1 MB
ENCFF743GIA.bed bed (peaks) 200.8 KB
ENCFF763CJW.bigWig bigWig (plus strand signal of unique reads) 3.1 MB
ENCFF771ZQZ.bigBed bigBed (peaks) 885.9 KB
ENCFF781GFB.bigBed bigBed (peaks) 422.3 KB
ENCFF821CJH.bigWig bigWig (minus strand signal of unique reads) 5.5 MB
ENCFF838PWO.bigBed bigBed (peaks) 555.7 KB
ENCFF869TMY.bigBed bigBed (peaks) 215.2 KB
ENCFF938BSK.fastq fastq (reads) 278.4 MB
ENCFF945CYO.bam bam (alignments) 41.5 MB
ENCFF954XWJ.bam bam (alignments) 102.3 MB
ENCFF996KND.fastq fastq (reads) 244.3 MB
ENCSR120EAR ENCSR · via encode_api

eCLIP experiment on K562 against RPS3

Homo sapiens

28 data files
FileTypeSize
ENCFF039XZE.bigWig bigWig (minus strand signal of unique reads) 6.6 MB
ENCFF094OTN.bam bam (alignments) 118.2 MB
ENCFF111EUR.fastq fastq (reads) 667.2 MB
ENCFF186FBQ.bigWig bigWig (plus strand signal of unique reads) 6.8 MB
ENCFF199OFQ.bigBed bigBed (peaks) 1.4 MB
ENCFF209JOZ.fastq fastq (reads) 661.2 MB
ENCFF223NWJ.bigBed bigBed (peaks) 1.1 MB
ENCFF250XVF.fastq fastq (reads) 591.8 MB
ENCFF261EDX.bigWig bigWig (minus strand signal of unique reads) 6.5 MB
ENCFF306SQC.bigBed bigBed (peaks) 1.4 MB
ENCFF323ZDL.bed bed (peaks) 656.4 KB
ENCFF467NIF.bed bed (peaks) 501.4 KB
ENCFF481DSP.bam bam (alignments) 112.3 MB
ENCFF487EXG.bed bed (peaks) 647.9 KB
ENCFF528YKE.bam bam (alignments) 115.3 MB
ENCFF530HTL.bed bed (peaks) 56.6 KB
ENCFF544ECV.fastq fastq (reads) 572.1 MB
ENCFF544OWP.bigWig bigWig (plus strand signal of unique reads) 6.9 MB
ENCFF546DDF.bed bed (peaks) 641.7 KB
ENCFF570JFT.bed bed (peaks) 492.8 KB
ENCFF658GQD.bigWig bigWig (minus strand signal of unique reads) 6.4 MB
ENCFF830RMG.bam bam (alignments) 115.0 MB
ENCFF834BGX.bed bed (peaks) 57.0 KB
ENCFF875KNZ.bigWig bigWig (plus strand signal of unique reads) 6.6 MB
ENCFF890WMA.bigBed bigBed (peaks) 1.4 MB
ENCFF896OMJ.bigWig bigWig (minus strand signal of unique reads) 6.5 MB
ENCFF922WMS.bed bed (peaks) 648.1 KB
ENCFF930CLN.bigWig bigWig (plus strand signal of unique reads) 6.7 MB
ENCSR831ZFS ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) input control experiment of hnRNPC

1 data file
FileTypeSize
ENCFF658BYB.fastq fastq (reads) 336.1 MB
ENCSR301UQM ENCSR · via encode_api

eCLIP experiment on K562 against GNL3

Homo sapiens

36 data files
FileTypeSize
ENCFF004XHQ.bed bed (peaks) 650.5 KB
ENCFF029RXW.bigBed bigBed (peaks) 832.6 KB
ENCFF048RLZ.bed bed (peaks) 1.0 KB
ENCFF103IUP.bigWig bigWig (minus strand signal of unique reads) 3.6 MB
ENCFF158KFL.bed bed (peaks) 145.6 KB
ENCFF171HNG.bigBed bigBed (peaks) 334.6 KB
ENCFF196IVQ.bigWig bigWig (minus strand signal of unique reads) 6.2 MB
ENCFF229XVK.bigBed bigBed (peaks) 1.2 MB
ENCFF282DMO.bam bam (alignments) 58.9 MB
ENCFF296QFP.bigWig bigWig (plus strand signal of unique reads) 3.7 MB
ENCFF298PPE.bigBed bigBed (peaks) 460.8 KB
ENCFF331KTS.bed bed (peaks) 640.7 KB
ENCFF362VEE.bigBed bigBed (peaks) 704.4 KB
ENCFF364XWE.fastq fastq (reads) 476.1 MB
ENCFF372XJQ.bam bam (alignments) 116.7 MB
ENCFF379DSY.bam bam (alignments) 119.6 MB
ENCFF410KLG.fastq fastq (reads) 442.9 MB
ENCFF424ZQP.fastq fastq (reads) 213.9 MB
ENCFF484XJQ.bam bam (alignments) 57.3 MB
ENCFF509YYT.fastq fastq (reads) 197.5 MB
ENCFF570HZI.bed bed (peaks) 184.6 KB
ENCFF572EKQ.bed bed (peaks) 390.2 KB
ENCFF581XWV.bigBed bigBed (peaks) 411.8 KB
ENCFF618SKT.bigBed bigBed (peaks) 243.8 KB
ENCFF654ODX.bigBed bigBed (peaks) 452.3 KB
ENCFF656FVZ.bigWig bigWig (minus strand signal of unique reads) 6.3 MB
ENCFF662YBW.bigBed bigBed (peaks) 1.6 MB
ENCFF694JOA.bigBed bigBed (peaks) 1.2 MB
ENCFF701JYH.bigWig bigWig (plus strand signal of unique reads) 6.4 MB
ENCFF711GSR.bigWig bigWig (plus strand signal of unique reads) 3.7 MB
ENCFF800XSC.bed bed (peaks) 946.0 B
ENCFF825HPV.bed bed (peaks) 159.1 KB
ENCFF893YAR.bed bed (peaks) 69.8 KB
ENCFF902LYR.bigWig bigWig (plus strand signal of unique reads) 6.5 MB
ENCFF917IBY.bigWig bigWig (minus strand signal of unique reads) 3.5 MB
ENCFF943BFF.bed bed (peaks) 188.9 KB
ENCSR247PDK ENCSR · via encode_api

eCLIP control experiment on HepG2 against XRN2

Homo sapiens

8 data files
FileTypeSize
ENCFF147FKV.fastq fastq (reads) 780.5 MB
ENCFF200KGB.bigWig bigWig (plus strand signal of unique reads) 32.1 MB
ENCFF459NNJ.bigWig bigWig (plus strand signal of unique reads) 31.7 MB
ENCFF464CYN.bigWig bigWig (minus strand signal of unique reads) 31.5 MB
ENCFF547DPQ.bigWig bigWig (minus strand signal of unique reads) 31.1 MB
ENCFF561NXC.bam bam (alignments) 674.5 MB
ENCFF723GEY.bam bam (alignments) 666.6 MB
ENCFF947NEA.fastq fastq (reads) 730.1 MB
ENCSR759QKO ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) pulldown experiment against RBM25

13 data files
FileTypeSize
ENCFF066NPP.fastq fastq (reads) 591.5 MB
ENCFF135TEV.tsv tsv (enrichment) 688.0 KB
ENCFF170PGF.tsv tsv (enrichment) 168.0 KB
ENCFF252CDY.tsv tsv (library fraction) 1.1 MB
ENCFF353VKL.fastq fastq (reads) 448.8 MB
ENCFF410QTN.fastq fastq (reads) 465.1 MB
ENCFF485TKI.tsv tsv (enrichment) 10.0 KB
ENCFF514QXS.tsv tsv (library fraction) 63.7 KB
ENCFF556OQE.tsv tsv (library fraction) 265.7 KB
ENCFF701SYD.fastq fastq (reads) 462.3 MB
ENCFF713WFE.tsv tsv (library fraction) 15.0 KB
ENCFF872SLK.tsv tsv (enrichment) 41.0 KB
ENCFF897ZRK.fastq fastq (reads) 448.7 MB
ENCSR229VBP ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) pulldown experiment against RALYL

12 data files
FileTypeSize
ENCFF270JEN.tsv tsv (library fraction) 217.9 KB
ENCFF338FGB.tsv tsv (enrichment) 8.3 KB
ENCFF345AMU.fastq fastq (reads) 645.4 MB
ENCFF378TGV.tsv tsv (library fraction) 888.9 KB
ENCFF398QRT.tsv tsv (library fraction) 12.4 KB
ENCFF432AZE.fastq fastq (reads) 584.8 MB
ENCFF449PEQ.tsv tsv (enrichment) 576.1 KB
ENCFF464RSK.fastq fastq (reads) 502.5 MB
ENCFF524JIG.tsv tsv (enrichment) 140.0 KB
ENCFF532TOJ.fastq fastq (reads) 314.1 MB
ENCFF889PPG.tsv tsv (enrichment) 34.0 KB
ENCFF927RWU.tsv tsv (library fraction) 52.4 KB
ENCSR331VNX ENCSR · via encode_api

eCLIP experiment on K562 against FMR1

Homo sapiens

36 data files
FileTypeSize
ENCFF005ASC.bed bed (peaks) 834.2 KB
ENCFF045VDY.bigBed bigBed (peaks) 666.1 KB
ENCFF092SIF.bigBed bigBed (peaks) 1.9 MB
ENCFF111LIY.fastq fastq (reads) 240.0 MB
ENCFF130ZRT.bigBed bigBed (peaks) 802.5 KB
ENCFF217LJP.fastq fastq (reads) 273.1 MB
ENCFF310SIK.bigWig bigWig (minus strand signal of unique reads) 8.4 MB
ENCFF319MIE.fastq fastq (reads) 249.5 MB
ENCFF337OXN.bigBed bigBed (peaks) 2.4 MB
ENCFF367ZJS.bed bed (peaks) 990.6 KB
ENCFF377LAA.bigBed bigBed (peaks) 1.9 MB
ENCFF384LIR.bigBed bigBed (peaks) 3.2 MB
ENCFF393YLO.bed bed (peaks) 1.1 MB
ENCFF436TNC.bam bam (alignments) 121.7 MB
ENCFF441DGZ.bigWig bigWig (plus strand signal of unique reads) 11.0 MB
ENCFF441ZDI.bigWig bigWig (plus strand signal of unique reads) 11.2 MB
ENCFF454HHT.bigWig bigWig (minus strand signal of unique reads) 8.5 MB
ENCFF457ETB.bed bed (peaks) 950.5 KB
ENCFF464VRH.bed bed (peaks) 381.0 KB
ENCFF473OKU.bed bed (peaks) 316.7 KB
ENCFF480NUZ.bed bed (peaks) 73.9 KB
ENCFF525EHR.bam bam (alignments) 122.4 MB
ENCFF568TEQ.bigBed bigBed (peaks) 2.1 MB
ENCFF647ULQ.fastq fastq (reads) 219.7 MB
ENCFF693DNX.bam bam (alignments) 154.2 MB
ENCFF700XBC.bed bed (peaks) 70.4 KB
ENCFF734CGK.bigWig bigWig (plus strand signal of unique reads) 8.7 MB
ENCFF736XNI.bam bam (alignments) 151.7 MB
ENCFF845EEJ.bed bed (peaks) 1.2 MB
ENCFF860NIK.bigBed bigBed (peaks) 4.0 MB
ENCFF898JKK.bigBed bigBed (peaks) 2.4 MB
ENCFF907OCS.bigWig bigWig (minus strand signal of unique reads) 10.8 MB
ENCFF928HDW.bigWig bigWig (minus strand signal of unique reads) 10.9 MB
ENCFF965SEZ.bed bed (peaks) 934.2 KB
ENCFF988UEX.bigBed bigBed (peaks) 1.7 MB
ENCFF997CVI.bigWig bigWig (plus strand signal of unique reads) 8.7 MB
ENCSR067GHD ENCSR · via encode_api

Control shRNA against no target in HepG2 cells followed by RNA-seq. (NT_BGHLV30)

Homo sapiens

84 data files
FileTypeSize
ENCFF009AIK.bigWig bigWig (minus strand signal of unique reads) 56.7 MB
ENCFF009ROZ.bigWig bigWig (minus strand signal of all reads) 63.8 MB
ENCFF032IND.bam bam (alignments) 3.6 GB
ENCFF032WXR.bigWig bigWig (minus strand signal of unique reads) 50.4 MB
ENCFF034KZZ.bigWig bigWig (minus strand signal of all reads) 54.8 MB
ENCFF057DFZ.bigWig bigWig (plus strand signal of unique reads) 72.5 MB
ENCFF095HKS.bigWig bigWig (plus strand signal of all reads) 77.8 MB
ENCFF110JDT.bigWig bigWig (minus strand signal of all reads) 63.1 MB
ENCFF110YAB.bam bam (transcriptome alignments) 6.8 GB
ENCFF124DWE.bam bam (alignments) 3.0 GB
ENCFF136KRA.bigWig bigWig (plus strand signal of all reads) 56.1 MB
ENCFF142YYQ.bigWig bigWig (plus strand signal of unique reads) 55.0 MB
ENCFF150JAH.bigWig bigWig (plus strand signal of all reads) 65.2 MB
ENCFF177KGE.bigWig bigWig (plus strand signal of all reads) 64.2 MB
ENCFF178MWG.fastq fastq (reads) 2.0 GB
ENCFF189UUG.bigWig bigWig (minus strand signal of unique reads) 53.4 MB
ENCFF193JYI.bigWig bigWig (minus strand signal of unique reads) 70.5 MB
ENCFF194USR.bam bam (transcriptome alignments) 4.8 GB
ENCFF211ILW.bigWig bigWig (plus strand signal of all reads) 86.1 MB
ENCFF217THJ.tsv tsv (transcript quantifications) 25.0 MB
ENCFF218HGX.bigWig bigWig (minus strand signal of unique reads) 75.3 MB
ENCFF229FMH.bigWig bigWig (plus strand signal of all reads) 84.9 MB
ENCFF229VBF.fastq fastq (reads) 2.0 GB
ENCFF230JLO.tsv tsv (gene quantifications) 9.5 MB
ENCFF231QDM.bam bam (alignments) 5.6 GB
ENCFF236XCF.bam bam (alignments) 3.5 GB
ENCFF240POP.bigWig bigWig (minus strand signal of unique reads) 52.8 MB
ENCFF273ODD.bigWig bigWig (minus strand signal of all reads) 63.9 MB
ENCFF304ITC.bam bam (alignments) 5.6 GB
ENCFF310QXM.bigWig bigWig (minus strand signal of all reads) 83.5 MB
ENCFF313AXU.bigWig bigWig (minus strand signal of all reads) 56.2 MB
ENCFF314JFK.bigWig bigWig (plus strand signal of unique reads) 72.4 MB
ENCFF335VVV.bigWig bigWig (plus strand signal of all reads) 75.7 MB
ENCFF337NOS.bigWig bigWig (plus strand signal of unique reads) 54.3 MB
ENCFF361CJL.bigWig bigWig (plus strand signal of all reads) 86.2 MB
ENCFF361FSH.bigWig bigWig (plus strand signal of unique reads) 52.0 MB
ENCFF367RZH.bigWig bigWig (plus strand signal of unique reads) 58.3 MB
ENCFF368CNK.bigWig bigWig (plus strand signal of unique reads) 77.5 MB
ENCFF372BXF.bigWig bigWig (minus strand signal of all reads) 74.0 MB
ENCFF376WQN.bam bam (alignments) 3.6 GB
ENCFF381NKF.bigWig bigWig (minus strand signal of unique reads) 67.8 MB
ENCFF381QQT.bigWig bigWig (minus strand signal of all reads) 74.2 MB
ENCFF388NUG.bam bam (transcriptome alignments) 4.2 GB
ENCFF406NVX.bigWig bigWig (plus strand signal of all reads) 58.9 MB
ENCFF423BYY.bam bam (alignments) 3.0 GB
ENCFF460FBF.tsv tsv (transcript quantifications) 25.3 MB
ENCFF491IGF.bigWig bigWig (minus strand signal of all reads) 84.5 MB
ENCFF528UQK.tsv tsv (gene quantifications) 10.4 MB
ENCFF557UUO.bam bam (transcriptome alignments) 6.7 GB
ENCFF572HSK.bigWig bigWig (plus strand signal of all reads) 65.2 MB
ENCFF583LMO.tsv tsv (transcript quantifications) 29.8 MB
ENCFF616TEX.bigWig bigWig (plus strand signal of unique reads) 58.6 MB
ENCFF624YTY.tsv tsv (transcript quantifications) 29.9 MB
ENCFF631AJK.bigWig bigWig (plus strand signal of unique reads) 69.9 MB
ENCFF659PYW.bigWig bigWig (minus strand signal of unique reads) 75.3 MB
ENCFF662JZG.bam bam (transcriptome alignments) 7.6 GB
ENCFF675ZIX.bam bam (alignments) 3.0 GB
ENCFF684CHH.bigWig bigWig (minus strand signal of all reads) 76.3 MB
ENCFF688NVK.bigWig bigWig (plus strand signal of unique reads) 58.3 MB
ENCFF693OIN.bigWig bigWig (minus strand signal of unique reads) 56.6 MB
ENCFF707PZG.tsv tsv (transcript quantifications) 27.4 MB
ENCFF715NHE.bigWig bigWig (minus strand signal of unique reads) 56.9 MB
ENCFF720HZL.bigWig bigWig (plus strand signal of all reads) 75.7 MB
ENCFF732DSI.tsv tsv (transcript quantifications) 25.3 MB
ENCFF764XUC.bigWig bigWig (plus strand signal of unique reads) 77.9 MB
ENCFF768JSC.fastq fastq (reads) 3.1 GB
ENCFF772CWO.tsv tsv (transcript quantifications) 27.2 MB
ENCFF773HLT.fastq fastq (reads) 3.1 GB
ENCFF774FAK.bam bam (alignments) 4.5 GB
ENCFF782BWG.bam bam (alignments) 4.6 GB
ENCFF841BQQ.bigWig bigWig (minus strand signal of unique reads) 70.5 MB
ENCFF847QUC.bigWig bigWig (plus strand signal of unique reads) 77.5 MB
ENCFF851XLD.bigWig bigWig (plus strand signal of all reads) 57.4 MB
ENCFF861ZJD.tsv tsv (gene quantifications) 10.4 MB
ENCFF868JAV.tsv tsv (gene quantifications) 9.4 MB
ENCFF871LQG.bigWig bigWig (minus strand signal of all reads) 84.5 MB
ENCFF901WHO.bam bam (alignments) 5.4 GB
ENCFF944OKQ.bigWig bigWig (minus strand signal of all reads) 57.6 MB
ENCFF950KHF.tsv tsv (transcript quantifications) 24.9 MB
ENCFF952UHA.bigWig bigWig (minus strand signal of unique reads) 75.7 MB
ENCFF967HKW.bam bam (alignments) 4.5 GB
ENCFF968NJB.tsv tsv (gene quantifications) 9.1 MB
ENCFF982KKR.bam bam (transcriptome alignments) 4.2 GB
ENCFF990KGR.tsv tsv (gene quantifications) 9.1 MB
ENCSR576SHT ENCSR · via encode_api

eCLIP experiment on K562 against DDX42

Homo sapiens

36 data files
FileTypeSize
ENCFF008GNX.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 10.5 MB
ENCFF028IXB.bed bed (peaks); assembly: GRCh38 739.0 KB
ENCFF032CWK.fastq fastq (reads) 303.1 MB
ENCFF092NLI.fastq fastq (reads) 263.6 MB
ENCFF106FPU.bam bam (alignments); assembly: GRCh38 157.8 MB
ENCFF155RZO.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 6.6 MB
ENCFF172BNP.bigBed bigBed (peaks); assembly: hg19 1.6 MB
ENCFF185UNK.bigBed bigBed (peaks); assembly: hg19 804.1 KB
ENCFF193HOO.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 9.9 MB
ENCFF196YUL.fastq fastq (reads) 244.5 MB
ENCFF220NDA.bam bam (alignments); assembly: GRCh38 134.6 MB
ENCFF248XLD.bed bed (peaks); assembly: GRCh38 139.0 KB
ENCFF337FDR.bam bam (alignments); assembly: hg19 159.6 MB
ENCFF367VYJ.bed bed (peaks); assembly: hg19 2.8 KB
ENCFF374EMH.bigBed bigBed (peaks); assembly: hg19 1.5 MB
ENCFF393UZS.bed bed (peaks); assembly: hg19 425.1 KB
ENCFF399GGH.bed bed (peaks); assembly: GRCh38 3.0 KB
ENCFF404VAY.bed bed (peaks); assembly: GRCh38 134.1 KB
ENCFF411XIQ.bigBed bigBed (peaks); assembly: hg19 1.3 MB
ENCFF441HHV.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 10.1 MB
ENCFF450GCJ.fastq fastq (reads) 282.7 MB
ENCFF452WPL.bigBed bigBed (peaks); assembly: hg19 864.0 KB
ENCFF486JIC.bed bed (peaks); assembly: hg19 387.3 KB
ENCFF535IDF.bigBed bigBed (peaks); assembly: GRCh38 369.1 KB
ENCFF615THP.bed bed (peaks); assembly: hg19 742.5 KB
ENCFF755FOC.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 6.9 MB
ENCFF821OQU.bigBed bigBed (peaks); assembly: GRCh38 1.3 MB
ENCFF847LWE.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 7.0 MB
ENCFF868JHW.bigBed bigBed (peaks); assembly: GRCh38 1.6 MB
ENCFF874RBP.bed bed (peaks); assembly: hg19 926.7 KB
ENCFF890IGS.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 6.6 MB
ENCFF920GHG.bam bam (alignments); assembly: hg19 136.3 MB
ENCFF928GVI.bigBed bigBed (peaks); assembly: GRCh38 377.1 KB
ENCFF932WUK.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 10.6 MB
ENCFF941XGK.bigBed bigBed (peaks); assembly: hg19 1.6 MB
ENCFF981ZPT.bed bed (peaks); assembly: GRCh38 922.0 KB
ENCSR668MJX ENCSR · via encode_api

eCLIP experiment on HepG2 against GRSF1

Homo sapiens

36 data files
FileTypeSize
ENCFF012QNB.bigWig bigWig (minus strand signal of unique reads) 6.0 MB
ENCFF014TJW.bigWig bigWig (plus strand signal of unique reads) 9.5 MB
ENCFF035PED.bigBed bigBed (peaks) 923.0 KB
ENCFF041OHK.bed bed (peaks) 194.2 KB
ENCFF054TDA.bigBed bigBed (peaks) 476.4 KB
ENCFF059PZS.bam bam (alignments) 249.0 MB
ENCFF071NER.bigWig bigWig (minus strand signal of unique reads) 7.0 MB
ENCFF103XLC.bed bed (peaks) 24.3 KB
ENCFF134DRY.bed bed (peaks) 196.8 KB
ENCFF136TXI.bigBed bigBed (peaks) 470.7 KB
ENCFF159TLM.bed bed (peaks) 477.7 KB
ENCFF163SXQ.bam bam (alignments) 324.0 MB
ENCFF194GFF.bigBed bigBed (peaks) 1.8 MB
ENCFF219KHR.bed bed (peaks) 760.8 KB
ENCFF236THW.bed bed (peaks) 763.4 KB
ENCFF251ECY.bigBed bigBed (peaks) 1.4 MB
ENCFF275JLY.bigBed bigBed (peaks) 1.8 MB
ENCFF338LOF.bam bam (alignments) 305.7 MB
ENCFF374FFC.bam bam (alignments) 259.7 MB
ENCFF427GWM.fastq fastq (reads) 466.8 MB
ENCFF442HUJ.bigWig bigWig (minus strand signal of unique reads) 9.5 MB
ENCFF451GQU.bed bed (peaks) 779.3 KB
ENCFF472ZHK.bed bed (peaks) 465.4 KB
ENCFF609LIA.bigWig bigWig (minus strand signal of unique reads) 6.1 MB
ENCFF632PGX.bigBed bigBed (peaks) 1.3 MB
ENCFF683IWD.bigBed bigBed (peaks) 1.3 MB
ENCFF712VQF.bigWig bigWig (plus strand signal of unique reads) 6.3 MB
ENCFF731WXL.bigBed bigBed (peaks) 1.3 MB
ENCFF733VOV.bed bed (peaks) 777.2 KB
ENCFF844XOI.bigWig bigWig (plus strand signal of unique reads) 6.1 MB
ENCFF849QWP.bigBed bigBed (peaks) 917.5 KB
ENCFF886HXX.fastq fastq (reads) 618.2 MB
ENCFF901NTZ.bigWig bigWig (plus strand signal of unique reads) 9.8 MB
ENCFF929AWR.bed bed (peaks) 24.8 KB
ENCFF948LDL.fastq fastq (reads) 581.4 MB
ENCFF955NYU.fastq fastq (reads) 489.7 MB
ENCSR594DNW ENCSR · via encode_api

RNA-seq on HepG2 cells treated with an shRNA knockdown against CPSF7. (CPSF7_BGHLV30)

Homo sapiens

92 data files
FileTypeSize
ENCFF016NAD.bigWig bigWig (minus strand signal of unique reads) 87.2 MB
ENCFF040QTS.tsv tsv (gene quantifications) 9.5 MB
ENCFF042PCT.bam bam (transcriptome alignments) 10.0 GB
ENCFF045TFU.bigWig bigWig (minus strand signal of unique reads) 81.4 MB
ENCFF085KJK.bam bam (alignments) 5.1 GB
ENCFF096UFW.bigWig bigWig (minus strand signal of all reads) 96.6 MB
ENCFF167FPV.bigWig bigWig (minus strand signal of all reads) 89.1 MB
ENCFF178ISO.bigWig bigWig (minus strand signal of unique reads) 75.7 MB
ENCFF195RVB.tsv tsv (transcript quantifications) 29.9 MB
ENCFF213MHB.bigWig bigWig (minus strand signal of all reads) 82.4 MB
ENCFF221ICX.bam bam (alignments) 5.2 GB
ENCFF222PTD.bigWig bigWig (plus strand signal of all reads) 80.3 MB
ENCFF241HKE.bam bam (alignments) 6.5 GB
ENCFF251SLF.tsv tsv (gene quantifications) 10.4 MB
ENCFF272TUA.bigWig bigWig (plus strand signal of unique reads) 82.2 MB
ENCFF279PQZ.bam bam (alignments) 5.4 GB
ENCFF288LUB.bigWig bigWig (plus strand signal of unique reads) 83.4 MB
ENCFF295RIN.bigWig bigWig (plus strand signal of unique reads) 89.4 MB
ENCFF303FZE.bigWig bigWig (minus strand signal of unique reads) 79.6 MB
ENCFF316OCM.bigWig bigWig (minus strand signal of unique reads) 73.6 MB
ENCFF342FVM.bigWig bigWig (plus strand signal of unique reads) 77.5 MB
ENCFF359NWF.bam bam (alignments) 6.3 GB
ENCFF363JWV.tsv tsv (transcript quantifications) 25.4 MB
ENCFF387FWN.tsv tsv (gene quantifications) 9.5 MB
ENCFF387KJD.bam bam (alignments) 5.1 GB
ENCFF394NXC.bigWig bigWig (plus strand signal of all reads) 88.0 MB
ENCFF399YCB.bam bam (alignments) 4.4 GB
ENCFF407GZE.bigWig bigWig (minus strand signal of unique reads) 81.9 MB
ENCFF420KBW.bigWig bigWig (plus strand signal of unique reads) 81.5 MB
ENCFF424HTU.tar tar (differential splicing quantifications) 15.8 MB
ENCFF462NEE.bam bam (alignments) 5.3 GB
ENCFF465PYI.bigWig bigWig (plus strand signal of unique reads) 88.8 MB
ENCFF476NHX.bigWig bigWig (plus strand signal of all reads) 98.2 MB
ENCFF502RZK.tsv tsv (gene quantifications) 9.1 MB
ENCFF510MZY.bigWig bigWig (plus strand signal of all reads) 83.8 MB
ENCFF526KMK.bam bam (alignments) 5.4 GB
ENCFF527NDH.bigWig bigWig (minus strand signal of unique reads) 86.6 MB
ENCFF531IST.bigWig bigWig (minus strand signal of all reads) 80.3 MB
ENCFF533MDE.tsv tsv (transcript quantifications) 25.0 MB
ENCFF539QDD.bigWig bigWig (minus strand signal of unique reads) 75.7 MB
ENCFF553CLN.bigWig bigWig (plus strand signal of all reads) 98.2 MB
ENCFF553TPL.tsv tsv (gene quantifications) 9.1 MB
ENCFF555HRY.bigWig bigWig (plus strand signal of all reads) 81.6 MB
ENCFF557OXM.bigWig bigWig (minus strand signal of unique reads) 79.5 MB
ENCFF560XJQ.bigWig bigWig (plus strand signal of all reads) 90.5 MB
ENCFF565URM.bigWig bigWig (minus strand signal of all reads) 88.9 MB
ENCFF570SME.tar tar (differential splicing quantifications) 4.1 MB
ENCFF573GZZ.bigWig bigWig (minus strand signal of unique reads) 80.1 MB
ENCFF579OGD.bigWig bigWig (minus strand signal of all reads) 78.9 MB
ENCFF587XPS.tsv tsv (differential expression quantifications) 1.8 MB
ENCFF603LXK.fastq fastq (reads) 3.2 GB
ENCFF611EZW.bigWig bigWig (plus strand signal of unique reads) 75.7 MB
ENCFF627NQU.bigWig bigWig (plus strand signal of unique reads) 81.7 MB
ENCFF643BAR.bam bam (transcriptome alignments) 8.7 GB
ENCFF664KQH.bigWig bigWig (minus strand signal of all reads) 86.8 MB
ENCFF679MCW.fastq fastq (reads) 3.8 GB
ENCFF688RQJ.bigWig bigWig (minus strand signal of all reads) 86.3 MB
ENCFF697MZB.bigWig bigWig (minus strand signal of unique reads) 87.2 MB
ENCFF700UBW.tsv tsv (transcript quantifications) 25.4 MB
ENCFF704HEM.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF708FHO.bigWig bigWig (plus strand signal of unique reads) 82.2 MB
ENCFF725SFN.tsv tsv (transcript quantifications) 27.4 MB
ENCFF745AST.bam bam (transcriptome alignments) 8.4 GB
ENCFF752EVB.bigWig bigWig (minus strand signal of all reads) 89.0 MB
ENCFF754ZID.bigWig bigWig (plus strand signal of all reads) 90.4 MB
ENCFF765JIS.tsv tsv (gene quantifications) 10.4 MB
ENCFF769HTZ.tsv tsv (transcript quantifications) 25.0 MB
ENCFF775IDP.tsv tsv (differential expression quantifications) 4.3 MB
ENCFF776BLX.bigWig bigWig (minus strand signal of all reads) 96.6 MB
ENCFF776ILM.bigWig bigWig (minus strand signal of unique reads) 79.9 MB
ENCFF777TQV.bigWig bigWig (minus strand signal of all reads) 96.9 MB
ENCFF778HKX.bigWig bigWig (minus strand signal of all reads) 89.0 MB
ENCFF778QVC.bam bam (transcriptome alignments) 8.7 GB
ENCFF790WLY.tar tar (differential splicing quantifications) 3.4 MB
ENCFF796TFA.fastq fastq (reads) 3.2 GB
ENCFF838RDL.bam bam (alignments) 4.3 GB
ENCFF848UTL.bam bam (transcriptome alignments) 7.4 GB
ENCFF848XYL.bigWig bigWig (plus strand signal of unique reads) 84.1 MB
ENCFF851OYF.tsv tsv (transcript quantifications) 27.4 MB
ENCFF870PFY.bigWig bigWig (plus strand signal of all reads) 98.3 MB
ENCFF904XHI.bam bam (transcriptome alignments) 7.4 GB
ENCFF915TDR.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF916CGN.tsv tsv (transcript quantifications) 29.9 MB
ENCFF924TTV.bam bam (alignments) 6.5 GB
ENCFF936LDQ.bigWig bigWig (plus strand signal of unique reads) 89.4 MB
ENCFF949AVM.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF956DIE.bigWig bigWig (plus strand signal of all reads) 88.2 MB
ENCFF964OGF.bigWig bigWig (plus strand signal of all reads) 90.5 MB
ENCFF970UME.bam bam (alignments) 4.3 GB
ENCFF975WHD.bigWig bigWig (plus strand signal of all reads) 90.5 MB
ENCFF987FEZ.bigWig bigWig (plus strand signal of unique reads) 77.7 MB
ENCFF993GUS.fastq fastq (reads) 3.8 GB
ENCSR571VHI ENCSR · via encode_api

eCLIP experiment on K562 against HNRNPUL1

Homo sapiens

36 data files
FileTypeSize
ENCFF068NME.bigWig bigWig (minus strand signal of unique reads) 19.4 MB
ENCFF069PNP.bigWig bigWig (minus strand signal of unique reads) 15.3 MB
ENCFF087TZL.bed bed (peaks) 93.8 KB
ENCFF124SVG.bigBed bigBed (peaks) 1.1 MB
ENCFF128VDM.bigBed bigBed (peaks) 577.7 KB
ENCFF139PAT.bigWig bigWig (plus strand signal of unique reads) 20.1 MB
ENCFF270LHK.bam bam (alignments) 273.3 MB
ENCFF271DCB.bigBed bigBed (peaks) 2.2 MB
ENCFF296NTJ.bed bed (peaks) 256.7 KB
ENCFF297PQZ.bed bed (peaks) 1.3 MB
ENCFF342XLD.fastq fastq (reads) 257.7 MB
ENCFF355PIN.bigBed bigBed (peaks) 2.2 MB
ENCFF399OSD.bed bed (peaks) 110.3 KB
ENCFF426AQN.bam bam (alignments) 352.9 MB
ENCFF472FBT.bam bam (alignments) 349.7 MB
ENCFF490BSS.bed bed (peaks) 1.0 MB
ENCFF523RZH.bam bam (alignments) 269.6 MB
ENCFF530RHM.bigWig bigWig (minus strand signal of unique reads) 15.2 MB
ENCFF566RSU.bigBed bigBed (peaks) 315.8 KB
ENCFF621CZT.fastq fastq (reads) 244.8 MB
ENCFF649VUE.bigBed bigBed (peaks) 1.3 MB
ENCFF658VCP.fastq fastq (reads) 344.5 MB
ENCFF725XMA.bed bed (peaks) 304.5 KB
ENCFF734NGD.bed bed (peaks) 1.0 MB
ENCFF821EXR.bed bed (peaks) 5.2 KB
ENCFF831UXT.fastq fastq (reads) 393.9 MB
ENCFF850KEG.bigWig bigWig (plus strand signal of unique reads) 15.8 MB
ENCFF889AWX.bed bed (peaks) 5.5 KB
ENCFF901WPA.bigWig bigWig (plus strand signal of unique reads) 20.2 MB
ENCFF933LJZ.bed bed (peaks) 1.4 MB
ENCFF948BMD.bigWig bigWig (plus strand signal of unique reads) 16.0 MB
ENCFF949HCV.bigBed bigBed (peaks) 1.7 MB
ENCFF962XXS.bigBed bigBed (peaks) 660.0 KB
ENCFF976FPE.bigBed bigBed (peaks) 1.7 MB
ENCFF977ZRH.bigBed bigBed (peaks) 283.5 KB
ENCFF994QNK.bigWig bigWig (minus strand signal of unique reads) 19.3 MB
ENCSR663NRA ENCSR · via encode_api

eCLIP experiment on K562 against ZRANB2

Homo sapiens

36 data files
FileTypeSize
ENCFF012KZQ.bigBed bigBed (peaks) 1.0 MB
ENCFF029DQU.bigBed bigBed (peaks) 2.0 MB
ENCFF058OOW.bed bed (peaks) 9.4 KB
ENCFF114CSR.bigBed bigBed (peaks) 861.8 KB
ENCFF157TJP.bam bam (alignments) 61.4 MB
ENCFF175IFY.bigBed bigBed (peaks) 1.5 MB
ENCFF184GOJ.bigBed bigBed (peaks) 466.0 KB
ENCFF261EWN.bigBed bigBed (peaks) 1.2 MB
ENCFF263QPA.bed bed (peaks) 889.6 KB
ENCFF265MNS.bigWig bigWig (minus strand signal of unique reads) 6.7 MB
ENCFF267NIR.bigBed bigBed (peaks) 485.6 KB
ENCFF274LYE.bigWig bigWig (plus strand signal of unique reads) 9.2 MB
ENCFF348UPB.bam bam (alignments) 60.3 MB
ENCFF350ANF.bam bam (alignments) 155.7 MB
ENCFF360KVK.bigWig bigWig (minus strand signal of unique reads) 6.9 MB
ENCFF377TSD.bigBed bigBed (peaks) 1.2 MB
ENCFF435TFT.fastq fastq (reads) 705.4 MB
ENCFF464HWD.bed bed (peaks) 644.9 KB
ENCFF499ZJU.bigBed bigBed (peaks) 1.5 MB
ENCFF578TMK.bed bed (peaks) 640.5 KB
ENCFF588XPN.bam bam (alignments) 149.1 MB
ENCFF681RRF.fastq fastq (reads) 642.3 MB
ENCFF696QAI.bed bed (peaks) 196.7 KB
ENCFF704VCA.bigWig bigWig (plus strand signal of unique reads) 3.7 MB
ENCFF709ENB.bed bed (peaks) 915.6 KB
ENCFF722NAD.bigWig bigWig (minus strand signal of unique reads) 3.5 MB
ENCFF751JSR.bigWig bigWig (plus strand signal of unique reads) 3.7 MB
ENCFF755WML.bed bed (peaks) 509.9 KB
ENCFF889GSE.bigWig bigWig (plus strand signal of unique reads) 9.6 MB
ENCFF897MPT.fastq fastq (reads) 738.0 MB
ENCFF927FBB.bed bed (peaks) 223.9 KB
ENCFF955OGW.fastq fastq (reads) 587.7 MB
ENCFF958SCV.bigWig bigWig (minus strand signal of unique reads) 3.4 MB
ENCFF959QBQ.bed bed (peaks) 539.9 KB
ENCFF982GEG.bed bed (peaks) 9.2 KB
ENCFF997ZOA.bigBed bigBed (peaks) 2.1 MB
ENCSR575QYE ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) pulldown experiment against KHDRBS2

15 data files
FileTypeSize
ENCFF026GXV.tsv tsv (library fraction) 265.2 KB
ENCFF083OIG.tsv tsv (enrichment) 168.0 KB
ENCFF192FTT.tsv tsv (library fraction) 64.5 KB
ENCFF193FIH.tsv tsv (enrichment) 386.0 B
ENCFF193NAZ.tsv tsv (library fraction) 1.1 MB
ENCFF234WAZ.fastq fastq (reads) 657.5 MB
ENCFF276YSZ.fastq fastq (reads) 580.9 MB
ENCFF388TRM.tsv tsv (enrichment) 41.0 KB
ENCFF456XDP.tsv tsv (enrichment) 10.0 KB
ENCFF465ZHS.tsv tsv (enrichment) 688.1 KB
ENCFF715SQI.bed bed (peaks) 109.9 KB
ENCFF725OYS.fastq fastq (reads) 609.4 MB
ENCFF803LHT.fastq fastq (reads) 615.9 MB
ENCFF859PTL.tsv tsv (library fraction) 15.4 KB
ENCFF903TJA.fastq fastq (reads) 629.4 MB
ENCSR927XDB ENCSR · via encode_api

eCLIP control experiment on K562 against MTPAP

Homo sapiens

8 data files
FileTypeSize
ENCFF088TKT.fastq fastq (reads) 628.2 MB
ENCFF358UNB.bam bam (alignments) 538.4 MB
ENCFF464CQX.bigWig bigWig (plus strand signal of unique reads) 26.4 MB
ENCFF540KPA.bigWig bigWig (minus strand signal of unique reads) 25.5 MB
ENCFF803XPM.fastq fastq (reads) 664.5 MB
ENCFF810MJN.bigWig bigWig (minus strand signal of unique reads) 25.1 MB
ENCFF880NLA.bam bam (alignments) 546.6 MB
ENCFF883FHA.bigWig bigWig (plus strand signal of unique reads) 26.0 MB
ENCSR368NMO ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) pulldown experiment against HNRNPK

13 data files
FileTypeSize
ENCFF004OKN.fastq fastq (reads) 292.5 MB
ENCFF261ZHZ.fastq fastq (reads) 231.3 MB
ENCFF281CNE.fastq fastq (reads) 245.1 MB
ENCFF298QFN.bed bed (peaks) 235.1 KB
ENCFF346XPF.tsv tsv (enrichment) 168.0 KB
ENCFF574ANJ.tsv tsv (enrichment) 10.0 KB
ENCFF595IBV.tsv tsv (library fraction) 15.2 KB
ENCFF674RCB.fastq fastq (reads) 285.2 MB
ENCFF715DIL.tsv tsv (enrichment) 41.0 KB
ENCFF732XFP.fastq fastq (reads) 195.9 MB
ENCFF775OKJ.tsv tsv (library fraction) 265.1 KB
ENCFF813TVN.bed bed (peaks) 426.0 KB
ENCFF850EVL.tsv tsv (library fraction) 64.0 KB
ENCSR339FUY ENCSR · via encode_api

eCLIP experiment on HepG2 against PCBP2

Homo sapiens

36 data files
FileTypeSize
ENCFF023OLB.bigWig bigWig (plus strand signal of unique reads) 20.5 MB
ENCFF024BBA.bigBed bigBed (peaks) 1.4 MB
ENCFF032HWP.bam bam (alignments) 234.2 MB
ENCFF074AQN.bed bed (peaks) 1.7 MB
ENCFF082XYR.bigBed bigBed (peaks) 3.0 MB
ENCFF176BGN.bigBed bigBed (peaks) 3.5 MB
ENCFF266KGE.bigWig bigWig (minus strand signal of unique reads) 14.4 MB
ENCFF282VHP.bigBed bigBed (peaks) 3.0 MB
ENCFF307HNT.bigBed bigBed (peaks) 3.5 MB
ENCFF322DXB.bed bed (peaks) 1.4 MB
ENCFF332NKK.fastq fastq (reads) 285.6 MB
ENCFF359KSX.fastq fastq (reads) 209.4 MB
ENCFF377RAB.bigBed bigBed (peaks) 2.7 MB
ENCFF412VMG.bed bed (peaks) 725.4 KB
ENCFF439OHA.bed bed (peaks) 843.5 KB
ENCFF454MWQ.bed bed (peaks) 1.7 MB
ENCFF488GID.fastq fastq (reads) 198.8 MB
ENCFF514GGZ.bed bed (peaks) 1.4 MB
ENCFF547AHN.bam bam (alignments) 229.1 MB
ENCFF556BWC.bigWig bigWig (minus strand signal of unique reads) 19.3 MB
ENCFF560CDL.bed bed (peaks) 202.9 KB
ENCFF585NYG.bigBed bigBed (peaks) 951.4 KB
ENCFF629OCF.bigBed bigBed (peaks) 3.3 MB
ENCFF642GNE.bed bed (peaks) 201.9 KB
ENCFF679YWY.bigWig bigWig (plus strand signal of unique reads) 20.2 MB
ENCFF803QKO.bam bam (alignments) 424.1 MB
ENCFF812IPR.bam bam (alignments) 434.7 MB
ENCFF822CXV.bigWig bigWig (plus strand signal of unique reads) 15.4 MB
ENCFF842LPQ.bigWig bigWig (plus strand signal of unique reads) 15.2 MB
ENCFF868AYD.bed bed (peaks) 316.3 KB
ENCFF868HYK.bigBed bigBed (peaks) 1.8 MB
ENCFF870MFW.bigBed bigBed (peaks) 721.1 KB
ENCFF877CWI.bed bed (peaks) 385.5 KB
ENCFF893VXG.fastq fastq (reads) 276.4 MB
ENCFF919LKK.bigWig bigWig (minus strand signal of unique reads) 14.6 MB
ENCFF933OSZ.bigWig bigWig (minus strand signal of unique reads) 19.6 MB
ENCSR099KAK ENCSR · via encode_api

eCLIP control experiment on HepG2 against DDX6

Homo sapiens

8 data files
FileTypeSize
ENCFF158NBG.fastq fastq (reads) 652.1 MB
ENCFF198SGP.bigWig bigWig (minus strand signal of unique reads) 19.6 MB
ENCFF219DHH.fastq fastq (reads) 695.1 MB
ENCFF363WVY.bigWig bigWig (minus strand signal of unique reads) 19.3 MB
ENCFF463LHG.bam bam (alignments) 422.7 MB
ENCFF523EZL.bigWig bigWig (plus strand signal of unique reads) 20.1 MB
ENCFF686MTX.bam bam (alignments) 415.6 MB
ENCFF986YDO.bigWig bigWig (plus strand signal of unique reads) 19.8 MB
ENCSR180EJY ENCSR · via encode_api

eCLIP control experiment on K562 against DDX55

Homo sapiens

8 data files
FileTypeSize
ENCFF034NUD.bam bam (alignments) 503.7 MB
ENCFF150UTZ.bigWig bigWig (plus strand signal of unique reads) 23.3 MB
ENCFF216XJE.fastq fastq (reads) 574.7 MB
ENCFF252ZZN.bam bam (alignments) 512.0 MB
ENCFF393RHA.bigWig bigWig (plus strand signal of unique reads) 22.9 MB
ENCFF920PUO.bigWig bigWig (minus strand signal of unique reads) 22.0 MB
ENCFF971JKG.fastq fastq (reads) 607.6 MB
ENCFF976KIN.bigWig bigWig (minus strand signal of unique reads) 22.4 MB
ENCSR999WKT ENCSR · via encode_api

eCLIP experiment on K562 against DDX24

Homo sapiens

36 data files
FileTypeSize
ENCFF006KFT.bed bed (peaks) 1.1 MB
ENCFF023VLF.bam bam (alignments) 166.2 MB
ENCFF066CRM.bigBed bigBed (peaks) 2.3 MB
ENCFF091DPF.fastq fastq (reads) 400.8 MB
ENCFF097YVI.bed bed (peaks) 278.4 KB
ENCFF118QEP.bed bed (peaks) 302.5 KB
ENCFF142OCF.bed bed (peaks) 1.1 MB
ENCFF153DCN.bigWig bigWig (plus strand signal of unique reads) 11.5 MB
ENCFF165JUU.bigBed bigBed (peaks) 3.1 MB
ENCFF232GPA.bigBed bigBed (peaks) 2.9 MB
ENCFF240HDP.bam bam (alignments) 169.6 MB
ENCFF262QSQ.bigBed bigBed (peaks) 598.1 KB
ENCFF279DVI.bigBed bigBed (peaks) 634.0 KB
ENCFF279IBQ.bigWig bigWig (minus strand signal of unique reads) 11.1 MB
ENCFF280ZCF.bam bam (alignments) 187.4 MB
ENCFF342NDL.bigWig bigWig (minus strand signal of unique reads) 10.1 MB
ENCFF354NUG.bed bed (peaks) 1.1 MB
ENCFF357VDQ.bigWig bigWig (plus strand signal of unique reads) 10.3 MB
ENCFF379YES.bed bed (peaks) 953.9 KB
ENCFF442UZB.bigBed bigBed (peaks) 1.9 MB
ENCFF517ZWJ.bigBed bigBed (peaks) 2.4 MB
ENCFF533TMN.bigBed bigBed (peaks) 2.3 MB
ENCFF536KEA.bigBed bigBed (peaks) 2.2 MB
ENCFF537KWB.bed bed (peaks) 205.8 KB
ENCFF661UCF.fastq fastq (reads) 548.8 MB
ENCFF692JAV.fastq fastq (reads) 548.6 MB
ENCFF701ZYH.bed bed (peaks) 1.1 MB
ENCFF753RBY.bigWig bigWig (plus strand signal of unique reads) 11.4 MB
ENCFF768FYI.bam bam (alignments) 184.0 MB
ENCFF792GUZ.bigWig bigWig (minus strand signal of unique reads) 10.0 MB
ENCFF792WPY.bed bed (peaks) 205.4 KB
ENCFF795YLW.fastq fastq (reads) 393.2 MB
ENCFF864YFA.bed bed (peaks) 902.4 KB
ENCFF880YOU.bigWig bigWig (minus strand signal of unique reads) 11.2 MB
ENCFF940RTF.bigWig bigWig (plus strand signal of unique reads) 10.4 MB
ENCFF972OPC.bigBed bigBed (peaks) 1.9 MB
ENCSR258QKO ENCSR · via encode_api

eCLIP experiment on K562 against XRCC6

Homo sapiens

36 data files
FileTypeSize
ENCFF007DHU.bed bed (peaks) 1.4 MB
ENCFF007SZX.bigBed bigBed (peaks) 3.9 MB
ENCFF013AAR.bed bed (peaks) 591.8 KB
ENCFF041HAI.fastq fastq (reads) 809.6 MB
ENCFF109SMA.bigBed bigBed (peaks) 3.0 MB
ENCFF267UFL.bigBed bigBed (peaks) 432.4 KB
ENCFF286MJI.bigWig bigWig (plus strand signal of unique reads) 14.6 MB
ENCFF290QYC.fastq fastq (reads) 839.0 MB
ENCFF293KBS.bed bed (peaks) 1.9 MB
ENCFF297MTE.bed bed (peaks) 1.4 MB
ENCFF303IAU.bed bed (peaks) 191.4 KB
ENCFF325WWS.bigBed bigBed (peaks) 2.9 MB
ENCFF329VBT.bed bed (peaks) 17.8 KB
ENCFF337RLS.bam bam (alignments) 258.8 MB
ENCFF338KRR.bigBed bigBed (peaks) 2.0 MB
ENCFF340LSX.bigWig bigWig (plus strand signal of unique reads) 14.4 MB
ENCFF352XMI.bigWig bigWig (minus strand signal of unique reads) 14.1 MB
ENCFF359NEI.bed bed (peaks) 175.1 KB
ENCFF455DRN.bam bam (alignments) 349.9 MB
ENCFF456IVU.bigWig bigWig (plus strand signal of unique reads) 18.1 MB
ENCFF467LDJ.bigWig bigWig (plus strand signal of unique reads) 18.4 MB
ENCFF512THN.bigWig bigWig (minus strand signal of unique reads) 17.4 MB
ENCFF561EKF.bigBed bigBed (peaks) 1.9 MB
ENCFF564IUM.bed bed (peaks) 1.9 MB
ENCFF614PTY.bigBed bigBed (peaks) 1.3 MB
ENCFF616DRD.bigBed bigBed (peaks) 3.9 MB
ENCFF626IJP.bigBed bigBed (peaks) 1.0 MB
ENCFF636DUC.bam bam (alignments) 266.1 MB
ENCFF677MAD.bigWig bigWig (minus strand signal of unique reads) 17.7 MB
ENCFF694JFS.bigWig bigWig (minus strand signal of unique reads) 13.8 MB
ENCFF701NLR.fastq fastq (reads) 914.0 MB
ENCFF702WLO.bigBed bigBed (peaks) 454.4 KB
ENCFF727MET.bam bam (alignments) 359.1 MB
ENCFF807BTL.bed bed (peaks) 542.4 KB
ENCFF830OQL.fastq fastq (reads) 942.1 MB
ENCFF958GMP.bed bed (peaks) 18.1 KB
ENCSR893NWB ENCSR · via encode_api

eCLIP experiment on HepG2 against GRWD1

Homo sapiens

36 data files
FileTypeSize
ENCFF007UFF.bigWig bigWig (minus strand signal of unique reads) 36.3 MB
ENCFF012TOL.bed bed (peaks) 706.9 KB
ENCFF013JOY.bigWig bigWig (plus strand signal of unique reads) 37.3 MB
ENCFF024JAX.bigBed bigBed (peaks) 6.7 MB
ENCFF035EZA.bigBed bigBed (peaks) 7.1 MB
ENCFF045SJZ.bigWig bigWig (minus strand signal of unique reads) 37.3 MB
ENCFF113GFP.bigBed bigBed (peaks) 4.6 MB
ENCFF119TWW.bigBed bigBed (peaks) 1.7 MB
ENCFF144KIK.bigWig bigWig (plus strand signal of unique reads) 38.0 MB
ENCFF155KCD.bigBed bigBed (peaks) 1.4 MB
ENCFF159MMZ.bed bed (peaks) 496.8 KB
ENCFF176DKY.bigWig bigWig (minus strand signal of unique reads) 37.0 MB
ENCFF227BWP.bigBed bigBed (peaks) 5.8 MB
ENCFF321ARP.bed bed (peaks) 2.1 MB
ENCFF421MOI.bigWig bigWig (minus strand signal of unique reads) 36.3 MB
ENCFF429WEY.bigBed bigBed (peaks) 5.8 MB
ENCFF449TUS.bam bam (alignments) 961.6 MB
ENCFF451BKG.fastq fastq (reads) 641.0 MB
ENCFF459XDE.bam bam (alignments) 935.6 MB
ENCFF500BLJ.fastq fastq (reads) 682.2 MB
ENCFF538YNL.bed bed (peaks) 2.0 MB
ENCFF591FGE.bam bam (alignments) 933.9 MB
ENCFF689GDA.bed bed (peaks) 3.1 MB
ENCFF692OWU.bigWig bigWig (plus strand signal of unique reads) 37.3 MB
ENCFF713QGM.bed bed (peaks) 486.4 KB
ENCFF735YNV.bed bed (peaks) 3.1 MB
ENCFF790FPO.bigBed bigBed (peaks) 7.2 MB
ENCFF796NLW.bed bed (peaks) 654.3 KB
ENCFF832ZVT.bigBed bigBed (peaks) 4.8 MB
ENCFF860FQU.bigWig bigWig (plus strand signal of unique reads) 38.4 MB
ENCFF869UTD.bam bam (alignments) 895.4 MB
ENCFF874PLO.fastq fastq (reads) 731.3 MB
ENCFF886MOW.bed bed (peaks) 3.1 MB
ENCFF933DLG.fastq fastq (reads) 681.5 MB
ENCFF964TTL.bigBed bigBed (peaks) 7.2 MB
ENCFF971KUU.bed bed (peaks) 3.1 MB
ENCSR657TZZ ENCSR · via encode_api

eCLIP experiment on K562 against ZNF622

Homo sapiens

36 data files
FileTypeSize
ENCFF005MIK.fastq fastq (reads) 532.7 MB
ENCFF028GDJ.bigBed bigBed (peaks) 6.2 MB
ENCFF037BNT.bed bed (peaks) 333.5 KB
ENCFF057UDS.bigBed bigBed (peaks) 4.2 MB
ENCFF087IME.bigWig bigWig (minus strand signal of unique reads) 20.8 MB
ENCFF116STJ.bigBed bigBed (peaks) 5.8 MB
ENCFF134QVX.bigWig bigWig (minus strand signal of unique reads) 20.8 MB
ENCFF167ADU.bigWig bigWig (plus strand signal of unique reads) 21.5 MB
ENCFF177JVW.bed bed (peaks) 2.3 MB
ENCFF177VMJ.bigWig bigWig (minus strand signal of unique reads) 20.0 MB
ENCFF216ACB.bam bam (alignments) 483.3 MB
ENCFF241RKD.fastq fastq (reads) 996.3 MB
ENCFF259ZHT.bam bam (alignments) 478.8 MB
ENCFF280WXN.bigBed bigBed (peaks) 5.0 MB
ENCFF282VKB.bed bed (peaks) 2.3 MB
ENCFF285IGP.bed bed (peaks) 335.1 KB
ENCFF356JJT.bigWig bigWig (minus strand signal of unique reads) 21.3 MB
ENCFF388PIX.bam bam (alignments) 495.0 MB
ENCFF389TCM.bed bed (peaks) 2.6 MB
ENCFF402TGJ.bigBed bigBed (peaks) 1.3 MB
ENCFF414WMX.bigBed bigBed (peaks) 4.1 MB
ENCFF416UBT.bigBed bigBed (peaks) 4.3 MB
ENCFF463IUW.bed bed (peaks) 1.8 MB
ENCFF464KEI.bed bed (peaks) 1.8 MB
ENCFF525LEL.bigBed bigBed (peaks) 5.0 MB
ENCFF529AAI.fastq fastq (reads) 505.6 MB
ENCFF554YEF.bigWig bigWig (plus strand signal of unique reads) 21.5 MB
ENCFF567UXH.bed bed (peaks) 2.6 MB
ENCFF727FDI.bigWig bigWig (plus strand signal of unique reads) 22.0 MB
ENCFF780TPJ.bigBed bigBed (peaks) 1.4 MB
ENCFF799JDN.bigBed bigBed (peaks) 4.3 MB
ENCFF840XXQ.bed bed (peaks) 648.8 KB
ENCFF869NWQ.bigWig bigWig (plus strand signal of unique reads) 20.7 MB
ENCFF889PGE.bed bed (peaks) 611.2 KB
ENCFF890BOX.fastq fastq (reads) 941.4 MB
ENCFF934JXI.bam bam (alignments) 458.7 MB
ENCSR290VLT ENCSR · via encode_api

eCLIP experiment on HepG2 against MATR3

Homo sapiens

30 data files
FileTypeSize
ENCFF048GLZ.bigWig bigWig (plus strand signal of unique reads) 26.7 MB
ENCFF104ASV.bed bed (peaks) 544.4 KB
ENCFF171PTV.bed bed (peaks) 1.7 MB
ENCFF177BKV.bigWig bigWig (minus strand signal of unique reads) 19.5 MB
ENCFF223SWJ.bigWig bigWig (plus strand signal of unique reads) 18.9 MB
ENCFF240TER.bigBed bigBed (peaks) 779.2 KB
ENCFF288OTG.bed bed (peaks) 371.6 KB
ENCFF298YFY.bed bed (peaks) 142.5 KB
ENCFF312MNB.bigWig bigWig (plus strand signal of unique reads) 26.1 MB
ENCFF317UON.bigBed bigBed (peaks) 1.2 MB
ENCFF333CUY.bed bed (peaks) 1.8 MB
ENCFF364CXG.bigWig bigWig (minus strand signal of unique reads) 18.2 MB
ENCFF381UWC.bigWig bigWig (plus strand signal of unique reads) 20.4 MB
ENCFF453ITV.fastq fastq (reads) 358.5 MB
ENCFF455FVG.bigWig bigWig (minus strand signal of unique reads) 26.1 MB
ENCFF503HHO.bigWig bigWig (minus strand signal of unique reads) 25.5 MB
ENCFF527QLM.fastq fastq (reads) 384.7 MB
ENCFF587KKM.bed bed (peaks) 139.4 KB
ENCFF590CMG.bigBed bigBed (peaks) 4.5 MB
ENCFF601NWD.bam bam (alignments) 334.7 MB
ENCFF619UHD.bam bam (alignments) 504.4 MB
ENCFF699IQH.bigBed bigBed (peaks) 3.4 MB
ENCFF719KGK.bam bam (alignments) 361.3 MB
ENCFF764PHF.bam bam (alignments) 520.9 MB
ENCFF812QXZ.bigBed bigBed (peaks) 4.6 MB
ENCFF874BAL.bed bed (peaks) 2.5 MB
ENCFF882SWK.bed bed (peaks) 2.4 MB
ENCFF891MFI.fastq fastq (reads) 371.7 MB
ENCFF927IJF.fastq fastq (reads) 374.1 MB
ENCFF965ZCA.bigBed bigBed (peaks) 3.5 MB
ENCSR513NDD ENCSR · via encode_api

eCLIP experiment on HepG2 against SRSF7

Homo sapiens

36 data files
FileTypeSize
ENCFF063OHJ.bigBed bigBed (peaks) 1.8 MB
ENCFF106PSH.bam bam (alignments) 202.5 MB
ENCFF130DJA.bed bed (peaks) 182.7 KB
ENCFF137MKV.bigWig bigWig (minus strand signal of unique reads) 6.4 MB
ENCFF180HOJ.bed bed (peaks) 423.8 KB
ENCFF250WLO.bed bed (peaks) 156.3 KB
ENCFF275DJT.bigBed bigBed (peaks) 353.7 KB
ENCFF295APP.bigBed bigBed (peaks) 393.2 KB
ENCFF317HGW.bed bed (peaks) 9.9 KB
ENCFF379FWK.bigWig bigWig (minus strand signal of unique reads) 6.4 MB
ENCFF410CCN.bigBed bigBed (peaks) 1.8 MB
ENCFF420KON.bigBed bigBed (peaks) 1.7 MB
ENCFF436ZEJ.bigBed bigBed (peaks) 878.7 KB
ENCFF459OEQ.bigWig bigWig (plus strand signal of unique reads) 12.9 MB
ENCFF546FQZ.bigWig bigWig (plus strand signal of unique reads) 6.6 MB
ENCFF550GIT.bigWig bigWig (minus strand signal of unique reads) 12.7 MB
ENCFF558CNE.bam bam (alignments) 110.8 MB
ENCFF578OMQ.fastq fastq (reads) 128.6 MB
ENCFF593CEQ.bed bed (peaks) 610.5 KB
ENCFF605JFT.fastq fastq (reads) 246.6 MB
ENCFF610RRL.bigBed bigBed (peaks) 1.0 MB
ENCFF619RHU.fastq fastq (reads) 239.2 MB
ENCFF632LPF.bam bam (alignments) 110.8 MB
ENCFF663IBZ.bigWig bigWig (plus strand signal of unique reads) 6.6 MB
ENCFF729MSV.fastq fastq (reads) 123.8 MB
ENCFF743ZXA.bam bam (alignments) 203.2 MB
ENCFF744KOY.bigBed bigBed (peaks) 1.1 MB
ENCFF771UQF.bigBed bigBed (peaks) 1.1 MB
ENCFF774EDY.bed bed (peaks) 1022.4 KB
ENCFF806OPN.bed bed (peaks) 529.6 KB
ENCFF850SVN.bigWig bigWig (minus strand signal of unique reads) 12.6 MB
ENCFF865AZP.bed bed (peaks) 9.9 KB
ENCFF892NZC.bigBed bigBed (peaks) 2.2 MB
ENCFF913UPA.bed bed (peaks) 606.1 KB
ENCFF924VSG.bigWig bigWig (plus strand signal of unique reads) 13.0 MB
ENCFF944XFZ.bed bed (peaks) 1.0 MB
ENCSR485QCG ENCSR · via encode_api

eCLIP experiment on HepG2 against BCCIP

Homo sapiens

36 data files
FileTypeSize
ENCFF005HRW.bam bam (alignments) 201.5 MB
ENCFF018YJB.bed bed (peaks) 564.0 KB
ENCFF036HJS.bigWig bigWig (plus strand signal of unique reads) 13.7 MB
ENCFF081LVD.bam bam (alignments) 200.7 MB
ENCFF134LIU.bed bed (peaks) 12.8 KB
ENCFF178AAX.bigBed bigBed (peaks) 1.9 MB
ENCFF184OOX.bigWig bigWig (plus strand signal of unique reads) 13.7 MB
ENCFF193BBD.bigBed bigBed (peaks) 2.2 MB
ENCFF224GAC.bigBed bigBed (peaks) 1.1 MB
ENCFF287LMI.fastq fastq (reads) 218.1 MB
ENCFF292ANE.fastq fastq (reads) 226.7 MB
ENCFF296TYQ.bed bed (peaks) 1.3 MB
ENCFF300RFO.fastq fastq (reads) 220.1 MB
ENCFF377WFP.bed bed (peaks) 1.2 MB
ENCFF413RNE.bigBed bigBed (peaks) 511.5 KB
ENCFF421TBP.bigWig bigWig (minus strand signal of unique reads) 11.9 MB
ENCFF445THX.bigWig bigWig (minus strand signal of unique reads) 13.2 MB
ENCFF570UTN.bed bed (peaks) 548.2 KB
ENCFF616LPV.bed bed (peaks) 190.7 KB
ENCFF622JMI.bigBed bigBed (peaks) 2.2 MB
ENCFF624RYV.bigWig bigWig (plus strand signal of unique reads) 12.3 MB
ENCFF627YDB.bed bed (peaks) 1.3 MB
ENCFF634VRY.bigWig bigWig (minus strand signal of unique reads) 13.2 MB
ENCFF690EFW.bam bam (alignments) 171.7 MB
ENCFF698TRT.bed bed (peaks) 1.1 MB
ENCFF707GVV.bigBed bigBed (peaks) 2.1 MB
ENCFF731PYG.bam bam (alignments) 172.3 MB
ENCFF759IVI.bigBed bigBed (peaks) 2.0 MB
ENCFF842EFT.bed bed (peaks) 12.2 KB
ENCFF848EIH.bigWig bigWig (minus strand signal of unique reads) 11.9 MB
ENCFF887NCX.bigBed bigBed (peaks) 1.9 MB
ENCFF896YHT.fastq fastq (reads) 230.3 MB
ENCFF931YOU.bigBed bigBed (peaks) 471.6 KB
ENCFF975TTN.bigWig bigWig (plus strand signal of unique reads) 12.3 MB
ENCFF976DBV.bed bed (peaks) 211.5 KB
ENCFF993SQF.bigBed bigBed (peaks) 1.0 MB
ENCSR716WZH ENCSR · via encode_api

shRNA knockdown against FASTKD2 in HepG2 cells followed by RNA-seq. (FASTKD2 BGHLV14)

Homo sapiens

92 data files
FileTypeSize
ENCFF030DCR.bigWig bigWig (minus strand signal of unique reads) 62.8 MB
ENCFF044ODU.tar tar (differential splicing quantifications) 3.5 MB
ENCFF046SFM.bigWig bigWig (minus strand signal of unique reads) 68.9 MB
ENCFF065MAH.bigWig bigWig (minus strand signal of all reads) 82.9 MB
ENCFF073HCR.bigWig bigWig (plus strand signal of all reads) 78.7 MB
ENCFF093IOP.tsv tsv (transcript quantifications) 27.3 MB
ENCFF093UPJ.bam bam (transcriptome alignments) 6.5 GB
ENCFF094FXF.tsv tsv (transcript quantifications) 29.8 MB
ENCFF110FMF.tsv tsv (gene quantifications) 10.4 MB
ENCFF118DEC.bam bam (alignments) 3.3 GB
ENCFF118WHD.bigWig bigWig (plus strand signal of all reads) 76.9 MB
ENCFF120KNQ.bam bam (alignments) 3.7 GB
ENCFF144PMD.bam bam (alignments) 3.7 GB
ENCFF166ZJI.bigWig bigWig (plus strand signal of all reads) 71.1 MB
ENCFF182NVW.bigWig bigWig (plus strand signal of all reads) 76.2 MB
ENCFF204LDQ.tar tar (differential splicing quantifications) 3.0 MB
ENCFF224BPK.bam bam (alignments) 3.4 GB
ENCFF228UGF.bigWig bigWig (minus strand signal of all reads) 77.4 MB
ENCFF242JFL.tar tar (differential splicing quantifications) 14.9 MB
ENCFF246AUU.bam bam (transcriptome alignments) 5.7 GB
ENCFF247VTJ.tsv tsv (gene quantifications) 9.4 MB
ENCFF254ELN.bigWig bigWig (minus strand signal of unique reads) 68.2 MB
ENCFF254ZGZ.bigWig bigWig (plus strand signal of unique reads) 67.7 MB
ENCFF298IUA.bigWig bigWig (plus strand signal of all reads) 77.6 MB
ENCFF306GKG.bigWig bigWig (minus strand signal of unique reads) 74.9 MB
ENCFF310NNN.bigWig bigWig (plus strand signal of all reads) 72.2 MB
ENCFF323BCM.bigWig bigWig (minus strand signal of unique reads) 74.1 MB
ENCFF330THZ.bam bam (alignments) 3.9 GB
ENCFF339CZM.tsv tsv (gene quantifications) 10.4 MB
ENCFF413FSS.bigWig bigWig (minus strand signal of all reads) 70.0 MB
ENCFF423QBB.bigWig bigWig (plus strand signal of unique reads) 72.6 MB
ENCFF452HBC.tsv tsv (transcript quantifications) 24.9 MB
ENCFF454TSR.bigWig bigWig (minus strand signal of all reads) 76.5 MB
ENCFF458CPO.bam bam (alignments) 4.1 GB
ENCFF464HGY.bigWig bigWig (plus strand signal of unique reads) 70.5 MB
ENCFF469FSV.bam bam (alignments) 4.5 GB
ENCFF494VSJ.bam bam (transcriptome alignments) 5.8 GB
ENCFF519QGJ.bigWig bigWig (plus strand signal of unique reads) 73.8 MB
ENCFF539IDL.bigWig bigWig (minus strand signal of unique reads) 71.1 MB
ENCFF556RMN.bigWig bigWig (plus strand signal of unique reads) 64.5 MB
ENCFF559JCM.fastq fastq (reads) 2.5 GB
ENCFF571IGR.tsv tsv (differential expression quantifications) 4.2 MB
ENCFF590YHD.tsv tsv (gene quantifications) 9.1 MB
ENCFF595PCB.tsv tsv (differential expression quantifications) 5.7 MB
ENCFF599JLI.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF603ETM.bigWig bigWig (minus strand signal of unique reads) 72.1 MB
ENCFF606HJQ.bam bam (transcriptome alignments) 5.2 GB
ENCFF635LMI.bigWig bigWig (plus strand signal of all reads) 74.8 MB
ENCFF644JRD.tsv tsv (transcript quantifications) 29.8 MB
ENCFF649GRK.bigWig bigWig (minus strand signal of unique reads) 68.8 MB
ENCFF657UCW.tsv tsv (transcript quantifications) 24.9 MB
ENCFF658CYJ.bigWig bigWig (plus strand signal of unique reads) 70.0 MB
ENCFF665FMJ.tsv tsv (transcript quantifications) 27.3 MB
ENCFF667ZCR.bam bam (transcriptome alignments) 5.2 GB
ENCFF668JFK.bigWig bigWig (plus strand signal of unique reads) 66.8 MB
ENCFF677PYW.bigWig bigWig (plus strand signal of unique reads) 76.7 MB
ENCFF690HZR.fastq fastq (reads) 2.2 GB
ENCFF727ACR.bigWig bigWig (plus strand signal of unique reads) 75.8 MB
ENCFF727HDY.bigWig bigWig (minus strand signal of unique reads) 65.4 MB
ENCFF733JZB.tsv tsv (gene quantifications) 9.4 MB
ENCFF750CMM.tsv tsv (transcript quantifications) 25.3 MB
ENCFF754DEJ.bam bam (alignments) 4.1 GB
ENCFF772XKY.bigWig bigWig (plus strand signal of all reads) 83.2 MB
ENCFF774OFQ.tsv tsv (gene quantifications) 9.1 MB
ENCFF792EZN.bam bam (alignments) 3.3 GB
ENCFF799UDK.bigWig bigWig (minus strand signal of all reads) 75.2 MB
ENCFF802PNI.bigWig bigWig (minus strand signal of unique reads) 68.8 MB
ENCFF805WNX.bigWig bigWig (plus strand signal of all reads) 67.9 MB
ENCFF816JOV.bigWig bigWig (minus strand signal of unique reads) 66.1 MB
ENCFF836UAI.bigWig bigWig (plus strand signal of unique reads) 70.4 MB
ENCFF850NVI.bigWig bigWig (minus strand signal of all reads) 66.6 MB
ENCFF850TNI.bam bam (alignments) 4.3 GB
ENCFF867FMM.bam bam (alignments) 3.8 GB
ENCFF875XWY.bigWig bigWig (minus strand signal of all reads) 75.9 MB
ENCFF876TXE.bigWig bigWig (plus strand signal of all reads) 84.0 MB
ENCFF891NNB.bigWig bigWig (minus strand signal of all reads) 73.5 MB
ENCFF893QSX.bigWig bigWig (minus strand signal of all reads) 71.0 MB
ENCFF896RPT.bam bam (alignments) 4.5 GB
ENCFF897YQO.bigWig bigWig (plus strand signal of unique reads) 75.7 MB
ENCFF899YII.fastq fastq (reads) 2.4 GB
ENCFF900UXL.bigWig bigWig (plus strand signal of unique reads) 70.4 MB
ENCFF926SNA.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF935KKV.fastq fastq (reads) 2.2 GB
ENCFF935KYS.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF944DFV.tsv tsv (transcript quantifications) 25.3 MB
ENCFF953CFM.bam bam (transcriptome alignments) 5.7 GB
ENCFF956EPE.bigWig bigWig (minus strand signal of all reads) 82.2 MB
ENCFF957PJE.bigWig bigWig (minus strand signal of all reads) 76.5 MB
ENCFF971PXE.bigWig bigWig (plus strand signal of all reads) 77.6 MB
ENCFF975NAH.bigWig bigWig (plus strand signal of all reads) 84.0 MB
ENCFF990GKD.bigWig bigWig (minus strand signal of all reads) 82.9 MB
ENCFF993QFR.bigWig bigWig (minus strand signal of unique reads) 74.1 MB
ENCSR815CVQ ENCSR · via encode_api

Control shRNA against no target in K562 cells followed by RNA-seq. (NT BGKLV13)

Homo sapiens

84 data files
FileTypeSize
ENCFF018EJB.tsv tsv (gene quantifications) 9.4 MB
ENCFF035LMI.tsv tsv (gene quantifications) 10.4 MB
ENCFF049PQS.tsv tsv (transcript quantifications) 27.3 MB
ENCFF053KBL.bigWig bigWig (plus strand signal of all reads) 86.1 MB
ENCFF053QIJ.bigWig bigWig (minus strand signal of unique reads) 75.0 MB
ENCFF064BPD.bigWig bigWig (plus strand signal of unique reads) 70.3 MB
ENCFF065JUP.bigWig bigWig (minus strand signal of unique reads) 71.6 MB
ENCFF081BHW.bigWig bigWig (plus strand signal of all reads) 75.0 MB
ENCFF082ODD.bigWig bigWig (minus strand signal of unique reads) 65.3 MB
ENCFF098AIT.tsv tsv (gene quantifications) 9.1 MB
ENCFF124WIZ.fastq fastq (reads) 2.1 GB
ENCFF136LVP.bigWig bigWig (plus strand signal of unique reads) 76.9 MB
ENCFF138DJI.bigWig bigWig (plus strand signal of unique reads) 66.9 MB
ENCFF138SHT.tsv tsv (transcript quantifications) 25.3 MB
ENCFF150UQN.bigWig bigWig (minus strand signal of all reads) 71.3 MB
ENCFF161EYD.bam bam (alignments) 4.5 GB
ENCFF169TMA.bam bam (transcriptome alignments) 4.6 GB
ENCFF172HCG.bigWig bigWig (plus strand signal of unique reads) 73.5 MB
ENCFF177CJI.bam bam (transcriptome alignments) 4.5 GB
ENCFF178BZY.bigWig bigWig (minus strand signal of all reads) 76.8 MB
ENCFF200EEM.bigWig bigWig (plus strand signal of unique reads) 72.8 MB
ENCFF201XBV.bigWig bigWig (plus strand signal of all reads) 72.5 MB
ENCFF236YBI.bigWig bigWig (plus strand signal of all reads) 77.7 MB
ENCFF289UDY.bam bam (transcriptome alignments) 5.1 GB
ENCFF292HLM.fastq fastq (reads) 2.2 GB
ENCFF301GSZ.tsv tsv (gene quantifications) 9.4 MB
ENCFF302IOS.bam bam (alignments) 3.6 GB
ENCFF312ANF.fastq fastq (reads) 2.2 GB
ENCFF312FJX.bigWig bigWig (plus strand signal of unique reads) 69.9 MB
ENCFF339MTI.bigWig bigWig (plus strand signal of unique reads) 76.5 MB
ENCFF339UJZ.bam bam (alignments) 3.7 GB
ENCFF339ZUH.fastq fastq (reads) 2.3 GB
ENCFF356UJZ.bam bam (alignments) 4.2 GB
ENCFF370ZEB.tsv tsv (transcript quantifications) 24.9 MB
ENCFF393TSX.bigWig bigWig (plus strand signal of all reads) 76.5 MB
ENCFF395QLT.bigWig bigWig (plus strand signal of all reads) 83.9 MB
ENCFF395YQV.bigWig bigWig (plus strand signal of unique reads) 76.9 MB
ENCFF397FHE.bam bam (alignments) 4.5 GB
ENCFF432AHM.bigWig bigWig (minus strand signal of all reads) 72.4 MB
ENCFF440DVY.bam bam (alignments) 3.5 GB
ENCFF449VZP.bigWig bigWig (minus strand signal of unique reads) 68.9 MB
ENCFF461TSD.bam bam (alignments) 3.4 GB
ENCFF483VBH.bigWig bigWig (minus strand signal of unique reads) 71.2 MB
ENCFF504GSG.tsv tsv (gene quantifications) 9.1 MB
ENCFF516XCB.bigWig bigWig (minus strand signal of unique reads) 66.1 MB
ENCFF530ICR.bigWig bigWig (minus strand signal of unique reads) 75.1 MB
ENCFF532OOC.bigWig bigWig (minus strand signal of all reads) 81.7 MB
ENCFF555FVO.bigWig bigWig (plus strand signal of all reads) 78.4 MB
ENCFF564LNC.bigWig bigWig (minus strand signal of unique reads) 74.7 MB
ENCFF565RVL.bigWig bigWig (minus strand signal of all reads) 77.0 MB
ENCFF569GEE.bigWig bigWig (minus strand signal of unique reads) 68.2 MB
ENCFF576PKZ.bigWig bigWig (plus strand signal of all reads) 73.7 MB
ENCFF588KMQ.bigWig bigWig (plus strand signal of unique reads) 74.9 MB
ENCFF592ASF.tsv tsv (gene quantifications) 10.4 MB
ENCFF607GDH.bigWig bigWig (plus strand signal of all reads) 82.8 MB
ENCFF643MHY.bigWig bigWig (minus strand signal of all reads) 82.8 MB
ENCFF644SIW.bigWig bigWig (plus strand signal of unique reads) 67.9 MB
ENCFF653XRE.bigWig bigWig (minus strand signal of unique reads) 73.1 MB
ENCFF661WAD.bigWig bigWig (minus strand signal of unique reads) 72.4 MB
ENCFF662KLY.bam bam (alignments) 4.0 GB
ENCFF679UOI.bigWig bigWig (plus strand signal of all reads) 83.8 MB
ENCFF704EST.tsv tsv (transcript quantifications) 24.9 MB
ENCFF719KTF.tsv tsv (transcript quantifications) 29.8 MB
ENCFF719NOF.bigWig bigWig (plus strand signal of all reads) 85.4 MB
ENCFF761ZTW.bam bam (alignments) 3.4 GB
ENCFF771HWI.bigWig bigWig (plus strand signal of all reads) 86.1 MB
ENCFF775PQE.bam bam (alignments) 4.1 GB
ENCFF778GFF.bam bam (transcriptome alignments) 4.9 GB
ENCFF779MFF.bigWig bigWig (minus strand signal of all reads) 85.1 MB
ENCFF789XXA.bigWig bigWig (plus strand signal of unique reads) 73.6 MB
ENCFF818YAF.bigWig bigWig (minus strand signal of all reads) 82.8 MB
ENCFF839SZZ.bam bam (alignments) 4.1 GB
ENCFF848ICK.bigWig bigWig (minus strand signal of all reads) 74.1 MB
ENCFF859ZJB.bam bam (transcriptome alignments) 4.9 GB
ENCFF890RPW.bigWig bigWig (minus strand signal of all reads) 85.1 MB
ENCFF903ESB.tsv tsv (transcript quantifications) 29.8 MB
ENCFF911TST.bigWig bigWig (plus strand signal of unique reads) 74.3 MB
ENCFF921SOJ.bigWig bigWig (minus strand signal of all reads) 75.3 MB
ENCFF959DUA.bigWig bigWig (minus strand signal of all reads) 84.3 MB
ENCFF961UXZ.tsv tsv (transcript quantifications) 25.3 MB
ENCFF984FKT.bam bam (transcriptome alignments) 5.5 GB
ENCFF985IXD.bam bam (alignments) 3.6 GB
ENCFF985UWA.tsv tsv (transcript quantifications) 27.3 MB
ENCFF998PAW.bigWig bigWig (minus strand signal of unique reads) 72.0 MB
ENCSR468FSW ENCSR · via encode_api

eCLIP experiment on K562 against SRSF7

Homo sapiens

35 data files
FileTypeSize
ENCFF077YYE.fastq fastq (reads) 130.4 MB
ENCFF081CCQ.bigBed bigBed (peaks) 519.9 KB
ENCFF090BZK.bed bed (peaks) 842.2 KB
ENCFF120PTS.bigWig bigWig (minus strand signal of unique reads) 9.2 MB
ENCFF149XNS.bam bam (alignments) 146.7 MB
ENCFF210RVX.bigBed bigBed (peaks) 2.5 MB
ENCFF249SJD.bigWig bigWig (minus strand signal of unique reads) 12.6 MB
ENCFF302CUU.bam bam (alignments) 213.2 MB
ENCFF435RSV.bed bed (peaks) 217.2 KB
ENCFF435SBL.bigBed bigBed (peaks) 1.5 MB
ENCFF447CPA.fastq fastq (reads) 131.3 MB
ENCFF449ZHX.bed bed (peaks) 11.4 KB
ENCFF461OLQ.bigWig bigWig (plus strand signal of unique reads) 9.9 MB
ENCFF493RTH.bigWig bigWig (plus strand signal of unique reads) 9.6 MB
ENCFF514XIM.bigWig bigWig (plus strand signal of unique reads) 13.3 MB
ENCFF542LDV.bam bam (alignments) 151.5 MB
ENCFF598URC.bed bed (peaks) 593.4 KB
ENCFF662IDU.bigBed bigBed (peaks) 507.0 KB
ENCFF666GUD.bigBed bigBed (peaks) 1.7 MB
ENCFF726GHH.bigBed bigBed (peaks) 1.1 MB
ENCFF728JKU.bed bed (peaks) 836.6 KB
ENCFF732TWX.bigBed bigBed (peaks) 1.5 MB
ENCFF734HPR.bed bed (peaks) 631.9 KB
ENCFF762FNM.bigBed bigBed (peaks) 1.1 MB
ENCFF780OCY.bed bed (peaks) 12.0 KB
ENCFF789FCB.fastq fastq (reads) 272.3 MB
ENCFF822SZT.bed bed (peaks) 211.1 KB
ENCFF856RRP.bigWig bigWig (minus strand signal of unique reads) 9.4 MB
ENCFF882BNF.bigBed bigBed (peaks) 1.7 MB
ENCFF899CLF.bigWig bigWig (minus strand signal of unique reads) 12.8 MB
ENCFF931PJS.fastq fastq (reads) 273.3 MB
ENCFF937IVH.bam bam (alignments) 208.1 MB
ENCFF939AMV.bed bed (peaks) 1020.9 KB
ENCFF974CLY.bigWig bigWig (plus strand signal of unique reads) 13.1 MB
ENCFF986KGV.bed bed (peaks) 1.0 MB
ENCSR887LPK ENCSR · via encode_api

eCLIP experiment on K562 against EWSR1

Homo sapiens

36 data files
FileTypeSize
ENCFF089KGQ.bigBed bigBed (peaks) 1.9 MB
ENCFF130VUZ.bigWig bigWig (plus strand signal of unique reads) 14.5 MB
ENCFF149PCY.bed bed (peaks) 102.2 KB
ENCFF152FIO.bigBed bigBed (peaks) 2.1 MB
ENCFF190DZN.bigBed bigBed (peaks) 1.9 MB
ENCFF286FNZ.bigWig bigWig (plus strand signal of unique reads) 16.9 MB
ENCFF288UBG.bed bed (peaks) 108.2 KB
ENCFF323APL.bed bed (peaks) 314.8 KB
ENCFF347DCZ.bigWig bigWig (plus strand signal of unique reads) 14.8 MB
ENCFF349OGH.bigBed bigBed (peaks) 311.3 KB
ENCFF454UJY.bigBed bigBed (peaks) 1.1 MB
ENCFF455LTY.bam bam (alignments) 311.0 MB
ENCFF472AQE.bigWig bigWig (plus strand signal of unique reads) 17.4 MB
ENCFF479DUE.bed bed (peaks) 330.0 KB
ENCFF503AVX.bigWig bigWig (minus strand signal of unique reads) 13.6 MB
ENCFF514NRD.fastq fastq (reads) 194.9 MB
ENCFF529KND.fastq fastq (reads) 166.6 MB
ENCFF535SBV.bed bed (peaks) 1.1 MB
ENCFF607ZRF.bed bed (peaks) 181.5 KB
ENCFF621ZUN.bed bed (peaks) 1015.3 KB
ENCFF658QZE.bigWig bigWig (minus strand signal of unique reads) 15.9 MB
ENCFF700TZR.bigWig bigWig (minus strand signal of unique reads) 16.2 MB
ENCFF707PCZ.bigBed bigBed (peaks) 798.2 KB
ENCFF717ZFI.bigBed bigBed (peaks) 2.1 MB
ENCFF758RAD.bed bed (peaks) 1006.0 KB
ENCFF777PUE.bigBed bigBed (peaks) 757.6 KB
ENCFF797UGN.fastq fastq (reads) 197.7 MB
ENCFF842YPC.bam bam (alignments) 303.2 MB
ENCFF890NIT.bed bed (peaks) 180.9 KB
ENCFF895XBQ.bigBed bigBed (peaks) 342.8 KB
ENCFF921GQG.fastq fastq (reads) 169.5 MB
ENCFF922VUQ.bam bam (alignments) 268.5 MB
ENCFF951IMO.bigWig bigWig (minus strand signal of unique reads) 13.8 MB
ENCFF975NJX.bam bam (alignments) 260.6 MB
ENCFF994ALN.bigBed bigBed (peaks) 1.2 MB
ENCFF998MNV.bed bed (peaks) 1.1 MB
ENCSR862QCH ENCSR · via encode_api

eCLIP experiment on K562 against U2AF1

Homo sapiens

36 data files
FileTypeSize
ENCFF007KJO.bed bed (peaks) 535.0 KB
ENCFF129MRQ.bigBed bigBed (peaks) 2.0 MB
ENCFF132PVT.bam bam (alignments) 127.7 MB
ENCFF160QIG.bigBed bigBed (peaks) 1.0 MB
ENCFF163SWW.bed bed (peaks) 27.3 KB
ENCFF163SZQ.bigBed bigBed (peaks) 1.5 MB
ENCFF164HBW.bigWig bigWig (plus strand signal of unique reads) 13.2 MB
ENCFF208AKL.fastq fastq (reads) 243.9 MB
ENCFF259XOH.bed bed (peaks) 692.6 KB
ENCFF262KAI.bigWig bigWig (minus strand signal of unique reads) 12.6 MB
ENCFF314SWS.bam bam (alignments) 185.2 MB
ENCFF331EAF.bigBed bigBed (peaks) 1.5 MB
ENCFF346WCF.bigBed bigBed (peaks) 2.7 MB
ENCFF362OME.bigWig bigWig (minus strand signal of unique reads) 7.0 MB
ENCFF362XUO.bed bed (peaks) 1.2 MB
ENCFF364VVL.bigWig bigWig (plus strand signal of unique reads) 9.6 MB
ENCFF367JCV.bam bam (alignments) 129.1 MB
ENCFF420SMK.bigBed bigBed (peaks) 2.1 MB
ENCFF425GCF.bam bam (alignments) 187.1 MB
ENCFF459QRI.bigBed bigBed (peaks) 498.2 KB
ENCFF468LUS.bed bed (peaks) 865.9 KB
ENCFF483ODR.bed bed (peaks) 867.1 KB
ENCFF555DWV.bed bed (peaks) 1.2 MB
ENCFF584WFG.bed bed (peaks) 263.3 KB
ENCFF607AXF.bigWig bigWig (plus strand signal of unique reads) 13.1 MB
ENCFF612ERE.bigBed bigBed (peaks) 1.3 MB
ENCFF640IHY.bed bed (peaks) 27.3 KB
ENCFF663SQD.fastq fastq (reads) 298.5 MB
ENCFF672OHA.bigWig bigWig (minus strand signal of unique reads) 12.7 MB
ENCFF818OSI.fastq fastq (reads) 233.0 MB
ENCFF822MGE.bigWig bigWig (minus strand signal of unique reads) 7.0 MB
ENCFF840LLJ.bed bed (peaks) 203.5 KB
ENCFF856BKY.bigBed bigBed (peaks) 2.0 MB
ENCFF857TTP.bigBed bigBed (peaks) 615.2 KB
ENCFF936MBM.fastq fastq (reads) 288.1 MB
ENCFF939EXV.bigWig bigWig (plus strand signal of unique reads) 9.5 MB
ENCSR224QWC ENCSR · via encode_api

eCLIP experiment on K562 against FXR2

Homo sapiens

36 data files
FileTypeSize
ENCFF004XSV.bed bed (peaks) 279.6 KB
ENCFF016LWQ.bigWig bigWig (minus strand signal of unique reads) 9.3 MB
ENCFF027VSR.bigBed bigBed (peaks) 2.2 MB
ENCFF039HYM.bam bam (alignments) 144.4 MB
ENCFF081NPT.bigWig bigWig (plus strand signal of unique reads) 10.3 MB
ENCFF164SVS.bigBed bigBed (peaks) 2.8 MB
ENCFF167CYW.bigBed bigBed (peaks) 2.1 MB
ENCFF179VQL.fastq fastq (reads) 217.8 MB
ENCFF237PCI.bed bed (peaks) 998.3 KB
ENCFF257DYY.bigWig bigWig (minus strand signal of unique reads) 9.3 MB
ENCFF315HYU.bed bed (peaks) 93.7 KB
ENCFF323QTM.bigBed bigBed (peaks) 2.0 MB
ENCFF356YQZ.bigBed bigBed (peaks) 1.7 MB
ENCFF363IJZ.bed bed (peaks) 90.8 KB
ENCFF390XNM.fastq fastq (reads) 199.5 MB
ENCFF394EQW.bed bed (peaks) 1.1 MB
ENCFF459RQT.bam bam (alignments) 146.8 MB
ENCFF478FFU.bigWig bigWig (plus strand signal of unique reads) 10.2 MB
ENCFF486BGJ.bigWig bigWig (minus strand signal of unique reads) 10.0 MB
ENCFF486RBU.bigWig bigWig (minus strand signal of unique reads) 10.1 MB
ENCFF487CVX.fastq fastq (reads) 213.7 MB
ENCFF533NOT.bed bed (peaks) 1.0 MB
ENCFF616XVI.fastq fastq (reads) 237.2 MB
ENCFF638BKP.bigWig bigWig (plus strand signal of unique reads) 9.5 MB
ENCFF639OOE.bed bed (peaks) 976.5 KB
ENCFF649JBB.bigBed bigBed (peaks) 2.0 MB
ENCFF679UMY.bed bed (peaks) 811.3 KB
ENCFF713BGN.bigWig bigWig (plus strand signal of unique reads) 9.5 MB
ENCFF847YIY.bigBed bigBed (peaks) 3.8 MB
ENCFF853ORC.bigBed bigBed (peaks) 910.0 KB
ENCFF871ZJM.bed bed (peaks) 1.1 MB
ENCFF880NPI.bam bam (alignments) 143.6 MB
ENCFF905TKG.bigBed bigBed (peaks) 2.0 MB
ENCFF950NHZ.bam bam (alignments) 145.8 MB
ENCFF980OWT.bigBed bigBed (peaks) 597.0 KB
ENCFF981JDY.bed bed (peaks) 382.3 KB
ENCSR384MWO ENCSR · via encode_api

eCLIP experiment on HepG2 against CSTF2

Homo sapiens

34 data files
FileTypeSize
ENCFF070WAE.bigBed bigBed (peaks) 6.7 MB
ENCFF103BFG.bam bam (alignments) 1.0 GB
ENCFF175HHG.bam bam (alignments) 654.5 MB
ENCFF180MDZ.fastq fastq (reads) 468.8 MB
ENCFF191KGC.bigWig bigWig (minus strand signal of unique reads) 33.7 MB
ENCFF222ULF.bed bed (peaks) 67.9 KB
ENCFF349SVY.bed bed (peaks) 71.2 KB
ENCFF366XCA.fastq fastq (reads) 508.1 MB
ENCFF370ZBJ.bed bed (peaks) 3.7 MB
ENCFF376BHV.bigBed bigBed (peaks) 625.7 KB
ENCFF399CRA.bam bam (alignments) 1.0 GB
ENCFF408GJH.fastq fastq (reads) 653.5 MB
ENCFF417RIT.bed bed (peaks) 706.5 KB
ENCFF463YTG.bigBed bigBed (peaks) 516.4 KB
ENCFF470CWS.bigWig bigWig (minus strand signal of unique reads) 34.0 MB
ENCFF532CDP.bigBed bigBed (peaks) 5.3 MB
ENCFF548SIH.bed bed (peaks) 2.9 MB
ENCFF580TXC.bigBed bigBed (peaks) 1.1 MB
ENCFF583SUZ.bigWig bigWig (plus strand signal of unique reads) 49.8 MB
ENCFF597QAD.fastq fastq (reads) 699.6 MB
ENCFF616EZQ.bam bam (alignments) 646.5 MB
ENCFF631HDH.bed bed (peaks) 279.3 KB
ENCFF645IXY.bed bed (peaks) 3.7 MB
ENCFF731EAQ.bed bed (peaks) 210.3 KB
ENCFF754CEO.bigBed bigBed (peaks) 5.4 MB
ENCFF809MHM.bed bed (peaks) 556.7 KB
ENCFF832WSM.bigBed bigBed (peaks) 1.5 MB
ENCFF854WKT.bigWig bigWig (minus strand signal of unique reads) 48.9 MB
ENCFF873ZCC.bigWig bigWig (minus strand signal of unique reads) 49.4 MB
ENCFF892JUQ.bed bed (peaks) 2.9 MB
ENCFF895BUH.bigWig bigWig (plus strand signal of unique reads) 34.8 MB
ENCFF930JBO.bigBed bigBed (peaks) 6.6 MB
ENCFF932RHC.bigWig bigWig (plus strand signal of unique reads) 35.1 MB
ENCFF982KSU.bigWig bigWig (plus strand signal of unique reads) 50.2 MB
ENCSR961OKA ENCSR · via encode_api

eCLIP experiment on HepG2 against LARP7

Homo sapiens

36 data files
FileTypeSize
ENCFF021RGI.bigWig bigWig (plus strand signal of unique reads) 985.7 KB
ENCFF086NCN.bam bam (alignments) 17.5 MB
ENCFF094NLZ.bigWig bigWig (minus strand signal of unique reads) 957.3 KB
ENCFF111FGV.bigBed bigBed (peaks) 871.3 KB
ENCFF237QRX.fastq fastq (reads) 248.7 MB
ENCFF288CUS.bigWig bigWig (minus strand signal of unique reads) 2.9 MB
ENCFF302FFF.bed bed (peaks) 6.3 KB
ENCFF307MDW.bed bed (peaks) 6.7 KB
ENCFF345DPL.bam bam (alignments) 54.5 MB
ENCFF349EFG.bigBed bigBed (peaks) 350.6 KB
ENCFF359PQT.bigBed bigBed (peaks) 348.4 KB
ENCFF406RMO.bam bam (alignments) 17.7 MB
ENCFF419HTA.fastq fastq (reads) 279.1 MB
ENCFF440FLF.bed bed (peaks) 241.6 KB
ENCFF444BRP.bigWig bigWig (minus strand signal of unique reads) 950.1 KB
ENCFF456IDX.bigBed bigBed (peaks) 212.8 KB
ENCFF475MDR.bigWig bigWig (plus strand signal of unique reads) 983.4 KB
ENCFF511UJI.bigBed bigBed (peaks) 779.1 KB
ENCFF554DOS.bed bed (peaks) 190.6 KB
ENCFF580VMP.bigBed bigBed (peaks) 396.4 KB
ENCFF581UPI.bigBed bigBed (peaks) 240.7 KB
ENCFF602EAQ.bigWig bigWig (plus strand signal of unique reads) 3.0 MB
ENCFF647TKI.bed bed (peaks) 153.0 KB
ENCFF648IVU.bed bed (peaks) 147.1 KB
ENCFF699ZLU.bed bed (peaks) 155.0 KB
ENCFF715ENY.bigWig bigWig (plus strand signal of unique reads) 3.0 MB
ENCFF726UBI.bigBed bigBed (peaks) 460.0 KB
ENCFF774NGW.bed bed (peaks) 239.7 KB
ENCFF805KJP.bam bam (alignments) 55.0 MB
ENCFF805TLC.bigBed bigBed (peaks) 553.3 KB
ENCFF818ZDH.bed bed (peaks) 91.6 KB
ENCFF834FSL.fastq fastq (reads) 220.4 MB
ENCFF932HYJ.fastq fastq (reads) 246.6 MB
ENCFF943MCG.bed bed (peaks) 86.2 KB
ENCFF956QRJ.bigWig bigWig (minus strand signal of unique reads) 2.9 MB
ENCFF970YGH.bigBed bigBed (peaks) 280.9 KB
ENCSR795CAI ENCSR · via encode_api

eCLIP experiment on K562 against HNRNPL

Homo sapiens

26 data files
FileTypeSize
ENCFF011UYB.bigBed bigBed (peaks) 5.9 MB
ENCFF047HJB.bigBed bigBed (peaks) 1.5 MB
ENCFF077OSY.bed bed (peaks) 3.7 MB
ENCFF142CTH.bigWig bigWig (minus strand signal of unique reads) 35.8 MB
ENCFF265DCY.bigWig bigWig (minus strand signal of unique reads) 38.4 MB
ENCFF296JHG.bed bed (peaks) 133.4 KB
ENCFF305DWD.bigWig bigWig (plus strand signal of unique reads) 32.3 MB
ENCFF317GJD.bigWig bigWig (minus strand signal of unique reads) 31.5 MB
ENCFF330GSE.bam bam (alignments) 691.3 MB
ENCFF376FVR.bigWig bigWig (plus strand signal of unique reads) 36.8 MB
ENCFF401YRZ.bed bed (peaks) 3.3 MB
ENCFF431VLG.bam bam (alignments) 835.1 MB
ENCFF490VFL.fastq fastq (reads) 633.4 MB
ENCFF549QWD.fastq fastq (reads) 647.2 MB
ENCFF669YDE.fastq fastq (reads) 677.8 MB
ENCFF732DVC.bigBed bigBed (peaks) 6.6 MB
ENCFF775AIE.bam bam (alignments) 659.4 MB
ENCFF782DAY.bed bed (peaks) 3.9 MB
ENCFF784INC.bigWig bigWig (minus strand signal of unique reads) 33.0 MB
ENCFF796KSB.bed bed (peaks) 3.4 MB
ENCFF868IOA.fastq fastq (reads) 605.4 MB
ENCFF917CBK.bed bed (peaks) 136.7 KB
ENCFF936QWH.bigWig bigWig (plus strand signal of unique reads) 33.4 MB
ENCFF947TVI.bigWig bigWig (plus strand signal of unique reads) 39.6 MB
ENCFF972QCF.bigBed bigBed (peaks) 1.3 MB
ENCFF993XXG.bam bam (alignments) 774.5 MB
ENCSR608IAI ENCSR · via encode_api

shRNA knockdown against FASTKD2 in K562 cells followed by RNA-seq. (FASTKD2 BGKLV13)

Homo sapiens

92 data files
FileTypeSize
ENCFF003DZU.bigWig bigWig (minus strand signal of all reads) 96.6 MB
ENCFF031WIO.bam bam (transcriptome alignments) 4.5 GB
ENCFF032JCC.tsv tsv (transcript quantifications) 29.8 MB
ENCFF057BFO.bigWig bigWig (minus strand signal of unique reads) 76.7 MB
ENCFF069QFP.bigWig bigWig (minus strand signal of all reads) 106.8 MB
ENCFF072TOC.bam bam (alignments) 4.0 GB
ENCFF073KMF.bigWig bigWig (plus strand signal of unique reads) 74.9 MB
ENCFF082CRA.tsv tsv (gene quantifications) 9.1 MB
ENCFF085OOT.fastq fastq (reads) 2.8 GB
ENCFF115JEM.tsv tsv (gene quantifications) 9.4 MB
ENCFF127GGW.bigWig bigWig (plus strand signal of all reads) 108.1 MB
ENCFF132KGL.bigWig bigWig (plus strand signal of all reads) 75.7 MB
ENCFF147HVU.bigWig bigWig (plus strand signal of unique reads) 96.8 MB
ENCFF148SRU.bigWig bigWig (plus strand signal of all reads) 106.6 MB
ENCFF151JTA.bigWig bigWig (minus strand signal of all reads) 89.8 MB
ENCFF167LPD.bigWig bigWig (plus strand signal of all reads) 81.7 MB
ENCFF168DBI.tsv tsv (differential expression quantifications) 1.8 MB
ENCFF185RYO.bigWig bigWig (minus strand signal of unique reads) 88.5 MB
ENCFF193YRG.bigWig bigWig (plus strand signal of unique reads) 79.2 MB
ENCFF194MEF.bam bam (transcriptome alignments) 5.0 GB
ENCFF196FMT.tsv tsv (transcript quantifications) 25.3 MB
ENCFF217OOE.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF217PIT.tsv tsv (transcript quantifications) 24.9 MB
ENCFF218FTU.fastq fastq (reads) 2.8 GB
ENCFF224KON.tsv tsv (transcript quantifications) 27.4 MB
ENCFF224RNG.bigWig bigWig (minus strand signal of unique reads) 73.0 MB
ENCFF252PEB.bigWig bigWig (plus strand signal of unique reads) 95.7 MB
ENCFF263QWH.bam bam (transcriptome alignments) 4.5 GB
ENCFF281APN.bigWig bigWig (minus strand signal of all reads) 105.3 MB
ENCFF284XOI.bigWig bigWig (minus strand signal of all reads) 85.1 MB
ENCFF292WHU.tsv tsv (transcript quantifications) 27.3 MB
ENCFF296VEC.bigWig bigWig (plus strand signal of unique reads) 90.3 MB
ENCFF299LYR.tsv tsv (differential expression quantifications) 4.2 MB
ENCFF303YSW.bigWig bigWig (plus strand signal of unique reads) 78.8 MB
ENCFF306ISD.bigWig bigWig (plus strand signal of all reads) 97.0 MB
ENCFF306IXV.bigWig bigWig (minus strand signal of all reads) 106.8 MB
ENCFF312ZOZ.bam bam (alignments) 4.4 GB
ENCFF324LBN.bigWig bigWig (plus strand signal of unique reads) 75.0 MB
ENCFF327WFT.bigWig bigWig (minus strand signal of unique reads) 94.7 MB
ENCFF336FWA.bigWig bigWig (minus strand signal of unique reads) 81.8 MB
ENCFF372EFP.bigWig bigWig (plus strand signal of all reads) 86.1 MB
ENCFF374AHM.bigWig bigWig (minus strand signal of unique reads) 94.6 MB
ENCFF389LXX.tsv tsv (gene quantifications) 10.4 MB
ENCFF415IGR.fastq fastq (reads) 2.1 GB
ENCFF448ZGM.bigWig bigWig (minus strand signal of all reads) 95.8 MB
ENCFF470ZON.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF475ODF.bigWig bigWig (minus strand signal of unique reads) 77.5 MB
ENCFF493PVU.tsv tsv (transcript quantifications) 25.3 MB
ENCFF504MLE.bam bam (transcriptome alignments) 6.4 GB
ENCFF538XBU.bigWig bigWig (minus strand signal of unique reads) 68.0 MB
ENCFF540CKV.bigWig bigWig (minus strand signal of all reads) 74.5 MB
ENCFF552DJK.bigWig bigWig (minus strand signal of unique reads) 93.4 MB
ENCFF572UOS.tsv tsv (differential expression quantifications) 2.8 MB
ENCFF575FWC.bam bam (alignments) 4.2 GB
ENCFF594CZL.bigWig bigWig (plus strand signal of all reads) 91.4 MB
ENCFF602LJG.fastq fastq (reads) 2.2 GB
ENCFF616DAL.bigWig bigWig (minus strand signal of all reads) 80.3 MB
ENCFF635XVZ.bam bam (alignments) 3.4 GB
ENCFF638DXJ.bam bam (alignments) 4.5 GB
ENCFF639EMO.bam bam (alignments) 5.4 GB
ENCFF655HYO.tar tar (differential splicing quantifications) 3.2 MB
ENCFF666PPJ.tar tar (differential splicing quantifications) 13.7 MB
ENCFF694OMX.tsv tsv (gene quantifications) 9.1 MB
ENCFF712XAQ.tsv tsv (transcript quantifications) 24.9 MB
ENCFF735UVG.bigWig bigWig (plus strand signal of all reads) 89.4 MB
ENCFF757JTC.bigWig bigWig (minus strand signal of all reads) 88.4 MB
ENCFF758EZW.bam bam (alignments) 4.2 GB
ENCFF769WTL.bigWig bigWig (plus strand signal of unique reads) 78.6 MB
ENCFF781YOL.bam bam (alignments) 5.2 GB
ENCFF789TWO.bigWig bigWig (plus strand signal of all reads) 89.5 MB
ENCFF795OUE.bigWig bigWig (plus strand signal of unique reads) 96.8 MB
ENCFF799DBX.bigWig bigWig (plus strand signal of unique reads) 84.0 MB
ENCFF806PWN.tsv tsv (transcript quantifications) 29.8 MB
ENCFF828NSO.bigWig bigWig (plus strand signal of all reads) 108.1 MB
ENCFF830RHX.tsv tsv (gene quantifications) 10.4 MB
ENCFF833EEH.bigWig bigWig (minus strand signal of all reads) 88.4 MB
ENCFF840SGC.tar tar (differential splicing quantifications) 3.5 MB
ENCFF854MEG.bigWig bigWig (minus strand signal of unique reads) 73.5 MB
ENCFF860GTB.bigWig bigWig (minus strand signal of all reads) 79.1 MB
ENCFF864XZO.bigWig bigWig (plus strand signal of unique reads) 91.2 MB
ENCFF867RSA.bam bam (transcriptome alignments) 5.7 GB
ENCFF873CFS.bam bam (transcriptome alignments) 5.6 GB
ENCFF874CWN.bigWig bigWig (minus strand signal of unique reads) 89.0 MB
ENCFF891BUX.bigWig bigWig (plus strand signal of all reads) 80.0 MB
ENCFF914TFA.bigWig bigWig (plus strand signal of all reads) 98.3 MB
ENCFF919WTJ.bam bam (alignments) 3.4 GB
ENCFF938FYX.bam bam (alignments) 3.5 GB
ENCFF946CDR.bam bam (alignments) 5.4 GB
ENCFF961OZZ.tsv tsv (gene quantifications) 9.4 MB
ENCFF961PAJ.bigWig bigWig (minus strand signal of unique reads) 77.1 MB
ENCFF967GTQ.bam bam (alignments) 4.4 GB
ENCFF989JMZ.bigWig bigWig (plus strand signal of unique reads) 69.7 MB
ENCSR648LAH ENCSR · via encode_api

eCLIP experiment on HepG2 against DDX3X

Homo sapiens

36 data files
FileTypeSize
ENCFF002LWJ.bigWig bigWig (minus strand signal of unique reads) 14.4 MB
ENCFF015JWG.bigBed bigBed (peaks) 703.3 KB
ENCFF033UUP.bigWig bigWig (plus strand signal of unique reads) 6.9 MB
ENCFF034VAT.bigBed bigBed (peaks) 2.9 MB
ENCFF055DVS.bigBed bigBed (peaks) 1.3 MB
ENCFF059FHR.fastq fastq (reads) 673.2 MB
ENCFF110YPM.bigWig bigWig (plus strand signal of unique reads) 6.7 MB
ENCFF244ADV.fastq fastq (reads) 712.3 MB
ENCFF312SMY.bed bed (peaks) 581.4 KB
ENCFF336PLF.bigBed bigBed (peaks) 1.6 MB
ENCFF371HBY.bigWig bigWig (minus strand signal of unique reads) 6.6 MB
ENCFF392EOJ.bigWig bigWig (minus strand signal of unique reads) 6.4 MB
ENCFF397MAX.bed bed (peaks) 274.9 KB
ENCFF402KOO.bam bam (alignments) 258.1 MB
ENCFF484KWX.fastq fastq (reads) 680.5 MB
ENCFF500QBI.bigBed bigBed (peaks) 1.7 MB
ENCFF524KUN.fastq fastq (reads) 652.3 MB
ENCFF541RQV.bigBed bigBed (peaks) 1.0 MB
ENCFF562CTF.bigBed bigBed (peaks) 2.6 MB
ENCFF624DZN.bigBed bigBed (peaks) 2.6 MB
ENCFF635SWD.bed bed (peaks) 1.3 MB
ENCFF637BHY.bed bed (peaks) 399.0 KB
ENCFF766CEZ.bed bed (peaks) 856.3 KB
ENCFF777NMK.bed bed (peaks) 199.3 KB
ENCFF798XQM.bed bed (peaks) 1.3 MB
ENCFF799ICU.bed bed (peaks) 790.4 KB
ENCFF852SBL.bigBed bigBed (peaks) 2.2 MB
ENCFF856BBW.bigWig bigWig (plus strand signal of unique reads) 15.1 MB
ENCFF871UZO.bed bed (peaks) 764.9 KB
ENCFF878MOI.bigWig bigWig (plus strand signal of unique reads) 14.8 MB
ENCFF885OWJ.bed bed (peaks) 208.7 KB
ENCFF889OOU.bam bam (alignments) 136.1 MB
ENCFF897PUV.bigBed bigBed (peaks) 2.0 MB
ENCFF951KHO.bigWig bigWig (minus strand signal of unique reads) 14.7 MB
ENCFF957SIF.bam bam (alignments) 128.5 MB
ENCFF984UNN.bam bam (alignments) 266.5 MB
ENCSR936LOF ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) pulldown experiment against FUS

13 data files
FileTypeSize
ENCFF031YEF.bed bed (peaks) 57.7 KB
ENCFF293XMV.tsv tsv (enrichment) 14.8 KB
ENCFF375AIG.fastq fastq (reads) 338.6 MB
ENCFF409RJT.tsv tsv (enrichment) 244.0 KB
ENCFF448YEM.fastq fastq (reads) 382.5 MB
ENCFF456TPW.tsv tsv (library fraction) 17.8 KB
ENCFF471JZK.tsv tsv (library fraction) 75.0 KB
ENCFF680AGJ.fastq fastq (reads) 394.7 MB
ENCFF692LOC.fastq fastq (reads) 443.2 MB
ENCFF739HXK.fastq fastq (reads) 358.8 MB
ENCFF745URC.tsv tsv (library fraction) 313.2 KB
ENCFF835DNX.tsv tsv (enrichment) 60.0 KB
ENCFF907TLO.bed bed (peaks) 345.9 KB
ENCSR506UPY ENCSR · via encode_api

eCLIP experiment on HepG2 against SUGP2

Homo sapiens

34 data files
FileTypeSize
ENCFF013JLF.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 46.6 MB
ENCFF021YLI.bed bed (peaks); assembly: hg19 648.5 KB
ENCFF094XXN.bed bed (peaks); assembly: GRCh38 189.2 KB
ENCFF104AQW.bed bed (peaks); assembly: GRCh38 214.9 KB
ENCFF126YYJ.bigBed bigBed (peaks); assembly: GRCh38 511.8 KB
ENCFF153AHV.bigBed bigBed (peaks); assembly: hg19 1.2 MB
ENCFF179OBF.fastq fastq (reads) 711.4 MB
ENCFF187DUQ.bed bed (peaks); assembly: hg19 4.0 MB
ENCFF191XRG.bed bed (peaks); assembly: GRCh38 305.1 KB
ENCFF227NBE.bigBed bigBed (peaks); assembly: hg19 1.3 MB
ENCFF265BFS.bam bam (alignments); assembly: hg19 995.5 MB
ENCFF277PGA.bigBed bigBed (peaks); assembly: hg19 7.8 MB
ENCFF319BFO.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 42.7 MB
ENCFF358YCG.fastq fastq (reads) 717.1 MB
ENCFF451TDR.fastq fastq (reads) 761.4 MB
ENCFF471YGE.bigBed bigBed (peaks); assembly: GRCh38 7.1 MB
ENCFF475UFB.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 45.5 MB
ENCFF479OSQ.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 41.7 MB
ENCFF523CEP.bed bed (peaks); assembly: hg19 581.0 KB
ENCFF556QBW.bam bam (alignments); assembly: hg19 895.9 MB
ENCFF557XZB.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 44.3 MB
ENCFF572VUS.bed bed (peaks); assembly: GRCh38 4.0 MB
ENCFF600AXE.bam bam (alignments); assembly: GRCh38 961.7 MB
ENCFF637DYJ.bigBed bigBed (peaks); assembly: GRCh38 7.8 MB
ENCFF699DTX.bed bed (peaks); assembly: hg19 4.4 MB
ENCFF699QMT.bam bam (alignments); assembly: GRCh38 854.4 MB
ENCFF720UIL.bigBed bigBed (peaks); assembly: GRCh38 553.2 KB
ENCFF764MPF.bed bed (peaks); assembly: hg19 308.5 KB
ENCFF781IEY.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 46.6 MB
ENCFF848JIF.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 43.1 MB
ENCFF873UBU.fastq fastq (reads) 771.3 MB
ENCFF935UME.bed bed (peaks); assembly: GRCh38 4.4 MB
ENCFF956IWG.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 47.9 MB
ENCFF990PJC.bigBed bigBed (peaks); assembly: hg19 7.2 MB
ENCSR295OKT ENCSR · via encode_api

eCLIP experiment on K562 against RBM22

Homo sapiens

36 data files
FileTypeSize
ENCFF013KNT.bigWig bigWig (plus strand signal of unique reads) 5.3 MB
ENCFF016HLD.bigWig bigWig (plus strand signal of unique reads) 5.3 MB
ENCFF020UVE.bed bed (peaks) 495.9 KB
ENCFF023UKH.bigBed bigBed (peaks) 997.2 KB
ENCFF039FGP.bed bed (peaks) 20.7 KB
ENCFF045LAO.bam bam (alignments) 116.5 MB
ENCFF074GNZ.bed bed (peaks) 427.2 KB
ENCFF080OLT.fastq fastq (reads) 214.2 MB
ENCFF089HCN.bigBed bigBed (peaks) 306.3 KB
ENCFF150ZOO.bed bed (peaks) 424.9 KB
ENCFF163RYF.fastq fastq (reads) 192.3 MB
ENCFF175VFW.bigWig bigWig (plus strand signal of unique reads) 5.6 MB
ENCFF184OKI.bigBed bigBed (peaks) 877.6 KB
ENCFF202OGT.bigBed bigBed (peaks) 340.2 KB
ENCFF203DIN.bigBed bigBed (peaks) 623.9 KB
ENCFF211NZH.bigWig bigWig (minus strand signal of unique reads) 5.1 MB
ENCFF262TLW.bigBed bigBed (peaks) 560.6 KB
ENCFF280TBX.bigWig bigWig (minus strand signal of unique reads) 5.1 MB
ENCFF326QNK.bed bed (peaks) 143.7 KB
ENCFF345FJL.bed bed (peaks) 122.3 KB
ENCFF367YKB.bam bam (alignments) 122.2 MB
ENCFF374JUK.bed bed (peaks) 298.5 KB
ENCFF391IBH.bam bam (alignments) 120.9 MB
ENCFF396ABE.bigBed bigBed (peaks) 1.4 MB
ENCFF462WNO.bigWig bigWig (minus strand signal of unique reads) 5.4 MB
ENCFF485OHB.bigBed bigBed (peaks) 1.3 MB
ENCFF539JEK.bigWig bigWig (minus strand signal of unique reads) 5.5 MB
ENCFF543MGV.bigBed bigBed (peaks) 880.0 KB
ENCFF634FPH.bigWig bigWig (plus strand signal of unique reads) 5.6 MB
ENCFF828HVQ.bam bam (alignments) 117.8 MB
ENCFF849YEW.bed bed (peaks) 346.5 KB
ENCFF899HGF.bed bed (peaks) 494.2 KB
ENCFF972ZMJ.bed bed (peaks) 19.9 KB
ENCFF980VDY.bigBed bigBed (peaks) 994.3 KB
ENCFF981SGX.fastq fastq (reads) 208.4 MB
ENCFF999SQE.fastq fastq (reads) 232.7 MB
ENCSR202BFN ENCSR · via encode_api

eCLIP experiment on HepG2 against U2AF2

Homo sapiens

36 data files
FileTypeSize
ENCFF006ZCJ.bigBed bigBed (peaks) 5.6 MB
ENCFF016VPA.bigBed bigBed (peaks) 5.6 MB
ENCFF033XVX.bam bam (alignments) 344.8 MB
ENCFF049YYD.bigBed bigBed (peaks) 3.3 MB
ENCFF067JAD.bed bed (peaks) 2.9 MB
ENCFF087ANO.bigWig bigWig (plus strand signal of unique reads) 20.9 MB
ENCFF138BSL.bigBed bigBed (peaks) 761.6 KB
ENCFF152AGZ.bigBed bigBed (peaks) 1.6 MB
ENCFF159SPZ.bigWig bigWig (minus strand signal of unique reads) 20.5 MB
ENCFF159VOF.bed bed (peaks) 222.3 KB
ENCFF202TGG.bed bed (peaks) 339.2 KB
ENCFF224DDZ.bigWig bigWig (minus strand signal of unique reads) 20.4 MB
ENCFF225OKE.bigBed bigBed (peaks) 4.4 MB
ENCFF243RQR.bed bed (peaks) 2.1 MB
ENCFF296DKM.bigBed bigBed (peaks) 733.1 KB
ENCFF309GTH.bigBed bigBed (peaks) 2.1 MB
ENCFF358STL.bam bam (alignments) 507.3 MB
ENCFF368XEI.bigWig bigWig (minus strand signal of unique reads) 27.3 MB
ENCFF423WYC.bigWig bigWig (minus strand signal of unique reads) 27.4 MB
ENCFF440IJI.fastq fastq (reads) 251.7 MB
ENCFF444TCK.bed bed (peaks) 2.9 MB
ENCFF523JWI.bed bed (peaks) 2.1 MB
ENCFF536AFD.bigWig bigWig (plus strand signal of unique reads) 21.0 MB
ENCFF549FYY.bigBed bigBed (peaks) 4.3 MB
ENCFF555WXD.bam bam (alignments) 511.4 MB
ENCFF559BLA.fastq fastq (reads) 302.4 MB
ENCFF565HKG.fastq fastq (reads) 294.2 MB
ENCFF653IKI.bigWig bigWig (plus strand signal of unique reads) 27.6 MB
ENCFF655HHB.bed bed (peaks) 964.3 KB
ENCFF683PRA.bed bed (peaks) 361.7 KB
ENCFF706QJH.bam bam (alignments) 342.5 MB
ENCFF721PWF.bed bed (peaks) 224.6 KB
ENCFF844XTT.bigBed bigBed (peaks) 3.1 MB
ENCFF912MAK.fastq fastq (reads) 230.4 MB
ENCFF913WRH.bigWig bigWig (plus strand signal of unique reads) 27.5 MB
ENCFF917CEZ.bed bed (peaks) 885.8 KB
ENCSR954TYO ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) pulldown experiment against HNRNPL

15 data files
FileTypeSize
ENCFF004ECZ.fastq fastq (reads) 537.9 MB
ENCFF029EII.tsv tsv (enrichment) 168.0 KB
ENCFF035BST.tsv tsv (library fraction) 265.1 KB
ENCFF044BEP.tsv tsv (library fraction) 64.1 KB
ENCFF066AFW.fastq fastq (reads) 720.2 MB
ENCFF086FCD.fastq fastq (reads) 439.2 MB
ENCFF117QKP.bed bed (peaks); assembly: hg19 725.4 KB
ENCFF134FRX.bed bed (peaks); assembly: hg19 465.1 KB
ENCFF262PXW.tsv tsv (enrichment) 10.0 KB
ENCFF407TKA.fastq fastq (reads) 457.1 MB
ENCFF410KFS.tsv tsv (library fraction) 1.1 MB
ENCFF422OAC.tsv tsv (enrichment) 41.0 KB
ENCFF640IUJ.tsv tsv (library fraction) 15.4 KB
ENCFF929YDP.fastq fastq (reads) 570.5 MB
ENCFF941VVI.tsv tsv (enrichment) 688.0 KB
ENCSR958NDU ENCSR · via encode_api

shRNA knockdown against HLTF in K562 cells followed by RNA-seq. (HLTF BGKLV13)

Homo sapiens

92 data files
FileTypeSize
ENCFF008HTA.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 71.6 MB
ENCFF011BAG.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 79.4 MB
ENCFF023HNU.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 3.3 MB
ENCFF026FZL.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 80.4 MB
ENCFF038LSS.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 88.7 MB
ENCFF054EQY.fastq fastq (reads) 2.1 GB
ENCFF057VKF.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 80.5 MB
ENCFF062BJD.bam bam (alignments); assembly: hg19; genome annotation: V19 3.3 GB
ENCFF069FCM.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 80.4 MB
ENCFF098ASV.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 73.0 MB
ENCFF103HTA.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 90.0 MB
ENCFF141RUM.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 88.6 MB
ENCFF145TUQ.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 80.5 MB
ENCFF154GIC.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 67.0 MB
ENCFF166PRS.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 68.4 MB
ENCFF173AAD.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 77.4 MB
ENCFF183BFH.fastq fastq (reads) 2.1 GB
ENCFF194TVA.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.3 MB
ENCFF202UGO.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF233HLZ.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 4.9 GB
ENCFF236XOO.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 73.7 MB
ENCFF238ZYT.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 70.3 MB
ENCFF241WZC.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 70.3 MB
ENCFF246OZA.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 81.8 MB
ENCFF248AFY.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 68.6 MB
ENCFF249RYX.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 83.2 MB
ENCFF252WPO.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF261NES.fastq fastq (reads) 2.0 GB
ENCFF264PKQ.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.1 GB
ENCFF267RNA.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF274TLR.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.9 MB
ENCFF297FRG.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.0 GB
ENCFF311OUF.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 64.9 MB
ENCFF312TRD.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF313QQM.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 68.9 MB
ENCFF332UUV.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF335SMR.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF337KNM.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 78.2 MB
ENCFF358IVQ.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 81.7 MB
ENCFF370ART.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 73.0 MB
ENCFF376SUT.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 90.0 MB
ENCFF377RNQ.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 72.6 MB
ENCFF380EUQ.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 5.5 MB
ENCFF384IDA.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.9 MB
ENCFF387NPL.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 77.1 MB
ENCFF388TMD.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.5 GB
ENCFF391WFP.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF393HIT.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.7 MB
ENCFF444CBA.fastq fastq (reads) 2.1 GB
ENCFF462KYW.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 77.9 MB
ENCFF467YUO.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 71.0 MB
ENCFF477CJS.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 80.6 MB
ENCFF478PQR.bam bam (alignments); assembly: hg19; genome annotation: V19 3.3 GB
ENCFF488HTU.bam bam (alignments); assembly: hg19; genome annotation: V19 3.8 GB
ENCFF494ABF.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 71.0 MB
ENCFF515JUX.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 66.5 MB
ENCFF526DFZ.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 68.8 MB
ENCFF540LRY.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 4.5 GB
ENCFF549COW.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 81.7 MB
ENCFF560BHK.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF562DPZ.bam bam (alignments); assembly: GRCh38; genome annotation: V29 4.0 GB
ENCFF594VBS.bam bam (alignments); assembly: hg19; genome annotation: V19 4.0 GB
ENCFF621WZQ.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 79.5 MB
ENCFF645CHH.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 4.5 GB
ENCFF697AUE.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 3.9 MB
ENCFF701KBY.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 4.1 MB
ENCFF702PXQ.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 4.4 GB
ENCFF710TIR.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 76.6 MB
ENCFF714LFR.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 74.5 MB
ENCFF717VGV.bam bam (alignments); assembly: hg19; genome annotation: V19 3.4 GB
ENCFF726MFX.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF737MXQ.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 88.7 MB
ENCFF748GGL.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.3 GB
ENCFF749CJT.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 63.0 MB
ENCFF756NNL.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 74.9 MB
ENCFF761IKC.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF763PER.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 5.0 GB
ENCFF791JJA.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.8 MB
ENCFF797UHK.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 72.1 MB
ENCFF819YXT.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 74.2 MB
ENCFF835AKL.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 71.2 MB
ENCFF836SGI.bam bam (alignments); assembly: hg19; genome annotation: V19 3.4 GB
ENCFF837DIU.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 90.1 MB
ENCFF856VTZ.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 81.7 MB
ENCFF861ENO.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 14.9 MB
ENCFF904WDX.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 4.4 GB
ENCFF918YKI.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 79.9 MB
ENCFF933BVH.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 76.3 MB
ENCFF945XQY.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF974LGY.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.4 MB
ENCFF996WVS.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 73.1 MB
ENCFF999ZNH.bam bam (alignments); assembly: GRCh38; genome annotation: V29 4.1 GB
ENCSR529GSJ ENCSR · via encode_api

eCLIP experiment on K562 against DHX30

Homo sapiens

34 data files
FileTypeSize
ENCFF028SVZ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 11.2 MB
ENCFF050FPH.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 5.6 MB
ENCFF116KYR.fastq fastq (reads) 526.8 MB
ENCFF128AKC.bed bed (peaks); assembly: GRCh38 21.0 KB
ENCFF134SKQ.bigBed bigBed (peaks); assembly: GRCh38 1.3 MB
ENCFF148LOE.bed bed (peaks); assembly: hg19 512.1 KB
ENCFF162KHT.bed bed (peaks); assembly: GRCh38 750.6 KB
ENCFF168DFB.bigBed bigBed (peaks); assembly: GRCh38 1.8 MB
ENCFF188QPT.bigBed bigBed (peaks); assembly: GRCh38 466.2 KB
ENCFF238BOS.fastq fastq (reads) 456.2 MB
ENCFF241EWR.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 6.2 MB
ENCFF262GIM.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 5.9 MB
ENCFF263FVL.bigBed bigBed (peaks); assembly: hg19 1.4 MB
ENCFF301IKV.bam bam (alignments); assembly: hg19 197.5 MB
ENCFF413RCX.fastq fastq (reads) 539.4 MB
ENCFF430GFT.bigBed bigBed (peaks); assembly: hg19 1.8 MB
ENCFF445FRC.bam bam (alignments); assembly: GRCh38 125.3 MB
ENCFF466HOC.bed bed (peaks); assembly: GRCh38 185.0 KB
ENCFF485NXM.bed bed (peaks); assembly: hg19 22.1 KB
ENCFF507AKH.bed bed (peaks); assembly: hg19 1.0 MB
ENCFF510RNY.fastq fastq (reads) 465.9 MB
ENCFF513KIB.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 8.3 MB
ENCFF601SZL.bed bed (peaks); assembly: hg19 465.0 KB
ENCFF634UAJ.bed bed (peaks); assembly: hg19 789.7 KB
ENCFF642SST.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 5.8 MB
ENCFF643ZIN.bigBed bigBed (peaks); assembly: GRCh38 378.9 KB
ENCFF687ZTQ.bigBed bigBed (peaks); assembly: hg19 1019.5 KB
ENCFF697MVO.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 7.9 MB
ENCFF746LFQ.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 8.1 MB
ENCFF803KPC.bed bed (peaks); assembly: GRCh38 1.0 MB
ENCFF845MNN.bam bam (alignments); assembly: GRCh38 191.4 MB
ENCFF846CJI.bam bam (alignments); assembly: hg19 134.3 MB
ENCFF888NHP.bigBed bigBed (peaks); assembly: hg19 956.8 KB
ENCFF907ZFN.bed bed (peaks); assembly: GRCh38 173.4 KB
ENCSR584TCR ENCSR · via encode_api

eCLIP experiment on K562 against TDP43

Homo sapiens

36 data files
FileTypeSize
ENCFF022DCK.bigBed bigBed (peaks); assembly: GRCh38 1.6 MB
ENCFF037TVC.bed bed (peaks); assembly: GRCh38 148.7 KB
ENCFF118WWO.bigBed bigBed (peaks); assembly: GRCh38 2.1 MB
ENCFF147JYD.fastq fastq (reads) 200.7 MB
ENCFF195CIQ.bigBed bigBed (peaks); assembly: GRCh38 715.0 KB
ENCFF218BOC.fastq fastq (reads) 254.6 MB
ENCFF242QQJ.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 10.4 MB
ENCFF259NLI.bed bed (peaks); assembly: hg19 145.3 KB
ENCFF281ELS.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 10.5 MB
ENCFF333KPU.bed bed (peaks); assembly: hg19 1.2 MB
ENCFF392HLM.bigBed bigBed (peaks); assembly: hg19 2.1 MB
ENCFF393WWU.bigBed bigBed (peaks); assembly: hg19 1.6 MB
ENCFF435YMY.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 13.6 MB
ENCFF450IVA.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 10.9 MB
ENCFF453YOD.bam bam (alignments); assembly: hg19 190.7 MB
ENCFF489VNW.bed bed (peaks); assembly: hg19 721.7 KB
ENCFF524PYO.bam bam (alignments); assembly: GRCh38 249.5 MB
ENCFF565CEU.bam bam (alignments); assembly: hg19 252.1 MB
ENCFF569LQN.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 10.8 MB
ENCFF591LPY.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 13.1 MB
ENCFF606RXB.bed bed (peaks); assembly: GRCh38 1.2 MB
ENCFF619APF.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 13.7 MB
ENCFF653KZU.bigBed bigBed (peaks); assembly: GRCh38 484.8 KB
ENCFF661TYX.fastq fastq (reads) 225.0 MB
ENCFF669TNM.bed bed (peaks); assembly: GRCh38 944.0 KB
ENCFF674IET.bigBed bigBed (peaks); assembly: hg19 2.3 MB
ENCFF697CMV.bed bed (peaks); assembly: hg19 938.8 KB
ENCFF706TWA.bigBed bigBed (peaks); assembly: hg19 1.4 MB
ENCFF728SNB.bigBed bigBed (peaks); assembly: hg19 1.1 MB
ENCFF734UEC.fastq fastq (reads) 178.5 MB
ENCFF781KGR.bed bed (peaks); assembly: GRCh38 310.1 KB
ENCFF785PDJ.bed bed (peaks); assembly: hg19 574.0 KB
ENCFF869RDN.bigBed bigBed (peaks); assembly: hg19 2.8 MB
ENCFF916MCG.bed bed (peaks); assembly: GRCh38 244.8 KB
ENCFF923ZPC.bam bam (alignments); assembly: GRCh38 189.0 MB
ENCFF979RKC.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 13.0 MB
ENCSR057DWB ENCSR · via encode_api

eCLIP experiment on K562 against TIA1

Homo sapiens

38 data files
FileTypeSize
ENCFF014QCP.bigBed bigBed (peaks); assembly: GRCh38 915.4 KB
ENCFF017ZEM.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 34.2 MB
ENCFF031JPO.bigBed bigBed (peaks); assembly: GRCh38 6.6 MB
ENCFF080VML.bam bam (alignments); assembly: GRCh38 564.1 MB
ENCFF093IND.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 30.5 MB
ENCFF125CWQ.bigBed bigBed (peaks); assembly: GRCh38 5.9 MB
ENCFF202HXA.bigBed bigBed (peaks); assembly: hg19 5.9 MB
ENCFF248YBJ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 32.1 MB
ENCFF262IWZ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 36.0 MB
ENCFF298ZAG.bed bed (peaks); assembly: hg19 127.2 KB
ENCFF306GFY.bigBed bigBed (peaks); assembly: hg19 2.0 MB
ENCFF314LSF.bam bam (alignments); assembly: hg19 573.2 MB
ENCFF319KAF.bam bam (alignments); assembly: hg19 682.7 MB
ENCFF331OSU.bed bed (peaks); assembly: hg19 1.0 MB
ENCFF348TPU.bed bed (peaks); assembly: GRCh38 3.6 MB
ENCFF399NDL.bigBed bigBed (peaks); assembly: hg19 6.5 MB
ENCFF442UPB.bed bed (peaks); assembly: hg19 1.1 MB
ENCFF459AMC.bed bed (peaks); assembly: GRCh38 389.3 KB
ENCFF477IOM.bed bed (peaks); assembly: hg19 986.0 KB
ENCFF499XGJ.bigBed bigBed (peaks); assembly: GRCh38 984.6 KB
ENCFF509PKA.bed bed (peaks); assembly: hg19 3.2 MB
ENCFF581EBE.bam bam (alignments); assembly: GRCh38 672.5 MB
ENCFF604VPQ.fastq fastq (reads) 662.5 MB
ENCFF635GJU.bed bed (peaks); assembly: hg19 935.2 KB
ENCFF673MNH.bed bed (peaks); assembly: hg19 3.6 MB
ENCFF674TKN.bed bed (peaks); assembly: GRCh38 3.2 MB
ENCFF710AFX.fastq fastq (reads) 647.2 MB
ENCFF769OYZ.bigBed bigBed (peaks); assembly: hg19 2.1 MB
ENCFF782ZMF.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 35.6 MB
ENCFF794KQT.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 30.6 MB
ENCFF820BWG.fastq fastq (reads) 611.9 MB
ENCFF827ZJE.bed bed (peaks); assembly: GRCh38 433.7 KB
ENCFF871ZLL.bam bam (alignments); assembly: hg19 573.2 MB
ENCFF873ZAY.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 34.0 MB
ENCFF893QVN.fastq fastq (reads) 645.8 MB
ENCFF900OHV.bam bam (alignments); assembly: hg19 682.7 MB
ENCFF918KMT.bed bed (peaks); assembly: GRCh38 128.0 KB
ENCFF940BFP.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 31.8 MB
ENCSR490IEE ENCSR · via encode_api

eCLIP experiment on HepG2 against UCHL5

Homo sapiens

36 data files
FileTypeSize
ENCFF007BPN.fastq fastq (reads) 583.5 MB
ENCFF012CKH.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 44.2 MB
ENCFF022FGD.bed bed (peaks); assembly: GRCh38 3.3 MB
ENCFF022GSG.bigBed bigBed (peaks); assembly: hg19 4.8 MB
ENCFF050OHC.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 43.9 MB
ENCFF063XSO.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 30.2 MB
ENCFF101IOW.fastq fastq (reads) 1.0 GB
ENCFF111XBR.bigBed bigBed (peaks); assembly: GRCh38 964.0 KB
ENCFF132YAO.bam bam (alignments); assembly: GRCh38 1.0 GB
ENCFF156QCZ.bed bed (peaks); assembly: GRCh38 401.2 KB
ENCFF171KTG.bed bed (peaks); assembly: hg19 2.4 MB
ENCFF225TVX.bigBed bigBed (peaks); assembly: hg19 3.0 MB
ENCFF226OLL.bigBed bigBed (peaks); assembly: GRCh38 4.8 MB
ENCFF269VTE.bigBed bigBed (peaks); assembly: hg19 5.2 MB
ENCFF305LRB.bed bed (peaks); assembly: hg19 3.3 MB
ENCFF322VWH.fastq fastq (reads) 981.2 MB
ENCFF391KVJ.bed bed (peaks); assembly: hg19 48.0 KB
ENCFF473ZYA.bigBed bigBed (peaks); assembly: hg19 5.7 MB
ENCFF476CPQ.bam bam (alignments); assembly: GRCh38 654.9 MB
ENCFF573DXD.bed bed (peaks); assembly: GRCh38 50.4 KB
ENCFF573KHP.bed bed (peaks); assembly: GRCh38 2.4 MB
ENCFF619QWB.bed bed (peaks); assembly: GRCh38 466.3 KB
ENCFF623ENV.bed bed (peaks); assembly: hg19 1.5 MB
ENCFF642XMP.bam bam (alignments); assembly: hg19 1.0 GB
ENCFF671VFZ.bam bam (alignments); assembly: hg19 687.1 MB
ENCFF677SWL.bed bed (peaks); assembly: hg19 1.3 MB
ENCFF704AZS.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 43.1 MB
ENCFF769IXL.fastq fastq (reads) 620.7 MB
ENCFF769QQG.bigBed bigBed (peaks); assembly: hg19 6.1 MB
ENCFF776ICY.bigBed bigBed (peaks); assembly: GRCh38 1.0 MB
ENCFF887BFF.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 30.3 MB
ENCFF907DUD.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 31.3 MB
ENCFF958DHS.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 45.1 MB
ENCFF975XTM.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 29.3 MB
ENCFF992CXW.bigBed bigBed (peaks); assembly: hg19 2.7 MB
ENCFF994NUD.bigBed bigBed (peaks); assembly: GRCh38 6.1 MB
ENCSR252RIJ ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) pulldown experiment against SRSF4

13 data files
FileTypeSize
ENCFF166TCK.tsv tsv (enrichment) 992.0 KB
ENCFF185UAE.tsv tsv (enrichment) 60.0 KB
ENCFF225NRS.tsv tsv (library fraction) 75.1 KB
ENCFF298ZWZ.tsv tsv (enrichment) 14.8 KB
ENCFF424VHK.fastq fastq (reads) 207.8 MB
ENCFF659GOB.fastq fastq (reads) 188.7 MB
ENCFF661GML.tsv tsv (library fraction) 17.8 KB
ENCFF695JWD.fastq fastq (reads) 283.4 MB
ENCFF707DGD.fastq fastq (reads) 225.4 MB
ENCFF773PVD.tsv tsv (library fraction) 1.2 MB
ENCFF801NRU.fastq fastq (reads) 212.3 MB
ENCFF908WYK.tsv tsv (library fraction) 313.3 KB
ENCFF975KOB.tsv tsv (enrichment) 244.0 KB
ENCSR082AKW ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) pulldown experiment against ESRP1

11 data files
FileTypeSize
ENCFF069CQR.tsv tsv (library fraction) 75.2 KB
ENCFF193SAI.tsv tsv (enrichment) 60.0 KB
ENCFF201IIS.fastq fastq (reads) 203.7 MB
ENCFF249MKN.fastq fastq (reads) 222.8 MB
ENCFF437RJK.tsv tsv (library fraction) 17.8 KB
ENCFF497OVV.fastq fastq (reads) 226.8 MB
ENCFF709NVS.fastq fastq (reads) 213.0 MB
ENCFF830CCN.tsv tsv (library fraction) 313.1 KB
ENCFF841SRB.tsv tsv (enrichment) 244.0 KB
ENCFF866SSJ.fastq fastq (reads) 206.1 MB
ENCFF924ZUX.tsv tsv (enrichment) 14.8 KB
ENCSR845GNW ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) pulldown experiment against PUM1

15 data files
FileTypeSize
ENCFF031GWM.tsv tsv (enrichment) 688.1 KB
ENCFF056YLH.tsv tsv (enrichment) 41.0 KB
ENCFF090QVU.fastq fastq (reads) 270.7 MB
ENCFF126IQM.bed bed (peaks) 418.0 KB
ENCFF266PHU.fastq fastq (reads) 287.5 MB
ENCFF345UJY.fastq fastq (reads) 299.7 MB
ENCFF400IBT.tsv tsv (library fraction) 1.1 MB
ENCFF519SMF.tsv tsv (enrichment) 10.0 KB
ENCFF537LES.tsv tsv (library fraction) 265.1 KB
ENCFF574TBN.fastq fastq (reads) 212.6 MB
ENCFF648TBV.bed bed (peaks) 167.2 KB
ENCFF704EBI.tsv tsv (library fraction) 64.4 KB
ENCFF894MLG.fastq fastq (reads) 270.8 MB
ENCFF955ZGE.tsv tsv (library fraction) 15.3 KB
ENCFF966LVC.tsv tsv (enrichment) 168.0 KB
ENCSR620OKS ENCSR · via encode_api

shRNA knockdown against EFTUD2 in HepG2 cells followed by RNA-seq. (EFTUD2_BGHLV16)

Homo sapiens

92 data files
FileTypeSize
ENCFF009SPX.bigWig bigWig (plus strand signal of all reads) 82.5 MB
ENCFF009UNT.bam bam (alignments) 3.6 GB
ENCFF021HKH.bigWig bigWig (minus strand signal of unique reads) 72.4 MB
ENCFF031XYP.bigWig bigWig (plus strand signal of all reads) 82.6 MB
ENCFF036JHA.bam bam (alignments) 4.3 GB
ENCFF039BLK.bam bam (alignments) 4.2 GB
ENCFF050RKS.bigWig bigWig (minus strand signal of unique reads) 72.8 MB
ENCFF055YKQ.tar tar (differential splicing quantifications) 13.8 MB
ENCFF061FKD.bigWig bigWig (minus strand signal of unique reads) 68.8 MB
ENCFF067VBR.bigWig bigWig (plus strand signal of unique reads) 71.2 MB
ENCFF077IHZ.bigWig bigWig (minus strand signal of all reads) 81.0 MB
ENCFF094OUF.bam bam (transcriptome alignments) 6.0 GB
ENCFF100GCA.bam bam (alignments) 4.3 GB
ENCFF107OMK.bigWig bigWig (minus strand signal of all reads) 81.1 MB
ENCFF110YDN.bigWig bigWig (plus strand signal of unique reads) 70.5 MB
ENCFF122BEU.bigWig bigWig (minus strand signal of unique reads) 72.9 MB
ENCFF129JTT.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF131HSQ.bigWig bigWig (plus strand signal of all reads) 74.4 MB
ENCFF149WKD.bam bam (alignments) 4.2 GB
ENCFF156VYR.fastq fastq (reads) 2.3 GB
ENCFF157QEV.bigWig bigWig (plus strand signal of unique reads) 66.9 MB
ENCFF183JMG.tsv tsv (differential expression quantifications) 1.8 MB
ENCFF191SCC.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF193UWA.bigWig bigWig (minus strand signal of all reads) 81.0 MB
ENCFF193ZBV.bigWig bigWig (plus strand signal of all reads) 72.0 MB
ENCFF199YZK.bigWig bigWig (minus strand signal of all reads) 73.9 MB
ENCFF221EGZ.bam bam (transcriptome alignments) 5.3 GB
ENCFF224CPN.bigWig bigWig (plus strand signal of all reads) 81.8 MB
ENCFF242RPJ.fastq fastq (reads) 2.3 GB
ENCFF278HGK.bigWig bigWig (plus strand signal of unique reads) 66.7 MB
ENCFF290VJC.bigWig bigWig (plus strand signal of all reads) 82.5 MB
ENCFF310MNA.bigWig bigWig (minus strand signal of unique reads) 64.9 MB
ENCFF314KBM.bigWig bigWig (minus strand signal of all reads) 80.4 MB
ENCFF344KYD.tar tar (differential splicing quantifications) 3.6 MB
ENCFF361TTF.bigWig bigWig (plus strand signal of all reads) 81.4 MB
ENCFF365ONM.bigWig bigWig (minus strand signal of unique reads) 72.9 MB
ENCFF372AFS.bam bam (alignments) 4.3 GB
ENCFF372XCO.bigWig bigWig (minus strand signal of all reads) 72.6 MB
ENCFF388HVN.fastq fastq (reads) 2.4 GB
ENCFF392YFD.bigWig bigWig (plus strand signal of all reads) 75.4 MB
ENCFF394HAG.bigWig bigWig (minus strand signal of all reads) 70.5 MB
ENCFF399PXW.bigWig bigWig (minus strand signal of all reads) 73.1 MB
ENCFF426KTK.bigWig bigWig (minus strand signal of unique reads) 64.9 MB
ENCFF431CKH.bigWig bigWig (plus strand signal of unique reads) 74.4 MB
ENCFF440QZG.tsv tsv (gene quantifications) 10.4 MB
ENCFF441HQL.tsv tsv (transcript quantifications) 24.9 MB
ENCFF450AND.bigWig bigWig (plus strand signal of unique reads) 74.3 MB
ENCFF473RIO.bam bam (alignments) 3.6 GB
ENCFF482HSK.bigWig bigWig (plus strand signal of all reads) 73.9 MB
ENCFF492IJO.tsv tsv (transcript quantifications) 24.9 MB
ENCFF493YPD.tsv tsv (gene quantifications) 9.4 MB
ENCFF511LCI.bigWig bigWig (minus strand signal of unique reads) 72.3 MB
ENCFF512CUJ.tsv tsv (transcript quantifications) 27.4 MB
ENCFF514LVN.bigWig bigWig (minus strand signal of all reads) 80.1 MB
ENCFF523GBL.bam bam (transcriptome alignments) 5.3 GB
ENCFF579ECJ.tsv tsv (transcript quantifications) 29.8 MB
ENCFF579TYJ.bigWig bigWig (minus strand signal of unique reads) 68.9 MB
ENCFF580LLO.bigWig bigWig (plus strand signal of unique reads) 74.7 MB
ENCFF580RHL.bigWig bigWig (plus strand signal of unique reads) 74.8 MB
ENCFF635LZB.bigWig bigWig (plus strand signal of unique reads) 74.0 MB
ENCFF635PEZ.tsv tsv (transcript quantifications) 29.8 MB
ENCFF662YCZ.fastq fastq (reads) 2.4 GB
ENCFF675PJD.bam bam (transcriptome alignments) 5.3 GB
ENCFF678DMZ.bigWig bigWig (plus strand signal of unique reads) 70.6 MB
ENCFF685NCU.bam bam (transcriptome alignments) 5.9 GB
ENCFF686SPF.bigWig bigWig (minus strand signal of unique reads) 72.0 MB
ENCFF694MEF.tsv tsv (gene quantifications) 10.4 MB
ENCFF715GAL.bigWig bigWig (minus strand signal of all reads) 81.2 MB
ENCFF718GZU.bam bam (alignments) 3.6 GB
ENCFF718UBL.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF719XRX.bigWig bigWig (minus strand signal of all reads) 73.8 MB
ENCFF768AQW.bigWig bigWig (plus strand signal of unique reads) 74.8 MB
ENCFF773ZIR.tsv tsv (transcript quantifications) 25.3 MB
ENCFF791ANV.tar tar (differential splicing quantifications) 3.2 MB
ENCFF796CWN.bigWig bigWig (plus strand signal of all reads) 71.4 MB
ENCFF806BXY.tsv tsv (transcript quantifications) 25.3 MB
ENCFF831NRD.tsv tsv (differential expression quantifications) 4.2 MB
ENCFF871MMC.bam bam (alignments) 4.3 GB
ENCFF882JWS.bigWig bigWig (minus strand signal of unique reads) 69.3 MB
ENCFF892JYS.bigWig bigWig (plus strand signal of unique reads) 70.6 MB
ENCFF901SHL.bam bam (alignments) 3.6 GB
ENCFF904ZQH.bigWig bigWig (plus strand signal of all reads) 75.3 MB
ENCFF905LKI.bigWig bigWig (minus strand signal of unique reads) 68.7 MB
ENCFF922UIP.tsv tsv (gene quantifications) 9.1 MB
ENCFF930OPG.bam bam (transcriptome alignments) 5.3 GB
ENCFF935PWG.tsv tsv (gene quantifications) 9.1 MB
ENCFF940TQY.tsv tsv (gene quantifications) 9.4 MB
ENCFF944XRD.bam bam (alignments) 3.6 GB
ENCFF955MKP.bigWig bigWig (minus strand signal of all reads) 69.9 MB
ENCFF956WHP.tsv tsv (transcript quantifications) 27.4 MB
ENCFF990MFT.bam bam (alignments) 3.6 GB
ENCFF998DVR.bigWig bigWig (plus strand signal of all reads) 82.6 MB
ENCSR907UTB ENCSR · via encode_api

shRNA knockdown against DAZAP1 in K562 cells followed by RNA-seq. (DAZAP1 BGKLV13)

Homo sapiens

92 data files
FileTypeSize
ENCFF009FES.bam bam (alignments) 5.0 GB
ENCFF035EVP.bigWig bigWig (minus strand signal of all reads) 91.0 MB
ENCFF036QID.fastq fastq (reads) 2.6 GB
ENCFF046FWG.bam bam (alignments) 5.0 GB
ENCFF048UVJ.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF054ALA.bigWig bigWig (plus strand signal of unique reads) 76.5 MB
ENCFF058KEJ.fastq fastq (reads) 2.6 GB
ENCFF066TSL.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF075SBY.bigWig bigWig (plus strand signal of unique reads) 85.1 MB
ENCFF084ZJE.bigWig bigWig (minus strand signal of unique reads) 73.9 MB
ENCFF088ISS.bigWig bigWig (minus strand signal of all reads) 92.5 MB
ENCFF097OIM.bam bam (alignments) 4.3 GB
ENCFF113VRR.bigWig bigWig (plus strand signal of all reads) 95.6 MB
ENCFF122VVJ.bigWig bigWig (plus strand signal of all reads) 87.8 MB
ENCFF137PII.bigWig bigWig (plus strand signal of all reads) 93.5 MB
ENCFF139CXZ.bigWig bigWig (plus strand signal of all reads) 85.4 MB
ENCFF140QAZ.fastq fastq (reads) 2.7 GB
ENCFF142IYS.tsv tsv (gene quantifications) 9.1 MB
ENCFF143JZA.bigWig bigWig (plus strand signal of unique reads) 78.4 MB
ENCFF164KTU.bigWig bigWig (minus strand signal of all reads) 84.0 MB
ENCFF166NAQ.bam bam (alignments) 4.8 GB
ENCFF168UGN.bigWig bigWig (plus strand signal of all reads) 86.4 MB
ENCFF169UST.bigWig bigWig (minus strand signal of unique reads) 81.9 MB
ENCFF175OXS.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF189XKB.bigWig bigWig (plus strand signal of unique reads) 85.6 MB
ENCFF212HLQ.tsv tsv (transcript quantifications) 25.3 MB
ENCFF214TEN.bigWig bigWig (plus strand signal of unique reads) 79.3 MB
ENCFF224TGR.bam bam (alignments) 5.0 GB
ENCFF252KJN.tsv tsv (gene quantifications) 9.1 MB
ENCFF278AOF.bigWig bigWig (minus strand signal of unique reads) 74.7 MB
ENCFF301IEW.bigWig bigWig (minus strand signal of all reads) 80.4 MB
ENCFF304WQG.bam bam (alignments) 6.2 GB
ENCFF304ZSG.bam bam (alignments) 4.1 GB
ENCFF319LNJ.tsv tsv (gene quantifications) 10.4 MB
ENCFF321KLA.tar tar (differential splicing quantifications) 15.4 MB
ENCFF335TCM.bigWig bigWig (minus strand signal of unique reads) 83.4 MB
ENCFF349PVP.tsv tsv (transcript quantifications) 24.9 MB
ENCFF383ZHW.bam bam (alignments) 4.2 GB
ENCFF394AJI.tar tar (differential splicing quantifications) 4.4 MB
ENCFF395OTJ.bigWig bigWig (minus strand signal of all reads) 81.4 MB
ENCFF399HIG.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF418KRM.bigWig bigWig (plus strand signal of all reads) 91.9 MB
ENCFF423MDQ.bigWig bigWig (minus strand signal of unique reads) 81.8 MB
ENCFF423QAL.bigWig bigWig (minus strand signal of all reads) 86.5 MB
ENCFF425SKO.tsv tsv (transcript quantifications) 29.8 MB
ENCFF439SRO.bam bam (transcriptome alignments) 5.7 GB
ENCFF462JEW.bigWig bigWig (plus strand signal of all reads) 94.3 MB
ENCFF493BXE.bigWig bigWig (plus strand signal of all reads) 95.5 MB
ENCFF500SVS.bigWig bigWig (minus strand signal of unique reads) 78.4 MB
ENCFF520KIQ.bigWig bigWig (plus strand signal of all reads) 81.7 MB
ENCFF527JSQ.bigWig bigWig (minus strand signal of all reads) 85.5 MB
ENCFF560FIY.bam bam (alignments) 6.2 GB
ENCFF578DLO.tsv tsv (gene quantifications) 10.4 MB
ENCFF601BKS.bigWig bigWig (minus strand signal of unique reads) 78.5 MB
ENCFF615KIJ.bigWig bigWig (plus strand signal of unique reads) 83.5 MB
ENCFF616CJO.bigWig bigWig (minus strand signal of all reads) 83.6 MB
ENCFF618ROC.tsv tsv (transcript quantifications) 27.4 MB
ENCFF624OEL.tsv tsv (gene quantifications) 9.4 MB
ENCFF632NGF.bigWig bigWig (minus strand signal of unique reads) 84.0 MB
ENCFF640KOM.bigWig bigWig (minus strand signal of unique reads) 83.3 MB
ENCFF686VYC.bam bam (transcriptome alignments) 5.6 GB
ENCFF691EJT.bigWig bigWig (plus strand signal of all reads) 84.5 MB
ENCFF691QPB.bam bam (alignments) 4.3 GB
ENCFF694QRX.bigWig bigWig (plus strand signal of unique reads) 79.8 MB
ENCFF707TGY.bigWig bigWig (minus strand signal of unique reads) 77.5 MB
ENCFF714UYX.bigWig bigWig (plus strand signal of unique reads) 75.7 MB
ENCFF719UXJ.bigWig bigWig (plus strand signal of unique reads) 85.0 MB
ENCFF721HKP.tsv tsv (gene quantifications) 9.5 MB
ENCFF729DRY.bigWig bigWig (minus strand signal of all reads) 94.6 MB
ENCFF753BUM.bigWig bigWig (plus strand signal of all reads) 93.5 MB
ENCFF780NIM.tsv tsv (differential expression quantifications) 4.2 MB
ENCFF783BYA.bigWig bigWig (minus strand signal of all reads) 93.4 MB
ENCFF802YVN.bam bam (alignments) 4.1 GB
ENCFF808CFQ.bigWig bigWig (minus strand signal of all reads) 92.5 MB
ENCFF816POX.bigWig bigWig (plus strand signal of all reads) 82.6 MB
ENCFF827HZN.bam bam (transcriptome alignments) 5.7 GB
ENCFF835EBA.bam bam (alignments) 5.0 GB
ENCFF843GDF.tsv tsv (transcript quantifications) 24.9 MB
ENCFF844XEH.bigWig bigWig (minus strand signal of unique reads) 81.4 MB
ENCFF858LRN.tsv tsv (transcript quantifications) 25.3 MB
ENCFF863ITD.fastq fastq (reads) 2.7 GB
ENCFF882CSU.tsv tsv (transcript quantifications) 29.8 MB
ENCFF882FWY.bam bam (transcriptome alignments) 6.3 GB
ENCFF887VSE.bigWig bigWig (plus strand signal of unique reads) 80.2 MB
ENCFF894HRH.bigWig bigWig (minus strand signal of unique reads) 77.0 MB
ENCFF896WFF.bigWig bigWig (plus strand signal of unique reads) 83.1 MB
ENCFF900WMI.tar tar (differential splicing quantifications) 3.7 MB
ENCFF925TII.bam bam (transcriptome alignments) 5.7 GB
ENCFF928RUH.bigWig bigWig (plus strand signal of unique reads) 83.8 MB
ENCFF928UCL.tsv tsv (transcript quantifications) 27.4 MB
ENCFF931LLE.bigWig bigWig (minus strand signal of all reads) 94.7 MB
ENCFF951MJH.bam bam (transcriptome alignments) 6.4 GB
ENCSR234LUY ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) input control experiment of SRSF4

1 data file
FileTypeSize
ENCFF472NVZ.fastq fastq (reads) 291.7 MB
ENCSR820DQJ ENCSR · via encode_api

eCLIP experiment on HepG2 against NOL12

Homo sapiens

36 data files
FileTypeSize
ENCFF009PAA.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 5.1 MB
ENCFF038OXX.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 5.0 MB
ENCFF047PZR.bed bed (peaks); assembly: hg19 7.2 KB
ENCFF078UAE.bed bed (peaks); assembly: GRCh38 147.3 KB
ENCFF087FYK.bed bed (peaks); assembly: GRCh38 890.7 KB
ENCFF107XVX.bigBed bigBed (peaks); assembly: GRCh38 420.5 KB
ENCFF134IIH.bam bam (alignments); assembly: GRCh38 99.6 MB
ENCFF160ZHG.bam bam (alignments); assembly: hg19 105.7 MB
ENCFF241ABH.fastq fastq (reads) 593.3 MB
ENCFF306ZNQ.bed bed (peaks); assembly: hg19 437.9 KB
ENCFF325BSW.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 4.9 MB
ENCFF333DNO.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 8.7 MB
ENCFF378YBS.bigBed bigBed (peaks); assembly: hg19 1.6 MB
ENCFF429WKY.bigBed bigBed (peaks); assembly: GRCh38 391.7 KB
ENCFF483TJU.fastq fastq (reads) 565.9 MB
ENCFF506LVL.bed bed (peaks); assembly: GRCh38 517.4 KB
ENCFF515WRY.bed bed (peaks); assembly: hg19 540.5 KB
ENCFF532KFY.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 5.3 MB
ENCFF585HPQ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 8.9 MB
ENCFF589NWW.bigBed bigBed (peaks); assembly: GRCh38 974.8 KB
ENCFF694CAN.bigBed bigBed (peaks); assembly: hg19 1021.5 KB
ENCFF716SCR.bed bed (peaks); assembly: hg19 916.3 KB
ENCFF722JFH.bam bam (alignments); assembly: GRCh38 186.9 MB
ENCFF746WOI.bed bed (peaks); assembly: GRCh38 161.4 KB
ENCFF765OCP.fastq fastq (reads) 610.4 MB
ENCFF808JBC.bigBed bigBed (peaks); assembly: hg19 861.1 KB
ENCFF814JGB.bigBed bigBed (peaks); assembly: hg19 1018.8 KB
ENCFF817NNY.bigBed bigBed (peaks); assembly: GRCh38 1.6 MB
ENCFF821NNN.bam bam (alignments); assembly: hg19 193.6 MB
ENCFF833LUK.bigBed bigBed (peaks); assembly: hg19 2.0 MB
ENCFF900ABY.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 8.5 MB
ENCFF906PLZ.fastq fastq (reads) 637.0 MB
ENCFF914WFQ.bed bed (peaks); assembly: GRCh38 7.0 KB
ENCFF920OZH.bed bed (peaks); assembly: hg19 527.3 KB
ENCFF927YPS.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 11.5 MB
ENCFF957MPZ.bigBed bigBed (peaks); assembly: hg19 1.6 MB
ENCSR291XPT ENCSR · via encode_api

eCLIP experiment on K562 against PUS1

Homo sapiens

34 data files
FileTypeSize
ENCFF049SUS.fastq fastq (reads) 689.4 MB
ENCFF053SPH.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 10.0 MB
ENCFF064GVD.bigBed bigBed (peaks); assembly: GRCh38 389.1 KB
ENCFF098UHH.bam bam (alignments); assembly: GRCh38 166.7 MB
ENCFF129INC.bigBed bigBed (peaks); assembly: GRCh38 1.3 MB
ENCFF236ACF.bigBed bigBed (peaks); assembly: hg19 713.7 KB
ENCFF247NXL.bed bed (peaks); assembly: GRCh38 895.0 B
ENCFF256TFB.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 2.6 MB
ENCFF268XIE.bed bed (peaks); assembly: hg19 770.9 KB
ENCFF318MQO.bed bed (peaks); assembly: hg19 330.7 KB
ENCFF320HAD.fastq fastq (reads) 751.0 MB
ENCFF334MWZ.bam bam (alignments); assembly: hg19 47.1 MB
ENCFF389JHH.bed bed (peaks); assembly: GRCh38 183.7 KB
ENCFF459KBL.bigBed bigBed (peaks); assembly: GRCh38 334.1 KB
ENCFF470JIH.bed bed (peaks); assembly: hg19 657.0 B
ENCFF479SQA.fastq fastq (reads) 225.8 MB
ENCFF489AEX.bam bam (alignments); assembly: hg19 174.0 MB
ENCFF509ACI.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 9.7 MB
ENCFF552FLR.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 2.7 MB
ENCFF560YRG.bed bed (peaks); assembly: GRCh38 68.3 KB
ENCFF567WPT.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 2.7 MB
ENCFF603CDW.bigBed bigBed (peaks); assembly: hg19 1.4 MB
ENCFF644LCK.bigBed bigBed (peaks); assembly: GRCh38 212.8 KB
ENCFF713FGP.bed bed (peaks); assembly: hg19 151.7 KB
ENCFF761HNN.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 2.5 MB
ENCFF824TUZ.bam bam (alignments); assembly: GRCh38 45.9 MB
ENCFF877UIT.bigBed bigBed (peaks); assembly: hg19 394.7 KB
ENCFF883KAB.bigBed bigBed (peaks); assembly: hg19 349.5 KB
ENCFF904FWY.bed bed (peaks); assembly: GRCh38 741.1 KB
ENCFF906EMD.fastq fastq (reads) 206.6 MB
ENCFF908YJN.bed bed (peaks); assembly: GRCh38 116.0 KB
ENCFF951UFE.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 9.6 MB
ENCFF985YQV.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 9.2 MB
ENCFF990JXJ.bed bed (peaks); assembly: hg19 187.9 KB
ENCSR543TPH ENCSR · via encode_api

eCLIP experiment on HepG2 against AGGF1

Homo sapiens

36 data files
FileTypeSize
ENCFF031POH.bigBed bigBed (peaks) 3.7 MB
ENCFF036HIA.bam bam (alignments) 695.0 MB
ENCFF061KAN.bigWig bigWig (minus strand signal of unique reads) 29.8 MB
ENCFF082GTJ.bigWig bigWig (minus strand signal of unique reads) 22.4 MB
ENCFF105HLG.bigWig bigWig (minus strand signal of unique reads) 28.8 MB
ENCFF139PUX.fastq fastq (reads) 574.5 MB
ENCFF164QUS.fastq fastq (reads) 705.6 MB
ENCFF208VFO.fastq fastq (reads) 660.1 MB
ENCFF214URR.bed bed (peaks) 908.2 KB
ENCFF217AOH.bigWig bigWig (plus strand signal of unique reads) 29.8 MB
ENCFF220HXJ.bigBed bigBed (peaks) 3.0 MB
ENCFF249CVU.bam bam (alignments) 533.8 MB
ENCFF273EAT.bigBed bigBed (peaks) 3.8 MB
ENCFF283MCJ.bed bed (peaks) 1.9 MB
ENCFF302BJD.bam bam (alignments) 664.1 MB
ENCFF306RCT.bigBed bigBed (peaks) 1.9 MB
ENCFF388PDG.bed bed (peaks) 2.8 MB
ENCFF410IYU.bigBed bigBed (peaks) 1.4 MB
ENCFF590RYI.bigWig bigWig (plus strand signal of unique reads) 30.9 MB
ENCFF617LAH.bed bed (peaks) 89.7 KB
ENCFF631WSW.bed bed (peaks) 296.8 KB
ENCFF632ZWR.bigBed bigBed (peaks) 5.3 MB
ENCFF654QLO.bed bed (peaks) 208.8 KB
ENCFF657LSN.bigWig bigWig (plus strand signal of unique reads) 22.9 MB
ENCFF673EQX.bed bed (peaks) 2.7 MB
ENCFF689ZAK.bed bed (peaks) 671.5 KB
ENCFF737WJV.bigBed bigBed (peaks) 2.3 MB
ENCFF738HMR.bigWig bigWig (minus strand signal of unique reads) 23.6 MB
ENCFF752CZC.bigBed bigBed (peaks) 485.4 KB
ENCFF860RNX.bigBed bigBed (peaks) 5.4 MB
ENCFF936QKU.bed bed (peaks) 1.8 MB
ENCFF939TIW.bigBed bigBed (peaks) 631.5 KB
ENCFF948TWD.bam bam (alignments) 564.5 MB
ENCFF958HKG.fastq fastq (reads) 612.9 MB
ENCFF992LCW.bed bed (peaks) 90.4 KB
ENCFF995SUK.bigWig bigWig (plus strand signal of unique reads) 24.1 MB
ENCSR820WHR ENCSR · via encode_api

eCLIP experiment on HepG2 against POLR2G

Homo sapiens

28 data files
FileTypeSize
ENCFF004PFP.bed bed (peaks) 383.8 KB
ENCFF014MZO.bed bed (peaks) 1.5 KB
ENCFF042CEP.bigWig bigWig (plus strand signal of unique reads) 17.8 MB
ENCFF045AEV.bed bed (peaks) 1.9 MB
ENCFF048PAF.bigWig bigWig (plus strand signal of unique reads) 14.0 MB
ENCFF061RCA.bigWig bigWig (plus strand signal of unique reads) 18.1 MB
ENCFF079ZKD.bed bed (peaks) 1.4 MB
ENCFF086EHM.fastq fastq (reads) 530.8 MB
ENCFF184PPV.bigWig bigWig (minus strand signal of unique reads) 17.4 MB
ENCFF199INE.bigBed bigBed (peaks) 2.3 MB
ENCFF219FAE.fastq fastq (reads) 529.7 MB
ENCFF290GPH.bigBed bigBed (peaks) 2.9 MB
ENCFF365BHW.bigWig bigWig (plus strand signal of unique reads) 14.3 MB
ENCFF385AIL.bam bam (alignments) 254.6 MB
ENCFF429JCN.bam bam (alignments) 262.9 MB
ENCFF460SKC.bam bam (alignments) 339.6 MB
ENCFF486DVN.bed bed (peaks) 414.1 KB
ENCFF497VHY.fastq fastq (reads) 518.4 MB
ENCFF527HFU.bigBed bigBed (peaks) 2.9 MB
ENCFF544TEP.bigWig bigWig (minus strand signal of unique reads) 13.4 MB
ENCFF591BUK.bed bed (peaks) 1.5 KB
ENCFF624BGB.bigWig bigWig (minus strand signal of unique reads) 17.2 MB
ENCFF635IBM.bed bed (peaks) 1.9 MB
ENCFF749CYD.bed bed (peaks) 1.4 MB
ENCFF760EDL.bigBed bigBed (peaks) 2.2 MB
ENCFF783TNF.bam bam (alignments) 346.3 MB
ENCFF865UYY.fastq fastq (reads) 512.3 MB
ENCFF983IBZ.bigWig bigWig (minus strand signal of unique reads) 13.7 MB
ENCSR351PVI ENCSR · via encode_api

eCLIP experiment on HepG2 against SLTM

Homo sapiens

36 data files
FileTypeSize
ENCFF021KOR.bam bam (alignments) 358.4 MB
ENCFF040YXD.bigBed bigBed (peaks) 634.8 KB
ENCFF049EQG.bed bed (peaks) 547.8 KB
ENCFF065END.fastq fastq (reads) 231.6 MB
ENCFF076LTL.bed bed (peaks) 102.9 KB
ENCFF082MTD.bigWig bigWig (plus strand signal of unique reads) 20.6 MB
ENCFF083YUQ.bigBed bigBed (peaks) 1.9 MB
ENCFF086FAD.bigWig bigWig (minus strand signal of unique reads) 20.2 MB
ENCFF105HLP.bigWig bigWig (minus strand signal of unique reads) 20.1 MB
ENCFF121RVH.bed bed (peaks) 27.0 KB
ENCFF125BHF.bam bam (alignments) 143.1 MB
ENCFF142LPF.fastq fastq (reads) 239.2 MB
ENCFF201XIY.bam bam (alignments) 142.0 MB
ENCFF208JVP.fastq fastq (reads) 290.4 MB
ENCFF214GAX.bigBed bigBed (peaks) 3.3 MB
ENCFF233GXU.bigBed bigBed (peaks) 266.5 KB
ENCFF241UUY.bigBed bigBed (peaks) 1.2 MB
ENCFF364FAX.bigBed bigBed (peaks) 1.2 MB
ENCFF447RUX.bigWig bigWig (plus strand signal of unique reads) 7.7 MB
ENCFF487JJR.bigBed bigBed (peaks) 1.3 MB
ENCFF510GIR.bigBed bigBed (peaks) 3.3 MB
ENCFF613KGS.bigWig bigWig (plus strand signal of unique reads) 20.7 MB
ENCFF629HGT.bigWig bigWig (minus strand signal of unique reads) 7.5 MB
ENCFF636UAR.bigBed bigBed (peaks) 1.3 MB
ENCFF637CLF.bigBed bigBed (peaks) 543.3 KB
ENCFF663JSG.bigWig bigWig (minus strand signal of unique reads) 7.5 MB
ENCFF725FNJ.bed bed (peaks) 761.1 KB
ENCFF736YMC.bam bam (alignments) 361.6 MB
ENCFF836HBV.bed bed (peaks) 196.3 KB
ENCFF837ZOX.bed bed (peaks) 27.9 KB
ENCFF870XZV.bed bed (peaks) 760.8 KB
ENCFF892IWC.bed bed (peaks) 1.7 MB
ENCFF957GRM.bed bed (peaks) 1.7 MB
ENCFF958NRC.fastq fastq (reads) 280.4 MB
ENCFF972AEX.bed bed (peaks) 276.1 KB
ENCFF991OLB.bigWig bigWig (plus strand signal of unique reads) 7.7 MB
ENCSR641PRC ENCSR · via encode_api

eCLIP control experiment on HepG2 against SUB1

Homo sapiens

8 data files
FileTypeSize
ENCFF184TPS.bigWig bigWig (plus strand signal of unique reads) 11.1 MB
ENCFF298VBU.bigWig bigWig (minus strand signal of unique reads) 10.7 MB
ENCFF402KQE.bam bam (alignments) 210.5 MB
ENCFF511JHV.bigWig bigWig (plus strand signal of unique reads) 11.0 MB
ENCFF694OPV.bigWig bigWig (minus strand signal of unique reads) 10.6 MB
ENCFF723IPF.bam bam (alignments) 211.6 MB
ENCFF838LHV.fastq fastq (reads) 660.1 MB
ENCFF988APT.fastq fastq (reads) 619.5 MB
ENCSR828YEB ENCSR · via encode_api

Control CRISPR gRNA against no target in K562 cells followed by RNA-seq. (NT_BGKcLV04)

Homo sapiens

84 data files
FileTypeSize
ENCFF021KBD.bam bam (transcriptome alignments) 2.7 GB
ENCFF045SQQ.bam bam (alignments) 2.5 GB
ENCFF058XTD.bam bam (alignments) 2.1 GB
ENCFF098ASY.tsv tsv (transcript quantifications) 25.0 MB
ENCFF103XDC.bigWig bigWig (plus strand signal of all reads) 59.7 MB
ENCFF130WJT.bam bam (transcriptome alignments) 3.0 GB
ENCFF132WCV.bigWig bigWig (minus strand signal of unique reads) 50.5 MB
ENCFF132YJJ.tsv tsv (transcript quantifications) 29.9 MB
ENCFF134WIV.bigWig bigWig (plus strand signal of unique reads) 51.4 MB
ENCFF139DLD.bigWig bigWig (plus strand signal of all reads) 59.8 MB
ENCFF144PVR.bigWig bigWig (plus strand signal of unique reads) 48.5 MB
ENCFF151UGT.bigWig bigWig (minus strand signal of all reads) 52.5 MB
ENCFF168CMU.bigWig bigWig (minus strand signal of unique reads) 51.7 MB
ENCFF180KPO.fastq fastq (reads) 1.8 GB
ENCFF190VJB.bigWig bigWig (plus strand signal of unique reads) 52.9 MB
ENCFF197PFH.bigWig bigWig (plus strand signal of unique reads) 47.1 MB
ENCFF200UFR.fastq fastq (reads) 1.8 GB
ENCFF202XPT.bigWig bigWig (minus strand signal of all reads) 57.4 MB
ENCFF208NQL.bigWig bigWig (plus strand signal of all reads) 48.3 MB
ENCFF221ZHP.bigWig bigWig (minus strand signal of all reads) 58.6 MB
ENCFF228TGV.tsv tsv (gene quantifications) 9.1 MB
ENCFF230PVG.bigWig bigWig (minus strand signal of all reads) 56.6 MB
ENCFF234OXY.bigWig bigWig (plus strand signal of all reads) 58.4 MB
ENCFF253OTE.tsv tsv (gene quantifications) 9.1 MB
ENCFF273TPV.bigWig bigWig (minus strand signal of unique reads) 45.8 MB
ENCFF290DGO.tsv tsv (transcript quantifications) 25.0 MB
ENCFF300MES.bigWig bigWig (minus strand signal of all reads) 49.0 MB
ENCFF312XLA.tsv tsv (transcript quantifications) 27.1 MB
ENCFF335MSL.bam bam (transcriptome alignments) 3.6 GB
ENCFF345DBO.bigWig bigWig (plus strand signal of unique reads) 51.3 MB
ENCFF352DWX.bigWig bigWig (minus strand signal of unique reads) 47.0 MB
ENCFF354UJO.bam bam (alignments) 2.9 GB
ENCFF378QOH.bam bam (alignments) 2.5 GB
ENCFF381SJP.bigWig bigWig (minus strand signal of unique reads) 51.5 MB
ENCFF388MUH.bigWig bigWig (minus strand signal of unique reads) 50.2 MB
ENCFF396YKB.bigWig bigWig (plus strand signal of all reads) 51.8 MB
ENCFF403BQA.bigWig bigWig (plus strand signal of all reads) 59.2 MB
ENCFF419OUB.tsv tsv (gene quantifications) 10.4 MB
ENCFF421ZKE.bigWig bigWig (plus strand signal of all reads) 53.8 MB
ENCFF451DRS.bam bam (transcriptome alignments) 3.1 GB
ENCFF497BIW.bigWig bigWig (plus strand signal of all reads) 50.2 MB
ENCFF510JQA.bigWig bigWig (minus strand signal of unique reads) 49.9 MB
ENCFF510YWX.bam bam (alignments) 2.9 GB
ENCFF537EVB.bigWig bigWig (minus strand signal of unique reads) 45.2 MB
ENCFF547CTR.bigWig bigWig (minus strand signal of unique reads) 42.7 MB
ENCFF562DRQ.bigWig bigWig (minus strand signal of all reads) 58.6 MB
ENCFF575VQI.tsv tsv (gene quantifications) 9.4 MB
ENCFF578CEW.bigWig bigWig (plus strand signal of unique reads) 51.5 MB
ENCFF587UFS.bigWig bigWig (minus strand signal of unique reads) 44.2 MB
ENCFF615GFM.bigWig bigWig (minus strand signal of all reads) 58.0 MB
ENCFF623ZMZ.tsv tsv (gene quantifications) 10.4 MB
ENCFF634EJM.bigWig bigWig (minus strand signal of all reads) 50.4 MB
ENCFF656OHJ.tsv tsv (transcript quantifications) 27.1 MB
ENCFF663VRG.tsv tsv (gene quantifications) 9.5 MB
ENCFF689DDA.bigWig bigWig (plus strand signal of unique reads) 53.1 MB
ENCFF689ENT.bam bam (alignments) 2.9 GB
ENCFF692NSL.bigWig bigWig (plus strand signal of all reads) 49.9 MB
ENCFF693GXR.bigWig bigWig (minus strand signal of unique reads) 50.1 MB
ENCFF707LZC.bam bam (alignments) 2.1 GB
ENCFF713NLI.fastq fastq (reads) 1.5 GB
ENCFF715WOQ.bigWig bigWig (minus strand signal of unique reads) 46.5 MB
ENCFF723WGR.bigWig bigWig (minus strand signal of all reads) 47.2 MB
ENCFF751SNF.bigWig bigWig (minus strand signal of all reads) 57.4 MB
ENCFF769HYB.tsv tsv (transcript quantifications) 25.4 MB
ENCFF776EML.bigWig bigWig (plus strand signal of unique reads) 47.8 MB
ENCFF799HIK.bam bam (alignments) 2.1 GB
ENCFF814YAD.bam bam (transcriptome alignments) 2.6 GB
ENCFF824LUB.tsv tsv (transcript quantifications) 29.9 MB
ENCFF827RHP.bigWig bigWig (plus strand signal of unique reads) 45.7 MB
ENCFF849ISX.bigWig bigWig (minus strand signal of all reads) 50.8 MB
ENCFF861QOT.bigWig bigWig (plus strand signal of unique reads) 52.1 MB
ENCFF881DGZ.bam bam (alignments) 2.4 GB
ENCFF885FZS.fastq fastq (reads) 1.5 GB
ENCFF887XJW.bam bam (transcriptome alignments) 3.2 GB
ENCFF894VDP.bam bam (alignments) 2.4 GB
ENCFF905MGP.bam bam (alignments) 2.5 GB
ENCFF911HND.bigWig bigWig (plus strand signal of all reads) 51.5 MB
ENCFF944LDU.bigWig bigWig (plus strand signal of all reads) 58.4 MB
ENCFF951DKS.bigWig bigWig (minus strand signal of all reads) 48.8 MB
ENCFF955ZMX.bigWig bigWig (plus strand signal of all reads) 57.6 MB
ENCFF965HUJ.bam bam (alignments) 2.4 GB
ENCFF969RXH.tsv tsv (transcript quantifications) 25.4 MB
ENCFF988IMK.bigWig bigWig (plus strand signal of unique reads) 44.2 MB
ENCFF988MGE.bigWig bigWig (plus strand signal of unique reads) 46.4 MB
ENCSR438XYI ENCSR · via encode_api

eCLIP control experiment on HepG2 against MATR3

Homo sapiens

8 data files
FileTypeSize
ENCFF198CUU.bigWig bigWig (minus strand signal of unique reads) 23.4 MB
ENCFF226MDW.bigWig bigWig (minus strand signal of unique reads) 22.9 MB
ENCFF296CLI.bigWig bigWig (plus strand signal of unique reads) 23.6 MB
ENCFF396MHA.fastq fastq (reads) 521.0 MB
ENCFF480VLX.fastq fastq (reads) 480.5 MB
ENCFF790VFN.bam bam (alignments) 512.9 MB
ENCFF794ILP.bam bam (alignments) 526.1 MB
ENCFF893NBT.bigWig bigWig (plus strand signal of unique reads) 22.9 MB
ENCSR497VCL ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) pulldown experiment against UNK

13 data files
FileTypeSize
ENCFF035LLB.fastq fastq (reads) 697.6 MB
ENCFF039XDI.tsv tsv (library fraction) 265.1 KB
ENCFF084FZV.fastq fastq (reads) 482.4 MB
ENCFF190SRP.tsv tsv (library fraction) 15.3 KB
ENCFF256CNE.fastq fastq (reads) 344.5 MB
ENCFF325YQY.tsv tsv (enrichment) 168.0 KB
ENCFF353YNE.tsv tsv (enrichment) 41.0 KB
ENCFF363RNZ.tsv tsv (enrichment) 10.0 KB
ENCFF380WOJ.tsv tsv (library fraction) 1.1 MB
ENCFF474ABY.fastq fastq (reads) 453.8 MB
ENCFF475EIU.tsv tsv (library fraction) 64.1 KB
ENCFF711ESU.tsv tsv (enrichment) 688.0 KB
ENCFF874MPY.fastq fastq (reads) 510.9 MB
ENCSR389HFU ENCSR · via encode_api

RNA-seq on HepG2 cells treated with an shRNA knockdown against FTO. (FTO_BGHLV35)

Homo sapiens

92 data files
FileTypeSize
ENCFF011RGL.bigWig bigWig (plus strand signal of all reads) 67.9 MB
ENCFF033QTA.bigWig bigWig (plus strand signal of all reads) 63.2 MB
ENCFF040UVP.bigWig bigWig (plus strand signal of unique reads) 49.0 MB
ENCFF052XTR.bigWig bigWig (plus strand signal of unique reads) 56.8 MB
ENCFF056EDX.bigWig bigWig (plus strand signal of all reads) 69.3 MB
ENCFF060AOI.bigWig bigWig (plus strand signal of unique reads) 56.7 MB
ENCFF068DWZ.bigWig bigWig (minus strand signal of unique reads) 60.1 MB
ENCFF083YPE.bigWig bigWig (plus strand signal of unique reads) 56.8 MB
ENCFF090DAE.bigWig bigWig (minus strand signal of unique reads) 51.3 MB
ENCFF098ONQ.bam bam (alignments) 5.2 GB
ENCFF099AGZ.bigWig bigWig (minus strand signal of all reads) 52.4 MB
ENCFF124DKU.tsv tsv (differential expression quantifications) 2.0 MB
ENCFF127UCT.bigWig bigWig (plus strand signal of all reads) 59.2 MB
ENCFF138NYD.tsv tsv (gene quantifications) 10.4 MB
ENCFF147IHY.bigWig bigWig (plus strand signal of all reads) 53.6 MB
ENCFF152ATR.bigWig bigWig (plus strand signal of all reads) 69.2 MB
ENCFF152BTN.tsv tsv (transcript quantifications) 27.3 MB
ENCFF176JZH.bam bam (transcriptome alignments) 5.9 GB
ENCFF209ZHJ.tsv tsv (transcript quantifications) 25.0 MB
ENCFF226KBV.tsv tsv (transcript quantifications) 25.4 MB
ENCFF232MMZ.bigWig bigWig (minus strand signal of unique reads) 51.1 MB
ENCFF251GFZ.bam bam (transcriptome alignments) 6.3 GB
ENCFF298YIE.tsv tsv (gene quantifications) 10.4 MB
ENCFF301SKI.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF309BZV.tsv tsv (differential expression quantifications) 5.5 MB
ENCFF309YKH.bam bam (alignments) 4.4 GB
ENCFF313AIU.tsv tsv (transcript quantifications) 27.2 MB
ENCFF318JRJ.bigWig bigWig (plus strand signal of unique reads) 61.8 MB
ENCFF339OMG.bam bam (alignments) 4.7 GB
ENCFF391USK.bigWig bigWig (plus strand signal of unique reads) 62.1 MB
ENCFF393ITA.bigWig bigWig (minus strand signal of unique reads) 55.4 MB
ENCFF402DXI.bigWig bigWig (minus strand signal of all reads) 62.2 MB
ENCFF408FIB.bam bam (alignments) 5.6 GB
ENCFF424XXZ.bam bam (alignments) 4.7 GB
ENCFF431UCT.bam bam (transcriptome alignments) 7.1 GB
ENCFF456VHJ.bigWig bigWig (minus strand signal of unique reads) 55.4 MB
ENCFF460YJY.bam bam (alignments) 5.7 GB
ENCFF464TJX.bigWig bigWig (plus strand signal of unique reads) 57.0 MB
ENCFF468QEI.bigWig bigWig (plus strand signal of all reads) 61.1 MB
ENCFF509SZZ.fastq fastq (reads) 3.0 GB
ENCFF525YQY.bigWig bigWig (minus strand signal of all reads) 66.8 MB
ENCFF527BXM.tsv tsv (gene quantifications) 9.1 MB
ENCFF538OZF.bigWig bigWig (plus strand signal of unique reads) 52.4 MB
ENCFF554ELV.bigWig bigWig (minus strand signal of all reads) 54.6 MB
ENCFF574GYE.tsv tsv (transcript quantifications) 29.9 MB
ENCFF605EOA.tsv tsv (gene quantifications) 9.5 MB
ENCFF606DRO.bigWig bigWig (minus strand signal of all reads) 59.8 MB
ENCFF613QNX.bigWig bigWig (minus strand signal of unique reads) 54.9 MB
ENCFF618PNX.tsv tsv (transcript quantifications) 29.9 MB
ENCFF622UIJ.bigWig bigWig (minus strand signal of all reads) 58.1 MB
ENCFF622ZUI.tsv tsv (gene quantifications) 9.5 MB
ENCFF623FEY.bam bam (alignments) 4.7 GB
ENCFF636LGY.bigWig bigWig (minus strand signal of unique reads) 47.7 MB
ENCFF646VAJ.bigWig bigWig (plus strand signal of unique reads) 53.3 MB
ENCFF647WIO.bigWig bigWig (minus strand signal of all reads) 68.0 MB
ENCFF656KXK.bigWig bigWig (minus strand signal of all reads) 62.2 MB
ENCFF674AGE.tsv tsv (differential expression quantifications) 4.3 MB
ENCFF675BHO.bigWig bigWig (plus strand signal of all reads) 57.6 MB
ENCFF678ZHA.fastq fastq (reads) 3.0 GB
ENCFF679VSM.bigWig bigWig (minus strand signal of unique reads) 60.4 MB
ENCFF680QTI.bam bam (alignments) 4.4 GB
ENCFF683LRR.bigWig bigWig (plus strand signal of unique reads) 56.3 MB
ENCFF685VOM.tar tar (differential splicing quantifications) 2.7 MB
ENCFF688JHX.bigWig bigWig (minus strand signal of unique reads) 55.2 MB
ENCFF713ZXM.tar tar (differential splicing quantifications) 13.1 MB
ENCFF717MWA.bigWig bigWig (minus strand signal of all reads) 55.5 MB
ENCFF718WUN.tsv tsv (transcript quantifications) 25.4 MB
ENCFF720ZHG.bigWig bigWig (minus strand signal of unique reads) 55.4 MB
ENCFF728EBF.bam bam (alignments) 5.7 GB
ENCFF733HEW.bigWig bigWig (minus strand signal of unique reads) 51.7 MB
ENCFF745HJT.bam bam (transcriptome alignments) 6.3 GB
ENCFF792AUU.bam bam (alignments) 5.3 GB
ENCFF815LON.bigWig bigWig (minus strand signal of all reads) 68.0 MB
ENCFF827UKA.fastq fastq (reads) 3.3 GB
ENCFF832WIT.bigWig bigWig (minus strand signal of all reads) 56.3 MB
ENCFF835FPY.bigWig bigWig (plus strand signal of all reads) 55.5 MB
ENCFF850WGG.bam bam (alignments) 5.3 GB
ENCFF854YKN.tsv tsv (differential expression quantifications) 1.8 MB
ENCFF865XAW.bigWig bigWig (plus strand signal of all reads) 62.5 MB
ENCFF877IQT.bam bam (transcriptome alignments) 6.6 GB
ENCFF883AWZ.tsv tsv (transcript quantifications) 25.0 MB
ENCFF897XDG.tsv tsv (gene quantifications) 9.1 MB
ENCFF908XPV.bigWig bigWig (minus strand signal of unique reads) 60.3 MB
ENCFF914GQV.bigWig bigWig (minus strand signal of all reads) 61.5 MB
ENCFF924KMY.bigWig bigWig (plus strand signal of unique reads) 62.1 MB
ENCFF931KRG.fastq fastq (reads) 3.3 GB
ENCFF957MMJ.bigWig bigWig (plus strand signal of all reads) 56.7 MB
ENCFF962XRE.bam bam (alignments) 4.4 GB
ENCFF974OBB.bigWig bigWig (plus strand signal of unique reads) 52.7 MB
ENCFF980PCZ.bigWig bigWig (plus strand signal of all reads) 63.1 MB
ENCFF996VWB.bam bam (transcriptome alignments) 5.9 GB
ENCFF998XWM.tar tar (differential splicing quantifications) 3.5 MB
ENCSR583NVI ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) pulldown experiment against KHDRBS3

12 data files
FileTypeSize
ENCFF118MEC.fastq fastq (reads) 555.6 MB
ENCFF130WFJ.tsv tsv (library fraction) 12.4 KB
ENCFF223NMR.tsv tsv (library fraction) 52.5 KB
ENCFF324JGS.tsv tsv (enrichment) 140.0 KB
ENCFF378CHX.tsv tsv (enrichment) 34.0 KB
ENCFF612DYP.fastq fastq (reads) 1.3 GB
ENCFF667QWI.tsv tsv (library fraction) 888.7 KB
ENCFF668MVP.tsv tsv (enrichment) 8.3 KB
ENCFF709CRG.tsv tsv (enrichment) 576.0 KB
ENCFF793XRU.fastq fastq (reads) 558.8 MB
ENCFF905COP.tsv tsv (library fraction) 217.8 KB
ENCFF993IHW.fastq fastq (reads) 378.4 MB
ENCSR278BSO ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) input control experiment of NUPL2 and PRR3

1 data file
FileTypeSize
ENCFF137VIC.fastq fastq (reads) 312.7 MB
ENCSR335RUM ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) input control experiment of KHDRBS3 and SNRPA

1 data file
FileTypeSize
ENCFF385FEF.fastq fastq (reads) 352.9 MB
ENCSR513UTE ENCSR · via encode_api

eCLIP control experiment on HepG2 against HNRNPL

Homo sapiens

8 data files
FileTypeSize
ENCFF139YRQ.bam bam (alignments) 679.6 MB
ENCFF255EGS.bam bam (alignments) 691.3 MB
ENCFF375ZHC.fastq fastq (reads) 796.9 MB
ENCFF530ZIY.bigWig bigWig (minus strand signal of unique reads) 31.0 MB
ENCFF676LYW.fastq fastq (reads) 723.6 MB
ENCFF751YCQ.bigWig bigWig (plus strand signal of unique reads) 31.1 MB
ENCFF843CKP.bigWig bigWig (minus strand signal of unique reads) 30.2 MB
ENCFF909QTN.bigWig bigWig (plus strand signal of unique reads) 31.5 MB
ENCSR321GBR ENCSR · via encode_api

eCLIP control experiment on K562 against ZC3H11A

Homo sapiens

8 data files
FileTypeSize
ENCFF177WFE.bigWig bigWig (minus strand signal of unique reads) 21.2 MB
ENCFF227WPB.bigWig bigWig (plus strand signal of unique reads) 21.9 MB
ENCFF394SQZ.fastq fastq (reads) 721.0 MB
ENCFF489FQK.bigWig bigWig (minus strand signal of unique reads) 21.6 MB
ENCFF610DOP.bam bam (alignments) 493.8 MB
ENCFF713XZZ.bam bam (alignments) 481.3 MB
ENCFF721JZR.fastq fastq (reads) 703.2 MB
ENCFF958DFY.bigWig bigWig (plus strand signal of unique reads) 22.4 MB
ENCSR691IVR ENCSR · via encode_api

Control shRNA against no target in HepG2 cells followed by RNA-seq. (NT_BGHLV33)

Homo sapiens

84 data files
FileTypeSize
ENCFF008FEU.bigWig bigWig (plus strand signal of unique reads) 84.2 MB
ENCFF010VKI.tsv tsv (gene quantifications) 9.5 MB
ENCFF014UZK.bam bam (transcriptome alignments) 7.5 GB
ENCFF062EWB.bigWig bigWig (minus strand signal of unique reads) 81.7 MB
ENCFF063BNK.bigWig bigWig (minus strand signal of all reads) 87.9 MB
ENCFF071WAA.bigWig bigWig (plus strand signal of all reads) 89.9 MB
ENCFF072ZOG.tsv tsv (gene quantifications) 9.1 MB
ENCFF080QMG.bigWig bigWig (plus strand signal of unique reads) 83.0 MB
ENCFF081XOF.bigWig bigWig (plus strand signal of all reads) 100.1 MB
ENCFF082EWQ.bam bam (transcriptome alignments) 7.6 GB
ENCFF092DBU.bam bam (alignments) 5.4 GB
ENCFF097FDK.tsv tsv (transcript quantifications) 24.9 MB
ENCFF115BQI.bam bam (alignments) 5.3 GB
ENCFF118QFF.tsv tsv (gene quantifications) 9.5 MB
ENCFF129UNG.bigWig bigWig (plus strand signal of all reads) 87.7 MB
ENCFF163XOT.tsv tsv (transcript quantifications) 25.3 MB
ENCFF168UDP.bam bam (alignments) 6.3 GB
ENCFF198GDD.bigWig bigWig (minus strand signal of all reads) 89.5 MB
ENCFF208MEA.bigWig bigWig (minus strand signal of unique reads) 90.5 MB
ENCFF228HZD.bigWig bigWig (plus strand signal of all reads) 91.5 MB
ENCFF236JDA.bigWig bigWig (minus strand signal of all reads) 102.2 MB
ENCFF244JIO.bigWig bigWig (minus strand signal of unique reads) 86.3 MB
ENCFF248RMM.fastq fastq (reads) 3.6 GB
ENCFF248XPB.bigWig bigWig (minus strand signal of all reads) 89.7 MB
ENCFF250AUG.bigWig bigWig (plus strand signal of unique reads) 89.0 MB
ENCFF251BFQ.bigWig bigWig (minus strand signal of all reads) 98.2 MB
ENCFF258VUW.fastq fastq (reads) 3.5 GB
ENCFF260RLO.tsv tsv (transcript quantifications) 25.3 MB
ENCFF279WLO.bam bam (alignments) 6.5 GB
ENCFF289VKL.bigWig bigWig (plus strand signal of unique reads) 93.2 MB
ENCFF307DXG.bigWig bigWig (plus strand signal of unique reads) 85.8 MB
ENCFF312VYJ.bigWig bigWig (plus strand signal of all reads) 86.4 MB
ENCFF314LUS.bam bam (alignments) 5.2 GB
ENCFF321ZFN.bam bam (alignments) 6.2 GB
ENCFF323SGY.bam bam (alignments) 6.6 GB
ENCFF345UKQ.bigWig bigWig (plus strand signal of all reads) 104.3 MB
ENCFF349QHG.fastq fastq (reads) 3.6 GB
ENCFF378EXF.bigWig bigWig (plus strand signal of all reads) 91.5 MB
ENCFF382EUK.bam bam (transcriptome alignments) 8.6 GB
ENCFF394SZD.bigWig bigWig (plus strand signal of unique reads) 90.6 MB
ENCFF407UBO.bam bam (alignments) 5.4 GB
ENCFF435DBW.bigWig bigWig (plus strand signal of unique reads) 83.3 MB
ENCFF458MHL.tsv tsv (transcript quantifications) 27.4 MB
ENCFF472JUO.bam bam (alignments) 5.3 GB
ENCFF486MVJ.bigWig bigWig (plus strand signal of all reads) 100.1 MB
ENCFF508JQW.bigWig bigWig (minus strand signal of unique reads) 90.4 MB
ENCFF510QAC.tsv tsv (transcript quantifications) 24.9 MB
ENCFF522CQG.tsv tsv (gene quantifications) 10.4 MB
ENCFF524JXM.tsv tsv (transcript quantifications) 29.8 MB
ENCFF537NNK.bam bam (transcriptome alignments) 8.5 GB
ENCFF542STE.bam bam (transcriptome alignments) 7.6 GB
ENCFF573ATS.tsv tsv (gene quantifications) 9.1 MB
ENCFF580WKK.bigWig bigWig (minus strand signal of unique reads) 83.4 MB
ENCFF586GOL.tsv tsv (transcript quantifications) 29.8 MB
ENCFF605VCY.bigWig bigWig (plus strand signal of all reads) 98.5 MB
ENCFF642AGS.bigWig bigWig (minus strand signal of unique reads) 88.0 MB
ENCFF655OCU.bigWig bigWig (minus strand signal of all reads) 84.5 MB
ENCFF657QTK.bigWig bigWig (plus strand signal of all reads) 102.5 MB
ENCFF665ZDM.bigWig bigWig (minus strand signal of unique reads) 80.6 MB
ENCFF675XAF.bigWig bigWig (minus strand signal of unique reads) 91.0 MB
ENCFF678DFI.bam bam (alignments) 6.5 GB
ENCFF692UUQ.bigWig bigWig (minus strand signal of all reads) 87.3 MB
ENCFF715AGI.bam bam (alignments) 5.2 GB
ENCFF718TZD.tsv tsv (transcript quantifications) 27.4 MB
ENCFF740TTB.bigWig bigWig (plus strand signal of unique reads) 93.7 MB
ENCFF742KNR.bigWig bigWig (plus strand signal of unique reads) 90.6 MB
ENCFF743TMF.bigWig bigWig (minus strand signal of all reads) 100.7 MB
ENCFF770RSF.bigWig bigWig (minus strand signal of unique reads) 78.0 MB
ENCFF771DDK.bigWig bigWig (plus strand signal of all reads) 89.3 MB
ENCFF802DJX.bigWig bigWig (minus strand signal of unique reads) 84.3 MB
ENCFF809YJF.bam bam (transcriptome alignments) 7.6 GB
ENCFF827KIW.tsv tsv (gene quantifications) 10.4 MB
ENCFF833KYW.bigWig bigWig (minus strand signal of all reads) 102.2 MB
ENCFF840ZPM.bigWig bigWig (plus strand signal of unique reads) 86.9 MB
ENCFF855ODF.bigWig bigWig (minus strand signal of all reads) 96.8 MB
ENCFF902CWR.bigWig bigWig (plus strand signal of unique reads) 93.1 MB
ENCFF918VZC.bigWig bigWig (minus strand signal of unique reads) 87.9 MB
ENCFF928FXN.bam bam (alignments) 6.6 GB
ENCFF947QZH.fastq fastq (reads) 3.5 GB
ENCFF952WJN.bigWig bigWig (minus strand signal of all reads) 85.9 MB
ENCFF969DDU.bigWig bigWig (plus strand signal of unique reads) 80.6 MB
ENCFF980MRO.bigWig bigWig (minus strand signal of unique reads) 80.7 MB
ENCFF997CYD.bigWig bigWig (plus strand signal of all reads) 104.3 MB
ENCFF998BMA.bigWig bigWig (minus strand signal of all reads) 98.1 MB
ENCSR418ZPZ ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) input control experiment of SRSF11

1 data file
FileTypeSize
ENCFF248EWX.fastq fastq (reads) 492.0 MB
ENCSR411IMJ ENCSR · via encode_api

eCLIP control experiment on K562 against FXR2

Homo sapiens

8 data files
FileTypeSize
ENCFF161OXR.bam bam (alignments) 198.7 MB
ENCFF277PAA.fastq fastq (reads) 338.1 MB
ENCFF331TPL.bigWig bigWig (minus strand signal of unique reads) 11.8 MB
ENCFF410ICZ.bigWig bigWig (minus strand signal of unique reads) 11.9 MB
ENCFF497DMS.bam bam (alignments) 199.8 MB
ENCFF508IIT.fastq fastq (reads) 323.7 MB
ENCFF702MEX.bigWig bigWig (plus strand signal of unique reads) 12.3 MB
ENCFF717CBD.bigWig bigWig (plus strand signal of unique reads) 12.4 MB
ENCSR869TOB ENCSR · via encode_api

eCLIP control experiment on K562 against PUS1

Homo sapiens

8 data files
FileTypeSize
ENCFF283DWL.bam bam (alignments) 370.0 MB
ENCFF292NQE.bam bam (alignments) 374.9 MB
ENCFF339KXC.fastq fastq (reads) 694.2 MB
ENCFF428CCS.bigWig bigWig (minus strand signal of unique reads) 17.2 MB
ENCFF497CCO.bigWig bigWig (plus strand signal of unique reads) 17.9 MB
ENCFF555JVP.bigWig bigWig (minus strand signal of unique reads) 17.5 MB
ENCFF586BVD.fastq fastq (reads) 665.5 MB
ENCFF683XOT.bigWig bigWig (plus strand signal of unique reads) 18.2 MB
ENCSR950WBG ENCSR · via encode_api

eCLIP control experiment on K562 against SLBP

Homo sapiens

8 data files
FileTypeSize
ENCFF176IOE.bigWig bigWig (minus strand signal of unique reads) 5.5 MB
ENCFF296EON.fastq fastq (reads) 390.1 MB
ENCFF494AAJ.fastq fastq (reads) 403.8 MB
ENCFF666UVV.bigWig bigWig (minus strand signal of unique reads) 5.4 MB
ENCFF836ZSE.bigWig bigWig (plus strand signal of unique reads) 5.6 MB
ENCFF879UID.bam bam (alignments) 107.0 MB
ENCFF913HKF.bam bam (alignments) 105.9 MB
ENCFF986NDL.bigWig bigWig (plus strand signal of unique reads) 5.7 MB
ENCSR096WVE ENCSR · via encode_api

RNA-seq on K562 cells treated with a CRISPR gRNA against EIF3H. (EIF3H_BGKcLV04)

Homo sapiens

92 data files
FileTypeSize
ENCFF002PWN.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF004GYN.bigWig bigWig (plus strand signal of unique reads) 78.0 MB
ENCFF012DRN.bigWig bigWig (plus strand signal of all reads) 107.3 MB
ENCFF020UEN.bigWig bigWig (plus strand signal of unique reads) 97.6 MB
ENCFF022ODS.bigWig bigWig (minus strand signal of all reads) 87.1 MB
ENCFF027SQH.bam bam (alignments) 3.7 GB
ENCFF032EMZ.bam bam (alignments) 4.7 GB
ENCFF043CWG.fastq fastq (reads) 1.8 GB
ENCFF060PJQ.fastq fastq (reads) 1.8 GB
ENCFF072LFJ.tsv tsv (transcript quantifications) 29.8 MB
ENCFF090QSH.bigWig bigWig (plus strand signal of unique reads) 90.8 MB
ENCFF096EMU.bigWig bigWig (minus strand signal of all reads) 87.1 MB
ENCFF115YLS.bigWig bigWig (plus strand signal of unique reads) 96.6 MB
ENCFF131ZKI.bam bam (alignments) 5.0 GB
ENCFF142EQC.bam bam (alignments) 5.0 GB
ENCFF160XNY.bigWig bigWig (minus strand signal of unique reads) 94.0 MB
ENCFF163MQV.bigWig bigWig (minus strand signal of all reads) 76.7 MB
ENCFF179ZFD.bam bam (alignments) 4.0 GB
ENCFF188GZW.bigWig bigWig (minus strand signal of unique reads) 88.3 MB
ENCFF201WUU.bigWig bigWig (plus strand signal of all reads) 108.7 MB
ENCFF228NLS.bam bam (transcriptome alignments) 5.4 GB
ENCFF231HNF.bam bam (alignments) 2.8 GB
ENCFF253RCB.tsv tsv (transcript quantifications) 29.8 MB
ENCFF259RGH.bigWig bigWig (minus strand signal of all reads) 107.0 MB
ENCFF278VJD.bigWig bigWig (plus strand signal of all reads) 88.5 MB
ENCFF301TNC.bam bam (transcriptome alignments) 4.3 GB
ENCFF315XKU.bigWig bigWig (minus strand signal of all reads) 95.4 MB
ENCFF316LMY.tsv tsv (gene quantifications) 9.4 MB
ENCFF330UTR.bigWig bigWig (minus strand signal of all reads) 96.9 MB
ENCFF334ZXC.bigWig bigWig (plus strand signal of unique reads) 69.7 MB
ENCFF340PNX.bigWig bigWig (minus strand signal of unique reads) 77.1 MB
ENCFF366FBG.bigWig bigWig (plus strand signal of unique reads) 74.5 MB
ENCFF369TNQ.bam bam (transcriptome alignments) 6.2 GB
ENCFF377IVR.tsv tsv (transcript quantifications) 24.9 MB
ENCFF399TTT.tsv tsv (transcript quantifications) 27.4 MB
ENCFF400AAE.tsv tsv (gene quantifications) 9.5 MB
ENCFF410KOP.tsv tsv (differential expression quantifications) 4.3 MB
ENCFF411KUY.bam bam (transcriptome alignments) 3.7 GB
ENCFF423PMO.bigWig bigWig (plus strand signal of all reads) 108.7 MB
ENCFF436KRH.bam bam (alignments) 3.9 GB
ENCFF440YCL.bigWig bigWig (plus strand signal of all reads) 88.5 MB
ENCFF462TKQ.bigWig bigWig (minus strand signal of unique reads) 67.6 MB
ENCFF467GZJ.tsv tsv (transcript quantifications) 27.4 MB
ENCFF476MVN.bigWig bigWig (plus strand signal of all reads) 80.7 MB
ENCFF482NOG.bigWig bigWig (plus strand signal of unique reads) 79.2 MB
ENCFF491ECE.bigWig bigWig (plus strand signal of all reads) 78.0 MB
ENCFF492WGU.tar tar (differential splicing quantifications) 4.0 MB
ENCFF500PUK.bigWig bigWig (plus strand signal of all reads) 87.5 MB
ENCFF502PJE.bigWig bigWig (plus strand signal of unique reads) 97.6 MB
ENCFF507JUO.bigWig bigWig (minus strand signal of unique reads) 71.6 MB
ENCFF512GFF.bam bam (alignments) 3.7 GB
ENCFF528DCH.bigWig bigWig (plus strand signal of unique reads) 73.3 MB
ENCFF539XYF.bigWig bigWig (plus strand signal of unique reads) 87.6 MB
ENCFF541YSY.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF545WPJ.bigWig bigWig (minus strand signal of unique reads) 72.5 MB
ENCFF550LON.bigWig bigWig (plus strand signal of unique reads) 91.0 MB
ENCFF562TQY.tar tar (differential splicing quantifications) 5.5 MB
ENCFF588BSL.bigWig bigWig (plus strand signal of unique reads) 79.2 MB
ENCFF605IIS.bigWig bigWig (minus strand signal of unique reads) 77.3 MB
ENCFF613TYZ.bigWig bigWig (plus strand signal of all reads) 74.6 MB
ENCFF620ZTJ.bigWig bigWig (minus strand signal of unique reads) 85.0 MB
ENCFF653TEO.tsv tsv (gene quantifications) 9.1 MB
ENCFF655OKK.bigWig bigWig (minus strand signal of unique reads) 95.2 MB
ENCFF661XSV.bam bam (alignments) 2.9 GB
ENCFF662JUN.bigWig bigWig (plus strand signal of all reads) 97.0 MB
ENCFF676UWR.bigWig bigWig (minus strand signal of all reads) 105.5 MB
ENCFF687IEH.bigWig bigWig (minus strand signal of unique reads) 76.1 MB
ENCFF710RXF.bigWig bigWig (plus strand signal of all reads) 99.0 MB
ENCFF738CFC.bam bam (alignments) 3.9 GB
ENCFF739ETZ.bigWig bigWig (minus strand signal of all reads) 86.0 MB
ENCFF760ODH.tsv tsv (differential expression quantifications) 2.0 MB
ENCFF767EUC.tsv tsv (gene quantifications) 10.4 MB
ENCFF782PGS.bigWig bigWig (minus strand signal of all reads) 72.9 MB
ENCFF797YLG.bigWig bigWig (plus strand signal of all reads) 94.7 MB
ENCFF803JSV.bigWig bigWig (minus strand signal of all reads) 107.0 MB
ENCFF807YCT.fastq fastq (reads) 2.6 GB
ENCFF823HCY.bam bam (transcriptome alignments) 3.8 GB
ENCFF835DJZ.bigWig bigWig (minus strand signal of all reads) 79.0 MB
ENCFF852UMT.bam bam (alignments) 2.8 GB
ENCFF860UJG.tsv tsv (transcript quantifications) 25.3 MB
ENCFF873MTF.tar tar (differential splicing quantifications) 15.7 MB
ENCFF880NMM.bigWig bigWig (minus strand signal of unique reads) 95.2 MB
ENCFF884UVK.tsv tsv (gene quantifications) 10.4 MB
ENCFF900MDD.tsv tsv (transcript quantifications) 25.3 MB
ENCFF900POP.tsv tsv (transcript quantifications) 24.9 MB
ENCFF908IFW.tsv tsv (differential expression quantifications) 2.8 MB
ENCFF926BTF.bam bam (transcriptome alignments) 5.4 GB
ENCFF948LWL.tsv tsv (gene quantifications) 9.1 MB
ENCFF951GAY.fastq fastq (reads) 2.6 GB
ENCFF953CXO.bigWig bigWig (minus strand signal of all reads) 92.4 MB
ENCFF954ISA.bam bam (alignments) 3.4 GB
ENCFF990KKP.bigWig bigWig (minus strand signal of unique reads) 88.8 MB
ENCSR751CSY ENCSR · via encode_api

eCLIP control experiment on K562 against UCHL5

Homo sapiens

8 data files
FileTypeSize
ENCFF156RQC.bigWig bigWig (minus strand signal of unique reads) 34.8 MB
ENCFF156WVL.bam bam (alignments) 769.2 MB
ENCFF434XME.fastq fastq (reads) 977.5 MB
ENCFF544QCC.bigWig bigWig (plus strand signal of unique reads) 36.8 MB
ENCFF545RPT.fastq fastq (reads) 874.5 MB
ENCFF620KOF.bigWig bigWig (minus strand signal of unique reads) 35.5 MB
ENCFF886HUH.bam bam (alignments) 758.2 MB
ENCFF980ZKW.bigWig bigWig (plus strand signal of unique reads) 36.1 MB
ENCSR856CJK ENCSR · via encode_api

RNA-seq on K562 cells treated with an shRNA knockdown against DDX55. (DDX55_BGKLV21)

Homo sapiens

92 data files
FileTypeSize
ENCFF007RHB.tsv tsv (gene quantifications) 9.1 MB
ENCFF015BLQ.bigWig bigWig (minus strand signal of all reads) 66.0 MB
ENCFF018NFS.bigWig bigWig (minus strand signal of all reads) 65.9 MB
ENCFF028HQJ.bigWig bigWig (plus strand signal of unique reads) 52.3 MB
ENCFF041KIC.bigWig bigWig (minus strand signal of all reads) 64.7 MB
ENCFF045OSY.bigWig bigWig (minus strand signal of all reads) 72.5 MB
ENCFF046UUL.bam bam (alignments) 3.4 GB
ENCFF049NVZ.tar tar (differential splicing quantifications) 3.0 MB
ENCFF059ZEV.tar tar (differential splicing quantifications) 3.5 MB
ENCFF064NIM.bigWig bigWig (plus strand signal of all reads) 65.7 MB
ENCFF084XHU.fastq fastq (reads) 2.1 GB
ENCFF087TZX.bigWig bigWig (minus strand signal of all reads) 61.9 MB
ENCFF109SXS.bam bam (alignments) 4.0 GB
ENCFF121YTF.bam bam (alignments) 3.0 GB
ENCFF147FOE.fastq fastq (reads) 1.6 GB
ENCFF155ELR.bigWig bigWig (minus strand signal of all reads) 58.0 MB
ENCFF161QNH.bigWig bigWig (minus strand signal of unique reads) 57.3 MB
ENCFF169VOR.bigWig bigWig (plus strand signal of unique reads) 58.3 MB
ENCFF177HXI.bigWig bigWig (plus strand signal of all reads) 63.2 MB
ENCFF186OHH.bam bam (alignments) 2.5 GB
ENCFF187YUF.bam bam (transcriptome alignments) 3.7 GB
ENCFF196YWX.bigWig bigWig (minus strand signal of all reads) 54.9 MB
ENCFF199YUW.bigWig bigWig (minus strand signal of unique reads) 53.1 MB
ENCFF200XVP.bigWig bigWig (minus strand signal of unique reads) 59.0 MB
ENCFF204NNR.fastq fastq (reads) 1.5 GB
ENCFF236DGE.bigWig bigWig (minus strand signal of all reads) 66.1 MB
ENCFF237COJ.bigWig bigWig (minus strand signal of all reads) 73.5 MB
ENCFF237KRJ.bam bam (alignments) 3.0 GB
ENCFF243EMJ.bam bam (transcriptome alignments) 3.3 GB
ENCFF273HOF.tsv tsv (transcript quantifications) 27.2 MB
ENCFF282LGY.bigWig bigWig (plus strand signal of unique reads) 65.9 MB
ENCFF307CGL.bigWig bigWig (minus strand signal of unique reads) 57.0 MB
ENCFF309LFZ.bam bam (alignments) 3.4 GB
ENCFF346CUP.bigWig bigWig (plus strand signal of unique reads) 55.0 MB
ENCFF353DYI.bigWig bigWig (minus strand signal of unique reads) 60.2 MB
ENCFF355BLK.tsv tsv (gene quantifications) 9.4 MB
ENCFF365XVV.bigWig bigWig (plus strand signal of all reads) 74.6 MB
ENCFF381ZXJ.bigWig bigWig (minus strand signal of unique reads) 64.6 MB
ENCFF383IBQ.bigWig bigWig (minus strand signal of unique reads) 56.8 MB
ENCFF395AVM.bigWig bigWig (plus strand signal of all reads) 74.6 MB
ENCFF404NTL.bigWig bigWig (minus strand signal of all reads) 59.1 MB
ENCFF407ILQ.tar tar (differential splicing quantifications) 14.1 MB
ENCFF450DRZ.bam bam (alignments) 2.5 GB
ENCFF467WFI.bigWig bigWig (plus strand signal of all reads) 56.0 MB
ENCFF491TIS.tsv tsv (gene quantifications) 10.4 MB
ENCFF494BOH.bigWig bigWig (minus strand signal of all reads) 73.5 MB
ENCFF495CCR.tsv tsv (differential expression quantifications) 5.5 MB
ENCFF517AZA.tsv tsv (gene quantifications) 10.4 MB
ENCFF522SQL.bam bam (alignments) 4.0 GB
ENCFF551UJF.bam bam (alignments) 4.0 GB
ENCFF552BFW.bam bam (transcriptome alignments) 3.3 GB
ENCFF592OIV.tsv tsv (transcript quantifications) 29.9 MB
ENCFF615YTZ.bigWig bigWig (minus strand signal of all reads) 66.0 MB
ENCFF624GWY.tsv tsv (gene quantifications) 9.1 MB
ENCFF641PIG.tsv tsv (transcript quantifications) 27.3 MB
ENCFF664LAO.bam bam (transcriptome alignments) 5.2 GB
ENCFF668GHB.bigWig bigWig (plus strand signal of unique reads) 66.4 MB
ENCFF712QLB.tsv tsv (transcript quantifications) 25.3 MB
ENCFF713TIK.bigWig bigWig (plus strand signal of all reads) 73.5 MB
ENCFF717IBC.tsv tsv (differential expression quantifications) 2.8 MB
ENCFF719PFJ.bigWig bigWig (plus strand signal of all reads) 67.0 MB
ENCFF720WVE.bigWig bigWig (plus strand signal of unique reads) 59.0 MB
ENCFF721AAG.bigWig bigWig (plus strand signal of unique reads) 65.5 MB
ENCFF729CCS.bigWig bigWig (minus strand signal of unique reads) 63.9 MB
ENCFF731XTO.bigWig bigWig (minus strand signal of unique reads) 64.3 MB
ENCFF737BKP.bigWig bigWig (plus strand signal of all reads) 59.2 MB
ENCFF749FQZ.bigWig bigWig (plus strand signal of all reads) 67.3 MB
ENCFF750SVT.tsv tsv (transcript quantifications) 25.4 MB
ENCFF754WCO.bigWig bigWig (plus strand signal of unique reads) 59.0 MB
ENCFF781JVD.bigWig bigWig (plus strand signal of unique reads) 54.7 MB
ENCFF783MSR.bigWig bigWig (plus strand signal of unique reads) 60.3 MB
ENCFF791YCW.bam bam (transcriptome alignments) 4.6 GB
ENCFF796SSJ.bigWig bigWig (plus strand signal of unique reads) 61.9 MB
ENCFF804CRR.bam bam (alignments) 3.4 GB
ENCFF805USK.bigWig bigWig (plus strand signal of all reads) 66.9 MB
ENCFF812JBO.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF838VSD.tsv tsv (transcript quantifications) 24.9 MB
ENCFF853TDP.bigWig bigWig (plus strand signal of unique reads) 58.7 MB
ENCFF862ZQB.bigWig bigWig (minus strand signal of unique reads) 57.5 MB
ENCFF872MZO.bam bam (alignments) 2.9 GB
ENCFF899HLS.bam bam (transcriptome alignments) 4.6 GB
ENCFF917XGN.bigWig bigWig (plus strand signal of all reads) 60.0 MB
ENCFF919TCX.tsv tsv (differential expression quantifications) 1.8 MB
ENCFF929SZO.tsv tsv (differential expression quantifications) 4.1 MB
ENCFF935GXV.tsv tsv (transcript quantifications) 29.8 MB
ENCFF938WEQ.bigWig bigWig (minus strand signal of unique reads) 50.7 MB
ENCFF954VEV.tsv tsv (transcript quantifications) 24.9 MB
ENCFF954VVK.bam bam (alignments) 2.5 GB
ENCFF959SOA.bigWig bigWig (plus strand signal of all reads) 67.0 MB
ENCFF991ERC.fastq fastq (reads) 2.3 GB
ENCFF993XHV.bigWig bigWig (minus strand signal of unique reads) 53.7 MB
ENCFF997MRI.tsv tsv (gene quantifications) 9.5 MB
ENCSR169QQW ENCSR · via encode_api

RNA-seq on K562 cells treated with an shRNA knockdown against MSI2. (MSI2_BGKLV25)

Homo sapiens

92 data files
FileTypeSize
ENCFF012YON.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.7 MB
ENCFF016GHV.bam bam (alignments); assembly: hg19; genome annotation: V19 7.4 GB
ENCFF017TLV.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 145.9 MB
ENCFF027DVT.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.0 MB
ENCFF028NYP.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.6 MB
ENCFF029KKT.bam bam (alignments); assembly: GRCh38; genome annotation: V24 11.9 GB
ENCFF029XLP.fastq fastq (reads) 6.2 GB
ENCFF042DAS.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 119.0 MB
ENCFF045YUA.bam bam (alignments); assembly: hg19; genome annotation: V19 9.6 GB
ENCFF050RMR.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.5 MB
ENCFF054BSP.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 117.1 MB
ENCFF056HVR.bam bam (alignments); assembly: GRCh38; genome annotation: V29 11.9 GB
ENCFF057UOC.fastq fastq (reads) 6.1 GB
ENCFF061NWZ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 132.2 MB
ENCFF074URD.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF076PVX.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 133.7 MB
ENCFF079OBS.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 9.6 GB
ENCFF085GBJ.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 109.3 MB
ENCFF101FAX.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 132.1 MB
ENCFF103RBD.bam bam (alignments); assembly: hg19; genome annotation: V19 8.9 GB
ENCFF107NPN.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 121.9 MB
ENCFF109JKB.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 130.2 MB
ENCFF114XAS.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 131.8 MB
ENCFF127UXH.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 115.5 MB
ENCFF135HEP.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF136KLB.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.5 MB
ENCFF192LUS.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 10.8 GB
ENCFF215OKM.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF215XAG.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 115.7 MB
ENCFF222IPY.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 149.6 MB
ENCFF230QLB.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 114.5 MB
ENCFF232EKO.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.5 MB
ENCFF252SSX.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 18.7 MB
ENCFF255KSM.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 7.0 MB
ENCFF259UZS.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 12.6 GB
ENCFF265YNP.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 118.3 MB
ENCFF266XWO.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.9 MB
ENCFF293WOL.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 106.3 MB
ENCFF297FUA.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 128.7 MB
ENCFF357VHF.fastq fastq (reads) 4.7 GB
ENCFF373UTT.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 121.0 MB
ENCFF388QST.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 147.7 MB
ENCFF434KJR.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 113.4 MB
ENCFF469HET.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 106.8 MB
ENCFF474NBE.bam bam (alignments); assembly: hg19; genome annotation: V19 9.6 GB
ENCFF474OTN.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 148.0 MB
ENCFF481WWK.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF483XAI.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 108.9 MB
ENCFF487DVN.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 148.0 MB
ENCFF496PUL.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 14.3 GB
ENCFF500FIB.bam bam (alignments); assembly: GRCh38; genome annotation: V24 7.5 GB
ENCFF525VYR.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 134.0 MB
ENCFF526CSO.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 103.9 MB
ENCFF529RNG.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 115.4 MB
ENCFF540IPY.bam bam (alignments); assembly: GRCh38; genome annotation: V24 9.8 GB
ENCFF547WFN.bam bam (alignments); assembly: hg19; genome annotation: V19 7.4 GB
ENCFF552PIH.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 5.6 MB
ENCFF555IIG.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 126.4 MB
ENCFF558CML.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 133.1 MB
ENCFF562ONV.fastq fastq (reads) 4.7 GB
ENCFF562UZW.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF599SMH.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 129.5 MB
ENCFF604RJZ.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 119.1 MB
ENCFF611XZS.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 9.6 GB
ENCFF611YPR.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 129.0 MB
ENCFF611ZCY.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.4 MB
ENCFF612ZGX.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 119.9 MB
ENCFF623QAR.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF642OIA.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 134.0 MB
ENCFF655SEA.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 120.1 MB
ENCFF693LCG.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 135.5 MB
ENCFF698XXO.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 117.6 MB
ENCFF737WXC.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 128.1 MB
ENCFF742PWW.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 5.3 MB
ENCFF749JKY.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 4.5 MB
ENCFF753HGC.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 129.3 MB
ENCFF769NTH.bam bam (alignments); assembly: GRCh38; genome annotation: V24 9.2 GB
ENCFF793HXL.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 149.6 MB
ENCFF800ESX.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 117.2 MB
ENCFF816XCD.bam bam (alignments); assembly: hg19; genome annotation: V19 11.6 GB
ENCFF863EKI.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 118.6 MB
ENCFF864YMD.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 107.2 MB
ENCFF877DDX.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 117.3 MB
ENCFF880VPJ.bam bam (alignments); assembly: GRCh38; genome annotation: V29 9.2 GB
ENCFF906NOM.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF925USS.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 12.7 GB
ENCFF932FFW.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 135.5 MB
ENCFF940HEU.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF968HAV.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 120.3 MB
ENCFF981AXA.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 129.1 MB
ENCFF982OPV.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 131.5 MB
ENCFF996YLT.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.9 MB
ENCSR004OSI ENCSR · via encode_api

shRNA knockdown against DNAJC2 in HepG2 cells followed by RNA-seq. (DNAJC2-57-BGHLV20)

Homo sapiens

92 data files
FileTypeSize
ENCFF004YZO.fastq fastq (reads) 1.9 GB
ENCFF010EYR.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 56.9 MB
ENCFF020MNB.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF021RAI.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 69.8 MB
ENCFF047YWA.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 69.1 MB
ENCFF054GHI.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 63.3 MB
ENCFF065AHU.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 64.5 MB
ENCFF073HKY.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 62.5 MB
ENCFF075QND.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 68.0 MB
ENCFF105ODM.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 72.1 MB
ENCFF132HKJ.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF137KVK.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.9 MB
ENCFF137RFH.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 56.9 MB
ENCFF138FWD.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 56.8 MB
ENCFF194HMI.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 58.1 MB
ENCFF198QWV.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 55.0 MB
ENCFF216MFL.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 65.1 MB
ENCFF224VFW.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 73.5 MB
ENCFF227HWE.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 62.1 MB
ENCFF229CAJ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 58.4 MB
ENCFF246ATH.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 64.2 MB
ENCFF254YMX.fastq fastq (reads) 2.2 GB
ENCFF258ZHJ.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.3 MB
ENCFF266QAS.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 4.3 MB
ENCFF288KSU.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 4.3 GB
ENCFF298ASL.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 68.6 MB
ENCFF299ZDJ.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 65.4 MB
ENCFF314DKE.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF317KRE.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 73.2 MB
ENCFF323EGD.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF339VUO.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 72.3 MB
ENCFF351SSM.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 58.1 MB
ENCFF393BJG.bam bam (alignments); assembly: GRCh38; genome annotation: V29 3.8 GB
ENCFF407RUC.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.8 GB
ENCFF409XIX.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 59.8 MB
ENCFF425NCR.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 60.5 MB
ENCFF437ZDT.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 72.3 MB
ENCFF456KIS.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 4.8 GB
ENCFF490HZK.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.5 GB
ENCFF512WXP.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 68.6 MB
ENCFF518ORC.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.9 MB
ENCFF527FAG.bam bam (alignments); assembly: hg19; genome annotation: V19 3.2 GB
ENCFF534TBB.bam bam (alignments); assembly: hg19; genome annotation: V19 3.7 GB
ENCFF536UPX.bam bam (alignments); assembly: GRCh38; genome annotation: V29 4.1 GB
ENCFF537WFY.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 61.6 MB
ENCFF557NSW.fastq fastq (reads) 2.0 GB
ENCFF568JYS.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 5.1 GB
ENCFF574NLR.fastq fastq (reads) 2.1 GB
ENCFF582HPV.bam bam (alignments); assembly: hg19; genome annotation: V19 3.2 GB
ENCFF585KOA.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 5.6 MB
ENCFF587WZM.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 60.9 MB
ENCFF595LIO.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 60.6 MB
ENCFF601DMY.bam bam (alignments); assembly: hg19; genome annotation: V19 3.4 GB
ENCFF609DQF.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 64.0 MB
ENCFF635OQL.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 61.4 MB
ENCFF640RYU.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF673IGR.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF673KDJ.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 63.1 MB
ENCFF690PPK.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF703SFN.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.3 GB
ENCFF704CGE.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF707CEP.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.7 MB
ENCFF720UWF.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 14.8 MB
ENCFF723JNH.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 69.9 MB
ENCFF725VDX.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 61.3 MB
ENCFF727WJP.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 62.5 MB
ENCFF733TCF.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 53.4 MB
ENCFF753VOC.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 4.7 GB
ENCFF756NBO.bam bam (alignments); assembly: hg19; genome annotation: V19 3.4 GB
ENCFF756OFV.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 4.3 GB
ENCFF759MWQ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 66.1 MB
ENCFF771CSO.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 61.0 MB
ENCFF772QCN.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 60.2 MB
ENCFF793CBP.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 59.3 MB
ENCFF809ILK.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.1 GB
ENCFF830LRL.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 2.8 MB
ENCFF846LYJ.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 65.4 MB
ENCFF851MBU.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 3.3 MB
ENCFF859TJX.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF872CEW.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 67.0 MB
ENCFF878DOO.bam bam (alignments); assembly: hg19; genome annotation: V19 3.9 GB
ENCFF892HZN.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 67.0 MB
ENCFF898KIJ.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 60.8 MB
ENCFF904ONZ.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 73.5 MB
ENCFF910SDM.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF912CPY.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 55.6 MB
ENCFF914OKE.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 4.6 GB
ENCFF916ZJC.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF923SAO.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 59.5 MB
ENCFF950INC.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 56.6 MB
ENCFF957GOQ.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.3 MB
ENCFF996CWM.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCSR125CLF ENCSR · via encode_api

eCLIP control experiment on K562 against IGF2BP1

Homo sapiens

8 data files
FileTypeSize
ENCFF187LSM.bigWig bigWig (minus strand signal of unique reads) 7.2 MB
ENCFF347HAW.bigWig bigWig (plus strand signal of unique reads) 9.9 MB
ENCFF425DPU.bam bam (alignments) 173.8 MB
ENCFF592FNJ.fastq fastq (reads) 251.6 MB
ENCFF609BRP.bigWig bigWig (plus strand signal of unique reads) 10.0 MB
ENCFF672RWL.fastq fastq (reads) 244.8 MB
ENCFF828HOS.bigWig bigWig (minus strand signal of unique reads) 7.2 MB
ENCFF982JPX.bam bam (alignments) 174.7 MB
ENCSR274KWA ENCSR · via encode_api

RNA-seq on HepG2 cells treated with an shRNA knockdown against CNOT7. (CNOT7-BGHLV22)

Homo sapiens

92 data files
FileTypeSize
ENCFF012ETY.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 80.8 MB
ENCFF012NKK.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 5.9 GB
ENCFF030WBR.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 5.3 GB
ENCFF031MBG.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.6 GB
ENCFF046CWT.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.4 MB
ENCFF069RNF.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 86.5 MB
ENCFF075GCC.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 84.8 MB
ENCFF086YMM.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 83.9 MB
ENCFF091EMN.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 81.1 MB
ENCFF095LUU.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF117JXI.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 87.7 MB
ENCFF138KLP.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 93.7 MB
ENCFF142LRH.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.9 MB
ENCFF148XOR.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF162ENT.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 79.5 MB
ENCFF205LQT.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 80.5 MB
ENCFF210WCI.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 88.4 MB
ENCFF214HVQ.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 4.4 MB
ENCFF219ADV.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 80.1 MB
ENCFF226OQL.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 78.7 MB
ENCFF228QPN.bam bam (alignments); assembly: GRCh38; genome annotation: V29 4.6 GB
ENCFF244QCA.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 83.9 MB
ENCFF255JJA.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 5.2 GB
ENCFF264WOI.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF300DOO.bam bam (alignments); assembly: GRCh38; genome annotation: V29 5.0 GB
ENCFF339OWN.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF344QQV.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 78.0 MB
ENCFF354OFD.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 81.1 MB
ENCFF356KRD.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 89.3 MB
ENCFF358TAZ.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 88.4 MB
ENCFF367TGE.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF385AHW.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.4 MB
ENCFF387LJV.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 71.7 MB
ENCFF403EEI.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 15.4 MB
ENCFF403JVF.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF405KSB.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 74.4 MB
ENCFF436NKD.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF440BWM.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 86.5 MB
ENCFF447YWW.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 79.3 MB
ENCFF450UZN.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 3.8 MB
ENCFF462CIA.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 6.3 GB
ENCFF472SON.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 79.3 MB
ENCFF478XEU.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 80.7 MB
ENCFF494VXS.fastq fastq (reads) 2.5 GB
ENCFF506GCX.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 80.8 MB
ENCFF508ZQC.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF518WZQ.fastq fastq (reads) 2.3 GB
ENCFF531TLP.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 83.2 MB
ENCFF547GHE.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 84.9 MB
ENCFF551PXL.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 94.4 MB
ENCFF563VCI.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 77.1 MB
ENCFF570ZSP.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.3 GB
ENCFF579IDB.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 75.8 MB
ENCFF584SAE.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 79.9 MB
ENCFF621NYR.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 3.1 MB
ENCFF628QWN.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.8 MB
ENCFF633NLG.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 85.6 MB
ENCFF638EAT.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 5.6 GB
ENCFF640HHI.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 73.0 MB
ENCFF641IZP.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.0 GB
ENCFF656VWM.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 79.3 MB
ENCFF661WGF.fastq fastq (reads) 2.7 GB
ENCFF679KSO.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF679QWS.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 89.3 MB
ENCFF690GXX.bam bam (alignments); assembly: hg19; genome annotation: V19 4.2 GB
ENCFF707XOB.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF711NKA.bam bam (alignments); assembly: hg19; genome annotation: V19 4.8 GB
ENCFF724IXD.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 81.3 MB
ENCFF739URK.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 74.4 MB
ENCFF774ZTI.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF775BXT.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 82.2 MB
ENCFF784QPD.bam bam (alignments); assembly: hg19; genome annotation: V19 4.5 GB
ENCFF800NZW.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 5.6 GB
ENCFF815QZE.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 94.4 MB
ENCFF817LPW.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 3.0 MB
ENCFF818FPJ.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 84.0 MB
ENCFF821QST.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 85.4 MB
ENCFF844OLF.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 77.2 MB
ENCFF848LEI.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF872GPX.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 79.6 MB
ENCFF875WPZ.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 87.7 MB
ENCFF884OYI.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 95.5 MB
ENCFF890MUT.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 86.9 MB
ENCFF931SNL.bam bam (alignments); assembly: hg19; genome annotation: V19 3.9 GB
ENCFF937QGX.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 75.7 MB
ENCFF940XUO.bam bam (alignments); assembly: GRCh38; genome annotation: V24 5.0 GB
ENCFF948LCD.bam bam (alignments); assembly: hg19; genome annotation: V19 4.2 GB
ENCFF969JBH.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 95.6 MB
ENCFF979PQC.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 5.6 MB
ENCFF983DDC.bam bam (alignments); assembly: hg19; genome annotation: V19 3.9 GB
ENCFF990WYL.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 94.6 MB
ENCFF999GET.fastq fastq (reads) 2.5 GB
ENCSR945NSF ENCSR · via encode_api

PCBP2 ChIP-seq on HepG2

Homo sapiens

44 data files
FileTypeSize
ENCFF025TLA.bam bam (unfiltered alignments); assembly: hg19 1.9 GB
ENCFF033VWK.bigBed bigBed (optimal IDR thresholded peaks); assembly: GRCh38 161.7 KB
ENCFF043DMT.bigBed bigBed (conservative IDR thresholded peaks); assembly: hg19 186.0 KB
ENCFF047XOP.bigBed bigBed (peaks and background as input for IDR); assembly: hg19 10.6 MB
ENCFF057DYX.bed bed (conservative IDR thresholded peaks); assembly: GRCh38 63.4 KB
ENCFF068FIG.bigBed bigBed (optimal IDR thresholded peaks); assembly: hg19 191.5 KB
ENCFF110RBL.bigWig bigWig (signal p-value); assembly: hg19 682.5 MB
ENCFF155AMR.bed bed (peaks and background as input for IDR); assembly: hg19 5.0 MB
ENCFF174MCF.bed bed (peaks and background as input for IDR); assembly: hg19 5.1 MB
ENCFF178TOV.bam bam (alignments); assembly: GRCh38 529.8 MB
ENCFF215BZF.bigWig bigWig (fold change over control); assembly: hg19 444.0 MB
ENCFF223XLR.fastq fastq (reads) 1.2 GB
ENCFF235GEZ.bigBed bigBed (peaks and background as input for IDR); assembly: GRCh38 12.8 MB
ENCFF238LLZ.fastq fastq (reads) 683.6 MB
ENCFF272PBW.bigWig bigWig (signal p-value); assembly: GRCh38 672.1 MB
ENCFF308JXP.bed bed (peaks and background as input for IDR); assembly: GRCh38 6.1 MB
ENCFF320TJQ.bigWig bigWig (fold change over control); assembly: hg19 718.9 MB
ENCFF331BYR.bigWig bigWig (signal p-value); assembly: hg19 662.9 MB
ENCFF336JMA.bigBed bigBed (peaks and background as input for IDR); assembly: GRCh38 10.6 MB
ENCFF366PYR.bam bam (alignments); assembly: hg19 530.4 MB
ENCFF376FRT.bigWig bigWig (fold change over control); assembly: hg19 461.8 MB
ENCFF433SRS.bed bed (peaks and background as input for IDR); assembly: GRCh38 5.0 MB
ENCFF460OWI.bed bed (optimal IDR thresholded peaks); assembly: hg19 71.7 KB
ENCFF476UCM.bigBed bigBed (conservative IDR thresholded peaks); assembly: GRCh38 151.7 KB
ENCFF479DBP.bam bam (alignments); assembly: GRCh38 499.9 MB
ENCFF487FNL.bigWig bigWig (signal p-value); assembly: GRCh38 795.1 MB
ENCFF526LXS.bigBed bigBed (peaks and background as input for IDR); assembly: hg19 12.8 MB
ENCFF547YIN.bed bed (peaks and background as input for IDR); assembly: GRCh38 5.1 MB
ENCFF574KTG.bed bed (peaks and background as input for IDR); assembly: hg19 6.1 MB
ENCFF616IMX.bigBed bigBed (peaks and background as input for IDR); assembly: hg19 10.5 MB
ENCFF616NXH.bam bam (unfiltered alignments); assembly: GRCh38 1.9 GB
ENCFF629GVZ.bam bam (unfiltered alignments); assembly: GRCh38 1.8 GB
ENCFF642XRH.bed bed (optimal IDR thresholded peaks); assembly: GRCh38 70.2 KB
ENCFF667WJG.bigWig bigWig (fold change over control); assembly: GRCh38 452.5 MB
ENCFF707DIF.bigWig bigWig (fold change over control); assembly: GRCh38 710.2 MB
ENCFF774WWF.fastq fastq (reads) 718.7 MB
ENCFF879NWR.bigBed bigBed (peaks and background as input for IDR); assembly: GRCh38 10.6 MB
ENCFF882EOS.bed bed (conservative IDR thresholded peaks); assembly: hg19 68.1 KB
ENCFF889WJX.bigWig bigWig (signal p-value); assembly: GRCh38 673.0 MB
ENCFF910CBX.bam bam (unfiltered alignments); assembly: hg19 1.8 GB
ENCFF910NGM.bam bam (alignments); assembly: hg19 500.5 MB
ENCFF915BDU.fastq fastq (reads) 1.3 GB
ENCFF966JON.bigWig bigWig (signal p-value); assembly: hg19 730.8 MB
ENCFF970PDE.bigWig bigWig (fold change over control); assembly: GRCh38 446.4 MB
ENCSR863ZGZ ENCSR · via encode_api

eCLIP control experiment on K562 against LARP7

Homo sapiens

8 data files
FileTypeSize
ENCFF085TYL.bigWig bigWig (plus strand signal of unique reads) 15.7 MB
ENCFF351JZY.bigWig bigWig (minus strand signal of unique reads) 15.1 MB
ENCFF476ASR.fastq fastq (reads) 436.6 MB
ENCFF480XFE.bigWig bigWig (plus strand signal of unique reads) 15.7 MB
ENCFF487BLB.bam bam (alignments) 299.5 MB
ENCFF699GNU.bam bam (alignments) 299.3 MB
ENCFF967IQR.fastq fastq (reads) 428.0 MB
ENCFF987WXS.bigWig bigWig (minus strand signal of unique reads) 15.1 MB
ENCSR210KJB ENCSR · via encode_api

shRNA knockdown against RRP9 in K562 cells followed by RNA-seq. (RRP9_BGKLV19)

Homo sapiens

92 data files
FileTypeSize
ENCFF007FYS.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 3.9 MB
ENCFF009SKB.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 70.1 MB
ENCFF010CMZ.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 69.8 MB
ENCFF019EYX.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 63.0 MB
ENCFF044DKC.fastq fastq (reads) 2.1 GB
ENCFF044OJM.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 72.1 MB
ENCFF050RNX.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 60.4 MB
ENCFF052YJZ.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 71.3 MB
ENCFF056KOZ.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 69.0 MB
ENCFF060VTF.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF061FRJ.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF070AFP.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 58.5 MB
ENCFF072LRO.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 63.9 MB
ENCFF078VJR.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.9 MB
ENCFF079UMS.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF084ITS.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 5.2 GB
ENCFF098HBF.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 61.9 MB
ENCFF119KNQ.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 62.4 MB
ENCFF121CAE.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 70.1 MB
ENCFF139QLC.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.3 MB
ENCFF159ZNZ.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF170ZMY.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 70.2 MB
ENCFF189UAR.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 63.3 MB
ENCFF197LGC.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 14.6 MB
ENCFF197OQZ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 59.8 MB
ENCFF258TLZ.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF260VUH.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 63.8 MB
ENCFF261MUU.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 64.6 MB
ENCFF272JZW.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 62.6 MB
ENCFF281XFJ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 60.2 MB
ENCFF288GAY.fastq fastq (reads) 2.2 GB
ENCFF300YGP.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 65.0 MB
ENCFF306ATN.bam bam (alignments); assembly: hg19; genome annotation: V19 3.8 GB
ENCFF336PUP.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 5.7 GB
ENCFF336YGK.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 63.5 MB
ENCFF343LQR.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 58.0 MB
ENCFF345JOD.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 63.5 MB
ENCFF349DGX.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF357ADB.bam bam (alignments); assembly: GRCh38; genome annotation: V29 4.1 GB
ENCFF361CKX.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF362VKN.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.9 MB
ENCFF366SJK.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 61.4 MB
ENCFF370FDT.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.1 GB
ENCFF373FWY.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.0 GB
ENCFF402DPG.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 5.0 GB
ENCFF412EBR.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF436BNF.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 5.3 GB
ENCFF439WJA.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF453RUA.bam bam (alignments); assembly: hg19; genome annotation: V19 3.2 GB
ENCFF463OEH.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 63.3 MB
ENCFF467ALM.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 61.6 MB
ENCFF485BWN.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 60.8 MB
ENCFF487QCV.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 69.0 MB
ENCFF508ORM.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 63.5 MB
ENCFF526TMS.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.2 GB
ENCFF527VUT.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF539UFL.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF542YQH.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 6.0 GB
ENCFF578YOF.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 65.4 MB
ENCFF593MYK.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 4.2 MB
ENCFF594SPZ.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 60.2 MB
ENCFF595HHW.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 71.1 MB
ENCFF623HEL.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 68.8 MB
ENCFF625YDA.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 61.9 MB
ENCFF648ZMK.fastq fastq (reads) 2.2 GB
ENCFF665XYO.fastq fastq (reads) 2.1 GB
ENCFF670GWE.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 64.8 MB
ENCFF705SXO.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 63.4 MB
ENCFF708UCZ.bam bam (alignments); assembly: hg19; genome annotation: V19 3.2 GB
ENCFF716AMC.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 65.4 MB
ENCFF717ZSO.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 71.0 MB
ENCFF718XKT.bam bam (alignments); assembly: GRCh38; genome annotation: V29 4.0 GB
ENCFF750ECA.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.3 GB
ENCFF758FII.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 62.8 MB
ENCFF771GYV.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.8 MB
ENCFF775CLV.bam bam (alignments); assembly: hg19; genome annotation: V19 3.9 GB
ENCFF806CKX.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 58.4 MB
ENCFF829IXC.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 62.0 MB
ENCFF830OTU.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 3.4 MB
ENCFF842IKN.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 59.9 MB
ENCFF852NOR.bam bam (alignments); assembly: hg19; genome annotation: V19 3.2 GB
ENCFF855LGZ.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 5.5 MB
ENCFF884XIE.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 5.0 GB
ENCFF897NVL.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.3 MB
ENCFF928NNX.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 59.2 MB
ENCFF932PRH.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 65.0 MB
ENCFF936NIH.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 72.2 MB
ENCFF940BIE.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 66.7 MB
ENCFF943DLA.bam bam (alignments); assembly: hg19; genome annotation: V19 3.2 GB
ENCFF950KTW.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 65.2 MB
ENCFF969FIV.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 64.4 MB
ENCFF999BYI.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCSR651NUF ENCSR · via encode_api

eCLIP control experiment on K562 against EIF4G2

Homo sapiens

8 data files
FileTypeSize
ENCFF009NZR.bigWig bigWig (plus strand signal of unique reads) 19.4 MB
ENCFF013DLR.fastq fastq (reads) 529.1 MB
ENCFF380JNI.bigWig bigWig (minus strand signal of unique reads) 18.9 MB
ENCFF425TFV.bigWig bigWig (plus strand signal of unique reads) 19.5 MB
ENCFF467NGI.bigWig bigWig (minus strand signal of unique reads) 18.7 MB
ENCFF551LIR.bam bam (alignments) 327.8 MB
ENCFF566LOT.fastq fastq (reads) 515.1 MB
ENCFF956SAT.bam bam (alignments) 328.6 MB
ENCSR820GBM ENCSR · via encode_api

eCLIP control experiment on K562 against SLTM

Homo sapiens

8 data files
FileTypeSize
ENCFF048VBN.bam bam (alignments); assembly: GRCh38 391.9 MB
ENCFF076TJQ.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 22.5 MB
ENCFF266KVU.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 23.2 MB
ENCFF266WBL.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 22.8 MB
ENCFF457TVS.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 23.4 MB
ENCFF699JUE.fastq fastq (reads) 492.9 MB
ENCFF864EZE.fastq fastq (reads) 510.2 MB
ENCFF869ACG.bam bam (alignments); assembly: hg19 390.3 MB
ENCSR876NDK ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) input control experiment of SRSF5 or TAF15

1 data file
FileTypeSize
ENCFF325RIN.fastq fastq (reads) 455.9 MB
ENCSR880DEH ENCSR · via encode_api

RNA-seq on HepG2 cells treated with an shRNA knockdown against PNPT1. (PNPT1-BGHLV22)

Homo sapiens

92 data files
FileTypeSize
ENCFF008MCY.tsv tsv (differential expression quantifications) 4.2 MB
ENCFF016CQJ.bigWig bigWig (plus strand signal of all reads) 74.8 MB
ENCFF056AWY.tsv tsv (gene quantifications) 9.1 MB
ENCFF062ENB.bam bam (transcriptome alignments) 6.5 GB
ENCFF068IFM.bigWig bigWig (minus strand signal of unique reads) 73.2 MB
ENCFF079ZJD.bam bam (transcriptome alignments) 6.5 GB
ENCFF088JGF.bigWig bigWig (minus strand signal of unique reads) 73.3 MB
ENCFF095THH.bigWig bigWig (plus strand signal of unique reads) 75.5 MB
ENCFF109QOA.bigWig bigWig (minus strand signal of all reads) 87.7 MB
ENCFF136YPX.bigWig bigWig (minus strand signal of unique reads) 73.9 MB
ENCFF149CEL.bigWig bigWig (minus strand signal of all reads) 81.0 MB
ENCFF166FVL.tsv tsv (gene quantifications) 10.4 MB
ENCFF185LAU.bigWig bigWig (plus strand signal of all reads) 88.7 MB
ENCFF201PGY.tar tar (differential splicing quantifications) 3.1 MB
ENCFF233MDR.tar tar (differential splicing quantifications) 15.3 MB
ENCFF246RAD.tsv tsv (transcript quantifications) 24.9 MB
ENCFF262ZNL.tar tar (differential splicing quantifications) 3.7 MB
ENCFF272VCH.bigWig bigWig (minus strand signal of all reads) 81.0 MB
ENCFF277POX.bigWig bigWig (plus strand signal of unique reads) 73.2 MB
ENCFF300KQD.bigWig bigWig (plus strand signal of unique reads) 79.0 MB
ENCFF319LBG.tsv tsv (gene quantifications) 9.5 MB
ENCFF357NHF.bigWig bigWig (plus strand signal of all reads) 72.7 MB
ENCFF381OYB.bigWig bigWig (minus strand signal of all reads) 86.8 MB
ENCFF383NQV.bigWig bigWig (plus strand signal of all reads) 81.0 MB
ENCFF409XFZ.bigWig bigWig (minus strand signal of all reads) 87.7 MB
ENCFF413ZFC.bigWig bigWig (minus strand signal of unique reads) 66.1 MB
ENCFF414TIQ.tsv tsv (transcript quantifications) 25.3 MB
ENCFF414YIJ.bigWig bigWig (minus strand signal of unique reads) 73.5 MB
ENCFF417YNM.bigWig bigWig (plus strand signal of unique reads) 74.5 MB
ENCFF421YVD.bigWig bigWig (minus strand signal of unique reads) 72.2 MB
ENCFF437DTH.bigWig bigWig (plus strand signal of all reads) 78.4 MB
ENCFF439NOG.bigWig bigWig (plus strand signal of all reads) 81.5 MB
ENCFF447EEQ.bam bam (alignments) 4.0 GB
ENCFF454JXK.tsv tsv (gene quantifications) 10.4 MB
ENCFF469FWV.bigWig bigWig (minus strand signal of all reads) 71.8 MB
ENCFF476JSO.bigWig bigWig (plus strand signal of unique reads) 70.5 MB
ENCFF481KRL.tsv tsv (gene quantifications) 9.4 MB
ENCFF497AYF.bam bam (alignments) 4.2 GB
ENCFF517NIP.fastq fastq (reads) 2.5 GB
ENCFF517SPL.bigWig bigWig (minus strand signal of all reads) 77.2 MB
ENCFF524HCW.bigWig bigWig (plus strand signal of unique reads) 70.3 MB
ENCFF527IAU.bam bam (alignments) 4.0 GB
ENCFF533VRI.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF535HWD.tsv tsv (transcript quantifications) 29.8 MB
ENCFF568WCA.bigWig bigWig (minus strand signal of all reads) 80.3 MB
ENCFF602DAT.bam bam (alignments) 4.4 GB
ENCFF634AYV.bam bam (alignments) 4.9 GB
ENCFF634OYA.bam bam (transcriptome alignments) 5.8 GB
ENCFF640IUW.bigWig bigWig (plus strand signal of unique reads) 74.5 MB
ENCFF642NRZ.fastq fastq (reads) 2.8 GB
ENCFF666ZBW.bam bam (transcriptome alignments) 5.8 GB
ENCFF672AQS.bigWig bigWig (minus strand signal of all reads) 80.5 MB
ENCFF706ILO.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF711KMG.bam bam (alignments) 4.5 GB
ENCFF713WHR.tsv tsv (gene quantifications) 9.1 MB
ENCFF713XBL.bam bam (alignments) 4.7 GB
ENCFF714HKL.bigWig bigWig (minus strand signal of unique reads) 77.2 MB
ENCFF721PGU.bigWig bigWig (plus strand signal of all reads) 81.6 MB
ENCFF741SFI.bigWig bigWig (plus strand signal of all reads) 80.1 MB
ENCFF747YGH.bigWig bigWig (plus strand signal of unique reads) 73.5 MB
ENCFF748PCH.bigWig bigWig (minus strand signal of unique reads) 69.4 MB
ENCFF756FTP.tsv tsv (transcript quantifications) 27.3 MB
ENCFF766CNH.bam bam (alignments) 5.4 GB
ENCFF769NCC.fastq fastq (reads) 2.6 GB
ENCFF771AHF.bam bam (alignments) 5.4 GB
ENCFF772HMR.tsv tsv (transcript quantifications) 27.3 MB
ENCFF798YMD.bigWig bigWig (minus strand signal of all reads) 79.2 MB
ENCFF823IDH.bam bam (alignments) 4.9 GB
ENCFF826MKR.bigWig bigWig (plus strand signal of unique reads) 78.8 MB
ENCFF834JHJ.tsv tsv (transcript quantifications) 25.3 MB
ENCFF835VQH.tsv tsv (transcript quantifications) 24.9 MB
ENCFF838XNC.bigWig bigWig (minus strand signal of unique reads) 69.0 MB
ENCFF864ICF.tsv tsv (transcript quantifications) 29.8 MB
ENCFF864XBZ.bigWig bigWig (plus strand signal of all reads) 87.7 MB
ENCFF875SZJ.bam bam (alignments) 5.2 GB
ENCFF881HFB.bam bam (alignments) 4.4 GB
ENCFF883DXE.fastq fastq (reads) 2.9 GB
ENCFF888ESU.bigWig bigWig (plus strand signal of all reads) 81.6 MB
ENCFF892ZOX.bigWig bigWig (minus strand signal of unique reads) 77.4 MB
ENCFF898AGZ.bigWig bigWig (plus strand signal of unique reads) 74.9 MB
ENCFF899MQS.bigWig bigWig (minus strand signal of unique reads) 71.4 MB
ENCFF902KBI.bigWig bigWig (minus strand signal of all reads) 74.2 MB
ENCFF904UZK.bigWig bigWig (minus strand signal of all reads) 74.7 MB
ENCFF915VQG.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF920GSJ.bigWig bigWig (plus strand signal of all reads) 75.6 MB
ENCFF935TPW.bam bam (transcriptome alignments) 6.4 GB
ENCFF935TUI.bigWig bigWig (plus strand signal of unique reads) 67.6 MB
ENCFF938ROG.bigWig bigWig (minus strand signal of unique reads) 77.4 MB
ENCFF944WGV.bigWig bigWig (plus strand signal of unique reads) 79.1 MB
ENCFF976JZW.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF983KED.bigWig bigWig (plus strand signal of all reads) 88.6 MB
ENCFF992MBI.bam bam (transcriptome alignments) 7.3 GB
ENCSR118XYK ENCSR · via encode_api

RNA-seq on K562 cells treated with an shRNA knockdown against PUM2. (PUM2-BGKLV25)

Homo sapiens

92 data files
FileTypeSize
ENCFF030DLY.bigWig bigWig (plus strand signal of unique reads) 121.3 MB
ENCFF048COV.bam bam (alignments) 8.4 GB
ENCFF057TBB.tsv tsv (gene quantifications) 9.1 MB
ENCFF058DXT.bam bam (alignments) 8.5 GB
ENCFF069YEV.tsv tsv (transcript quantifications) 25.4 MB
ENCFF071BYE.tsv tsv (transcript quantifications) 29.9 MB
ENCFF071LUS.bigWig bigWig (plus strand signal of unique reads) 118.3 MB
ENCFF073CHU.bigWig bigWig (minus strand signal of unique reads) 117.1 MB
ENCFF090LDF.bigWig bigWig (plus strand signal of unique reads) 122.7 MB
ENCFF102QBL.bigWig bigWig (plus strand signal of all reads) 150.9 MB
ENCFF121HXY.bigWig bigWig (plus strand signal of all reads) 135.0 MB
ENCFF130UMU.bigWig bigWig (plus strand signal of all reads) 148.9 MB
ENCFF134NMN.bam bam (transcriptome alignments) 12.7 GB
ENCFF157JOK.bigWig bigWig (plus strand signal of all reads) 145.5 MB
ENCFF169DCY.bigWig bigWig (minus strand signal of unique reads) 118.5 MB
ENCFF196PBV.tsv tsv (differential expression quantifications) 4.6 MB
ENCFF197QFH.bigWig bigWig (plus strand signal of all reads) 132.0 MB
ENCFF217GTE.tsv tsv (differential expression quantifications) 2.0 MB
ENCFF232SRI.bigWig bigWig (minus strand signal of all reads) 132.9 MB
ENCFF244VHV.tsv tsv (gene quantifications) 9.5 MB
ENCFF244ZMY.bigWig bigWig (plus strand signal of all reads) 126.6 MB
ENCFF253QVZ.bam bam (transcriptome alignments) 11.2 GB
ENCFF258HKP.tsv tsv (gene quantifications) 9.1 MB
ENCFF273SDG.bigWig bigWig (minus strand signal of unique reads) 130.6 MB
ENCFF275JUI.bam bam (alignments) 8.4 GB
ENCFF277TMF.bigWig bigWig (minus strand signal of all reads) 143.8 MB
ENCFF287GRF.bigWig bigWig (minus strand signal of unique reads) 126.9 MB
ENCFF306BHG.bigWig bigWig (plus strand signal of unique reads) 134.0 MB
ENCFF306JOX.bigWig bigWig (minus strand signal of all reads) 147.2 MB
ENCFF308VWT.bigWig bigWig (minus strand signal of unique reads) 127.4 MB
ENCFF310DMD.bigWig bigWig (plus strand signal of unique reads) 120.2 MB
ENCFF318UEY.bigWig bigWig (minus strand signal of unique reads) 119.8 MB
ENCFF343HUB.tsv tsv (transcript quantifications) 29.9 MB
ENCFF351NXZ.fastq fastq (reads) 5.4 GB
ENCFF361UUV.bigWig bigWig (plus strand signal of all reads) 131.8 MB
ENCFF373MZP.tar tar (differential splicing quantifications) 5.3 MB
ENCFF377JYV.bigWig bigWig (minus strand signal of unique reads) 120.1 MB
ENCFF412ETC.bigWig bigWig (minus strand signal of all reads) 149.3 MB
ENCFF415BSE.bigWig bigWig (minus strand signal of all reads) 126.6 MB
ENCFF442FIF.bigWig bigWig (minus strand signal of all reads) 144.8 MB
ENCFF472IJX.bigWig bigWig (minus strand signal of all reads) 144.8 MB
ENCFF475JMM.tsv tsv (gene quantifications) 10.4 MB
ENCFF501WUZ.bigWig bigWig (minus strand signal of all reads) 130.3 MB
ENCFF504CIR.bigWig bigWig (plus strand signal of unique reads) 129.9 MB
ENCFF511PQV.bigWig bigWig (minus strand signal of unique reads) 127.1 MB
ENCFF516CDU.bigWig bigWig (plus strand signal of unique reads) 130.0 MB
ENCFF518JIH.bigWig bigWig (plus strand signal of unique reads) 119.1 MB
ENCFF526XOE.bigWig bigWig (minus strand signal of all reads) 149.3 MB
ENCFF528YMN.bam bam (transcriptome alignments) 11.5 GB
ENCFF537WVS.tar tar (differential splicing quantifications) 7.1 MB
ENCFF538HPZ.bigWig bigWig (plus strand signal of all reads) 146.5 MB
ENCFF543CIU.bam bam (alignments) 10.2 GB
ENCFF559RJC.bigWig bigWig (minus strand signal of unique reads) 131.3 MB
ENCFF567FKI.bigWig bigWig (plus strand signal of unique reads) 133.3 MB
ENCFF596IIJ.bam bam (alignments) 10.4 GB
ENCFF598HSO.tsv tsv (gene quantifications) 9.5 MB
ENCFF617SWH.fastq fastq (reads) 5.4 GB
ENCFF619PCU.bam bam (alignments) 8.3 GB
ENCFF627FWA.bigWig bigWig (minus strand signal of unique reads) 131.0 MB
ENCFF648RQY.tsv tsv (transcript quantifications) 27.6 MB
ENCFF648XTO.fastq fastq (reads) 5.5 GB
ENCFF654RKB.bam bam (alignments) 10.0 GB
ENCFF682ACI.bigWig bigWig (plus strand signal of unique reads) 122.5 MB
ENCFF697DTC.tsv tsv (gene quantifications) 10.4 MB
ENCFF714NOK.bam bam (transcriptome alignments) 11.2 GB
ENCFF716KNM.bigWig bigWig (plus strand signal of all reads) 128.2 MB
ENCFF726WHQ.bigWig bigWig (plus strand signal of all reads) 150.9 MB
ENCFF733FCZ.bigWig bigWig (minus strand signal of unique reads) 115.4 MB
ENCFF734QSH.tsv tsv (differential expression quantifications) 1.8 MB
ENCFF735KTG.bam bam (alignments) 10.1 GB
ENCFF781OAE.tsv tsv (transcript quantifications) 24.9 MB
ENCFF784EGE.bigWig bigWig (minus strand signal of all reads) 128.6 MB
ENCFF801SMN.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF803RGM.tsv tsv (transcript quantifications) 24.9 MB
ENCFF812ISQ.bigWig bigWig (plus strand signal of all reads) 130.8 MB
ENCFF829OPZ.tsv tsv (transcript quantifications) 27.6 MB
ENCFF835NIZ.bam bam (transcriptome alignments) 13.0 GB
ENCFF842AXS.bam bam (alignments) 10.4 GB
ENCFF893TSP.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF898WHL.bam bam (alignments) 10.2 GB
ENCFF904SDU.bigWig bigWig (minus strand signal of all reads) 129.8 MB
ENCFF939IRY.tsv tsv (transcript quantifications) 25.4 MB
ENCFF941JGA.fastq fastq (reads) 5.4 GB
ENCFF944VQH.bigWig bigWig (minus strand signal of all reads) 124.4 MB
ENCFF951OKA.bigWig bigWig (plus strand signal of unique reads) 129.6 MB
ENCFF960VON.bam bam (alignments) 8.3 GB
ENCFF968ZES.bigWig bigWig (plus strand signal of all reads) 146.5 MB
ENCFF976UEN.bigWig bigWig (plus strand signal of unique reads) 134.0 MB
ENCFF990MEA.bam bam (transcriptome alignments) 11.6 GB
ENCFF995HWT.tar tar (differential splicing quantifications) 19.0 MB
ENCFF997PJE.bam bam (alignments) 8.3 GB
ENCFF997RMY.bigWig bigWig (minus strand signal of unique reads) 116.8 MB
ENCSR243IGA ENCSR · via encode_api

RNA-seq on HepG2 cells treated with an shRNA knockdown against HSPD1. (HSPD1_BGHLV27)

Homo sapiens

92 data files
FileTypeSize
ENCFF005REZ.bigWig bigWig (plus strand signal of all reads) 101.6 MB
ENCFF006BAX.bigWig bigWig (minus strand signal of unique reads) 96.3 MB
ENCFF020CWA.bam bam (alignments) 4.1 GB
ENCFF029VXP.bigWig bigWig (minus strand signal of unique reads) 93.2 MB
ENCFF031CDS.bigWig bigWig (minus strand signal of unique reads) 98.6 MB
ENCFF034FNO.bigWig bigWig (minus strand signal of unique reads) 80.8 MB
ENCFF046IQT.bam bam (alignments) 4.9 GB
ENCFF058ZTI.bigWig bigWig (plus strand signal of unique reads) 78.9 MB
ENCFF059FZD.bam bam (transcriptome alignments) 8.4 GB
ENCFF069JVV.bigWig bigWig (plus strand signal of all reads) 109.9 MB
ENCFF081ITK.tar tar (differential splicing quantifications) 16.6 MB
ENCFF081WXN.bigWig bigWig (plus strand signal of all reads) 111.9 MB
ENCFF097ZBH.fastq fastq (reads) 3.6 GB
ENCFF102WJB.tsv tsv (transcript quantifications) 24.9 MB
ENCFF109GGW.tsv tsv (gene quantifications) 10.4 MB
ENCFF110MZE.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF114OHH.bam bam (transcriptome alignments) 9.5 GB
ENCFF148COR.bigWig bigWig (minus strand signal of unique reads) 84.6 MB
ENCFF161LMS.bigWig bigWig (plus strand signal of unique reads) 82.5 MB
ENCFF180NYX.bigWig bigWig (plus strand signal of unique reads) 91.8 MB
ENCFF188TIX.bigWig bigWig (minus strand signal of unique reads) 80.7 MB
ENCFF189GIC.bigWig bigWig (minus strand signal of all reads) 110.2 MB
ENCFF196ATZ.bam bam (alignments) 6.4 GB
ENCFF221UDX.bam bam (transcriptome alignments) 7.7 GB
ENCFF225AZA.bigWig bigWig (plus strand signal of all reads) 103.9 MB
ENCFF232PKX.bigWig bigWig (minus strand signal of all reads) 97.1 MB
ENCFF245YLU.tsv tsv (transcript quantifications) 25.0 MB
ENCFF251NVD.bigWig bigWig (minus strand signal of all reads) 86.3 MB
ENCFF252CML.bigWig bigWig (plus strand signal of unique reads) 86.8 MB
ENCFF254BOR.bigWig bigWig (minus strand signal of all reads) 87.9 MB
ENCFF255QOI.bigWig bigWig (minus strand signal of all reads) 83.3 MB
ENCFF282FHV.bam bam (alignments) 4.9 GB
ENCFF287IED.tsv tsv (gene quantifications) 9.1 MB
ENCFF289BDY.bigWig bigWig (plus strand signal of unique reads) 100.9 MB
ENCFF309JCI.bigWig bigWig (plus strand signal of unique reads) 86.8 MB
ENCFF342YGM.bigWig bigWig (plus strand signal of unique reads) 95.7 MB
ENCFF344BZD.tsv tsv (gene quantifications) 9.5 MB
ENCFF348JJV.bigWig bigWig (plus strand signal of unique reads) 82.7 MB
ENCFF356YGC.tsv tsv (differential expression quantifications) 2.0 MB
ENCFF358MCL.tsv tsv (transcript quantifications) 27.4 MB
ENCFF359GYZ.bam bam (alignments) 6.0 GB
ENCFF363SRD.bigWig bigWig (plus strand signal of all reads) 84.7 MB
ENCFF366WTM.bigWig bigWig (minus strand signal of all reads) 94.8 MB
ENCFF387IYN.bigWig bigWig (plus strand signal of all reads) 94.4 MB
ENCFF394ADM.bam bam (alignments) 4.0 GB
ENCFF407JIM.bigWig bigWig (minus strand signal of unique reads) 89.4 MB
ENCFF413YCT.bigWig bigWig (plus strand signal of all reads) 98.8 MB
ENCFF419ZDJ.bigWig bigWig (plus strand signal of unique reads) 95.4 MB
ENCFF431YSU.bigWig bigWig (minus strand signal of all reads) 94.9 MB
ENCFF448ECX.bigWig bigWig (plus strand signal of unique reads) 86.7 MB
ENCFF451UPR.bigWig bigWig (minus strand signal of all reads) 100.2 MB
ENCFF456BHI.bam bam (alignments) 5.2 GB
ENCFF471QSO.bam bam (alignments) 4.9 GB
ENCFF474GVV.tsv tsv (transcript quantifications) 25.3 MB
ENCFF482EAP.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF501BPS.tsv tsv (transcript quantifications) 29.8 MB
ENCFF502VAQ.tsv tsv (gene quantifications) 10.4 MB
ENCFF530CSW.bigWig bigWig (plus strand signal of all reads) 96.3 MB
ENCFF571RBY.bigWig bigWig (minus strand signal of unique reads) 77.0 MB
ENCFF574DFM.bigWig bigWig (plus strand signal of all reads) 89.5 MB
ENCFF575FSI.bigWig bigWig (plus strand signal of all reads) 111.9 MB
ENCFF580JDR.bigWig bigWig (minus strand signal of all reads) 108.5 MB
ENCFF603XFG.bigWig bigWig (plus strand signal of unique reads) 100.8 MB
ENCFF621DZC.bam bam (transcriptome alignments) 6.8 GB
ENCFF651MLB.tsv tsv (gene quantifications) 9.1 MB
ENCFF652QOJ.bigWig bigWig (minus strand signal of unique reads) 93.7 MB
ENCFF664KEC.bam bam (alignments) 4.0 GB
ENCFF670NYL.fastq fastq (reads) 3.6 GB
ENCFF694OIJ.tar tar (differential splicing quantifications) 4.4 MB
ENCFF708IDJ.bigWig bigWig (plus strand signal of all reads) 96.3 MB
ENCFF711DGE.bigWig bigWig (minus strand signal of unique reads) 98.5 MB
ENCFF718YCG.bam bam (alignments) 5.1 GB
ENCFF722KHW.bam bam (alignments) 6.4 GB
ENCFF748RAF.bigWig bigWig (minus strand signal of unique reads) 84.7 MB
ENCFF792OOO.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF823IPD.bam bam (alignments) 5.1 GB
ENCFF833TPM.bigWig bigWig (minus strand signal of unique reads) 84.8 MB
ENCFF843YPL.tsv tsv (transcript quantifications) 25.4 MB
ENCFF858INX.tar tar (differential splicing quantifications) 3.7 MB
ENCFF859VYI.bam bam (transcriptome alignments) 6.8 GB
ENCFF865QCD.bigWig bigWig (minus strand signal of all reads) 93.2 MB
ENCFF869KEG.fastq fastq (reads) 2.9 GB
ENCFF869UGZ.bigWig bigWig (minus strand signal of all reads) 110.2 MB
ENCFF895GCS.bigWig bigWig (plus strand signal of all reads) 87.6 MB
ENCFF921UTY.fastq fastq (reads) 2.9 GB
ENCFF928EZP.tsv tsv (differential expression quantifications) 4.3 MB
ENCFF949VBS.bigWig bigWig (minus strand signal of all reads) 102.3 MB
ENCFF954HYY.tsv tsv (transcript quantifications) 27.4 MB
ENCFF955DNW.tsv tsv (transcript quantifications) 29.9 MB
ENCFF957UQP.bigWig bigWig (plus strand signal of unique reads) 98.6 MB
ENCFF969JNB.bam bam (transcriptome alignments) 8.3 GB
ENCFF980LDW.tsv tsv (gene quantifications) 9.5 MB
ENCSR267RHP ENCSR · via encode_api

RNA-seq on K562 cells treated with an shRNA knockdown against BUD13. (BUD13_BGKLV29)

Homo sapiens

92 data files
FileTypeSize
ENCFF022PON.tsv tsv (gene quantifications) 9.4 MB
ENCFF032VVO.bigWig bigWig (minus strand signal of unique reads) 71.5 MB
ENCFF036SIG.tsv tsv (gene quantifications) 9.1 MB
ENCFF040FBR.bigWig bigWig (minus strand signal of all reads) 78.8 MB
ENCFF049AUC.bigWig bigWig (minus strand signal of all reads) 84.9 MB
ENCFF065NGC.tsv tsv (gene quantifications) 9.4 MB
ENCFF070WME.bigWig bigWig (plus strand signal of all reads) 70.6 MB
ENCFF082OJZ.bigWig bigWig (minus strand signal of all reads) 87.5 MB
ENCFF084WDW.bigWig bigWig (plus strand signal of unique reads) 68.8 MB
ENCFF088UOW.bigWig bigWig (plus strand signal of unique reads) 69.3 MB
ENCFF101BYW.fastq fastq (reads) 2.8 GB
ENCFF104PNS.bigWig bigWig (plus strand signal of unique reads) 74.7 MB
ENCFF105EJR.bigWig bigWig (plus strand signal of unique reads) 82.5 MB
ENCFF106RKP.bigWig bigWig (plus strand signal of all reads) 93.2 MB
ENCFF115MAM.bam bam (alignments) 5.4 GB
ENCFF177JQG.tar tar (differential splicing quantifications) 4.4 MB
ENCFF196EZN.bigWig bigWig (minus strand signal of unique reads) 76.5 MB
ENCFF198TSV.bam bam (alignments) 5.4 GB
ENCFF212AZG.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF215HSM.bigWig bigWig (minus strand signal of all reads) 87.5 MB
ENCFF225KSU.bigWig bigWig (minus strand signal of unique reads) 79.9 MB
ENCFF233EHX.tsv tsv (transcript quantifications) 27.4 MB
ENCFF238MSD.bigWig bigWig (plus strand signal of all reads) 85.9 MB
ENCFF242OLO.bigWig bigWig (plus strand signal of all reads) 80.2 MB
ENCFF255WZZ.bam bam (alignments) 5.4 GB
ENCFF257WDQ.bigWig bigWig (minus strand signal of all reads) 90.5 MB
ENCFF263EMJ.bigWig bigWig (plus strand signal of unique reads) 78.3 MB
ENCFF287BIZ.bigWig bigWig (plus strand signal of unique reads) 73.1 MB
ENCFF291NZH.bigWig bigWig (plus strand signal of unique reads) 65.1 MB
ENCFF309NOR.tar tar (differential splicing quantifications) 15.0 MB
ENCFF312EDI.bigWig bigWig (plus strand signal of unique reads) 78.3 MB
ENCFF315PVH.tsv tsv (transcript quantifications) 29.8 MB
ENCFF318DME.bigWig bigWig (minus strand signal of unique reads) 68.4 MB
ENCFF332TYK.bigWig bigWig (minus strand signal of unique reads) 80.6 MB
ENCFF351BAY.tsv tsv (gene quantifications) 10.4 MB
ENCFF352LHF.bigWig bigWig (plus strand signal of all reads) 88.6 MB
ENCFF406BTV.tsv tsv (gene quantifications) 10.4 MB
ENCFF412CIH.bam bam (transcriptome alignments) 5.4 GB
ENCFF415CRV.bigWig bigWig (minus strand signal of all reads) 73.3 MB
ENCFF421HWX.bigWig bigWig (plus strand signal of unique reads) 82.1 MB
ENCFF428MDH.bigWig bigWig (minus strand signal of all reads) 92.1 MB
ENCFF439WZO.bigWig bigWig (minus strand signal of unique reads) 80.4 MB
ENCFF460CZF.bam bam (alignments) 4.5 GB
ENCFF464CSL.bam bam (transcriptome alignments) 5.4 GB
ENCFF468GAQ.bigWig bigWig (plus strand signal of all reads) 91.6 MB
ENCFF489AJL.bigWig bigWig (minus strand signal of unique reads) 63.2 MB
ENCFF493BAT.tar tar (differential splicing quantifications) 3.6 MB
ENCFF509ARD.bigWig bigWig (plus strand signal of unique reads) 78.4 MB
ENCFF517IEI.bigWig bigWig (plus strand signal of all reads) 79.0 MB
ENCFF532PJQ.bigWig bigWig (minus strand signal of all reads) 78.0 MB
ENCFF553CNE.bigWig bigWig (plus strand signal of all reads) 88.6 MB
ENCFF558LGO.bam bam (alignments) 4.4 GB
ENCFF559DCV.bam bam (alignments) 5.2 GB
ENCFF593ICV.bam bam (alignments) 5.4 GB
ENCFF642LGE.bam bam (alignments) 4.4 GB
ENCFF651PQK.bigWig bigWig (minus strand signal of unique reads) 67.8 MB
ENCFF659HES.bigWig bigWig (minus strand signal of all reads) 69.3 MB
ENCFF671SXB.tsv tsv (transcript quantifications) 24.9 MB
ENCFF672NPU.fastq fastq (reads) 2.8 GB
ENCFF696LYM.bam bam (alignments) 4.4 GB
ENCFF697BTQ.tsv tsv (transcript quantifications) 25.3 MB
ENCFF700VYC.bigWig bigWig (plus strand signal of all reads) 74.4 MB
ENCFF722LES.tsv tsv (differential expression quantifications) 5.5 MB
ENCFF727MMD.bigWig bigWig (plus strand signal of all reads) 76.1 MB
ENCFF730QZD.tsv tsv (transcript quantifications) 27.4 MB
ENCFF733AHT.bam bam (transcriptome alignments) 5.5 GB
ENCFF741PVS.bigWig bigWig (plus strand signal of unique reads) 81.6 MB
ENCFF746AKD.bam bam (transcriptome alignments) 5.4 GB
ENCFF746FHN.bigWig bigWig (minus strand signal of unique reads) 72.8 MB
ENCFF759BLU.bigWig bigWig (minus strand signal of all reads) 74.6 MB
ENCFF769GGV.tsv tsv (transcript quantifications) 24.9 MB
ENCFF778OAA.bigWig bigWig (plus strand signal of all reads) 93.1 MB
ENCFF808XZL.bam bam (transcriptome alignments) 6.1 GB
ENCFF818XFJ.tsv tsv (gene quantifications) 9.1 MB
ENCFF822TJE.bam bam (alignments) 4.5 GB
ENCFF829QBO.bam bam (alignments) 4.4 GB
ENCFF837JOT.bigWig bigWig (minus strand signal of unique reads) 76.7 MB
ENCFF867JUL.tsv tsv (transcript quantifications) 29.8 MB
ENCFF876FSX.bam bam (transcriptome alignments) 6.1 GB
ENCFF891SES.tsv tsv (differential expression quantifications) 1.6 MB
ENCFF913DKK.bigWig bigWig (plus strand signal of unique reads) 70.3 MB
ENCFF927NFR.bigWig bigWig (minus strand signal of unique reads) 76.7 MB
ENCFF943DZL.bigWig bigWig (plus strand signal of all reads) 74.1 MB
ENCFF954XSF.bigWig bigWig (minus strand signal of all reads) 92.0 MB
ENCFF959DSF.fastq fastq (reads) 2.8 GB
ENCFF960DSZ.fastq fastq (reads) 2.8 GB
ENCFF961TIQ.tsv tsv (transcript quantifications) 25.3 MB
ENCFF972TOM.bam bam (alignments) 5.3 GB
ENCFF973EJH.tsv tsv (differential expression quantifications) 4.3 MB
ENCFF983NEA.bigWig bigWig (minus strand signal of unique reads) 67.1 MB
ENCFF986RDV.tsv tsv (differential expression quantifications) 2.0 MB
ENCFF991ANB.bigWig bigWig (minus strand signal of all reads) 72.7 MB
ENCSR438KWZ ENCSR · via encode_api

eCLIP experiment on K562 against ILF3

Homo sapiens

36 data files
FileTypeSize
ENCFF026RUN.bigBed bigBed (peaks) 4.8 MB
ENCFF040WMA.bigBed bigBed (peaks) 1.9 MB
ENCFF062BOK.bigWig bigWig (minus strand signal of unique reads) 27.0 MB
ENCFF098RFI.bam bam (alignments) 655.7 MB
ENCFF244WAP.bigWig bigWig (plus strand signal of unique reads) 28.5 MB
ENCFF256BBJ.bed bed (peaks) 571.2 KB
ENCFF271DXJ.bigWig bigWig (minus strand signal of unique reads) 30.2 MB
ENCFF302RDD.bigBed bigBed (peaks) 4.8 MB
ENCFF353RQP.bed bed (peaks) 2.6 MB
ENCFF370GDB.bed bed (peaks) 63.3 KB
ENCFF379UOT.bigBed bigBed (peaks) 1.7 MB
ENCFF385MJU.bed bed (peaks) 63.0 KB
ENCFF412NAX.fastq fastq (reads) 444.8 MB
ENCFF415JAG.bam bam (alignments) 567.4 MB
ENCFF417LIC.bigBed bigBed (peaks) 5.5 MB
ENCFF526EKC.fastq fastq (reads) 466.4 MB
ENCFF566ACZ.bigBed bigBed (peaks) 572.4 KB
ENCFF585YOO.fastq fastq (reads) 428.6 MB
ENCFF587ENP.bigWig bigWig (minus strand signal of unique reads) 27.2 MB
ENCFF591IKM.bed bed (peaks) 178.5 KB
ENCFF599CNJ.bigBed bigBed (peaks) 1.1 MB
ENCFF623LPT.bed bed (peaks) 3.0 MB
ENCFF635JLZ.bigWig bigWig (plus strand signal of unique reads) 28.3 MB
ENCFF654XEU.bigBed bigBed (peaks) 5.4 MB
ENCFF670QMD.bed bed (peaks) 214.5 KB
ENCFF676EJB.bigWig bigWig (plus strand signal of unique reads) 31.7 MB
ENCFF814ZTD.bigWig bigWig (minus strand signal of unique reads) 30.0 MB
ENCFF821QFO.bed bed (peaks) 2.6 MB
ENCFF824RQD.fastq fastq (reads) 484.3 MB
ENCFF831OQK.bigWig bigWig (plus strand signal of unique reads) 31.5 MB
ENCFF857MJR.bed bed (peaks) 3.0 MB
ENCFF889XJU.bam bam (alignments) 562.2 MB
ENCFF905QUI.bigBed bigBed (peaks) 499.2 KB
ENCFF942IEZ.bigBed bigBed (peaks) 1.2 MB
ENCFF958RKH.bam bam (alignments) 661.9 MB
ENCFF996VIT.bed bed (peaks) 485.1 KB
ENCSR894MDU ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) mock pulldown control experiment of PUF60

1 data file
FileTypeSize
ENCFF147YOV.fastq fastq (reads) 391.8 MB
ENCSR187FJB ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) input control experiment of SRSF10

1 data file
FileTypeSize
ENCFF532AHD.fastq fastq (reads) 653.4 MB
ENCSR000YYN ENCSR · via encode_api

RNA-seq on K562 cells treated with an shRNA knockdown against AKAP8. (AKAP8_BGKLV32)

Homo sapiens

92 data files
FileTypeSize
ENCFF011EHS.bigWig bigWig (plus strand signal of all reads) 97.9 MB
ENCFF027OQA.bigWig bigWig (minus strand signal of unique reads) 96.2 MB
ENCFF041WAP.tsv tsv (transcript quantifications) 25.4 MB
ENCFF043JWZ.bigWig bigWig (plus strand signal of unique reads) 98.5 MB
ENCFF050GEL.bigWig bigWig (minus strand signal of unique reads) 98.4 MB
ENCFF054FTA.tsv tsv (gene quantifications) 10.4 MB
ENCFF058ECU.bam bam (transcriptome alignments) 7.5 GB
ENCFF065KHB.bam bam (alignments) 5.3 GB
ENCFF097SNN.fastq fastq (reads) 3.5 GB
ENCFF101VVJ.bigWig bigWig (minus strand signal of all reads) 99.4 MB
ENCFF117QQI.bigWig bigWig (minus strand signal of all reads) 108.3 MB
ENCFF129TDB.bigWig bigWig (minus strand signal of all reads) 94.5 MB
ENCFF144UOW.bigWig bigWig (plus strand signal of unique reads) 93.1 MB
ENCFF155HRV.bigWig bigWig (plus strand signal of all reads) 98.7 MB
ENCFF157FAV.bigWig bigWig (plus strand signal of all reads) 111.9 MB
ENCFF162WZU.bigWig bigWig (plus strand signal of all reads) 113.3 MB
ENCFF168XIN.fastq fastq (reads) 3.5 GB
ENCFF169TCT.tsv tsv (transcript quantifications) 25.4 MB
ENCFF175UDT.tsv tsv (transcript quantifications) 29.9 MB
ENCFF203CXR.bigWig bigWig (plus strand signal of all reads) 96.9 MB
ENCFF203OFV.bam bam (alignments) 6.5 GB
ENCFF225SHK.bam bam (transcriptome alignments) 8.6 GB
ENCFF227MLV.bigWig bigWig (minus strand signal of all reads) 97.2 MB
ENCFF237BBL.bam bam (alignments) 5.3 GB
ENCFF237FOT.bigWig bigWig (minus strand signal of unique reads) 88.3 MB
ENCFF239WHY.bigWig bigWig (plus strand signal of all reads) 110.1 MB
ENCFF244FEM.bigWig bigWig (plus strand signal of unique reads) 93.4 MB
ENCFF259FFM.bam bam (transcriptome alignments) 7.5 GB
ENCFF267CJX.tsv tsv (gene quantifications) 9.1 MB
ENCFF293OKR.bigWig bigWig (minus strand signal of unique reads) 95.3 MB
ENCFF297LTR.bigWig bigWig (plus strand signal of unique reads) 91.3 MB
ENCFF303IRW.tsv tsv (transcript quantifications) 27.2 MB
ENCFF304WHS.bigWig bigWig (plus strand signal of all reads) 96.6 MB
ENCFF334BIP.tsv tsv (transcript quantifications) 27.5 MB
ENCFF338MWP.tsv tsv (gene quantifications) 9.1 MB
ENCFF356FCA.bigWig bigWig (plus strand signal of all reads) 101.6 MB
ENCFF356TEQ.bam bam (transcriptome alignments) 8.4 GB
ENCFF380ISQ.bigWig bigWig (plus strand signal of all reads) 109.1 MB
ENCFF388NWU.bigWig bigWig (plus strand signal of all reads) 109.8 MB
ENCFF390KVK.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF411MFK.bam bam (alignments) 6.7 GB
ENCFF423FQX.bam bam (alignments) 6.7 GB
ENCFF426NIQ.tar tar (differential splicing quantifications) 5.3 MB
ENCFF450ZUA.bigWig bigWig (minus strand signal of unique reads) 90.5 MB
ENCFF465JAC.bam bam (alignments) 5.4 GB
ENCFF468HFW.bigWig bigWig (minus strand signal of unique reads) 96.5 MB
ENCFF470QIC.tsv tsv (differential expression quantifications) 4.4 MB
ENCFF503JMW.bam bam (alignments) 6.7 GB
ENCFF517EWL.bigWig bigWig (plus strand signal of unique reads) 100.7 MB
ENCFF535BEN.bigWig bigWig (plus strand signal of unique reads) 92.1 MB
ENCFF537IQR.bam bam (alignments) 6.7 GB
ENCFF548EKC.bigWig bigWig (minus strand signal of unique reads) 89.5 MB
ENCFF560XPH.fastq fastq (reads) 3.5 GB
ENCFF571WZI.bam bam (alignments) 5.4 GB
ENCFF583BUR.bigWig bigWig (minus strand signal of unique reads) 98.2 MB
ENCFF599WTW.bigWig bigWig (minus strand signal of all reads) 97.0 MB
ENCFF640HPA.bam bam (alignments) 5.3 GB
ENCFF649HDH.bigWig bigWig (minus strand signal of all reads) 111.5 MB
ENCFF652MKH.bigWig bigWig (minus strand signal of all reads) 95.8 MB
ENCFF671YQM.bam bam (transcriptome alignments) 7.6 GB
ENCFF676JWB.bigWig bigWig (plus strand signal of unique reads) 99.1 MB
ENCFF677GGI.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF687EZL.bam bam (alignments) 5.3 GB
ENCFF711JDO.bigWig bigWig (plus strand signal of all reads) 99.3 MB
ENCFF713XST.bigWig bigWig (plus strand signal of unique reads) 101.0 MB
ENCFF742ALH.bigWig bigWig (minus strand signal of all reads) 110.0 MB
ENCFF748JYH.tsv tsv (gene quantifications) 9.5 MB
ENCFF749OSF.tsv tsv (transcript quantifications) 24.9 MB
ENCFF769XKN.bigWig bigWig (minus strand signal of unique reads) 98.2 MB
ENCFF803ZXN.tsv tsv (transcript quantifications) 24.9 MB
ENCFF816ZWJ.bigWig bigWig (plus strand signal of unique reads) 91.0 MB
ENCFF822RJM.bigWig bigWig (minus strand signal of all reads) 107.5 MB
ENCFF829QWX.tar tar (differential splicing quantifications) 4.2 MB
ENCFF832YUF.tsv tsv (gene quantifications) 10.4 MB
ENCFF845LOW.bigWig bigWig (plus strand signal of unique reads) 97.6 MB
ENCFF851MLQ.tsv tsv (transcript quantifications) 29.9 MB
ENCFF884OTP.tsv tsv (gene quantifications) 9.5 MB
ENCFF888NZK.bigWig bigWig (plus strand signal of unique reads) 101.0 MB
ENCFF894MVS.bigWig bigWig (minus strand signal of unique reads) 91.1 MB
ENCFF898ZFH.bigWig bigWig (plus strand signal of all reads) 113.3 MB
ENCFF900VIC.bigWig bigWig (minus strand signal of all reads) 108.5 MB
ENCFF902ESJ.bigWig bigWig (plus strand signal of unique reads) 88.8 MB
ENCFF905BVB.bam bam (alignments) 6.4 GB
ENCFF911LNR.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF924KXM.bigWig bigWig (minus strand signal of all reads) 111.5 MB
ENCFF931FKH.bam bam (transcriptome alignments) 7.4 GB
ENCFF943VUO.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF951YBZ.fastq fastq (reads) 3.5 GB
ENCFF964OFF.bigWig bigWig (minus strand signal of unique reads) 89.2 MB
ENCFF970HFK.bigWig bigWig (minus strand signal of all reads) 95.3 MB
ENCFF973BZW.tar tar (differential splicing quantifications) 17.5 MB
ENCFF982IWA.bigWig bigWig (minus strand signal of unique reads) 86.3 MB
ENCSR165BCF ENCSR · via encode_api

RNA-seq on K562 cells treated with an shRNA knockdown against WRN. (WRN_BGKLV38)

Homo sapiens

92 data files
FileTypeSize
ENCFF022XAQ.bigWig bigWig (minus strand signal of unique reads) 104.5 MB
ENCFF059WTI.bigWig bigWig (minus strand signal of unique reads) 112.4 MB
ENCFF063EWE.fastq fastq (reads) 3.8 GB
ENCFF071ZAE.bigWig bigWig (plus strand signal of unique reads) 119.8 MB
ENCFF080UMI.tsv tsv (transcript quantifications) 29.8 MB
ENCFF086OMB.tsv tsv (gene quantifications) 9.5 MB
ENCFF091BEU.bam bam (transcriptome alignments) 8.2 GB
ENCFF099KYQ.bam bam (alignments) 5.5 GB
ENCFF106BWX.bigWig bigWig (plus strand signal of unique reads) 117.6 MB
ENCFF114EQS.bigWig bigWig (plus strand signal of all reads) 118.0 MB
ENCFF119FBS.tsv tsv (gene quantifications) 10.4 MB
ENCFF127CFR.bam bam (transcriptome alignments) 9.3 GB
ENCFF129WNI.bam bam (alignments) 5.6 GB
ENCFF131OBP.bigWig bigWig (minus strand signal of all reads) 117.8 MB
ENCFF136QOP.bam bam (alignments) 7.8 GB
ENCFF140GCK.bam bam (transcriptome alignments) 9.4 GB
ENCFF155HNE.tsv tsv (differential expression quantifications) 2.0 MB
ENCFF161AKD.bigWig bigWig (minus strand signal of unique reads) 107.8 MB
ENCFF164IKP.tar tar (differential splicing quantifications) 18.8 MB
ENCFF172RDH.bam bam (transcriptome alignments) 9.2 GB
ENCFF187NWM.bam bam (alignments) 7.8 GB
ENCFF189PMW.bigWig bigWig (plus strand signal of unique reads) 126.0 MB
ENCFF192GNN.bigWig bigWig (minus strand signal of all reads) 127.4 MB
ENCFF204HUE.tar tar (differential splicing quantifications) 4.8 MB
ENCFF223WJB.tsv tsv (transcript quantifications) 25.3 MB
ENCFF258SNE.bigWig bigWig (minus strand signal of unique reads) 123.2 MB
ENCFF273YOL.bam bam (transcriptome alignments) 10.6 GB
ENCFF282OZW.bigWig bigWig (minus strand signal of unique reads) 114.0 MB
ENCFF291PQX.bigWig bigWig (plus strand signal of unique reads) 117.9 MB
ENCFF301EVC.tsv tsv (transcript quantifications) 27.5 MB
ENCFF338ERI.bam bam (alignments) 7.0 GB
ENCFF338FNP.tsv tsv (gene quantifications) 9.1 MB
ENCFF354ESP.bam bam (alignments) 7.5 GB
ENCFF370YNH.tsv tsv (transcript quantifications) 27.5 MB
ENCFF376BQI.bigWig bigWig (minus strand signal of all reads) 116.3 MB
ENCFF386YBH.bigWig bigWig (plus strand signal of all reads) 132.2 MB
ENCFF399CXQ.bigWig bigWig (minus strand signal of all reads) 130.4 MB
ENCFF399GKN.bam bam (transcriptome alignments) 8.1 GB
ENCFF399LRS.bam bam (alignments) 5.5 GB
ENCFF403JNJ.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF404MFY.bigWig bigWig (plus strand signal of unique reads) 117.8 MB
ENCFF406QFV.bam bam (alignments) 6.7 GB
ENCFF438TFZ.bigWig bigWig (minus strand signal of unique reads) 107.6 MB
ENCFF467IYC.bam bam (alignments) 6.2 GB
ENCFF472LBV.bigWig bigWig (minus strand signal of unique reads) 115.1 MB
ENCFF479YFU.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF487APM.bigWig bigWig (minus strand signal of all reads) 123.6 MB
ENCFF490GIG.fastq fastq (reads) 4.1 GB
ENCFF495IWA.tsv tsv (differential expression quantifications) 4.4 MB
ENCFF535GTP.bigWig bigWig (plus strand signal of all reads) 132.2 MB
ENCFF541FSO.tsv tsv (differential expression quantifications) 5.5 MB
ENCFF550TJQ.tsv tsv (transcript quantifications) 29.9 MB
ENCFF562UWB.bigWig bigWig (minus strand signal of all reads) 130.4 MB
ENCFF573JES.bigWig bigWig (plus strand signal of all reads) 137.9 MB
ENCFF593SNU.bam bam (alignments) 7.0 GB
ENCFF605ZKQ.bigWig bigWig (plus strand signal of unique reads) 115.6 MB
ENCFF609LOH.bigWig bigWig (minus strand signal of all reads) 139.6 MB
ENCFF629MUA.bigWig bigWig (minus strand signal of unique reads) 122.2 MB
ENCFF637WDK.bigWig bigWig (minus strand signal of all reads) 124.9 MB
ENCFF645RPK.bigWig bigWig (plus strand signal of all reads) 141.3 MB
ENCFF655BPJ.tsv tsv (transcript quantifications) 24.9 MB
ENCFF670IYQ.fastq fastq (reads) 3.7 GB
ENCFF673CDK.bigWig bigWig (minus strand signal of all reads) 128.0 MB
ENCFF685SES.tsv tsv (transcript quantifications) 24.9 MB
ENCFF699WMK.tsv tsv (gene quantifications) 9.1 MB
ENCFF708NYF.bigWig bigWig (plus strand signal of unique reads) 110.4 MB
ENCFF710BWH.tar tar (differential splicing quantifications) 6.2 MB
ENCFF711WPK.bigWig bigWig (plus strand signal of all reads) 115.9 MB
ENCFF715MIN.bigWig bigWig (plus strand signal of unique reads) 126.0 MB
ENCFF719SGN.bigWig bigWig (minus strand signal of unique reads) 115.0 MB
ENCFF720VZR.bigWig bigWig (plus strand signal of all reads) 129.6 MB
ENCFF733GCF.bigWig bigWig (plus strand signal of all reads) 126.6 MB
ENCFF753CGN.bigWig bigWig (minus strand signal of all reads) 113.7 MB
ENCFF753ZXL.bam bam (alignments) 6.1 GB
ENCFF787ZSH.bigWig bigWig (plus strand signal of unique reads) 107.7 MB
ENCFF788KTX.bigWig bigWig (plus strand signal of all reads) 141.3 MB
ENCFF828KJQ.tsv tsv (gene quantifications) 9.5 MB
ENCFF829QKL.bigWig bigWig (plus strand signal of all reads) 125.9 MB
ENCFF852CMI.bigWig bigWig (plus strand signal of all reads) 129.9 MB
ENCFF864ZFK.bam bam (alignments) 6.1 GB
ENCFF910DAI.tsv tsv (gene quantifications) 10.4 MB
ENCFF912COH.bigWig bigWig (plus strand signal of unique reads) 117.1 MB
ENCFF913YPK.tsv tsv (transcript quantifications) 25.3 MB
ENCFF921EQX.bigWig bigWig (plus strand signal of unique reads) 124.9 MB
ENCFF927AAV.bigWig bigWig (plus strand signal of all reads) 120.0 MB
ENCFF931PKC.fastq fastq (reads) 4.2 GB
ENCFF932XJB.bigWig bigWig (minus strand signal of all reads) 136.1 MB
ENCFF956QDZ.bigWig bigWig (minus strand signal of all reads) 139.6 MB
ENCFF957QYL.bigWig bigWig (plus strand signal of unique reads) 110.6 MB
ENCFF975OQM.bigWig bigWig (minus strand signal of unique reads) 122.9 MB
ENCFF994AAS.bigWig bigWig (minus strand signal of unique reads) 114.9 MB
ENCFF995EXG.bigWig bigWig (minus strand signal of unique reads) 116.8 MB
ENCSR362XMY ENCSR · via encode_api

RNA-seq on K562 cells treated with an shRNA knockdown against UBE2L3. (UBE2L3-BGKLV25)

Homo sapiens

92 data files
FileTypeSize
ENCFF015COY.bigWig bigWig (minus strand signal of unique reads) 162.5 MB
ENCFF027CSS.tsv tsv (gene quantifications) 9.5 MB
ENCFF043FRI.bigWig bigWig (minus strand signal of all reads) 196.3 MB
ENCFF055YNA.bam bam (alignments) 5.6 GB
ENCFF060HQD.bigWig bigWig (minus strand signal of unique reads) 175.0 MB
ENCFF080LXL.tar tar (differential splicing quantifications) 7.3 MB
ENCFF086XTC.bam bam (alignments) 5.7 GB
ENCFF092OOP.bigWig bigWig (plus strand signal of all reads) 183.7 MB
ENCFF103HQC.bigWig bigWig (plus strand signal of unique reads) 179.4 MB
ENCFF131BDB.bigWig bigWig (minus strand signal of unique reads) 174.6 MB
ENCFF139WRA.bam bam (alignments) 13.7 GB
ENCFF143ENO.bam bam (transcriptome alignments) 8.9 GB
ENCFF143WNK.tar tar (differential splicing quantifications) 18.9 MB
ENCFF146OWK.bigWig bigWig (minus strand signal of all reads) 196.3 MB
ENCFF157LSQ.bigWig bigWig (plus strand signal of all reads) 136.9 MB
ENCFF161RCQ.bigWig bigWig (minus strand signal of unique reads) 175.2 MB
ENCFF218KMI.bam bam (alignments) 10.9 GB
ENCFF229RPL.bigWig bigWig (minus strand signal of all reads) 176.9 MB
ENCFF257FLU.bam bam (alignments) 6.9 GB
ENCFF257QKV.bam bam (alignments) 11.0 GB
ENCFF266CVT.bigWig bigWig (plus strand signal of all reads) 127.9 MB
ENCFF271WKC.tsv tsv (gene quantifications) 9.1 MB
ENCFF285PSX.tsv tsv (transcript quantifications) 25.4 MB
ENCFF293ZKO.fastq fastq (reads) 4.0 GB
ENCFF324LII.bigWig bigWig (plus strand signal of all reads) 180.5 MB
ENCFF357OAP.bigWig bigWig (minus strand signal of unique reads) 119.8 MB
ENCFF358RUE.tsv tsv (transcript quantifications) 27.5 MB
ENCFF387GOK.bigWig bigWig (plus strand signal of all reads) 136.6 MB
ENCFF403HGN.tar tar (differential splicing quantifications) 6.1 MB
ENCFF409WBC.bigWig bigWig (plus strand signal of all reads) 136.8 MB
ENCFF411MEA.bigWig bigWig (plus strand signal of unique reads) 179.2 MB
ENCFF417TDP.bigWig bigWig (minus strand signal of all reads) 125.5 MB
ENCFF435QGH.bam bam (transcriptome alignments) 19.4 GB
ENCFF437ENF.bigWig bigWig (minus strand signal of all reads) 135.1 MB
ENCFF441IBI.bam bam (alignments) 13.3 GB
ENCFF445WEU.tsv tsv (transcript quantifications) 27.6 MB
ENCFF446ZHB.bigWig bigWig (plus strand signal of unique reads) 170.8 MB
ENCFF450RGU.tsv tsv (differential expression quantifications) 1.8 MB
ENCFF470YUK.bigWig bigWig (minus strand signal of unique reads) 110.7 MB
ENCFF477CWA.tsv tsv (gene quantifications) 10.4 MB
ENCFF494YCT.bam bam (alignments) 7.0 GB
ENCFF497WXC.tsv tsv (transcript quantifications) 25.0 MB
ENCFF503GIP.bigWig bigWig (plus strand signal of unique reads) 169.6 MB
ENCFF517JBG.bigWig bigWig (plus strand signal of all reads) 195.9 MB
ENCFF552DDK.tsv tsv (gene quantifications) 9.5 MB
ENCFF552FAB.tsv tsv (differential expression quantifications) 4.5 MB
ENCFF565OOM.bigWig bigWig (minus strand signal of all reads) 193.1 MB
ENCFF566CJR.fastq fastq (reads) 7.7 GB
ENCFF568WSU.bigWig bigWig (plus strand signal of unique reads) 179.3 MB
ENCFF571EFQ.bigWig bigWig (plus strand signal of unique reads) 117.5 MB
ENCFF637SPA.bam bam (alignments) 13.7 GB
ENCFF651TTZ.tsv tsv (transcript quantifications) 25.3 MB
ENCFF654LPQ.tsv tsv (differential expression quantifications) 5.7 MB
ENCFF659JFA.bam bam (alignments) 10.9 GB
ENCFF659OTC.bigWig bigWig (minus strand signal of all reads) 121.1 MB
ENCFF670VDT.tsv tsv (differential expression quantifications) 2.8 MB
ENCFF681SWX.bigWig bigWig (plus strand signal of all reads) 125.5 MB
ENCFF684EMJ.bigWig bigWig (minus strand signal of all reads) 123.7 MB
ENCFF741GPG.tsv tsv (transcript quantifications) 24.9 MB
ENCFF751DCK.bigWig bigWig (plus strand signal of unique reads) 123.0 MB
ENCFF751HCG.bigWig bigWig (plus strand signal of unique reads) 167.0 MB
ENCFF763VTG.bigWig bigWig (plus strand signal of all reads) 180.9 MB
ENCFF769KFC.bigWig bigWig (plus strand signal of all reads) 123.5 MB
ENCFF778HHH.bigWig bigWig (minus strand signal of all reads) 178.3 MB
ENCFF803NYA.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF810QBT.bigWig bigWig (plus strand signal of unique reads) 123.8 MB
ENCFF814UFH.bigWig bigWig (minus strand signal of all reads) 180.3 MB
ENCFF820PDF.bigWig bigWig (plus strand signal of unique reads) 123.9 MB
ENCFF823SZV.tsv tsv (gene quantifications) 9.1 MB
ENCFF834VKA.bam bam (transcriptome alignments) 10.3 GB
ENCFF836NND.bigWig bigWig (minus strand signal of unique reads) 165.7 MB
ENCFF871BRO.tsv tsv (gene quantifications) 10.4 MB
ENCFF873RCW.bam bam (alignments) 7.0 GB
ENCFF875LAD.bam bam (transcriptome alignments) 17.0 GB
ENCFF879KPX.bigWig bigWig (minus strand signal of all reads) 135.1 MB
ENCFF888LON.bigWig bigWig (plus strand signal of all reads) 199.0 MB
ENCFF889TEV.bigWig bigWig (plus strand signal of unique reads) 113.8 MB
ENCFF891TPJ.bigWig bigWig (minus strand signal of unique reads) 120.9 MB
ENCFF899QRS.bigWig bigWig (minus strand signal of unique reads) 114.4 MB
ENCFF906VYH.tsv tsv (transcript quantifications) 29.9 MB
ENCFF907VSL.fastq fastq (reads) 3.9 GB
ENCFF918ZIL.bam bam (alignments) 5.6 GB
ENCFF920HRK.bigWig bigWig (minus strand signal of unique reads) 121.0 MB
ENCFF924FIY.bigWig bigWig (minus strand signal of unique reads) 166.4 MB
ENCFF924GIP.bigWig bigWig (plus strand signal of all reads) 199.0 MB
ENCFF935MFR.fastq fastq (reads) 7.6 GB
ENCFF940AEW.bigWig bigWig (plus strand signal of unique reads) 117.6 MB
ENCFF946CDM.bam bam (transcriptome alignments) 16.8 GB
ENCFF947ZGM.tsv tsv (transcript quantifications) 29.9 MB
ENCFF976RKB.bigWig bigWig (minus strand signal of all reads) 134.7 MB
ENCFF997NIZ.bam bam (transcriptome alignments) 9.0 GB
ENCFF997SQB.bigWig bigWig (minus strand signal of unique reads) 115.0 MB
ENCSR681SMT ENCSR · via encode_api

shRNA knockdown against PHF6 in HepG2 cells followed by RNA-seq. (PHF6_BGHLV18)

Homo sapiens

92 data files
FileTypeSize
ENCFF012KRS.bigWig bigWig (minus strand signal of unique reads) 62.0 MB
ENCFF034TYA.bigWig bigWig (minus strand signal of all reads) 79.5 MB
ENCFF039VBF.bam bam (alignments) 3.7 GB
ENCFF046FKE.tar tar (differential splicing quantifications) 14.9 MB
ENCFF063WCN.bigWig bigWig (plus strand signal of unique reads) 67.8 MB
ENCFF069DWF.bigWig bigWig (minus strand signal of all reads) 72.4 MB
ENCFF072OEP.bigWig bigWig (minus strand signal of all reads) 73.6 MB
ENCFF091KPJ.bam bam (alignments) 3.0 GB
ENCFF095FKD.tsv tsv (gene quantifications) 9.1 MB
ENCFF116BWC.tsv tsv (gene quantifications) 10.4 MB
ENCFF149YEF.bigWig bigWig (minus strand signal of unique reads) 62.0 MB
ENCFF175PGN.bigWig bigWig (minus strand signal of all reads) 65.7 MB
ENCFF181ZAT.bigWig bigWig (plus strand signal of all reads) 73.5 MB
ENCFF211KJY.bam bam (transcriptome alignments) 5.8 GB
ENCFF220JID.bigWig bigWig (plus strand signal of all reads) 68.4 MB
ENCFF223OQN.bam bam (transcriptome alignments) 5.8 GB
ENCFF229WSC.bam bam (alignments) 3.0 GB
ENCFF234VJT.tsv tsv (transcript quantifications) 25.3 MB
ENCFF235RUV.bam bam (alignments) 3.7 GB
ENCFF247VPQ.bigWig bigWig (plus strand signal of all reads) 73.9 MB
ENCFF273GHC.bigWig bigWig (plus strand signal of unique reads) 73.7 MB
ENCFF283IVL.bigWig bigWig (plus strand signal of all reads) 72.3 MB
ENCFF284RKZ.tsv tsv (differential expression quantifications) 2.8 MB
ENCFF297BTK.bam bam (transcriptome alignments) 4.5 GB
ENCFF306MQU.bam bam (alignments) 3.6 GB
ENCFF326XVG.bigWig bigWig (plus strand signal of all reads) 80.7 MB
ENCFF331KDS.bam bam (alignments) 4.6 GB
ENCFF357UJY.bam bam (alignments) 4.6 GB
ENCFF359QDQ.bigWig bigWig (plus strand signal of all reads) 80.0 MB
ENCFF369AGA.bigWig bigWig (minus strand signal of all reads) 79.5 MB
ENCFF373DUO.tsv tsv (transcript quantifications) 24.9 MB
ENCFF385VSX.bigWig bigWig (minus strand signal of unique reads) 72.0 MB
ENCFF387VAN.tsv tsv (gene quantifications) 9.4 MB
ENCFF394BXQ.bigWig bigWig (plus strand signal of unique reads) 63.4 MB
ENCFF401PKM.bigWig bigWig (minus strand signal of unique reads) 68.0 MB
ENCFF405RBX.bigWig bigWig (plus strand signal of all reads) 74.5 MB
ENCFF407IVG.fastq fastq (reads) 2.0 GB
ENCFF421IAK.bam bam (alignments) 3.7 GB
ENCFF439IBN.tsv tsv (transcript quantifications) 29.8 MB
ENCFF445CSH.bigWig bigWig (plus strand signal of unique reads) 73.2 MB
ENCFF459ZGC.bigWig bigWig (plus strand signal of unique reads) 63.2 MB
ENCFF488RGZ.tsv tsv (differential expression quantifications) 5.5 MB
ENCFF492RGT.bigWig bigWig (minus strand signal of unique reads) 71.5 MB
ENCFF492RXP.tsv tsv (gene quantifications) 9.1 MB
ENCFF505MPT.bigWig bigWig (minus strand signal of unique reads) 66.2 MB
ENCFF509SLC.bam bam (alignments) 3.7 GB
ENCFF514FEJ.bigWig bigWig (plus strand signal of unique reads) 67.6 MB
ENCFF526BGB.tsv tsv (gene quantifications) 9.4 MB
ENCFF533XPL.tsv tsv (gene quantifications) 10.4 MB
ENCFF547FWK.fastq fastq (reads) 2.5 GB
ENCFF549TVE.fastq fastq (reads) 2.5 GB
ENCFF552GTW.bigWig bigWig (minus strand signal of all reads) 67.4 MB
ENCFF597RQE.bigWig bigWig (minus strand signal of all reads) 79.0 MB
ENCFF610OOH.bam bam (alignments) 3.1 GB
ENCFF612YWO.bigWig bigWig (plus strand signal of unique reads) 67.6 MB
ENCFF633QNM.bigWig bigWig (minus strand signal of unique reads) 59.0 MB
ENCFF644CBF.bigWig bigWig (plus strand signal of all reads) 66.5 MB
ENCFF648HBM.bigWig bigWig (plus strand signal of all reads) 74.5 MB
ENCFF650INC.tsv tsv (differential expression quantifications) 1.8 MB
ENCFF650TJS.bigWig bigWig (plus strand signal of all reads) 63.9 MB
ENCFF655ZVW.bigWig bigWig (minus strand signal of all reads) 73.6 MB
ENCFF656DPG.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF667TEI.bam bam (transcriptome alignments) 6.6 GB
ENCFF694IFO.bigWig bigWig (minus strand signal of all reads) 62.8 MB
ENCFF719WWN.bigWig bigWig (plus strand signal of unique reads) 72.9 MB
ENCFF751ZUB.bigWig bigWig (plus strand signal of unique reads) 69.6 MB
ENCFF754NKV.bigWig bigWig (minus strand signal of all reads) 73.1 MB
ENCFF771PUB.fastq fastq (reads) 2.0 GB
ENCFF780CDA.tar tar (differential splicing quantifications) 3.5 MB
ENCFF791FMG.bigWig bigWig (minus strand signal of unique reads) 66.2 MB
ENCFF792DOY.bigWig bigWig (minus strand signal of all reads) 71.0 MB
ENCFF819LDG.tsv tsv (transcript quantifications) 27.3 MB
ENCFF821HRH.bigWig bigWig (plus strand signal of unique reads) 68.8 MB
ENCFF825MPI.bigWig bigWig (plus strand signal of unique reads) 67.6 MB
ENCFF840BGG.bigWig bigWig (minus strand signal of unique reads) 66.2 MB
ENCFF852DRB.tsv tsv (transcript quantifications) 27.3 MB
ENCFF858EYL.bam bam (alignments) 4.4 GB
ENCFF871IYV.tar tar (differential splicing quantifications) 3.0 MB
ENCFF880CQM.bigWig bigWig (plus strand signal of unique reads) 60.4 MB
ENCFF893SFE.bam bam (transcriptome alignments) 4.5 GB
ENCFF901AFP.bigWig bigWig (minus strand signal of all reads) 73.5 MB
ENCFF926YDY.tsv tsv (transcript quantifications) 24.9 MB
ENCFF932KRW.tsv tsv (differential expression quantifications) 4.1 MB
ENCFF934ROK.tsv tsv (transcript quantifications) 29.8 MB
ENCFF942ENK.bigWig bigWig (plus strand signal of all reads) 80.7 MB
ENCFF950FXO.tsv tsv (transcript quantifications) 25.3 MB
ENCFF969ONH.bam bam (transcriptome alignments) 5.1 GB
ENCFF974AET.bigWig bigWig (plus strand signal of all reads) 74.7 MB
ENCFF985GHC.bam bam (alignments) 3.8 GB
ENCFF989OJG.bigWig bigWig (minus strand signal of unique reads) 66.1 MB
ENCFF990LVD.bigWig bigWig (minus strand signal of unique reads) 71.3 MB
ENCFF992AVY.bigWig bigWig (minus strand signal of unique reads) 67.4 MB
ENCSR210DML ENCSR · via encode_api

RNA-seq on HepG2 cells treated with an shRNA knockdown against PUM2. (PUM2-BGHLV23)

Homo sapiens

92 data files
FileTypeSize
ENCFF008DJQ.bigWig bigWig (minus strand signal of unique reads) 79.4 MB
ENCFF027IZU.bigWig bigWig (minus strand signal of all reads) 80.8 MB
ENCFF037CNE.fastq fastq (reads) 3.0 GB
ENCFF047IYX.bigWig bigWig (minus strand signal of all reads) 77.6 MB
ENCFF047WCV.bam bam (alignments) 5.4 GB
ENCFF047XSL.bigWig bigWig (plus strand signal of unique reads) 77.6 MB
ENCFF052BSA.bam bam (alignments) 4.7 GB
ENCFF053XGN.bigWig bigWig (minus strand signal of all reads) 80.6 MB
ENCFF057SPW.bam bam (alignments) 5.7 GB
ENCFF068OSO.tsv tsv (transcript quantifications) 24.9 MB
ENCFF074JPA.bigWig bigWig (plus strand signal of all reads) 87.7 MB
ENCFF082IYN.bigWig bigWig (plus strand signal of all reads) 92.1 MB
ENCFF089BHL.tar tar (differential splicing quantifications) 3.7 MB
ENCFF108JRS.bigWig bigWig (minus strand signal of unique reads) 72.9 MB
ENCFF110IZD.bigWig bigWig (minus strand signal of unique reads) 81.6 MB
ENCFF123DMW.fastq fastq (reads) 3.1 GB
ENCFF146SNA.bigWig bigWig (plus strand signal of unique reads) 84.0 MB
ENCFF146TRC.bigWig bigWig (minus strand signal of all reads) 88.5 MB
ENCFF150QNH.tsv tsv (transcript quantifications) 24.9 MB
ENCFF156CVE.bam bam (transcriptome alignments) 7.6 GB
ENCFF156NRP.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF169GTM.bam bam (transcriptome alignments) 6.8 GB
ENCFF181FTC.bigWig bigWig (minus strand signal of all reads) 78.9 MB
ENCFF198YPT.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF204DKA.bigWig bigWig (minus strand signal of unique reads) 79.4 MB
ENCFF215CCF.tsv tsv (transcript quantifications) 29.8 MB
ENCFF219ZVY.bigWig bigWig (minus strand signal of all reads) 90.3 MB
ENCFF227BNP.tsv tsv (differential expression quantifications) 4.5 MB
ENCFF234TGQ.bigWig bigWig (minus strand signal of all reads) 85.9 MB
ENCFF239VRF.bam bam (alignments) 5.5 GB
ENCFF239ZEK.bigWig bigWig (minus strand signal of unique reads) 74.6 MB
ENCFF248OLP.bigWig bigWig (plus strand signal of unique reads) 75.6 MB
ENCFF262TNG.bigWig bigWig (plus strand signal of unique reads) 83.9 MB
ENCFF264NFX.tsv tsv (gene quantifications) 9.1 MB
ENCFF269NJJ.tsv tsv (transcript quantifications) 25.3 MB
ENCFF306FCP.tsv tsv (transcript quantifications) 27.4 MB
ENCFF312AFE.bigWig bigWig (minus strand signal of all reads) 82.1 MB
ENCFF312EMQ.bigWig bigWig (plus strand signal of unique reads) 81.9 MB
ENCFF330CHV.bam bam (alignments) 5.7 GB
ENCFF355JDR.bam bam (transcriptome alignments) 7.3 GB
ENCFF377ABY.tsv tsv (transcript quantifications) 25.3 MB
ENCFF379EGR.tsv tsv (transcript quantifications) 27.4 MB
ENCFF380YLJ.tar tar (differential splicing quantifications) 4.8 MB
ENCFF395ZBF.bigWig bigWig (plus strand signal of all reads) 80.7 MB
ENCFF396WFQ.tsv tsv (differential expression quantifications) 2.0 MB
ENCFF417WLP.bigWig bigWig (plus strand signal of unique reads) 76.7 MB
ENCFF418XVH.tsv tsv (gene quantifications) 10.4 MB
ENCFF440DIB.bigWig bigWig (plus strand signal of unique reads) 83.5 MB
ENCFF441WCP.tsv tsv (transcript quantifications) 29.8 MB
ENCFF450MBE.bigWig bigWig (plus strand signal of all reads) 92.1 MB
ENCFF453NIL.bigWig bigWig (plus strand signal of unique reads) 79.3 MB
ENCFF464WLH.bam bam (alignments) 5.2 GB
ENCFF473FEZ.bam bam (alignments) 4.8 GB
ENCFF476YIR.bam bam (alignments) 4.5 GB
ENCFF491BUV.tar tar (differential splicing quantifications) 17.9 MB
ENCFF495PJJ.bigWig bigWig (minus strand signal of all reads) 78.9 MB
ENCFF547WSA.bam bam (alignments) 4.7 GB
ENCFF548GNM.bigWig bigWig (plus strand signal of all reads) 84.1 MB
ENCFF560LZG.bigWig bigWig (minus strand signal of unique reads) 79.4 MB
ENCFF577FTD.bigWig bigWig (plus strand signal of all reads) 91.9 MB
ENCFF619BPZ.bigWig bigWig (plus strand signal of all reads) 79.6 MB
ENCFF626TNO.fastq fastq (reads) 2.8 GB
ENCFF664HFL.bigWig bigWig (minus strand signal of unique reads) 81.0 MB
ENCFF673CAH.bam bam (alignments) 5.4 GB
ENCFF683FIH.bigWig bigWig (minus strand signal of all reads) 90.1 MB
ENCFF685WOP.bigWig bigWig (plus strand signal of all reads) 90.3 MB
ENCFF687FXQ.bigWig bigWig (plus strand signal of all reads) 82.7 MB
ENCFF773GQF.bigWig bigWig (minus strand signal of all reads) 88.5 MB
ENCFF778JUT.bigWig bigWig (minus strand signal of all reads) 90.3 MB
ENCFF785PNS.tsv tsv (differential expression quantifications) 3.0 MB
ENCFF793CYZ.bigWig bigWig (minus strand signal of unique reads) 76.9 MB
ENCFF795VCU.tsv tsv (gene quantifications) 9.5 MB
ENCFF814XHY.bigWig bigWig (plus strand signal of unique reads) 78.2 MB
ENCFF817LWJ.tsv tsv (gene quantifications) 9.5 MB
ENCFF825ORB.bigWig bigWig (plus strand signal of unique reads) 82.0 MB
ENCFF868QGK.bigWig bigWig (minus strand signal of unique reads) 75.1 MB
ENCFF876HDX.tsv tsv (gene quantifications) 9.1 MB
ENCFF886NEG.bigWig bigWig (plus strand signal of all reads) 82.3 MB
ENCFF891YSK.bam bam (transcriptome alignments) 6.5 GB
ENCFF895DVL.tsv tsv (gene quantifications) 10.4 MB
ENCFF910TXB.bigWig bigWig (plus strand signal of all reads) 80.8 MB
ENCFF916TVA.bam bam (alignments) 4.5 GB
ENCFF918PRA.bigWig bigWig (plus strand signal of unique reads) 81.9 MB
ENCFF918YQM.bigWig bigWig (minus strand signal of unique reads) 76.0 MB
ENCFF932NUZ.bigWig bigWig (plus strand signal of unique reads) 76.9 MB
ENCFF937EGD.bigWig bigWig (minus strand signal of unique reads) 81.5 MB
ENCFF938PLZ.bigWig bigWig (plus strand signal of all reads) 90.4 MB
ENCFF958XZI.fastq fastq (reads) 2.9 GB
ENCFF961ENZ.bigWig bigWig (minus strand signal of unique reads) 74.1 MB
ENCFF973CKC.bam bam (transcriptome alignments) 6.8 GB
ENCFF980HBO.bam bam (transcriptome alignments) 6.5 GB
ENCFF996SJR.bam bam (alignments) 4.6 GB
ENCSR771QMJ ENCSR · via encode_api

shRNA knockdown against GEMIN5 in HepG2 cells followed by RNA-seq. (GEMIN5_BGHLV16)

Homo sapiens

92 data files
FileTypeSize
ENCFF004UVZ.bigWig bigWig (minus strand signal of all reads) 65.1 MB
ENCFF005FQJ.bigWig bigWig (plus strand signal of all reads) 65.1 MB
ENCFF005PIU.tsv tsv (differential expression quantifications) 4.2 MB
ENCFF038WSC.tsv tsv (differential expression quantifications) 2.8 MB
ENCFF041HJO.bigWig bigWig (plus strand signal of unique reads) 68.2 MB
ENCFF045MYU.bam bam (alignments) 4.3 GB
ENCFF052NWN.bigWig bigWig (plus strand signal of all reads) 45.3 MB
ENCFF062MOB.bigWig bigWig (plus strand signal of all reads) 74.5 MB
ENCFF063GHL.tsv tsv (transcript quantifications) 25.2 MB
ENCFF063TJW.bigWig bigWig (minus strand signal of unique reads) 46.9 MB
ENCFF068FFV.bigWig bigWig (plus strand signal of unique reads) 42.4 MB
ENCFF068KMA.bam bam (alignments) 4.2 GB
ENCFF070CUF.bigWig bigWig (plus strand signal of all reads) 74.7 MB
ENCFF078NCO.bigWig bigWig (plus strand signal of all reads) 74.8 MB
ENCFF100MUM.fastq fastq (reads) 2.3 GB
ENCFF101CJL.bam bam (alignments) 4.3 GB
ENCFF113ZVJ.tsv tsv (differential expression quantifications) 1.8 MB
ENCFF117QFD.bigWig bigWig (minus strand signal of all reads) 46.0 MB
ENCFF145BKX.bigWig bigWig (minus strand signal of all reads) 51.4 MB
ENCFF167JKB.bam bam (transcriptome alignments) 5.9 GB
ENCFF176IEK.tar tar (differential splicing quantifications) 13.2 MB
ENCFF177CHN.bigWig bigWig (plus strand signal of unique reads) 45.5 MB
ENCFF185VCH.bigWig bigWig (minus strand signal of all reads) 52.2 MB
ENCFF196UCW.fastq fastq (reads) 1.4 GB
ENCFF199HVY.tsv tsv (transcript quantifications) 24.9 MB
ENCFF224ZFQ.bigWig bigWig (minus strand signal of all reads) 72.7 MB
ENCFF258MXE.bigWig bigWig (minus strand signal of unique reads) 43.8 MB
ENCFF308QBJ.bigWig bigWig (plus strand signal of all reads) 53.5 MB
ENCFF309RQX.bam bam (alignments) 2.6 GB
ENCFF315VBM.bigWig bigWig (plus strand signal of all reads) 52.6 MB
ENCFF338BEZ.bigWig bigWig (minus strand signal of unique reads) 62.2 MB
ENCFF340MKJ.bigWig bigWig (plus strand signal of unique reads) 64.4 MB
ENCFF389VYH.fastq fastq (reads) 2.5 GB
ENCFF395KCV.tsv tsv (gene quantifications) 10.4 MB
ENCFF403EGK.bigWig bigWig (plus strand signal of all reads) 66.8 MB
ENCFF406BMO.tsv tsv (transcript quantifications) 24.9 MB
ENCFF413TAT.bam bam (alignments) 2.5 GB
ENCFF418YVF.bigWig bigWig (plus strand signal of unique reads) 68.2 MB
ENCFF428JFL.tsv tsv (gene quantifications) 9.4 MB
ENCFF436ELI.fastq fastq (reads) 1.4 GB
ENCFF454MKD.tsv tsv (transcript quantifications) 25.3 MB
ENCFF483XRE.bigWig bigWig (minus strand signal of unique reads) 65.9 MB
ENCFF486WKF.bam bam (alignments) 2.1 GB
ENCFF490HMJ.bam bam (transcriptome alignments) 5.2 GB
ENCFF492FKZ.bigWig bigWig (minus strand signal of unique reads) 46.9 MB
ENCFF493CVC.tsv tsv (gene quantifications) 10.4 MB
ENCFF500VFR.bam bam (alignments) 2.1 GB
ENCFF505SAN.bam bam (alignments) 2.6 GB
ENCFF512EFH.tsv tsv (differential expression quantifications) 2.0 MB
ENCFF546COX.bam bam (transcriptome alignments) 3.1 GB
ENCFF553VXP.bigWig bigWig (plus strand signal of all reads) 53.5 MB
ENCFF559KCK.bigWig bigWig (plus strand signal of unique reads) 60.5 MB
ENCFF563DBZ.bigWig bigWig (minus strand signal of all reads) 66.8 MB
ENCFF567QOQ.bam bam (alignments) 3.6 GB
ENCFF579QGA.tsv tsv (transcript quantifications) 29.7 MB
ENCFF585TWQ.tsv tsv (transcript quantifications) 27.1 MB
ENCFF593OCQ.bam bam (alignments) 3.6 GB
ENCFF608PVC.tsv tsv (transcript quantifications) 29.8 MB
ENCFF611PQW.tsv tsv (gene quantifications) 9.4 MB
ENCFF625LCW.bigWig bigWig (minus strand signal of all reads) 52.2 MB
ENCFF628FPN.bigWig bigWig (plus strand signal of unique reads) 48.4 MB
ENCFF647ZMC.bigWig bigWig (minus strand signal of all reads) 47.4 MB
ENCFF652QMK.bigWig bigWig (minus strand signal of unique reads) 46.3 MB
ENCFF678JQU.tsv tsv (gene quantifications) 9.1 MB
ENCFF687DHY.bigWig bigWig (minus strand signal of unique reads) 44.0 MB
ENCFF690VZL.bigWig bigWig (plus strand signal of all reads) 68.7 MB
ENCFF697QSL.bam bam (transcriptome alignments) 5.2 GB
ENCFF698ORH.bigWig bigWig (plus strand signal of unique reads) 48.4 MB
ENCFF702NQW.bigWig bigWig (plus strand signal of all reads) 47.2 MB
ENCFF740MLT.bigWig bigWig (plus strand signal of all reads) 48.7 MB
ENCFF762EAE.bigWig bigWig (plus strand signal of unique reads) 68.2 MB
ENCFF765BVA.bigWig bigWig (minus strand signal of all reads) 44.1 MB
ENCFF766LHE.tsv tsv (gene quantifications) 9.1 MB
ENCFF779EBK.bigWig bigWig (minus strand signal of unique reads) 65.9 MB
ENCFF785VBU.bigWig bigWig (plus strand signal of unique reads) 47.8 MB
ENCFF789UOA.bigWig bigWig (minus strand signal of unique reads) 61.1 MB
ENCFF793DSY.bigWig bigWig (minus strand signal of unique reads) 58.3 MB
ENCFF798WKZ.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF811VCE.bam bam (transcriptome alignments) 3.5 GB
ENCFF833WQZ.bigWig bigWig (minus strand signal of unique reads) 65.9 MB
ENCFF838IGN.bigWig bigWig (plus strand signal of unique reads) 45.2 MB
ENCFF857CCY.bigWig bigWig (minus strand signal of unique reads) 41.0 MB
ENCFF858JSI.bigWig bigWig (minus strand signal of all reads) 63.1 MB
ENCFF896OZV.bigWig bigWig (minus strand signal of all reads) 72.8 MB
ENCFF905NLF.tar tar (differential splicing quantifications) 3.2 MB
ENCFF922ZWG.bam bam (alignments) 2.1 GB
ENCFF953WOG.bigWig bigWig (plus strand signal of unique reads) 63.1 MB
ENCFF962VUU.bam bam (alignments) 3.6 GB
ENCFF990CWU.tsv tsv (transcript quantifications) 27.3 MB
ENCFF992YFE.tar tar (differential splicing quantifications) 2.8 MB
ENCFF995DCK.bam bam (transcriptome alignments) 3.1 GB
ENCFF998KVV.bigWig bigWig (minus strand signal of all reads) 72.8 MB
ENCSR925RNE ENCSR · via encode_api

shRNA knockdown against SERBP1 in K562 cells followed by RNA-seq. (SERBP1_BGKLV19)

Homo sapiens

92 data files
FileTypeSize
ENCFF016YEE.bigWig bigWig (plus strand signal of all reads) 71.6 MB
ENCFF023KWM.tsv tsv (gene quantifications) 10.4 MB
ENCFF030LOL.bigWig bigWig (plus strand signal of all reads) 79.2 MB
ENCFF044TRV.bigWig bigWig (plus strand signal of unique reads) 70.8 MB
ENCFF046ISR.bigWig bigWig (plus strand signal of unique reads) 63.1 MB
ENCFF046XLU.tsv tsv (transcript quantifications) 29.7 MB
ENCFF048ZXW.bigWig bigWig (plus strand signal of unique reads) 63.0 MB
ENCFF084TGW.bigWig bigWig (minus strand signal of all reads) 77.6 MB
ENCFF085HGX.bigWig bigWig (plus strand signal of all reads) 64.8 MB
ENCFF089IIX.fastq fastq (reads) 1.8 GB
ENCFF102PHG.bigWig bigWig (minus strand signal of unique reads) 65.6 MB
ENCFF119FZZ.bigWig bigWig (minus strand signal of unique reads) 65.4 MB
ENCFF132OBB.bigWig bigWig (plus strand signal of all reads) 73.2 MB
ENCFF143QQF.bam bam (alignments) 2.3 GB
ENCFF145RMT.bam bam (alignments) 3.4 GB
ENCFF164HJA.bigWig bigWig (minus strand signal of unique reads) 69.2 MB
ENCFF168YSF.bigWig bigWig (minus strand signal of unique reads) 61.6 MB
ENCFF174NYB.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF175MSZ.bigWig bigWig (plus strand signal of unique reads) 60.6 MB
ENCFF203LBO.bigWig bigWig (minus strand signal of unique reads) 69.2 MB
ENCFF217ZHW.fastq fastq (reads) 1.4 GB
ENCFF230FQO.bigWig bigWig (plus strand signal of all reads) 70.7 MB
ENCFF232UYN.tsv tsv (gene quantifications) 10.4 MB
ENCFF242DIO.bam bam (transcriptome alignments) 4.1 GB
ENCFF246KQB.bam bam (alignments) 2.9 GB
ENCFF261VVR.bigWig bigWig (plus strand signal of unique reads) 56.7 MB
ENCFF273ZJB.bigWig bigWig (plus strand signal of all reads) 61.4 MB
ENCFF279SNO.bigWig bigWig (minus strand signal of all reads) 69.9 MB
ENCFF309RTY.bigWig bigWig (plus strand signal of unique reads) 66.8 MB
ENCFF323ECT.tsv tsv (differential expression quantifications) 4.1 MB
ENCFF328OGF.bam bam (alignments) 2.9 GB
ENCFF328UZJ.bigWig bigWig (minus strand signal of unique reads) 61.6 MB
ENCFF333BPN.bigWig bigWig (minus strand signal of unique reads) 59.5 MB
ENCFF340QQZ.tsv tsv (transcript quantifications) 25.3 MB
ENCFF344LRI.bam bam (transcriptome alignments) 4.7 GB
ENCFF362VGV.tsv tsv (gene quantifications) 9.1 MB
ENCFF364KHU.tsv tsv (gene quantifications) 9.4 MB
ENCFF378EQM.tar tar (differential splicing quantifications) 13.5 MB
ENCFF392HRX.bigWig bigWig (minus strand signal of unique reads) 61.3 MB
ENCFF407EQY.bigWig bigWig (plus strand signal of unique reads) 63.0 MB
ENCFF407GPR.bigWig bigWig (minus strand signal of unique reads) 59.3 MB
ENCFF408LDZ.bigWig bigWig (minus strand signal of all reads) 78.4 MB
ENCFF409ECI.tsv tsv (gene quantifications) 9.4 MB
ENCFF423CKH.bigWig bigWig (minus strand signal of all reads) 60.4 MB
ENCFF428BCM.bam bam (alignments) 2.8 GB
ENCFF439EFY.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF443QXP.bigWig bigWig (minus strand signal of all reads) 72.0 MB
ENCFF449LAD.bigWig bigWig (plus strand signal of all reads) 65.2 MB
ENCFF459AQE.bigWig bigWig (plus strand signal of unique reads) 61.0 MB
ENCFF468CQY.tsv tsv (gene quantifications) 9.1 MB
ENCFF475AWE.bam bam (alignments) 2.3 GB
ENCFF478ZKI.bam bam (alignments) 3.5 GB
ENCFF524CBK.bam bam (transcriptome alignments) 4.1 GB
ENCFF537FHJ.bigWig bigWig (plus strand signal of all reads) 71.6 MB
ENCFF544HFV.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF559RWA.bigWig bigWig (plus strand signal of all reads) 72.1 MB
ENCFF579KTN.bam bam (alignments) 2.8 GB
ENCFF590MKY.tsv tsv (transcript quantifications) 29.8 MB
ENCFF605FSL.bigWig bigWig (minus strand signal of all reads) 78.3 MB
ENCFF637AZH.bigWig bigWig (minus strand signal of all reads) 71.3 MB
ENCFF678CZD.bam bam (transcriptome alignments) 3.2 GB
ENCFF703LMN.bam bam (alignments) 2.8 GB
ENCFF715VXY.bigWig bigWig (minus strand signal of all reads) 64.1 MB
ENCFF726ZGI.bigWig bigWig (minus strand signal of unique reads) 61.5 MB
ENCFF730NTL.bam bam (transcriptome alignments) 3.6 GB
ENCFF738AZJ.tsv tsv (transcript quantifications) 24.8 MB
ENCFF738WKU.bigWig bigWig (plus strand signal of all reads) 78.5 MB
ENCFF741OAA.bigWig bigWig (minus strand signal of unique reads) 55.2 MB
ENCFF743QIO.bigWig bigWig (minus strand signal of all reads) 70.8 MB
ENCFF749GOE.bigWig bigWig (plus strand signal of all reads) 68.1 MB
ENCFF754ZOR.fastq fastq (reads) 1.5 GB
ENCFF765UIJ.tar tar (differential splicing quantifications) 3.2 MB
ENCFF782MIU.fastq fastq (reads) 1.9 GB
ENCFF796AQK.tsv tsv (transcript quantifications) 27.3 MB
ENCFF813NTN.bigWig bigWig (minus strand signal of all reads) 70.8 MB
ENCFF814XMS.bigWig bigWig (minus strand signal of all reads) 64.3 MB
ENCFF815LYM.tar tar (differential splicing quantifications) 3.7 MB
ENCFF821YFS.bam bam (alignments) 2.3 GB
ENCFF831KOA.tsv tsv (transcript quantifications) 27.3 MB
ENCFF838GSP.bam bam (alignments) 3.5 GB
ENCFF859QFF.bigWig bigWig (minus strand signal of unique reads) 68.7 MB
ENCFF870BON.bigWig bigWig (plus strand signal of unique reads) 70.8 MB
ENCFF895JCG.bigWig bigWig (plus strand signal of unique reads) 70.4 MB
ENCFF922MZF.bigWig bigWig (plus strand signal of unique reads) 67.3 MB
ENCFF940IVT.bam bam (alignments) 2.9 GB
ENCFF944RLR.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF964NFX.bam bam (transcriptome alignments) 3.1 GB
ENCFF966LRA.tsv tsv (transcript quantifications) 25.3 MB
ENCFF973EQD.bigWig bigWig (plus strand signal of all reads) 79.2 MB
ENCFF980SZU.tsv tsv (transcript quantifications) 24.9 MB
ENCFF984ZVZ.bigWig bigWig (minus strand signal of all reads) 67.0 MB
ENCFF987DBL.bigWig bigWig (plus strand signal of unique reads) 63.1 MB
ENCSR905HID ENCSR · via encode_api

RNA-seq on HepG2 cells treated with an shRNA knockdown against FMR1. (FMR1-BGHLV23)

Homo sapiens

92 data files
FileTypeSize
ENCFF014NKL.tsv tsv (transcript quantifications) 29.8 MB
ENCFF020OPH.bam bam (transcriptome alignments) 6.0 GB
ENCFF035LSX.bam bam (alignments) 4.6 GB
ENCFF039ZRW.bigWig bigWig (plus strand signal of all reads) 83.0 MB
ENCFF045GQX.bam bam (alignments) 3.7 GB
ENCFF068QSJ.bam bam (alignments) 3.7 GB
ENCFF081FWZ.bigWig bigWig (minus strand signal of all reads) 65.1 MB
ENCFF093MQM.bigWig bigWig (plus strand signal of all reads) 83.0 MB
ENCFF094ZJC.bigWig bigWig (plus strand signal of all reads) 65.1 MB
ENCFF095UIX.bigWig bigWig (minus strand signal of unique reads) 64.7 MB
ENCFF107GGG.tsv tsv (differential expression quantifications) 2.8 MB
ENCFF109EEK.bam bam (alignments) 4.6 GB
ENCFF116MWT.bam bam (alignments) 4.3 GB
ENCFF118GDL.bigWig bigWig (minus strand signal of all reads) 64.9 MB
ENCFF184NWB.bigWig bigWig (minus strand signal of all reads) 80.1 MB
ENCFF193FFL.fastq fastq (reads) 2.3 GB
ENCFF195SVQ.bigWig bigWig (plus strand signal of unique reads) 63.1 MB
ENCFF196CAR.tsv tsv (transcript quantifications) 24.9 MB
ENCFF199ZET.tar tar (differential splicing quantifications) 4.3 MB
ENCFF201TDC.bigWig bigWig (plus strand signal of unique reads) 61.1 MB
ENCFF215ILM.bigWig bigWig (minus strand signal of unique reads) 73.1 MB
ENCFF220AJD.bigWig bigWig (minus strand signal of unique reads) 64.7 MB
ENCFF230KFS.tsv tsv (gene quantifications) 9.1 MB
ENCFF232ZQF.bigWig bigWig (minus strand signal of unique reads) 65.1 MB
ENCFF234LTX.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF239WYN.bigWig bigWig (plus strand signal of unique reads) 70.3 MB
ENCFF250RZH.bigWig bigWig (minus strand signal of unique reads) 72.6 MB
ENCFF254DHB.tsv tsv (gene quantifications) 9.5 MB
ENCFF267LEN.tsv tsv (transcript quantifications) 27.3 MB
ENCFF272WFQ.fastq fastq (reads) 2.4 GB
ENCFF296LGW.tsv tsv (differential expression quantifications) 5.5 MB
ENCFF300AES.bigWig bigWig (minus strand signal of unique reads) 66.9 MB
ENCFF323LWK.bigWig bigWig (minus strand signal of all reads) 72.5 MB
ENCFF326NGZ.bam bam (alignments) 5.5 GB
ENCFF326YLT.fastq fastq (reads) 2.9 GB
ENCFF339AAQ.fastq fastq (reads) 3.0 GB
ENCFF350GOX.bigWig bigWig (plus strand signal of all reads) 75.4 MB
ENCFF352NEU.bigWig bigWig (plus strand signal of unique reads) 62.2 MB
ENCFF368JGF.bigWig bigWig (plus strand signal of all reads) 72.8 MB
ENCFF379XWG.bigWig bigWig (plus strand signal of all reads) 73.6 MB
ENCFF382BWK.tsv tsv (gene quantifications) 9.1 MB
ENCFF392SLX.bigWig bigWig (minus strand signal of all reads) 81.4 MB
ENCFF394KFZ.bigWig bigWig (minus strand signal of unique reads) 72.9 MB
ENCFF397WPM.bigWig bigWig (minus strand signal of unique reads) 60.6 MB
ENCFF398NSJ.tsv tsv (transcript quantifications) 27.3 MB
ENCFF436BIQ.tsv tsv (transcript quantifications) 24.9 MB
ENCFF446GXK.bigWig bigWig (plus strand signal of unique reads) 74.9 MB
ENCFF451RYW.bam bam (transcriptome alignments) 6.7 GB
ENCFF455NEX.tsv tsv (gene quantifications) 10.4 MB
ENCFF460OYU.bigWig bigWig (minus strand signal of all reads) 63.4 MB
ENCFF464EMW.bigWig bigWig (plus strand signal of all reads) 73.9 MB
ENCFF476ULX.bigWig bigWig (minus strand signal of unique reads) 69.3 MB
ENCFF477SVN.bigWig bigWig (minus strand signal of all reads) 72.5 MB
ENCFF478KVK.bigWig bigWig (minus strand signal of all reads) 71.5 MB
ENCFF484MXB.bigWig bigWig (plus strand signal of all reads) 81.5 MB
ENCFF486UNI.bam bam (transcriptome alignments) 5.3 GB
ENCFF494ZVU.bigWig bigWig (plus strand signal of unique reads) 67.0 MB
ENCFF500CQP.bam bam (alignments) 5.5 GB
ENCFF506OSY.bigWig bigWig (minus strand signal of unique reads) 68.5 MB
ENCFF510HYP.bigWig bigWig (plus strand signal of all reads) 74.0 MB
ENCFF519AHH.bam bam (alignments) 4.4 GB
ENCFF539IOB.tar tar (differential splicing quantifications) 17.5 MB
ENCFF597YVJ.tsv tsv (gene quantifications) 10.4 MB
ENCFF600FEK.bigWig bigWig (minus strand signal of all reads) 81.5 MB
ENCFF624GAT.tsv tsv (transcript quantifications) 25.3 MB
ENCFF648NWP.bigWig bigWig (plus strand signal of unique reads) 71.3 MB
ENCFF650VAJ.bigWig bigWig (minus strand signal of all reads) 73.8 MB
ENCFF654TVZ.bigWig bigWig (minus strand signal of all reads) 71.9 MB
ENCFF674RGZ.bam bam (alignments) 3.8 GB
ENCFF680NPO.bigWig bigWig (plus strand signal of all reads) 74.0 MB
ENCFF690UUQ.bigWig bigWig (plus strand signal of unique reads) 66.5 MB
ENCFF722HLC.tsv tsv (differential expression quantifications) 4.2 MB
ENCFF731UWR.bigWig bigWig (plus strand signal of all reads) 66.5 MB
ENCFF735UST.tsv tsv (transcript quantifications) 25.3 MB
ENCFF759NUH.bigWig bigWig (minus strand signal of unique reads) 59.3 MB
ENCFF767THE.tar tar (differential splicing quantifications) 3.4 MB
ENCFF770IYR.bam bam (transcriptome alignments) 5.4 GB
ENCFF798DQI.bigWig bigWig (minus strand signal of unique reads) 61.3 MB
ENCFF810CWA.bam bam (transcriptome alignments) 6.8 GB
ENCFF846JJE.tsv tsv (gene quantifications) 9.4 MB
ENCFF852DHN.bigWig bigWig (plus strand signal of unique reads) 74.6 MB
ENCFF864VOO.bam bam (alignments) 4.7 GB
ENCFF879XGU.tsv tsv (transcript quantifications) 29.8 MB
ENCFF882WOK.bigWig bigWig (minus strand signal of all reads) 72.5 MB
ENCFF887HTJ.bam bam (alignments) 4.4 GB
ENCFF889ZAD.bigWig bigWig (plus strand signal of all reads) 66.2 MB
ENCFF900XKL.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF913XXV.bam bam (alignments) 5.3 GB
ENCFF943FUH.bigWig bigWig (plus strand signal of unique reads) 75.3 MB
ENCFF960QPX.bigWig bigWig (plus strand signal of unique reads) 69.1 MB
ENCFF975WMW.bam bam (transcriptome alignments) 7.5 GB
ENCFF996ZSP.bigWig bigWig (plus strand signal of unique reads) 66.6 MB
ENCSR539RTM ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) pulldown experiment against PCBP1

15 data files
FileTypeSize
ENCFF015VYZ.fastq fastq (reads) 276.5 MB
ENCFF111WYI.fastq fastq (reads) 310.1 MB
ENCFF134JFO.fastq fastq (reads) 397.7 MB
ENCFF153TFF.tsv tsv (library fraction) 64.0 KB
ENCFF268RKR.tsv tsv (enrichment) 41.0 KB
ENCFF319TDW.bed bed (peaks) 169.9 KB
ENCFF391AFQ.tsv tsv (library fraction) 1.1 MB
ENCFF488GYB.tsv tsv (library fraction) 15.2 KB
ENCFF544DRZ.bed bed (peaks) 71.8 KB
ENCFF564LBJ.tsv tsv (enrichment) 168.0 KB
ENCFF669GAJ.tsv tsv (enrichment) 688.0 KB
ENCFF730IXM.tsv tsv (library fraction) 265.1 KB
ENCFF894ONZ.tsv tsv (enrichment) 10.0 KB
ENCFF965AGF.fastq fastq (reads) 328.4 MB
ENCFF975PLP.fastq fastq (reads) 702.3 MB
ENCSR459EMR ENCSR · via encode_api

RNA-seq on HepG2 cells treated with an shRNA knockdown against TUFM. (TUFM-BGHLV23)

Homo sapiens

92 data files
FileTypeSize
ENCFF006BHZ.bigWig bigWig (minus strand signal of unique reads) 69.9 MB
ENCFF016OSC.tar tar (differential splicing quantifications) 17.4 MB
ENCFF018YUK.tsv tsv (differential expression quantifications) 4.4 MB
ENCFF035BJB.bigWig bigWig (minus strand signal of all reads) 82.0 MB
ENCFF044OAS.bigWig bigWig (plus strand signal of unique reads) 76.4 MB
ENCFF059JFX.bam bam (alignments) 4.3 GB
ENCFF073UQO.tsv tsv (gene quantifications) 9.1 MB
ENCFF085QXO.bam bam (alignments) 5.2 GB
ENCFF099HBQ.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF114ZTB.bam bam (transcriptome alignments) 6.2 GB
ENCFF138ZWR.tsv tsv (transcript quantifications) 25.3 MB
ENCFF149GYR.bigWig bigWig (minus strand signal of all reads) 73.6 MB
ENCFF156FMU.bigWig bigWig (minus strand signal of all reads) 73.2 MB
ENCFF157HHG.bam bam (transcriptome alignments) 6.9 GB
ENCFF160QWP.bigWig bigWig (minus strand signal of all reads) 82.8 MB
ENCFF184CJY.bigWig bigWig (minus strand signal of all reads) 81.6 MB
ENCFF218WAD.tar tar (differential splicing quantifications) 3.6 MB
ENCFF223YDM.bam bam (alignments) 4.5 GB
ENCFF232FWJ.tsv tsv (transcript quantifications) 25.3 MB
ENCFF234EIF.tsv tsv (gene quantifications) 9.5 MB
ENCFF237CHW.bigWig bigWig (plus strand signal of all reads) 74.3 MB
ENCFF242BFC.bigWig bigWig (minus strand signal of all reads) 75.2 MB
ENCFF247LMU.bam bam (alignments) 5.0 GB
ENCFF256YGO.bigWig bigWig (plus strand signal of all reads) 76.8 MB
ENCFF262VZZ.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF263DFL.fastq fastq (reads) 2.8 GB
ENCFF272WGZ.bigWig bigWig (plus strand signal of unique reads) 70.5 MB
ENCFF274PZK.bam bam (alignments) 4.3 GB
ENCFF280CHG.bigWig bigWig (plus strand signal of unique reads) 72.4 MB
ENCFF297VMW.bigWig bigWig (plus strand signal of unique reads) 75.0 MB
ENCFF297ZQT.tsv tsv (transcript quantifications) 27.4 MB
ENCFF315JQG.bigWig bigWig (minus strand signal of unique reads) 68.1 MB
ENCFF328WOU.bam bam (alignments) 5.0 GB
ENCFF329BME.tsv tsv (differential expression quantifications) 1.8 MB
ENCFF338YTU.bigWig bigWig (minus strand signal of unique reads) 71.9 MB
ENCFF342LYZ.bam bam (transcriptome alignments) 7.1 GB
ENCFF367XJW.bigWig bigWig (minus strand signal of unique reads) 68.3 MB
ENCFF421HRV.tsv tsv (transcript quantifications) 29.8 MB
ENCFF426LQZ.bigWig bigWig (plus strand signal of all reads) 74.6 MB
ENCFF442MLZ.bam bam (transcriptome alignments) 6.2 GB
ENCFF453FSL.tar tar (differential splicing quantifications) 4.7 MB
ENCFF471LKZ.fastq fastq (reads) 2.7 GB
ENCFF473WCD.tsv tsv (gene quantifications) 9.5 MB
ENCFF474REG.tsv tsv (gene quantifications) 10.4 MB
ENCFF482FRW.tsv tsv (transcript quantifications) 27.3 MB
ENCFF484DNV.bigWig bigWig (minus strand signal of all reads) 74.4 MB
ENCFF485ZMK.bigWig bigWig (minus strand signal of all reads) 81.0 MB
ENCFF494THC.bigWig bigWig (minus strand signal of unique reads) 72.8 MB
ENCFF502VHY.tsv tsv (gene quantifications) 9.1 MB
ENCFF517NDF.tsv tsv (gene quantifications) 10.4 MB
ENCFF536QIM.bam bam (alignments) 4.2 GB
ENCFF545LRA.bam bam (transcriptome alignments) 6.4 GB
ENCFF577RMJ.bigWig bigWig (minus strand signal of unique reads) 68.6 MB
ENCFF603YRK.bigWig bigWig (plus strand signal of unique reads) 71.8 MB
ENCFF613GXO.bigWig bigWig (minus strand signal of unique reads) 74.3 MB
ENCFF613LHI.bigWig bigWig (plus strand signal of all reads) 74.3 MB
ENCFF624EBI.bigWig bigWig (minus strand signal of unique reads) 74.3 MB
ENCFF638VGE.bigWig bigWig (plus strand signal of unique reads) 75.7 MB
ENCFF643RFH.bigWig bigWig (plus strand signal of unique reads) 74.3 MB
ENCFF656EXK.bigWig bigWig (plus strand signal of unique reads) 70.2 MB
ENCFF660XOE.bigWig bigWig (plus strand signal of all reads) 83.2 MB
ENCFF661XFP.bigWig bigWig (plus strand signal of all reads) 75.0 MB
ENCFF662DLG.bigWig bigWig (minus strand signal of unique reads) 72.2 MB
ENCFF662XAR.tsv tsv (transcript quantifications) 24.9 MB
ENCFF680XVB.tsv tsv (transcript quantifications) 29.8 MB
ENCFF682LRF.bigWig bigWig (plus strand signal of all reads) 76.0 MB
ENCFF709PZI.bam bam (alignments) 4.9 GB
ENCFF720BUP.tsv tsv (transcript quantifications) 24.9 MB
ENCFF750DNI.fastq fastq (reads) 2.7 GB
ENCFF783YJW.bigWig bigWig (plus strand signal of unique reads) 73.9 MB
ENCFF793RBO.bigWig bigWig (plus strand signal of all reads) 82.4 MB
ENCFF797ZBZ.bigWig bigWig (minus strand signal of unique reads) 70.3 MB
ENCFF798PTB.bigWig bigWig (plus strand signal of unique reads) 70.3 MB
ENCFF799TSJ.bigWig bigWig (plus strand signal of unique reads) 76.3 MB
ENCFF802CAQ.bigWig bigWig (minus strand signal of all reads) 82.8 MB
ENCFF802IXP.bigWig bigWig (plus strand signal of unique reads) 69.4 MB
ENCFF829OTM.bigWig bigWig (minus strand signal of all reads) 72.4 MB
ENCFF830ZCL.bigWig bigWig (plus strand signal of all reads) 84.4 MB
ENCFF850RUM.bigWig bigWig (plus strand signal of all reads) 84.4 MB
ENCFF850SLD.bam bam (transcriptome alignments) 6.4 GB
ENCFF851CPX.bigWig bigWig (minus strand signal of all reads) 72.6 MB
ENCFF893DVR.tsv tsv (differential expression quantifications) 5.5 MB
ENCFF896YDQ.bigWig bigWig (plus strand signal of all reads) 83.2 MB
ENCFF904ZSQ.bam bam (alignments) 4.2 GB
ENCFF910VWV.bigWig bigWig (minus strand signal of unique reads) 73.6 MB
ENCFF915YXE.bigWig bigWig (minus strand signal of unique reads) 67.3 MB
ENCFF930DYT.bam bam (alignments) 5.2 GB
ENCFF939PHY.fastq fastq (reads) 2.7 GB
ENCFF955KYN.bam bam (alignments) 5.0 GB
ENCFF966SIA.bigWig bigWig (minus strand signal of all reads) 81.7 MB
ENCFF997JOB.bam bam (alignments) 4.3 GB
ENCFF998UJL.bigWig bigWig (plus strand signal of all reads) 83.4 MB
ENCSR535YPK ENCSR · via encode_api

RNA-seq on K562 cells treated with an shRNA knockdown against SFPQ. (SFPQ_BGKLV28)

Homo sapiens

92 data files
FileTypeSize
ENCFF010BMD.bigWig bigWig (minus strand signal of unique reads) 84.9 MB
ENCFF011SQS.bam bam (alignments) 3.3 GB
ENCFF033NCA.bigWig bigWig (plus strand signal of all reads) 86.6 MB
ENCFF034SCZ.bigWig bigWig (plus strand signal of all reads) 84.0 MB
ENCFF039EHX.tsv tsv (differential expression quantifications) 4.3 MB
ENCFF064DBA.bigWig bigWig (plus strand signal of unique reads) 74.7 MB
ENCFF091AYR.tsv tsv (gene quantifications) 10.4 MB
ENCFF098PQR.bigWig bigWig (plus strand signal of unique reads) 82.5 MB
ENCFF105GIS.bam bam (alignments) 3.5 GB
ENCFF108BUM.tsv tsv (transcript quantifications) 27.4 MB
ENCFF120HUL.tsv tsv (transcript quantifications) 24.9 MB
ENCFF128MZX.tsv tsv (differential expression quantifications) 2.0 MB
ENCFF131RSE.bigWig bigWig (minus strand signal of unique reads) 76.4 MB
ENCFF152JWR.bigWig bigWig (plus strand signal of all reads) 90.0 MB
ENCFF163FAY.bigWig bigWig (plus strand signal of unique reads) 78.9 MB
ENCFF189WJH.bam bam (alignments) 4.2 GB
ENCFF192VBT.bigWig bigWig (minus strand signal of unique reads) 79.7 MB
ENCFF198ANK.bigWig bigWig (plus strand signal of unique reads) 83.1 MB
ENCFF203NXZ.bigWig bigWig (plus strand signal of all reads) 97.4 MB
ENCFF214BIV.bam bam (alignments) 3.5 GB
ENCFF217RIP.bam bam (alignments) 4.4 GB
ENCFF219PTE.bigWig bigWig (plus strand signal of all reads) 93.3 MB
ENCFF229HSB.tsv tsv (transcript quantifications) 29.8 MB
ENCFF243JIT.bigWig bigWig (minus strand signal of all reads) 97.3 MB
ENCFF247NFC.bam bam (transcriptome alignments) 5.1 GB
ENCFF270XGV.bigWig bigWig (plus strand signal of all reads) 93.3 MB
ENCFF276XXO.bigWig bigWig (minus strand signal of unique reads) 84.3 MB
ENCFF326CRX.bigWig bigWig (minus strand signal of unique reads) 80.7 MB
ENCFF342CGF.bam bam (alignments) 3.5 GB
ENCFF352QNN.bigWig bigWig (minus strand signal of all reads) 95.8 MB
ENCFF362NVA.bigWig bigWig (minus strand signal of all reads) 91.8 MB
ENCFF369ZWV.bigWig bigWig (minus strand signal of all reads) 88.1 MB
ENCFF379KXH.fastq fastq (reads) 2.3 GB
ENCFF403NKA.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF414XQC.bigWig bigWig (plus strand signal of unique reads) 86.8 MB
ENCFF419IAJ.bigWig bigWig (plus strand signal of unique reads) 81.8 MB
ENCFF420GJW.bigWig bigWig (plus strand signal of unique reads) 87.2 MB
ENCFF420XAQ.bam bam (alignments) 4.4 GB
ENCFF433SCM.tar tar (differential splicing quantifications) 4.8 MB
ENCFF446HBA.bigWig bigWig (plus strand signal of all reads) 98.7 MB
ENCFF452JMG.bigWig bigWig (plus strand signal of all reads) 86.8 MB
ENCFF457XNA.bigWig bigWig (minus strand signal of all reads) 84.5 MB
ENCFF463DNG.bigWig bigWig (minus strand signal of unique reads) 80.3 MB
ENCFF467JYF.bigWig bigWig (plus strand signal of unique reads) 87.3 MB
ENCFF473XCG.bigWig bigWig (plus strand signal of unique reads) 82.1 MB
ENCFF482OXE.fastq fastq (reads) 2.5 GB
ENCFF487JOJ.bigWig bigWig (minus strand signal of all reads) 80.6 MB
ENCFF493QTZ.tsv tsv (gene quantifications) 9.1 MB
ENCFF501WUC.tar tar (differential splicing quantifications) 3.8 MB
ENCFF532XJO.bam bam (transcriptome alignments) 5.9 GB
ENCFF539UEN.tsv tsv (transcript quantifications) 25.3 MB
ENCFF546FOJ.bigWig bigWig (plus strand signal of all reads) 91.5 MB
ENCFF552SLM.bam bam (alignments) 4.2 GB
ENCFF573IFY.bigWig bigWig (minus strand signal of all reads) 85.5 MB
ENCFF592HTK.tsv tsv (transcript quantifications) 29.8 MB
ENCFF611EKQ.bigWig bigWig (minus strand signal of unique reads) 80.0 MB
ENCFF612KDT.bam bam (transcriptome alignments) 5.6 GB
ENCFF621CJV.bigWig bigWig (minus strand signal of all reads) 82.2 MB
ENCFF627HZQ.tsv tsv (transcript quantifications) 27.4 MB
ENCFF643ISN.tsv tsv (differential expression quantifications) 5.5 MB
ENCFF657TEH.fastq fastq (reads) 2.5 GB
ENCFF667UOW.tsv tsv (gene quantifications) 9.1 MB
ENCFF685MXZ.bigWig bigWig (minus strand signal of unique reads) 79.4 MB
ENCFF706HKV.bigWig bigWig (plus strand signal of unique reads) 77.4 MB
ENCFF710VRD.bigWig bigWig (minus strand signal of unique reads) 75.1 MB
ENCFF731AJF.bigWig bigWig (plus strand signal of all reads) 82.0 MB
ENCFF738YNE.bam bam (transcriptome alignments) 5.1 GB
ENCFF739ETP.bam bam (alignments) 3.3 GB
ENCFF753NAE.bigWig bigWig (plus strand signal of all reads) 98.7 MB
ENCFF774OFC.tsv tsv (transcript quantifications) 25.3 MB
ENCFF778EPF.bigWig bigWig (minus strand signal of all reads) 97.3 MB
ENCFF783BIL.tsv tsv (gene quantifications) 10.4 MB
ENCFF783RKF.fastq fastq (reads) 2.3 GB
ENCFF800MGC.bam bam (alignments) 3.3 GB
ENCFF834HMK.tsv tsv (gene quantifications) 9.5 MB
ENCFF841MOI.bam bam (transcriptome alignments) 6.4 GB
ENCFF842MFV.tsv tsv (gene quantifications) 9.5 MB
ENCFF847WRP.bigWig bigWig (minus strand signal of all reads) 79.2 MB
ENCFF858TOT.bigWig bigWig (minus strand signal of unique reads) 85.0 MB
ENCFF859YQN.bigWig bigWig (plus strand signal of all reads) 81.1 MB
ENCFF869EPO.bam bam (transcriptome alignments) 5.6 GB
ENCFF883ELI.bigWig bigWig (plus strand signal of unique reads) 81.7 MB
ENCFF896XXO.bigWig bigWig (minus strand signal of all reads) 89.8 MB
ENCFF905FPA.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF919WXC.bam bam (alignments) 4.3 GB
ENCFF925GHQ.bigWig bigWig (plus strand signal of unique reads) 77.1 MB
ENCFF934PHB.tsv tsv (transcript quantifications) 24.9 MB
ENCFF939MSC.bigWig bigWig (minus strand signal of unique reads) 72.4 MB
ENCFF943OWI.bigWig bigWig (minus strand signal of unique reads) 75.1 MB
ENCFF952NHN.tar tar (differential splicing quantifications) 16.0 MB
ENCFF964BPV.bigWig bigWig (minus strand signal of all reads) 91.8 MB
ENCFF978EBP.bam bam (alignments) 4.0 GB
ENCSR812TLY ENCSR · via encode_api

RNA-seq on K562 cells treated with an shRNA knockdown against AGGF1. (AGGF1_BGKLV32)

Homo sapiens

92 data files
FileTypeSize
ENCFF004RAH.tsv tsv (differential expression quantifications) 3.0 MB
ENCFF006PCN.bigWig bigWig (plus strand signal of all reads) 97.6 MB
ENCFF018CGC.bigWig bigWig (plus strand signal of unique reads) 91.5 MB
ENCFF021KQN.tsv tsv (gene quantifications) 9.5 MB
ENCFF022SPV.bigWig bigWig (minus strand signal of all reads) 94.1 MB
ENCFF039LFE.bam bam (transcriptome alignments) 7.1 GB
ENCFF049UYR.bigWig bigWig (plus strand signal of all reads) 111.0 MB
ENCFF075GSB.tar tar (differential splicing quantifications) 5.7 MB
ENCFF080GSW.bam bam (alignments) 6.3 GB
ENCFF085YVX.bigWig bigWig (plus strand signal of all reads) 96.2 MB
ENCFF117CDQ.bigWig bigWig (plus strand signal of unique reads) 91.7 MB
ENCFF130GWL.bigWig bigWig (minus strand signal of all reads) 108.7 MB
ENCFF147LIU.bigWig bigWig (minus strand signal of unique reads) 95.4 MB
ENCFF163VYB.bigWig bigWig (minus strand signal of unique reads) 94.8 MB
ENCFF167GSK.bigWig bigWig (plus strand signal of all reads) 96.1 MB
ENCFF167MPB.bigWig bigWig (minus strand signal of unique reads) 95.5 MB
ENCFF178OBK.bigWig bigWig (plus strand signal of unique reads) 97.8 MB
ENCFF185FDO.bigWig bigWig (minus strand signal of unique reads) 86.6 MB
ENCFF193THP.bigWig bigWig (minus strand signal of all reads) 94.4 MB
ENCFF201AKH.bigWig bigWig (plus strand signal of unique reads) 90.1 MB
ENCFF209AWZ.fastq fastq (reads) 3.3 GB
ENCFF238NHD.fastq fastq (reads) 3.3 GB
ENCFF257VQJ.bigWig bigWig (plus strand signal of all reads) 108.9 MB
ENCFF259WTR.bigWig bigWig (plus strand signal of all reads) 111.1 MB
ENCFF272PPI.bigWig bigWig (minus strand signal of unique reads) 88.8 MB
ENCFF272XCH.bigWig bigWig (minus strand signal of all reads) 106.6 MB
ENCFF282GYA.bigWig bigWig (plus strand signal of unique reads) 91.9 MB
ENCFF284ALQ.tsv tsv (transcript quantifications) 27.4 MB
ENCFF310IUP.tsv tsv (gene quantifications) 9.1 MB
ENCFF311NAB.bam bam (transcriptome alignments) 7.7 GB
ENCFF318AYJ.bam bam (alignments) 6.5 GB
ENCFF319MQM.bigWig bigWig (plus strand signal of all reads) 108.5 MB
ENCFF320RXI.bigWig bigWig (minus strand signal of all reads) 95.1 MB
ENCFF332NAK.bigWig bigWig (plus strand signal of unique reads) 98.1 MB
ENCFF333XSH.tsv tsv (transcript quantifications) 24.9 MB
ENCFF351NEY.tsv tsv (differential expression quantifications) 4.5 MB
ENCFF386VJZ.tsv tsv (transcript quantifications) 27.4 MB
ENCFF395NLR.bigWig bigWig (minus strand signal of unique reads) 95.8 MB
ENCFF399GVT.tsv tsv (transcript quantifications) 29.9 MB
ENCFF400YIK.bigWig bigWig (plus strand signal of unique reads) 98.6 MB
ENCFF409KVJ.bigWig bigWig (minus strand signal of unique reads) 88.8 MB
ENCFF421LNM.bam bam (alignments) 6.3 GB
ENCFF442NBS.bigWig bigWig (minus strand signal of all reads) 96.9 MB
ENCFF463FTL.bigWig bigWig (plus strand signal of all reads) 109.2 MB
ENCFF464WXW.bam bam (transcriptome alignments) 6.8 GB
ENCFF485XJK.bigWig bigWig (minus strand signal of unique reads) 94.7 MB
ENCFF486LUD.bam bam (alignments) 5.0 GB
ENCFF492ABJ.bam bam (alignments) 5.2 GB
ENCFF516JLX.bigWig bigWig (minus strand signal of all reads) 108.7 MB
ENCFF537POP.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF546SIA.bigWig bigWig (minus strand signal of unique reads) 88.7 MB
ENCFF548MMW.bam bam (alignments) 6.3 GB
ENCFF567DFZ.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF568RUW.bigWig bigWig (plus strand signal of unique reads) 98.3 MB
ENCFF569FZR.bigWig bigWig (plus strand signal of unique reads) 98.8 MB
ENCFF569ULW.tsv tsv (transcript quantifications) 29.9 MB
ENCFF569YWS.tsv tsv (differential expression quantifications) 2.0 MB
ENCFF614ZJJ.bam bam (transcriptome alignments) 6.8 GB
ENCFF624WIK.tsv tsv (transcript quantifications) 25.4 MB
ENCFF625RUL.tsv tsv (gene quantifications) 9.1 MB
ENCFF635SNO.bigWig bigWig (plus strand signal of all reads) 108.9 MB
ENCFF642BVN.bigWig bigWig (minus strand signal of unique reads) 95.1 MB
ENCFF643GWF.bigWig bigWig (minus strand signal of all reads) 93.5 MB
ENCFF645MJF.bigWig bigWig (plus strand signal of all reads) 95.8 MB
ENCFF652AKA.bigWig bigWig (plus strand signal of all reads) 96.6 MB
ENCFF652GQO.bam bam (alignments) 6.5 GB
ENCFF654OXL.bam bam (alignments) 6.0 GB
ENCFF670WOC.bigWig bigWig (minus strand signal of all reads) 106.2 MB
ENCFF673PWS.bigWig bigWig (minus strand signal of all reads) 106.9 MB
ENCFF710MKP.bigWig bigWig (minus strand signal of all reads) 93.2 MB
ENCFF711BFL.tsv tsv (transcript quantifications) 25.4 MB
ENCFF713QYY.bam bam (alignments) 5.1 GB
ENCFF721LCE.fastq fastq (reads) 3.4 GB
ENCFF738BZA.tsv tsv (gene quantifications) 10.4 MB
ENCFF748SUN.fastq fastq (reads) 3.4 GB
ENCFF759MBI.bam bam (transcriptome alignments) 8.0 GB
ENCFF759QKX.bigWig bigWig (plus strand signal of all reads) 99.5 MB
ENCFF762MIT.bam bam (alignments) 5.0 GB
ENCFF775DMO.tsv tsv (gene quantifications) 10.4 MB
ENCFF777BTK.tsv tsv (gene quantifications) 9.5 MB
ENCFF780PYM.bam bam (alignments) 5.2 GB
ENCFF792NAZ.bigWig bigWig (minus strand signal of all reads) 106.6 MB
ENCFF797ZTH.bigWig bigWig (minus strand signal of unique reads) 85.5 MB
ENCFF818YQF.bigWig bigWig (plus strand signal of unique reads) 98.1 MB
ENCFF848FKJ.bam bam (transcriptome alignments) 7.0 GB
ENCFF872OXI.bam bam (alignments) 5.3 GB
ENCFF878IRR.bigWig bigWig (minus strand signal of unique reads) 87.4 MB
ENCFF879REF.bigWig bigWig (plus strand signal of unique reads) 89.8 MB
ENCFF889OKF.tar tar (differential splicing quantifications) 16.7 MB
ENCFF905DHY.tsv tsv (transcript quantifications) 24.9 MB
ENCFF909JSH.tar tar (differential splicing quantifications) 4.2 MB
ENCFF911KJO.bigWig bigWig (plus strand signal of unique reads) 88.6 MB
ENCSR406OOZ ENCSR · via encode_api

eCLIP experiment on HepG2 against SUB1

Homo sapiens

34 data files
FileTypeSize
ENCFF017WSJ.bigBed bigBed (peaks) 1.4 MB
ENCFF033IXH.bed bed (peaks) 944.2 KB
ENCFF061KCU.bigBed bigBed (peaks) 749.6 KB
ENCFF098VAP.bigWig bigWig (minus strand signal of unique reads) 4.1 MB
ENCFF136QVH.bed bed (peaks) 341.9 KB
ENCFF178PSK.bigBed bigBed (peaks) 1.4 MB
ENCFF211CBI.bigWig bigWig (plus strand signal of unique reads) 4.2 MB
ENCFF228FAK.bam bam (alignments) 79.0 MB
ENCFF277RZH.bed bed (peaks) 753.6 KB
ENCFF335JTC.bed bed (peaks) 75.7 KB
ENCFF400IPB.bigBed bigBed (peaks) 1.6 MB
ENCFF401JKW.bigBed bigBed (peaks) 1.6 MB
ENCFF416HFS.bam bam (alignments) 78.1 MB
ENCFF443VTY.bed bed (peaks) 809.2 KB
ENCFF457GXO.fastq fastq (reads) 464.7 MB
ENCFF470VNT.bigWig bigWig (plus strand signal of unique reads) 4.1 MB
ENCFF510KUY.bed bed (peaks) 77.9 KB
ENCFF513BPQ.fastq fastq (reads) 489.8 MB
ENCFF514FZF.bigWig bigWig (minus strand signal of unique reads) 4.1 MB
ENCFF514SOO.fastq fastq (reads) 689.1 MB
ENCFF564EGL.bed bed (peaks) 839.1 KB
ENCFF606GDB.bed bed (peaks) 374.7 KB
ENCFF630HUR.bigBed bigBed (peaks) 1.5 MB
ENCFF702PLE.bigBed bigBed (peaks) 1.5 MB
ENCFF719WCP.bigWig bigWig (plus strand signal of unique reads) 4.3 MB
ENCFF762NHP.bigWig bigWig (minus strand signal of unique reads) 4.1 MB
ENCFF790BKB.bed bed (peaks) 936.0 KB
ENCFF811LOQ.fastq fastq (reads) 643.8 MB
ENCFF830DRY.bigWig bigWig (plus strand signal of unique reads) 4.2 MB
ENCFF908VRY.bam bam (alignments) 83.5 MB
ENCFF974INA.bigWig bigWig (minus strand signal of unique reads) 4.2 MB
ENCFF978MMK.bed bed (peaks) 836.0 KB
ENCFF983TVE.bigBed bigBed (peaks) 813.2 KB
ENCFF994CFH.bam bam (alignments) 80.0 MB
ENCSR701GSV ENCSR · via encode_api

RNA-seq on HepG2 cells treated with an shRNA knockdown against MTPAP. (MTPAP_BGHLV35)

Homo sapiens

92 data files
FileTypeSize
ENCFF022GNK.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF036KUL.bam bam (transcriptome alignments) 6.1 GB
ENCFF053PJD.tsv tsv (gene quantifications) 9.5 MB
ENCFF055JUC.bam bam (alignments) 5.5 GB
ENCFF055QLB.tsv tsv (transcript quantifications) 25.4 MB
ENCFF083OMT.bam bam (transcriptome alignments) 6.8 GB
ENCFF085HYH.bigWig bigWig (minus strand signal of all reads) 76.5 MB
ENCFF089UWM.bigWig bigWig (plus strand signal of all reads) 88.7 MB
ENCFF097NYB.bigWig bigWig (plus strand signal of unique reads) 65.3 MB
ENCFF102OTT.bigWig bigWig (plus strand signal of all reads) 72.7 MB
ENCFF111EXI.bigWig bigWig (minus strand signal of unique reads) 77.1 MB
ENCFF113HTD.bigWig bigWig (minus strand signal of unique reads) 63.4 MB
ENCFF117KSL.bam bam (alignments) 6.2 GB
ENCFF149BDW.tsv tsv (gene quantifications) 9.5 MB
ENCFF154RGV.bigWig bigWig (minus strand signal of all reads) 72.1 MB
ENCFF155BYP.tsv tsv (gene quantifications) 10.4 MB
ENCFF174SBE.bigWig bigWig (minus strand signal of unique reads) 63.9 MB
ENCFF177FEW.bigWig bigWig (minus strand signal of unique reads) 58.1 MB
ENCFF188SIU.tsv tsv (differential expression quantifications) 2.0 MB
ENCFF191JGU.tsv tsv (transcript quantifications) 27.3 MB
ENCFF193JKW.tsv tsv (transcript quantifications) 27.3 MB
ENCFF221YJC.bigWig bigWig (minus strand signal of unique reads) 63.9 MB
ENCFF225HYE.bigWig bigWig (plus strand signal of unique reads) 65.7 MB
ENCFF243MHI.fastq fastq (reads) 3.4 GB
ENCFF247NVR.bigWig bigWig (minus strand signal of unique reads) 76.7 MB
ENCFF251JMM.bigWig bigWig (minus strand signal of unique reads) 70.9 MB
ENCFF263MSU.bam bam (alignments) 5.0 GB
ENCFF273BBE.bigWig bigWig (minus strand signal of all reads) 74.9 MB
ENCFF308YIC.bigWig bigWig (plus strand signal of unique reads) 79.1 MB
ENCFF327QQY.bigWig bigWig (plus strand signal of all reads) 73.5 MB
ENCFF327VED.bigWig bigWig (minus strand signal of all reads) 59.9 MB
ENCFF339JHE.bigWig bigWig (plus strand signal of unique reads) 57.2 MB
ENCFF342ARA.bigWig bigWig (plus strand signal of unique reads) 59.2 MB
ENCFF367CAO.tar tar (differential splicing quantifications) 14.8 MB
ENCFF370ZOQ.bam bam (alignments) 5.1 GB
ENCFF374PUC.bigWig bigWig (plus strand signal of all reads) 78.3 MB
ENCFF381EXB.bam bam (transcriptome alignments) 6.9 GB
ENCFF406GYE.bigWig bigWig (plus strand signal of unique reads) 79.5 MB
ENCFF414TVO.tsv tsv (differential expression quantifications) 4.3 MB
ENCFF418NSA.bigWig bigWig (minus strand signal of unique reads) 57.5 MB
ENCFF418YWM.bigWig bigWig (minus strand signal of unique reads) 70.3 MB
ENCFF429NLY.bigWig bigWig (minus strand signal of all reads) 72.1 MB
ENCFF451JVO.tsv tsv (transcript quantifications) 25.4 MB
ENCFF453XHH.tsv tsv (transcript quantifications) 25.0 MB
ENCFF463RZF.bam bam (alignments) 6.2 GB
ENCFF473YXY.bigWig bigWig (plus strand signal of all reads) 88.7 MB
ENCFF488ODH.bigWig bigWig (plus strand signal of all reads) 87.5 MB
ENCFF491QPG.bigWig bigWig (minus strand signal of all reads) 85.8 MB
ENCFF502YSF.bigWig bigWig (plus strand signal of unique reads) 72.4 MB
ENCFF513IDK.bigWig bigWig (minus strand signal of unique reads) 55.4 MB
ENCFF529ESP.fastq fastq (reads) 3.4 GB
ENCFF552GUR.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF558WBU.tar tar (differential splicing quantifications) 2.9 MB
ENCFF563IFM.bam bam (transcriptome alignments) 6.0 GB
ENCFF564TWX.bigWig bigWig (plus strand signal of unique reads) 70.1 MB
ENCFF566RIP.bam bam (alignments) 4.6 GB
ENCFF573WYT.fastq fastq (reads) 3.1 GB
ENCFF603SLB.tsv tsv (gene quantifications) 10.4 MB
ENCFF609YEL.bigWig bigWig (plus strand signal of all reads) 61.3 MB
ENCFF642MRD.tar tar (differential splicing quantifications) 3.7 MB
ENCFF643WWA.tsv tsv (transcript quantifications) 29.9 MB
ENCFF649XCM.bigWig bigWig (plus strand signal of unique reads) 79.3 MB
ENCFF660NRR.tsv tsv (transcript quantifications) 29.9 MB
ENCFF697TKU.bam bam (alignments) 5.5 GB
ENCFF699CXV.bam bam (alignments) 5.9 GB
ENCFF705VFF.tsv tsv (gene quantifications) 9.1 MB
ENCFF715VSC.bam bam (alignments) 4.6 GB
ENCFF725AZK.bigWig bigWig (plus strand signal of unique reads) 59.6 MB
ENCFF748NRY.bam bam (alignments) 4.6 GB
ENCFF761AIG.bam bam (alignments) 5.0 GB
ENCFF764BSM.bigWig bigWig (plus strand signal of all reads) 76.6 MB
ENCFF770JJF.bigWig bigWig (plus strand signal of all reads) 63.2 MB
ENCFF784YST.bigWig bigWig (plus strand signal of all reads) 73.5 MB
ENCFF787WMU.bigWig bigWig (plus strand signal of unique reads) 65.7 MB
ENCFF797JSF.bigWig bigWig (plus strand signal of all reads) 75.0 MB
ENCFF812RXC.bigWig bigWig (minus strand signal of all reads) 61.9 MB
ENCFF815BSI.bam bam (transcriptome alignments) 7.8 GB
ENCFF825DFV.bam bam (transcriptome alignments) 6.9 GB
ENCFF853VPZ.bigWig bigWig (minus strand signal of all reads) 73.1 MB
ENCFF868LDA.bigWig bigWig (minus strand signal of all reads) 86.9 MB
ENCFF873CVQ.bigWig bigWig (minus strand signal of all reads) 71.5 MB
ENCFF885FRH.bigWig bigWig (minus strand signal of all reads) 63.3 MB
ENCFF896XVO.tsv tsv (gene quantifications) 9.1 MB
ENCFF909SCM.tsv tsv (transcript quantifications) 25.0 MB
ENCFF921HVV.bigWig bigWig (plus strand signal of unique reads) 73.1 MB
ENCFF939ELG.bigWig bigWig (minus strand signal of all reads) 86.9 MB
ENCFF943JPB.bam bam (alignments) 5.4 GB
ENCFF944IWR.tsv tsv (differential expression quantifications) 2.8 MB
ENCFF944KPV.bigWig bigWig (plus strand signal of all reads) 64.7 MB
ENCFF971BHP.bigWig bigWig (minus strand signal of unique reads) 77.0 MB
ENCFF975KFE.bigWig bigWig (minus strand signal of unique reads) 67.8 MB
ENCFF996LTS.fastq fastq (reads) 3.1 GB
ENCSR871BXO ENCSR · via encode_api

RNA-seq on HepG2 cells treated with an shRNA knockdown against STIP1. (STIP1-BGHLV22)

Homo sapiens

92 data files
FileTypeSize
ENCFF012NBX.bigWig bigWig (plus strand signal of all reads) 79.1 MB
ENCFF016GRD.bigWig bigWig (minus strand signal of unique reads) 69.7 MB
ENCFF037SWY.tsv tsv (transcript quantifications) 24.9 MB
ENCFF039DJL.bigWig bigWig (minus strand signal of unique reads) 66.4 MB
ENCFF040TRI.bigWig bigWig (minus strand signal of all reads) 74.3 MB
ENCFF057QLN.bigWig bigWig (plus strand signal of all reads) 71.9 MB
ENCFF063FGR.bigWig bigWig (plus strand signal of unique reads) 64.4 MB
ENCFF077SNT.tar tar (differential splicing quantifications) 3.6 MB
ENCFF094ADB.tsv tsv (gene quantifications) 9.1 MB
ENCFF124SHB.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF126ZCQ.bam bam (alignments) 4.1 GB
ENCFF127WUR.bigWig bigWig (minus strand signal of unique reads) 66.0 MB
ENCFF132LSH.bam bam (alignments) 3.6 GB
ENCFF138BNX.tar tar (differential splicing quantifications) 3.0 MB
ENCFF167BKF.fastq fastq (reads) 2.3 GB
ENCFF181CND.fastq fastq (reads) 2.2 GB
ENCFF186ZNF.bam bam (alignments) 4.3 GB
ENCFF195DIR.bigWig bigWig (minus strand signal of unique reads) 65.9 MB
ENCFF202BFL.tsv tsv (gene quantifications) 9.4 MB
ENCFF232DCZ.tsv tsv (differential expression quantifications) 4.2 MB
ENCFF235EXX.bigWig bigWig (minus strand signal of unique reads) 63.0 MB
ENCFF254CKE.tsv tsv (transcript quantifications) 27.3 MB
ENCFF255YWR.bigWig bigWig (plus strand signal of unique reads) 67.5 MB
ENCFF259GXF.bigWig bigWig (plus strand signal of unique reads) 71.1 MB
ENCFF263ZGI.bam bam (transcriptome alignments) 5.0 GB
ENCFF268WID.bam bam (alignments) 3.6 GB
ENCFF274KYY.tsv tsv (gene quantifications) 9.4 MB
ENCFF280YXV.bam bam (transcriptome alignments) 4.9 GB
ENCFF319UOU.bigWig bigWig (minus strand signal of unique reads) 63.5 MB
ENCFF321ADL.tsv tsv (transcript quantifications) 24.9 MB
ENCFF326QZJ.bigWig bigWig (minus strand signal of all reads) 78.1 MB
ENCFF328WSJ.bigWig bigWig (minus strand signal of all reads) 70.8 MB
ENCFF334KRO.bigWig bigWig (plus strand signal of all reads) 78.8 MB
ENCFF335YVW.bam bam (alignments) 3.5 GB
ENCFF353TLO.bam bam (alignments) 3.4 GB
ENCFF359EJW.bigWig bigWig (plus strand signal of unique reads) 62.3 MB
ENCFF368CZG.bigWig bigWig (plus strand signal of unique reads) 67.9 MB
ENCFF395XQG.bigWig bigWig (minus strand signal of all reads) 68.3 MB
ENCFF428OIY.fastq fastq (reads) 2.1 GB
ENCFF447JOG.bigWig bigWig (plus strand signal of unique reads) 67.5 MB
ENCFF447RJI.bam bam (transcriptome alignments) 5.4 GB
ENCFF459GHC.tsv tsv (transcript quantifications) 27.3 MB
ENCFF473WDA.bigWig bigWig (plus strand signal of all reads) 75.4 MB
ENCFF504JGG.bam bam (alignments) 4.2 GB
ENCFF505NSB.bigWig bigWig (plus strand signal of unique reads) 67.4 MB
ENCFF516BGQ.bigWig bigWig (minus strand signal of unique reads) 66.6 MB
ENCFF521QTM.bigWig bigWig (plus strand signal of unique reads) 65.2 MB
ENCFF528FZU.bigWig bigWig (minus strand signal of all reads) 78.1 MB
ENCFF530XXR.bigWig bigWig (plus strand signal of all reads) 79.2 MB
ENCFF535BFV.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF543MTJ.bigWig bigWig (minus strand signal of unique reads) 69.6 MB
ENCFF550MXJ.bigWig bigWig (plus strand signal of all reads) 68.8 MB
ENCFF559EZX.bam bam (alignments) 3.7 GB
ENCFF562CPJ.bam bam (alignments) 3.4 GB
ENCFF581BJF.bigWig bigWig (plus strand signal of unique reads) 68.2 MB
ENCFF587COQ.bigWig bigWig (plus strand signal of unique reads) 63.9 MB
ENCFF588WGN.tsv tsv (transcript quantifications) 29.8 MB
ENCFF596MHW.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF608WDW.bam bam (alignments) 4.0 GB
ENCFF609VED.fastq fastq (reads) 2.2 GB
ENCFF612ICA.bigWig bigWig (minus strand signal of all reads) 70.3 MB
ENCFF615PYU.tsv tsv (gene quantifications) 10.4 MB
ENCFF641OYB.bam bam (alignments) 4.3 GB
ENCFF648KTZ.bigWig bigWig (plus strand signal of all reads) 71.2 MB
ENCFF648PIQ.bigWig bigWig (minus strand signal of unique reads) 66.2 MB
ENCFF664QPJ.bigWig bigWig (plus strand signal of all reads) 75.4 MB
ENCFF668ESB.bigWig bigWig (minus strand signal of all reads) 66.5 MB
ENCFF669NXI.bigWig bigWig (minus strand signal of all reads) 73.2 MB
ENCFF669QEV.bigWig bigWig (minus strand signal of unique reads) 60.8 MB
ENCFF678DWB.bigWig bigWig (plus strand signal of unique reads) 71.5 MB
ENCFF697ZMI.bigWig bigWig (plus strand signal of all reads) 74.1 MB
ENCFF697ZRB.tsv tsv (gene quantifications) 10.4 MB
ENCFF705UEJ.bigWig bigWig (minus strand signal of unique reads) 62.6 MB
ENCFF712LTI.bigWig bigWig (plus strand signal of unique reads) 71.2 MB
ENCFF714YBC.tsv tsv (gene quantifications) 9.1 MB
ENCFF720MRJ.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF728RWC.bam bam (alignments) 4.1 GB
ENCFF731IEG.bigWig bigWig (minus strand signal of all reads) 77.9 MB
ENCFF736FIK.bigWig bigWig (minus strand signal of all reads) 64.9 MB
ENCFF761TAT.bigWig bigWig (plus strand signal of all reads) 66.0 MB
ENCFF810EBV.bigWig bigWig (minus strand signal of all reads) 67.7 MB
ENCFF822CTE.bigWig bigWig (plus strand signal of all reads) 69.4 MB
ENCFF827HSZ.bigWig bigWig (minus strand signal of unique reads) 69.9 MB
ENCFF855UNA.bam bam (transcriptome alignments) 5.0 GB
ENCFF863ARJ.tar tar (differential splicing quantifications) 15.2 MB
ENCFF881GXW.tsv tsv (transcript quantifications) 29.8 MB
ENCFF884VCH.tsv tsv (transcript quantifications) 25.3 MB
ENCFF896JFA.bam bam (transcriptome alignments) 5.6 GB
ENCFF897PFN.bigWig bigWig (minus strand signal of all reads) 74.3 MB
ENCFF945CSQ.bam bam (transcriptome alignments) 4.8 GB
ENCFF962GXH.bigWig bigWig (plus strand signal of all reads) 67.4 MB
ENCFF985DQA.tsv tsv (transcript quantifications) 25.3 MB
ENCSR656DQV ENCSR · via encode_api

shRNA knockdown against PKM2 in HepG2 cells followed by RNA-seq. (PKM2_BGHLV16)

Homo sapiens

92 data files
FileTypeSize
ENCFF023BEY.bigWig bigWig (minus strand signal of unique reads) 48.5 MB
ENCFF025FSX.bam bam (alignments) 2.5 GB
ENCFF038AST.bigWig bigWig (minus strand signal of all reads) 57.3 MB
ENCFF040UVN.bigWig bigWig (plus strand signal of all reads) 58.6 MB
ENCFF041BSV.bigWig bigWig (minus strand signal of unique reads) 49.0 MB
ENCFF063EOV.bigWig bigWig (plus strand signal of unique reads) 55.6 MB
ENCFF079EVA.bigWig bigWig (minus strand signal of unique reads) 54.3 MB
ENCFF094XMS.bigWig bigWig (plus strand signal of all reads) 61.8 MB
ENCFF095EHQ.tsv tsv (gene quantifications) 9.4 MB
ENCFF106IOF.bigWig bigWig (minus strand signal of unique reads) 51.8 MB
ENCFF122TBL.tsv tsv (differential expression quantifications) 2.8 MB
ENCFF146VTO.bigWig bigWig (plus strand signal of all reads) 58.5 MB
ENCFF159GYM.bam bam (transcriptome alignments) 3.9 GB
ENCFF159YJC.bigWig bigWig (plus strand signal of unique reads) 53.6 MB
ENCFF164FNO.bam bam (transcriptome alignments) 3.7 GB
ENCFF169BRA.bigWig bigWig (minus strand signal of all reads) 53.8 MB
ENCFF172MJL.bigWig bigWig (plus strand signal of all reads) 54.0 MB
ENCFF186IEL.bigWig bigWig (minus strand signal of unique reads) 46.7 MB
ENCFF209RHL.tsv tsv (gene quantifications) 9.1 MB
ENCFF218NAN.bigWig bigWig (minus strand signal of all reads) 57.6 MB
ENCFF218RNH.bigWig bigWig (plus strand signal of all reads) 58.5 MB
ENCFF249PUC.bam bam (alignments) 3.0 GB
ENCFF257AOW.bigWig bigWig (minus strand signal of unique reads) 50.5 MB
ENCFF267FOO.bam bam (transcriptome alignments) 3.5 GB
ENCFF273QVP.bigWig bigWig (minus strand signal of all reads) 49.7 MB
ENCFF283TLS.bam bam (alignments) 2.8 GB
ENCFF285ZYK.bigWig bigWig (minus strand signal of all reads) 52.9 MB
ENCFF307EAT.bigWig bigWig (plus strand signal of all reads) 61.7 MB
ENCFF310BMQ.bigWig bigWig (minus strand signal of unique reads) 54.0 MB
ENCFF325ZGJ.bigWig bigWig (plus strand signal of all reads) 55.8 MB
ENCFF332VMP.bigWig bigWig (plus strand signal of unique reads) 55.9 MB
ENCFF349XKA.tsv tsv (differential expression quantifications) 5.5 MB
ENCFF387HMK.tsv tsv (gene quantifications) 9.4 MB
ENCFF413VFC.bigWig bigWig (minus strand signal of all reads) 52.3 MB
ENCFF424TEQ.fastq fastq (reads) 1.7 GB
ENCFF429CZL.bigWig bigWig (minus strand signal of all reads) 60.5 MB
ENCFF437SFJ.bigWig bigWig (minus strand signal of all reads) 59.7 MB
ENCFF444MFG.tar tar (differential splicing quantifications) 13.0 MB
ENCFF459GYE.bam bam (alignments) 3.0 GB
ENCFF461GAS.fastq fastq (reads) 1.5 GB
ENCFF474EDD.bam bam (alignments) 2.8 GB
ENCFF479LAM.bigWig bigWig (minus strand signal of unique reads) 50.9 MB
ENCFF506HGA.bigWig bigWig (minus strand signal of unique reads) 49.0 MB
ENCFF545LUG.bigWig bigWig (plus strand signal of unique reads) 48.1 MB
ENCFF556NSH.bam bam (alignments) 2.4 GB
ENCFF567TOM.bam bam (transcriptome alignments) 3.5 GB
ENCFF583XEH.tsv tsv (transcript quantifications) 29.8 MB
ENCFF585QJV.bigWig bigWig (plus strand signal of unique reads) 50.0 MB
ENCFF589VLW.bigWig bigWig (plus strand signal of unique reads) 53.2 MB
ENCFF615XIN.bigWig bigWig (plus strand signal of unique reads) 52.3 MB
ENCFF617SLZ.bam bam (alignments) 2.5 GB
ENCFF619YQQ.tar tar (differential splicing quantifications) 2.7 MB
ENCFF636WIY.bigWig bigWig (minus strand signal of all reads) 60.5 MB
ENCFF653JRQ.tsv tsv (gene quantifications) 10.4 MB
ENCFF655IFV.bigWig bigWig (minus strand signal of unique reads) 51.4 MB
ENCFF658PZD.bam bam (alignments) 2.5 GB
ENCFF662XNN.bam bam (alignments) 3.0 GB
ENCFF664KBN.tsv tsv (transcript quantifications) 25.3 MB
ENCFF670ZOX.bigWig bigWig (plus strand signal of all reads) 53.5 MB
ENCFF683WZW.bigWig bigWig (plus strand signal of all reads) 52.8 MB
ENCFF707XLL.tsv tsv (gene quantifications) 9.1 MB
ENCFF720NTT.bigWig bigWig (minus strand signal of unique reads) 54.4 MB
ENCFF743PBZ.bam bam (transcriptome alignments) 4.2 GB
ENCFF747RMM.bam bam (alignments) 2.8 GB
ENCFF750WPJ.bigWig bigWig (minus strand signal of all reads) 51.7 MB
ENCFF753AJO.bam bam (transcriptome alignments) 3.7 GB
ENCFF762IBZ.bigWig bigWig (minus strand signal of all reads) 54.6 MB
ENCFF766GDR.bigWig bigWig (plus strand signal of unique reads) 50.4 MB
ENCFF793RTI.tsv tsv (transcript quantifications) 24.9 MB
ENCFF799SIM.bigWig bigWig (plus strand signal of all reads) 50.8 MB
ENCFF821UZD.bam bam (alignments) 2.4 GB
ENCFF825HOB.bigWig bigWig (plus strand signal of unique reads) 50.3 MB
ENCFF834UYZ.tsv tsv (transcript quantifications) 27.2 MB
ENCFF869LCR.tsv tsv (transcript quantifications) 24.9 MB
ENCFF881QIF.bigWig bigWig (minus strand signal of all reads) 57.3 MB
ENCFF892AED.bigWig bigWig (plus strand signal of unique reads) 52.8 MB
ENCFF900FSP.tsv tsv (transcript quantifications) 25.3 MB
ENCFF903PDQ.bigWig bigWig (plus strand signal of unique reads) 51.8 MB
ENCFF906UJE.tsv tsv (differential expression quantifications) 4.1 MB
ENCFF931QIC.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF931TPY.bigWig bigWig (plus strand signal of all reads) 60.8 MB
ENCFF939XTC.tsv tsv (differential expression quantifications) 1.8 MB
ENCFF951BIX.tsv tsv (transcript quantifications) 27.2 MB
ENCFF957MHG.tsv tsv (gene quantifications) 10.4 MB
ENCFF961CLP.fastq fastq (reads) 1.6 GB
ENCFF962DWG.bigWig bigWig (minus strand signal of unique reads) 52.1 MB
ENCFF963VDL.bigWig bigWig (plus strand signal of unique reads) 55.8 MB
ENCFF966ABL.bam bam (alignments) 2.4 GB
ENCFF968UER.fastq fastq (reads) 1.6 GB
ENCFF986IQC.tar tar (differential splicing quantifications) 3.0 MB
ENCFF989GTS.bigWig bigWig (plus strand signal of all reads) 54.9 MB
ENCFF996AIH.tsv tsv (transcript quantifications) 29.8 MB
ENCSR210RWL ENCSR · via encode_api

shRNA knockdown against DDX27 in HepG2 cells followed by RNA-seq. (DDX27_BGHLV17)

Homo sapiens

120 data files
FileTypeSize
ENCFF024ZDG.bigWig bigWig (minus strand signal of all reads) 100.1 MB
ENCFF025NVB.bigWig bigWig (plus strand signal of all reads) 86.4 MB
ENCFF026FDK.bigWig bigWig (minus strand signal of unique reads) 79.2 MB
ENCFF058PCM.bigWig bigWig (plus strand signal of all reads) 111.8 MB
ENCFF064GET.tsv tsv (gene quantifications) 9.1 MB
ENCFF065NVM.bigWig bigWig (plus strand signal of unique reads) 57.9 MB
ENCFF068IJE.fastq fastq (reads) 753.4 MB
ENCFF075RUS.bam bam (alignments) 3.1 GB
ENCFF079VIP.tsv tsv (transcript quantifications) 25.3 MB
ENCFF081CXJ.tsv tsv (differential expression quantifications) 2.8 MB
ENCFF101AYO.bigWig bigWig (minus strand signal of all reads) 109.9 MB
ENCFF102MFW.bigWig bigWig (minus strand signal of all reads) 59.2 MB
ENCFF118JDY.bigWig bigWig (plus strand signal of unique reads) 81.2 MB
ENCFF134YEQ.bigWig bigWig (minus strand signal of unique reads) 92.7 MB
ENCFF135CPK.bigWig bigWig (minus strand signal of unique reads) 55.5 MB
ENCFF136DWG.bigWig bigWig (plus strand signal of all reads) 102.1 MB
ENCFF144BPC.bigWig bigWig (minus strand signal of unique reads) 82.7 MB
ENCFF148KVU.bigWig bigWig (plus strand signal of unique reads) 60.6 MB
ENCFF160DFJ.bigWig bigWig (plus strand signal of unique reads) 101.8 MB
ENCFF165MOJ.bigWig bigWig (minus strand signal of all reads) 65.0 MB
ENCFF173ZFV.bigWig bigWig (plus strand signal of all reads) 93.0 MB
ENCFF177FDV.bigWig bigWig (plus strand signal of all reads) 66.3 MB
ENCFF178IXX.bigWig bigWig (minus strand signal of all reads) 91.7 MB
ENCFF201JSA.tsv tsv (transcript quantifications) 24.9 MB
ENCFF210PWB.bam bam (alignments) 7.9 GB
ENCFF210ZWG.bigWig bigWig (minus strand signal of all reads) 65.1 MB
ENCFF213GFP.bigWig bigWig (minus strand signal of unique reads) 99.2 MB
ENCFF235FCA.bigWig bigWig (plus strand signal of all reads) 35.1 MB
ENCFF237RFJ.bigWig bigWig (plus strand signal of all reads) 66.1 MB
ENCFF239PPV.bigWig bigWig (minus strand signal of all reads) 57.3 MB
ENCFF250EQK.tsv tsv (differential expression quantifications) 4.2 MB
ENCFF255YZK.bigWig bigWig (plus strand signal of all reads) 94.1 MB
ENCFF265DIN.tar tar (differential splicing quantifications) 15.8 MB
ENCFF265RYO.fastq fastq (reads) 1.7 GB
ENCFF266MNR.bam bam (transcriptome alignments) 9.7 GB
ENCFF267RRY.bigWig bigWig (minus strand signal of all reads) 109.8 MB
ENCFF309EDJ.bigWig bigWig (minus strand signal of unique reads) 78.8 MB
ENCFF310GVB.bigWig bigWig (minus strand signal of all reads) 84.8 MB
ENCFF311KIP.bam bam (transcriptome alignments) 3.8 GB
ENCFF311UBJ.tsv tsv (gene quantifications) 9.1 MB
ENCFF315QWT.bigWig bigWig (minus strand signal of unique reads) 82.9 MB
ENCFF322VHP.bam bam (alignments) 4.2 GB
ENCFF335RGI.bigWig bigWig (minus strand signal of unique reads) 56.4 MB
ENCFF344RFG.tsv tsv (transcript quantifications) 29.7 MB
ENCFF368VPU.bigWig bigWig (plus strand signal of unique reads) 101.8 MB
ENCFF370KEZ.bam bam (transcriptome alignments) 5.2 GB
ENCFF377BJC.bam bam (alignments) 2.5 GB
ENCFF381SKH.bam bam (transcriptome alignments) 4.4 GB
ENCFF398QAB.fastq fastq (reads) 3.5 GB
ENCFF402AVB.bigWig bigWig (plus strand signal of unique reads) 56.8 MB
ENCFF409TTO.tsv tsv (transcript quantifications) 27.5 MB
ENCFF412VPD.bigWig bigWig (plus strand signal of unique reads) 53.9 MB
ENCFF414WJD.bam bam (alignments) 3.0 GB
ENCFF422MTR.bam bam (transcriptome alignments) 9.8 GB
ENCFF428UQJ.bam bam (alignments) 4.1 GB
ENCFF433RJL.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF436UFH.bam bam (transcriptome alignments) 5.3 GB
ENCFF441HTO.bigWig bigWig (plus strand signal of unique reads) 60.6 MB
ENCFF442APZ.bam bam (alignments) 8.1 GB
ENCFF447HGE.bigWig bigWig (plus strand signal of all reads) 84.5 MB
ENCFF456SZS.bam bam (alignments) 6.6 GB
ENCFF468YWZ.tsv tsv (gene quantifications) 10.4 MB
ENCFF477PSY.bigWig bigWig (minus strand signal of all reads) 65.1 MB
ENCFF492NHB.bam bam (alignments) 3.4 GB
ENCFF494AEW.bigWig bigWig (plus strand signal of all reads) 100.8 MB
ENCFF495SBM.bam bam (alignments) 2.5 GB
ENCFF496LPH.tar tar (differential splicing quantifications) 3.4 MB
ENCFF504KUP.tsv tsv (gene quantifications) 10.4 MB
ENCFF531RHC.bigWig bigWig (plus strand signal of unique reads) 60.0 MB
ENCFF543FMU.bigWig bigWig (minus strand signal of unique reads) 92.7 MB
ENCFF554LIG.fastq fastq (reads) 1.6 GB
ENCFF563JLU.tsv tsv (transcript quantifications) 27.3 MB
ENCFF569TDY.bigWig bigWig (plus strand signal of unique reads) 95.2 MB
ENCFF574NMM.tsv tsv (differential expression quantifications) 1.8 MB
ENCFF578VID.bam bam (alignments) 2.6 GB
ENCFF590TCC.bigWig bigWig (minus strand signal of unique reads) 59.1 MB
ENCFF596IEX.bigWig bigWig (minus strand signal of all reads) 60.0 MB
ENCFF605XBU.bigWig bigWig (plus strand signal of all reads) 61.1 MB
ENCFF606FUD.tsv tsv (transcript quantifications) 24.9 MB
ENCFF630PXG.tsv tsv (transcript quantifications) 29.8 MB
ENCFF632QIX.bigWig bigWig (minus strand signal of all reads) 83.4 MB
ENCFF634DKT.bigWig bigWig (minus strand signal of unique reads) 59.1 MB
ENCFF634OPB.bigWig bigWig (minus strand signal of unique reads) 99.2 MB
ENCFF635IEG.tsv tsv (transcript quantifications) 25.3 MB
ENCFF637KJA.bigWig bigWig (plus strand signal of all reads) 60.3 MB
ENCFF637WNE.bigWig bigWig (plus strand signal of unique reads) 80.5 MB
ENCFF644GIM.bigWig bigWig (minus strand signal of all reads) 109.5 MB
ENCFF648IWB.bam bam (transcriptome alignments) 11.0 GB
ENCFF650TFD.bigWig bigWig (minus strand signal of all reads) 98.9 MB
ENCFF651GGI.bam bam (transcriptome alignments) 3.9 GB
ENCFF659HBO.tsv tsv (gene quantifications) 9.4 MB
ENCFF674KYO.bigWig bigWig (plus strand signal of unique reads) 33.0 MB
ENCFF679KDH.tar tar (differential splicing quantifications) 4.2 MB
ENCFF687IGC.bigWig bigWig (plus strand signal of unique reads) 101.8 MB
ENCFF708GJR.tsv tsv (transcript quantifications) 25.3 MB
ENCFF714ORU.tsv tsv (gene quantifications) 9.1 MB
ENCFF729FFG.bam bam (alignments) 6.8 GB
ENCFF741YIT.bigWig bigWig (minus strand signal of unique reads) 32.2 MB
ENCFF746HLJ.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF751QOT.bam bam (alignments) 3.4 GB
ENCFF754YET.bam bam (alignments) 1.1 GB
ENCFF770ZXB.fastq fastq (reads) 733.3 MB
ENCFF809ZDB.bigWig bigWig (plus strand signal of all reads) 111.7 MB
ENCFF813KAN.bigWig bigWig (plus strand signal of unique reads) 95.1 MB
ENCFF821XER.bam bam (alignments) 8.1 GB
ENCFF846GFG.bigWig bigWig (minus strand signal of unique reads) 99.1 MB
ENCFF850YSY.fastq fastq (reads) 3.6 GB
ENCFF881DEE.bigWig bigWig (plus strand signal of all reads) 66.2 MB
ENCFF893LMF.bigWig bigWig (plus strand signal of all reads) 111.2 MB
ENCFF896ABQ.bigWig bigWig (plus strand signal of unique reads) 84.8 MB
ENCFF897CGE.bigWig bigWig (minus strand signal of unique reads) 52.4 MB
ENCFF911FPZ.bigWig bigWig (minus strand signal of unique reads) 58.5 MB
ENCFF940UZF.tsv tsv (transcript quantifications) 24.9 MB
ENCFF945RML.bigWig bigWig (plus strand signal of unique reads) 84.8 MB
ENCFF950YSU.bigWig bigWig (plus strand signal of all reads) 58.4 MB
ENCFF969IDX.bam bam (alignments) 3.1 GB
ENCFF974XKK.tsv tsv (gene quantifications) 9.5 MB
ENCFF981HNJ.bigWig bigWig (minus strand signal of all reads) 34.4 MB
ENCFF983GPF.tsv tsv (gene quantifications) 9.4 MB
ENCFF998SJB.bigWig bigWig (minus strand signal of all reads) 92.9 MB
ENCSR605MFS ENCSR · via encode_api

RNA-seq on K562 cells treated with an shRNA knockdown against CUGBP1. (CUGBP1_BGKLV25)

Homo sapiens

92 data files
FileTypeSize
ENCFF003TIA.tsv tsv (differential expression quantifications) 5.7 MB
ENCFF043USC.fastq fastq (reads) 6.7 GB
ENCFF083XFS.bigWig bigWig (plus strand signal of all reads) 148.1 MB
ENCFF088AGE.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF089WOL.bam bam (alignments) 14.3 GB
ENCFF093FRS.bigWig bigWig (minus strand signal of all reads) 156.3 MB
ENCFF100HQC.bigWig bigWig (plus strand signal of unique reads) 161.1 MB
ENCFF118JRL.bam bam (alignments) 12.7 GB
ENCFF128FYV.bam bam (transcriptome alignments) 13.5 GB
ENCFF145EFD.tsv tsv (transcript quantifications) 25.0 MB
ENCFF154MMF.bam bam (alignments) 10.3 GB
ENCFF158TUE.fastq fastq (reads) 7.5 GB
ENCFF161LUA.bam bam (alignments) 14.7 GB
ENCFF183UOJ.bigWig bigWig (plus strand signal of all reads) 181.5 MB
ENCFF183YMS.bam bam (transcriptome alignments) 15.9 GB
ENCFF209EGI.tsv tsv (gene quantifications) 9.5 MB
ENCFF216CIV.bigWig bigWig (minus strand signal of all reads) 179.2 MB
ENCFF218DHP.bigWig bigWig (plus strand signal of all reads) 168.0 MB
ENCFF226QGQ.bigWig bigWig (minus strand signal of unique reads) 142.1 MB
ENCFF255YSR.tsv tsv (differential expression quantifications) 2.0 MB
ENCFF262XDW.tsv tsv (gene quantifications) 9.1 MB
ENCFF268OIB.bigWig bigWig (minus strand signal of all reads) 167.1 MB
ENCFF298TEQ.bigWig bigWig (plus strand signal of all reads) 160.7 MB
ENCFF306ZQS.bigWig bigWig (minus strand signal of unique reads) 148.2 MB
ENCFF310JXY.bigWig bigWig (plus strand signal of unique reads) 137.1 MB
ENCFF313NGI.bigWig bigWig (plus strand signal of unique reads) 149.8 MB
ENCFF329EQW.bigWig bigWig (minus strand signal of all reads) 155.1 MB
ENCFF329TZG.bam bam (alignments) 11.9 GB
ENCFF329UFE.bigWig bigWig (minus strand signal of unique reads) 135.7 MB
ENCFF363DRT.bigWig bigWig (plus strand signal of unique reads) 162.0 MB
ENCFF363MZG.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF410IFR.bigWig bigWig (plus strand signal of unique reads) 138.5 MB
ENCFF424CNQ.bigWig bigWig (minus strand signal of all reads) 167.1 MB
ENCFF426MGX.tsv tsv (transcript quantifications) 25.4 MB
ENCFF449KBH.bigWig bigWig (minus strand signal of all reads) 145.5 MB
ENCFF449PVT.bigWig bigWig (plus strand signal of all reads) 158.0 MB
ENCFF453PVB.bigWig bigWig (plus strand signal of all reads) 147.8 MB
ENCFF455VXD.bigWig bigWig (plus strand signal of all reads) 168.9 MB
ENCFF458TTV.tar tar (differential splicing quantifications) 5.8 MB
ENCFF463RQB.fastq fastq (reads) 6.5 GB
ENCFF465WYQ.bigWig bigWig (plus strand signal of unique reads) 140.0 MB
ENCFF465ZPL.bigWig bigWig (plus strand signal of unique reads) 145.9 MB
ENCFF473NGN.tar tar (differential splicing quantifications) 19.0 MB
ENCFF483GBW.bam bam (alignments) 12.1 GB
ENCFF483JAT.tsv tsv (transcript quantifications) 29.9 MB
ENCFF484IQK.bigWig bigWig (plus strand signal of all reads) 152.2 MB
ENCFF486WON.bigWig bigWig (minus strand signal of unique reads) 157.3 MB
ENCFF490JJI.bam bam (alignments) 11.9 GB
ENCFF499FGS.bigWig bigWig (plus strand signal of unique reads) 161.9 MB
ENCFF509FGV.tar tar (differential splicing quantifications) 7.6 MB
ENCFF513IHM.bam bam (transcriptome alignments) 15.3 GB
ENCFF586NHQ.bigWig bigWig (minus strand signal of all reads) 179.1 MB
ENCFF602TQU.bigWig bigWig (minus strand signal of unique reads) 146.9 MB
ENCFF605HED.bigWig bigWig (minus strand signal of all reads) 157.9 MB
ENCFF622KHZ.tsv tsv (transcript quantifications) 27.6 MB
ENCFF636VST.bigWig bigWig (minus strand signal of unique reads) 148.4 MB
ENCFF647WGO.bigWig bigWig (minus strand signal of unique reads) 136.7 MB
ENCFF651NKP.bigWig bigWig (plus strand signal of unique reads) 148.3 MB
ENCFF668UHK.bigWig bigWig (plus strand signal of unique reads) 150.7 MB
ENCFF671IDE.tsv tsv (differential expression quantifications) 4.6 MB
ENCFF676SBB.bigWig bigWig (minus strand signal of all reads) 176.1 MB
ENCFF682RCJ.tsv tsv (transcript quantifications) 25.4 MB
ENCFF687SOG.tsv tsv (transcript quantifications) 29.9 MB
ENCFF701MTX.bam bam (alignments) 12.7 GB
ENCFF704ENF.bigWig bigWig (plus strand signal of all reads) 181.3 MB
ENCFF706IFS.bam bam (alignments) 10.4 GB
ENCFF709VUN.tsv tsv (transcript quantifications) 24.9 MB
ENCFF713DJP.bigWig bigWig (plus strand signal of all reads) 168.9 MB
ENCFF745GHI.tsv tsv (transcript quantifications) 27.6 MB
ENCFF773EWO.tsv tsv (gene quantifications) 10.4 MB
ENCFF773XWC.bigWig bigWig (plus strand signal of unique reads) 151.5 MB
ENCFF779KHB.bam bam (alignments) 14.7 GB
ENCFF780FUK.bigWig bigWig (minus strand signal of unique reads) 158.2 MB
ENCFF781CLP.bigWig bigWig (minus strand signal of all reads) 146.2 MB
ENCFF803EKF.bam bam (transcriptome alignments) 17.8 GB
ENCFF807XPZ.bigWig bigWig (plus strand signal of unique reads) 151.7 MB
ENCFF812OET.bigWig bigWig (minus strand signal of unique reads) 146.2 MB
ENCFF814DST.bigWig bigWig (plus strand signal of all reads) 178.5 MB
ENCFF823JMW.bigWig bigWig (minus strand signal of unique reads) 145.1 MB
ENCFF838JUR.bigWig bigWig (minus strand signal of all reads) 149.8 MB
ENCFF840HOC.tsv tsv (gene quantifications) 9.5 MB
ENCFF857NBH.bam bam (alignments) 12.3 GB
ENCFF865KTQ.tsv tsv (gene quantifications) 10.4 MB
ENCFF876LCQ.bigWig bigWig (plus strand signal of all reads) 158.2 MB
ENCFF887HBY.bigWig bigWig (minus strand signal of unique reads) 157.8 MB
ENCFF891ZDO.bigWig bigWig (minus strand signal of all reads) 166.0 MB
ENCFF893PKE.bam bam (alignments) 10.2 GB
ENCFF896XME.tsv tsv (gene quantifications) 9.1 MB
ENCFF920WJX.bam bam (transcriptome alignments) 13.6 GB
ENCFF944CSS.fastq fastq (reads) 7.7 GB
ENCFF968FIG.bam bam (transcriptome alignments) 15.7 GB
ENCFF983GFJ.bigWig bigWig (minus strand signal of unique reads) 133.5 MB
ENCSR713OLV ENCSR · via encode_api

RNA-seq on HepG2 cells treated with an shRNA knockdown against ATP5C1. (ATP5C1_BGHLV30)

Homo sapiens

92 data files
FileTypeSize
ENCFF009EDN.bigWig bigWig (minus strand signal of unique reads) 95.6 MB
ENCFF013VWX.tar tar (differential splicing quantifications) 4.1 MB
ENCFF017XEV.tsv tsv (gene quantifications) 9.5 MB
ENCFF018TYT.bam bam (alignments) 6.3 GB
ENCFF024YGB.bigWig bigWig (plus strand signal of unique reads) 98.3 MB
ENCFF034JMS.tsv tsv (differential expression quantifications) 2.8 MB
ENCFF047EVW.bigWig bigWig (plus strand signal of unique reads) 81.8 MB
ENCFF059DAV.bam bam (alignments) 8.5 GB
ENCFF069ICN.bigWig bigWig (plus strand signal of unique reads) 76.3 MB
ENCFF076RCP.bam bam (alignments) 5.1 GB
ENCFF079WGA.tsv tsv (gene quantifications) 10.4 MB
ENCFF079XWQ.bigWig bigWig (minus strand signal of all reads) 101.7 MB
ENCFF081FXU.bigWig bigWig (plus strand signal of unique reads) 76.4 MB
ENCFF084DFC.bigWig bigWig (plus strand signal of all reads) 117.4 MB
ENCFF090FUG.tsv tsv (gene quantifications) 9.1 MB
ENCFF092RXM.bam bam (transcriptome alignments) 14.4 GB
ENCFF097JQT.tsv tsv (transcript quantifications) 25.0 MB
ENCFF113HIA.bam bam (transcriptome alignments) 8.7 GB
ENCFF118OEQ.bigWig bigWig (plus strand signal of all reads) 104.1 MB
ENCFF120KHG.bam bam (alignments) 6.1 GB
ENCFF125ONJ.bam bam (transcriptome alignments) 7.7 GB
ENCFF148VJM.bigWig bigWig (minus strand signal of unique reads) 74.4 MB
ENCFF157DRY.bigWig bigWig (minus strand signal of all reads) 88.6 MB
ENCFF187LSH.bigWig bigWig (plus strand signal of all reads) 105.3 MB
ENCFF189GFD.fastq fastq (reads) 3.5 GB
ENCFF190VVX.bigWig bigWig (plus strand signal of all reads) 90.1 MB
ENCFF197ZDJ.bigWig bigWig (minus strand signal of unique reads) 79.7 MB
ENCFF211VYX.bigWig bigWig (plus strand signal of unique reads) 81.7 MB
ENCFF216HZS.bigWig bigWig (plus strand signal of all reads) 82.5 MB
ENCFF225HVK.bam bam (transcriptome alignments) 12.8 GB
ENCFF225LPH.tsv tsv (transcript quantifications) 25.4 MB
ENCFF233IJA.bigWig bigWig (plus strand signal of all reads) 80.3 MB
ENCFF255HIN.tar tar (differential splicing quantifications) 16.0 MB
ENCFF265EDU.tar tar (differential splicing quantifications) 3.5 MB
ENCFF280SCR.tsv tsv (transcript quantifications) 25.4 MB
ENCFF298FVK.bigWig bigWig (minus strand signal of all reads) 87.8 MB
ENCFF334BJT.fastq fastq (reads) 5.9 GB
ENCFF357MQK.bigWig bigWig (minus strand signal of all reads) 102.2 MB
ENCFF370FSB.bam bam (transcriptome alignments) 12.7 GB
ENCFF378HGA.bigWig bigWig (minus strand signal of unique reads) 95.0 MB
ENCFF396USH.bigWig bigWig (minus strand signal of unique reads) 94.5 MB
ENCFF397YDD.bigWig bigWig (minus strand signal of all reads) 103.3 MB
ENCFF424VDZ.bigWig bigWig (minus strand signal of all reads) 80.8 MB
ENCFF468UZG.tsv tsv (transcript quantifications) 29.9 MB
ENCFF486WWS.bigWig bigWig (minus strand signal of all reads) 78.9 MB
ENCFF487UAM.bigWig bigWig (plus strand signal of all reads) 115.6 MB
ENCFF539EWF.bigWig bigWig (minus strand signal of all reads) 77.8 MB
ENCFF541SLS.bigWig bigWig (minus strand signal of unique reads) 102.3 MB
ENCFF547FFS.bigWig bigWig (plus strand signal of all reads) 117.4 MB
ENCFF554GZO.bigWig bigWig (plus strand signal of all reads) 89.1 MB
ENCFF571HBQ.bigWig bigWig (minus strand signal of unique reads) 78.8 MB
ENCFF576GVX.bam bam (alignments) 6.3 GB
ENCFF600KGJ.bigWig bigWig (minus strand signal of unique reads) 102.4 MB
ENCFF603SLR.bigWig bigWig (minus strand signal of all reads) 115.3 MB
ENCFF614BJC.tsv tsv (differential expression quantifications) 4.2 MB
ENCFF617QZH.tsv tsv (transcript quantifications) 25.0 MB
ENCFF647UAA.bigWig bigWig (minus strand signal of unique reads) 79.8 MB
ENCFF651BIL.tsv tsv (transcript quantifications) 27.5 MB
ENCFF652MXA.bam bam (alignments) 8.4 GB
ENCFF663ORT.bigWig bigWig (plus strand signal of unique reads) 105.1 MB
ENCFF670UZO.tsv tsv (transcript quantifications) 27.4 MB
ENCFF673ZLL.bigWig bigWig (plus strand signal of unique reads) 105.1 MB
ENCFF690FYP.tsv tsv (gene quantifications) 9.1 MB
ENCFF695BNL.bigWig bigWig (minus strand signal of all reads) 88.6 MB
ENCFF704OYG.bigWig bigWig (plus strand signal of unique reads) 80.9 MB
ENCFF712SJC.bigWig bigWig (plus strand signal of all reads) 79.5 MB
ENCFF712XJL.tsv tsv (transcript quantifications) 29.9 MB
ENCFF740LLW.bigWig bigWig (plus strand signal of unique reads) 74.0 MB
ENCFF740OYT.tsv tsv (gene quantifications) 10.4 MB
ENCFF741NGC.bam bam (alignments) 10.3 GB
ENCFF746OVA.tsv tsv (differential expression quantifications) 2.0 MB
ENCFF764NIQ.bigWig bigWig (plus strand signal of unique reads) 97.4 MB
ENCFF772XKU.tsv tsv (differential expression quantifications) 1.8 MB
ENCFF805CUH.bigWig bigWig (minus strand signal of all reads) 115.4 MB
ENCFF817IOG.bam bam (alignments) 5.1 GB
ENCFF830PUU.bigWig bigWig (plus strand signal of unique reads) 105.0 MB
ENCFF835XDU.bigWig bigWig (plus strand signal of unique reads) 97.4 MB
ENCFF849OVY.bam bam (transcriptome alignments) 7.7 GB
ENCFF865CYF.bigWig bigWig (minus strand signal of unique reads) 102.3 MB
ENCFF872SHY.bigWig bigWig (minus strand signal of unique reads) 74.3 MB
ENCFF895BDK.fastq fastq (reads) 3.6 GB
ENCFF905WNW.bigWig bigWig (plus strand signal of all reads) 90.1 MB
ENCFF917EUJ.bigWig bigWig (minus strand signal of unique reads) 71.9 MB
ENCFF924MNW.bam bam (alignments) 10.0 GB
ENCFF929HOI.bigWig bigWig (minus strand signal of all reads) 113.8 MB
ENCFF933QDD.fastq fastq (reads) 5.8 GB
ENCFF936JJU.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF946DZS.tsv tsv (gene quantifications) 9.5 MB
ENCFF948OAE.bam bam (alignments) 8.4 GB
ENCFF975GRV.bam bam (alignments) 5.2 GB
ENCFF980UOD.bigWig bigWig (plus strand signal of all reads) 103.8 MB
ENCFF982DBJ.bam bam (alignments) 10.3 GB
ENCSR851KEX ENCSR · via encode_api

shRNA knockdown against PPIL4 in HepG2 cells followed by RNA-seq. (PPIL4-BGHLV20)

Homo sapiens

92 data files
FileTypeSize
ENCFF014FVB.bam bam (alignments) 4.2 GB
ENCFF024VDU.bigWig bigWig (plus strand signal of all reads) 60.2 MB
ENCFF051XFY.bigWig bigWig (plus strand signal of unique reads) 58.8 MB
ENCFF057ZKP.tsv tsv (transcript quantifications) 29.8 MB
ENCFF069NTO.bam bam (alignments) 4.1 GB
ENCFF077HBH.bigWig bigWig (plus strand signal of unique reads) 59.1 MB
ENCFF096QZQ.fastq fastq (reads) 2.3 GB
ENCFF097BHB.tsv tsv (gene quantifications) 9.4 MB
ENCFF097VUV.bam bam (transcriptome alignments) 5.6 GB
ENCFF100AIM.bam bam (alignments) 3.6 GB
ENCFF105LSN.bigWig bigWig (plus strand signal of all reads) 66.0 MB
ENCFF120ZWU.bigWig bigWig (plus strand signal of all reads) 66.5 MB
ENCFF125QVD.bigWig bigWig (minus strand signal of all reads) 68.0 MB
ENCFF141IDO.bigWig bigWig (minus strand signal of unique reads) 59.1 MB
ENCFF152APJ.tsv tsv (differential expression quantifications) 2.8 MB
ENCFF152AUS.bigWig bigWig (minus strand signal of unique reads) 55.3 MB
ENCFF163KEV.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF171AYZ.bigWig bigWig (minus strand signal of unique reads) 61.0 MB
ENCFF178YXP.bam bam (alignments) 3.5 GB
ENCFF206BGX.bigWig bigWig (plus strand signal of unique reads) 60.1 MB
ENCFF218KSL.bam bam (alignments) 3.6 GB
ENCFF238LTY.tar tar (differential splicing quantifications) 14.8 MB
ENCFF243SRL.tar tar (differential splicing quantifications) 2.8 MB
ENCFF258XBA.tsv tsv (gene quantifications) 10.4 MB
ENCFF269BSC.bam bam (alignments) 3.5 GB
ENCFF279WFC.bigWig bigWig (minus strand signal of all reads) 58.4 MB
ENCFF286LDD.tsv tsv (differential expression quantifications) 4.3 MB
ENCFF291VAA.bam bam (alignments) 3.5 GB
ENCFF296HGX.bigWig bigWig (plus strand signal of unique reads) 56.0 MB
ENCFF304BTP.tsv tsv (transcript quantifications) 24.9 MB
ENCFF311DCB.bam bam (alignments) 4.2 GB
ENCFF312UOK.bigWig bigWig (minus strand signal of all reads) 68.1 MB
ENCFF338EGB.tsv tsv (transcript quantifications) 25.3 MB
ENCFF372EWV.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF387NYI.bigWig bigWig (minus strand signal of unique reads) 53.0 MB
ENCFF390RCH.bam bam (transcriptome alignments) 5.0 GB
ENCFF390TEY.bigWig bigWig (plus strand signal of all reads) 58.7 MB
ENCFF414QKO.bigWig bigWig (plus strand signal of all reads) 66.5 MB
ENCFF424YRE.bigWig bigWig (plus strand signal of all reads) 69.3 MB
ENCFF454YIR.bigWig bigWig (minus strand signal of all reads) 59.1 MB
ENCFF469NGV.bigWig bigWig (plus strand signal of unique reads) 60.7 MB
ENCFF469SQG.tsv tsv (gene quantifications) 9.1 MB
ENCFF513ZZX.bigWig bigWig (minus strand signal of all reads) 65.2 MB
ENCFF516CDE.bam bam (transcriptome alignments) 5.1 GB
ENCFF522CDF.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF527FWM.bigWig bigWig (plus strand signal of unique reads) 54.7 MB
ENCFF537PSL.bam bam (alignments) 4.1 GB
ENCFF537YCW.bigWig bigWig (minus strand signal of unique reads) 59.2 MB
ENCFF541RZZ.bigWig bigWig (minus strand signal of unique reads) 57.4 MB
ENCFF551HJB.fastq fastq (reads) 2.3 GB
ENCFF606DCI.bam bam (transcriptome alignments) 5.0 GB
ENCFF606WTB.tsv tsv (transcript quantifications) 29.8 MB
ENCFF616ISU.bigWig bigWig (minus strand signal of unique reads) 61.7 MB
ENCFF631XNW.tsv tsv (transcript quantifications) 27.3 MB
ENCFF633AFG.bigWig bigWig (plus strand signal of unique reads) 60.8 MB
ENCFF641GOX.fastq fastq (reads) 2.2 GB
ENCFF644MHP.bigWig bigWig (minus strand signal of unique reads) 57.4 MB
ENCFF645QYZ.bigWig bigWig (plus strand signal of unique reads) 63.4 MB
ENCFF651FGK.bigWig bigWig (minus strand signal of unique reads) 61.7 MB
ENCFF667EKR.bigWig bigWig (plus strand signal of all reads) 62.0 MB
ENCFF669UBI.bigWig bigWig (minus strand signal of all reads) 57.3 MB
ENCFF691EUD.bigWig bigWig (minus strand signal of unique reads) 58.5 MB
ENCFF698HGN.bam bam (alignments) 4.2 GB
ENCFF711NFS.bigWig bigWig (plus strand signal of unique reads) 62.7 MB
ENCFF713HDI.tar tar (differential splicing quantifications) 3.3 MB
ENCFF726QUR.bigWig bigWig (minus strand signal of all reads) 61.8 MB
ENCFF729NVU.tsv tsv (gene quantifications) 9.1 MB
ENCFF742JAV.tsv tsv (transcript quantifications) 24.9 MB
ENCFF744OPD.bigWig bigWig (minus strand signal of unique reads) 54.3 MB
ENCFF762GCW.bigWig bigWig (plus strand signal of all reads) 63.1 MB
ENCFF768HPT.bam bam (transcriptome alignments) 5.1 GB
ENCFF773FHF.bam bam (alignments) 4.2 GB
ENCFF776LMT.bigWig bigWig (plus strand signal of unique reads) 56.9 MB
ENCFF776XWN.bigWig bigWig (minus strand signal of all reads) 60.8 MB
ENCFF794TDS.fastq fastq (reads) 2.2 GB
ENCFF800DSH.tsv tsv (gene quantifications) 9.4 MB
ENCFF836VFM.bigWig bigWig (minus strand signal of all reads) 65.2 MB
ENCFF841CHA.bigWig bigWig (plus strand signal of all reads) 60.4 MB
ENCFF867SYF.bigWig bigWig (plus strand signal of all reads) 69.3 MB
ENCFF879TRT.bigWig bigWig (plus strand signal of all reads) 69.3 MB
ENCFF885SDS.tsv tsv (gene quantifications) 10.4 MB
ENCFF895FYL.bam bam (alignments) 3.5 GB
ENCFF898CDM.bigWig bigWig (plus strand signal of all reads) 59.5 MB
ENCFF922CCM.bigWig bigWig (minus strand signal of all reads) 58.8 MB
ENCFF932OZN.bam bam (transcriptome alignments) 5.7 GB
ENCFF937UQY.bigWig bigWig (plus strand signal of unique reads) 56.8 MB
ENCFF958EPC.bigWig bigWig (plus strand signal of unique reads) 63.4 MB
ENCFF961WYS.bigWig bigWig (minus strand signal of all reads) 64.8 MB
ENCFF967XTJ.bigWig bigWig (minus strand signal of all reads) 68.0 MB
ENCFF980OTG.bigWig bigWig (minus strand signal of unique reads) 55.4 MB
ENCFF982CVS.tsv tsv (transcript quantifications) 25.3 MB
ENCFF987GQG.tsv tsv (transcript quantifications) 27.2 MB
ENCSR278BZH ENCSR · via encode_api

eCLIP control experiment on HepG2 against NOLC1

Homo sapiens

8 data files
FileTypeSize
ENCFF094LAU.bigWig bigWig (plus strand signal of unique reads) 25.0 MB
ENCFF134DMB.fastq fastq (reads) 776.3 MB
ENCFF200IHY.fastq fastq (reads) 807.5 MB
ENCFF221KHG.bam bam (alignments) 543.4 MB
ENCFF694SYB.bigWig bigWig (plus strand signal of unique reads) 25.4 MB
ENCFF793GFK.bigWig bigWig (minus strand signal of unique reads) 24.6 MB
ENCFF852DRN.bam bam (alignments) 553.2 MB
ENCFF884FUD.bigWig bigWig (minus strand signal of unique reads) 24.2 MB
ENCSR823WTA ENCSR · via encode_api

RNA-seq on K562 cells treated with an shRNA knockdown against KIF1C. (KIF1C_BGKLV32)

Homo sapiens

92 data files
FileTypeSize
ENCFF004XES.bigWig bigWig (minus strand signal of unique reads) 77.5 MB
ENCFF024KES.bigWig bigWig (minus strand signal of all reads) 99.8 MB
ENCFF029LDF.bam bam (alignments) 5.2 GB
ENCFF029VZZ.bigWig bigWig (minus strand signal of all reads) 86.5 MB
ENCFF033UNN.bigWig bigWig (plus strand signal of all reads) 125.0 MB
ENCFF039OMD.tsv tsv (transcript quantifications) 29.9 MB
ENCFF044JCF.bigWig bigWig (plus strand signal of unique reads) 84.0 MB
ENCFF064VAR.bigWig bigWig (plus strand signal of unique reads) 118.8 MB
ENCFF070MTJ.tar tar (differential splicing quantifications) 4.3 MB
ENCFF088UCN.bigWig bigWig (plus strand signal of unique reads) 127.8 MB
ENCFF095BOG.bigWig bigWig (plus strand signal of all reads) 90.6 MB
ENCFF099YAW.bam bam (alignments) 5.2 GB
ENCFF106OFX.bigWig bigWig (minus strand signal of unique reads) 124.4 MB
ENCFF107LGT.bigWig bigWig (plus strand signal of all reads) 127.1 MB
ENCFF135MEM.tsv tsv (gene quantifications) 10.4 MB
ENCFF135URE.bam bam (alignments) 6.4 GB
ENCFF144MYN.bam bam (transcriptome alignments) 6.5 GB
ENCFF158NUA.bigWig bigWig (minus strand signal of unique reads) 88.6 MB
ENCFF161KNZ.bigWig bigWig (minus strand signal of unique reads) 80.7 MB
ENCFF163DNT.bigWig bigWig (minus strand signal of unique reads) 89.1 MB
ENCFF177JEP.tsv tsv (transcript quantifications) 25.3 MB
ENCFF187UQS.tsv tsv (gene quantifications) 9.5 MB
ENCFF193MMF.bigWig bigWig (minus strand signal of all reads) 122.6 MB
ENCFF196CJF.tsv tsv (transcript quantifications) 25.0 MB
ENCFF232VRZ.bigWig bigWig (plus strand signal of unique reads) 117.4 MB
ENCFF235PXX.bigWig bigWig (minus strand signal of all reads) 99.5 MB
ENCFF249LCB.bigWig bigWig (minus strand signal of unique reads) 88.9 MB
ENCFF267TKW.fastq fastq (reads) 3.3 GB
ENCFF276WBM.fastq fastq (reads) 3.3 GB
ENCFF280MPS.tsv tsv (transcript quantifications) 29.8 MB
ENCFF288XSM.bigWig bigWig (minus strand signal of all reads) 138.0 MB
ENCFF301NFG.bam bam (transcriptome alignments) 6.6 GB
ENCFF302PCM.bigWig bigWig (plus strand signal of all reads) 88.1 MB
ENCFF305WXM.fastq fastq (reads) 5.7 GB
ENCFF306POY.tsv tsv (differential expression quantifications) 2.0 MB
ENCFF309CZA.bam bam (transcriptome alignments) 11.7 GB
ENCFF322SOI.bigWig bigWig (plus strand signal of unique reads) 128.0 MB
ENCFF358XRX.bam bam (alignments) 10.3 GB
ENCFF363PIV.bigWig bigWig (plus strand signal of all reads) 142.3 MB
ENCFF366DYT.bam bam (transcriptome alignments) 13.2 GB
ENCFF382JHD.bigWig bigWig (minus strand signal of all reads) 122.8 MB
ENCFF382KUU.bigWig bigWig (plus strand signal of unique reads) 127.9 MB
ENCFF389HTV.bigWig bigWig (plus strand signal of all reads) 101.5 MB
ENCFF396STU.bigWig bigWig (plus strand signal of all reads) 125.5 MB
ENCFF412HSY.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF431BKD.bigWig bigWig (minus strand signal of unique reads) 124.4 MB
ENCFF466ZOK.tar tar (differential splicing quantifications) 5.8 MB
ENCFF484KAO.tsv tsv (gene quantifications) 9.1 MB
ENCFF484PBC.tsv tsv (gene quantifications) 9.1 MB
ENCFF493QVH.tsv tsv (transcript quantifications) 27.4 MB
ENCFF521CTA.bigWig bigWig (plus strand signal of unique reads) 116.9 MB
ENCFF528JRJ.bam bam (alignments) 6.2 GB
ENCFF529GUP.bigWig bigWig (minus strand signal of all reads) 139.9 MB
ENCFF543KMJ.tsv tsv (differential expression quantifications) 4.5 MB
ENCFF548XNI.bigWig bigWig (plus strand signal of unique reads) 91.1 MB
ENCFF549KPT.bigWig bigWig (plus strand signal of all reads) 86.4 MB
ENCFF559TRI.bigWig bigWig (plus strand signal of unique reads) 91.6 MB
ENCFF589OOS.bigWig bigWig (minus strand signal of all reads) 88.5 MB
ENCFF597JIL.bam bam (alignments) 8.5 GB
ENCFF600JAQ.fastq fastq (reads) 5.6 GB
ENCFF634VKK.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF667RFR.tsv tsv (gene quantifications) 10.4 MB
ENCFF670UQI.bigWig bigWig (minus strand signal of unique reads) 115.4 MB
ENCFF682LTT.bigWig bigWig (minus strand signal of all reads) 139.9 MB
ENCFF693WCB.tsv tsv (transcript quantifications) 25.4 MB
ENCFF694XAA.bigWig bigWig (plus strand signal of unique reads) 82.8 MB
ENCFF695XON.bigWig bigWig (plus strand signal of unique reads) 80.1 MB
ENCFF710UFV.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF724XIO.bigWig bigWig (minus strand signal of unique reads) 113.2 MB
ENCFF778MWX.bigWig bigWig (plus strand signal of all reads) 142.3 MB
ENCFF806EXC.bam bam (transcriptome alignments) 11.7 GB
ENCFF820AXT.bam bam (alignments) 10.7 GB
ENCFF833OEQ.bam bam (transcriptome alignments) 7.4 GB
ENCFF833WEC.bam bam (alignments) 10.7 GB
ENCFF838MPG.bam bam (alignments) 5.3 GB
ENCFF840PMX.bam bam (alignments) 6.4 GB
ENCFF863LBZ.bigWig bigWig (plus strand signal of all reads) 101.4 MB
ENCFF864MWM.tar tar (differential splicing quantifications) 17.2 MB
ENCFF873CEO.bigWig bigWig (minus strand signal of unique reads) 114.5 MB
ENCFF889WJM.bigWig bigWig (plus strand signal of all reads) 140.5 MB
ENCFF891PHS.bigWig bigWig (minus strand signal of unique reads) 81.5 MB
ENCFF901BYP.bigWig bigWig (minus strand signal of all reads) 99.8 MB
ENCFF906OEN.bigWig bigWig (plus strand signal of unique reads) 91.6 MB
ENCFF918NWL.tsv tsv (transcript quantifications) 27.5 MB
ENCFF923VNR.tsv tsv (gene quantifications) 9.5 MB
ENCFF924OLW.tsv tsv (transcript quantifications) 24.9 MB
ENCFF924VHM.bigWig bigWig (plus strand signal of all reads) 101.6 MB
ENCFF944RRM.bigWig bigWig (minus strand signal of all reads) 84.3 MB
ENCFF967EXA.bigWig bigWig (minus strand signal of all reads) 124.3 MB
ENCFF978JHH.bam bam (alignments) 8.7 GB
ENCFF982SYC.bam bam (alignments) 8.5 GB
ENCFF983MEP.bigWig bigWig (minus strand signal of unique reads) 124.6 MB
ENCSR624FBY ENCSR · via encode_api

shRNA knockdown against LARP7 in HepG2 cells followed by RNA-seq. (LARP7_BGHLV18)

Homo sapiens

92 data files
FileTypeSize
ENCFF005PNN.bigWig bigWig (plus strand signal of unique reads) 68.9 MB
ENCFF020BLN.bam bam (alignments) 3.8 GB
ENCFF022SQO.bigWig bigWig (plus strand signal of unique reads) 66.3 MB
ENCFF026LPK.bigWig bigWig (minus strand signal of unique reads) 70.7 MB
ENCFF052GOV.bigWig bigWig (minus strand signal of all reads) 74.2 MB
ENCFF078UMY.bam bam (alignments) 3.2 GB
ENCFF079TBG.bigWig bigWig (plus strand signal of unique reads) 68.6 MB
ENCFF084TKH.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF089MSH.bam bam (alignments) 4.2 GB
ENCFF090YDV.bigWig bigWig (minus strand signal of unique reads) 64.5 MB
ENCFF094PKO.fastq fastq (reads) 2.2 GB
ENCFF128CUG.bigWig bigWig (plus strand signal of unique reads) 72.5 MB
ENCFF137FSY.bigWig bigWig (plus strand signal of all reads) 79.4 MB
ENCFF138UJP.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF152WHP.bigWig bigWig (minus strand signal of all reads) 67.5 MB
ENCFF175HCQ.bam bam (alignments) 3.8 GB
ENCFF228WNK.bam bam (alignments) 3.2 GB
ENCFF245ZND.bigWig bigWig (plus strand signal of all reads) 66.6 MB
ENCFF251LGP.bigWig bigWig (minus strand signal of all reads) 72.1 MB
ENCFF304MOV.tar tar (differential splicing quantifications) 3.2 MB
ENCFF308LRZ.fastq fastq (reads) 2.3 GB
ENCFF316TVI.bigWig bigWig (plus strand signal of all reads) 72.2 MB
ENCFF326LOD.tsv tsv (gene quantifications) 9.4 MB
ENCFF330JVV.bigWig bigWig (minus strand signal of all reads) 69.0 MB
ENCFF347FSQ.bigWig bigWig (plus strand signal of all reads) 76.1 MB
ENCFF380UUP.bigWig bigWig (minus strand signal of all reads) 78.0 MB
ENCFF383LPL.bam bam (transcriptome alignments) 5.3 GB
ENCFF395ATQ.bigWig bigWig (minus strand signal of unique reads) 63.1 MB
ENCFF398KVR.bam bam (alignments) 3.5 GB
ENCFF403ROB.tsv tsv (gene quantifications) 9.1 MB
ENCFF404ECD.bigWig bigWig (minus strand signal of all reads) 65.2 MB
ENCFF407QHN.tar tar (differential splicing quantifications) 3.8 MB
ENCFF410QSR.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF414GDW.bigWig bigWig (plus strand signal of unique reads) 65.7 MB
ENCFF421CXR.bigWig bigWig (minus strand signal of unique reads) 66.8 MB
ENCFF446HRN.bam bam (alignments) 3.5 GB
ENCFF448GXK.bam bam (transcriptome alignments) 5.3 GB
ENCFF464YAG.bigWig bigWig (minus strand signal of unique reads) 70.7 MB
ENCFF472HDU.bigWig bigWig (minus strand signal of all reads) 74.8 MB
ENCFF517LVM.bigWig bigWig (plus strand signal of unique reads) 68.7 MB
ENCFF518GGR.tsv tsv (transcript quantifications) 25.3 MB
ENCFF519AFY.bigWig bigWig (minus strand signal of unique reads) 60.9 MB
ENCFF534XFK.tar tar (differential splicing quantifications) 15.2 MB
ENCFF550HXD.bigWig bigWig (plus strand signal of all reads) 73.5 MB
ENCFF555SUB.tsv tsv (differential expression quantifications) 4.3 MB
ENCFF583XDN.bigWig bigWig (plus strand signal of unique reads) 72.6 MB
ENCFF592FLD.bigWig bigWig (plus strand signal of unique reads) 72.6 MB
ENCFF598EFC.tsv tsv (transcript quantifications) 24.9 MB
ENCFF600IOA.bigWig bigWig (minus strand signal of unique reads) 63.9 MB
ENCFF601OFM.bam bam (alignments) 4.2 GB
ENCFF616ONX.bigWig bigWig (minus strand signal of unique reads) 66.9 MB
ENCFF619HMF.bigWig bigWig (plus strand signal of all reads) 70.4 MB
ENCFF620CPU.bam bam (alignments) 3.2 GB
ENCFF623QBL.bigWig bigWig (minus strand signal of all reads) 67.8 MB
ENCFF631SQW.bam bam (transcriptome alignments) 5.2 GB
ENCFF643DVN.bigWig bigWig (plus strand signal of all reads) 75.4 MB
ENCFF649AXE.fastq fastq (reads) 2.1 GB
ENCFF649TNJ.tsv tsv (transcript quantifications) 27.3 MB
ENCFF677BDA.bigWig bigWig (plus strand signal of unique reads) 62.6 MB
ENCFF684EKB.tsv tsv (gene quantifications) 9.4 MB
ENCFF692YUD.bam bam (transcriptome alignments) 4.7 GB
ENCFF693OHS.bigWig bigWig (minus strand signal of all reads) 78.0 MB
ENCFF703GQO.bigWig bigWig (minus strand signal of unique reads) 67.0 MB
ENCFF706CJO.bigWig bigWig (plus strand signal of unique reads) 64.6 MB
ENCFF722PNO.bigWig bigWig (plus strand signal of all reads) 68.8 MB
ENCFF731CTZ.tsv tsv (transcript quantifications) 29.8 MB
ENCFF731GRH.tsv tsv (transcript quantifications) 24.9 MB
ENCFF752VAO.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF756XSJ.fastq fastq (reads) 2.0 GB
ENCFF787GCZ.bam bam (alignments) 4.1 GB
ENCFF790GXC.bigWig bigWig (minus strand signal of all reads) 70.9 MB
ENCFF795FRJ.bigWig bigWig (minus strand signal of unique reads) 67.1 MB
ENCFF809DNC.tsv tsv (transcript quantifications) 29.8 MB
ENCFF824FNP.bam bam (transcriptome alignments) 5.9 GB
ENCFF870DWP.bam bam (alignments) 3.7 GB
ENCFF884TRK.tsv tsv (transcript quantifications) 27.3 MB
ENCFF895KFU.bigWig bigWig (plus strand signal of all reads) 69.2 MB
ENCFF896DLJ.bigWig bigWig (plus strand signal of all reads) 76.1 MB
ENCFF908XTC.bigWig bigWig (minus strand signal of all reads) 74.7 MB
ENCFF914ZOK.tsv tsv (transcript quantifications) 25.3 MB
ENCFF932ZAP.bigWig bigWig (minus strand signal of all reads) 78.0 MB
ENCFF935GDD.bigWig bigWig (minus strand signal of unique reads) 70.8 MB
ENCFF936OPH.bam bam (alignments) 3.5 GB
ENCFF945MTD.bigWig bigWig (minus strand signal of unique reads) 66.8 MB
ENCFF950FOP.bigWig bigWig (plus strand signal of unique reads) 68.5 MB
ENCFF956JLB.tsv tsv (gene quantifications) 10.4 MB
ENCFF962PPW.tsv tsv (gene quantifications) 9.1 MB
ENCFF974KWT.bigWig bigWig (plus strand signal of all reads) 79.2 MB
ENCFF975OAW.bam bam (transcriptome alignments) 4.7 GB
ENCFF988CPB.tsv tsv (gene quantifications) 10.4 MB
ENCFF992FSN.bigWig bigWig (plus strand signal of all reads) 79.3 MB
ENCFF996MPT.bigWig bigWig (plus strand signal of unique reads) 68.7 MB
ENCSR454EER ENCSR · via encode_api

eCLIP control experiment on K562 against RBM15

Homo sapiens

8 data files
FileTypeSize
ENCFF078XFM.bigWig bigWig (plus strand signal of unique reads) 19.5 MB
ENCFF301ZAC.bigWig bigWig (minus strand signal of unique reads) 18.9 MB
ENCFF413OBS.bam bam (alignments) 392.7 MB
ENCFF584YFH.fastq fastq (reads) 515.7 MB
ENCFF697LPT.bam bam (alignments) 408.8 MB
ENCFF890YWF.bigWig bigWig (minus strand signal of unique reads) 19.8 MB
ENCFF933ORH.fastq fastq (reads) 492.3 MB
ENCFF939CDY.bigWig bigWig (plus strand signal of unique reads) 20.4 MB
ENCSR192PUP ENCSR · via encode_api

eCLIP control experiment on HepG2 against LARP4

Homo sapiens

8 data files
FileTypeSize
ENCFF234DAV.bam bam (alignments) 565.2 MB
ENCFF234QFN.bigWig bigWig (plus strand signal of unique reads) 26.0 MB
ENCFF337XDN.bigWig bigWig (minus strand signal of unique reads) 25.6 MB
ENCFF460IZX.bigWig bigWig (minus strand signal of unique reads) 25.8 MB
ENCFF512AHQ.fastq fastq (reads) 561.7 MB
ENCFF649CHF.fastq fastq (reads) 533.0 MB
ENCFF856VFR.bigWig bigWig (plus strand signal of unique reads) 26.2 MB
ENCFF881RZM.bam bam (alignments) 569.9 MB
ENCSR813NZP ENCSR · via encode_api

RNA-seq on K562 cells treated with an shRNA knockdown against SRFBP1. (SRFBP1_BGKLV21)

Homo sapiens

92 data files
FileTypeSize
ENCFF008CMM.bigWig bigWig (plus strand signal of all reads) 56.2 MB
ENCFF010ZXA.bigWig bigWig (minus strand signal of unique reads) 45.9 MB
ENCFF014CSM.tsv tsv (gene quantifications) 9.1 MB
ENCFF020FNS.bam bam (alignments) 2.9 GB
ENCFF023QCZ.bigWig bigWig (plus strand signal of all reads) 48.1 MB
ENCFF029QNJ.bigWig bigWig (plus strand signal of unique reads) 47.0 MB
ENCFF043PZS.tsv tsv (differential expression quantifications) 5.5 MB
ENCFF047VRS.tsv tsv (transcript quantifications) 25.3 MB
ENCFF048UBM.bigWig bigWig (plus strand signal of unique reads) 44.0 MB
ENCFF051RWS.bam bam (transcriptome alignments) 3.2 GB
ENCFF076WTP.bam bam (alignments) 2.3 GB
ENCFF085UPE.tar tar (differential splicing quantifications) 13.2 MB
ENCFF088PLH.bam bam (alignments) 2.5 GB
ENCFF097EBL.bigWig bigWig (plus strand signal of unique reads) 54.9 MB
ENCFF104THN.bigWig bigWig (minus strand signal of all reads) 59.2 MB
ENCFF110BVC.bigWig bigWig (minus strand signal of unique reads) 45.8 MB
ENCFF125XES.tsv tsv (gene quantifications) 10.4 MB
ENCFF126ZVT.fastq fastq (reads) 1.6 GB
ENCFF129FWS.bigWig bigWig (plus strand signal of all reads) 61.0 MB
ENCFF141AQZ.bigWig bigWig (plus strand signal of unique reads) 42.0 MB
ENCFF143NTB.bam bam (transcriptome alignments) 3.2 GB
ENCFF152ZZL.bigWig bigWig (minus strand signal of unique reads) 53.5 MB
ENCFF153XRW.bigWig bigWig (minus strand signal of all reads) 52.0 MB
ENCFF155CTB.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF157HRD.bam bam (alignments) 2.3 GB
ENCFF161IPZ.bigWig bigWig (minus strand signal of unique reads) 43.1 MB
ENCFF177SKJ.bigWig bigWig (minus strand signal of unique reads) 43.5 MB
ENCFF186LXL.bigWig bigWig (plus strand signal of all reads) 53.8 MB
ENCFF187QMX.bam bam (alignments) 2.4 GB
ENCFF211VNA.bigWig bigWig (minus strand signal of all reads) 47.1 MB
ENCFF213AYK.bigWig bigWig (minus strand signal of all reads) 60.2 MB
ENCFF215OPM.bigWig bigWig (plus strand signal of all reads) 45.2 MB
ENCFF252XAE.bigWig bigWig (plus strand signal of unique reads) 44.7 MB
ENCFF263HSR.tsv tsv (transcript quantifications) 27.2 MB
ENCFF281BOD.bam bam (alignments) 2.9 GB
ENCFF283CMJ.tar tar (differential splicing quantifications) 2.8 MB
ENCFF289MLN.bigWig bigWig (plus strand signal of all reads) 60.0 MB
ENCFF299WEM.bam bam (transcriptome alignments) 3.6 GB
ENCFF325DOP.bigWig bigWig (minus strand signal of unique reads) 50.6 MB
ENCFF335IGS.bigWig bigWig (plus strand signal of all reads) 52.8 MB
ENCFF351FXG.tsv tsv (gene quantifications) 10.4 MB
ENCFF406SEG.bigWig bigWig (minus strand signal of unique reads) 40.8 MB
ENCFF410KUF.bam bam (transcriptome alignments) 3.4 GB
ENCFF419SGI.bigWig bigWig (minus strand signal of unique reads) 53.4 MB
ENCFF420QGO.bigWig bigWig (minus strand signal of all reads) 51.4 MB
ENCFF424IAD.bigWig bigWig (minus strand signal of unique reads) 46.2 MB
ENCFF442CYP.bigWig bigWig (minus strand signal of all reads) 53.1 MB
ENCFF442MPM.bigWig bigWig (minus strand signal of all reads) 44.3 MB
ENCFF444BZL.bigWig bigWig (plus strand signal of all reads) 54.2 MB
ENCFF450BIQ.bigWig bigWig (plus strand signal of unique reads) 48.5 MB
ENCFF453EPK.bam bam (alignments) 2.4 GB
ENCFF458WHF.bigWig bigWig (plus strand signal of all reads) 60.9 MB
ENCFF459ORM.bam bam (transcriptome alignments) 3.4 GB
ENCFF470AMR.bigWig bigWig (plus strand signal of unique reads) 54.8 MB
ENCFF516LDJ.tsv tsv (transcript quantifications) 29.8 MB
ENCFF518IEU.fastq fastq (reads) 1.5 GB
ENCFF518UFZ.tsv tsv (gene quantifications) 9.4 MB
ENCFF542LIG.bam bam (alignments) 2.3 GB
ENCFF547WGY.bigWig bigWig (minus strand signal of unique reads) 50.2 MB
ENCFF550RON.bigWig bigWig (minus strand signal of all reads) 60.1 MB
ENCFF556UEX.bigWig bigWig (plus strand signal of unique reads) 47.3 MB
ENCFF563TJQ.tsv tsv (transcript quantifications) 24.9 MB
ENCFF568MOD.bigWig bigWig (plus strand signal of all reads) 53.8 MB
ENCFF578FTQ.fastq fastq (reads) 1.6 GB
ENCFF591DKD.bigWig bigWig (minus strand signal of all reads) 53.1 MB
ENCFF598RNY.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF603TMN.bigWig bigWig (minus strand signal of unique reads) 53.1 MB
ENCFF606ZWH.tsv tsv (differential expression quantifications) 4.2 MB
ENCFF607HVX.bam bam (alignments) 2.7 GB
ENCFF621JUR.bam bam (alignments) 2.9 GB
ENCFF622BOZ.bigWig bigWig (minus strand signal of all reads) 47.4 MB
ENCFF685DWW.bam bam (alignments) 2.8 GB
ENCFF691ZRO.bigWig bigWig (minus strand signal of all reads) 53.5 MB
ENCFF697TIA.bigWig bigWig (plus strand signal of all reads) 52.5 MB
ENCFF699KZD.tsv tsv (transcript quantifications) 24.9 MB
ENCFF702CSV.bigWig bigWig (plus strand signal of unique reads) 54.5 MB
ENCFF706JZK.bigWig bigWig (plus strand signal of unique reads) 52.0 MB
ENCFF722HAN.tsv tsv (transcript quantifications) 27.2 MB
ENCFF740EME.tar tar (differential splicing quantifications) 3.3 MB
ENCFF757CPR.bigWig bigWig (plus strand signal of unique reads) 47.0 MB
ENCFF775BZA.tsv tsv (gene quantifications) 9.1 MB
ENCFF781NNY.bigWig bigWig (plus strand signal of all reads) 48.0 MB
ENCFF805UDS.bigWig bigWig (minus strand signal of all reads) 55.2 MB
ENCFF818ETK.fastq fastq (reads) 1.4 GB
ENCFF824CDC.bam bam (transcriptome alignments) 3.8 GB
ENCFF858SPF.tsv tsv (transcript quantifications) 29.8 MB
ENCFF898EKZ.bigWig bigWig (minus strand signal of unique reads) 47.1 MB
ENCFF898QQQ.tsv tsv (gene quantifications) 9.4 MB
ENCFF901EGK.bam bam (alignments) 2.8 GB
ENCFF902NJP.tsv tsv (transcript quantifications) 25.3 MB
ENCFF958GKQ.bigWig bigWig (plus strand signal of unique reads) 51.3 MB
ENCFF979EIR.tsv tsv (differential expression quantifications) 1.8 MB
ENCSR606QIX ENCSR · via encode_api

shRNA knockdown against BCCIP in K562 cells followed by RNA-seq. (BCCIP_BGKLV19)

Homo sapiens

92 data files
FileTypeSize
ENCFF009HYJ.tsv tsv (transcript quantifications) 27.3 MB
ENCFF026UVJ.bigWig bigWig (minus strand signal of unique reads) 72.7 MB
ENCFF035EMJ.bigWig bigWig (plus strand signal of all reads) 78.9 MB
ENCFF044VHP.bigWig bigWig (minus strand signal of unique reads) 69.0 MB
ENCFF085CMT.bigWig bigWig (plus strand signal of all reads) 80.1 MB
ENCFF085QMT.bam bam (transcriptome alignments) 5.8 GB
ENCFF092BED.bigWig bigWig (minus strand signal of unique reads) 75.9 MB
ENCFF101OEM.tsv tsv (gene quantifications) 9.4 MB
ENCFF111VXC.tsv tsv (differential expression quantifications) 5.5 MB
ENCFF119NHH.bigWig bigWig (plus strand signal of unique reads) 84.6 MB
ENCFF120ITE.bigWig bigWig (minus strand signal of all reads) 85.4 MB
ENCFF148PAJ.bigWig bigWig (minus strand signal of all reads) 83.3 MB
ENCFF162FCE.bam bam (alignments) 3.6 GB
ENCFF171EJH.bigWig bigWig (minus strand signal of unique reads) 75.9 MB
ENCFF174HAI.bam bam (alignments) 4.4 GB
ENCFF181JWY.fastq fastq (reads) 2.7 GB
ENCFF182DFD.fastq fastq (reads) 2.2 GB
ENCFF187URW.bam bam (alignments) 4.1 GB
ENCFF190CEG.bam bam (alignments) 4.2 GB
ENCFF194LMV.bigWig bigWig (plus strand signal of all reads) 87.8 MB
ENCFF219GMD.tsv tsv (transcript quantifications) 29.8 MB
ENCFF222PIO.bigWig bigWig (minus strand signal of all reads) 82.2 MB
ENCFF229CJR.tsv tsv (transcript quantifications) 29.8 MB
ENCFF229XIK.tsv tsv (gene quantifications) 10.4 MB
ENCFF230PTE.bam bam (transcriptome alignments) 5.1 GB
ENCFF254FXJ.tar tar (differential splicing quantifications) 4.1 MB
ENCFF330NST.bam bam (transcriptome alignments) 6.6 GB
ENCFF350NIJ.bigWig bigWig (plus strand signal of unique reads) 77.6 MB
ENCFF375MUD.bigWig bigWig (minus strand signal of all reads) 92.8 MB
ENCFF378REU.bigWig bigWig (minus strand signal of all reads) 92.8 MB
ENCFF385HET.bigWig bigWig (plus strand signal of all reads) 94.0 MB
ENCFF385MBP.bigWig bigWig (plus strand signal of all reads) 83.8 MB
ENCFF387ZBX.bam bam (transcriptome alignments) 5.7 GB
ENCFF399EHT.bigWig bigWig (minus strand signal of all reads) 78.7 MB
ENCFF404RVT.bigWig bigWig (plus strand signal of unique reads) 79.9 MB
ENCFF416OTH.tar tar (differential splicing quantifications) 3.5 MB
ENCFF425KPF.bigWig bigWig (plus strand signal of unique reads) 83.8 MB
ENCFF425SCF.bigWig bigWig (minus strand signal of unique reads) 82.7 MB
ENCFF455EIF.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF455EOO.bigWig bigWig (minus strand signal of all reads) 86.7 MB
ENCFF469WDG.bigWig bigWig (minus strand signal of all reads) 92.1 MB
ENCFF483OPL.bigWig bigWig (minus strand signal of unique reads) 72.4 MB
ENCFF483RCP.bam bam (alignments) 4.1 GB
ENCFF507KEX.bigWig bigWig (plus strand signal of unique reads) 77.7 MB
ENCFF529FHU.bam bam (alignments) 4.9 GB
ENCFF532IZO.bigWig bigWig (plus strand signal of unique reads) 73.9 MB
ENCFF535DCI.bigWig bigWig (plus strand signal of all reads) 86.5 MB
ENCFF536TDW.bam bam (alignments) 3.7 GB
ENCFF561ARI.tsv tsv (gene quantifications) 9.4 MB
ENCFF569JDE.tsv tsv (gene quantifications) 9.1 MB
ENCFF580LGF.bam bam (alignments) 5.1 GB
ENCFF600PNT.bigWig bigWig (minus strand signal of unique reads) 77.6 MB
ENCFF616RVM.fastq fastq (reads) 2.6 GB
ENCFF621VZB.bigWig bigWig (plus strand signal of all reads) 76.4 MB
ENCFF638ZCV.bigWig bigWig (plus strand signal of all reads) 86.8 MB
ENCFF642YHV.tsv tsv (transcript quantifications) 24.9 MB
ENCFF654UDZ.bigWig bigWig (plus strand signal of unique reads) 77.8 MB
ENCFF657KCJ.tsv tsv (gene quantifications) 10.4 MB
ENCFF664MFA.bigWig bigWig (plus strand signal of unique reads) 77.7 MB
ENCFF670ALD.bam bam (alignments) 4.2 GB
ENCFF712MHZ.bam bam (transcriptome alignments) 5.0 GB
ENCFF713ECG.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF717KVU.bigWig bigWig (plus strand signal of all reads) 93.3 MB
ENCFF721NKX.bigWig bigWig (minus strand signal of unique reads) 81.7 MB
ENCFF724DDK.bam bam (alignments) 4.4 GB
ENCFF727UXZ.fastq fastq (reads) 2.4 GB
ENCFF742UKH.tsv tsv (gene quantifications) 9.1 MB
ENCFF749AYS.bigWig bigWig (plus strand signal of unique reads) 79.2 MB
ENCFF760BZL.bigWig bigWig (minus strand signal of unique reads) 76.0 MB
ENCFF761HSI.bigWig bigWig (minus strand signal of all reads) 86.2 MB
ENCFF765QHG.bam bam (transcriptome alignments) 5.9 GB
ENCFF769ZVG.bigWig bigWig (minus strand signal of unique reads) 77.9 MB
ENCFF771UKF.bigWig bigWig (plus strand signal of unique reads) 70.8 MB
ENCFF789VJW.bigWig bigWig (minus strand signal of unique reads) 75.6 MB
ENCFF810GWP.bigWig bigWig (plus strand signal of unique reads) 84.6 MB
ENCFF818ZLA.tsv tsv (transcript quantifications) 25.3 MB
ENCFF836BBZ.bigWig bigWig (plus strand signal of all reads) 94.0 MB
ENCFF841CVX.bam bam (alignments) 5.1 GB
ENCFF868NCC.tsv tsv (transcript quantifications) 27.3 MB
ENCFF882XQI.bigWig bigWig (minus strand signal of all reads) 75.1 MB
ENCFF882ZFT.tsv tsv (transcript quantifications) 25.3 MB
ENCFF894WRQ.bigWig bigWig (minus strand signal of all reads) 77.9 MB
ENCFF895PNY.bigWig bigWig (minus strand signal of unique reads) 82.7 MB
ENCFF898BRW.bigWig bigWig (minus strand signal of all reads) 85.4 MB
ENCFF917BVJ.bigWig bigWig (plus strand signal of all reads) 87.3 MB
ENCFF917VZI.tsv tsv (transcript quantifications) 24.9 MB
ENCFF918GIJ.tsv tsv (differential expression quantifications) 4.2 MB
ENCFF941HGW.bigWig bigWig (plus strand signal of all reads) 84.3 MB
ENCFF944OQI.tsv tsv (differential expression quantifications) 2.8 MB
ENCFF958YSJ.tar tar (differential splicing quantifications) 15.4 MB
ENCFF958ZER.bam bam (alignments) 3.6 GB
ENCFF968AIL.bigWig bigWig (plus strand signal of unique reads) 74.5 MB
ENCSR674KEK ENCSR · via encode_api

Control shRNA against no target in HepG2 cells followed by RNA-seq. (NT_BGHLV18)

Homo sapiens

84 data files
FileTypeSize
ENCFF006QAK.fastq fastq (reads) 1.5 GB
ENCFF076EDM.bigWig bigWig (minus strand signal of unique reads) 78.0 MB
ENCFF076GQQ.bam bam (transcriptome alignments) 6.6 GB
ENCFF077PQS.bigWig bigWig (minus strand signal of all reads) 56.4 MB
ENCFF105PLS.tsv tsv (transcript quantifications) 29.7 MB
ENCFF119QUC.bam bam (transcriptome alignments) 5.8 GB
ENCFF137WAL.bigWig bigWig (plus strand signal of all reads) 54.4 MB
ENCFF142SQX.bam bam (alignments) 3.8 GB
ENCFF143YHW.bigWig bigWig (minus strand signal of unique reads) 53.0 MB
ENCFF146EYY.bam bam (alignments) 3.9 GB
ENCFF174GBT.bigWig bigWig (plus strand signal of unique reads) 56.7 MB
ENCFF185SSY.bam bam (alignments) 2.3 GB
ENCFF203MZR.tsv tsv (gene quantifications) 9.4 MB
ENCFF232HCC.bam bam (alignments) 2.8 GB
ENCFF242CVU.bigWig bigWig (plus strand signal of all reads) 61.6 MB
ENCFF252YUA.tsv tsv (gene quantifications) 9.1 MB
ENCFF253WJG.tsv tsv (transcript quantifications) 27.3 MB
ENCFF259MPT.tsv tsv (transcript quantifications) 24.8 MB
ENCFF261BLR.bam bam (alignments) 2.6 GB
ENCFF268DUO.tsv tsv (gene quantifications) 9.4 MB
ENCFF277IRD.bigWig bigWig (plus strand signal of unique reads) 80.0 MB
ENCFF278VBD.fastq fastq (reads) 1.4 GB
ENCFF317JIU.bigWig bigWig (plus strand signal of unique reads) 51.2 MB
ENCFF326HAD.bigWig bigWig (minus strand signal of all reads) 79.2 MB
ENCFF329VAD.tsv tsv (gene quantifications) 10.4 MB
ENCFF354PQM.tsv tsv (transcript quantifications) 29.8 MB
ENCFF367UHV.bigWig bigWig (minus strand signal of all reads) 86.8 MB
ENCFF377WGX.bigWig bigWig (plus strand signal of unique reads) 56.7 MB
ENCFF386NND.bam bam (alignments) 2.2 GB
ENCFF386XVO.tsv tsv (transcript quantifications) 25.2 MB
ENCFF401JHV.bigWig bigWig (plus strand signal of all reads) 57.5 MB
ENCFF432OLY.bam bam (alignments) 4.7 GB
ENCFF436LJP.bigWig bigWig (minus strand signal of unique reads) 55.4 MB
ENCFF444EFM.bam bam (transcriptome alignments) 3.3 GB
ENCFF464SRR.bigWig bigWig (minus strand signal of all reads) 61.6 MB
ENCFF467XRO.bigWig bigWig (minus strand signal of unique reads) 77.9 MB
ENCFF482QRC.bam bam (transcriptome alignments) 5.9 GB
ENCFF491RJT.bigWig bigWig (minus strand signal of all reads) 80.0 MB
ENCFF492DDY.bigWig bigWig (plus strand signal of all reads) 80.6 MB
ENCFF505HKR.bam bam (alignments) 2.2 GB
ENCFF513KFY.bigWig bigWig (plus strand signal of all reads) 88.3 MB
ENCFF534WBH.bigWig bigWig (minus strand signal of all reads) 86.8 MB
ENCFF541UZQ.bigWig bigWig (plus strand signal of all reads) 81.6 MB
ENCFF579QMR.bigWig bigWig (minus strand signal of all reads) 56.3 MB
ENCFF585ERV.tsv tsv (gene quantifications) 10.4 MB
ENCFF586MNL.bigWig bigWig (plus strand signal of all reads) 88.3 MB
ENCFF613HXG.fastq fastq (reads) 2.6 GB
ENCFF628RXL.bigWig bigWig (plus strand signal of all reads) 62.6 MB
ENCFF636DWV.bigWig bigWig (minus strand signal of unique reads) 55.3 MB
ENCFF638HUN.bigWig bigWig (plus strand signal of unique reads) 76.2 MB
ENCFF654MJI.bigWig bigWig (minus strand signal of all reads) 75.6 MB
ENCFF655NDB.bigWig bigWig (plus strand signal of all reads) 87.5 MB
ENCFF657EMJ.bigWig bigWig (minus strand signal of unique reads) 77.5 MB
ENCFF675TNO.bam bam (alignments) 2.8 GB
ENCFF696XBU.bigWig bigWig (minus strand signal of unique reads) 74.3 MB
ENCFF698RMZ.bigWig bigWig (plus strand signal of unique reads) 79.6 MB
ENCFF707PBT.bam bam (transcriptome alignments) 3.3 GB
ENCFF713EZQ.bigWig bigWig (minus strand signal of all reads) 86.2 MB
ENCFF731YXN.bam bam (transcriptome alignments) 3.7 GB
ENCFF732AEX.bigWig bigWig (minus strand signal of all reads) 53.3 MB
ENCFF734VOR.tsv tsv (transcript quantifications) 27.2 MB
ENCFF736HLH.bigWig bigWig (plus strand signal of unique reads) 72.6 MB
ENCFF758JCF.bigWig bigWig (minus strand signal of unique reads) 55.3 MB
ENCFF787UTV.bigWig bigWig (minus strand signal of all reads) 61.6 MB
ENCFF817JJV.bigWig bigWig (plus strand signal of all reads) 77.2 MB
ENCFF824MEC.bigWig bigWig (plus strand signal of unique reads) 80.1 MB
ENCFF845TTA.bigWig bigWig (minus strand signal of unique reads) 49.7 MB
ENCFF852HIM.bigWig bigWig (plus strand signal of all reads) 57.3 MB
ENCFF879RYD.tsv tsv (transcript quantifications) 24.9 MB
ENCFF883OEQ.bam bam (alignments) 3.8 GB
ENCFF894IBO.bigWig bigWig (plus strand signal of all reads) 62.6 MB
ENCFF899NMK.bigWig bigWig (minus strand signal of unique reads) 74.3 MB
ENCFF909SGR.tsv tsv (gene quantifications) 9.1 MB
ENCFF930RPL.bigWig bigWig (plus strand signal of unique reads) 56.7 MB
ENCFF944EJP.bigWig bigWig (plus strand signal of unique reads) 76.4 MB
ENCFF947BKA.bigWig bigWig (plus strand signal of unique reads) 54.4 MB
ENCFF953AYO.bigWig bigWig (minus strand signal of all reads) 60.7 MB
ENCFF958GTO.bigWig bigWig (minus strand signal of unique reads) 70.4 MB
ENCFF966QBV.bam bam (alignments) 4.5 GB
ENCFF973UAZ.tsv tsv (transcript quantifications) 25.3 MB
ENCFF979BGR.bam bam (alignments) 4.7 GB
ENCFF989HXZ.fastq fastq (reads) 2.5 GB
ENCFF989MEA.bigWig bigWig (minus strand signal of unique reads) 52.3 MB
ENCFF994PNJ.bigWig bigWig (plus strand signal of unique reads) 53.5 MB
ENCSR856ZRV ENCSR · via encode_api

Control shRNA against no target in HepG2 cells followed by RNA-seq. (NT_BGHLV17)

Homo sapiens

99 data files
FileTypeSize
ENCFF012TSK.bigWig bigWig (plus strand signal of all reads) 77.1 MB
ENCFF014PVR.bigWig bigWig (minus strand signal of unique reads) 38.0 MB
ENCFF024UIS.bigWig bigWig (plus strand signal of unique reads) 39.2 MB
ENCFF031FNT.bigWig bigWig (plus strand signal of unique reads) 63.7 MB
ENCFF032YPC.bam bam (transcriptome alignments) 4.8 GB
ENCFF038LUH.bam bam (alignments) 3.3 GB
ENCFF038MLS.bigWig bigWig (minus strand signal of unique reads) 69.3 MB
ENCFF048EHB.bigWig bigWig (plus strand signal of unique reads) 68.5 MB
ENCFF052FFF.bigWig bigWig (plus strand signal of unique reads) 44.5 MB
ENCFF052VTG.bigWig bigWig (plus strand signal of unique reads) 65.4 MB
ENCFF069BKV.tsv tsv (gene quantifications) 9.4 MB
ENCFF069ZJS.bam bam (transcriptome alignments) 5.0 GB
ENCFF078VYI.bigWig bigWig (minus strand signal of unique reads) 40.8 MB
ENCFF113FMN.bigWig bigWig (plus strand signal of all reads) 72.1 MB
ENCFF119BMI.bigWig bigWig (minus strand signal of unique reads) 61.7 MB
ENCFF122VBO.bam bam (alignments) 4.0 GB
ENCFF142XRA.bigWig bigWig (minus strand signal of all reads) 77.1 MB
ENCFF145SSQ.bigWig bigWig (minus strand signal of all reads) 75.2 MB
ENCFF147OBM.bigWig bigWig (minus strand signal of all reads) 77.6 MB
ENCFF164KFS.tsv tsv (gene quantifications) 9.1 MB
ENCFF176FHW.bam bam (alignments) 3.6 GB
ENCFF201XBC.bam bam (transcriptome alignments) 4.3 GB
ENCFF211KLV.bam bam (transcriptome alignments) 4.8 GB
ENCFF211MBD.tsv tsv (transcript quantifications) 25.3 MB
ENCFF224AYI.bigWig bigWig (plus strand signal of unique reads) 42.0 MB
ENCFF231SUG.tsv tsv (gene quantifications) 9.1 MB
ENCFF236SFU.bam bam (alignments) 2.9 GB
ENCFF242WXN.bam bam (alignments) 3.3 GB
ENCFF247AXC.bam bam (transcriptome alignments) 4.4 GB
ENCFF247JLU.tsv tsv (transcript quantifications) 24.9 MB
ENCFF249RFJ.tsv tsv (gene quantifications) 10.4 MB
ENCFF255PEN.bigWig bigWig (minus strand signal of unique reads) 67.5 MB
ENCFF255UJH.tsv tsv (transcript quantifications) 29.8 MB
ENCFF260RDP.tsv tsv (gene quantifications) 10.4 MB
ENCFF267WHR.bigWig bigWig (minus strand signal of unique reads) 68.1 MB
ENCFF271DUN.tsv tsv (transcript quantifications) 29.8 MB
ENCFF278TEH.fastq fastq (reads) 2.1 GB
ENCFF282BUB.bigWig bigWig (plus strand signal of all reads) 79.3 MB
ENCFF299CAR.bigWig bigWig (minus strand signal of unique reads) 65.6 MB
ENCFF313GBY.bigWig bigWig (minus strand signal of all reads) 47.4 MB
ENCFF313GGK.bigWig bigWig (plus strand signal of unique reads) 69.6 MB
ENCFF316ODX.bigWig bigWig (plus strand signal of all reads) 76.7 MB
ENCFF317QYL.bam bam (alignments) 3.3 GB
ENCFF343WPT.bam bam (alignments) 3.6 GB
ENCFF358UGW.bigWig bigWig (minus strand signal of unique reads) 69.9 MB
ENCFF364TAH.bigWig bigWig (minus strand signal of all reads) 40.3 MB
ENCFF378WGS.bigWig bigWig (minus strand signal of all reads) 77.6 MB
ENCFF385GEX.fastq fastq (reads) 967.2 MB
ENCFF400LBM.bigWig bigWig (minus strand signal of unique reads) 67.8 MB
ENCFF400PEH.bigWig bigWig (minus strand signal of unique reads) 63.5 MB
ENCFF403CZA.fastq fastq (reads) 2.1 GB
ENCFF422OLQ.bigWig bigWig (plus strand signal of unique reads) 72.1 MB
ENCFF430ZBY.fastq fastq (reads) 980.0 MB
ENCFF435FBM.bam bam (alignments) 4.0 GB
ENCFF439TTO.bam bam (transcriptome alignments) 5.4 GB
ENCFF462QFP.bam bam (alignments) 1.5 GB
ENCFF464SJH.bigWig bigWig (minus strand signal of unique reads) 43.2 MB
ENCFF468TVS.bigWig bigWig (plus strand signal of unique reads) 70.3 MB
ENCFF477GPR.tsv tsv (gene quantifications) 9.4 MB
ENCFF492YTW.bigWig bigWig (plus strand signal of unique reads) 72.0 MB
ENCFF499IFC.bigWig bigWig (plus strand signal of all reads) 44.2 MB
ENCFF506QJW.bigWig bigWig (minus strand signal of all reads) 68.0 MB
ENCFF528NWG.bam bam (alignments) 3.0 GB
ENCFF533PXL.tsv tsv (gene quantifications) 9.1 MB
ENCFF539DEA.bigWig bigWig (plus strand signal of unique reads) 67.5 MB
ENCFF540VXD.bigWig bigWig (plus strand signal of all reads) 68.2 MB
ENCFF545VPX.bigWig bigWig (plus strand signal of unique reads) 71.4 MB
ENCFF572NPL.bam bam (alignments) 1.7 GB
ENCFF573MSH.bigWig bigWig (minus strand signal of unique reads) 64.0 MB
ENCFF574AQT.bigWig bigWig (plus strand signal of unique reads) 69.9 MB
ENCFF580UNY.bigWig bigWig (plus strand signal of all reads) 48.3 MB
ENCFF604JXL.bigWig bigWig (plus strand signal of all reads) 77.1 MB
ENCFF629QTI.bigWig bigWig (plus strand signal of all reads) 70.1 MB
ENCFF645RSB.bigWig bigWig (minus strand signal of unique reads) 66.4 MB
ENCFF659PXT.bigWig bigWig (plus strand signal of all reads) 69.5 MB
ENCFF675UML.bam bam (alignments) 3.5 GB
ENCFF682WAB.bigWig bigWig (minus strand signal of unique reads) 69.9 MB
ENCFF689YCR.bam bam (alignments) 3.9 GB
ENCFF705LNP.bam bam (alignments) 1.5 GB
ENCFF709GAU.tsv tsv (transcript quantifications) 25.3 MB
ENCFF750DOX.bigWig bigWig (minus strand signal of all reads) 66.6 MB
ENCFF767OCX.bigWig bigWig (minus strand signal of all reads) 75.5 MB
ENCFF771YSZ.bigWig bigWig (plus strand signal of all reads) 41.3 MB
ENCFF794MXC.tsv tsv (transcript quantifications) 27.3 MB
ENCFF799TEX.bigWig bigWig (plus strand signal of unique reads) 66.1 MB
ENCFF806PJN.tsv tsv (transcript quantifications) 27.3 MB
ENCFF835XGD.bigWig bigWig (minus strand signal of all reads) 68.5 MB
ENCFF868DTJ.bigWig bigWig (minus strand signal of all reads) 70.3 MB
ENCFF880XPK.bigWig bigWig (minus strand signal of all reads) 70.5 MB
ENCFF895UGW.tsv tsv (transcript quantifications) 24.8 MB
ENCFF899HXY.tsv tsv (transcript quantifications) 24.9 MB
ENCFF908WEH.bigWig bigWig (plus strand signal of all reads) 79.2 MB
ENCFF910EGI.fastq fastq (reads) 1007.8 MB
ENCFF913KAT.bigWig bigWig (plus strand signal of all reads) 78.5 MB
ENCFF922CDR.fastq fastq (reads) 935.7 MB
ENCFF955ZLB.bigWig bigWig (plus strand signal of all reads) 71.7 MB
ENCFF958LXD.bigWig bigWig (minus strand signal of all reads) 43.2 MB
ENCFF961VFX.bigWig bigWig (minus strand signal of all reads) 75.5 MB
ENCFF979ETI.bam bam (transcriptome alignments) 2.1 GB
ENCSR395FYF ENCSR · via encode_api

RNA-seq on K562 cells treated with an shRNA knockdown against AUH. (AUH_BGKLV38)

Homo sapiens

92 data files
FileTypeSize
ENCFF008IBD.tsv tsv (gene quantifications) 9.5 MB
ENCFF012VSQ.bigWig bigWig (plus strand signal of unique reads) 102.9 MB
ENCFF020UAW.tsv tsv (gene quantifications) 10.4 MB
ENCFF042ERW.bigWig bigWig (plus strand signal of unique reads) 111.9 MB
ENCFF047XXY.bigWig bigWig (minus strand signal of unique reads) 100.0 MB
ENCFF052TYH.bigWig bigWig (plus strand signal of all reads) 120.6 MB
ENCFF057FDU.tsv tsv (gene quantifications) 9.1 MB
ENCFF059CWS.bigWig bigWig (minus strand signal of unique reads) 109.4 MB
ENCFF068HMU.bigWig bigWig (plus strand signal of all reads) 117.1 MB
ENCFF077DAG.bigWig bigWig (plus strand signal of unique reads) 106.5 MB
ENCFF089CSU.bigWig bigWig (plus strand signal of unique reads) 116.0 MB
ENCFF100QGP.fastq fastq (reads) 3.7 GB
ENCFF130DBW.tsv tsv (transcript quantifications) 24.9 MB
ENCFF133WBG.bigWig bigWig (plus strand signal of all reads) 128.6 MB
ENCFF139ACX.tsv tsv (differential expression quantifications) 4.3 MB
ENCFF156XKW.bam bam (alignments) 6.5 GB
ENCFF157DNT.bam bam (alignments) 6.3 GB
ENCFF175EJU.tsv tsv (gene quantifications) 10.4 MB
ENCFF177UJD.bigWig bigWig (minus strand signal of all reads) 126.0 MB
ENCFF179HKR.tsv tsv (transcript quantifications) 27.4 MB
ENCFF204BIY.bam bam (alignments) 6.5 GB
ENCFF212GJH.tar tar (differential splicing quantifications) 18.6 MB
ENCFF213CZT.bigWig bigWig (plus strand signal of all reads) 116.6 MB
ENCFF223QZJ.tar tar (differential splicing quantifications) 5.7 MB
ENCFF271MGF.bigWig bigWig (minus strand signal of all reads) 127.1 MB
ENCFF297HYF.bigWig bigWig (minus strand signal of unique reads) 113.4 MB
ENCFF309NZX.bam bam (transcriptome alignments) 8.1 GB
ENCFF314RBD.bam bam (transcriptome alignments) 8.6 GB
ENCFF339YLA.bigWig bigWig (plus strand signal of all reads) 124.2 MB
ENCFF340ENT.bam bam (transcriptome alignments) 8.2 GB
ENCFF347DNO.bigWig bigWig (minus strand signal of all reads) 110.6 MB
ENCFF348OFH.tsv tsv (gene quantifications) 9.5 MB
ENCFF360HRV.bigWig bigWig (minus strand signal of all reads) 122.8 MB
ENCFF367HLW.bigWig bigWig (minus strand signal of all reads) 121.7 MB
ENCFF380QLT.bigWig bigWig (minus strand signal of unique reads) 105.8 MB
ENCFF382BHN.bigWig bigWig (plus strand signal of all reads) 127.6 MB
ENCFF393GJG.bigWig bigWig (plus strand signal of unique reads) 111.8 MB
ENCFF395IAV.tsv tsv (gene quantifications) 9.1 MB
ENCFF416MUF.tsv tsv (differential expression quantifications) 5.4 MB
ENCFF433CDQ.bigWig bigWig (minus strand signal of all reads) 115.2 MB
ENCFF446QUO.bigWig bigWig (minus strand signal of unique reads) 103.8 MB
ENCFF467HML.tsv tsv (differential expression quantifications) 2.8 MB
ENCFF469WRK.bigWig bigWig (minus strand signal of unique reads) 112.6 MB
ENCFF472WGE.bam bam (alignments) 6.4 GB
ENCFF474PIN.bigWig bigWig (plus strand signal of all reads) 123.3 MB
ENCFF495RSP.bigWig bigWig (plus strand signal of all reads) 112.3 MB
ENCFF497CXI.bam bam (transcriptome alignments) 8.7 GB
ENCFF498KRM.bigWig bigWig (plus strand signal of all reads) 128.6 MB
ENCFF526UQR.bigWig bigWig (plus strand signal of unique reads) 109.5 MB
ENCFF553FPT.bigWig bigWig (plus strand signal of unique reads) 108.8 MB
ENCFF558IPT.bigWig bigWig (minus strand signal of unique reads) 104.2 MB
ENCFF573WOW.bam bam (transcriptome alignments) 9.9 GB
ENCFF575BBV.tar tar (differential splicing quantifications) 6.2 MB
ENCFF582HKP.bigWig bigWig (plus strand signal of unique reads) 111.9 MB
ENCFF592EWU.bigWig bigWig (minus strand signal of unique reads) 109.4 MB
ENCFF609LMR.bam bam (alignments) 6.7 GB
ENCFF609YAM.tsv tsv (differential expression quantifications) 1.6 MB
ENCFF613DAM.tsv tsv (differential expression quantifications) 2.0 MB
ENCFF613DPG.fastq fastq (reads) 3.5 GB
ENCFF617XMD.tsv tsv (transcript quantifications) 27.5 MB
ENCFF622BIH.bigWig bigWig (minus strand signal of unique reads) 112.5 MB
ENCFF638WSL.bigWig bigWig (plus strand signal of all reads) 124.3 MB
ENCFF686KTW.bam bam (alignments) 5.2 GB
ENCFF691KXE.bigWig bigWig (minus strand signal of all reads) 122.7 MB
ENCFF692CVZ.tsv tsv (transcript quantifications) 24.9 MB
ENCFF693CQG.bam bam (alignments) 5.3 GB
ENCFF706IGL.bigWig bigWig (plus strand signal of unique reads) 115.2 MB
ENCFF716YEU.bam bam (transcriptome alignments) 9.4 GB
ENCFF734FHW.bam bam (alignments) 6.7 GB
ENCFF740VJV.bigWig bigWig (minus strand signal of unique reads) 109.1 MB
ENCFF775SEK.tsv tsv (transcript quantifications) 29.8 MB
ENCFF780GRD.bigWig bigWig (plus strand signal of all reads) 114.9 MB
ENCFF798IMP.bam bam (alignments) 5.1 GB
ENCFF799QFE.bigWig bigWig (minus strand signal of all reads) 127.1 MB
ENCFF803SMC.tsv tsv (transcript quantifications) 25.3 MB
ENCFF814FJB.bigWig bigWig (minus strand signal of all reads) 118.5 MB
ENCFF815CWP.bigWig bigWig (minus strand signal of all reads) 112.8 MB
ENCFF820VOB.bigWig bigWig (minus strand signal of all reads) 110.1 MB
ENCFF835VLB.bam bam (alignments) 5.2 GB
ENCFF853LDK.bigWig bigWig (plus strand signal of unique reads) 106.4 MB
ENCFF865VZW.tsv tsv (transcript quantifications) 29.8 MB
ENCFF868DGD.bam bam (alignments) 5.1 GB
ENCFF880TMZ.bigWig bigWig (plus strand signal of all reads) 112.0 MB
ENCFF896RFR.bigWig bigWig (plus strand signal of unique reads) 111.6 MB
ENCFF897IJA.fastq fastq (reads) 3.5 GB
ENCFF899DNA.bigWig bigWig (minus strand signal of unique reads) 108.8 MB
ENCFF902ZBX.bigWig bigWig (minus strand signal of unique reads) 107.2 MB
ENCFF911FOZ.bigWig bigWig (minus strand signal of all reads) 114.9 MB
ENCFF929PGD.fastq fastq (reads) 3.6 GB
ENCFF956HDW.bam bam (alignments) 5.2 GB
ENCFF958BUY.bigWig bigWig (plus strand signal of unique reads) 115.4 MB
ENCFF997WGC.tsv tsv (transcript quantifications) 25.3 MB
ENCSR237IWZ ENCSR · via encode_api

shRNA knockdown against KIAA1967 in HepG2 cells followed by RNA-seq. (KIAA1967_BGHLV18)

Homo sapiens

92 data files
FileTypeSize
ENCFF039KBZ.bam bam (alignments) 3.2 GB
ENCFF045LZS.bigWig bigWig (plus strand signal of unique reads) 64.4 MB
ENCFF063OMG.bigWig bigWig (plus strand signal of unique reads) 69.0 MB
ENCFF066MMV.bam bam (alignments) 2.5 GB
ENCFF070YVI.bigWig bigWig (minus strand signal of unique reads) 62.8 MB
ENCFF089FAQ.fastq fastq (reads) 2.1 GB
ENCFF090MZJ.bigWig bigWig (plus strand signal of unique reads) 65.7 MB
ENCFF093GFB.bigWig bigWig (plus strand signal of unique reads) 68.6 MB
ENCFF094KVD.tsv tsv (transcript quantifications) 27.3 MB
ENCFF105CWM.bigWig bigWig (plus strand signal of all reads) 64.5 MB
ENCFF123TCY.bam bam (alignments) 2.5 GB
ENCFF137UIW.bigWig bigWig (minus strand signal of all reads) 57.7 MB
ENCFF174BFN.bigWig bigWig (plus strand signal of unique reads) 58.2 MB
ENCFF186LWR.bigWig bigWig (minus strand signal of unique reads) 60.9 MB
ENCFF189DQN.tsv tsv (gene quantifications) 10.4 MB
ENCFF192BON.bigWig bigWig (plus strand signal of unique reads) 53.2 MB
ENCFF216UHM.bam bam (transcriptome alignments) 3.7 GB
ENCFF231RDM.bigWig bigWig (minus strand signal of unique reads) 57.3 MB
ENCFF239EVJ.bam bam (transcriptome alignments) 4.2 GB
ENCFF249LYD.bam bam (alignments) 3.0 GB
ENCFF249ZLM.bam bam (transcriptome alignments) 4.8 GB
ENCFF264FJB.bigWig bigWig (minus strand signal of all reads) 55.9 MB
ENCFF288FML.tsv tsv (gene quantifications) 10.4 MB
ENCFF289HQQ.tsv tsv (transcript quantifications) 27.2 MB
ENCFF301VSA.bigWig bigWig (minus strand signal of unique reads) 67.2 MB
ENCFF312OPC.bigWig bigWig (plus strand signal of all reads) 75.1 MB
ENCFF316FKD.bigWig bigWig (plus strand signal of unique reads) 55.2 MB
ENCFF332VDI.bigWig bigWig (minus strand signal of all reads) 63.4 MB
ENCFF334JVQ.bigWig bigWig (minus strand signal of unique reads) 53.9 MB
ENCFF336CRM.tar tar (differential splicing quantifications) 3.3 MB
ENCFF344EPS.bigWig bigWig (minus strand signal of unique reads) 66.7 MB
ENCFF348QYI.bigWig bigWig (minus strand signal of all reads) 68.6 MB
ENCFF348SRT.bigWig bigWig (plus strand signal of unique reads) 58.4 MB
ENCFF352HEI.bigWig bigWig (minus strand signal of all reads) 73.8 MB
ENCFF352LPV.bigWig bigWig (minus strand signal of all reads) 63.8 MB
ENCFF360HYU.bigWig bigWig (minus strand signal of unique reads) 54.8 MB
ENCFF360XEZ.bigWig bigWig (plus strand signal of all reads) 64.5 MB
ENCFF385WBS.tsv tsv (differential expression quantifications) 1.8 MB
ENCFF397OTU.bam bam (transcriptome alignments) 3.7 GB
ENCFF398ULY.tsv tsv (gene quantifications) 9.1 MB
ENCFF423HWY.bigWig bigWig (minus strand signal of unique reads) 56.9 MB
ENCFF454VOP.bigWig bigWig (plus strand signal of unique reads) 58.9 MB
ENCFF466ATR.tsv tsv (gene quantifications) 9.1 MB
ENCFF491XQX.bam bam (alignments) 3.0 GB
ENCFF501WET.tsv tsv (transcript quantifications) 29.7 MB
ENCFF502OAV.bigWig bigWig (minus strand signal of unique reads) 67.1 MB
ENCFF513NYX.bam bam (alignments) 2.4 GB
ENCFF541IJL.tsv tsv (transcript quantifications) 24.9 MB
ENCFF558RXG.bigWig bigWig (plus strand signal of all reads) 68.2 MB
ENCFF561EAJ.bam bam (alignments) 3.2 GB
ENCFF582PBD.bigWig bigWig (minus strand signal of unique reads) 51.8 MB
ENCFF584JZF.bigWig bigWig (plus strand signal of unique reads) 69.0 MB
ENCFF590HHA.tar tar (differential splicing quantifications) 14.5 MB
ENCFF592DJQ.bigWig bigWig (plus strand signal of unique reads) 62.7 MB
ENCFF592ETP.tsv tsv (transcript quantifications) 25.3 MB
ENCFF594BBT.bam bam (alignments) 3.2 GB
ENCFF595XTI.tar tar (differential splicing quantifications) 2.8 MB
ENCFF601ZPU.bigWig bigWig (plus strand signal of all reads) 57.1 MB
ENCFF605AUV.bigWig bigWig (minus strand signal of all reads) 67.0 MB
ENCFF623NRC.bigWig bigWig (minus strand signal of all reads) 62.7 MB
ENCFF630LSV.fastq fastq (reads) 1.6 GB
ENCFF633QOF.bigWig bigWig (minus strand signal of all reads) 73.9 MB
ENCFF637YTY.tsv tsv (differential expression quantifications) 5.7 MB
ENCFF660XEW.fastq fastq (reads) 1.6 GB
ENCFF673CRK.bam bam (transcriptome alignments) 4.8 GB
ENCFF677ZAR.bam bam (transcriptome alignments) 5.4 GB
ENCFF711HYW.fastq fastq (reads) 2.1 GB
ENCFF734UFY.bam bam (alignments) 3.7 GB
ENCFF735IMU.tsv tsv (gene quantifications) 9.4 MB
ENCFF747KHH.bigWig bigWig (minus strand signal of all reads) 63.4 MB
ENCFF749DLX.bigWig bigWig (plus strand signal of all reads) 75.3 MB
ENCFF752LRZ.tsv tsv (differential expression quantifications) 2.0 MB
ENCFF761WUZ.tsv tsv (transcript quantifications) 24.9 MB
ENCFF785IAI.bigWig bigWig (minus strand signal of all reads) 74.0 MB
ENCFF785SMX.bigWig bigWig (plus strand signal of all reads) 65.2 MB
ENCFF794LCL.tsv tsv (transcript quantifications) 29.8 MB
ENCFF809UWJ.bigWig bigWig (plus strand signal of all reads) 75.3 MB
ENCFF842ZLS.bigWig bigWig (plus strand signal of all reads) 63.7 MB
ENCFF846LFU.tsv tsv (gene quantifications) 9.4 MB
ENCFF867UDD.bam bam (alignments) 2.9 GB
ENCFF870TPS.bam bam (alignments) 3.8 GB
ENCFF871EFY.bigWig bigWig (minus strand signal of unique reads) 63.9 MB
ENCFF872UVG.tsv tsv (differential expression quantifications) 4.1 MB
ENCFF903FLN.bigWig bigWig (plus strand signal of all reads) 59.8 MB
ENCFF905UQU.bigWig bigWig (minus strand signal of unique reads) 56.8 MB
ENCFF911LRG.bigWig bigWig (plus strand signal of all reads) 69.9 MB
ENCFF935ZTW.tsv tsv (differential expression quantifications) 2.8 MB
ENCFF951CNF.bigWig bigWig (plus strand signal of unique reads) 56.2 MB
ENCFF972GDB.bigWig bigWig (plus strand signal of all reads) 58.7 MB
ENCFF984TLH.bigWig bigWig (minus strand signal of all reads) 58.7 MB
ENCFF988DHB.tsv tsv (transcript quantifications) 25.3 MB
ENCFF998XFR.bam bam (alignments) 3.8 GB
ENCSR331OJY ENCSR · via encode_api

Control ChIP-seq in K562

Homo sapiens

14 data files
FileTypeSize
ENCFF092OEQ.bam bam (alignments) 1.2 GB
ENCFF097XVE.bam bam (alignments) 1.3 GB
ENCFF183RWB.fastq fastq (reads) 1.1 GB
ENCFF323AVQ.bam bam (unfiltered alignments) 1.6 GB
ENCFF413LCN.bam bam (alignments) 1.2 GB
ENCFF453JAK.bam bam (alignments) 922.4 MB
ENCFF466LEC.bam bam (alignments) 876.5 MB
ENCFF584DCN.bam bam (unfiltered alignments) 1.6 GB
ENCFF616UEH.bam bam (unfiltered alignments) 1.1 GB
ENCFF833ZOA.fastq fastq (reads) 805.3 MB
ENCFF848AQB.bam bam (unfiltered alignments) 1.1 GB
ENCFF863RCR.bam bam (unfiltered alignments) 1.6 GB
ENCFF932JHA.bam bam (unfiltered alignments) 1.1 GB
ENCFF936VXD.bam bam (alignments) 875.6 MB
ENCSR079LMZ ENCSR · via encode_api

RNA-seq on K562 cells treated with an shRNA knockdown against DNAJC21. (DNAJC21_BGKLV24)

Homo sapiens

92 data files
FileTypeSize
ENCFF017FCR.tsv tsv (gene quantifications) 9.4 MB
ENCFF027LQB.bam bam (transcriptome alignments) 3.6 GB
ENCFF029OIU.bigWig bigWig (plus strand signal of unique reads) 56.3 MB
ENCFF037UKG.bigWig bigWig (minus strand signal of all reads) 70.8 MB
ENCFF039XRD.fastq fastq (reads) 1.6 GB
ENCFF053VCF.bam bam (alignments) 2.6 GB
ENCFF054VZC.bigWig bigWig (minus strand signal of all reads) 63.8 MB
ENCFF099ZDA.bigWig bigWig (plus strand signal of all reads) 62.9 MB
ENCFF104PAD.bam bam (alignments) 3.0 GB
ENCFF106ASC.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF113MFJ.bigWig bigWig (minus strand signal of all reads) 59.3 MB
ENCFF115XMY.bam bam (transcriptome alignments) 4.1 GB
ENCFF135EBK.bigWig bigWig (minus strand signal of unique reads) 58.6 MB
ENCFF136DYP.bigWig bigWig (plus strand signal of all reads) 69.0 MB
ENCFF140PXY.bam bam (alignments) 3.1 GB
ENCFF163PJK.bigWig bigWig (plus strand signal of unique reads) 62.6 MB
ENCFF178DOH.bigWig bigWig (plus strand signal of unique reads) 58.8 MB
ENCFF179VYY.bigWig bigWig (plus strand signal of all reads) 71.7 MB
ENCFF200RQU.tsv tsv (gene quantifications) 10.4 MB
ENCFF218SRQ.bigWig bigWig (plus strand signal of all reads) 61.4 MB
ENCFF236HKE.bigWig bigWig (minus strand signal of all reads) 64.1 MB
ENCFF236SYA.bam bam (alignments) 2.6 GB
ENCFF244BQM.bam bam (alignments) 3.2 GB
ENCFF244LOJ.tsv tsv (differential expression quantifications) 2.6 MB
ENCFF245PDM.bigWig bigWig (plus strand signal of all reads) 64.8 MB
ENCFF251OFN.bigWig bigWig (minus strand signal of all reads) 69.1 MB
ENCFF260JDW.bam bam (transcriptome alignments) 3.6 GB
ENCFF266DIJ.bam bam (alignments) 2.6 GB
ENCFF271ZYT.bam bam (alignments) 3.1 GB
ENCFF297NHR.tsv tsv (gene quantifications) 9.1 MB
ENCFF300JEY.tsv tsv (gene quantifications) 10.4 MB
ENCFF312XCR.tsv tsv (transcript quantifications) 29.8 MB
ENCFF336PGN.tsv tsv (transcript quantifications) 25.3 MB
ENCFF337ALJ.bigWig bigWig (plus strand signal of all reads) 64.4 MB
ENCFF365EBB.tsv tsv (transcript quantifications) 27.3 MB
ENCFF395TMC.bigWig bigWig (minus strand signal of unique reads) 57.6 MB
ENCFF398HDQ.bam bam (alignments) 2.6 GB
ENCFF414IFE.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF455ROK.bigWig bigWig (minus strand signal of unique reads) 54.7 MB
ENCFF466EOA.bigWig bigWig (minus strand signal of all reads) 68.1 MB
ENCFF467ZQZ.fastq fastq (reads) 1.8 GB
ENCFF533DPO.bigWig bigWig (minus strand signal of unique reads) 61.5 MB
ENCFF547YDV.tar tar (differential splicing quantifications) 3.0 MB
ENCFF548ANA.bigWig bigWig (plus strand signal of unique reads) 63.0 MB
ENCFF549TOU.bigWig bigWig (minus strand signal of unique reads) 54.7 MB
ENCFF564DYT.tsv tsv (transcript quantifications) 29.8 MB
ENCFF569FAB.bigWig bigWig (minus strand signal of unique reads) 60.9 MB
ENCFF574CEC.bam bam (alignments) 3.2 GB
ENCFF575YNP.tsv tsv (differential expression quantifications) 4.1 MB
ENCFF589MKP.bam bam (alignments) 3.1 GB
ENCFF590BEU.bigWig bigWig (minus strand signal of all reads) 63.3 MB
ENCFF591TWR.bam bam (transcriptome alignments) 3.7 GB
ENCFF592CNX.tar tar (differential splicing quantifications) 3.3 MB
ENCFF603WQR.bigWig bigWig (plus strand signal of unique reads) 60.2 MB
ENCFF604IXT.bigWig bigWig (minus strand signal of all reads) 62.2 MB
ENCFF624QGG.tsv tsv (gene quantifications) 9.4 MB
ENCFF627ITL.bam bam (transcriptome alignments) 4.2 GB
ENCFF628LFL.bigWig bigWig (plus strand signal of unique reads) 63.0 MB
ENCFF630POJ.bigWig bigWig (plus strand signal of unique reads) 56.2 MB
ENCFF631TFA.bigWig bigWig (plus strand signal of unique reads) 63.1 MB
ENCFF656BRS.bigWig bigWig (plus strand signal of all reads) 60.6 MB
ENCFF674ZOT.bigWig bigWig (minus strand signal of all reads) 70.8 MB
ENCFF685RWC.bigWig bigWig (minus strand signal of unique reads) 60.9 MB
ENCFF687KIL.bigWig bigWig (plus strand signal of all reads) 70.0 MB
ENCFF688CUT.bam bam (alignments) 2.6 GB
ENCFF695MZA.tsv tsv (transcript quantifications) 24.9 MB
ENCFF703AKT.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF721KPZ.bigWig bigWig (plus strand signal of unique reads) 62.5 MB
ENCFF727JEB.bigWig bigWig (plus strand signal of unique reads) 60.0 MB
ENCFF731AEJ.bigWig bigWig (minus strand signal of unique reads) 58.7 MB
ENCFF749OIE.bigWig bigWig (plus strand signal of all reads) 71.1 MB
ENCFF759DTN.tsv tsv (transcript quantifications) 27.3 MB
ENCFF762MEC.bigWig bigWig (minus strand signal of unique reads) 58.9 MB
ENCFF773HJJ.bigWig bigWig (minus strand signal of unique reads) 61.6 MB
ENCFF784SBW.bigWig bigWig (minus strand signal of unique reads) 61.2 MB
ENCFF790CTF.bigWig bigWig (plus strand signal of all reads) 71.6 MB
ENCFF793YXQ.tar tar (differential splicing quantifications) 12.8 MB
ENCFF794HTC.fastq fastq (reads) 1.6 GB
ENCFF800AGI.fastq fastq (reads) 1.8 GB
ENCFF804EBW.bigWig bigWig (plus strand signal of unique reads) 62.3 MB
ENCFF833XFC.tsv tsv (gene quantifications) 9.1 MB
ENCFF836LEJ.bigWig bigWig (plus strand signal of all reads) 65.0 MB
ENCFF843BUO.bigWig bigWig (minus strand signal of all reads) 69.1 MB
ENCFF857TFY.bam bam (transcriptome alignments) 3.7 GB
ENCFF874NAQ.bam bam (alignments) 2.6 GB
ENCFF898MOT.bigWig bigWig (minus strand signal of unique reads) 61.7 MB
ENCFF905SJR.tsv tsv (transcript quantifications) 25.3 MB
ENCFF918QLN.tsv tsv (transcript quantifications) 24.9 MB
ENCFF925VYC.bigWig bigWig (minus strand signal of all reads) 70.2 MB
ENCFF952PPV.bigWig bigWig (plus strand signal of all reads) 70.0 MB
ENCFF965TDW.bigWig bigWig (plus strand signal of unique reads) 60.2 MB
ENCFF967VGP.bigWig bigWig (minus strand signal of all reads) 60.3 MB
ENCSR257OYO ENCSR · via encode_api

eCLIP control experiment on HepG2 against NCBP2

Homo sapiens

8 data files
FileTypeSize
ENCFF016MTU.fastq fastq (reads) 623.2 MB
ENCFF124RGI.bigWig bigWig (minus strand signal of unique reads) 14.3 MB
ENCFF232YSX.bam bam (alignments) 326.9 MB
ENCFF244JYE.bigWig bigWig (plus strand signal of unique reads) 14.3 MB
ENCFF304ECY.fastq fastq (reads) 633.7 MB
ENCFF388GHK.bigWig bigWig (plus strand signal of unique reads) 14.5 MB
ENCFF838MYV.bam bam (alignments) 332.0 MB
ENCFF870FZW.bigWig bigWig (minus strand signal of unique reads) 14.0 MB
ENCSR312SRB ENCSR · via encode_api

shRNA knockdown against SRP68 in K562 cells followed by RNA-seq. (SRP68_BGKLV19)

Homo sapiens

92 data files
FileTypeSize
ENCFF002ZTU.bam bam (alignments) 3.9 GB
ENCFF017CSZ.bigWig bigWig (plus strand signal of all reads) 83.3 MB
ENCFF018DAH.bam bam (alignments) 3.8 GB
ENCFF032UFK.bigWig bigWig (plus strand signal of all reads) 85.0 MB
ENCFF048JUP.bam bam (alignments) 3.1 GB
ENCFF080GLV.tar tar (differential splicing quantifications) 14.5 MB
ENCFF082BHQ.tsv tsv (gene quantifications) 9.4 MB
ENCFF084MSI.bigWig bigWig (minus strand signal of all reads) 84.1 MB
ENCFF088YDS.bam bam (alignments) 3.2 GB
ENCFF112IHT.tsv tsv (gene quantifications) 10.4 MB
ENCFF136NGD.bigWig bigWig (minus strand signal of unique reads) 73.3 MB
ENCFF152MCE.bigWig bigWig (minus strand signal of unique reads) 73.8 MB
ENCFF159JRF.bigWig bigWig (minus strand signal of all reads) 84.2 MB
ENCFF162EVI.bam bam (transcriptome alignments) 4.9 GB
ENCFF179UTV.tsv tsv (transcript quantifications) 29.8 MB
ENCFF182ZUG.tsv tsv (transcript quantifications) 29.8 MB
ENCFF188ECP.bigWig bigWig (plus strand signal of all reads) 83.8 MB
ENCFF222KRT.bigWig bigWig (minus strand signal of unique reads) 70.9 MB
ENCFF233IUZ.fastq fastq (reads) 2.0 GB
ENCFF267HZY.tsv tsv (transcript quantifications) 27.3 MB
ENCFF273IEO.bam bam (alignments) 3.8 GB
ENCFF297SJN.bigWig bigWig (minus strand signal of unique reads) 67.3 MB
ENCFF301QZF.tsv tsv (transcript quantifications) 25.3 MB
ENCFF315DMN.bigWig bigWig (plus strand signal of all reads) 85.0 MB
ENCFF324SCN.fastq fastq (reads) 2.1 GB
ENCFF330EBW.bigWig bigWig (plus strand signal of all reads) 73.1 MB
ENCFF336QDU.bam bam (transcriptome alignments) 5.3 GB
ENCFF338FLY.fastq fastq (reads) 2.0 GB
ENCFF346NPV.bigWig bigWig (minus strand signal of all reads) 71.8 MB
ENCFF351MOB.bigWig bigWig (plus strand signal of all reads) 85.2 MB
ENCFF356ZYH.bigWig bigWig (plus strand signal of unique reads) 75.8 MB
ENCFF368FCS.bigWig bigWig (minus strand signal of all reads) 75.4 MB
ENCFF375PCL.bam bam (transcriptome alignments) 4.3 GB
ENCFF404KTE.bam bam (alignments) 3.9 GB
ENCFF410CWH.tsv tsv (transcript quantifications) 25.3 MB
ENCFF417SGB.bam bam (alignments) 3.2 GB
ENCFF429LSI.tar tar (differential splicing quantifications) 4.0 MB
ENCFF429RMC.bigWig bigWig (plus strand signal of all reads) 85.2 MB
ENCFF431YGO.bigWig bigWig (plus strand signal of all reads) 76.2 MB
ENCFF443OTS.bigWig bigWig (minus strand signal of unique reads) 73.9 MB
ENCFF445EGT.tsv tsv (gene quantifications) 9.4 MB
ENCFF445JJS.bam bam (transcriptome alignments) 4.3 GB
ENCFF458CWM.tsv tsv (gene quantifications) 9.1 MB
ENCFF465PAZ.bigWig bigWig (minus strand signal of unique reads) 70.1 MB
ENCFF469FIO.bigWig bigWig (plus strand signal of unique reads) 68.1 MB
ENCFF470IDN.bigWig bigWig (plus strand signal of all reads) 77.9 MB
ENCFF489ENX.tsv tsv (differential expression quantifications) 4.2 MB
ENCFF509PYL.bigWig bigWig (plus strand signal of all reads) 78.3 MB
ENCFF515ZMS.bigWig bigWig (minus strand signal of unique reads) 73.9 MB
ENCFF537BTA.bigWig bigWig (plus strand signal of all reads) 76.6 MB
ENCFF572ROU.bigWig bigWig (minus strand signal of all reads) 76.8 MB
ENCFF605SWX.bam bam (alignments) 3.0 GB
ENCFF606SYA.bigWig bigWig (plus strand signal of all reads) 74.6 MB
ENCFF618THC.bigWig bigWig (minus strand signal of unique reads) 66.3 MB
ENCFF651ZPG.bigWig bigWig (minus strand signal of all reads) 75.8 MB
ENCFF656HAU.tsv tsv (transcript quantifications) 24.8 MB
ENCFF668EMD.bigWig bigWig (plus strand signal of unique reads) 71.8 MB
ENCFF677EHD.bigWig bigWig (plus strand signal of unique reads) 70.9 MB
ENCFF683YKA.bigWig bigWig (plus strand signal of unique reads) 75.7 MB
ENCFF718DFM.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF718XJQ.tsv tsv (gene quantifications) 10.4 MB
ENCFF731YZU.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF742BYT.bigWig bigWig (minus strand signal of unique reads) 74.8 MB
ENCFF745XCM.bigWig bigWig (plus strand signal of unique reads) 69.0 MB
ENCFF746AQD.bigWig bigWig (plus strand signal of unique reads) 76.4 MB
ENCFF747WVE.bam bam (transcriptome alignments) 4.7 GB
ENCFF752LSL.bigWig bigWig (minus strand signal of unique reads) 74.2 MB
ENCFF772DMR.bigWig bigWig (minus strand signal of all reads) 82.9 MB
ENCFF778BJG.bam bam (alignments) 3.2 GB
ENCFF780VPE.bigWig bigWig (minus strand signal of all reads) 77.1 MB
ENCFF786UST.tsv tsv (differential expression quantifications) 5.5 MB
ENCFF797TOK.bigWig bigWig (minus strand signal of all reads) 73.4 MB
ENCFF803LVA.bigWig bigWig (plus strand signal of unique reads) 72.6 MB
ENCFF806IRK.bigWig bigWig (minus strand signal of unique reads) 69.5 MB
ENCFF817PKA.bigWig bigWig (minus strand signal of unique reads) 70.1 MB
ENCFF830WHK.tsv tsv (transcript quantifications) 27.3 MB
ENCFF835MQM.bigWig bigWig (plus strand signal of unique reads) 71.4 MB
ENCFF849XAH.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF863PVC.bigWig bigWig (minus strand signal of all reads) 82.5 MB
ENCFF869ZZY.bigWig bigWig (plus strand signal of unique reads) 75.4 MB
ENCFF871KUU.bam bam (alignments) 3.6 GB
ENCFF891LAW.tar tar (differential splicing quantifications) 3.4 MB
ENCFF892JVK.bigWig bigWig (minus strand signal of all reads) 84.2 MB
ENCFF899WWU.tsv tsv (transcript quantifications) 24.9 MB
ENCFF928OCW.tsv tsv (gene quantifications) 9.1 MB
ENCFF939XYU.bigWig bigWig (plus strand signal of unique reads) 74.9 MB
ENCFF955LES.bam bam (alignments) 3.0 GB
ENCFF965RPX.bam bam (alignments) 3.8 GB
ENCFF966FZW.fastq fastq (reads) 1.9 GB
ENCFF980VHS.bam bam (transcriptome alignments) 4.6 GB
ENCFF982XCP.bigWig bigWig (plus strand signal of unique reads) 75.5 MB
ENCFF987RQP.bigWig bigWig (minus strand signal of all reads) 84.1 MB
ENCSR975KJI ENCSR · via encode_api

Control ChIP-seq on HepG2

Homo sapiens

14 data files
FileTypeSize
ENCFF044TGH.bam bam (unfiltered alignments) 1.6 GB
ENCFF056NRS.bam bam (unfiltered alignments) 1.3 GB
ENCFF213VOX.bam bam (alignments) 1.0 GB
ENCFF292SYX.fastq fastq (reads) 922.1 MB
ENCFF353LPD.bam bam (unfiltered alignments) 1.3 GB
ENCFF450GNQ.bam bam (alignments) 1006.3 MB
ENCFF523LSO.bam bam (unfiltered alignments) 1.6 GB
ENCFF536AHS.bam bam (alignments) 1.2 GB
ENCFF565EDH.bam bam (unfiltered alignments) 1.7 GB
ENCFF609QFO.bam bam (alignments) 1007.2 MB
ENCFF670ZTJ.bam bam (unfiltered alignments) 1.3 GB
ENCFF887XCD.fastq fastq (reads) 1.2 GB
ENCFF901YVZ.bam bam (alignments) 1.2 GB
ENCFF905ZTG.bam bam (alignments) 1.3 GB
ENCSR141EZP ENCSR · via encode_api

Control ChIP-seq on HepG2

Homo sapiens

14 data files
FileTypeSize
ENCFF021UBI.bam bam (alignments) 1.6 GB
ENCFF100MPD.bam bam (unfiltered alignments) 1.5 GB
ENCFF253OIL.bam bam (unfiltered alignments) 1.5 GB
ENCFF282ICF.fastq fastq (reads) 1.1 GB
ENCFF310PFX.fastq fastq (reads) 1.5 GB
ENCFF322OEH.bam bam (alignments) 1.6 GB
ENCFF363VZX.bam bam (alignments) 1.1 GB
ENCFF598EFH.bam bam (alignments) 1.6 GB
ENCFF662UCQ.bam bam (unfiltered alignments) 2.0 GB
ENCFF707WXP.bam bam (alignments) 1.1 GB
ENCFF762RHM.bam bam (unfiltered alignments) 1.5 GB
ENCFF806VPE.bam bam (unfiltered alignments) 2.1 GB
ENCFF809XWW.bam bam (alignments) 1.2 GB
ENCFF928IWM.bam bam (unfiltered alignments) 2.0 GB
ENCSR519KXM ENCSR · via encode_api

RNA-seq on HepG2 cells treated with an shRNA knockdown against SLBP. (SLBP-BGHLV23)

Homo sapiens

92 data files
FileTypeSize
ENCFF017GUZ.bigWig bigWig (plus strand signal of unique reads) 74.2 MB
ENCFF018UWO.bam bam (alignments) 4.3 GB
ENCFF020OXK.tsv tsv (gene quantifications) 9.5 MB
ENCFF032QPE.bigWig bigWig (plus strand signal of unique reads) 68.8 MB
ENCFF041RMC.bigWig bigWig (plus strand signal of unique reads) 70.4 MB
ENCFF042WIO.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF104VAF.bam bam (alignments) 4.5 GB
ENCFF108MZS.bigWig bigWig (plus strand signal of all reads) 87.1 MB
ENCFF113MTL.bigWig bigWig (minus strand signal of unique reads) 76.4 MB
ENCFF120XBZ.tsv tsv (transcript quantifications) 25.3 MB
ENCFF123CNA.bam bam (alignments) 4.5 GB
ENCFF139XCY.bigWig bigWig (minus strand signal of all reads) 77.5 MB
ENCFF141OBC.bigWig bigWig (plus strand signal of all reads) 87.1 MB
ENCFF141VQQ.bigWig bigWig (minus strand signal of all reads) 81.1 MB
ENCFF143KML.bigWig bigWig (minus strand signal of unique reads) 72.7 MB
ENCFF157VML.bam bam (alignments) 4.5 GB
ENCFF158RWR.tsv tsv (differential expression quantifications) 2.7 MB
ENCFF159VNG.bigWig bigWig (plus strand signal of unique reads) 74.7 MB
ENCFF181OPE.bigWig bigWig (plus strand signal of all reads) 76.1 MB
ENCFF191HLP.tsv tsv (transcript quantifications) 25.3 MB
ENCFF194RTZ.tsv tsv (differential expression quantifications) 4.4 MB
ENCFF205BJN.bigWig bigWig (minus strand signal of all reads) 74.8 MB
ENCFF241KMF.bigWig bigWig (plus strand signal of all reads) 85.5 MB
ENCFF242WVU.fastq fastq (reads) 3.0 GB
ENCFF246RBO.bam bam (alignments) 5.3 GB
ENCFF259IXW.tsv tsv (gene quantifications) 9.5 MB
ENCFF280CNC.bigWig bigWig (plus strand signal of all reads) 81.6 MB
ENCFF282OHJ.tsv tsv (gene quantifications) 9.1 MB
ENCFF293CMZ.tar tar (differential splicing quantifications) 17.2 MB
ENCFF294WKV.tsv tsv (transcript quantifications) 29.8 MB
ENCFF295DPH.bigWig bigWig (minus strand signal of all reads) 78.8 MB
ENCFF321KVY.bam bam (transcriptome alignments) 7.5 GB
ENCFF361OHH.tsv tsv (transcript quantifications) 24.9 MB
ENCFF431EFW.bigWig bigWig (plus strand signal of all reads) 73.7 MB
ENCFF434OHR.bam bam (alignments) 5.3 GB
ENCFF469SKW.bigWig bigWig (minus strand signal of all reads) 80.4 MB
ENCFF480OUU.bigWig bigWig (plus strand signal of all reads) 80.2 MB
ENCFF482OIM.bigWig bigWig (minus strand signal of all reads) 72.2 MB
ENCFF490GQD.tsv tsv (gene quantifications) 9.1 MB
ENCFF496BQE.tsv tsv (transcript quantifications) 29.8 MB
ENCFF502AIX.bigWig bigWig (minus strand signal of all reads) 74.6 MB
ENCFF519DNA.bigWig bigWig (minus strand signal of unique reads) 72.8 MB
ENCFF521LRD.bam bam (transcriptome alignments) 6.5 GB
ENCFF522IGX.bigWig bigWig (minus strand signal of unique reads) 68.9 MB
ENCFF536VIT.bigWig bigWig (plus strand signal of unique reads) 74.6 MB
ENCFF548ESA.tar tar (differential splicing quantifications) 3.4 MB
ENCFF549UAK.bigWig bigWig (minus strand signal of all reads) 84.3 MB
ENCFF562ZGW.tar tar (differential splicing quantifications) 4.4 MB
ENCFF563VSO.bam bam (transcriptome alignments) 7.2 GB
ENCFF563XDL.bigWig bigWig (plus strand signal of all reads) 78.8 MB
ENCFF569XVZ.bigWig bigWig (plus strand signal of unique reads) 74.7 MB
ENCFF571UCC.tsv tsv (transcript quantifications) 27.3 MB
ENCFF582YVM.bam bam (alignments) 4.7 GB
ENCFF588FAC.bigWig bigWig (minus strand signal of all reads) 72.9 MB
ENCFF619SAD.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF623YLK.tsv tsv (gene quantifications) 10.4 MB
ENCFF627TJZ.bam bam (transcriptome alignments) 6.5 GB
ENCFF627ZCM.tsv tsv (gene quantifications) 10.4 MB
ENCFF628MBB.bam bam (alignments) 4.3 GB
ENCFF630ASZ.fastq fastq (reads) 2.9 GB
ENCFF636XLW.bam bam (alignments) 5.0 GB
ENCFF649XYW.bigWig bigWig (minus strand signal of all reads) 85.7 MB
ENCFF651KHH.fastq fastq (reads) 2.8 GB
ENCFF678UIM.bigWig bigWig (plus strand signal of all reads) 82.5 MB
ENCFF687IRC.bam bam (transcriptome alignments) 6.7 GB
ENCFF710RNG.bam bam (alignments) 5.5 GB
ENCFF712VQN.bigWig bigWig (plus strand signal of unique reads) 70.7 MB
ENCFF725OSR.bam bam (alignments) 5.5 GB
ENCFF726GAY.bigWig bigWig (plus strand signal of unique reads) 72.2 MB
ENCFF727WEW.tsv tsv (differential expression quantifications) 5.5 MB
ENCFF731PKF.bigWig bigWig (plus strand signal of unique reads) 79.2 MB
ENCFF751FGS.bigWig bigWig (plus strand signal of unique reads) 78.6 MB
ENCFF795CTH.bigWig bigWig (minus strand signal of unique reads) 72.9 MB
ENCFF845SYP.bigWig bigWig (minus strand signal of unique reads) 72.3 MB
ENCFF869OVE.bigWig bigWig (minus strand signal of all reads) 81.1 MB
ENCFF903YTD.bigWig bigWig (minus strand signal of unique reads) 66.9 MB
ENCFF919USG.bigWig bigWig (minus strand signal of unique reads) 73.0 MB
ENCFF922YAH.bigWig bigWig (minus strand signal of unique reads) 68.8 MB
ENCFF931ITZ.bigWig bigWig (plus strand signal of unique reads) 74.8 MB
ENCFF932BVW.bigWig bigWig (minus strand signal of unique reads) 77.1 MB
ENCFF934RQK.bigWig bigWig (minus strand signal of unique reads) 70.1 MB
ENCFF936TGP.bigWig bigWig (minus strand signal of all reads) 85.7 MB
ENCFF938CTI.bigWig bigWig (minus strand signal of unique reads) 76.6 MB
ENCFF944KIJ.bam bam (transcriptome alignments) 6.7 GB
ENCFF948IRB.bigWig bigWig (plus strand signal of unique reads) 78.3 MB
ENCFF950UTQ.tsv tsv (transcript quantifications) 24.9 MB
ENCFF956LAK.bam bam (alignments) 5.2 GB
ENCFF969HDY.tsv tsv (transcript quantifications) 27.3 MB
ENCFF978VKP.fastq fastq (reads) 2.8 GB
ENCFF981LPP.bigWig bigWig (plus strand signal of all reads) 76.3 MB
ENCFF994OAV.bigWig bigWig (plus strand signal of all reads) 74.1 MB
ENCFF997KOA.bigWig bigWig (plus strand signal of all reads) 82.5 MB
ENCSR312SFA ENCSR · via encode_api

RNA-seq on HepG2 cells treated with an shRNA knockdown against DDX19B. (DDX19B_BGHLV31)

Homo sapiens

92 data files
FileTypeSize
ENCFF010TBC.bigWig bigWig (plus strand signal of all reads) 86.3 MB
ENCFF010WJE.bigWig bigWig (minus strand signal of all reads) 77.5 MB
ENCFF012XMG.tsv tsv (differential expression quantifications) 4.3 MB
ENCFF022FFS.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF022GNJ.bam bam (alignments) 3.0 GB
ENCFF029CEQ.bigWig bigWig (plus strand signal of unique reads) 78.8 MB
ENCFF054KQW.tsv tsv (transcript quantifications) 27.4 MB
ENCFF056ZLG.bigWig bigWig (minus strand signal of all reads) 85.0 MB
ENCFF073GBJ.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF117UAS.bam bam (alignments) 2.7 GB
ENCFF130CUK.bigWig bigWig (minus strand signal of unique reads) 72.3 MB
ENCFF138VDU.bam bam (transcriptome alignments) 4.1 GB
ENCFF146XUG.bigWig bigWig (plus strand signal of unique reads) 78.8 MB
ENCFF152JVZ.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF183ALV.tar tar (differential splicing quantifications) 4.1 MB
ENCFF184ZAP.bam bam (alignments) 3.5 GB
ENCFF194KWX.tsv tsv (transcript quantifications) 25.3 MB
ENCFF202AKK.bigWig bigWig (minus strand signal of all reads) 73.7 MB
ENCFF208TCI.bigWig bigWig (plus strand signal of unique reads) 72.2 MB
ENCFF223EDP.tsv tsv (gene quantifications) 10.4 MB
ENCFF228IQM.fastq fastq (reads) 1.8 GB
ENCFF232UBY.bigWig bigWig (minus strand signal of all reads) 85.6 MB
ENCFF241EOJ.bigWig bigWig (minus strand signal of unique reads) 76.4 MB
ENCFF254TFQ.bigWig bigWig (minus strand signal of unique reads) 69.9 MB
ENCFF290LNB.bigWig bigWig (minus strand signal of unique reads) 76.4 MB
ENCFF293OVL.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF307LMQ.tsv tsv (transcript quantifications) 24.9 MB
ENCFF308HUT.bigWig bigWig (plus strand signal of unique reads) 78.6 MB
ENCFF309VMM.tsv tsv (gene quantifications) 9.4 MB
ENCFF320PMI.tsv tsv (transcript quantifications) 27.4 MB
ENCFF342GIQ.bigWig bigWig (plus strand signal of unique reads) 75.2 MB
ENCFF346DUO.bigWig bigWig (minus strand signal of all reads) 77.4 MB
ENCFF348AEX.bam bam (transcriptome alignments) 4.2 GB
ENCFF371VGR.bam bam (alignments) 2.5 GB
ENCFF373YZU.bigWig bigWig (plus strand signal of all reads) 87.3 MB
ENCFF380SKI.bigWig bigWig (minus strand signal of unique reads) 76.3 MB
ENCFF384HVJ.bigWig bigWig (plus strand signal of all reads) 86.5 MB
ENCFF394PAY.bigWig bigWig (minus strand signal of all reads) 84.5 MB
ENCFF399HVL.bigWig bigWig (plus strand signal of all reads) 80.5 MB
ENCFF421EOC.bigWig bigWig (plus strand signal of all reads) 81.0 MB
ENCFF424JYZ.fastq fastq (reads) 1.9 GB
ENCFF427KUY.bigWig bigWig (plus strand signal of all reads) 87.3 MB
ENCFF430RBN.bam bam (alignments) 3.3 GB
ENCFF440XFU.bigWig bigWig (minus strand signal of all reads) 79.2 MB
ENCFF441YCC.tsv tsv (transcript quantifications) 29.8 MB
ENCFF446LQO.tar tar (differential splicing quantifications) 16.8 MB
ENCFF452FOY.bigWig bigWig (minus strand signal of all reads) 78.7 MB
ENCFF453MTH.bigWig bigWig (minus strand signal of all reads) 84.5 MB
ENCFF455NJX.tsv tsv (gene quantifications) 9.1 MB
ENCFF456NAM.bigWig bigWig (minus strand signal of unique reads) 75.9 MB
ENCFF463DAH.bam bam (alignments) 2.8 GB
ENCFF465HBB.bam bam (alignments) 2.7 GB
ENCFF505YKJ.tsv tsv (gene quantifications) 10.4 MB
ENCFF513ALD.bam bam (transcriptome alignments) 4.8 GB
ENCFF517LIN.bigWig bigWig (plus strand signal of all reads) 78.0 MB
ENCFF522NJO.bigWig bigWig (plus strand signal of unique reads) 75.1 MB
ENCFF524BDI.tsv tsv (transcript quantifications) 25.3 MB
ENCFF532JTC.bam bam (alignments) 2.5 GB
ENCFF533ANF.bigWig bigWig (plus strand signal of all reads) 79.1 MB
ENCFF551RPK.bigWig bigWig (plus strand signal of unique reads) 74.5 MB
ENCFF552ERW.bigWig bigWig (minus strand signal of unique reads) 68.9 MB
ENCFF557VGH.bigWig bigWig (plus strand signal of unique reads) 78.2 MB
ENCFF563HNQ.bigWig bigWig (minus strand signal of unique reads) 72.5 MB
ENCFF654KYC.bigWig bigWig (minus strand signal of all reads) 84.8 MB
ENCFF656QZR.tsv tsv (gene quantifications) 9.1 MB
ENCFF662DEH.bam bam (transcriptome alignments) 4.7 GB
ENCFF684GIG.tsv tsv (gene quantifications) 9.4 MB
ENCFF693KHW.bam bam (alignments) 3.2 GB
ENCFF699VTS.fastq fastq (reads) 1.8 GB
ENCFF724OXW.fastq fastq (reads) 2.0 GB
ENCFF728UFN.bigWig bigWig (minus strand signal of unique reads) 72.9 MB
ENCFF737FSA.bam bam (alignments) 3.5 GB
ENCFF744QOR.bigWig bigWig (plus strand signal of unique reads) 79.1 MB
ENCFF779QQA.bam bam (transcriptome alignments) 5.3 GB
ENCFF787OJV.tsv tsv (transcript quantifications) 29.8 MB
ENCFF821OKW.bigWig bigWig (plus strand signal of all reads) 75.5 MB
ENCFF825JCQ.tsv tsv (transcript quantifications) 24.9 MB
ENCFF843AOC.bigWig bigWig (plus strand signal of unique reads) 78.6 MB
ENCFF843HSL.bam bam (transcriptome alignments) 4.6 GB
ENCFF857YST.tar tar (differential splicing quantifications) 3.5 MB
ENCFF860ZFZ.bam bam (alignments) 2.5 GB
ENCFF867JIQ.bigWig bigWig (minus strand signal of all reads) 76.1 MB
ENCFF868ADE.bigWig bigWig (plus strand signal of unique reads) 71.3 MB
ENCFF874JFI.bigWig bigWig (plus strand signal of all reads) 79.0 MB
ENCFF889EFE.bigWig bigWig (minus strand signal of unique reads) 72.8 MB
ENCFF902LWZ.bigWig bigWig (minus strand signal of unique reads) 76.5 MB
ENCFF932WAL.bigWig bigWig (plus strand signal of all reads) 86.3 MB
ENCFF935NXS.bigWig bigWig (minus strand signal of all reads) 85.6 MB
ENCFF961MCD.bam bam (alignments) 3.2 GB
ENCFF980TLQ.bigWig bigWig (plus strand signal of all reads) 86.3 MB
ENCFF988VIX.bigWig bigWig (plus strand signal of unique reads) 74.3 MB
ENCFF994URY.bigWig bigWig (minus strand signal of unique reads) 76.8 MB
ENCSR993FMY ENCSR · via encode_api

eCLIP experiment on HepG2 against TROVE2

Homo sapiens

36 data files
FileTypeSize
ENCFF029CYV.bed bed (peaks) 1.6 MB
ENCFF049UNM.fastq fastq (reads) 594.8 MB
ENCFF124ZON.bed bed (peaks) 1.9 MB
ENCFF154QAS.bigBed bigBed (peaks) 3.1 MB
ENCFF236UCB.bigWig bigWig (plus strand signal of unique reads) 20.0 MB
ENCFF305FNR.bam bam (alignments) 317.7 MB
ENCFF357SOW.bed bed (peaks) 422.1 KB
ENCFF371SYJ.bigWig bigWig (plus strand signal of unique reads) 21.8 MB
ENCFF373HXL.bigWig bigWig (plus strand signal of unique reads) 22.0 MB
ENCFF401RUI.bed bed (peaks) 1.7 MB
ENCFF425LQP.bigBed bigBed (peaks) 384.8 KB
ENCFF476NYI.fastq fastq (reads) 628.3 MB
ENCFF480INU.bigBed bigBed (peaks) 843.3 KB
ENCFF485HPD.bigWig bigWig (minus strand signal of unique reads) 19.2 MB
ENCFF490VDU.bigWig bigWig (minus strand signal of unique reads) 19.3 MB
ENCFF515SVK.bed bed (peaks) 1.9 MB
ENCFF518RWV.bigBed bigBed (peaks) 1.9 MB
ENCFF527CKN.bam bam (alignments) 385.2 MB
ENCFF551QMO.bed bed (peaks) 506.1 KB
ENCFF580PEL.bam bam (alignments) 313.8 MB
ENCFF611SOO.bed bed (peaks) 4.2 KB
ENCFF649XQE.bigBed bigBed (peaks) 2.7 MB
ENCFF681SRL.fastq fastq (reads) 629.6 MB
ENCFF728DBN.bigBed bigBed (peaks) 437.5 KB
ENCFF735GLT.bigBed bigBed (peaks) 2.7 MB
ENCFF763EMA.bed bed (peaks) 149.0 KB
ENCFF769CBK.bigWig bigWig (plus strand signal of unique reads) 19.8 MB
ENCFF813HZT.bed bed (peaks) 173.7 KB
ENCFF857CKQ.fastq fastq (reads) 676.9 MB
ENCFF876ONV.bam bam (alignments) 390.4 MB
ENCFF877QKG.bed bed (peaks) 4.2 KB
ENCFF919QBR.bigBed bigBed (peaks) 1.6 MB
ENCFF943FKR.bigBed bigBed (peaks) 992.2 KB
ENCFF959CKO.bigWig bigWig (minus strand signal of unique reads) 21.5 MB
ENCFF992LYC.bigWig bigWig (minus strand signal of unique reads) 21.4 MB
ENCFF998DQS.bigBed bigBed (peaks) 3.1 MB
ENCSR766FAC ENCSR · via encode_api

eCLIP experiment on HepG2 against RPS3

Homo sapiens

29 data files
FileTypeSize
ENCFF048FYV.fastq fastq (reads) 627.1 MB
ENCFF055PDH.bam bam (alignments) 167.8 MB
ENCFF070BLX.bigWig bigWig (plus strand signal of unique reads) 7.1 MB
ENCFF150LAG.bigWig bigWig (minus strand signal of unique reads) 7.0 MB
ENCFF163XOB.bed bed (peaks) 797.5 KB
ENCFF167GCB.bigBed bigBed (peaks) 1.6 MB
ENCFF233HCD.bam bam (alignments) 151.5 MB
ENCFF251QTX.bed bed (peaks) 813.6 KB
ENCFF275HKC.bed bed (peaks) 778.4 KB
ENCFF293CYV.bigBed bigBed (peaks) 1.7 MB
ENCFF301IJW.bed bed (peaks) 135.2 KB
ENCFF310CSZ.bigWig bigWig (plus strand signal of unique reads) 7.3 MB
ENCFF368GUH.fastq fastq (reads) 497.7 MB
ENCFF435LHP.bigBed bigBed (peaks) 1.3 MB
ENCFF552YOF.bigWig bigWig (minus strand signal of unique reads) 7.1 MB
ENCFF562LNH.bed bed (peaks) 694.8 KB
ENCFF574FKW.fastq fastq (reads) 582.9 MB
ENCFF584APK.bigBed bigBed (peaks) 1.6 MB
ENCFF624UFQ.bigWig bigWig (minus strand signal of unique reads) 7.2 MB
ENCFF634IHJ.bam bam (alignments) 160.4 MB
ENCFF756GJP.bigWig bigWig (plus strand signal of unique reads) 7.3 MB
ENCFF766RBQ.bigWig bigWig (minus strand signal of unique reads) 6.9 MB
ENCFF843WBE.bed bed (peaks) 840.4 KB
ENCFF848LEJ.bigBed bigBed (peaks) 1.7 MB
ENCFF850KGS.fastq fastq (reads) 462.3 MB
ENCFF959SXJ.bam bam (alignments) 160.6 MB
ENCFF984MNA.bigWig bigWig (plus strand signal of unique reads) 7.1 MB
ENCFF985DTC.bed bed (peaks) 139.0 KB
ENCFF993QKG.bed bed (peaks) 653.2 KB
ENCSR834YLD ENCSR · via encode_api

eCLIP experiment on HepG2 against DROSHA

Homo sapiens

30 data files
FileTypeSize
ENCFF023OZW.bigBed bigBed (peaks) 6.3 MB
ENCFF101QTP.bigWig bigWig (minus strand signal of unique reads) 26.1 MB
ENCFF110FOW.fastq fastq (reads) 787.9 MB
ENCFF110MMH.bed bed (peaks) 3.4 MB
ENCFF127OES.bigWig bigWig (plus strand signal of unique reads) 27.4 MB
ENCFF146RNO.bed bed (peaks) 3.4 MB
ENCFF146VLV.bigWig bigWig (minus strand signal of unique reads) 36.4 MB
ENCFF166TWT.bigBed bigBed (peaks) 5.8 MB
ENCFF190HNU.bam bam (alignments) 742.7 MB
ENCFF322CWI.bigWig bigWig (plus strand signal of unique reads) 27.7 MB
ENCFF370VET.bigWig bigWig (minus strand signal of unique reads) 36.0 MB
ENCFF392REB.bigBed bigBed (peaks) 1.3 MB
ENCFF401NJF.bam bam (alignments) 567.8 MB
ENCFF413DZP.bam bam (alignments) 733.3 MB
ENCFF473PFJ.bigWig bigWig (plus strand signal of unique reads) 36.3 MB
ENCFF484RCY.fastq fastq (reads) 841.0 MB
ENCFF548JFY.bed bed (peaks) 3.1 MB
ENCFF602SWL.bigBed bigBed (peaks) 1.6 MB
ENCFF624RZR.bed bed (peaks) 50.6 KB
ENCFF655WIT.bigBed bigBed (peaks) 6.4 MB
ENCFF673CDP.fastq fastq (reads) 995.4 MB
ENCFF674RKD.bigWig bigWig (plus strand signal of unique reads) 37.2 MB
ENCFF685BHL.bed bed (peaks) 604.2 KB
ENCFF744PVS.fastq fastq (reads) 1.0 GB
ENCFF773TOS.bam bam (alignments) 578.3 MB
ENCFF779CTU.bigBed bigBed (peaks) 5.8 MB
ENCFF806NCH.bed bed (peaks) 761.7 KB
ENCFF854BHP.bed bed (peaks) 52.7 KB
ENCFF897UHS.bigWig bigWig (minus strand signal of unique reads) 26.8 MB
ENCFF967UUI.bed bed (peaks) 3.1 MB
ENCSR170PBM ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) pulldown experiment against HNRNPA0

13 data files
FileTypeSize
ENCFF114JMF.fastq fastq (reads) 367.5 MB
ENCFF156FZK.fastq fastq (reads) 353.5 MB
ENCFF210HCF.fastq fastq (reads) 509.0 MB
ENCFF243RRA.tsv tsv (library fraction) 265.2 KB
ENCFF314LDN.tsv tsv (enrichment) 688.0 KB
ENCFF372WVS.tsv tsv (enrichment) 10.0 KB
ENCFF373FBO.fastq fastq (reads) 433.4 MB
ENCFF541BLM.tsv tsv (enrichment) 168.0 KB
ENCFF626WPP.tsv tsv (enrichment) 41.0 KB
ENCFF836VGG.fastq fastq (reads) 297.0 MB
ENCFF872NAF.tsv tsv (library fraction) 64.1 KB
ENCFF975HUX.tsv tsv (library fraction) 1.1 MB
ENCFF992KEZ.tsv tsv (library fraction) 15.2 KB
ENCSR648BSC ENCSR · via encode_api

RNA-seq on HepG2 cells treated with an shRNA knockdown against PUF60. (PUF60-BGHLV23)

Homo sapiens

92 data files
FileTypeSize
ENCFF004VLF.bam bam (transcriptome alignments) 5.9 GB
ENCFF008QFF.bigWig bigWig (minus strand signal of unique reads) 80.6 MB
ENCFF009HLG.bigWig bigWig (minus strand signal of unique reads) 71.7 MB
ENCFF033OIJ.bigWig bigWig (plus strand signal of unique reads) 74.1 MB
ENCFF036OHN.bam bam (alignments) 5.3 GB
ENCFF042JHM.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF053SMP.bigWig bigWig (plus strand signal of unique reads) 76.7 MB
ENCFF056YMB.bam bam (alignments) 4.2 GB
ENCFF064JDU.bam bam (alignments) 5.0 GB
ENCFF065LYN.fastq fastq (reads) 2.6 GB
ENCFF083NFB.bam bam (alignments) 5.0 GB
ENCFF090VMV.bigWig bigWig (minus strand signal of unique reads) 74.3 MB
ENCFF095SPO.tsv tsv (transcript quantifications) 29.8 MB
ENCFF111QVW.bigWig bigWig (minus strand signal of all reads) 81.3 MB
ENCFF123NAM.tsv tsv (transcript quantifications) 24.9 MB
ENCFF127DIH.bigWig bigWig (minus strand signal of unique reads) 80.6 MB
ENCFF145SJT.bigWig bigWig (plus strand signal of all reads) 71.5 MB
ENCFF167MEC.bigWig bigWig (minus strand signal of all reads) 90.3 MB
ENCFF175QMF.bigWig bigWig (minus strand signal of all reads) 80.1 MB
ENCFF200TYB.bigWig bigWig (plus strand signal of all reads) 80.6 MB
ENCFF203GJW.bam bam (alignments) 4.4 GB
ENCFF204IHG.bigWig bigWig (plus strand signal of unique reads) 83.1 MB
ENCFF204PYY.bigWig bigWig (plus strand signal of all reads) 78.2 MB
ENCFF215KDM.bigWig bigWig (minus strand signal of unique reads) 72.2 MB
ENCFF216BCS.bam bam (transcriptome alignments) 5.8 GB
ENCFF232AEV.bigWig bigWig (minus strand signal of all reads) 76.1 MB
ENCFF240WRL.bigWig bigWig (plus strand signal of unique reads) 74.9 MB
ENCFF254CEX.bigWig bigWig (plus strand signal of unique reads) 67.0 MB
ENCFF255KNY.tsv tsv (transcript quantifications) 27.4 MB
ENCFF258OLR.tar tar (differential splicing quantifications) 17.2 MB
ENCFF263OZD.tsv tsv (transcript quantifications) 29.8 MB
ENCFF265VOT.bigWig bigWig (minus strand signal of all reads) 89.4 MB
ENCFF273ZFJ.tsv tsv (transcript quantifications) 27.2 MB
ENCFF280RXJ.bigWig bigWig (plus strand signal of unique reads) 75.9 MB
ENCFF317EYW.tar tar (differential splicing quantifications) 3.9 MB
ENCFF360XXB.bam bam (transcriptome alignments) 5.7 GB
ENCFF366ZXN.bigWig bigWig (minus strand signal of unique reads) 66.8 MB
ENCFF369XSP.bam bam (alignments) 5.0 GB
ENCFF385USL.bigWig bigWig (minus strand signal of all reads) 90.2 MB
ENCFF428KKL.bigWig bigWig (plus strand signal of all reads) 74.0 MB
ENCFF441GCW.bam bam (alignments) 4.5 GB
ENCFF450QLW.bam bam (alignments) 4.4 GB
ENCFF457WEF.tsv tsv (gene quantifications) 9.1 MB
ENCFF458GIW.bigWig bigWig (plus strand signal of unique reads) 69.0 MB
ENCFF476WLV.bigWig bigWig (minus strand signal of unique reads) 73.7 MB
ENCFF487XNX.bigWig bigWig (plus strand signal of unique reads) 83.2 MB
ENCFF515WKE.bam bam (alignments) 4.1 GB
ENCFF534UTE.bigWig bigWig (minus strand signal of unique reads) 80.7 MB
ENCFF535EQZ.bam bam (transcriptome alignments) 5.6 GB
ENCFF549BXT.bigWig bigWig (minus strand signal of all reads) 69.2 MB
ENCFF559OZJ.tar tar (differential splicing quantifications) 5.4 MB
ENCFF579ADZ.bigWig bigWig (plus strand signal of all reads) 83.4 MB
ENCFF584LUS.bam bam (alignments) 4.1 GB
ENCFF596ZDD.bigWig bigWig (minus strand signal of all reads) 71.1 MB
ENCFF627YEI.bigWig bigWig (minus strand signal of all reads) 80.6 MB
ENCFF633OQS.bigWig bigWig (plus strand signal of all reads) 92.2 MB
ENCFF637LUW.tsv tsv (transcript quantifications) 24.9 MB
ENCFF660FTE.bigWig bigWig (minus strand signal of all reads) 78.8 MB
ENCFF661TAB.bigWig bigWig (minus strand signal of unique reads) 64.6 MB
ENCFF664SNV.bigWig bigWig (minus strand signal of all reads) 81.3 MB
ENCFF676RMF.tsv tsv (differential expression quantifications) 3.0 MB
ENCFF681ZHT.bam bam (transcriptome alignments) 6.3 GB
ENCFF694SLX.bigWig bigWig (plus strand signal of all reads) 72.9 MB
ENCFF724CEJ.tsv tsv (transcript quantifications) 25.3 MB
ENCFF730DTU.tsv tsv (transcript quantifications) 25.3 MB
ENCFF739EGR.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF764EKZ.bam bam (transcriptome alignments) 6.5 GB
ENCFF766VNG.tsv tsv (gene quantifications) 9.4 MB
ENCFF790PVL.tsv tsv (gene quantifications) 10.4 MB
ENCFF803PHB.bigWig bigWig (minus strand signal of unique reads) 70.3 MB
ENCFF812AUL.tsv tsv (differential expression quantifications) 4.5 MB
ENCFF822WOV.bigWig bigWig (plus strand signal of all reads) 92.2 MB
ENCFF823ZVN.bigWig bigWig (plus strand signal of all reads) 82.4 MB
ENCFF828TTX.bigWig bigWig (plus strand signal of unique reads) 68.7 MB
ENCFF851LUD.bigWig bigWig (minus strand signal of all reads) 72.0 MB
ENCFF853JUU.bigWig bigWig (plus strand signal of unique reads) 83.1 MB
ENCFF854YXJ.tsv tsv (gene quantifications) 9.4 MB
ENCFF857LKA.bigWig bigWig (plus strand signal of all reads) 82.1 MB
ENCFF862CRG.bigWig bigWig (plus strand signal of all reads) 91.1 MB
ENCFF876AJW.fastq fastq (reads) 2.6 GB
ENCFF876MHP.fastq fastq (reads) 2.7 GB
ENCFF893CGJ.tsv tsv (differential expression quantifications) 2.0 MB
ENCFF898CGK.bigWig bigWig (plus strand signal of unique reads) 72.9 MB
ENCFF908JPI.bigWig bigWig (minus strand signal of unique reads) 72.5 MB
ENCFF932EPG.tsv tsv (gene quantifications) 10.4 MB
ENCFF935XSU.tsv tsv (gene quantifications) 9.1 MB
ENCFF937YLH.bam bam (alignments) 4.8 GB
ENCFF942GFU.bigWig bigWig (minus strand signal of unique reads) 66.4 MB
ENCFF943WGV.fastq fastq (reads) 2.5 GB
ENCFF985RTQ.bam bam (alignments) 5.3 GB
ENCFF994RLO.bigWig bigWig (plus strand signal of unique reads) 74.6 MB
ENCFF999NNM.bigWig bigWig (plus strand signal of all reads) 83.4 MB
ENCSR629RUG ENCSR · via encode_api

RNA-seq on HepG2 cells treated with an shRNA knockdown against NSUN2. (NSUN2_BGHLV35)

Homo sapiens

92 data files
FileTypeSize
ENCFF027JHO.bigWig bigWig (minus strand signal of unique reads) 50.2 MB
ENCFF035DIO.bigWig bigWig (minus strand signal of unique reads) 59.3 MB
ENCFF053NHG.bigWig bigWig (plus strand signal of all reads) 55.3 MB
ENCFF090SIO.tsv tsv (transcript quantifications) 29.9 MB
ENCFF092PEH.bigWig bigWig (minus strand signal of all reads) 51.0 MB
ENCFF099HTQ.tsv tsv (transcript quantifications) 29.9 MB
ENCFF113WUW.bigWig bigWig (minus strand signal of all reads) 64.7 MB
ENCFF133XZR.bigWig bigWig (minus strand signal of unique reads) 56.0 MB
ENCFF151XPE.bam bam (alignments) 4.6 GB
ENCFF152WKS.tsv tsv (gene quantifications) 9.5 MB
ENCFF190HOP.tsv tsv (transcript quantifications) 25.4 MB
ENCFF200TST.bigWig bigWig (minus strand signal of unique reads) 64.5 MB
ENCFF210KUB.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF222ZTL.bigWig bigWig (plus strand signal of unique reads) 61.0 MB
ENCFF233SST.bigWig bigWig (plus strand signal of unique reads) 66.4 MB
ENCFF245JIS.tsv tsv (transcript quantifications) 25.0 MB
ENCFF255SHL.bam bam (alignments) 5.7 GB
ENCFF262HNQ.bam bam (transcriptome alignments) 6.3 GB
ENCFF269BPD.bam bam (alignments) 4.7 GB
ENCFF269GWO.bam bam (alignments) 5.4 GB
ENCFF270MGB.tsv tsv (gene quantifications) 9.1 MB
ENCFF271EBQ.tsv tsv (gene quantifications) 9.5 MB
ENCFF281YVB.bigWig bigWig (plus strand signal of all reads) 52.2 MB
ENCFF284UOI.bigWig bigWig (plus strand signal of unique reads) 48.8 MB
ENCFF286RWW.tsv tsv (transcript quantifications) 27.2 MB
ENCFF290TSB.bigWig bigWig (minus strand signal of unique reads) 49.8 MB
ENCFF300EME.bigWig bigWig (plus strand signal of all reads) 74.0 MB
ENCFF313XXJ.bigWig bigWig (minus strand signal of all reads) 72.5 MB
ENCFF322GMR.bam bam (alignments) 5.0 GB
ENCFF325NVY.bigWig bigWig (minus strand signal of all reads) 61.1 MB
ENCFF334RYT.tsv tsv (differential expression quantifications) 4.3 MB
ENCFF343UPI.bigWig bigWig (minus strand signal of unique reads) 64.5 MB
ENCFF370CXD.bigWig bigWig (plus strand signal of unique reads) 51.2 MB
ENCFF380GVT.bam bam (alignments) 4.2 GB
ENCFF385NOX.bigWig bigWig (minus strand signal of all reads) 60.9 MB
ENCFF397DFX.bigWig bigWig (plus strand signal of all reads) 62.4 MB
ENCFF419RRI.tsv tsv (gene quantifications) 10.4 MB
ENCFF428JQU.bigWig bigWig (minus strand signal of all reads) 72.5 MB
ENCFF430ZXC.bigWig bigWig (minus strand signal of all reads) 53.5 MB
ENCFF435EKW.tsv tsv (transcript quantifications) 25.0 MB
ENCFF437CON.bam bam (alignments) 4.2 GB
ENCFF445DWX.bam bam (transcriptome alignments) 5.6 GB
ENCFF461FGK.tar tar (differential splicing quantifications) 13.4 MB
ENCFF473IEZ.tsv tsv (gene quantifications) 10.4 MB
ENCFF479OMX.fastq fastq (reads) 3.2 GB
ENCFF481ARE.bam bam (alignments) 5.7 GB
ENCFF510DOQ.fastq fastq (reads) 3.0 GB
ENCFF521UZB.bigWig bigWig (plus strand signal of all reads) 62.3 MB
ENCFF526AIU.bigWig bigWig (minus strand signal of unique reads) 64.3 MB
ENCFF533YYG.bigWig bigWig (plus strand signal of all reads) 64.6 MB
ENCFF536BNB.bigWig bigWig (plus strand signal of all reads) 62.3 MB
ENCFF538FBE.tar tar (differential splicing quantifications) 3.5 MB
ENCFF550XIC.bam bam (alignments) 5.1 GB
ENCFF553JVK.tsv tsv (transcript quantifications) 27.3 MB
ENCFF571ONW.bigWig bigWig (minus strand signal of unique reads) 54.5 MB
ENCFF576ZID.bigWig bigWig (minus strand signal of unique reads) 59.8 MB
ENCFF596TOY.tsv tsv (differential expression quantifications) 2.0 MB
ENCFF599JMC.fastq fastq (reads) 2.8 GB
ENCFF602TXO.bigWig bigWig (plus strand signal of unique reads) 56.1 MB
ENCFF606BNJ.bigWig bigWig (plus strand signal of unique reads) 66.3 MB
ENCFF615IHJ.bigWig bigWig (minus strand signal of unique reads) 54.4 MB
ENCFF626ISE.bigWig bigWig (minus strand signal of all reads) 61.0 MB
ENCFF627BTN.bam bam (transcriptome alignments) 6.3 GB
ENCFF629UHW.tsv tsv (gene quantifications) 9.1 MB
ENCFF633EQA.bigWig bigWig (minus strand signal of all reads) 63.3 MB
ENCFF656AMO.bigWig bigWig (plus strand signal of unique reads) 57.9 MB
ENCFF695VTW.fastq fastq (reads) 3.1 GB
ENCFF696EKM.tar tar (differential splicing quantifications) 2.8 MB
ENCFF702CPC.bigWig bigWig (minus strand signal of unique reads) 47.2 MB
ENCFF725XZN.bigWig bigWig (plus strand signal of unique reads) 56.1 MB
ENCFF749ZMP.bigWig bigWig (plus strand signal of unique reads) 61.6 MB
ENCFF757AAI.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF765DHF.tsv tsv (transcript quantifications) 25.4 MB
ENCFF765EUO.bam bam (transcriptome alignments) 6.3 GB
ENCFF771WDN.bam bam (transcriptome alignments) 5.6 GB
ENCFF783CPQ.bigWig bigWig (plus strand signal of all reads) 66.2 MB
ENCFF787YFV.bigWig bigWig (plus strand signal of unique reads) 51.7 MB
ENCFF807CNW.bam bam (alignments) 4.3 GB
ENCFF815WVE.bam bam (alignments) 4.6 GB
ENCFF824RML.bigWig bigWig (minus strand signal of unique reads) 54.5 MB
ENCFF865KTS.bigWig bigWig (minus strand signal of all reads) 54.1 MB
ENCFF883HKR.bigWig bigWig (plus strand signal of all reads) 73.1 MB
ENCFF893LUD.bigWig bigWig (minus strand signal of all reads) 71.8 MB
ENCFF898WQX.bam bam (transcriptome alignments) 7.1 GB
ENCFF903MHS.bigWig bigWig (plus strand signal of all reads) 74.0 MB
ENCFF926MDT.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF947QJE.bigWig bigWig (plus strand signal of all reads) 62.2 MB
ENCFF953XFU.bigWig bigWig (minus strand signal of all reads) 61.1 MB
ENCFF956MRA.bigWig bigWig (plus strand signal of unique reads) 66.5 MB
ENCFF962GUE.bigWig bigWig (plus strand signal of unique reads) 56.0 MB
ENCFF970ZGA.bigWig bigWig (plus strand signal of all reads) 54.6 MB
ENCFF972TLY.bam bam (alignments) 5.1 GB
ENCSR098NHI ENCSR · via encode_api

shRNA knockdown against RPS19_13 in K562 cells followed by RNA-seq. (RPS19_BGKLV19)

Homo sapiens

92 data files
FileTypeSize
ENCFF010RLI.tsv tsv (gene quantifications) 10.4 MB
ENCFF016KWX.fastq fastq (reads) 2.1 GB
ENCFF022OSX.bigWig bigWig (plus strand signal of all reads) 60.4 MB
ENCFF025WLS.tar tar (differential splicing quantifications) 4.3 MB
ENCFF037CUC.bam bam (alignments) 4.1 GB
ENCFF037JSE.fastq fastq (reads) 1.6 GB
ENCFF039LWE.tsv tsv (gene quantifications) 9.4 MB
ENCFF051WLG.bigWig bigWig (minus strand signal of all reads) 77.5 MB
ENCFF065ZDU.bigWig bigWig (plus strand signal of unique reads) 65.7 MB
ENCFF068PRI.tsv tsv (transcript quantifications) 25.3 MB
ENCFF068VRH.bigWig bigWig (plus strand signal of unique reads) 70.1 MB
ENCFF072AWD.bigWig bigWig (plus strand signal of unique reads) 61.1 MB
ENCFF076NJV.bam bam (alignments) 2.6 GB
ENCFF082HFU.bigWig bigWig (minus strand signal of unique reads) 56.6 MB
ENCFF096APZ.bigWig bigWig (plus strand signal of all reads) 62.6 MB
ENCFF098VNY.bam bam (alignments) 3.3 GB
ENCFF099GIO.bigWig bigWig (plus strand signal of unique reads) 66.8 MB
ENCFF100OKV.bigWig bigWig (plus strand signal of unique reads) 69.9 MB
ENCFF106YZO.bigWig bigWig (plus strand signal of unique reads) 58.1 MB
ENCFF111QUZ.bigWig bigWig (minus strand signal of unique reads) 54.8 MB
ENCFF120NCN.bigWig bigWig (plus strand signal of all reads) 70.5 MB
ENCFF132VDA.bam bam (alignments) 4.1 GB
ENCFF204HAG.tar tar (differential splicing quantifications) 3.7 MB
ENCFF235GCR.bigWig bigWig (plus strand signal of unique reads) 67.4 MB
ENCFF236IZX.tsv tsv (transcript quantifications) 27.3 MB
ENCFF237ETX.bigWig bigWig (plus strand signal of unique reads) 57.3 MB
ENCFF239JKJ.bigWig bigWig (plus strand signal of all reads) 78.8 MB
ENCFF249XCT.bigWig bigWig (minus strand signal of all reads) 67.3 MB
ENCFF252QNQ.bigWig bigWig (minus strand signal of unique reads) 63.8 MB
ENCFF255RKE.bam bam (alignments) 3.4 GB
ENCFF285OAE.bam bam (transcriptome alignments) 3.7 GB
ENCFF296EEA.bam bam (alignments) 3.3 GB
ENCFF345IOJ.tsv tsv (transcript quantifications) 24.8 MB
ENCFF349DBK.tsv tsv (transcript quantifications) 25.3 MB
ENCFF350QPW.bigWig bigWig (plus strand signal of all reads) 61.2 MB
ENCFF353GXU.bigWig bigWig (plus strand signal of all reads) 72.4 MB
ENCFF366BIU.bigWig bigWig (plus strand signal of unique reads) 61.6 MB
ENCFF388WQW.bam bam (alignments) 3.0 GB
ENCFF398JYA.bam bam (alignments) 3.9 GB
ENCFF412OIA.bam bam (alignments) 3.4 GB
ENCFF419SXU.tsv tsv (gene quantifications) 9.1 MB
ENCFF423JAO.bigWig bigWig (minus strand signal of unique reads) 59.6 MB
ENCFF429RDG.bigWig bigWig (plus strand signal of unique reads) 60.5 MB
ENCFF445EWL.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF454EEA.bam bam (alignments) 3.4 GB
ENCFF473KMS.bigWig bigWig (plus strand signal of all reads) 77.2 MB
ENCFF491TNU.bigWig bigWig (minus strand signal of all reads) 60.2 MB
ENCFF497WZU.bigWig bigWig (minus strand signal of unique reads) 59.1 MB
ENCFF513ORU.bigWig bigWig (minus strand signal of all reads) 71.0 MB
ENCFF519RKS.tsv tsv (gene quantifications) 9.4 MB
ENCFF520CPG.tsv tsv (differential expression quantifications) 5.5 MB
ENCFF526CXY.bam bam (alignments) 2.6 GB
ENCFF528HBD.bigWig bigWig (minus strand signal of all reads) 77.5 MB
ENCFF530VMV.bam bam (transcriptome alignments) 5.6 GB
ENCFF545NYY.bigWig bigWig (minus strand signal of all reads) 67.1 MB
ENCFF570HBK.bigWig bigWig (minus strand signal of all reads) 61.4 MB
ENCFF596BAD.bam bam (transcriptome alignments) 3.7 GB
ENCFF613VVF.tsv tsv (transcript quantifications) 24.9 MB
ENCFF619VKE.bigWig bigWig (minus strand signal of all reads) 76.0 MB
ENCFF635YSD.tsv tsv (transcript quantifications) 27.3 MB
ENCFF645HLY.tar tar (differential splicing quantifications) 14.5 MB
ENCFF658IHH.tsv tsv (transcript quantifications) 29.7 MB
ENCFF660RJV.bam bam (transcriptome alignments) 5.0 GB
ENCFF660ZAD.bigWig bigWig (minus strand signal of unique reads) 65.3 MB
ENCFF663IMI.bam bam (alignments) 2.8 GB
ENCFF680ACC.bigWig bigWig (minus strand signal of unique reads) 68.5 MB
ENCFF682SLQ.bigWig bigWig (plus strand signal of all reads) 70.3 MB
ENCFF685QBN.bigWig bigWig (minus strand signal of unique reads) 68.1 MB
ENCFF689IVV.bigWig bigWig (minus strand signal of all reads) 59.2 MB
ENCFF703ODB.bam bam (transcriptome alignments) 4.2 GB
ENCFF704QKX.fastq fastq (reads) 2.2 GB
ENCFF709IIR.bigWig bigWig (minus strand signal of unique reads) 60.2 MB
ENCFF711BDX.tsv tsv (differential expression quantifications) 4.3 MB
ENCFF716TBH.bigWig bigWig (plus strand signal of all reads) 68.1 MB
ENCFF735ZRG.bigWig bigWig (minus strand signal of unique reads) 68.5 MB
ENCFF753VPY.bigWig bigWig (minus strand signal of unique reads) 65.6 MB
ENCFF760WLL.fastq fastq (reads) 1.7 GB
ENCFF802HJC.bigWig bigWig (plus strand signal of all reads) 68.4 MB
ENCFF816IZP.bigWig bigWig (minus strand signal of all reads) 69.1 MB
ENCFF824COA.bam bam (transcriptome alignments) 5.0 GB
ENCFF824TMH.bigWig bigWig (plus strand signal of unique reads) 70.2 MB
ENCFF839IHO.bigWig bigWig (minus strand signal of all reads) 68.9 MB
ENCFF840ARN.tsv tsv (differential expression quantifications) 3.0 MB
ENCFF856TGX.tsv tsv (gene quantifications) 10.4 MB
ENCFF883QAQ.tsv tsv (gene quantifications) 9.1 MB
ENCFF892CUM.bigWig bigWig (minus strand signal of all reads) 67.3 MB
ENCFF895QHB.bigWig bigWig (minus strand signal of unique reads) 56.0 MB
ENCFF956RQZ.bigWig bigWig (plus strand signal of all reads) 68.4 MB
ENCFF961IHL.bigWig bigWig (plus strand signal of all reads) 78.8 MB
ENCFF975UAB.tsv tsv (transcript quantifications) 29.8 MB
ENCFF975VKO.bigWig bigWig (plus strand signal of unique reads) 56.5 MB
ENCFF987COJ.tsv tsv (differential expression quantifications) 1.9 MB
ENCSR599UDS ENCSR · via encode_api

RNA-seq on K562 cells treated with an shRNA knockdown against AARS. (AARS_BGKLV21)

Homo sapiens

92 data files
FileTypeSize
ENCFF006XHX.tsv tsv (gene quantifications) 9.5 MB
ENCFF017NJA.bigWig bigWig (minus strand signal of all reads) 66.8 MB
ENCFF044JDG.bam bam (alignments) 4.0 GB
ENCFF048YJO.bigWig bigWig (minus strand signal of unique reads) 55.1 MB
ENCFF054NIH.bam bam (transcriptome alignments) 5.2 GB
ENCFF056GPX.bigWig bigWig (plus strand signal of unique reads) 68.6 MB
ENCFF072KXS.tsv tsv (differential expression quantifications) 5.5 MB
ENCFF101VSA.bigWig bigWig (minus strand signal of all reads) 75.7 MB
ENCFF105TYS.tsv tsv (transcript quantifications) 27.2 MB
ENCFF133KGV.bigWig bigWig (plus strand signal of unique reads) 56.2 MB
ENCFF147WUE.bam bam (alignments) 2.8 GB
ENCFF169NCD.bigWig bigWig (minus strand signal of unique reads) 58.3 MB
ENCFF173VGN.bigWig bigWig (plus strand signal of unique reads) 64.5 MB
ENCFF177ZTW.bam bam (transcriptome alignments) 3.9 GB
ENCFF188RNC.fastq fastq (reads) 1.9 GB
ENCFF212NJI.bigWig bigWig (plus strand signal of unique reads) 59.8 MB
ENCFF235HIU.bigWig bigWig (minus strand signal of unique reads) 58.3 MB
ENCFF237KPT.bigWig bigWig (plus strand signal of all reads) 66.9 MB
ENCFF255OAC.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF257BFG.tsv tsv (gene quantifications) 9.1 MB
ENCFF258JHJ.tar tar (differential splicing quantifications) 3.7 MB
ENCFF263JMT.bam bam (alignments) 3.3 GB
ENCFF268HNU.bigWig bigWig (minus strand signal of all reads) 69.0 MB
ENCFF288HFU.bam bam (transcriptome alignments) 4.7 GB
ENCFF302EAA.bigWig bigWig (plus strand signal of all reads) 67.7 MB
ENCFF312ELR.bigWig bigWig (minus strand signal of unique reads) 54.9 MB
ENCFF327DGO.bigWig bigWig (minus strand signal of unique reads) 66.7 MB
ENCFF330NXO.bigWig bigWig (plus strand signal of unique reads) 69.1 MB
ENCFF333ZCD.fastq fastq (reads) 2.1 GB
ENCFF336ELU.bigWig bigWig (plus strand signal of all reads) 70.3 MB
ENCFF339DLT.fastq fastq (reads) 2.2 GB
ENCFF357CVJ.bam bam (transcriptome alignments) 3.9 GB
ENCFF359WDZ.bigWig bigWig (minus strand signal of unique reads) 67.4 MB
ENCFF374ZTA.tsv tsv (transcript quantifications) 25.3 MB
ENCFF379QUD.bigWig bigWig (minus strand signal of unique reads) 58.6 MB
ENCFF390XEZ.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF393OPL.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF394TWY.tsv tsv (transcript quantifications) 25.3 MB
ENCFF402CEY.bam bam (alignments) 2.8 GB
ENCFF409THR.bigWig bigWig (plus strand signal of unique reads) 59.8 MB
ENCFF416BXM.fastq fastq (reads) 1.7 GB
ENCFF432BGL.bigWig bigWig (minus strand signal of all reads) 59.6 MB
ENCFF439EPQ.bigWig bigWig (minus strand signal of unique reads) 67.4 MB
ENCFF447ZJC.bam bam (alignments) 3.9 GB
ENCFF484HRK.bigWig bigWig (minus strand signal of unique reads) 51.9 MB
ENCFF493XIY.bigWig bigWig (minus strand signal of all reads) 58.4 MB
ENCFF500AUN.bigWig bigWig (minus strand signal of unique reads) 63.3 MB
ENCFF509GEJ.bigWig bigWig (minus strand signal of all reads) 56.6 MB
ENCFF509HCQ.bam bam (alignments) 4.0 GB
ENCFF517TZP.tsv tsv (transcript quantifications) 27.2 MB
ENCFF534BJA.bam bam (alignments) 3.3 GB
ENCFF544AYF.bigWig bigWig (minus strand signal of all reads) 75.9 MB
ENCFF552RBH.bam bam (transcriptome alignments) 4.4 GB
ENCFF553KNF.bigWig bigWig (plus strand signal of unique reads) 69.2 MB
ENCFF576DUT.bigWig bigWig (plus strand signal of unique reads) 53.5 MB
ENCFF581HJI.bam bam (transcriptome alignments) 4.6 GB
ENCFF584BCB.bam bam (alignments) 3.3 GB
ENCFF617UMK.tsv tsv (transcript quantifications) 24.9 MB
ENCFF618ODN.bigWig bigWig (plus strand signal of all reads) 59.2 MB
ENCFF623VNJ.bigWig bigWig (plus strand signal of all reads) 67.6 MB
ENCFF639OQB.tsv tsv (transcript quantifications) 29.8 MB
ENCFF639OYZ.bigWig bigWig (plus strand signal of unique reads) 56.6 MB
ENCFF663IIB.bigWig bigWig (plus strand signal of all reads) 76.9 MB
ENCFF667YZK.bam bam (alignments) 3.3 GB
ENCFF673JLD.bigWig bigWig (minus strand signal of all reads) 66.8 MB
ENCFF742OEB.tsv tsv (transcript quantifications) 24.9 MB
ENCFF765IIT.bigWig bigWig (plus strand signal of all reads) 76.8 MB
ENCFF767AID.bigWig bigWig (plus strand signal of all reads) 77.0 MB
ENCFF783EQP.bigWig bigWig (minus strand signal of all reads) 75.9 MB
ENCFF787DPV.bigWig bigWig (plus strand signal of all reads) 67.8 MB
ENCFF796ITR.bam bam (alignments) 2.8 GB
ENCFF800LHC.bigWig bigWig (minus strand signal of all reads) 66.6 MB
ENCFF822ZUR.bigWig bigWig (plus strand signal of unique reads) 61.0 MB
ENCFF823BXF.tsv tsv (transcript quantifications) 29.8 MB
ENCFF832UDP.bigWig bigWig (minus strand signal of all reads) 65.2 MB
ENCFF852WBE.bigWig bigWig (minus strand signal of unique reads) 63.0 MB
ENCFF859NOS.bigWig bigWig (plus strand signal of unique reads) 65.0 MB
ENCFF866OCV.tsv tsv (differential expression quantifications) 4.1 MB
ENCFF870EVG.bigWig bigWig (plus strand signal of all reads) 60.8 MB
ENCFF883IZJ.bigWig bigWig (plus strand signal of all reads) 57.9 MB
ENCFF893IIY.bam bam (alignments) 3.3 GB
ENCFF898GWK.tsv tsv (gene quantifications) 10.4 MB
ENCFF903IDE.tar tar (differential splicing quantifications) 3.1 MB
ENCFF908YBL.tsv tsv (gene quantifications) 9.1 MB
ENCFF910OIV.bigWig bigWig (plus strand signal of all reads) 66.6 MB
ENCFF935KUC.bam bam (alignments) 3.3 GB
ENCFF942UPQ.tsv tsv (gene quantifications) 9.5 MB
ENCFF953XVV.tsv tsv (gene quantifications) 10.4 MB
ENCFF956UVF.bigWig bigWig (plus strand signal of unique reads) 60.2 MB
ENCFF960SCT.tar tar (differential splicing quantifications) 14.6 MB
ENCFF969QVV.bigWig bigWig (minus strand signal of unique reads) 59.1 MB
ENCFF976KRR.bigWig bigWig (minus strand signal of all reads) 65.9 MB
ENCSR121GQH ENCSR · via encode_api

eCLIP experiment on K562 against SERBP1

Homo sapiens

34 data files
FileTypeSize
ENCFF007VAP.fastq fastq (reads) 360.0 MB
ENCFF058ORL.bed bed (peaks) 32.0 KB
ENCFF065ZBY.bed bed (peaks) 33.3 KB
ENCFF072GRP.bigWig bigWig (plus strand signal of unique reads) 991.8 KB
ENCFF083SYX.bigWig bigWig (plus strand signal of unique reads) 650.9 KB
ENCFF272WVO.bigWig bigWig (minus strand signal of unique reads) 460.8 KB
ENCFF287EUA.bam bam (alignments) 9.4 MB
ENCFF295HRZ.bed bed (peaks) 4.3 KB
ENCFF404ACO.bigWig bigWig (plus strand signal of unique reads) 997.7 KB
ENCFF405QJO.bed bed (peaks) 58.7 KB
ENCFF412TCD.fastq fastq (reads) 538.9 MB
ENCFF418FMB.bigWig bigWig (minus strand signal of unique reads) 937.5 KB
ENCFF457VMC.bigBed bigBed (peaks) 168.8 KB
ENCFF478QGG.bigBed bigBed (peaks) 176.0 KB
ENCFF619XEH.bigWig bigWig (plus strand signal of unique reads) 632.6 KB
ENCFF626HNR.bed bed (peaks) 33.9 KB
ENCFF628QLB.fastq fastq (reads) 322.4 MB
ENCFF648ONJ.bed bed (peaks) 21.3 KB
ENCFF682VXY.bigBed bigBed (peaks) 176.4 KB
ENCFF685GGU.bigBed bigBed (peaks) 147.6 KB
ENCFF690PXO.fastq fastq (reads) 469.4 MB
ENCFF710IZS.bed bed (peaks) 34.4 KB
ENCFF727HMM.bed bed (peaks) 4.0 KB
ENCFF762OZT.bigBed bigBed (peaks) 233.3 KB
ENCFF787NKL.bed bed (peaks) 58.8 KB
ENCFF802OIB.bigBed bigBed (peaks) 230.2 KB
ENCFF884YGW.bigBed bigBed (peaks) 235.5 KB
ENCFF902UZA.bigBed bigBed (peaks) 167.9 KB
ENCFF905IAJ.bigWig bigWig (minus strand signal of unique reads) 487.2 KB
ENCFF918RID.bam bam (alignments) 17.0 MB
ENCFF943MCZ.bam bam (alignments) 16.0 MB
ENCFF951GRM.bam bam (alignments) 8.5 MB
ENCFF963DCK.bigWig bigWig (minus strand signal of unique reads) 909.0 KB
ENCFF979XAE.bed bed (peaks) 60.6 KB
ENCSR205VSQ ENCSR · via encode_api

shRNA knockdown against DDX28 in K562 cells followed by RNA-seq. (DDX28_BGKLV19)

Homo sapiens

92 data files
FileTypeSize
ENCFF014HVA.bigWig bigWig (minus strand signal of unique reads) 81.8 MB
ENCFF014OVL.bam bam (transcriptome alignments) 5.9 GB
ENCFF018HPH.bigWig bigWig (plus strand signal of unique reads) 76.2 MB
ENCFF031RFC.bigWig bigWig (minus strand signal of all reads) 84.5 MB
ENCFF032XWT.bigWig bigWig (minus strand signal of all reads) 93.7 MB
ENCFF036JKE.bam bam (alignments) 5.2 GB
ENCFF042HUX.bigWig bigWig (plus strand signal of unique reads) 85.4 MB
ENCFF066ILM.bigWig bigWig (plus strand signal of unique reads) 85.8 MB
ENCFF085KCG.bam bam (alignments) 5.2 GB
ENCFF108PCL.bigWig bigWig (minus strand signal of unique reads) 76.2 MB
ENCFF109TPU.bigWig bigWig (minus strand signal of unique reads) 79.2 MB
ENCFF117QYY.bam bam (alignments) 4.1 GB
ENCFF156GRH.tsv tsv (transcript quantifications) 27.4 MB
ENCFF162XWU.tsv tsv (gene quantifications) 9.5 MB
ENCFF176JGO.bigWig bigWig (minus strand signal of unique reads) 81.6 MB
ENCFF202OVB.bigWig bigWig (minus strand signal of all reads) 92.3 MB
ENCFF209QQO.tsv tsv (transcript quantifications) 24.9 MB
ENCFF213XCO.tsv tsv (gene quantifications) 9.1 MB
ENCFF219CTO.bigWig bigWig (plus strand signal of all reads) 94.8 MB
ENCFF225WWT.bigWig bigWig (plus strand signal of unique reads) 85.4 MB
ENCFF240XPZ.bigWig bigWig (plus strand signal of unique reads) 79.2 MB
ENCFF247USV.bam bam (transcriptome alignments) 5.7 GB
ENCFF250ZJN.bigWig bigWig (minus strand signal of unique reads) 83.5 MB
ENCFF260NNY.bigWig bigWig (plus strand signal of all reads) 84.2 MB
ENCFF271WZX.bigWig bigWig (plus strand signal of all reads) 93.4 MB
ENCFF277JTX.bigWig bigWig (minus strand signal of unique reads) 84.0 MB
ENCFF302KUL.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF303DYQ.bigWig bigWig (plus strand signal of all reads) 86.0 MB
ENCFF315HBP.tsv tsv (transcript quantifications) 25.3 MB
ENCFF338NPO.bam bam (alignments) 5.0 GB
ENCFF344RCC.bigWig bigWig (plus strand signal of all reads) 85.4 MB
ENCFF349PYN.bigWig bigWig (minus strand signal of all reads) 81.7 MB
ENCFF367XTR.bam bam (alignments) 5.0 GB
ENCFF368PXX.bam bam (alignments) 4.3 GB
ENCFF369DMQ.fastq fastq (reads) 2.8 GB
ENCFF369HOT.tsv tsv (transcript quantifications) 27.4 MB
ENCFF383XBH.tsv tsv (gene quantifications) 10.4 MB
ENCFF410PYK.bigWig bigWig (minus strand signal of unique reads) 74.1 MB
ENCFF415PBC.bigWig bigWig (plus strand signal of unique reads) 80.5 MB
ENCFF434WHX.bigWig bigWig (plus strand signal of all reads) 84.8 MB
ENCFF445JAM.bam bam (alignments) 5.0 GB
ENCFF466BUC.bam bam (alignments) 4.8 GB
ENCFF474LCK.fastq fastq (reads) 2.5 GB
ENCFF478QLU.bigWig bigWig (minus strand signal of all reads) 85.5 MB
ENCFF500EDC.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF500SWS.bam bam (transcriptome alignments) 5.7 GB
ENCFF524LSV.tsv tsv (transcript quantifications) 29.8 MB
ENCFF526PJX.tsv tsv (transcript quantifications) 24.9 MB
ENCFF529GBY.bigWig bigWig (minus strand signal of all reads) 94.6 MB
ENCFF564AZV.bam bam (alignments) 4.0 GB
ENCFF584HAA.bam bam (transcriptome alignments) 6.4 GB
ENCFF599HTI.tsv tsv (gene quantifications) 10.4 MB
ENCFF640IYH.bigWig bigWig (plus strand signal of unique reads) 83.6 MB
ENCFF664ESQ.bigWig bigWig (plus strand signal of all reads) 95.7 MB
ENCFF676LCX.tar tar (differential splicing quantifications) 4.1 MB
ENCFF687VTW.bigWig bigWig (plus strand signal of unique reads) 84.3 MB
ENCFF704SUV.bigWig bigWig (plus strand signal of all reads) 86.9 MB
ENCFF704VIU.bam bam (alignments) 4.0 GB
ENCFF717YFJ.bigWig bigWig (plus strand signal of all reads) 83.2 MB
ENCFF721YLO.tar tar (differential splicing quantifications) 15.1 MB
ENCFF726DJK.bigWig bigWig (plus strand signal of all reads) 94.8 MB
ENCFF747HLX.bigWig bigWig (minus strand signal of unique reads) 82.3 MB
ENCFF766LMU.bigWig bigWig (minus strand signal of unique reads) 83.4 MB
ENCFF777BAJ.bigWig bigWig (minus strand signal of unique reads) 77.6 MB
ENCFF783MJQ.bam bam (alignments) 4.2 GB
ENCFF786PES.bigWig bigWig (minus strand signal of unique reads) 78.8 MB
ENCFF789DNG.bigWig bigWig (minus strand signal of all reads) 94.5 MB
ENCFF791UTP.bigWig bigWig (minus strand signal of unique reads) 78.1 MB
ENCFF801NQB.bigWig bigWig (minus strand signal of all reads) 83.8 MB
ENCFF801NYS.bigWig bigWig (minus strand signal of all reads) 82.7 MB
ENCFF819SRW.bigWig bigWig (plus strand signal of unique reads) 80.0 MB
ENCFF828BNV.fastq fastq (reads) 2.6 GB
ENCFF830IGK.tsv tsv (gene quantifications) 9.5 MB
ENCFF830KUD.tsv tsv (transcript quantifications) 25.3 MB
ENCFF833ZLQ.tsv tsv (differential expression quantifications) 5.5 MB
ENCFF846WKX.bam bam (transcriptome alignments) 6.7 GB
ENCFF863BVR.bam bam (transcriptome alignments) 5.9 GB
ENCFF871NAW.tsv tsv (differential expression quantifications) 4.1 MB
ENCFF878JHY.bigWig bigWig (plus strand signal of unique reads) 78.3 MB
ENCFF887CXU.bam bam (alignments) 4.3 GB
ENCFF890KCS.bigWig bigWig (minus strand signal of all reads) 84.6 MB
ENCFF891UXE.tsv tsv (gene quantifications) 9.1 MB
ENCFF897GKM.bigWig bigWig (plus strand signal of all reads) 95.5 MB
ENCFF902ZAY.tsv tsv (transcript quantifications) 29.8 MB
ENCFF904IXP.tsv tsv (differential expression quantifications) 2.8 MB
ENCFF923HGO.tar tar (differential splicing quantifications) 3.6 MB
ENCFF951FJB.bigWig bigWig (plus strand signal of unique reads) 81.2 MB
ENCFF962BRP.fastq fastq (reads) 2.7 GB
ENCFF978IDM.bigWig bigWig (plus strand signal of all reads) 95.6 MB
ENCFF992XMA.bigWig bigWig (minus strand signal of all reads) 94.4 MB
ENCFF996MGN.bigWig bigWig (minus strand signal of all reads) 93.7 MB
ENCFF999JTC.bigWig bigWig (plus strand signal of unique reads) 83.4 MB
ENCSR558XNA ENCSR · via encode_api

RNA-seq on K562 cells treated with an shRNA knockdown against PUF60. (PUF60-BGKLV25)

Homo sapiens

92 data files
FileTypeSize
ENCFF007GLG.bigWig bigWig (minus strand signal of all reads) 94.1 MB
ENCFF014EPX.tsv tsv (transcript quantifications) 24.9 MB
ENCFF021EZP.bigWig bigWig (plus strand signal of all reads) 112.9 MB
ENCFF031QID.bigWig bigWig (plus strand signal of unique reads) 101.1 MB
ENCFF036VMV.bigWig bigWig (minus strand signal of all reads) 147.4 MB
ENCFF042EUA.bigWig bigWig (minus strand signal of all reads) 111.7 MB
ENCFF043HAP.bigWig bigWig (plus strand signal of unique reads) 150.0 MB
ENCFF048QUA.bigWig bigWig (minus strand signal of unique reads) 135.7 MB
ENCFF054DCA.bigWig bigWig (plus strand signal of all reads) 145.5 MB
ENCFF079GAY.bigWig bigWig (minus strand signal of all reads) 164.7 MB
ENCFF104LEV.bigWig bigWig (minus strand signal of unique reads) 147.2 MB
ENCFF104LGP.bigWig bigWig (minus strand signal of all reads) 167.0 MB
ENCFF106EBI.tsv tsv (gene quantifications) 9.1 MB
ENCFF109AFP.bam bam (alignments) 5.2 GB
ENCFF115CNE.tsv tsv (gene quantifications) 9.5 MB
ENCFF134GPY.bigWig bigWig (plus strand signal of unique reads) 101.3 MB
ENCFF134OKX.bigWig bigWig (plus strand signal of unique reads) 138.0 MB
ENCFF134UXD.tsv tsv (transcript quantifications) 25.4 MB
ENCFF136LJT.bigWig bigWig (minus strand signal of all reads) 167.0 MB
ENCFF142PDE.bigWig bigWig (plus strand signal of all reads) 146.5 MB
ENCFF146IGF.tsv tsv (differential expression quantifications) 4.6 MB
ENCFF171KHE.bam bam (alignments) 6.4 GB
ENCFF172NKC.bigWig bigWig (minus strand signal of unique reads) 86.6 MB
ENCFF195DNM.bigWig bigWig (plus strand signal of unique reads) 150.3 MB
ENCFF196SNU.bigWig bigWig (minus strand signal of all reads) 110.0 MB
ENCFF215CWV.bigWig bigWig (plus strand signal of all reads) 95.8 MB
ENCFF215ZAR.bigWig bigWig (plus strand signal of all reads) 100.7 MB
ENCFF222VRU.bam bam (transcriptome alignments) 16.1 GB
ENCFF226NRB.bigWig bigWig (plus strand signal of unique reads) 150.3 MB
ENCFF240JPJ.bigWig bigWig (plus strand signal of unique reads) 134.6 MB
ENCFF243YBM.bigWig bigWig (plus strand signal of unique reads) 101.3 MB
ENCFF254YZO.bigWig bigWig (minus strand signal of unique reads) 99.1 MB
ENCFF256WUY.bigWig bigWig (minus strand signal of unique reads) 99.1 MB
ENCFF276QEU.bigWig bigWig (plus strand signal of all reads) 166.8 MB
ENCFF357YJZ.bigWig bigWig (minus strand signal of all reads) 143.8 MB
ENCFF359LJY.bigWig bigWig (minus strand signal of unique reads) 98.7 MB
ENCFF363ZON.bam bam (alignments) 6.4 GB
ENCFF372UAY.bigWig bigWig (plus strand signal of all reads) 149.8 MB
ENCFF389CMC.bigWig bigWig (plus strand signal of all reads) 112.9 MB
ENCFF400RIY.fastq fastq (reads) 6.7 GB
ENCFF457QMW.tar tar (differential splicing quantifications) 8.7 MB
ENCFF461EMF.tsv tsv (gene quantifications) 10.4 MB
ENCFF499KDI.bam bam (transcriptome alignments) 7.1 GB
ENCFF508HCJ.bigWig bigWig (minus strand signal of unique reads) 135.3 MB
ENCFF508MDF.bam bam (alignments) 10.3 GB
ENCFF516QBW.tsv tsv (differential expression quantifications) 1.8 MB
ENCFF520FRY.tsv tsv (transcript quantifications) 27.6 MB
ENCFF555CUG.bam bam (alignments) 12.4 GB
ENCFF566CHY.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF583POO.bam bam (transcriptome alignments) 8.1 GB
ENCFF585SFV.bigWig bigWig (minus strand signal of all reads) 111.7 MB
ENCFF587FIU.tsv tsv (transcript quantifications) 25.3 MB
ENCFF588ZRG.tar tar (differential splicing quantifications) 18.4 MB
ENCFF609NFS.fastq fastq (reads) 3.4 GB
ENCFF627ZYO.bam bam (transcriptome alignments) 7.2 GB
ENCFF632IRO.bam bam (alignments) 12.7 GB
ENCFF638KIH.bigWig bigWig (minus strand signal of unique reads) 92.0 MB
ENCFF656MOA.bigWig bigWig (plus strand signal of all reads) 111.4 MB
ENCFF662UQT.tsv tsv (transcript quantifications) 27.5 MB
ENCFF677KCP.bigWig bigWig (plus strand signal of unique reads) 89.0 MB
ENCFF678MQD.bigWig bigWig (plus strand signal of unique reads) 93.2 MB
ENCFF678SSV.bigWig bigWig (minus strand signal of all reads) 98.2 MB
ENCFF682SFK.tsv tsv (gene quantifications) 10.4 MB
ENCFF684FBR.bigWig bigWig (plus strand signal of unique reads) 94.2 MB
ENCFF688IGV.bam bam (alignments) 5.3 GB
ENCFF695LXO.tsv tsv (transcript quantifications) 29.9 MB
ENCFF696QDB.bigWig bigWig (plus strand signal of all reads) 99.4 MB
ENCFF705BVC.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF713SIS.fastq fastq (reads) 6.7 GB
ENCFF740WQM.bam bam (alignments) 6.3 GB
ENCFF741ENV.bam bam (alignments) 10.3 GB
ENCFF748BRG.bigWig bigWig (minus strand signal of unique reads) 91.4 MB
ENCFF749NXM.bam bam (transcriptome alignments) 14.3 GB
ENCFF755CKW.tsv tsv (transcript quantifications) 24.9 MB
ENCFF766AHJ.bigWig bigWig (plus strand signal of unique reads) 139.0 MB
ENCFF768TNO.tsv tsv (gene quantifications) 9.5 MB
ENCFF779EXS.bam bam (alignments) 5.3 GB
ENCFF810UAL.tsv tsv (gene quantifications) 9.1 MB
ENCFF816VZR.bam bam (alignments) 10.4 GB
ENCFF820INJ.bigWig bigWig (minus strand signal of unique reads) 147.2 MB
ENCFF851QVF.bigWig bigWig (minus strand signal of all reads) 99.1 MB
ENCFF858ZLB.tsv tsv (differential expression quantifications) 2.0 MB
ENCFF863YNU.tsv tsv (transcript quantifications) 29.8 MB
ENCFF868NLJ.bigWig bigWig (minus strand signal of unique reads) 146.7 MB
ENCFF870ULR.fastq fastq (reads) 3.3 GB
ENCFF872RJJ.bam bam (alignments) 12.7 GB
ENCFF880IPK.tar tar (differential splicing quantifications) 6.2 MB
ENCFF881AAZ.bam bam (transcriptome alignments) 14.2 GB
ENCFF904APZ.bigWig bigWig (minus strand signal of all reads) 143.9 MB
ENCFF919MXF.bigWig bigWig (plus strand signal of all reads) 168.8 MB
ENCFF943DXW.bigWig bigWig (plus strand signal of all reads) 168.9 MB
ENCFF943QAI.bigWig bigWig (minus strand signal of unique reads) 131.1 MB
ENCSR930BZL ENCSR · via encode_api

eCLIP experiment on K562 against DDX3X

Homo sapiens

36 data files
FileTypeSize
ENCFF017FYD.bigWig bigWig (minus strand signal of unique reads) 12.1 MB
ENCFF029BAQ.fastq fastq (reads) 378.2 MB
ENCFF039BKT.bed bed (peaks) 1.1 MB
ENCFF087MAJ.bed bed (peaks) 157.0 KB
ENCFF151JUK.fastq fastq (reads) 391.2 MB
ENCFF159TMA.bigWig bigWig (minus strand signal of unique reads) 8.8 MB
ENCFF188BJH.bam bam (alignments) 217.8 MB
ENCFF260CNL.bam bam (alignments) 198.9 MB
ENCFF272XGA.bed bed (peaks) 783.7 KB
ENCFF294VBN.bigWig bigWig (plus strand signal of unique reads) 12.5 MB
ENCFF343OME.bam bam (alignments) 191.3 MB
ENCFF346EYN.bigBed bigBed (peaks) 1.9 MB
ENCFF357NSP.fastq fastq (reads) 343.1 MB
ENCFF381YRZ.bed bed (peaks) 923.7 KB
ENCFF385QZV.bed bed (peaks) 770.4 KB
ENCFF432AKR.bigWig bigWig (plus strand signal of unique reads) 8.8 MB
ENCFF467TOC.bigWig bigWig (plus strand signal of unique reads) 9.1 MB
ENCFF483OBV.bed bed (peaks) 334.9 KB
ENCFF502YJV.bigWig bigWig (minus strand signal of unique reads) 12.3 MB
ENCFF565FNW.bigBed bigBed (peaks) 2.3 MB
ENCFF601TGO.bigBed bigBed (peaks) 2.3 MB
ENCFF667MXK.bed bed (peaks) 161.1 KB
ENCFF717JPQ.bigWig bigWig (plus strand signal of unique reads) 12.7 MB
ENCFF737NAW.bigBed bigBed (peaks) 2.8 MB
ENCFF737SOJ.bed bed (peaks) 929.4 KB
ENCFF762LWU.bigBed bigBed (peaks) 2.8 MB
ENCFF803EEU.bigBed bigBed (peaks) 1.9 MB
ENCFF818BXB.bigWig bigWig (minus strand signal of unique reads) 8.6 MB
ENCFF842AIM.bigBed bigBed (peaks) 1.6 MB
ENCFF854EXH.bigBed bigBed (peaks) 928.7 KB
ENCFF896YXV.bigBed bigBed (peaks) 1.6 MB
ENCFF901BYH.bed bed (peaks) 1.1 MB
ENCFF912NCS.bed bed (peaks) 397.8 KB
ENCFF943MML.fastq fastq (reads) 325.9 MB
ENCFF944DLO.bigBed bigBed (peaks) 814.9 KB
ENCFF969SMQ.bam bam (alignments) 212.0 MB
ENCSR006TPX ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) pulldown experiment against RBM22

15 data files
FileTypeSize
ENCFF106RWF.tsv tsv (enrichment) 168.0 KB
ENCFF179SVM.tsv tsv (enrichment) 10.0 KB
ENCFF222JFA.fastq fastq (reads) 499.2 MB
ENCFF293KBP.bed bed (peaks) 115.7 KB
ENCFF488JCO.tsv tsv (library fraction) 15.2 KB
ENCFF518QQN.fastq fastq (reads) 553.9 MB
ENCFF576DJF.fastq fastq (reads) 729.8 MB
ENCFF581IOZ.tsv tsv (enrichment) 688.1 KB
ENCFF686ABH.tsv tsv (library fraction) 63.9 KB
ENCFF688EDA.tsv tsv (enrichment) 41.0 KB
ENCFF708MRW.tsv tsv (library fraction) 265.8 KB
ENCFF745RRQ.fastq fastq (reads) 760.8 MB
ENCFF849UTP.tsv tsv (library fraction) 1.1 MB
ENCFF864NMG.bed bed (peaks) 63.7 KB
ENCFF870LSB.fastq fastq (reads) 622.2 MB
ENCSR398LZW ENCSR · via encode_api

shRNA knockdown against SND1 in HepG2 cells followed by RNA-seq. (SND1 BGHLV14)

Homo sapiens

92 data files
FileTypeSize
ENCFF003AYH.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF029JUT.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 67.6 MB
ENCFF031UGZ.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 74.6 MB
ENCFF036LMW.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 5.1 GB
ENCFF048JQD.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 68.6 MB
ENCFF048SDS.fastq fastq (reads) 2.2 GB
ENCFF050ZKM.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 63.3 MB
ENCFF066KLB.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 65.6 MB
ENCFF079FUR.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF081UUJ.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 76.9 MB
ENCFF103YDS.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 75.7 MB
ENCFF127OOZ.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 64.7 MB
ENCFF136GDL.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 68.1 MB
ENCFF141MKC.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 63.5 MB
ENCFF161JFV.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 76.3 MB
ENCFF166EIS.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 75.6 MB
ENCFF189TUQ.fastq fastq (reads) 2.2 GB
ENCFF211ODD.bam bam (alignments); assembly: GRCh38; genome annotation: V29 4.0 GB
ENCFF217VYI.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF220EPG.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 3.0 MB
ENCFF223HHS.fastq fastq (reads) 2.2 GB
ENCFF245LKF.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 5.6 GB
ENCFF263STH.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 75.1 MB
ENCFF264VXM.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 70.7 MB
ENCFF271IYK.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 67.4 MB
ENCFF283VKH.bam bam (alignments); assembly: hg19; genome annotation: V19 3.3 GB
ENCFF286KMG.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 67.0 MB
ENCFF292CMI.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF296BNM.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 68.1 MB
ENCFF312ADL.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF341XUV.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 68.9 MB
ENCFF344EJR.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 66.9 MB
ENCFF348EZU.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 75.1 MB
ENCFF355HDU.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 5.0 GB
ENCFF388PBI.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 5.7 GB
ENCFF396JZY.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 61.9 MB
ENCFF410DEW.fastq fastq (reads) 2.1 GB
ENCFF426BEA.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 5.1 GB
ENCFF427KUB.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 69.0 MB
ENCFF434SHD.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 4.2 MB
ENCFF441AZR.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF448JVL.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 69.0 MB
ENCFF455BXH.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 69.9 MB
ENCFF457DTL.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 66.7 MB
ENCFF467LVJ.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 69.5 MB
ENCFF478BKD.bam bam (alignments); assembly: GRCh38; genome annotation: V29 4.0 GB
ENCFF480RLF.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 68.2 MB
ENCFF488LQA.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 15.4 MB
ENCFF496HOT.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 67.5 MB
ENCFF561YDW.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 64.0 MB
ENCFF563GFB.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF578SNG.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 69.5 MB
ENCFF578VAI.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 66.1 MB
ENCFF599FPC.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF606ORC.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 66.8 MB
ENCFF607IVF.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 69.5 MB
ENCFF635JOU.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.7 MB
ENCFF636JEX.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 75.4 MB
ENCFF655CYP.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 5.5 MB
ENCFF658KTR.bam bam (alignments); assembly: hg19; genome annotation: V19 3.2 GB
ENCFF665MMJ.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.3 GB
ENCFF679JHC.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF698KIC.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 66.2 MB
ENCFF705OJW.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 61.6 MB
ENCFF722YWU.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.3 MB
ENCFF725MIC.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 69.0 MB
ENCFF758JDY.bam bam (alignments); assembly: hg19; genome annotation: V19 3.2 GB
ENCFF766GDH.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 76.3 MB
ENCFF791MHZ.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF800GKS.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.3 MB
ENCFF813JIZ.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.0 GB
ENCFF818NZV.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.0 MB
ENCFF829IHQ.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 67.9 MB
ENCFF836HEA.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 69.3 MB
ENCFF838LEA.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 75.7 MB
ENCFF842IDK.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.0 GB
ENCFF846ERO.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.3 GB
ENCFF870ART.bam bam (alignments); assembly: hg19; genome annotation: V19 3.8 GB
ENCFF877LLV.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 70.7 MB
ENCFF880MEJ.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF883GPM.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 67.9 MB
ENCFF920MXJ.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 64.8 MB
ENCFF921YOW.bam bam (alignments); assembly: hg19; genome annotation: V19 3.3 GB
ENCFF931OQK.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 3.6 MB
ENCFF938VRZ.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF952VTX.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 65.1 MB
ENCFF960NPK.bam bam (alignments); assembly: hg19; genome annotation: V19 3.9 GB
ENCFF961WIY.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 69.4 MB
ENCFF968PDT.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 76.9 MB
ENCFF978RWN.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 74.5 MB
ENCFF997EMI.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.9 MB
ENCFF999YXH.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 5.0 GB
ENCSR129RWD ENCSR · via encode_api

Control shRNA against no target in K562 cells followed by RNA-seq. (Nontarget-LV11)

Homo sapiens

84 data files
FileTypeSize
ENCFF016XOH.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 91.8 MB
ENCFF019GHG.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.4 MB
ENCFF019XTR.bam bam (alignments); assembly: hg19; genome annotation: V19 3.1 GB
ENCFF071GCX.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 97.2 MB
ENCFF072REC.bam bam (alignments); assembly: hg19; genome annotation: V19 4.2 GB
ENCFF080HUH.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 110.4 MB
ENCFF089HPB.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.5 MB
ENCFF100AMW.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 95.8 MB
ENCFF129UJN.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 82.3 MB
ENCFF138LSW.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 109.9 MB
ENCFF143CKD.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF170EPB.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF180IOW.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF202MFA.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 94.3 MB
ENCFF203JBC.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 98.5 MB
ENCFF217TGJ.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 89.0 MB
ENCFF221SEI.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 108.4 MB
ENCFF223LJT.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.5 MB
ENCFF233LHK.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 87.6 MB
ENCFF250NQT.bam bam (alignments); assembly: hg19; genome annotation: V19 4.0 GB
ENCFF263RHP.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 108.5 MB
ENCFF264WCX.bam bam (alignments); assembly: GRCh38; genome annotation: V29 4.4 GB
ENCFF277GPU.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 109.9 MB
ENCFF295OWP.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.4 MB
ENCFF297ZOE.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 94.2 MB
ENCFF305ENF.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 89.8 MB
ENCFF306YTM.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 100.4 MB
ENCFF314GDO.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 87.4 MB
ENCFF330WHZ.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 96.7 MB
ENCFF334ZJS.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 85.7 MB
ENCFF338VEF.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF360MFC.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 95.2 MB
ENCFF362API.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF386QKE.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 85.0 MB
ENCFF390XCU.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 87.9 MB
ENCFF391TSH.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF393LVH.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 4.5 GB
ENCFF396YDD.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.2 GB
ENCFF405YAI.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 97.7 MB
ENCFF423RMB.bam bam (alignments); assembly: hg19; genome annotation: V19 3.1 GB
ENCFF442PAK.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 100.5 MB
ENCFF456LNW.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 91.7 MB
ENCFF464VII.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 99.9 MB
ENCFF471QGG.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 111.0 MB
ENCFF473DTC.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 107.0 MB
ENCFF487ZNA.bam bam (alignments); assembly: GRCh38; genome annotation: V29 4.2 GB
ENCFF504RAI.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 89.9 MB
ENCFF514KUX.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 4.6 GB
ENCFF515HRO.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.3 GB
ENCFF528JLZ.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 89.6 MB
ENCFF569YVH.fastq fastq (reads) 2.2 GB
ENCFF587DSG.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF627DII.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 97.7 MB
ENCFF637GBJ.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 87.8 MB
ENCFF639VUF.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 108.9 MB
ENCFF656JJZ.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 112.5 MB
ENCFF656MMS.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 93.9 MB
ENCFF661LZQ.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 4.5 GB
ENCFF667EXM.fastq fastq (reads) 2.3 GB
ENCFF675ARH.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 97.7 MB
ENCFF679NTT.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 5.4 GB
ENCFF707DLO.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 81.2 MB
ENCFF717QPG.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF722UMW.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 96.6 MB
ENCFF726LTF.fastq fastq (reads) 2.1 GB
ENCFF726OCF.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 92.9 MB
ENCFF763COX.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 111.0 MB
ENCFF774RTC.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF826HJX.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 4.6 GB
ENCFF848BXW.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 83.6 MB
ENCFF867NHV.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.4 GB
ENCFF875PEA.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF881HFP.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 112.5 MB
ENCFF883JTK.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 94.9 MB
ENCFF884PTA.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.2 GB
ENCFF891EGO.fastq fastq (reads) 2.2 GB
ENCFF911SUJ.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 97.8 MB
ENCFF927OUW.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 108.5 MB
ENCFF932PVV.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 95.0 MB
ENCFF944UVR.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 5.4 GB
ENCFF970PYT.bam bam (alignments); assembly: hg19; genome annotation: V19 3.2 GB
ENCFF991LXI.bam bam (alignments); assembly: hg19; genome annotation: V19 3.2 GB
ENCFF992OPV.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 96.4 MB
ENCFF995JOX.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 90.0 MB
ENCSR853ZJS ENCSR · via encode_api

shRNA knockdown against HNRNPK in HepG2 cells followed by RNA-seq. (HNRNPK-BGHLV12)

Homo sapiens

92 data files
FileTypeSize
ENCFF013KES.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 85.6 MB
ENCFF033EZX.bam bam (alignments); assembly: hg19; genome annotation: V19 5.1 GB
ENCFF044SIN.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 93.6 MB
ENCFF051GAY.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 86.6 MB
ENCFF058RTJ.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 85.1 MB
ENCFF086JVH.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 96.4 MB
ENCFF101AKY.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 83.6 MB
ENCFF106HXI.fastq fastq (reads) 3.4 GB
ENCFF106VQM.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 97.7 MB
ENCFF106VTK.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 16.7 MB
ENCFF133DJM.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 89.4 MB
ENCFF136ULR.bam bam (alignments); assembly: GRCh38; genome annotation: V24 5.2 GB
ENCFF146LKU.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 4.3 MB
ENCFF153UAN.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF161CXM.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF173SWM.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 86.3 MB
ENCFF178COI.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 93.6 MB
ENCFF196EYD.bam bam (alignments); assembly: hg19; genome annotation: V19 5.1 GB
ENCFF221ESE.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 79.4 MB
ENCFF233NWW.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 86.7 MB
ENCFF238QRM.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF264TUS.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 84.2 MB
ENCFF275BYS.bam bam (alignments); assembly: hg19; genome annotation: V19 4.9 GB
ENCFF277NUG.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 86.5 MB
ENCFF283BRF.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 81.2 MB
ENCFF310TTT.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 81.7 MB
ENCFF314UOI.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 8.9 GB
ENCFF319UOJ.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF328UMU.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 80.4 MB
ENCFF333TRR.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 97.6 MB
ENCFF346YIZ.bam bam (alignments); assembly: GRCh38; genome annotation: V29 6.3 GB
ENCFF365SGO.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF370SVT.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 94.7 MB
ENCFF382MHL.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 5.6 MB
ENCFF433BRP.bam bam (alignments); assembly: hg19; genome annotation: V19 5.8 GB
ENCFF443JRR.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 86.1 MB
ENCFF443RGN.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF462KWR.fastq fastq (reads) 3.3 GB
ENCFF473XRS.bam bam (alignments); assembly: GRCh38; genome annotation: V29 6.1 GB
ENCFF480BHX.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 78.6 MB
ENCFF491UTY.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 83.1 MB
ENCFF501ULP.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 82.6 MB
ENCFF502AMN.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 95.0 MB
ENCFF511UOE.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF536ZWN.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF575TXF.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 83.9 MB
ENCFF578AGC.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 3.5 MB
ENCFF589WIS.bam bam (alignments); assembly: hg19; genome annotation: V19 4.9 GB
ENCFF636EMK.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 7.9 GB
ENCFF645CRB.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 86.2 MB
ENCFF645SVP.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 76.7 MB
ENCFF647SJM.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 86.4 MB
ENCFF649DDK.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 9.1 GB
ENCFF652UUW.bam bam (alignments); assembly: GRCh38; genome annotation: V24 6.3 GB
ENCFF653UKC.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 88.6 MB
ENCFF655JZX.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 4.4 MB
ENCFF663DFX.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.4 MB
ENCFF665PPR.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 84.8 MB
ENCFF672SYC.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 86.1 MB
ENCFF691LTZ.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 7.9 GB
ENCFF727PTE.bam bam (alignments); assembly: GRCh38; genome annotation: V24 6.1 GB
ENCFF729DLO.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 81.5 MB
ENCFF733CVR.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 80.0 MB
ENCFF737QDD.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 84.2 MB
ENCFF743CYV.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF743EIT.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 87.3 MB
ENCFF745TUN.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 88.0 MB
ENCFF763GAE.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 3.0 MB
ENCFF763SDA.fastq fastq (reads) 3.4 GB
ENCFF779AYM.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.8 MB
ENCFF789ITD.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF791UMG.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 82.7 MB
ENCFF797XBU.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.9 MB
ENCFF823VTS.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 94.0 MB
ENCFF833QUC.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.4 MB
ENCFF847HYQ.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 94.9 MB
ENCFF848KDG.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 84.6 MB
ENCFF856VMY.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 87.9 MB
ENCFF897EGS.bam bam (alignments); assembly: GRCh38; genome annotation: V24 5.0 GB
ENCFF899ZBQ.bam bam (alignments); assembly: hg19; genome annotation: V19 6.0 GB
ENCFF925HKV.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 83.5 MB
ENCFF927RWO.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 88.0 MB
ENCFF935SBS.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 95.7 MB
ENCFF941BHP.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.5 MB
ENCFF949BSN.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 8.1 GB
ENCFF949CWD.fastq fastq (reads) 3.3 GB
ENCFF975SHD.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF976YEB.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 88.6 MB
ENCFF983XSR.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 8.1 GB
ENCFF984RQR.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 92.8 MB
ENCFF985MJX.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 82.3 MB
ENCFF992XZI.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 96.4 MB
ENCSR445LJH ENCSR · via encode_api

eCLIP control experiment on HepG2 against PPIG

Homo sapiens

8 data files
FileTypeSize
ENCFF112XIJ.bigWig bigWig (minus strand signal of unique reads) 28.3 MB
ENCFF228NIC.bam bam (alignments) 603.0 MB
ENCFF469MCT.fastq fastq (reads) 704.0 MB
ENCFF652DDU.bigWig bigWig (minus strand signal of unique reads) 27.6 MB
ENCFF774GNF.bam bam (alignments) 587.3 MB
ENCFF825NBG.fastq fastq (reads) 774.2 MB
ENCFF856LAP.bigWig bigWig (plus strand signal of unique reads) 29.0 MB
ENCFF954QHQ.bigWig bigWig (plus strand signal of unique reads) 28.3 MB
ENCSR298SAD ENCSR · via encode_api

eCLIP control experiment on HepG2 against DGCR8

Homo sapiens

8 data files
FileTypeSize
ENCFF209NTM.bam bam (alignments) 419.5 MB
ENCFF225SLP.fastq fastq (reads) 376.0 MB
ENCFF673PHP.bigWig bigWig (minus strand signal of unique reads) 18.9 MB
ENCFF842EEC.bigWig bigWig (plus strand signal of unique reads) 19.7 MB
ENCFF869IBS.fastq fastq (reads) 428.1 MB
ENCFF883DQC.bam bam (alignments) 428.0 MB
ENCFF985AMT.bigWig bigWig (plus strand signal of unique reads) 19.4 MB
ENCFF997DNX.bigWig bigWig (minus strand signal of unique reads) 19.3 MB
ENCSR064DXG ENCSR · via encode_api

shRNA knockdown against PTBP1 in HepG2 cells followed by RNA-seq. (PTBP1-BGHLV12)

Homo sapiens

92 data files
FileTypeSize
ENCFF003BXW.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.5 MB
ENCFF005WTR.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 72.7 MB
ENCFF014RQD.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 98.0 MB
ENCFF019ZBE.bam bam (alignments); assembly: hg19; genome annotation: V19 3.2 GB
ENCFF022QUQ.bam bam (alignments); assembly: hg19; genome annotation: V19 5.1 GB
ENCFF035CXU.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF039GZQ.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 7.7 GB
ENCFF041ZQE.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.2 MB
ENCFF044JDS.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 3.3 MB
ENCFF044UQQ.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.0 MB
ENCFF081GDG.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 4.1 MB
ENCFF084MUD.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 96.2 MB
ENCFF089PQW.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 79.7 MB
ENCFF089VRS.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 5.6 MB
ENCFF098FKT.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.8 MB
ENCFF125RUG.bam bam (alignments); assembly: GRCh38; genome annotation: V29 6.2 GB
ENCFF139AUJ.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF140JMY.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF145TKU.bam bam (alignments); assembly: hg19; genome annotation: V19 3.7 GB
ENCFF155FIK.bam bam (alignments); assembly: hg19; genome annotation: V19 5.1 GB
ENCFF192HMF.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.3 MB
ENCFF195XWA.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 78.3 MB
ENCFF204CNP.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 92.6 MB
ENCFF204GST.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 96.0 MB
ENCFF207MJK.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.9 MB
ENCFF207ZEG.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 88.6 MB
ENCFF211UDA.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.8 GB
ENCFF235RFS.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 93.4 MB
ENCFF246XSM.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.2 GB
ENCFF251MLR.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.8 MB
ENCFF267OIE.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 94.7 MB
ENCFF277MSH.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 94.3 MB
ENCFF296AWP.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 103.7 MB
ENCFF326JSI.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 105.0 MB
ENCFF329GBF.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 63.6 MB
ENCFF338PVO.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF354DYX.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 93.4 MB
ENCFF359DYS.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.7 MB
ENCFF364DPS.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 16.5 MB
ENCFF386JWH.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 66.3 MB
ENCFF390KOO.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF394KKK.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 88.1 MB
ENCFF398BJQ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 65.4 MB
ENCFF434LRA.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 5.2 GB
ENCFF443YZO.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 103.2 MB
ENCFF448JLC.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 71.2 MB
ENCFF451TIO.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 77.0 MB
ENCFF481INY.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 96.1 MB
ENCFF486ADH.fastq fastq (reads) 2.0 GB
ENCFF497YCS.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 67.8 MB
ENCFF511LWB.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 72.3 MB
ENCFF518UIR.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 105.6 MB
ENCFF527FPF.bam bam (alignments); assembly: hg19; genome annotation: V19 3.2 GB
ENCFF543WTI.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 91.1 MB
ENCFF546YNH.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 8.6 GB
ENCFF555EDL.fastq fastq (reads) 3.4 GB
ENCFF600AAY.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 85.6 MB
ENCFF601HBO.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 65.9 MB
ENCFF638IWS.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 72.3 MB
ENCFF645NZT.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 68.2 MB
ENCFF663OZT.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF667CQV.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 89.2 MB
ENCFF691LTL.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 103.6 MB
ENCFF707AEZ.bam bam (alignments); assembly: GRCh38; genome annotation: V29 3.8 GB
ENCFF709DTV.bam bam (alignments); assembly: GRCh38; genome annotation: V24 5.2 GB
ENCFF723SVB.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 70.4 MB
ENCFF740PQI.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 78.2 MB
ENCFF741KIN.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 70.0 MB
ENCFF766ENP.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 7.6 GB
ENCFF773RTF.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 78.2 MB
ENCFF776JVF.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 68.1 MB
ENCFF793USF.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 91.9 MB
ENCFF794VHJ.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 4.6 GB
ENCFF802ZMS.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF832CVZ.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 105.6 MB
ENCFF836WHJ.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 70.4 MB
ENCFF854OQK.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 69.7 MB
ENCFF854PFR.bam bam (alignments); assembly: GRCh38; genome annotation: V24 6.2 GB
ENCFF855TDM.bam bam (alignments); assembly: hg19; genome annotation: V19 6.0 GB
ENCFF879ENJ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 72.0 MB
ENCFF881RDD.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 95.8 MB
ENCFF886SWZ.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 79.7 MB
ENCFF887GOE.fastq fastq (reads) 2.0 GB
ENCFF903PZF.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 4.4 MB
ENCFF908UXW.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 95.8 MB
ENCFF910GEM.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 4.6 GB
ENCFF917GHN.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF917JYP.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 70.5 MB
ENCFF921IZK.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 93.1 MB
ENCFF978OGD.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.4 MB
ENCFF983TGB.fastq fastq (reads) 3.3 GB
ENCFF984XGQ.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 71.9 MB
ENCSR081IAO ENCSR · via encode_api

RNA-seq on HepG2 cells treated with an shRNA knockdown against CCAR1. (CCAR1_BGHLV20)

Homo sapiens

92 data files
FileTypeSize
ENCFF061ACX.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF061FOP.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 113.3 MB
ENCFF122RLU.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 88.4 MB
ENCFF131PVU.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 7.8 GB
ENCFF137TTO.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 93.9 MB
ENCFF154XLM.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 91.3 MB
ENCFF161UGN.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 112.1 MB
ENCFF169UXZ.bam bam (alignments); assembly: GRCh38; genome annotation: V24 7.3 GB
ENCFF185OKC.fastq fastq (reads) 3.7 GB
ENCFF193KQG.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 96.6 MB
ENCFF198DFL.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 113.3 MB
ENCFF211JML.fastq fastq (reads) 3.9 GB
ENCFF223TWR.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 8.0 GB
ENCFF260SZX.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 96.5 MB
ENCFF270QWJ.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 96.9 MB
ENCFF282EMI.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.5 MB
ENCFF293TBF.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 85.1 MB
ENCFF302PEA.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 98.5 MB
ENCFF320YEW.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF329ESD.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF330YBG.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 3.6 MB
ENCFF331ILS.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.5 MB
ENCFF331MUY.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 3.0 MB
ENCFF341VOT.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 100.1 MB
ENCFF362RDT.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 99.9 MB
ENCFF376SOX.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF396LJX.bam bam (alignments); assembly: hg19; genome annotation: V19 5.7 GB
ENCFF400OWQ.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF409TFG.bam bam (alignments); assembly: GRCh38; genome annotation: V29 7.1 GB
ENCFF414NOO.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 99.8 MB
ENCFF421SIJ.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 86.4 MB
ENCFF429NUD.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 93.0 MB
ENCFF433FYO.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 96.9 MB
ENCFF449PGH.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 8.8 GB
ENCFF460DQR.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 110.5 MB
ENCFF478KLQ.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 91.2 MB
ENCFF482LZV.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 88.3 MB
ENCFF485NVW.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 110.8 MB
ENCFF518KSC.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 7.8 GB
ENCFF533GAE.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 4.5 MB
ENCFF541DSW.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 8.0 GB
ENCFF542WTQ.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF552YIQ.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 89.1 MB
ENCFF563XGW.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 101.4 MB
ENCFF565HOR.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 94.6 MB
ENCFF603MKL.fastq fastq (reads) 3.8 GB
ENCFF603RFD.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 110.5 MB
ENCFF616SZW.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.5 MB
ENCFF619ZWW.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 9.0 GB
ENCFF628FXA.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 108.0 MB
ENCFF635KLH.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.7 MB
ENCFF635SDV.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF642WHU.fastq fastq (reads) 3.7 GB
ENCFF654XYV.bam bam (alignments); assembly: hg19; genome annotation: V19 5.7 GB
ENCFF677BUJ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 99.8 MB
ENCFF699UBW.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 94.0 MB
ENCFF742DLM.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 84.0 MB
ENCFF746LSF.bam bam (alignments); assembly: GRCh38; genome annotation: V24 7.1 GB
ENCFF750NYO.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 89.0 MB
ENCFF757WTF.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF758CIJ.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.5 MB
ENCFF761BXL.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 94.6 MB
ENCFF765IAU.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 95.4 MB
ENCFF767MOL.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 88.0 MB
ENCFF777JYI.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 96.0 MB
ENCFF781ZDK.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 97.2 MB
ENCFF790LNN.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 96.4 MB
ENCFF815IWS.bam bam (alignments); assembly: hg19; genome annotation: V19 5.9 GB
ENCFF815JNC.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 110.7 MB
ENCFF815YPH.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 92.4 MB
ENCFF817EIQ.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF827ITH.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 98.1 MB
ENCFF840HIV.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 107.9 MB
ENCFF850LPJ.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 107.9 MB
ENCFF852NEH.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 96.5 MB
ENCFF867FSM.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF867WSE.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 5.6 MB
ENCFF868KOZ.bam bam (alignments); assembly: GRCh38; genome annotation: V29 7.3 GB
ENCFF874ITW.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 100.3 MB
ENCFF874TAD.bam bam (alignments); assembly: hg19; genome annotation: V19 6.8 GB
ENCFF896SNX.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 4.4 MB
ENCFF897EXI.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 110.4 MB
ENCFF898ENN.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.0 MB
ENCFF900XSL.bam bam (alignments); assembly: hg19; genome annotation: V19 5.9 GB
ENCFF938TRS.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 109.8 MB
ENCFF942OUY.bam bam (alignments); assembly: GRCh38; genome annotation: V24 6.0 GB
ENCFF954ZON.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 91.5 MB
ENCFF963WSB.bam bam (alignments); assembly: GRCh38; genome annotation: V24 5.9 GB
ENCFF964BMT.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 86.8 MB
ENCFF972JBH.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 18.0 MB
ENCFF981UXB.bam bam (alignments); assembly: hg19; genome annotation: V19 7.0 GB
ENCFF991JKJ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 92.0 MB
ENCSR355OQC ENCSR · via encode_api

RNA-seq on HepG2 cells treated with an shRNA knockdown against NAA15. (NAA15_BGHLV30)

Homo sapiens

92 data files
FileTypeSize
ENCFF008OAC.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 70.1 MB
ENCFF009VBR.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 5.0 GB
ENCFF010CYB.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 69.7 MB
ENCFF014CMG.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 70.5 MB
ENCFF049TRY.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 65.3 MB
ENCFF058QYI.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 6.8 GB
ENCFF058SSS.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 67.9 MB
ENCFF085DNF.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF108YHF.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 72.9 MB
ENCFF114RHZ.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 70.8 MB
ENCFF117SJN.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.3 MB
ENCFF122OZQ.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 4.2 MB
ENCFF123MDC.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF126BCD.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 76.8 MB
ENCFF139NPY.fastq fastq (reads) 2.2 GB
ENCFF139ZUD.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 70.5 MB
ENCFF140LSH.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 3.5 MB
ENCFF145POL.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 80.3 MB
ENCFF148IZQ.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.4 GB
ENCFF162EXO.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 63.9 MB
ENCFF172DLN.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 69.3 MB
ENCFF176OUS.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 67.9 MB
ENCFF181FMH.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF182PZY.bam bam (alignments); assembly: hg19; genome annotation: V19 4.2 GB
ENCFF190FMJ.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.3 MB
ENCFF196QFA.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 77.3 MB
ENCFF196VVK.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 78.1 MB
ENCFF199BUV.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 70.0 MB
ENCFF199YRY.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 65.6 MB
ENCFF209YXR.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 5.9 GB
ENCFF227BYW.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.5 MB
ENCFF249XGC.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 70.9 MB
ENCFF277YXF.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 63.2 MB
ENCFF285OAK.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 69.8 MB
ENCFF295VBU.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 67.0 MB
ENCFF331BRW.bam bam (alignments); assembly: GRCh38; genome annotation: V29 4.4 GB
ENCFF332APE.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.8 GB
ENCFF346DVJ.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 71.5 MB
ENCFF349VUE.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 15.1 MB
ENCFF353TBY.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF355FNO.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.4 MB
ENCFF370PCV.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 66.3 MB
ENCFF370SKC.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 6.0 GB
ENCFF376RBG.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 78.9 MB
ENCFF390HZK.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 67.6 MB
ENCFF393BWX.bam bam (alignments); assembly: hg19; genome annotation: V19 3.5 GB
ENCFF399RGJ.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 67.6 MB
ENCFF400VJT.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 64.0 MB
ENCFF403DTR.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 73.5 MB
ENCFF412UNL.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 68.7 MB
ENCFF421ECC.bam bam (alignments); assembly: GRCh38; genome annotation: V29 3.8 GB
ENCFF423QQF.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 5.7 GB
ENCFF436OTQ.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.8 MB
ENCFF449OGA.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF451AIC.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 70.4 MB
ENCFF479PPT.bam bam (alignments); assembly: hg19; genome annotation: V19 3.1 GB
ENCFF490ZTO.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 72.7 MB
ENCFF500NFQ.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 78.1 MB
ENCFF509NOK.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 72.4 MB
ENCFF512TNJ.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 80.4 MB
ENCFF515TAC.bam bam (alignments); assembly: hg19; genome annotation: V19 3.1 GB
ENCFF528ABF.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 79.0 MB
ENCFF550COA.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 71.4 MB
ENCFF550QCV.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 25.0 MB
ENCFF556NMZ.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 72.7 MB
ENCFF562EVO.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.8 MB
ENCFF594GKW.bam bam (alignments); assembly: hg19; genome annotation: V19 3.7 GB
ENCFF598CJA.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.9 MB
ENCFF615UIM.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 70.4 MB
ENCFF635IVP.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 65.8 MB
ENCFF643NQB.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.1 GB
ENCFF676MIZ.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 5.0 GB
ENCFF708LLR.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 80.4 MB
ENCFF712XEV.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 68.6 MB
ENCFF716LAU.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 5.6 MB
ENCFF751OFV.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF780HNV.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 61.5 MB
ENCFF782NJD.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.5 MB
ENCFF795NGT.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.9 MB
ENCFF820TPK.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 68.9 MB
ENCFF824VKD.fastq fastq (reads) 2.6 GB
ENCFF880YEJ.bam bam (alignments); assembly: hg19; genome annotation: V19 3.5 GB
ENCFF890SNA.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 78.9 MB
ENCFF902APN.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 75.0 MB
ENCFF922UKU.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 76.2 MB
ENCFF927UAX.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 71.9 MB
ENCFF928IPZ.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.5 GB
ENCFF943RCH.fastq fastq (reads) 2.2 GB
ENCFF964IEU.fastq fastq (reads) 2.6 GB
ENCFF980PVL.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF993KZI.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 76.8 MB
ENCFF994DPX.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 2.9 MB
ENCSR628IDK ENCSR · via encode_api

eCLIP experiment on K562 against KHDRBS1

Homo sapiens

38 data files
FileTypeSize
ENCFF027UTH.bed bed (peaks); assembly: GRCh38 26.0 KB
ENCFF050ONU.bigBed bigBed (peaks); assembly: hg19 1.2 MB
ENCFF052ABQ.bed bed (peaks); assembly: hg19 3.7 MB
ENCFF090VQN.bed bed (peaks); assembly: hg19 493.0 KB
ENCFF104SYR.bigBed bigBed (peaks); assembly: GRCh38 566.9 KB
ENCFF124YKO.bed bed (peaks); assembly: hg19 26.5 KB
ENCFF134SUE.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 37.7 MB
ENCFF141IVW.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 40.4 MB
ENCFF154ZDF.bigBed bigBed (peaks); assembly: GRCh38 456.2 KB
ENCFF164NCN.bigBed bigBed (peaks); assembly: hg19 6.1 MB
ENCFF167NEJ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 41.5 MB
ENCFF214SWT.bed bed (peaks); assembly: GRCh38 3.7 MB
ENCFF228IEH.bigBed bigBed (peaks); assembly: hg19 1.9 MB
ENCFF289UZZ.fastq fastq (reads) 590.9 MB
ENCFF308KNI.bed bed (peaks); assembly: GRCh38 185.3 KB
ENCFF335DOX.bed bed (peaks); assembly: hg19 493.1 KB
ENCFF352QTY.bam bam (alignments); assembly: hg19 859.3 MB
ENCFF381KMI.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 41.1 MB
ENCFF388PCV.bigBed bigBed (peaks); assembly: GRCh38 6.5 MB
ENCFF390ANM.bed bed (peaks); assembly: hg19 3.4 MB
ENCFF406JXO.bed bed (peaks); assembly: GRCh38 208.9 KB
ENCFF412OIS.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 38.4 MB
ENCFF564WBK.bed bed (peaks); assembly: hg19 541.5 KB
ENCFF577PBB.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 38.6 MB
ENCFF603CPZ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 39.3 MB
ENCFF608WLW.bam bam (alignments); assembly: hg19 776.7 MB
ENCFF610VBL.bigBed bigBed (peaks); assembly: GRCh38 6.1 MB
ENCFF651RTO.fastq fastq (reads) 506.4 MB
ENCFF676NAG.fastq fastq (reads) 569.2 MB
ENCFF707HNB.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 40.8 MB
ENCFF733UTQ.bigBed bigBed (peaks); assembly: hg19 961.4 KB
ENCFF738QUP.bed bed (peaks); assembly: GRCh38 3.4 MB
ENCFF778POI.bam bam (alignments); assembly: GRCh38 842.3 MB
ENCFF787ROO.bam bam (alignments); assembly: GRCh38 759.8 MB
ENCFF854ZHW.bed bed (peaks); assembly: hg19 541.3 KB
ENCFF862UDL.bigBed bigBed (peaks); assembly: hg19 6.5 MB
ENCFF923QOM.bigBed bigBed (peaks); assembly: hg19 1.9 MB
ENCFF947CCD.fastq fastq (reads) 487.0 MB
ENCSR550DVK ENCSR · via encode_api

eCLIP experiment on HepG2 against HNRNPC

Homo sapiens

36 data files
FileTypeSize
ENCFF006KTQ.bigBed bigBed (peaks); assembly: GRCh38 11.2 MB
ENCFF035QUK.fastq fastq (reads) 629.1 MB
ENCFF040BGS.fastq fastq (reads) 886.2 MB
ENCFF065BIC.fastq fastq (reads) 646.7 MB
ENCFF103MEF.bed bed (peaks); assembly: hg19 926.6 KB
ENCFF105AKX.bed bed (peaks); assembly: hg19 67.4 KB
ENCFF162FHQ.bam bam (alignments); assembly: GRCh38 781.2 MB
ENCFF230QOU.bed bed (peaks); assembly: GRCh38 4.9 MB
ENCFF244ESX.bed bed (peaks); assembly: hg19 1.1 MB
ENCFF260KPQ.bigBed bigBed (peaks); assembly: hg19 8.6 MB
ENCFF264TJL.bed bed (peaks); assembly: GRCh38 450.6 KB
ENCFF344JSD.bigBed bigBed (peaks); assembly: GRCh38 8.6 MB
ENCFF361VEU.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 38.9 MB
ENCFF401SPQ.bed bed (peaks); assembly: hg19 6.4 MB
ENCFF406EWT.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 54.7 MB
ENCFF440ROZ.bed bed (peaks); assembly: GRCh38 70.1 KB
ENCFF470TOW.bigBed bigBed (peaks); assembly: hg19 3.4 MB
ENCFF524SLW.bigBed bigBed (peaks); assembly: GRCh38 911.5 KB
ENCFF534YQS.bed bed (peaks); assembly: GRCh38 6.5 MB
ENCFF576LCX.bigBed bigBed (peaks); assembly: hg19 11.0 MB
ENCFF584MZO.fastq fastq (reads) 807.5 MB
ENCFF630YNF.bam bam (alignments); assembly: GRCh38 1.1 GB
ENCFF652VTM.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 54.4 MB
ENCFF674FGK.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 39.9 MB
ENCFF705SJW.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 56.0 MB
ENCFF736ZQQ.bam bam (alignments); assembly: hg19 1.0 GB
ENCFF738FJS.bed bed (peaks); assembly: hg19 4.9 MB
ENCFF774JCA.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 56.3 MB
ENCFF857KDA.bigBed bigBed (peaks); assembly: hg19 2.0 MB
ENCFF869PNM.bam bam (alignments); assembly: hg19 785.9 MB
ENCFF887LOE.bigBed bigBed (peaks); assembly: GRCh38 748.8 KB
ENCFF891BFD.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 38.7 MB
ENCFF930WRN.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 39.7 MB
ENCFF950TEB.bigBed bigBed (peaks); assembly: hg19 4.1 MB
ENCFF962BZR.bigBed bigBed (peaks); assembly: hg19 1.7 MB
ENCFF991KAG.bed bed (peaks); assembly: GRCh38 352.5 KB
ENCSR244SIO ENCSR · via encode_api

RNA-seq on K562 cells treated with an shRNA knockdown against KRR1. (KRR1_BGKLV36)

Homo sapiens

92 data files
FileTypeSize
ENCFF004LOU.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 58.6 MB
ENCFF011EKU.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 59.2 MB
ENCFF011YTM.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 64.6 MB
ENCFF030YCE.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.0 MB
ENCFF036LAZ.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 4.4 MB
ENCFF066NVL.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF085FUV.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 74.3 MB
ENCFF100YIO.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.3 MB
ENCFF128TFQ.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 64.8 MB
ENCFF154IIE.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 62.0 MB
ENCFF155KUG.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.3 MB
ENCFF156YLB.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 3.7 GB
ENCFF162EKT.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 75.0 MB
ENCFF166HOA.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 68.7 MB
ENCFF179UWR.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 62.0 MB
ENCFF186TZW.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.5 MB
ENCFF188WFO.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 75.2 MB
ENCFF204MET.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 65.6 MB
ENCFF212DPS.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 69.4 MB
ENCFF231CFC.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 4.3 GB
ENCFF233WRQ.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 68.8 MB
ENCFF258WAK.bam bam (alignments); assembly: GRCh38; genome annotation: V24 2.6 GB
ENCFF263BNV.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 66.9 MB
ENCFF265DDR.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 3.5 MB
ENCFF279XKR.bam bam (alignments); assembly: GRCh38; genome annotation: V29 3.2 GB
ENCFF290AEO.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 65.2 MB
ENCFF291KDB.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 3.8 GB
ENCFF292HTQ.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 71.0 MB
ENCFF300LGD.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 64.7 MB
ENCFF311IEK.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 60.4 MB
ENCFF315BVB.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 65.1 MB
ENCFF322RVL.fastq fastq (reads) 2.6 GB
ENCFF325HPS.bam bam (alignments); assembly: hg19; genome annotation: V19 3.5 GB
ENCFF330IPU.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF335WQT.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF341KSQ.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 79.9 MB
ENCFF346JDA.fastq fastq (reads) 2.6 GB
ENCFF346UVT.fastq fastq (reads) 1.8 GB
ENCFF351JYM.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.5 GB
ENCFF363VTB.bam bam (alignments); assembly: hg19; genome annotation: V19 3.5 GB
ENCFF379RBK.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 80.0 MB
ENCFF381EYQ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 60.8 MB
ENCFF396NWL.bam bam (alignments); assembly: hg19; genome annotation: V19 2.6 GB
ENCFF400HHP.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 3.1 MB
ENCFF402NEI.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 69.7 MB
ENCFF404HCF.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.8 MB
ENCFF422YHM.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.2 GB
ENCFF423UOM.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 69.6 MB
ENCFF432GBO.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 74.3 MB
ENCFF438PTZ.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 61.6 MB
ENCFF471PNG.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.3 GB
ENCFF472YEF.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 64.0 MB
ENCFF476JIO.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 65.6 MB
ENCFF478YOR.bam bam (alignments); assembly: hg19; genome annotation: V19 3.2 GB
ENCFF489FEM.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.9 MB
ENCFF490XNB.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 65.6 MB
ENCFF523CNE.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 4.9 GB
ENCFF552LOX.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 79.9 MB
ENCFF556VYC.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 63.4 MB
ENCFF559HVF.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF569PSB.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 75.2 MB
ENCFF583UKB.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 67.8 MB
ENCFF608CNU.fastq fastq (reads) 1.9 GB
ENCFF618ZGY.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 67.8 MB
ENCFF634GWF.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 63.8 MB
ENCFF642TYH.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 63.4 MB
ENCFF643DIL.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 67.3 MB
ENCFF660GUJ.bam bam (alignments); assembly: hg19; genome annotation: V19 2.6 GB
ENCFF668MJV.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 55.5 MB
ENCFF677GMK.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.4 MB
ENCFF691MOL.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF705ITF.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.4 MB
ENCFF708BOL.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 12.8 MB
ENCFF710GSP.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 63.3 MB
ENCFF743MKY.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 81.1 MB
ENCFF760COF.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 57.1 MB
ENCFF785ENX.bam bam (alignments); assembly: GRCh38; genome annotation: V29 4.3 GB
ENCFF804GWW.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 4.9 GB
ENCFF822QTC.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 5.5 MB
ENCFF824QYT.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 62.9 MB
ENCFF828STF.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 66.5 MB
ENCFF861WSG.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 69.6 MB
ENCFF867NNC.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.9 MB
ENCFF868DHE.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 5.6 GB
ENCFF869YXX.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 78.8 MB
ENCFF889KLH.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.7 MB
ENCFF890VIO.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 59.2 MB
ENCFF899HAC.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 72.6 MB
ENCFF936PVY.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 25.0 MB
ENCFF948KIM.bam bam (alignments); assembly: hg19; genome annotation: V19 4.3 GB
ENCFF954JWB.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.5 MB
ENCFF982DNC.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 81.0 MB
ENCSR921KDS ENCSR · via encode_api

RNA-seq on K562 cells treated with an shRNA knockdown against RCC2. (RCC2_BGKLV21)

Homo sapiens

92 data files
FileTypeSize
ENCFF048AXC.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 57.4 MB
ENCFF101LFF.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 51.2 MB
ENCFF113HWX.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 49.2 MB
ENCFF114GFM.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 58.3 MB
ENCFF114IYN.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF116GDA.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.6 MB
ENCFF116ZJB.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 64.3 MB
ENCFF123KHW.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.2 MB
ENCFF125WXV.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 64.7 MB
ENCFF145TLM.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF157GSK.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 4.3 GB
ENCFF166WFY.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 4.2 MB
ENCFF173OWR.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 3.9 GB
ENCFF179VEL.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 57.5 MB
ENCFF181QIS.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 51.3 MB
ENCFF194GFB.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 56.9 MB
ENCFF201TRE.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 55.1 MB
ENCFF218RSG.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 56.6 MB
ENCFF218YIW.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 3.0 MB
ENCFF226KHH.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 56.9 MB
ENCFF230OOR.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF240DIX.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 50.6 MB
ENCFF241EPD.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF266NVL.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 65.1 MB
ENCFF274ETS.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 5.5 MB
ENCFF289GVU.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF296OEM.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 48.5 MB
ENCFF316DRD.bam bam (alignments); assembly: hg19; genome annotation: V19 3.2 GB
ENCFF334PYN.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 58.7 MB
ENCFF350ECV.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 56.4 MB
ENCFF354QUG.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.2 MB
ENCFF377AGN.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF383DKD.bam bam (alignments); assembly: GRCh38; genome annotation: V24 2.6 GB
ENCFF384QYR.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 58.0 MB
ENCFF394GDR.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 3.1 GB
ENCFF394WDE.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 47.4 MB
ENCFF406JGH.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF414LAK.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 52.6 MB
ENCFF421AMV.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 50.2 MB
ENCFF427ULR.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 3.1 GB
ENCFF439UEO.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 44.2 MB
ENCFF441MQQ.bam bam (alignments); assembly: hg19; genome annotation: V19 2.8 GB
ENCFF451CDP.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 51.2 MB
ENCFF451UBP.bam bam (alignments); assembly: hg19; genome annotation: V19 2.2 GB
ENCFF453KLN.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 46.8 MB
ENCFF463BJD.bam bam (alignments); assembly: GRCh38; genome annotation: V24 2.2 GB
ENCFF466CKO.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.3 GB
ENCFF481CXX.bam bam (alignments); assembly: hg19; genome annotation: V19 2.2 GB
ENCFF493CRF.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 58.6 MB
ENCFF506IAU.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 60.1 MB
ENCFF508WRA.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 49.7 MB
ENCFF508ZYN.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF538KBU.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 56.2 MB
ENCFF540EUF.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 3.5 GB
ENCFF541FZC.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 55.6 MB
ENCFF553RBA.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 56.4 MB
ENCFF589YEV.fastq fastq (reads) 1.7 GB
ENCFF593NZI.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.9 MB
ENCFF595QMT.fastq fastq (reads) 1.5 GB
ENCFF603PCA.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF612JAX.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 51.9 MB
ENCFF615AYD.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 65.4 MB
ENCFF624VPE.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF634JIN.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 53.9 MB
ENCFF634OTB.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF635ULU.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 54.3 MB
ENCFF648TVE.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 58.8 MB
ENCFF675JCQ.bam bam (alignments); assembly: GRCh38; genome annotation: V24 2.8 GB
ENCFF675LAX.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 65.4 MB
ENCFF676VTT.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 55.2 MB
ENCFF693HZQ.bam bam (alignments); assembly: GRCh38; genome annotation: V29 3.3 GB
ENCFF712JJA.bam bam (alignments); assembly: hg19; genome annotation: V19 2.6 GB
ENCFF722NQY.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF755PWF.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 64.7 MB
ENCFF781LVG.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 55.7 MB
ENCFF792GRH.fastq fastq (reads) 1.3 GB
ENCFF803LCV.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 50.9 MB
ENCFF825NYR.bam bam (alignments); assembly: GRCh38; genome annotation: V29 2.6 GB
ENCFF840WYN.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.9 MB
ENCFF863DXG.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 47.6 MB
ENCFF870LAT.fastq fastq (reads) 1.9 GB
ENCFF883BIL.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 13.7 MB
ENCFF885RMV.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 48.4 MB
ENCFF894TUZ.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 59.2 MB
ENCFF911BHJ.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 56.9 MB
ENCFF914XCI.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 51.0 MB
ENCFF916JYT.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 45.3 MB
ENCFF928SLV.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 3.9 GB
ENCFF956TCU.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 51.2 MB
ENCFF975LRN.bam bam (alignments); assembly: hg19; genome annotation: V19 2.8 GB
ENCFF976XXO.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 3.5 MB
ENCFF978IKZ.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 50.1 MB
ENCSR835RMN ENCSR · via encode_api

RNA-seq on K562 cells treated with an shRNA knockdown against GRSF1. (GRSF1_BGKLV29-B)

Homo sapiens

92 data files
FileTypeSize
ENCFF024FQI.bam bam (alignments); assembly: hg19; genome annotation: V19 7.1 GB
ENCFF031MXO.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 129.1 MB
ENCFF032SVF.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.5 MB
ENCFF036HLC.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 91.6 MB
ENCFF048XSE.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF069DZK.fastq fastq (reads) 5.1 GB
ENCFF084AYN.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 13.8 GB
ENCFF092CPO.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 131.7 MB
ENCFF130CQG.bam bam (alignments); assembly: GRCh38; genome annotation: V29 6.1 GB
ENCFF136CNM.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 114.5 MB
ENCFF137PGK.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 145.3 MB
ENCFF142HAT.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 114.1 MB
ENCFF144KBP.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF159GWF.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 6.5 MB
ENCFF180JHK.bam bam (alignments); assembly: hg19; genome annotation: V19 5.9 GB
ENCFF191FFA.fastq fastq (reads) 3.4 GB
ENCFF196DTG.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 94.2 MB
ENCFF207OVQ.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 128.6 MB
ENCFF226OCP.bam bam (alignments); assembly: hg19; genome annotation: V19 7.1 GB
ENCFF231BQW.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 8.0 GB
ENCFF235LJL.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 5.4 MB
ENCFF260QVI.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 102.0 MB
ENCFF272ADO.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 93.9 MB
ENCFF274KVV.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.5 MB
ENCFF284IRO.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF285UZF.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 103.7 MB
ENCFF297JKK.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 5.6 MB
ENCFF317BXL.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF326ZWD.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 93.6 MB
ENCFF328PHS.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.4 MB
ENCFF358BHE.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 96.0 MB
ENCFF373EKA.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 114.6 MB
ENCFF390MIX.bam bam (alignments); assembly: GRCh38; genome annotation: V24 9.1 GB
ENCFF410JZK.bam bam (alignments); assembly: GRCh38; genome annotation: V29 9.1 GB
ENCFF415SZH.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF432TVH.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 4.5 MB
ENCFF442JAI.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 117.6 MB
ENCFF454LOY.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.9 GB
ENCFF458PRM.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 131.2 MB
ENCFF464FWQ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 131.4 MB
ENCFF464NSZ.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 100.1 MB
ENCFF471EAG.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.0 MB
ENCFF480KGQ.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 115.7 MB
ENCFF489YLA.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 95.7 MB
ENCFF492PEO.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 128.7 MB
ENCFF501QMM.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 146.2 MB
ENCFF508KMH.bam bam (alignments); assembly: hg19; genome annotation: V19 4.8 GB
ENCFF547RDB.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 112.9 MB
ENCFF557JRB.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 105.3 MB
ENCFF557KDH.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 12.1 GB
ENCFF574GMT.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 128.9 MB
ENCFF581LVN.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 146.1 MB
ENCFF581QTH.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 129.8 MB
ENCFF583MSY.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 131.9 MB
ENCFF584KNM.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 99.9 MB
ENCFF595WSU.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.9 MB
ENCFF599SEF.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 9.2 GB
ENCFF602LRP.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 99.9 MB
ENCFF654TUU.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.6 MB
ENCFF657YXB.bam bam (alignments); assembly: hg19; genome annotation: V19 4.8 GB
ENCFF708WXE.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 120.6 MB
ENCFF720ODA.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 101.5 MB
ENCFF729PCC.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 102.1 MB
ENCFF737QUR.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 120.7 MB
ENCFF744WGZ.bam bam (alignments); assembly: GRCh38; genome annotation: V24 6.1 GB
ENCFF749YYJ.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 101.0 MB
ENCFF751FMP.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 147.7 MB
ENCFF753IUU.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.8 MB
ENCFF759GDJ.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF769RNI.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 133.7 MB
ENCFF779LOY.fastq fastq (reads) 5.1 GB
ENCFF788KVE.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 143.7 MB
ENCFF789RQP.bam bam (alignments); assembly: GRCh38; genome annotation: V24 7.2 GB
ENCFF798DLU.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 102.0 MB
ENCFF801ZHK.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 124.3 MB
ENCFF839EUO.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.9 MB
ENCFF840UCD.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.5 MB
ENCFF846QUW.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 7.9 GB
ENCFF856CQR.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 3.0 MB
ENCFF857LLC.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 121.5 MB
ENCFF870ZDF.bam bam (alignments); assembly: hg19; genome annotation: V19 8.8 GB
ENCFF887RDK.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 99.3 MB
ENCFF900ZXP.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 131.4 MB
ENCFF901UPI.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 130.5 MB
ENCFF903ZTL.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 147.7 MB
ENCFF906OVT.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 101.2 MB
ENCFF906WXO.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 115.8 MB
ENCFF939UGG.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF944MHT.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 123.0 MB
ENCFF957CXC.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 17.3 MB
ENCFF976LWZ.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 11.9 GB
ENCFF989BCC.fastq fastq (reads) 3.4 GB
ENCSR614VYQ ENCSR · via encode_api

eCLIP control experiment on HepG2 against HNRNPU

Homo sapiens

8 data files
FileTypeSize
ENCFF027WDY.bam bam (alignments); assembly: GRCh38 359.0 MB
ENCFF149QMI.fastq fastq (reads) 451.8 MB
ENCFF234DPO.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 18.3 MB
ENCFF424XSW.bam bam (alignments); assembly: hg19 354.6 MB
ENCFF474XPU.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 18.2 MB
ENCFF672MVL.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 18.6 MB
ENCFF855ECL.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 17.9 MB
ENCFF962DLT.fastq fastq (reads) 472.4 MB
ENCSR871RTL ENCSR · via encode_api

eCLIP control experiment on K562 against U2AF2

Homo sapiens

8 data files
FileTypeSize
ENCFF097VMD.bam bam (alignments); assembly: hg19 153.7 MB
ENCFF126CZT.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 9.4 MB
ENCFF227TON.bam bam (alignments); assembly: GRCh38 153.9 MB
ENCFF303MYY.fastq fastq (reads) 308.0 MB
ENCFF325JZX.fastq fastq (reads) 307.5 MB
ENCFF498CTW.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 6.9 MB
ENCFF780WFJ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 9.4 MB
ENCFF945AJC.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 6.9 MB
ENCSR927XBT ENCSR · via encode_api

RNA-seq on K562 cells treated with an shRNA knockdown against NUSAP1. (NUSAP1_BGKLV21)

Homo sapiens

120 data files
FileTypeSize
ENCFF027ULK.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 102.2 MB
ENCFF049BYT.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 62.9 MB
ENCFF071XRK.fastq fastq (reads) 1.8 GB
ENCFF074BDW.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 105.6 MB
ENCFF074IJW.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 53.7 MB
ENCFF075GYV.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 102.6 MB
ENCFF090ZFV.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 102.7 MB
ENCFF104BHT.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 57.7 MB
ENCFF105UZT.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.9 MB
ENCFF111PUR.fastq fastq (reads) 1.6 GB
ENCFF131MOI.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 62.9 MB
ENCFF139XOL.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 5.6 MB
ENCFF144LSX.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 101.4 MB
ENCFF146JAP.bam bam (alignments); assembly: hg19; genome annotation: V19 1.7 GB
ENCFF156FSY.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 7.4 GB
ENCFF164CZI.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.2 MB
ENCFF164FTJ.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 106.7 MB
ENCFF179HQU.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 39.3 MB
ENCFF183HVW.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 109.1 MB
ENCFF190ZDZ.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 4.0 MB
ENCFF204APB.bam bam (alignments); assembly: hg19; genome annotation: V19 2.4 GB
ENCFF208OZZ.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF221VSP.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 108.6 MB
ENCFF231RCC.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 57.5 MB
ENCFF256PPO.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 99.7 MB
ENCFF267SFM.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 40.4 MB
ENCFF278OYY.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 3.3 GB
ENCFF279RBO.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 90.4 MB
ENCFF295RJX.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 88.6 MB
ENCFF296LVT.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 53.9 MB
ENCFF305SIQ.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF325ASM.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 84.3 MB
ENCFF330GCJ.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 91.6 MB
ENCFF367DLN.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.4 MB
ENCFF386UKZ.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF403XMD.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF407VBF.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.4 GB
ENCFF407XIV.bam bam (alignments); assembly: GRCh38; genome annotation: V29 2.9 GB
ENCFF412EGL.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 58.2 MB
ENCFF412VNJ.bam bam (alignments); assembly: GRCh38; genome annotation: V24 5.1 GB
ENCFF419DTB.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 7.4 GB
ENCFF422YWK.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 84.7 MB
ENCFF428SAS.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 91.6 MB
ENCFF437BIF.bam bam (alignments); assembly: hg19; genome annotation: V19 5.2 GB
ENCFF438DEU.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 43.3 MB
ENCFF444MXO.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 3.4 MB
ENCFF448TMQ.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.5 MB
ENCFF453CWB.bam bam (alignments); assembly: GRCh38; genome annotation: V24 2.9 GB
ENCFF489TCD.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.4 MB
ENCFF493CTN.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 114.9 MB
ENCFF507FYC.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 99.1 MB
ENCFF510YHI.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 49.7 MB
ENCFF512MJC.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 119.7 MB
ENCFF514PQX.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 14.6 MB
ENCFF519SQN.bam bam (alignments); assembly: GRCh38; genome annotation: V29 5.4 GB
ENCFF536VHV.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF538YVD.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 57.0 MB
ENCFF543SWC.bam bam (alignments); assembly: GRCh38; genome annotation: V24 6.2 GB
ENCFF556XOF.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 107.9 MB
ENCFF561EQA.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 63.8 MB
ENCFF567PQG.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.5 MB
ENCFF578HKS.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF579UBA.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF580CGZ.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 52.6 MB
ENCFF586RJC.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 102.8 MB
ENCFF589NKD.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 55.5 MB
ENCFF591KID.bam bam (alignments); assembly: hg19; genome annotation: V19 2.9 GB
ENCFF601IQC.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF605GZC.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 4.2 MB
ENCFF616GRH.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 53.2 MB
ENCFF621ASW.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 42.5 MB
ENCFF621TWV.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF639RJS.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 93.4 MB
ENCFF643ZJK.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF646BXG.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 105.4 MB
ENCFF651SYW.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 101.4 MB
ENCFF668YFC.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 101.5 MB
ENCFF673ZBS.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 57.2 MB
ENCFF679ZTT.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 91.6 MB
ENCFF682KPH.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF682RMG.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 6.5 GB
ENCFF684NJR.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 6.5 GB
ENCFF685WMS.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 86.9 MB
ENCFF688AFU.fastq fastq (reads) 1.5 GB
ENCFF693ZJX.bam bam (alignments); assembly: hg19; genome annotation: V19 1.7 GB
ENCFF712IRZ.fastq fastq (reads) 1.9 GB
ENCFF718ESB.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 105.3 MB
ENCFF724WZZ.bam bam (alignments); assembly: hg19; genome annotation: V19 5.9 GB
ENCFF726HWA.bam bam (alignments); assembly: hg19; genome annotation: V19 4.3 GB
ENCFF728VLU.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 56.1 MB
ENCFF734QQZ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 51.1 MB
ENCFF737TRF.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 56.8 MB
ENCFF745DNT.bam bam (alignments); assembly: hg19; genome annotation: V19 4.9 GB
ENCFF755BWK.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 63.8 MB
ENCFF756KFH.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 91.7 MB
ENCFF759IKA.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 55.6 MB
ENCFF764XCR.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.8 MB
ENCFF774TYJ.bam bam (alignments); assembly: hg19; genome annotation: V19 2.4 GB
ENCFF776SDA.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 7.5 GB
ENCFF779QSD.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 117.1 MB
ENCFF792KSR.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 57.0 MB
ENCFF794UTP.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 55.0 MB
ENCFF796PHL.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.9 MB
ENCFF805MGK.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 89.5 MB
ENCFF818FTG.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 62.1 MB
ENCFF837IHJ.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 63.0 MB
ENCFF852ONK.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.8 MB
ENCFF852XFS.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 3.8 GB
ENCFF868BUU.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 90.8 MB
ENCFF873HOR.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 3.4 GB
ENCFF878FFE.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 89.6 MB
ENCFF903CON.fastq fastq (reads) 1.1 GB
ENCFF915QCR.bam bam (alignments); assembly: GRCh38; genome annotation: V24 2.5 GB
ENCFF927BCK.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF931ALI.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 108.4 MB
ENCFF948RXH.bam bam (alignments); assembly: GRCh38; genome annotation: V24 5.4 GB
ENCFF950FRN.fastq fastq (reads) 1.0 GB
ENCFF976NTS.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 86.2 MB
ENCFF981IZB.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 117.2 MB
ENCFF996AYY.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 100.2 MB
ENCSR971BTX ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) mock pulldown control experiment of ESRP1

1 data file
FileTypeSize
ENCFF517JVP.fastq fastq (reads) 222.9 MB
ENCSR200SAU ENCSR · via encode_api

eCLIP control experiment on K562 against DDX42

Homo sapiens

8 data files
FileTypeSize
ENCFF037AIE.fastq fastq (reads) 417.2 MB
ENCFF254IMV.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 19.3 MB
ENCFF378IEN.bam bam (alignments); assembly: GRCh38 378.0 MB
ENCFF379ULH.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 20.0 MB
ENCFF409TRK.fastq fastq (reads) 435.8 MB
ENCFF581XBE.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 20.0 MB
ENCFF623MFK.bam bam (alignments); assembly: hg19 377.2 MB
ENCFF847PAT.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 19.3 MB
ENCSR269ZAO ENCSR · via encode_api

RNA-seq on HepG2 cells treated with an shRNA knockdown against UTP18. (UTP18_BGHLV33)

Homo sapiens

92 data files
FileTypeSize
ENCFF012QOZ.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.5 MB
ENCFF025RNG.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 81.2 MB
ENCFF026DSE.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 81.0 MB
ENCFF043NQT.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 4.3 MB
ENCFF047OTV.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 93.5 MB
ENCFF053ZEU.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 85.0 MB
ENCFF061QWO.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF066LMO.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 6.3 GB
ENCFF074AJG.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 7.1 GB
ENCFF075GYT.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF092KPR.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 83.4 MB
ENCFF102XVG.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF103VZY.bam bam (alignments); assembly: GRCh38; genome annotation: V24 5.7 GB
ENCFF119XOV.bam bam (alignments); assembly: hg19; genome annotation: V19 4.5 GB
ENCFF135HVO.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 77.9 MB
ENCFF142CMC.bam bam (alignments); assembly: GRCh38; genome annotation: V29 5.7 GB
ENCFF155YES.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.0 MB
ENCFF158ATY.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 86.9 MB
ENCFF171FNO.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 84.6 MB
ENCFF202TGW.bam bam (alignments); assembly: hg19; genome annotation: V19 5.4 GB
ENCFF206DWC.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 82.7 MB
ENCFF209NHJ.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.3 MB
ENCFF216IHO.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 85.7 MB
ENCFF219OWH.bam bam (alignments); assembly: hg19; genome annotation: V19 4.6 GB
ENCFF220TTF.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 82.6 MB
ENCFF222QAI.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 77.9 MB
ENCFF225RUG.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF250FFD.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 95.5 MB
ENCFF257FKO.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 77.8 MB
ENCFF273XDC.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 76.8 MB
ENCFF275UEU.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 75.4 MB
ENCFF302THZ.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF312XOU.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.7 GB
ENCFF326QFF.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 6.6 GB
ENCFF330KIF.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 86.9 MB
ENCFF331CEB.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 16.9 MB
ENCFF352GHD.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 78.7 MB
ENCFF371XWY.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 93.9 MB
ENCFF382EMX.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 86.8 MB
ENCFF384KOK.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 75.4 MB
ENCFF385IHE.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 84.6 MB
ENCFF411XCV.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 83.4 MB
ENCFF429VRZ.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 79.9 MB
ENCFF434GUP.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 96.0 MB
ENCFF442YUZ.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 82.8 MB
ENCFF444BKK.fastq fastq (reads) 3.0 GB
ENCFF452EMG.bam bam (alignments); assembly: GRCh38; genome annotation: V24 5.6 GB
ENCFF452ICY.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 78.9 MB
ENCFF452ZCF.bam bam (alignments); assembly: hg19; genome annotation: V19 4.6 GB
ENCFF468UQW.bam bam (alignments); assembly: GRCh38; genome annotation: V29 5.6 GB
ENCFF491LSG.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 85.6 MB
ENCFF501ZSN.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 92.0 MB
ENCFF513YMD.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 95.2 MB
ENCFF520SJB.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 85.7 MB
ENCFF542XAO.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 7.5 GB
ENCFF548OTW.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 93.5 MB
ENCFF549LTF.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 80.1 MB
ENCFF576LMK.bam bam (alignments); assembly: hg19; genome annotation: V19 4.5 GB
ENCFF577BJT.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 94.2 MB
ENCFF586ZNH.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 84.4 MB
ENCFF601PIY.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 3.5 MB
ENCFF603PDU.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 81.0 MB
ENCFF605VXW.fastq fastq (reads) 3.1 GB
ENCFF633YPB.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF640ECA.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.6 GB
ENCFF681QBU.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 94.2 MB
ENCFF689OMV.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 83.0 MB
ENCFF719BNL.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 96.0 MB
ENCFF735PWU.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 83.4 MB
ENCFF768VZA.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 83.4 MB
ENCFF769BSG.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.5 MB
ENCFF771AWU.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF783IAP.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF790GEI.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF808NQJ.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 84.2 MB
ENCFF827AMR.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 79.2 MB
ENCFF830LLT.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.6 MB
ENCFF831WGP.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 76.8 MB
ENCFF833GKU.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.4 MB
ENCFF848WYS.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 5.6 MB
ENCFF854OTA.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 73.2 MB
ENCFF860PHK.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 4.3 MB
ENCFF913ZEI.fastq fastq (reads) 3.1 GB
ENCFF924EZD.fastq fastq (reads) 3.0 GB
ENCFF933ROZ.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 6.3 GB
ENCFF934HHN.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 6.6 GB
ENCFF946BAP.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 85.6 MB
ENCFF952TUA.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 95.2 MB
ENCFF955WAO.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 93.5 MB
ENCFF976JTC.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.9 MB
ENCFF977IXL.bam bam (alignments); assembly: hg19; genome annotation: V19 5.5 GB
ENCFF977UDP.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCSR347ZHQ ENCSR · via encode_api

shRNA knockdown against XRN2 in HepG2 cells followed by RNA-seq. (XRN2_BGHLV17)

Homo sapiens

92 data files
FileTypeSize
ENCFF002RWS.bam bam (alignments); assembly: GRCh38; genome annotation: V24 5.0 GB
ENCFF007GIH.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 83.9 MB
ENCFF011SMR.fastq fastq (reads) 2.9 GB
ENCFF013MHU.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 72.8 MB
ENCFF030GID.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF047LJT.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 7.4 GB
ENCFF061USF.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF064TWV.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.2 GB
ENCFF072DRB.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 76.8 MB
ENCFF079YBM.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.8 MB
ENCFF108JNY.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 85.7 MB
ENCFF135JNM.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 77.8 MB
ENCFF141NZZ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 75.1 MB
ENCFF147IIW.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 74.6 MB
ENCFF185KWL.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 72.6 MB
ENCFF194ZCD.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF195DTQ.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 83.7 MB
ENCFF213AJJ.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 72.2 MB
ENCFF213VTI.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 6.4 GB
ENCFF217RGZ.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 80.0 MB
ENCFF226WWD.bam bam (alignments); assembly: hg19; genome annotation: V19 4.2 GB
ENCFF236OXV.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 78.9 MB
ENCFF237RTW.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 72.9 MB
ENCFF243JXJ.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 4.2 MB
ENCFF261WJS.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF291QGZ.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 6.6 GB
ENCFF309BOB.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 75.6 MB
ENCFF311KCE.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 77.0 MB
ENCFF317GTG.fastq fastq (reads) 2.8 GB
ENCFF318FQC.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 86.7 MB
ENCFF322LTW.bam bam (alignments); assembly: hg19; genome annotation: V19 4.2 GB
ENCFF329LWA.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.9 MB
ENCFF332ZNI.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 6.5 GB
ENCFF350KCP.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF358RSR.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 76.7 MB
ENCFF363UJX.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF373FPM.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 79.3 MB
ENCFF392YXI.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 85.7 MB
ENCFF395QWY.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 83.8 MB
ENCFF400YQS.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 79.3 MB
ENCFF401PDR.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF407VNE.bam bam (alignments); assembly: hg19; genome annotation: V19 4.2 GB
ENCFF413QRU.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 70.3 MB
ENCFF416VLQ.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 77.9 MB
ENCFF423DIO.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 78.8 MB
ENCFF432LNX.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 79.2 MB
ENCFF438PVX.fastq fastq (reads) 2.8 GB
ENCFF450HWR.bam bam (alignments); assembly: hg19; genome annotation: V19 5.0 GB
ENCFF454SOJ.fastq fastq (reads) 2.7 GB
ENCFF458IUV.bam bam (alignments); assembly: hg19; genome annotation: V19 4.2 GB
ENCFF468PNY.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 74.2 MB
ENCFF472BSS.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 85.8 MB
ENCFF488QVJ.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 74.7 MB
ENCFF492KDC.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF496SJF.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 76.4 MB
ENCFF511EKA.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 83.7 MB
ENCFF549QFR.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 3.4 MB
ENCFF551LBD.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 5.5 MB
ENCFF568PCO.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 78.8 MB
ENCFF586QIW.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 78.8 MB
ENCFF593JJK.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 6.5 GB
ENCFF619EBQ.bam bam (alignments); assembly: GRCh38; genome annotation: V24 5.1 GB
ENCFF619MXH.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 74.7 MB
ENCFF633QXY.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 76.8 MB
ENCFF673KHB.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 72.5 MB
ENCFF678QVV.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.3 MB
ENCFF680CMV.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 70.3 MB
ENCFF684MBB.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 3.0 MB
ENCFF686CBM.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 84.7 MB
ENCFF686OAP.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.2 GB
ENCFF690UHQ.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 76.3 MB
ENCFF694IHF.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF699FOP.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 7.3 GB
ENCFF704XUG.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 76.6 MB
ENCFF735XHK.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.3 MB
ENCFF765YSL.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF789QEA.bam bam (alignments); assembly: hg19; genome annotation: V19 5.0 GB
ENCFF804PWT.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF804TFF.bam bam (alignments); assembly: GRCh38; genome annotation: V29 5.0 GB
ENCFF808XVB.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 76.7 MB
ENCFF822KOL.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 79.9 MB
ENCFF835DBH.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 16.1 MB
ENCFF863NBZ.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF870CHU.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 84.7 MB
ENCFF875NQR.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 86.7 MB
ENCFF899WWJ.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 4.3 MB
ENCFF914GKJ.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 78.6 MB
ENCFF936NUD.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 85.7 MB
ENCFF945MJG.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 76.4 MB
ENCFF954PMX.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 72.0 MB
ENCFF958VEJ.bam bam (alignments); assembly: GRCh38; genome annotation: V29 5.1 GB
ENCFF963FQG.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 78.1 MB
ENCSR214BZA ENCSR · via encode_api

eCLIP experiment on HepG2 against DDX59

Homo sapiens

34 data files
FileTypeSize
ENCFF018RKD.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 14.2 MB
ENCFF074EQM.bed bed (peaks); assembly: hg19 67.9 KB
ENCFF103EDF.bigBed bigBed (peaks); assembly: GRCh38 3.5 MB
ENCFF112UBR.bam bam (alignments); assembly: hg19 264.2 MB
ENCFF115ZKB.bed bed (peaks); assembly: hg19 530.2 KB
ENCFF191WAJ.fastq fastq (reads) 407.7 MB
ENCFF213PRP.bed bed (peaks); assembly: GRCh38 1.3 MB
ENCFF225KVF.bigBed bigBed (peaks); assembly: GRCh38 2.6 MB
ENCFF233GUF.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 20.2 MB
ENCFF237BSF.bigBed bigBed (peaks); assembly: hg19 2.7 MB
ENCFF292WGO.bigBed bigBed (peaks); assembly: hg19 993.0 KB
ENCFF298QDG.fastq fastq (reads) 607.2 MB
ENCFF362KWY.bam bam (alignments); assembly: GRCh38 254.6 MB
ENCFF373XJU.bigBed bigBed (peaks); assembly: hg19 1011.5 KB
ENCFF441KPC.bed bed (peaks); assembly: hg19 1.3 MB
ENCFF447KAW.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 13.6 MB
ENCFF463LTL.bed bed (peaks); assembly: hg19 512.4 KB
ENCFF472QKI.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 20.4 MB
ENCFF480MRD.bam bam (alignments); assembly: hg19 398.8 MB
ENCFF485MSN.bed bed (peaks); assembly: hg19 1.8 MB
ENCFF489JEJ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 14.7 MB
ENCFF538KWA.bam bam (alignments); assembly: GRCh38 386.1 MB
ENCFF546NOY.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 19.8 MB
ENCFF630DNS.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 14.0 MB
ENCFF656DVH.bigBed bigBed (peaks); assembly: GRCh38 437.8 KB
ENCFF703NTG.bigBed bigBed (peaks); assembly: hg19 3.6 MB
ENCFF731EXL.bigBed bigBed (peaks); assembly: GRCh38 437.6 KB
ENCFF735YZN.fastq fastq (reads) 567.4 MB
ENCFF751GMU.bed bed (peaks); assembly: GRCh38 175.4 KB
ENCFF828OKI.fastq fastq (reads) 378.9 MB
ENCFF842ALM.bed bed (peaks); assembly: GRCh38 177.7 KB
ENCFF899AWZ.bed bed (peaks); assembly: GRCh38 68.5 KB
ENCFF924DAL.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 20.9 MB
ENCFF991VJI.bed bed (peaks); assembly: GRCh38 1.7 MB
ENCSR112YTD ENCSR · via encode_api

RNA-seq on K562 cells treated with an shRNA knockdown against SLBP. (SLBP_BGKLV24)

Homo sapiens

92 data files
FileTypeSize
ENCFF064ZZS.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 76.7 MB
ENCFF065GZV.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 69.4 MB
ENCFF073FLU.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF075HYV.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 5.5 MB
ENCFF085DGD.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 67.5 MB
ENCFF122UFL.fastq fastq (reads) 1.8 GB
ENCFF139IZU.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF153JAE.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF162PLA.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 71.2 MB
ENCFF181VEZ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 70.4 MB
ENCFF193ZVT.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF198BFB.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 64.0 MB
ENCFF200UXN.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 77.4 MB
ENCFF205NIL.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 62.0 MB
ENCFF212KXZ.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 75.2 MB
ENCFF215RZE.bam bam (alignments); assembly: hg19; genome annotation: V19 2.9 GB
ENCFF218MPA.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 66.8 MB
ENCFF221OYO.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 3.6 GB
ENCFF222LJD.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 69.2 MB
ENCFF222UPB.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 70.4 MB
ENCFF239RGX.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 4.2 MB
ENCFF242MBJ.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 69.5 MB
ENCFF243TRW.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 71.9 MB
ENCFF260JUT.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.3 GB
ENCFF299VYN.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 70.9 MB
ENCFF306ULN.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 68.5 MB
ENCFF309GOJ.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 67.9 MB
ENCFF313DGA.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 60.2 MB
ENCFF346XLY.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 3.3 MB
ENCFF348NXB.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF352DUB.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 4.1 GB
ENCFF358FVA.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 69.8 MB
ENCFF358SKF.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 65.2 MB
ENCFF371GND.bam bam (alignments); assembly: hg19; genome annotation: V19 2.7 GB
ENCFF379DBT.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 60.8 MB
ENCFF390ZJF.bam bam (alignments); assembly: GRCh38; genome annotation: V24 2.7 GB
ENCFF419TXS.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 79.4 MB
ENCFF429SZM.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF445AYD.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 66.2 MB
ENCFF448HII.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.3 MB
ENCFF458IHG.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 66.9 MB
ENCFF492YNE.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 77.7 MB
ENCFF505ZBB.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 66.2 MB
ENCFF511VSI.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 67.8 MB
ENCFF513WDJ.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 64.4 MB
ENCFF516HXU.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 78.5 MB
ENCFF519RFX.fastq fastq (reads) 1.8 GB
ENCFF529LXV.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF541CKJ.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 70.1 MB
ENCFF542EYF.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 68.8 MB
ENCFF543LCZ.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF544CQI.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 77.7 MB
ENCFF569ZVG.bam bam (alignments); assembly: hg19; genome annotation: V19 2.7 GB
ENCFF579RKL.bam bam (alignments); assembly: hg19; genome annotation: V19 3.2 GB
ENCFF586MXV.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 76.3 MB
ENCFF594BFW.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF603BJD.bam bam (alignments); assembly: GRCh38; genome annotation: V29 3.5 GB
ENCFF613PLF.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF614YWP.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.9 MB
ENCFF616DAQ.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF637WMS.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 68.7 MB
ENCFF643OCB.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 3.1 MB
ENCFF645SBL.bam bam (alignments); assembly: GRCh38; genome annotation: V29 3.3 GB
ENCFF654RRJ.fastq fastq (reads) 1.7 GB
ENCFF656DYW.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 65.5 MB
ENCFF664FAH.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 64.9 MB
ENCFF671QCH.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 70.7 MB
ENCFF674VJU.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 65.2 MB
ENCFF680SRB.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.8 MB
ENCFF710YMV.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 66.2 MB
ENCFF741VFO.bam bam (alignments); assembly: hg19; genome annotation: V19 3.4 GB
ENCFF746HQF.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.9 MB
ENCFF746ZYT.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF754IOS.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.3 MB
ENCFF789RAG.bam bam (alignments); assembly: GRCh38; genome annotation: V24 2.9 GB
ENCFF799MEY.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 3.6 GB
ENCFF802JXU.bam bam (alignments); assembly: hg19; genome annotation: V19 2.9 GB
ENCFF817LJY.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 76.7 MB
ENCFF840EFF.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.5 GB
ENCFF860HSI.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 69.6 MB
ENCFF865PBA.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 4.5 GB
ENCFF878OYK.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 78.4 MB
ENCFF888CAR.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 70.1 MB
ENCFF906NYG.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 4.0 GB
ENCFF916EVY.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 79.4 MB
ENCFF953UEI.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 78.4 MB
ENCFF959EDR.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 13.1 MB
ENCFF972QBV.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 66.6 MB
ENCFF973MDK.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 62.5 MB
ENCFF984WAP.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 67.4 MB
ENCFF994PGX.fastq fastq (reads) 1.9 GB
ENCFF999KVU.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 3.9 GB
ENCSR639LKS ENCSR · via encode_api

shRNA knockdown against FKBP4 in HepG2 cells followed by RNA-seq. (FKBP4_BGHLV17)

Homo sapiens

92 data files
FileTypeSize
ENCFF004PMF.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 92.2 MB
ENCFF022ZAZ.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF028VGL.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 76.4 MB
ENCFF043BHT.bam bam (alignments); assembly: GRCh38; genome annotation: V29 3.1 GB
ENCFF067HFG.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 94.0 MB
ENCFF071HGB.fastq fastq (reads) 3.2 GB
ENCFF075KAE.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 55.0 MB
ENCFF079VNE.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 51.2 MB
ENCFF107HUY.fastq fastq (reads) 1.6 GB
ENCFF113BCS.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 53.7 MB
ENCFF114VFW.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 3.0 MB
ENCFF117ZYM.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 62.2 MB
ENCFF193SLO.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 85.1 MB
ENCFF197FBR.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 77.8 MB
ENCFF199XRZ.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.9 MB
ENCFF212DSP.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 83.3 MB
ENCFF232XAN.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF234REI.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF257YRE.bam bam (alignments); assembly: hg19; genome annotation: V19 5.8 GB
ENCFF280PUO.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 86.3 MB
ENCFF280RZT.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 15.4 MB
ENCFF293JCJ.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 79.0 MB
ENCFF300XTR.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 4.1 GB
ENCFF301MLF.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 61.9 MB
ENCFF303AED.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 79.9 MB
ENCFF310JTF.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 94.1 MB
ENCFF314ETQ.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 3.6 GB
ENCFF333XHH.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF334AAT.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 57.0 MB
ENCFF342NSA.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 83.5 MB
ENCFF349HFT.bam bam (alignments); assembly: GRCh38; genome annotation: V24 6.0 GB
ENCFF355AAY.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 5.6 MB
ENCFF362HQF.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 86.3 MB
ENCFF377GZT.bam bam (alignments); assembly: hg19; genome annotation: V19 5.0 GB
ENCFF435EXU.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.2 MB
ENCFF446FQD.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 56.3 MB
ENCFF460IKC.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 54.0 MB
ENCFF462DOK.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF466OEE.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 52.5 MB
ENCFF468CWO.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 92.2 MB
ENCFF473JEF.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 56.2 MB
ENCFF480NVS.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 57.7 MB
ENCFF482ABW.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 52.7 MB
ENCFF482EXB.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 56.2 MB
ENCFF495DZW.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 8.1 GB
ENCFF540QCM.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 81.3 MB
ENCFF543ZKR.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 3.6 GB
ENCFF552BYK.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF568KHX.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 57.5 MB
ENCFF590SVM.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF603WBK.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 93.9 MB
ENCFF615BYF.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.8 MB
ENCFF624ADG.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF632HXZ.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF635BOE.bam bam (alignments); assembly: hg19; genome annotation: V19 2.6 GB
ENCFF655OGA.bam bam (alignments); assembly: hg19; genome annotation: V19 2.6 GB
ENCFF656RLW.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 57.8 MB
ENCFF658FPH.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 3.6 MB
ENCFF663YGQ.fastq fastq (reads) 3.3 GB
ENCFF698KSC.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 61.9 MB
ENCFF710KYG.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 49.7 MB
ENCFF727DAM.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 7.3 GB
ENCFF741KMJ.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 82.9 MB
ENCFF761XGP.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF761ZSI.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 61.2 MB
ENCFF762SBM.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.8 MB
ENCFF764KJW.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.1 GB
ENCFF778TSO.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 84.5 MB
ENCFF778UNC.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 54.1 MB
ENCFF781GCC.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 57.7 MB
ENCFF791HCK.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 83.8 MB
ENCFF796LUO.bam bam (alignments); assembly: hg19; genome annotation: V19 5.0 GB
ENCFF796SHO.fastq fastq (reads) 1.7 GB
ENCFF801LOD.bam bam (alignments); assembly: GRCh38; genome annotation: V24 2.6 GB
ENCFF811YVN.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 81.1 MB
ENCFF815ZSZ.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 56.2 MB
ENCFF819IHE.bam bam (alignments); assembly: GRCh38; genome annotation: V24 5.1 GB
ENCFF820ZFG.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 92.2 MB
ENCFF840XZX.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 63.2 MB
ENCFF841RAK.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 4.2 MB
ENCFF844RJG.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 86.2 MB
ENCFF846LVD.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 55.9 MB
ENCFF869JWN.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF886PXP.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 7.2 GB
ENCFF898HLC.bam bam (alignments); assembly: GRCh38; genome annotation: V29 6.0 GB
ENCFF943FVL.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 63.2 MB
ENCFF959ZEM.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.4 MB
ENCFF965OQP.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 78.9 MB
ENCFF976BBU.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 86.0 MB
ENCFF980XPR.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.7 MB
ENCFF982ALW.bam bam (alignments); assembly: hg19; genome annotation: V19 3.0 GB
ENCFF994ZIZ.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 83.8 MB
ENCSR850CKU ENCSR · via encode_api

shRNA knockdown against KHSRP in HepG2 cells followed by RNA-seq. (KHSRP-BGHLV12)

Homo sapiens

92 data files
FileTypeSize
ENCFF003XQY.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 90.4 MB
ENCFF014DYQ.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 86.2 MB
ENCFF018QNI.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 83.6 MB
ENCFF021RRG.bam bam (alignments); assembly: hg19; genome annotation: V19 6.2 GB
ENCFF036GZV.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF061SYF.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.4 MB
ENCFF078HUJ.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF088UBO.bam bam (alignments); assembly: GRCh38; genome annotation: V29 6.5 GB
ENCFF096YJH.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF106KRG.bam bam (alignments); assembly: GRCh38; genome annotation: V29 6.1 GB
ENCFF129HWJ.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 75.2 MB
ENCFF130KHX.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 82.4 MB
ENCFF131WWJ.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 93.8 MB
ENCFF136ITT.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 88.2 MB
ENCFF140RIP.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 85.6 MB
ENCFF145DKQ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 85.6 MB
ENCFF157UTY.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 100.8 MB
ENCFF159AFB.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 77.2 MB
ENCFF159HBP.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.9 MB
ENCFF191MCD.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 91.7 MB
ENCFF200DSC.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 80.4 MB
ENCFF206YDT.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 88.2 MB
ENCFF210AMX.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF217YPX.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 89.4 MB
ENCFF219HMO.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 78.9 MB
ENCFF220BTJ.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF224EJA.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.8 MB
ENCFF235TZM.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 85.5 MB
ENCFF239VGX.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 5.6 MB
ENCFF272PZS.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 93.2 MB
ENCFF275GXI.bam bam (alignments); assembly: GRCh38; genome annotation: V24 6.1 GB
ENCFF281VIP.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 3.4 MB
ENCFF293XCO.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 83.5 MB
ENCFF297XVZ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 92.6 MB
ENCFF310LTU.bam bam (alignments); assembly: hg19; genome annotation: V19 5.7 GB
ENCFF313MIB.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF325NGU.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF328GAZ.bam bam (alignments); assembly: GRCh38; genome annotation: V24 6.5 GB
ENCFF352XYM.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 98.9 MB
ENCFF361UZE.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 94.7 MB
ENCFF369AGC.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 7.3 GB
ENCFF380MFO.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 91.9 MB
ENCFF384QKY.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 83.5 MB
ENCFF389VNI.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 4.0 MB
ENCFF400NZU.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF448EXF.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 86.0 MB
ENCFF450ITZ.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 92.6 MB
ENCFF454KMT.fastq fastq (reads) 3.3 GB
ENCFF454ZJD.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 100.8 MB
ENCFF459KIY.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 80.7 MB
ENCFF461CJW.bam bam (alignments); assembly: hg19; genome annotation: V19 5.2 GB
ENCFF464NDW.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 7.4 GB
ENCFF491ITH.fastq fastq (reads) 3.2 GB
ENCFF503DTY.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 92.4 MB
ENCFF519WIG.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 94.1 MB
ENCFF526UIN.bam bam (alignments); assembly: hg19; genome annotation: V19 4.8 GB
ENCFF529FCM.bam bam (alignments); assembly: GRCh38; genome annotation: V24 5.4 GB
ENCFF531XIS.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 8.0 GB
ENCFF559MTH.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.9 MB
ENCFF593PDW.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 89.6 MB
ENCFF600CRA.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 93.2 MB
ENCFF603NKZ.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 94.7 MB
ENCFF621GKD.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 84.0 MB
ENCFF624GLA.bam bam (alignments); assembly: hg19; genome annotation: V19 4.8 GB
ENCFF624SWT.bam bam (alignments); assembly: GRCh38; genome annotation: V24 5.0 GB
ENCFF631BRM.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 100.3 MB
ENCFF635IHA.fastq fastq (reads) 3.5 GB
ENCFF638CCF.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 87.7 MB
ENCFF646DLE.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 8.3 GB
ENCFF655WDW.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 99.3 MB
ENCFF672BLS.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF693JUE.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 91.5 MB
ENCFF699FPO.bam bam (alignments); assembly: hg19; genome annotation: V19 5.2 GB
ENCFF730SRX.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 87.5 MB
ENCFF803CVX.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 8.1 GB
ENCFF813VLL.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 82.2 MB
ENCFF829GJN.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 80.6 MB
ENCFF830ITP.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF836DLZ.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.4 MB
ENCFF836UGJ.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 86.2 MB
ENCFF837DMD.fastq fastq (reads) 3.5 GB
ENCFF848BSE.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF857IEY.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 84.8 MB
ENCFF857RJK.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 85.9 MB
ENCFF904RVJ.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 81.4 MB
ENCFF910HYZ.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 99.3 MB
ENCFF938TRO.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 9.1 GB
ENCFF944CVW.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 90.4 MB
ENCFF948QYB.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 89.8 MB
ENCFF951QIU.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 4.3 MB
ENCFF989DOS.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 16.8 MB
ENCFF990AGE.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCSR237YZT ENCSR · via encode_api

Control shRNA against no target in HepG2 cells followed by RNA-seq. (NT-BGHLV12-01-02)

Homo sapiens

84 data files
FileTypeSize
ENCFF008RON.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.9 GB
ENCFF010FVE.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 67.6 MB
ENCFF010LEK.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 66.0 MB
ENCFF017SPB.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.9 MB
ENCFF025LXR.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF037HIU.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 66.6 MB
ENCFF052HTH.bam bam (alignments); assembly: hg19; genome annotation: V19 5.0 GB
ENCFF058KGP.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 8.7 GB
ENCFF069LMB.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.4 MB
ENCFF088SQC.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 8.2 GB
ENCFF104VHI.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 72.6 MB
ENCFF135JAO.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 7.8 GB
ENCFF137BLD.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 69.1 MB
ENCFF138BRX.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 70.5 MB
ENCFF146PEV.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 72.6 MB
ENCFF152TNY.bam bam (alignments); assembly: hg19; genome annotation: V19 4.7 GB
ENCFF164NTY.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 69.6 MB
ENCFF200OMG.fastq fastq (reads) 3.4 GB
ENCFF234OEL.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 64.9 MB
ENCFF236PZJ.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 78.6 MB
ENCFF256EGE.bam bam (alignments); assembly: GRCh38; genome annotation: V24 5.3 GB
ENCFF256PYY.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 72.6 MB
ENCFF288DKU.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 74.3 MB
ENCFF294ZYG.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.5 MB
ENCFF316ORK.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.9 MB
ENCFF318WEH.bam bam (alignments); assembly: hg19; genome annotation: V19 5.0 GB
ENCFF322NSI.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 70.7 MB
ENCFF331RON.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 68.1 MB
ENCFF335ETY.bam bam (alignments); assembly: GRCh38; genome annotation: V29 6.4 GB
ENCFF347VFR.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 70.7 MB
ENCFF360UZH.bam bam (alignments); assembly: GRCh38; genome annotation: V24 6.4 GB
ENCFF363RYS.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 8.3 GB
ENCFF391ZGA.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 66.7 MB
ENCFF392BQX.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 69.9 MB
ENCFF395XYD.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.4 MB
ENCFF406HXC.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 75.6 MB
ENCFF415ESF.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF426WQP.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 68.1 MB
ENCFF427UKK.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF437JLM.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 75.6 MB
ENCFF441XPZ.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 69.2 MB
ENCFF457MGO.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 76.6 MB
ENCFF472PWA.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 65.0 MB
ENCFF482FFF.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 66.0 MB
ENCFF485DBN.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 72.1 MB
ENCFF501SBN.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 64.4 MB
ENCFF512HMK.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 77.9 MB
ENCFF534KBE.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 9.3 GB
ENCFF548ZDN.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF558ZFO.bam bam (alignments); assembly: hg19; genome annotation: V19 5.9 GB
ENCFF582KKE.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 74.1 MB
ENCFF582VHJ.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 70.6 MB
ENCFF588EZL.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.3 MB
ENCFF609FFR.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 25.0 MB
ENCFF619LUS.fastq fastq (reads) 3.4 GB
ENCFF632ICJ.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 69.2 MB
ENCFF648KYY.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 68.4 MB
ENCFF737RPS.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 71.1 MB
ENCFF739TDR.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 67.7 MB
ENCFF745CDS.bam bam (alignments); assembly: GRCh38; genome annotation: V29 5.9 GB
ENCFF746GXZ.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 72.6 MB
ENCFF754ENE.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 70.8 MB
ENCFF773TGR.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 70.7 MB
ENCFF779AVR.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 69.5 MB
ENCFF785WTG.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF786WDF.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 25.0 MB
ENCFF792VWR.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 63.6 MB
ENCFF794CUL.fastq fastq (reads) 3.2 GB
ENCFF798ILB.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 75.6 MB
ENCFF801YDB.fastq fastq (reads) 3.1 GB
ENCFF812SMO.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 68.2 MB
ENCFF847IYD.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.3 MB
ENCFF856SSY.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 7.7 GB
ENCFF857QSU.bam bam (alignments); assembly: hg19; genome annotation: V19 4.7 GB
ENCFF885KBS.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 66.8 MB
ENCFF888FSP.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 65.4 MB
ENCFF923JTZ.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 77.1 MB
ENCFF925CTT.bam bam (alignments); assembly: GRCh38; genome annotation: V24 5.9 GB
ENCFF940ZEH.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 74.1 MB
ENCFF952WAK.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 67.8 MB
ENCFF952WQG.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 69.9 MB
ENCFF953FEN.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 77.0 MB
ENCFF988SLF.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 78.5 MB
ENCFF989TXQ.bam bam (alignments); assembly: hg19; genome annotation: V19 5.6 GB
ENCSR960GMF ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) mock pulldown control experiment of SRSF2

1 data file
FileTypeSize
ENCFF889JSB.fastq fastq (reads) 39.4 MB
ENCSR082UWF ENCSR · via encode_api

RNA-seq on K562 cells treated with an shRNA knockdown against STIP1. (STIP1_BGKLV24_B)

Homo sapiens

92 data files
FileTypeSize
ENCFF012EYZ.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 110.1 MB
ENCFF014GXU.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 85.5 MB
ENCFF028RML.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 81.2 MB
ENCFF038HEI.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 95.3 MB
ENCFF040JUJ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 89.0 MB
ENCFF049ALV.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.7 MB
ENCFF062UIG.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 79.9 MB
ENCFF066JOO.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 3.7 MB
ENCFF097LCD.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 97.3 MB
ENCFF108EEW.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 87.5 MB
ENCFF120UMY.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 111.2 MB
ENCFF136NGS.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 86.0 MB
ENCFF142LOB.bam bam (alignments); assembly: hg19; genome annotation: V19 6.1 GB
ENCFF151YNB.bam bam (alignments); assembly: hg19; genome annotation: V19 7.1 GB
ENCFF230BFU.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 4.3 MB
ENCFF231FXR.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 99.6 MB
ENCFF249HNP.bam bam (alignments); assembly: GRCh38; genome annotation: V29 7.3 GB
ENCFF256CBG.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 7.6 GB
ENCFF259CCL.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.5 MB
ENCFF276IAT.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 97.8 MB
ENCFF284WNJ.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 97.7 MB
ENCFF287PZZ.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 6.6 GB
ENCFF289HLB.fastq fastq (reads) 3.4 GB
ENCFF295ILB.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 7.6 GB
ENCFF317BRO.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 86.5 MB
ENCFF323BUZ.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.5 MB
ENCFF354KOC.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 100.7 MB
ENCFF356KOS.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 90.8 MB
ENCFF359WKO.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 89.1 MB
ENCFF371YBF.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 25.0 MB
ENCFF396QZZ.bam bam (alignments); assembly: GRCh38; genome annotation: V24 6.2 GB
ENCFF398GBE.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 111.2 MB
ENCFF398XKJ.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 97.5 MB
ENCFF419OZO.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 83.1 MB
ENCFF424YGI.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 79.5 MB
ENCFF429JJE.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF443NTP.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.9 MB
ENCFF445GSX.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 100.7 MB
ENCFF447HTS.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 99.4 MB
ENCFF461BQM.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 112.6 MB
ENCFF466BYB.bam bam (alignments); assembly: GRCh38; genome annotation: V24 7.3 GB
ENCFF489IZZ.fastq fastq (reads) 3.9 GB
ENCFF493HBD.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 87.0 MB
ENCFF518QPE.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF533GLS.fastq fastq (reads) 3.3 GB
ENCFF536UTW.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 99.7 MB
ENCFF539PZN.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 75.5 MB
ENCFF543LNI.bam bam (alignments); assembly: hg19; genome annotation: V19 5.1 GB
ENCFF550GFC.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 4.5 MB
ENCFF566HFT.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 92.3 MB
ENCFF569RZS.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 84.7 MB
ENCFF597ZWI.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 99.6 MB
ENCFF610XKE.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 88.1 MB
ENCFF624LDA.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 88.6 MB
ENCFF636KGD.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 16.1 MB
ENCFF652NUY.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.9 MB
ENCFF662ELS.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.4 MB
ENCFF672YJD.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 7.4 GB
ENCFF677XLN.bam bam (alignments); assembly: GRCh38; genome annotation: V24 6.0 GB
ENCFF696AJS.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 85.3 MB
ENCFF701SDU.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 97.5 MB
ENCFF702NXP.fastq fastq (reads) 4.0 GB
ENCFF712REF.bam bam (alignments); assembly: GRCh38; genome annotation: V29 6.2 GB
ENCFF751CLQ.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF765MIB.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 8.6 GB
ENCFF783EZE.bam bam (alignments); assembly: hg19; genome annotation: V19 5.1 GB
ENCFF790LUK.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.4 MB
ENCFF796ZZY.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 87.5 MB
ENCFF801DMJ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 77.6 MB
ENCFF802SMN.bam bam (alignments); assembly: GRCh38; genome annotation: V24 5.2 GB
ENCFF803TIU.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.4 MB
ENCFF804XHD.bam bam (alignments); assembly: hg19; genome annotation: V19 5.9 GB
ENCFF806FRX.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.0 MB
ENCFF822KWP.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 112.6 MB
ENCFF861XZX.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 99.4 MB
ENCFF876TRQ.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 96.4 MB
ENCFF876YJQ.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.4 MB
ENCFF907SDL.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 93.9 MB
ENCFF908DEO.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 90.8 MB
ENCFF911QYF.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 6.5 GB
ENCFF911XVW.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 99.1 MB
ENCFF913ZGU.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.7 MB
ENCFF922YML.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 89.1 MB
ENCFF933ATM.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 5.6 MB
ENCFF938GGC.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 99.4 MB
ENCFF939VXA.bam bam (alignments); assembly: hg19; genome annotation: V19 5.9 GB
ENCFF961ORE.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 89.0 MB
ENCFF964LLT.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF969AGE.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 111.5 MB
ENCFF973PLS.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 81.9 MB
ENCFF975NVW.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 86.7 MB
ENCFF989WPD.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 25.0 MB
ENCSR694VQW ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) input control experiment of SRSF2

1 data file
FileTypeSize
ENCFF087BBT.fastq fastq (reads) 413.1 MB
ENCSR939ZRA ENCSR · via encode_api

shRNA knockdown against RDBP in HepG2 cells followed by RNA-seq. (RDBP-BGHLV12)

Homo sapiens

92 data files
FileTypeSize
ENCFF014LTI.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 83.8 MB
ENCFF021UHZ.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF032VEQ.bam bam (alignments); assembly: GRCh38; genome annotation: V29 6.1 GB
ENCFF035GSF.fastq fastq (reads) 3.3 GB
ENCFF046QOU.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 96.4 MB
ENCFF077SKB.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 103.3 MB
ENCFF079NFD.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF082HAH.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 76.8 MB
ENCFF091TXV.bam bam (alignments); assembly: hg19; genome annotation: V19 6.0 GB
ENCFF120GBA.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 3.0 MB
ENCFF129UWD.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF136ISX.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 4.2 MB
ENCFF143BWV.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF147BWT.fastq fastq (reads) 3.1 GB
ENCFF189EGQ.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF206QHU.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF253BBR.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 84.1 MB
ENCFF256IJW.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 95.5 MB
ENCFF269RNF.bam bam (alignments); assembly: hg19; genome annotation: V19 4.7 GB
ENCFF288QOJ.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 101.6 MB
ENCFF304DMT.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 93.8 MB
ENCFF325YZA.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 84.2 MB
ENCFF339DQS.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 103.5 MB
ENCFF343QKG.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF361CFU.fastq fastq (reads) 3.0 GB
ENCFF361YWX.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 105.3 MB
ENCFF382WCS.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 81.7 MB
ENCFF393FGX.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 101.4 MB
ENCFF395TTG.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 86.3 MB
ENCFF401AVH.bam bam (alignments); assembly: hg19; genome annotation: V19 5.5 GB
ENCFF401GUV.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 95.9 MB
ENCFF413OSY.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 90.6 MB
ENCFF413USF.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 86.6 MB
ENCFF434IQF.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 95.4 MB
ENCFF434LRZ.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 87.2 MB
ENCFF445GJM.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.8 MB
ENCFF465CHW.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 95.4 MB
ENCFF478LQO.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 86.6 MB
ENCFF488LZB.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 89.1 MB
ENCFF490VBE.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 103.5 MB
ENCFF505HJW.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 85.5 MB
ENCFF512EJZ.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF534QWD.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF550YIV.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 8.5 GB
ENCFF553INJ.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 93.7 MB
ENCFF571WOJ.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 7.5 GB
ENCFF579BHG.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 85.7 MB
ENCFF581FWN.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 83.7 MB
ENCFF594XRY.bam bam (alignments); assembly: GRCh38; genome annotation: V24 5.1 GB
ENCFF605HTT.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 93.0 MB
ENCFF610OGZ.bam bam (alignments); assembly: GRCh38; genome annotation: V29 5.6 GB
ENCFF612GGG.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 84.3 MB
ENCFF615RZI.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 17.0 MB
ENCFF620TWD.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 6.9 GB
ENCFF628KMG.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 82.1 MB
ENCFF631SVL.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 7.0 GB
ENCFF633JDP.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 86.4 MB
ENCFF641NQX.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 96.4 MB
ENCFF652WRX.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 84.2 MB
ENCFF658ERE.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 79.2 MB
ENCFF662UAV.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 7.4 GB
ENCFF685RQP.bam bam (alignments); assembly: hg19; genome annotation: V19 5.1 GB
ENCFF686EWI.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 95.5 MB
ENCFF693AJN.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 79.4 MB
ENCFF695BDJ.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.4 MB
ENCFF695JZD.fastq fastq (reads) 3.3 GB
ENCFF699EYE.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 81.2 MB
ENCFF731OEM.bam bam (alignments); assembly: GRCh38; genome annotation: V24 6.1 GB
ENCFF733AZQ.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 4.4 MB
ENCFF735ZPS.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.0 MB
ENCFF740LDY.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 93.7 MB
ENCFF744XMW.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.5 MB
ENCFF748KAS.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF774XWB.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 3.5 MB
ENCFF775GAH.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 93.7 MB
ENCFF784MGC.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 7.9 GB
ENCFF799GVG.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 92.6 MB
ENCFF845XYP.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 86.4 MB
ENCFF847EPF.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 92.4 MB
ENCFF855BXQ.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 5.6 MB
ENCFF868PRY.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 79.0 MB
ENCFF874STK.bam bam (alignments); assembly: GRCh38; genome annotation: V24 5.6 GB
ENCFF885DDB.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 94.5 MB
ENCFF889VDW.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 94.0 MB
ENCFF899MWL.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.4 MB
ENCFF906CTR.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 97.7 MB
ENCFF926KAY.bam bam (alignments); assembly: hg19; genome annotation: V19 4.6 GB
ENCFF926TPN.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF931RCA.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.7 GB
ENCFF957GUJ.bam bam (alignments); assembly: hg19; genome annotation: V19 5.1 GB
ENCFF973AQO.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 89.6 MB
ENCFF981JDR.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 87.3 MB
ENCSR647NYX ENCSR · via encode_api

shRNA knockdown against NONO in HepG2 cells followed by RNA-seq. (NONO_BGHLV17)

Homo sapiens

92 data files
FileTypeSize
ENCFF013IBH.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 7.5 GB
ENCFF013XKA.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 5.3 GB
ENCFF077PWK.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 88.6 MB
ENCFF088FSU.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 82.7 MB
ENCFF093ACM.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF105VBQ.bam bam (alignments); assembly: GRCh38; genome annotation: V24 5.0 GB
ENCFF111FQL.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 94.7 MB
ENCFF149UWG.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.8 GB
ENCFF199SRT.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 84.8 MB
ENCFF201WEV.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF217UKR.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 70.1 MB
ENCFF232FPN.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 5.5 MB
ENCFF262BDB.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 85.4 MB
ENCFF269MHE.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 94.5 MB
ENCFF273SSV.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 88.8 MB
ENCFF285KHF.bam bam (alignments); assembly: GRCh38; genome annotation: V29 6.0 GB
ENCFF321RYV.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 81.6 MB
ENCFF322WYJ.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.8 MB
ENCFF348JKF.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 76.5 MB
ENCFF348TVM.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 84.9 MB
ENCFF352GSK.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF357ACC.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.4 MB
ENCFF379MUY.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 75.7 MB
ENCFF385QWY.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF388HYL.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 78.0 MB
ENCFF390LZU.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 76.5 MB
ENCFF409GWQ.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF411YAA.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 78.1 MB
ENCFF422ZGL.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 82.5 MB
ENCFF436OQJ.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.7 MB
ENCFF458MPJ.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.2 MB
ENCFF468PWL.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 88.2 MB
ENCFF470DJT.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 85.9 MB
ENCFF470UEC.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 78.5 MB
ENCFF471WCX.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 82.5 MB
ENCFF487NYF.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF494FQK.bam bam (alignments); assembly: hg19; genome annotation: V19 4.8 GB
ENCFF499GLR.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 6.7 GB
ENCFF501HOM.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 97.1 MB
ENCFF516KJE.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 84.5 MB
ENCFF517EWE.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 78.0 MB
ENCFF520RTL.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 5.9 GB
ENCFF521PWU.fastq fastq (reads) 2.4 GB
ENCFF531YVA.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.9 MB
ENCFF538KFW.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 15.3 MB
ENCFF561URG.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF567BLG.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 74.4 MB
ENCFF579CKQ.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 75.5 MB
ENCFF611UOD.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 71.6 MB
ENCFF635LAL.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 67.4 MB
ENCFF642MYT.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 88.1 MB
ENCFF651TPB.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 82.4 MB
ENCFF652HPC.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 86.0 MB
ENCFF671AYZ.bam bam (alignments); assembly: GRCh38; genome annotation: V29 4.6 GB
ENCFF694BIK.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.9 MB
ENCFF696HOI.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 79.7 MB
ENCFF699MBV.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 6.7 GB
ENCFF706SHF.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 82.4 MB
ENCFF713FZS.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 73.6 MB
ENCFF728ZHP.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 5.3 GB
ENCFF743IBK.bam bam (alignments); assembly: hg19; genome annotation: V19 3.7 GB
ENCFF748HNR.fastq fastq (reads) 3.0 GB
ENCFF757CMJ.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.5 MB
ENCFF764EWU.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 84.5 MB
ENCFF771BKB.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 3.5 MB
ENCFF780RTD.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF781GYO.fastq fastq (reads) 3.1 GB
ENCFF781MQN.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 86.9 MB
ENCFF806MZT.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 4.3 MB
ENCFF808KRB.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 85.8 MB
ENCFF808YTE.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.6 GB
ENCFF810OXT.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 4.3 MB
ENCFF842JJJ.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 76.1 MB
ENCFF848NKR.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 79.1 MB
ENCFF851IUJ.bam bam (alignments); assembly: GRCh38; genome annotation: V24 6.0 GB
ENCFF864MKV.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.7 MB
ENCFF876GWN.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 97.1 MB
ENCFF879KIT.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 79.2 MB
ENCFF881FJN.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 69.7 MB
ENCFF892QRH.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 73.6 MB
ENCFF894RUW.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 84.4 MB
ENCFF898MXS.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 96.6 MB
ENCFF902KNB.bam bam (alignments); assembly: hg19; genome annotation: V19 4.3 GB
ENCFF905RMN.bam bam (alignments); assembly: hg19; genome annotation: V19 4.8 GB
ENCFF912NCQ.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 94.7 MB
ENCFF916ZCG.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 75.6 MB
ENCFF934BDQ.fastq fastq (reads) 2.3 GB
ENCFF941TVW.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF954HRX.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 71.3 MB
ENCFF966TUI.bam bam (alignments); assembly: hg19; genome annotation: V19 5.6 GB
ENCFF971LQT.bam bam (alignments); assembly: hg19; genome annotation: V19 3.7 GB
ENCFF980UUN.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 72.1 MB
ENCSR269HQA ENCSR · via encode_api

RNA-seq on K562 cells treated with an shRNA knockdown against ILF3. (ILF3_BGKLV24)

Homo sapiens

92 data files
FileTypeSize
ENCFF005GDQ.fastq fastq (reads) 1.8 GB
ENCFF028MDN.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.8 MB
ENCFF030BHE.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 57.4 MB
ENCFF038CJZ.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 70.9 MB
ENCFF045TMO.bam bam (alignments); assembly: hg19; genome annotation: V19 2.6 GB
ENCFF063CCK.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 3.1 GB
ENCFF064BLM.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 55.7 MB
ENCFF064SWO.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 3.6 GB
ENCFF067WKG.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.1 GB
ENCFF073CLQ.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 60.5 MB
ENCFF077QDO.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 58.8 MB
ENCFF087HPN.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 64.1 MB
ENCFF091MEF.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 3.2 GB
ENCFF096XXP.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 3.7 GB
ENCFF098DMG.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 63.6 MB
ENCFF102SLI.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.8 MB
ENCFF116IKL.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 54.7 MB
ENCFF122DRJ.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 59.4 MB
ENCFF132WOO.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 4.1 MB
ENCFF134OCY.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 62.1 MB
ENCFF139CPF.bam bam (alignments); assembly: hg19; genome annotation: V19 2.2 GB
ENCFF153BJQ.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF168MEE.fastq fastq (reads) 1.4 GB
ENCFF176YUC.bam bam (alignments); assembly: hg19; genome annotation: V19 3.1 GB
ENCFF187ODB.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 65.9 MB
ENCFF194MVC.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 71.8 MB
ENCFF236YYQ.bam bam (alignments); assembly: GRCh38; genome annotation: V29 2.7 GB
ENCFF250ZFO.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 58.9 MB
ENCFF253ZEY.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 60.7 MB
ENCFF279EMZ.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 66.7 MB
ENCFF282QRU.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 66.0 MB
ENCFF285BET.bam bam (alignments); assembly: GRCh38; genome annotation: V24 2.7 GB
ENCFF290EJL.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 57.6 MB
ENCFF309BED.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 59.4 MB
ENCFF313JCV.fastq fastq (reads) 1.6 GB
ENCFF320GTE.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 70.9 MB
ENCFF328ERS.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 62.8 MB
ENCFF332BWZ.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 54.7 MB
ENCFF332XNP.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 2.8 MB
ENCFF351QJJ.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF353OKB.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF371NOW.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 64.9 MB
ENCFF395JDP.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 71.9 MB
ENCFF440VJX.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 5.4 MB
ENCFF446DMG.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 52.4 MB
ENCFF471FAW.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF489TBV.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 4.2 GB
ENCFF492RUU.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 66.7 MB
ENCFF492XIY.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF500XQY.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 64.7 MB
ENCFF517REW.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.2 MB
ENCFF523MCV.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 70.0 MB
ENCFF552OTS.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 66.0 MB
ENCFF566ILF.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 55.9 MB
ENCFF566NGP.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 65.2 MB
ENCFF579MTC.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 56.9 MB
ENCFF585OXW.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.8 MB
ENCFF589RJC.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 61.9 MB
ENCFF591YKJ.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 64.3 MB
ENCFF605MVJ.bam bam (alignments); assembly: hg19; genome annotation: V19 2.7 GB
ENCFF608LKD.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 61.0 MB
ENCFF613FIO.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 55.8 MB
ENCFF623IKY.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 57.7 MB
ENCFF629QVH.bam bam (alignments); assembly: GRCh38; genome annotation: V24 2.6 GB
ENCFF630HBS.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 59.6 MB
ENCFF655EYM.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF660NLX.bam bam (alignments); assembly: GRCh38; genome annotation: V24 2.3 GB
ENCFF705EKL.bam bam (alignments); assembly: GRCh38; genome annotation: V29 3.1 GB
ENCFF708USI.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF709JHZ.bam bam (alignments); assembly: hg19; genome annotation: V19 2.2 GB
ENCFF726OOE.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 3.7 GB
ENCFF728OLO.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 64.5 MB
ENCFF730TZT.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 59.3 MB
ENCFF732LKW.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF763VDJ.bam bam (alignments); assembly: hg19; genome annotation: V19 2.6 GB
ENCFF767DTU.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 60.9 MB
ENCFF807JYP.fastq fastq (reads) 1.5 GB
ENCFF817ERB.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF818IVI.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 58.0 MB
ENCFF839OCI.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.9 MB
ENCFF845BGZ.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF857DJH.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 50.9 MB
ENCFF869AQN.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 56.0 MB
ENCFF872ZVI.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 62.3 MB
ENCFF874IWN.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 59.5 MB
ENCFF888JIH.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 3.1 MB
ENCFF915LCA.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.3 MB
ENCFF937OBG.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 60.1 MB
ENCFF945XYL.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 71.0 MB
ENCFF946SHN.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 64.0 MB
ENCFF972IYR.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 12.9 MB
ENCFF987BKF.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCSR275JFN ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) pulldown experiment against SRSF2

11 data files
FileTypeSize
ENCFF044HZO.fastq fastq (reads) 237.3 MB
ENCFF203RCX.fastq fastq (reads) 461.9 MB
ENCFF257EQJ.tsv tsv (enrichment) 11.8 KB
ENCFF289NBX.tsv tsv (library fraction) 18.4 KB
ENCFF395BSA.fastq fastq (reads) 372.2 MB
ENCFF395YYT.tsv tsv (library fraction) 311.9 KB
ENCFF427KXG.fastq fastq (reads) 467.3 MB
ENCFF443RLZ.fastq fastq (reads) 310.6 MB
ENCFF573MYB.tsv tsv (enrichment) 196.0 KB
ENCFF616GTT.tsv tsv (library fraction) 76.1 KB
ENCFF900EPD.tsv tsv (enrichment) 48.0 KB
ENCSR313CHR ENCSR · via encode_api

shRNA knockdown against EIF4B in HepG2 cells followed by RNA-seq. (EIF4B-BGHLV12)

Homo sapiens

92 data files
FileTypeSize
ENCFF002YLP.bam bam (alignments); assembly: hg19; genome annotation: V19 5.6 GB
ENCFF015SRR.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF027SYT.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 84.5 MB
ENCFF034RDR.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 105.2 MB
ENCFF034TBY.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 106.7 MB
ENCFF066AGE.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF067JTT.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 88.7 MB
ENCFF079QXY.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 88.7 MB
ENCFF088XNA.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 106.0 MB
ENCFF094NPQ.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 92.4 MB
ENCFF099TFO.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 87.0 MB
ENCFF106ABL.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 96.1 MB
ENCFF113MYQ.fastq fastq (reads) 3.1 GB
ENCFF138UAV.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 84.9 MB
ENCFF140RHF.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 7.3 GB
ENCFF165UVA.bam bam (alignments); assembly: hg19; genome annotation: V19 4.7 GB
ENCFF181RDF.fastq fastq (reads) 3.1 GB
ENCFF195WFR.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 106.7 MB
ENCFF210BGD.bam bam (alignments); assembly: hg19; genome annotation: V19 4.7 GB
ENCFF214ZPT.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 89.3 MB
ENCFF222ALI.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF225SWE.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 90.6 MB
ENCFF228MRK.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 7.2 GB
ENCFF273KOC.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.7 GB
ENCFF280LNI.bam bam (alignments); assembly: GRCh38; genome annotation: V29 5.7 GB
ENCFF284OAQ.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 88.9 MB
ENCFF285IEY.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 80.6 MB
ENCFF291HBJ.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 6.9 GB
ENCFF296FJE.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 104.8 MB
ENCFF344IQE.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF348HTQ.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF371HBP.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 92.8 MB
ENCFF381QQH.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 98.1 MB
ENCFF388RHN.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.4 MB
ENCFF400ARN.bam bam (alignments); assembly: hg19; genome annotation: V19 5.5 GB
ENCFF419AGX.bam bam (alignments); assembly: GRCh38; genome annotation: V29 5.9 GB
ENCFF431BLH.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 96.9 MB
ENCFF435BVV.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 96.5 MB
ENCFF446HTW.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.8 MB
ENCFF454IBA.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 98.6 MB
ENCFF460DLP.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 105.2 MB
ENCFF468CJV.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 98.2 MB
ENCFF477QGB.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 89.2 MB
ENCFF501TAD.bam bam (alignments); assembly: hg19; genome annotation: V19 4.7 GB
ENCFF504CFY.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 91.2 MB
ENCFF527IMM.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 82.6 MB
ENCFF528RFZ.fastq fastq (reads) 3.1 GB
ENCFF569DOA.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 7.8 GB
ENCFF572GUK.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 3.4 MB
ENCFF577TKY.fastq fastq (reads) 3.0 GB
ENCFF583IHQ.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 88.6 MB
ENCFF597CPX.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF605FNS.bam bam (alignments); assembly: hg19; genome annotation: V19 4.6 GB
ENCFF606AVW.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF628IGB.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 97.4 MB
ENCFF644FXA.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 7.0 GB
ENCFF658XDT.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.8 GB
ENCFF659AVO.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 86.5 MB
ENCFF660QUA.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 99.6 MB
ENCFF666PHU.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 8.2 GB
ENCFF670OJY.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 89.9 MB
ENCFF671DFW.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.4 MB
ENCFF672ULY.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 94.9 MB
ENCFF691TOX.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF691ULQ.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF716JLO.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 96.2 MB
ENCFF721RJD.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF721YQT.bam bam (alignments); assembly: GRCh38; genome annotation: V24 5.7 GB
ENCFF722ILX.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 98.6 MB
ENCFF733ZHZ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 92.1 MB
ENCFF736ZQX.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 91.3 MB
ENCFF757OSV.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 3.0 MB
ENCFF778PLL.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 85.7 MB
ENCFF787HGS.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 91.1 MB
ENCFF793HYY.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 97.6 MB
ENCFF811SHN.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 90.7 MB
ENCFF815NQY.bam bam (alignments); assembly: GRCh38; genome annotation: V24 5.9 GB
ENCFF816SUR.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 4.4 MB
ENCFF844QJA.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 90.8 MB
ENCFF849CHE.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF869XKA.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 4.2 MB
ENCFF877LWC.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.9 MB
ENCFF884CSN.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 97.1 MB
ENCFF907CFI.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 94.0 MB
ENCFF917PSB.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 5.6 MB
ENCFF933EZW.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 94.3 MB
ENCFF943ZOR.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 83.8 MB
ENCFF955IBM.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 16.5 MB
ENCFF968AIR.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF975GIK.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 90.8 MB
ENCFF980VCM.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 87.4 MB
ENCFF986BFB.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 99.7 MB
ENCSR090UMI ENCSR · via encode_api

shRNA knockdown against SMN1 in HepG2 cells followed by RNA-seq. (SMN1-BGHLV20)

Homo sapiens

92 data files
FileTypeSize
ENCFF016QCV.bigWig bigWig (minus strand signal of all reads) 73.5 MB
ENCFF031DUX.tsv tsv (transcript quantifications) 27.3 MB
ENCFF040FXX.bam bam (transcriptome alignments) 6.0 GB
ENCFF040SQK.tsv tsv (gene quantifications) 10.4 MB
ENCFF051WKE.bigWig bigWig (plus strand signal of unique reads) 66.6 MB
ENCFF075ATI.tsv tsv (transcript quantifications) 29.8 MB
ENCFF076USI.bigWig bigWig (plus strand signal of all reads) 83.0 MB
ENCFF078BGM.tar tar (differential splicing quantifications) 15.4 MB
ENCFF083JFL.bigWig bigWig (minus strand signal of unique reads) 69.5 MB
ENCFF083WKP.tsv tsv (gene quantifications) 9.1 MB
ENCFF088JKG.bam bam (transcriptome alignments) 5.1 GB
ENCFF098XYJ.bigWig bigWig (plus strand signal of unique reads) 66.0 MB
ENCFF108ESR.bigWig bigWig (plus strand signal of all reads) 76.6 MB
ENCFF115FGI.bigWig bigWig (minus strand signal of all reads) 71.2 MB
ENCFF123TSK.bigWig bigWig (minus strand signal of unique reads) 64.6 MB
ENCFF127NRA.tar tar (differential splicing quantifications) 3.6 MB
ENCFF139GCC.bam bam (transcriptome alignments) 5.0 GB
ENCFF150JZE.fastq fastq (reads) 2.6 GB
ENCFF159KLH.bigWig bigWig (minus strand signal of unique reads) 63.9 MB
ENCFF171COH.bigWig bigWig (plus strand signal of all reads) 65.9 MB
ENCFF186PKZ.bigWig bigWig (plus strand signal of all reads) 73.1 MB
ENCFF209MOL.bam bam (transcriptome alignments) 6.0 GB
ENCFF233OYQ.bigWig bigWig (plus strand signal of unique reads) 60.4 MB
ENCFF269ZGN.bam bam (alignments) 4.1 GB
ENCFF316WIL.bigWig bigWig (minus strand signal of all reads) 70.6 MB
ENCFF317YSN.bigWig bigWig (minus strand signal of unique reads) 68.4 MB
ENCFF317ZBJ.bam bam (alignments) 4.9 GB
ENCFF337TQK.bigWig bigWig (minus strand signal of unique reads) 66.4 MB
ENCFF356PLN.bam bam (alignments) 4.1 GB
ENCFF365YOA.bigWig bigWig (minus strand signal of unique reads) 73.3 MB
ENCFF419JPS.bigWig bigWig (plus strand signal of all reads) 83.0 MB
ENCFF425MCX.bigWig bigWig (plus strand signal of unique reads) 68.7 MB
ENCFF442AXS.bam bam (alignments) 3.5 GB
ENCFF464UJQ.bam bam (alignments) 4.1 GB
ENCFF475JRB.tsv tsv (differential expression quantifications) 4.4 MB
ENCFF476NXJ.bigWig bigWig (minus strand signal of all reads) 62.8 MB
ENCFF476YTB.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF488FYX.bigWig bigWig (minus strand signal of unique reads) 58.5 MB
ENCFF489WVZ.bam bam (alignments) 4.0 GB
ENCFF540JXJ.fastq fastq (reads) 2.1 GB
ENCFF541VBE.bigWig bigWig (plus strand signal of unique reads) 66.5 MB
ENCFF545PHA.tsv tsv (differential expression quantifications) 5.5 MB
ENCFF552XEF.tsv tsv (transcript quantifications) 29.8 MB
ENCFF556JTA.tsv tsv (transcript quantifications) 25.3 MB
ENCFF561VLC.tsv tsv (transcript quantifications) 25.3 MB
ENCFF570CWZ.bigWig bigWig (minus strand signal of all reads) 81.2 MB
ENCFF576QGY.bam bam (alignments) 4.8 GB
ENCFF577VBV.bigWig bigWig (minus strand signal of all reads) 71.5 MB
ENCFF580LQS.tsv tsv (transcript quantifications) 27.4 MB
ENCFF586TWR.bigWig bigWig (minus strand signal of all reads) 80.3 MB
ENCFF630ZKL.bam bam (alignments) 4.1 GB
ENCFF638VVR.bigWig bigWig (minus strand signal of unique reads) 72.6 MB
ENCFF645OLE.bigWig bigWig (minus strand signal of unique reads) 61.4 MB
ENCFF649PVI.bigWig bigWig (plus strand signal of unique reads) 70.5 MB
ENCFF662XZW.bigWig bigWig (minus strand signal of all reads) 71.5 MB
ENCFF665HZS.bigWig bigWig (minus strand signal of unique reads) 72.7 MB
ENCFF671ZLG.tsv tsv (gene quantifications) 9.5 MB
ENCFF676LWQ.bigWig bigWig (minus strand signal of all reads) 65.9 MB
ENCFF683FXO.bigWig bigWig (plus strand signal of unique reads) 63.4 MB
ENCFF691LXO.bigWig bigWig (minus strand signal of all reads) 74.7 MB
ENCFF696JVQ.tsv tsv (transcript quantifications) 24.9 MB
ENCFF702FDF.bigWig bigWig (minus strand signal of unique reads) 60.9 MB
ENCFF703CHR.bigWig bigWig (plus strand signal of all reads) 72.0 MB
ENCFF703SNM.bam bam (alignments) 4.2 GB
ENCFF708FBP.bigWig bigWig (plus strand signal of unique reads) 75.6 MB
ENCFF722KVS.bigWig bigWig (plus strand signal of unique reads) 75.0 MB
ENCFF725YNY.tsv tsv (gene quantifications) 10.4 MB
ENCFF728GEF.bigWig bigWig (plus strand signal of all reads) 67.5 MB
ENCFF766SCE.tsv tsv (gene quantifications) 9.4 MB
ENCFF774WRR.bam bam (alignments) 4.9 GB
ENCFF780TJD.bigWig bigWig (plus strand signal of unique reads) 75.0 MB
ENCFF781GVZ.bigWig bigWig (minus strand signal of all reads) 81.2 MB
ENCFF781TAZ.bam bam (alignments) 3.5 GB
ENCFF789PSF.bam bam (transcriptome alignments) 6.7 GB
ENCFF797SFC.bigWig bigWig (plus strand signal of all reads) 64.4 MB
ENCFF804JNK.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF808LTK.fastq fastq (reads) 2.7 GB
ENCFF809GHI.bigWig bigWig (plus strand signal of unique reads) 71.8 MB
ENCFF821DXT.bigWig bigWig (plus strand signal of all reads) 75.1 MB
ENCFF825WPM.bigWig bigWig (plus strand signal of all reads) 73.0 MB
ENCFF831DQP.bigWig bigWig (plus strand signal of all reads) 82.0 MB
ENCFF865UVU.bam bam (transcriptome alignments) 5.6 GB
ENCFF902WTF.bigWig bigWig (plus strand signal of all reads) 73.0 MB
ENCFF914XJD.tsv tsv (gene quantifications) 9.1 MB
ENCFF921ZKK.bigWig bigWig (minus strand signal of all reads) 64.5 MB
ENCFF927OEA.fastq fastq (reads) 2.3 GB
ENCFF934OAE.bigWig bigWig (minus strand signal of unique reads) 64.5 MB
ENCFF944KFT.tsv tsv (differential expression quantifications) 3.0 MB
ENCFF958QFY.tsv tsv (transcript quantifications) 24.9 MB
ENCFF959MHO.bam bam (alignments) 3.5 GB
ENCFF982ANU.bigWig bigWig (plus strand signal of unique reads) 62.7 MB
ENCFF996XKP.tar tar (differential splicing quantifications) 3.0 MB
ENCSR964YTW ENCSR · via encode_api

shRNA knockdown against DDX55 in HepG2 cells followed by RNA-seq. (DDX55_BGHLV17)

Homo sapiens

88 data files
FileTypeSize
ENCFF007QVZ.bigWig bigWig (plus strand signal of unique reads) 84.0 MB
ENCFF010NDG.bigWig bigWig (minus strand signal of unique reads) 78.2 MB
ENCFF010WWH.bigWig bigWig (minus strand signal of unique reads) 81.8 MB
ENCFF029ZGL.fastq fastq (reads) 3.3 GB
ENCFF031FUU.bigWig bigWig (minus strand signal of unique reads) 91.7 MB
ENCFF038OKZ.bigWig bigWig (plus strand signal of all reads) 89.2 MB
ENCFF042KHN.tsv tsv (transcript quantifications) 29.8 MB
ENCFF043ZUP.tsv tsv (transcript quantifications) 25.3 MB
ENCFF044BII.bigWig bigWig (minus strand signal of all reads) 82.8 MB
ENCFF049FGN.bigWig bigWig (plus strand signal of unique reads) 88.4 MB
ENCFF052JQY.tsv tsv (transcript quantifications) 24.9 MB
ENCFF063MCE.bigWig bigWig (plus strand signal of all reads) 87.5 MB
ENCFF064BAO.tsv tsv (differential expression quantifications) 2.0 MB
ENCFF065GCS.tsv tsv (transcript quantifications) 25.3 MB
ENCFF067TCM.fastq fastq (reads) 3.2 GB
ENCFF076AFB.bam bam (alignments) 6.4 GB
ENCFF081LTC.tsv tsv (transcript quantifications) 27.5 MB
ENCFF118LDT.bigWig bigWig (minus strand signal of all reads) 89.3 MB
ENCFF120XQA.bigWig bigWig (plus strand signal of all reads) 103.8 MB
ENCFF154BVU.bigWig bigWig (plus strand signal of all reads) 95.1 MB
ENCFF167TZL.tar tar (differential splicing quantifications) 3.5 MB
ENCFF174NJV.bigWig bigWig (plus strand signal of unique reads) 94.4 MB
ENCFF181UBU.bam bam (alignments) 5.9 GB
ENCFF193SMU.bam bam (alignments) 5.9 GB
ENCFF214RYM.bigWig bigWig (plus strand signal of unique reads) 87.7 MB
ENCFF232DRF.bam bam (transcriptome alignments) 6.8 GB
ENCFF266JFK.tsv tsv (differential expression quantifications) 4.3 MB
ENCFF323VWD.tsv tsv (gene quantifications) 9.4 MB
ENCFF355ZEQ.tsv tsv (differential expression quantifications) 3.0 MB
ENCFF366SEU.bigWig bigWig (minus strand signal of all reads) 93.1 MB
ENCFF367OFI.bigWig bigWig (plus strand signal of all reads) 84.5 MB
ENCFF375ACE.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF380VIC.bigWig bigWig (minus strand signal of all reads) 87.5 MB
ENCFF392CJL.bigWig bigWig (plus strand signal of unique reads) 80.4 MB
ENCFF399ZSF.bigWig bigWig (minus strand signal of all reads) 101.9 MB
ENCFF410VPN.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF422PSR.tsv tsv (gene quantifications) 9.4 MB
ENCFF432VQT.bam bam (transcriptome alignments) 7.3 GB
ENCFF439GLM.bam bam (alignments) 6.4 GB
ENCFF477GTP.bigWig bigWig (minus strand signal of all reads) 102.0 MB
ENCFF498MWH.bigWig bigWig (plus strand signal of unique reads) 88.9 MB
ENCFF499VSG.tar tar (differential splicing quantifications) 16.3 MB
ENCFF505RYC.tsv tsv (transcript quantifications) 27.4 MB
ENCFF526GJF.bam bam (transcriptome alignments) 7.2 GB
ENCFF529XMZ.bigWig bigWig (minus strand signal of unique reads) 86.1 MB
ENCFF536VWO.bigWig bigWig (minus strand signal of all reads) 86.2 MB
ENCFF555ODJ.bam bam (transcriptome alignments) 8.1 GB
ENCFF564SDT.tsv tsv (transcript quantifications) 29.8 MB
ENCFF568TJO.bigWig bigWig (plus strand signal of unique reads) 82.3 MB
ENCFF584HLK.fastq fastq (reads) 3.0 GB
ENCFF610FEP.bigWig bigWig (minus strand signal of all reads) 102.0 MB
ENCFF611HXK.tsv tsv (gene quantifications) 10.4 MB
ENCFF618APB.bam bam (alignments) 5.9 GB
ENCFF626DNM.bigWig bigWig (plus strand signal of all reads) 103.9 MB
ENCFF626TMH.bigWig bigWig (minus strand signal of unique reads) 83.1 MB
ENCFF631HUT.bigWig bigWig (minus strand signal of unique reads) 92.2 MB
ENCFF636XYY.bigWig bigWig (minus strand signal of all reads) 96.0 MB
ENCFF638KQK.bigWig bigWig (plus strand signal of all reads) 97.8 MB
ENCFF641AJZ.bigWig bigWig (minus strand signal of all reads) 96.3 MB
ENCFF651AXR.tar tar (differential splicing quantifications) 4.3 MB
ENCFF677YCE.bigWig bigWig (minus strand signal of unique reads) 86.6 MB
ENCFF681TCO.bigWig bigWig (minus strand signal of unique reads) 86.0 MB
ENCFF688DNF.tsv tsv (gene quantifications) 9.1 MB
ENCFF688NPM.bam bam (transcriptome alignments) 7.6 GB
ENCFF710EWQ.bigWig bigWig (minus strand signal of unique reads) 85.4 MB
ENCFF737VKB.bigWig bigWig (plus strand signal of all reads) 97.5 MB
ENCFF764BTL.bigWig bigWig (plus strand signal of unique reads) 85.6 MB
ENCFF772TFS.bam bam (alignments) 5.3 GB
ENCFF788OVB.bigWig bigWig (minus strand signal of all reads) 91.3 MB
ENCFF799DYJ.bam bam (alignments) 4.8 GB
ENCFF829HTB.bigWig bigWig (minus strand signal of unique reads) 80.3 MB
ENCFF831GBF.bigWig bigWig (plus strand signal of all reads) 103.9 MB
ENCFF850GRH.bam bam (alignments) 5.1 GB
ENCFF865QZH.bam bam (alignments) 4.7 GB
ENCFF867MZR.fastq fastq (reads) 3.1 GB
ENCFF872CVT.bigWig bigWig (plus strand signal of unique reads) 88.6 MB
ENCFF876ECR.bam bam (alignments) 5.5 GB
ENCFF877RFJ.bigWig bigWig (plus strand signal of unique reads) 93.9 MB
ENCFF897MKF.bam bam (transcriptome alignments) 6.8 GB
ENCFF906EJF.bam bam (alignments) 4.9 GB
ENCFF911KXD.bigWig bigWig (minus strand signal of unique reads) 91.3 MB
ENCFF931GZO.bigWig bigWig (plus strand signal of all reads) 91.4 MB
ENCFF934HHF.tsv tsv (gene quantifications) 10.4 MB
ENCFF935XLF.bam bam (alignments) 5.1 GB
ENCFF946DGA.tsv tsv (gene quantifications) 9.1 MB
ENCFF950NPG.tsv tsv (transcript quantifications) 24.9 MB
ENCFF994XHB.bigWig bigWig (plus strand signal of all reads) 92.9 MB
ENCFF995AER.bigWig bigWig (plus strand signal of unique reads) 94.9 MB
ENCSR748EXO ENCSR · via encode_api

Control ChIP-seq on HepG2

Homo sapiens

14 data files
FileTypeSize
ENCFF136DUC.bam bam (unfiltered alignments) 1.9 GB
ENCFF163JPJ.bam bam (unfiltered alignments) 2.4 GB
ENCFF194FGZ.bam bam (unfiltered alignments) 2.4 GB
ENCFF289MCV.bam bam (unfiltered alignments) 2.5 GB
ENCFF395UUL.bam bam (alignments) 1.5 GB
ENCFF510GFY.bam bam (unfiltered alignments) 1.9 GB
ENCFF526TGW.fastq fastq (reads) 1.7 GB
ENCFF558MII.bam bam (unfiltered alignments) 1.9 GB
ENCFF580VRU.bam bam (alignments) 1.4 GB
ENCFF659EXP.bam bam (alignments) 1.8 GB
ENCFF788XUJ.bam bam (alignments) 1.9 GB
ENCFF872JOE.bam bam (alignments) 1.4 GB
ENCFF883CMB.fastq fastq (reads) 1.3 GB
ENCFF951UMF.bam bam (alignments) 1.8 GB
ENCSR896MMU ENCSR · via encode_api

RNA-seq on HepG2 cells treated with an shRNA knockdown against MSI2. (MSI2_BGHLV30)

Homo sapiens

92 data files
FileTypeSize
ENCFF004CAV.tsv tsv (gene quantifications) 9.5 MB
ENCFF021RND.tsv tsv (differential expression quantifications) 5.5 MB
ENCFF023NZO.bigWig bigWig (minus strand signal of unique reads) 77.8 MB
ENCFF028CRL.tsv tsv (gene quantifications) 9.5 MB
ENCFF031CLM.tar tar (differential splicing quantifications) 4.0 MB
ENCFF040NOA.bigWig bigWig (plus strand signal of unique reads) 91.3 MB
ENCFF041RFS.tsv tsv (transcript quantifications) 27.5 MB
ENCFF047CXM.bigWig bigWig (minus strand signal of all reads) 75.0 MB
ENCFF068IBF.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF089BJE.tsv tsv (transcript quantifications) 27.4 MB
ENCFF100MGI.bam bam (alignments) 4.7 GB
ENCFF120XWF.bigWig bigWig (minus strand signal of unique reads) 78.8 MB
ENCFF138AKE.bam bam (alignments) 7.0 GB
ENCFF138JEV.tsv tsv (gene quantifications) 10.4 MB
ENCFF143KLH.fastq fastq (reads) 3.8 GB
ENCFF145DIH.tsv tsv (transcript quantifications) 25.3 MB
ENCFF146MOY.bam bam (transcriptome alignments) 8.2 GB
ENCFF177CKM.fastq fastq (reads) 3.8 GB
ENCFF178GJO.bigWig bigWig (plus strand signal of unique reads) 81.9 MB
ENCFF188LWW.bigWig bigWig (minus strand signal of unique reads) 82.2 MB
ENCFF233EWC.bigWig bigWig (minus strand signal of all reads) 86.9 MB
ENCFF235MCH.bigWig bigWig (plus strand signal of unique reads) 91.3 MB
ENCFF238CPO.tar tar (differential splicing quantifications) 15.8 MB
ENCFF267OXD.bigWig bigWig (plus strand signal of all reads) 80.8 MB
ENCFF279PPD.bigWig bigWig (plus strand signal of all reads) 101.4 MB
ENCFF286MSQ.bigWig bigWig (plus strand signal of all reads) 89.1 MB
ENCFF291QXA.bigWig bigWig (plus strand signal of unique reads) 91.3 MB
ENCFF293PTK.bigWig bigWig (plus strand signal of unique reads) 74.5 MB
ENCFF306PRN.bam bam (alignments) 6.8 GB
ENCFF319HBA.bigWig bigWig (minus strand signal of unique reads) 77.5 MB
ENCFF331NNM.bigWig bigWig (plus strand signal of unique reads) 74.9 MB
ENCFF333RMB.bigWig bigWig (minus strand signal of all reads) 99.0 MB
ENCFF355FWR.bigWig bigWig (plus strand signal of unique reads) 85.1 MB
ENCFF368DPO.bam bam (alignments) 7.0 GB
ENCFF370OND.bigWig bigWig (plus strand signal of all reads) 91.2 MB
ENCFF370TXQ.tsv tsv (transcript quantifications) 29.8 MB
ENCFF384WKD.bigWig bigWig (minus strand signal of unique reads) 69.6 MB
ENCFF388CBV.bam bam (alignments) 5.8 GB
ENCFF397OLJ.bigWig bigWig (plus strand signal of all reads) 89.1 MB
ENCFF411SGM.bigWig bigWig (plus strand signal of unique reads) 80.4 MB
ENCFF418JGX.bam bam (alignments) 4.8 GB
ENCFF443MLF.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF459TOG.bam bam (alignments) 5.9 GB
ENCFF471OFS.bigWig bigWig (plus strand signal of unique reads) 83.4 MB
ENCFF477CTJ.tsv tsv (transcript quantifications) 29.8 MB
ENCFF480QBK.tsv tsv (transcript quantifications) 24.9 MB
ENCFF484LTR.bam bam (transcriptome alignments) 6.6 GB
ENCFF506NLS.bigWig bigWig (minus strand signal of all reads) 99.0 MB
ENCFF520MIT.bam bam (alignments) 5.7 GB
ENCFF573CYS.bigWig bigWig (minus strand signal of all reads) 78.7 MB
ENCFF577TQN.bigWig bigWig (plus strand signal of unique reads) 80.2 MB
ENCFF588NII.tsv tsv (transcript quantifications) 24.9 MB
ENCFF589RAL.bigWig bigWig (plus strand signal of all reads) 101.4 MB
ENCFF589VLD.bigWig bigWig (minus strand signal of unique reads) 88.2 MB
ENCFF594UTN.fastq fastq (reads) 3.1 GB
ENCFF596RCX.tsv tsv (transcript quantifications) 25.3 MB
ENCFF600ERV.bam bam (alignments) 5.7 GB
ENCFF600PKU.bigWig bigWig (minus strand signal of all reads) 85.6 MB
ENCFF607RYO.bigWig bigWig (minus strand signal of unique reads) 72.1 MB
ENCFF615EMI.tsv tsv (differential expression quantifications) 4.3 MB
ENCFF615VSA.bam bam (transcriptome alignments) 9.2 GB
ENCFF616VEU.bam bam (transcriptome alignments) 6.6 GB
ENCFF619ELD.bigWig bigWig (minus strand signal of all reads) 97.4 MB
ENCFF630VSN.tar tar (differential splicing quantifications) 3.4 MB
ENCFF651SPY.bigWig bigWig (minus strand signal of unique reads) 80.7 MB
ENCFF658PEC.bigWig bigWig (minus strand signal of all reads) 87.3 MB
ENCFF658XTH.bigWig bigWig (plus strand signal of unique reads) 72.3 MB
ENCFF708SAL.fastq fastq (reads) 3.1 GB
ENCFF719AET.bigWig bigWig (minus strand signal of unique reads) 88.2 MB
ENCFF759LFY.bigWig bigWig (plus strand signal of all reads) 89.4 MB
ENCFF761HJL.tsv tsv (gene quantifications) 9.1 MB
ENCFF774HFG.bigWig bigWig (plus strand signal of all reads) 88.0 MB
ENCFF797MME.bigWig bigWig (minus strand signal of all reads) 88.8 MB
ENCFF807YAQ.bigWig bigWig (minus strand signal of all reads) 76.6 MB
ENCFF815MPO.tsv tsv (gene quantifications) 10.4 MB
ENCFF855GGL.bigWig bigWig (plus strand signal of all reads) 78.6 MB
ENCFF856EJT.bigWig bigWig (plus strand signal of all reads) 89.4 MB
ENCFF861FQK.tsv tsv (gene quantifications) 9.1 MB
ENCFF866EEZ.bigWig bigWig (minus strand signal of all reads) 87.1 MB
ENCFF878DWG.bam bam (alignments) 5.8 GB
ENCFF899MSF.bigWig bigWig (plus strand signal of all reads) 77.1 MB
ENCFF906NIW.bigWig bigWig (minus strand signal of unique reads) 72.3 MB
ENCFF915LIM.bam bam (alignments) 5.5 GB
ENCFF918RHE.bigWig bigWig (plus strand signal of all reads) 99.6 MB
ENCFF932BOB.bam bam (alignments) 4.7 GB
ENCFF946QEW.bigWig bigWig (plus strand signal of unique reads) 80.2 MB
ENCFF949JHU.bigWig bigWig (minus strand signal of all reads) 87.3 MB
ENCFF955VPI.tsv tsv (differential expression quantifications) 2.0 MB
ENCFF980ATN.bigWig bigWig (minus strand signal of unique reads) 88.2 MB
ENCFF987PVD.bigWig bigWig (minus strand signal of unique reads) 77.5 MB
ENCFF988UXN.bam bam (transcriptome alignments) 7.5 GB
ENCFF992HLU.bam bam (transcriptome alignments) 8.1 GB
ENCSR388VKV ENCSR · via encode_api

eCLIP control experiment on HepG2 against SMNDC1

Homo sapiens

8 data files
FileTypeSize
ENCFF040CHT.fastq fastq (reads) 507.2 MB
ENCFF232TXN.bigWig bigWig (plus strand signal of unique reads) 16.6 MB
ENCFF263MRM.bam bam (alignments) 371.2 MB
ENCFF410TUD.bam bam (alignments) 367.2 MB
ENCFF723YJC.bigWig bigWig (plus strand signal of unique reads) 16.4 MB
ENCFF740IJH.bigWig bigWig (minus strand signal of unique reads) 16.3 MB
ENCFF966FGF.bigWig bigWig (minus strand signal of unique reads) 16.1 MB
ENCFF993KFQ.fastq fastq (reads) 464.2 MB
ENCSR152MON ENCSR · via encode_api

RNA-seq on HepG2 cells treated with an shRNA knockdown against EIF4G2. (EIF4G2-BGHLV23)

Homo sapiens

92 data files
FileTypeSize
ENCFF012JCP.bigWig bigWig (plus strand signal of unique reads) 70.8 MB
ENCFF014YQQ.bigWig bigWig (minus strand signal of all reads) 87.9 MB
ENCFF025UXM.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF028ZEH.bam bam (alignments) 5.6 GB
ENCFF037SKI.bigWig bigWig (plus strand signal of unique reads) 70.8 MB
ENCFF050JOM.tsv tsv (transcript quantifications) 27.3 MB
ENCFF051VEG.bigWig bigWig (plus strand signal of all reads) 80.7 MB
ENCFF070JVI.bam bam (alignments) 4.8 GB
ENCFF072TSB.tsv tsv (differential expression quantifications) 4.4 MB
ENCFF096CGK.tsv tsv (gene quantifications) 10.4 MB
ENCFF096ZNN.bigWig bigWig (minus strand signal of unique reads) 77.4 MB
ENCFF099HLJ.bigWig bigWig (plus strand signal of unique reads) 75.3 MB
ENCFF116RGI.bigWig bigWig (plus strand signal of all reads) 89.4 MB
ENCFF125SRX.bam bam (alignments) 4.8 GB
ENCFF127BCD.bigWig bigWig (minus strand signal of unique reads) 68.9 MB
ENCFF130JZH.bam bam (alignments) 4.8 GB
ENCFF131UOO.bam bam (alignments) 5.4 GB
ENCFF137TXG.fastq fastq (reads) 3.0 GB
ENCFF139XXU.bigWig bigWig (minus strand signal of unique reads) 78.0 MB
ENCFF144VBQ.bigWig bigWig (plus strand signal of all reads) 78.1 MB
ENCFF160HWS.bigWig bigWig (plus strand signal of unique reads) 79.4 MB
ENCFF171PND.bigWig bigWig (minus strand signal of unique reads) 69.0 MB
ENCFF182PVS.bigWig bigWig (minus strand signal of unique reads) 65.3 MB
ENCFF188REA.bigWig bigWig (plus strand signal of unique reads) 75.0 MB
ENCFF194VKI.bam bam (transcriptome alignments) 7.8 GB
ENCFF204VID.bam bam (transcriptome alignments) 7.1 GB
ENCFF218XUH.bigWig bigWig (plus strand signal of all reads) 71.3 MB
ENCFF227KAW.bigWig bigWig (plus strand signal of unique reads) 67.1 MB
ENCFF227NNI.bigWig bigWig (minus strand signal of unique reads) 73.4 MB
ENCFF229CUL.bam bam (alignments) 5.9 GB
ENCFF239VCA.bigWig bigWig (minus strand signal of all reads) 67.8 MB
ENCFF244MTR.bigWig bigWig (plus strand signal of unique reads) 66.0 MB
ENCFF253AAI.bam bam (transcriptome alignments) 7.0 GB
ENCFF254ISN.bam bam (alignments) 5.7 GB
ENCFF258TXP.tsv tsv (transcript quantifications) 29.8 MB
ENCFF263QBZ.bigWig bigWig (plus strand signal of all reads) 87.2 MB
ENCFF319PKX.bigWig bigWig (plus strand signal of all reads) 69.9 MB
ENCFF327YGZ.bam bam (transcriptome alignments) 7.1 GB
ENCFF328FLL.bigWig bigWig (minus strand signal of unique reads) 78.6 MB
ENCFF334IYC.bam bam (alignments) 5.7 GB
ENCFF338KYO.bigWig bigWig (plus strand signal of unique reads) 65.4 MB
ENCFF356BCE.bigWig bigWig (minus strand signal of all reads) 76.7 MB
ENCFF365UWO.bigWig bigWig (minus strand signal of unique reads) 69.5 MB
ENCFF366DCV.bigWig bigWig (plus strand signal of all reads) 78.1 MB
ENCFF384ACJ.tsv tsv (gene quantifications) 9.1 MB
ENCFF403JVC.bigWig bigWig (minus strand signal of all reads) 85.9 MB
ENCFF430HHU.bam bam (transcriptome alignments) 7.8 GB
ENCFF447GMM.bigWig bigWig (plus strand signal of unique reads) 73.1 MB
ENCFF456XWE.bigWig bigWig (minus strand signal of unique reads) 64.4 MB
ENCFF460SLH.bam bam (alignments) 4.7 GB
ENCFF462ICJ.bigWig bigWig (minus strand signal of all reads) 69.9 MB
ENCFF474TVW.tsv tsv (gene quantifications) 10.4 MB
ENCFF503FMW.tar tar (differential splicing quantifications) 17.4 MB
ENCFF505LBM.bigWig bigWig (minus strand signal of all reads) 76.6 MB
ENCFF506RQT.fastq fastq (reads) 3.0 GB
ENCFF515SNE.fastq fastq (reads) 2.9 GB
ENCFF527PQX.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF535OTZ.bigWig bigWig (minus strand signal of all reads) 68.6 MB
ENCFF556BBO.bigWig bigWig (minus strand signal of unique reads) 73.2 MB
ENCFF562FMY.tsv tsv (transcript quantifications) 25.3 MB
ENCFF569FFL.tsv tsv (gene quantifications) 9.5 MB
ENCFF622ORW.bigWig bigWig (plus strand signal of all reads) 78.2 MB
ENCFF628VFK.bigWig bigWig (minus strand signal of all reads) 79.2 MB
ENCFF629VSC.tsv tsv (gene quantifications) 9.1 MB
ENCFF631CFD.bam bam (alignments) 5.9 GB
ENCFF640QGL.bigWig bigWig (minus strand signal of all reads) 76.7 MB
ENCFF650TIT.tsv tsv (transcript quantifications) 27.4 MB
ENCFF661SAF.bigWig bigWig (plus strand signal of all reads) 69.5 MB
ENCFF663JQQ.bigWig bigWig (plus strand signal of all reads) 89.4 MB
ENCFF680YQZ.bam bam (transcriptome alignments) 7.0 GB
ENCFF703IEH.tar tar (differential splicing quantifications) 4.4 MB
ENCFF715NFF.tsv tsv (transcript quantifications) 24.9 MB
ENCFF723TPD.bam bam (alignments) 4.7 GB
ENCFF730FIG.tsv tsv (transcript quantifications) 29.8 MB
ENCFF750WBN.bigWig bigWig (minus strand signal of all reads) 77.9 MB
ENCFF765UCN.fastq fastq (reads) 3.1 GB
ENCFF788QXM.bam bam (alignments) 5.0 GB
ENCFF803SMD.bigWig bigWig (minus strand signal of all reads) 87.9 MB
ENCFF837UIF.bigWig bigWig (minus strand signal of all reads) 76.4 MB
ENCFF842HJZ.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF846VJJ.bigWig bigWig (plus strand signal of unique reads) 71.3 MB
ENCFF847FOB.bigWig bigWig (minus strand signal of unique reads) 63.4 MB
ENCFF849YAG.bigWig bigWig (minus strand signal of unique reads) 71.0 MB
ENCFF877ESJ.tar tar (differential splicing quantifications) 3.4 MB
ENCFF884KDO.tsv tsv (gene quantifications) 9.5 MB
ENCFF903JAR.tsv tsv (transcript quantifications) 24.9 MB
ENCFF931YSK.bigWig bigWig (plus strand signal of unique reads) 80.0 MB
ENCFF932LWC.bigWig bigWig (plus strand signal of all reads) 79.3 MB
ENCFF936EZQ.bigWig bigWig (plus strand signal of all reads) 77.6 MB
ENCFF954OVV.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF987HQV.bigWig bigWig (plus strand signal of unique reads) 80.7 MB
ENCFF992JXS.tsv tsv (transcript quantifications) 25.3 MB
ENCSR366FFV ENCSR · via encode_api

shRNA knockdown against ILF2 in HepG2 cells followed by RNA-seq. (ILF2-BGHLV20)

Homo sapiens

92 data files
FileTypeSize
ENCFF019APO.tsv tsv (transcript quantifications) 25.3 MB
ENCFF045GMV.bigWig bigWig (minus strand signal of unique reads) 63.3 MB
ENCFF064FLU.bam bam (alignments) 3.4 GB
ENCFF065OLY.bam bam (transcriptome alignments) 4.9 GB
ENCFF090ZOP.bigWig bigWig (minus strand signal of unique reads) 64.1 MB
ENCFF095RDV.bigWig bigWig (plus strand signal of unique reads) 65.9 MB
ENCFF098ZFK.bigWig bigWig (plus strand signal of all reads) 89.2 MB
ENCFF112TSS.bigWig bigWig (minus strand signal of unique reads) 64.1 MB
ENCFF113TRD.bigWig bigWig (minus strand signal of all reads) 89.3 MB
ENCFF129HHM.tsv tsv (transcript quantifications) 27.3 MB
ENCFF130SMY.bigWig bigWig (plus strand signal of unique reads) 61.0 MB
ENCFF135ULL.bigWig bigWig (plus strand signal of all reads) 90.7 MB
ENCFF135XTV.bigWig bigWig (plus strand signal of unique reads) 75.6 MB
ENCFF136CPG.bigWig bigWig (plus strand signal of all reads) 72.8 MB
ENCFF145CNJ.tsv tsv (gene quantifications) 10.4 MB
ENCFF149PBQ.bigWig bigWig (plus strand signal of all reads) 66.0 MB
ENCFF150WUU.bam bam (alignments) 5.9 GB
ENCFF157XBJ.bam bam (alignments) 5.1 GB
ENCFF158HBY.bigWig bigWig (plus strand signal of all reads) 80.8 MB
ENCFF178WCY.bigWig bigWig (minus strand signal of unique reads) 59.1 MB
ENCFF184EWI.fastq fastq (reads) 2.2 GB
ENCFF186JML.bigWig bigWig (plus strand signal of all reads) 62.3 MB
ENCFF193CZC.fastq fastq (reads) 2.1 GB
ENCFF197HXP.bigWig bigWig (plus strand signal of all reads) 82.0 MB
ENCFF209HQW.tsv tsv (transcript quantifications) 25.3 MB
ENCFF210NRG.bigWig bigWig (minus strand signal of unique reads) 79.3 MB
ENCFF213VZI.tar tar (differential splicing quantifications) 15.4 MB
ENCFF217PVS.bigWig bigWig (plus strand signal of all reads) 78.5 MB
ENCFF220MWM.bam bam (alignments) 4.1 GB
ENCFF229VRE.tsv tsv (differential expression quantifications) 5.5 MB
ENCFF233XYW.tsv tsv (transcript quantifications) 29.8 MB
ENCFF254IUE.tsv tsv (transcript quantifications) 29.8 MB
ENCFF261RPK.bam bam (transcriptome alignments) 8.2 GB
ENCFF263BVF.tar tar (differential splicing quantifications) 3.0 MB
ENCFF272JXX.fastq fastq (reads) 3.4 GB
ENCFF286KWM.bigWig bigWig (minus strand signal of all reads) 61.0 MB
ENCFF288YUG.bigWig bigWig (minus strand signal of all reads) 79.5 MB
ENCFF293JKL.bam bam (alignments) 5.2 GB
ENCFF295OQX.bigWig bigWig (minus strand signal of all reads) 70.3 MB
ENCFF306UDO.bigWig bigWig (minus strand signal of all reads) 77.0 MB
ENCFF340DKA.bigWig bigWig (plus strand signal of all reads) 90.7 MB
ENCFF341KQV.bam bam (transcriptome alignments) 5.4 GB
ENCFF353MDI.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF365PPN.tsv tsv (differential expression quantifications) 4.3 MB
ENCFF391CBE.bigWig bigWig (plus strand signal of unique reads) 59.0 MB
ENCFF401WDB.bam bam (alignments) 3.5 GB
ENCFF448ZTD.bigWig bigWig (minus strand signal of unique reads) 79.8 MB
ENCFF462EPD.bigWig bigWig (minus strand signal of all reads) 80.5 MB
ENCFF465JCM.bigWig bigWig (minus strand signal of unique reads) 75.4 MB
ENCFF479ANR.bigWig bigWig (minus strand signal of unique reads) 72.6 MB
ENCFF496TLV.bam bam (alignments) 6.1 GB
ENCFF521KKA.tsv tsv (gene quantifications) 9.5 MB
ENCFF532JUU.bigWig bigWig (plus strand signal of unique reads) 81.7 MB
ENCFF533PHD.bigWig bigWig (minus strand signal of all reads) 64.7 MB
ENCFF547EPS.bigWig bigWig (minus strand signal of unique reads) 59.4 MB
ENCFF550FLO.bigWig bigWig (minus strand signal of unique reads) 79.7 MB
ENCFF561XSL.bigWig bigWig (plus strand signal of unique reads) 81.7 MB
ENCFF563RYH.bam bam (transcriptome alignments) 7.4 GB
ENCFF599YZE.bam bam (alignments) 5.1 GB
ENCFF650HWW.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF662PUY.bigWig bigWig (minus strand signal of all reads) 71.5 MB
ENCFF682NRT.bigWig bigWig (minus strand signal of all reads) 71.5 MB
ENCFF689AGV.bam bam (alignments) 6.1 GB
ENCFF707TPW.bam bam (transcriptome alignments) 7.4 GB
ENCFF708ASF.tsv tsv (transcript quantifications) 24.9 MB
ENCFF713QFI.bigWig bigWig (minus strand signal of all reads) 89.3 MB
ENCFF713TBW.bigWig bigWig (minus strand signal of unique reads) 57.2 MB
ENCFF713WTY.bigWig bigWig (plus strand signal of all reads) 72.7 MB
ENCFF717QSB.bigWig bigWig (plus strand signal of unique reads) 65.0 MB
ENCFF719QWW.tsv tsv (gene quantifications) 9.4 MB
ENCFF737UCO.bigWig bigWig (plus strand signal of unique reads) 60.6 MB
ENCFF746ELO.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF748RIH.bigWig bigWig (plus strand signal of unique reads) 74.7 MB
ENCFF765EPD.bigWig bigWig (plus strand signal of all reads) 64.1 MB
ENCFF773HPG.bigWig bigWig (minus strand signal of unique reads) 73.9 MB
ENCFF781CHF.bigWig bigWig (minus strand signal of all reads) 88.0 MB
ENCFF803JGU.tsv tsv (gene quantifications) 9.1 MB
ENCFF824UBU.bam bam (alignments) 4.1 GB
ENCFF834ZOD.tsv tsv (transcript quantifications) 24.9 MB
ENCFF835EFU.bam bam (transcriptome alignments) 4.9 GB
ENCFF839VYR.tsv tsv (gene quantifications) 9.1 MB
ENCFF851RGA.fastq fastq (reads) 3.2 GB
ENCFF886MQA.bam bam (alignments) 4.0 GB
ENCFF905XND.bigWig bigWig (plus strand signal of unique reads) 77.3 MB
ENCFF907KJZ.tsv tsv (gene quantifications) 10.4 MB
ENCFF907YWH.bigWig bigWig (plus strand signal of unique reads) 81.2 MB
ENCFF917UGH.bigWig bigWig (plus strand signal of unique reads) 65.8 MB
ENCFF943PEC.bam bam (alignments) 3.4 GB
ENCFF985HDX.bigWig bigWig (minus strand signal of all reads) 63.0 MB
ENCFF990SDF.bigWig bigWig (plus strand signal of all reads) 71.4 MB
ENCFF993KCP.tar tar (differential splicing quantifications) 3.6 MB
ENCFF993SJB.tsv tsv (transcript quantifications) 27.3 MB
ENCSR527IVX ENCSR · via encode_api

shRNA knockdown against PTBP1 in K562 cells followed by RNA-seq. (PTBP1-LV11)

Homo sapiens

92 data files
FileTypeSize
ENCFF006ZOW.bam bam (alignments); assembly: GRCh38; genome annotation: V29 4.2 GB
ENCFF014ZZU.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 84.0 MB
ENCFF015RWL.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.3 GB
ENCFF042QJZ.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 100.6 MB
ENCFF043RBG.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 116.2 MB
ENCFF053OLU.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 113.2 MB
ENCFF059CPD.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 100.6 MB
ENCFF061DFK.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 3.8 MB
ENCFF075OME.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF079OKR.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 4.4 GB
ENCFF092RDT.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 89.4 MB
ENCFF096XGH.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 91.0 MB
ENCFF111PJG.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 114.8 MB
ENCFF124IHF.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 89.7 MB
ENCFF127AOK.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 90.2 MB
ENCFF163QDL.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 94.5 MB
ENCFF184CDV.fastq fastq (reads) 2.2 GB
ENCFF214FQS.bam bam (alignments); assembly: hg19; genome annotation: V19 3.1 GB
ENCFF224TEK.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 103.7 MB
ENCFF233XQJ.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 98.6 MB
ENCFF254SFY.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 114.7 MB
ENCFF254SUF.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF257RPN.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 101.0 MB
ENCFF275KND.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 5.4 MB
ENCFF284EZP.bam bam (alignments); assembly: hg19; genome annotation: V19 3.2 GB
ENCFF288SZI.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 110.2 MB
ENCFF313YYR.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 92.6 MB
ENCFF316AAS.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 4.5 MB
ENCFF326ULC.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 111.8 MB
ENCFF334ZEN.bam bam (alignments); assembly: hg19; genome annotation: V19 3.0 GB
ENCFF336ZAF.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 4.2 GB
ENCFF341MLZ.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 95.6 MB
ENCFF368HPE.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 4.3 GB
ENCFF371ODR.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF381VBS.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 111.6 MB
ENCFF388NSB.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 97.6 MB
ENCFF393VGO.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 97.9 MB
ENCFF406ORF.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.4 MB
ENCFF408UXO.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 89.1 MB
ENCFF409VYU.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 99.3 MB
ENCFF415ZFK.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 96.8 MB
ENCFF436ENV.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 113.2 MB
ENCFF436JMY.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.1 GB
ENCFF440NZS.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 5.3 GB
ENCFF442BTC.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF445DTZ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 92.3 MB
ENCFF456OPJ.fastq fastq (reads) 2.2 GB
ENCFF469ZAP.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.0 MB
ENCFF487HDO.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.2 GB
ENCFF516MXA.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 114.5 MB
ENCFF517EWW.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 81.8 MB
ENCFF521RBT.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 4.5 GB
ENCFF522IDE.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 100.9 MB
ENCFF527QYI.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 103.7 MB
ENCFF530HMC.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 96.9 MB
ENCFF544GMW.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 97.9 MB
ENCFF556DIN.bam bam (alignments); assembly: GRCh38; genome annotation: V29 4.3 GB
ENCFF569TVK.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.7 MB
ENCFF573OXM.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 3.0 MB
ENCFF587JQA.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 116.2 MB
ENCFF591TUJ.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.4 MB
ENCFF599LZO.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 111.8 MB
ENCFF642KBO.fastq fastq (reads) 2.1 GB
ENCFF647FYA.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.5 MB
ENCFF660QHW.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF662KKR.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 99.5 MB
ENCFF681DPU.bam bam (alignments); assembly: hg19; genome annotation: V19 3.0 GB
ENCFF697JXA.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 101.9 MB
ENCFF752THD.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 86.5 MB
ENCFF768ZNP.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.2 GB
ENCFF788QTX.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 101.1 MB
ENCFF795GGT.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 92.1 MB
ENCFF813ICC.bam bam (alignments); assembly: hg19; genome annotation: V19 4.1 GB
ENCFF815YCQ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 84.2 MB
ENCFF825HAI.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF840EAX.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF843FAR.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 15.6 MB
ENCFF848LJZ.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF861GVW.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 103.8 MB
ENCFF893AGN.fastq fastq (reads) 2.0 GB
ENCFF894VEL.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 4.3 MB
ENCFF896CIS.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF897XZP.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 94.7 MB
ENCFF899RMH.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 113.1 MB
ENCFF925SDW.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 93.0 MB
ENCFF936VEV.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 100.0 MB
ENCFF936ZPB.bam bam (alignments); assembly: hg19; genome annotation: V19 3.9 GB
ENCFF944YLS.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 99.9 MB
ENCFF947XYB.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF949KZT.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 91.4 MB
ENCFF988BFJ.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 5.0 GB
ENCFF998ILK.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCSR961YAG ENCSR · via encode_api

shRNA knockdown against EIF4A3 in K562 cells followed by RNA-seq. (EIF4A3-LV08)

Homo sapiens

92 data files
FileTypeSize
ENCFF005SRD.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 82.7 MB
ENCFF007NCX.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 77.3 MB
ENCFF030INZ.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF067HJU.bam bam (alignments); assembly: hg19; genome annotation: V19 3.6 GB
ENCFF068MEE.fastq fastq (reads) 2.2 GB
ENCFF094YZI.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 78.2 MB
ENCFF095TQY.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 5.0 GB
ENCFF114UIF.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 76.0 MB
ENCFF115BQP.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.7 MB
ENCFF122VAF.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF124JTW.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF163BUB.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 79.1 MB
ENCFF176PLY.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 94.1 MB
ENCFF188BHE.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 72.3 MB
ENCFF210XUK.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF211TCF.bam bam (alignments); assembly: hg19; genome annotation: V19 3.5 GB
ENCFF218AJI.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 82.6 MB
ENCFF233YWR.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 85.2 MB
ENCFF242GLA.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 3.0 MB
ENCFF244HMG.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF244WSD.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 83.3 MB
ENCFF279SIG.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF300VFG.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 86.2 MB
ENCFF305JXV.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 5.3 GB
ENCFF313ILW.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 6.0 MB
ENCFF313MCX.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.4 MB
ENCFF315VVI.bam bam (alignments); assembly: hg19; genome annotation: V19 4.1 GB
ENCFF348RQQ.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 95.0 MB
ENCFF369SDG.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 82.8 MB
ENCFF391DOH.bam bam (alignments); assembly: hg19; genome annotation: V19 3.6 GB
ENCFF420DQK.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 83.5 MB
ENCFF448NUK.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 4.5 GB
ENCFF453HNB.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 94.2 MB
ENCFF466OQG.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 5.4 MB
ENCFF469BKC.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 79.6 MB
ENCFF474GBS.bam bam (alignments); assembly: hg19; genome annotation: V19 4.2 GB
ENCFF484HVI.bam bam (alignments); assembly: GRCh38; genome annotation: V29 4.5 GB
ENCFF484ZMG.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 94.1 MB
ENCFF488KYT.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 74.1 MB
ENCFF489NAF.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.9 MB
ENCFF498AZE.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 79.4 MB
ENCFF530LUV.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 77.4 MB
ENCFF538YQN.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 84.5 MB
ENCFF542MIC.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.3 GB
ENCFF546SPZ.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF550GMD.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 95.2 MB
ENCFF578WKT.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 94.2 MB
ENCFF583BUI.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 80.4 MB
ENCFF589YCH.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 4.7 GB
ENCFF591OLN.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 84.5 MB
ENCFF632NRD.fastq fastq (reads) 2.2 GB
ENCFF639NEE.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 85.8 MB
ENCFF665KTK.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 4.6 GB
ENCFF697ACQ.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 83.1 MB
ENCFF704GSO.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 84.5 MB
ENCFF709TAI.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF717LSK.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 83.8 MB
ENCFF729WYH.bam bam (alignments); assembly: GRCh38; genome annotation: V29 4.3 GB
ENCFF732WIF.fastq fastq (reads) 2.3 GB
ENCFF733IKA.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 4.4 GB
ENCFF735ZRL.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 4.3 MB
ENCFF743PNJ.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.5 GB
ENCFF755QBU.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.8 MB
ENCFF758ICM.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 92.6 MB
ENCFF761HLG.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF762KOP.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 94.2 MB
ENCFF769QDO.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 85.2 MB
ENCFF786LZI.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.8 MB
ENCFF834YKI.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 76.5 MB
ENCFF841JOR.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 93.1 MB
ENCFF855YOH.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 84.8 MB
ENCFF867OPG.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.6 GB
ENCFF868GCX.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 91.8 MB
ENCFF876JAF.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.4 MB
ENCFF888KTK.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 74.6 MB
ENCFF896AJI.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 77.5 MB
ENCFF899MVF.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 83.1 MB
ENCFF904ACZ.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 95.0 MB
ENCFF919HTF.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 95.2 MB
ENCFF921GEV.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 83.4 MB
ENCFF925LXG.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.7 GB
ENCFF940CID.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 79.2 MB
ENCFF950ZVI.bam bam (alignments); assembly: hg19; genome annotation: V19 3.5 GB
ENCFF953YFL.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 72.7 MB
ENCFF954QAF.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 4.7 MB
ENCFF961VUQ.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 84.2 MB
ENCFF963FVH.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 78.6 MB
ENCFF964RKY.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF964WBP.fastq fastq (reads) 2.2 GB
ENCFF989DNB.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 81.5 MB
ENCFF989ONP.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 83.3 MB
ENCFF993BYD.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 16.0 MB
ENCSR149DMY ENCSR · via encode_api

shRNA knockdown against RBM25 in K562 cells followed by RNA-seq. (RBM25-LV08)

Homo sapiens

92 data files
FileTypeSize
ENCFF029OWV.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF039MWB.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 4.2 GB
ENCFF043OJE.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 74.5 MB
ENCFF068HDJ.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 4.3 GB
ENCFF111XLE.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 86.5 MB
ENCFF122FIT.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 75.8 MB
ENCFF127FOQ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 74.2 MB
ENCFF137AXT.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 69.4 MB
ENCFF145BCN.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 67.1 MB
ENCFF170CUT.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 2.9 MB
ENCFF187ATA.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 78.8 MB
ENCFF194SED.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF202OKI.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.8 GB
ENCFF203CKU.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 78.7 MB
ENCFF219KOG.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 78.3 MB
ENCFF219OMI.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 72.0 MB
ENCFF221XXV.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 75.5 MB
ENCFF224QQU.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF227EVH.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 76.4 MB
ENCFF237RNX.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 88.0 MB
ENCFF248AEK.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF259NBN.fastq fastq (reads) 2.1 GB
ENCFF268CXC.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 72.2 MB
ENCFF274EQP.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 76.8 MB
ENCFF289ZLR.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF297UGT.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 64.5 MB
ENCFF302DRK.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 86.5 MB
ENCFF305EUU.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 59.2 MB
ENCFF330CKB.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 68.5 MB
ENCFF342RQZ.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 78.7 MB
ENCFF361RQH.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 57.4 MB
ENCFF367GZA.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 76.9 MB
ENCFF380FEW.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.7 MB
ENCFF381HLN.bam bam (alignments); assembly: GRCh38; genome annotation: V29 4.1 GB
ENCFF383LNY.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF391BQF.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 75.5 MB
ENCFF426ZUD.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 4.8 GB
ENCFF441VXH.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF444PER.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 66.3 MB
ENCFF455RWK.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 67.5 MB
ENCFF464LGM.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF490VEC.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 67.8 MB
ENCFF498LOB.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF516ZXX.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 84.9 MB
ENCFF522GQU.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 63.6 MB
ENCFF533VUB.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 86.4 MB
ENCFF538LDO.fastq fastq (reads) 1.8 GB
ENCFF579PPW.bam bam (alignments); assembly: hg19; genome annotation: V19 3.3 GB
ENCFF584WGK.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 79.5 MB
ENCFF590FLD.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 4.0 GB
ENCFF603RFL.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF603WJH.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 62.0 MB
ENCFF603ZDN.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 76.6 MB
ENCFF611BTZ.bam bam (alignments); assembly: hg19; genome annotation: V19 2.8 GB
ENCFF611QCD.fastq fastq (reads) 1.8 GB
ENCFF635MIF.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.4 MB
ENCFF635OHV.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.0 GB
ENCFF654NKT.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.3 MB
ENCFF669ILF.fastq fastq (reads) 2.1 GB
ENCFF694ZFP.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 68.8 MB
ENCFF712JZR.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.9 MB
ENCFF719AYW.bam bam (alignments); assembly: hg19; genome annotation: V19 3.3 GB
ENCFF727RUW.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 87.9 MB
ENCFF728UYE.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 63.0 MB
ENCFF733BCH.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 73.5 MB
ENCFF738KVQ.bam bam (alignments); assembly: hg19; genome annotation: V19 2.8 GB
ENCFF742SWP.bam bam (alignments); assembly: GRCh38; genome annotation: V29 3.8 GB
ENCFF744MBP.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 64.9 MB
ENCFF777NOA.bam bam (alignments); assembly: hg19; genome annotation: V19 3.9 GB
ENCFF795ALG.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 65.5 MB
ENCFF798CLR.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 3.4 MB
ENCFF801GMS.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 77.8 MB
ENCFF803KYL.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 65.6 MB
ENCFF822TUL.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.1 GB
ENCFF828AAE.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 4.1 MB
ENCFF833XCW.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 73.8 MB
ENCFF849BVC.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.6 MB
ENCFF852WKL.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 66.7 MB
ENCFF877WFU.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 3.6 GB
ENCFF880OGL.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 13.0 MB
ENCFF890TXH.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 5.4 MB
ENCFF896XXI.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF900SGI.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 63.7 MB
ENCFF905XDF.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 76.6 MB
ENCFF910IIG.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 71.5 MB
ENCFF912DCG.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.4 GB
ENCFF918XAO.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 61.6 MB
ENCFF935UND.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 3.5 GB
ENCFF961GMF.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 76.8 MB
ENCFF968YVG.bam bam (alignments); assembly: hg19; genome annotation: V19 3.3 GB
ENCFF981TVS.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.2 MB
ENCFF990RCC.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 68.4 MB
ENCSR338CON ENCSR · via encode_api

shRNA knockdown against AKAP1 in K562 cells followed by RNA-seq. (AKAP1-LV08)

Homo sapiens

92 data files
FileTypeSize
ENCFF026JDH.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCFF032AMA.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 96.1 MB
ENCFF056ACD.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 73.2 MB
ENCFF057ZCF.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 87.5 MB
ENCFF059NDC.bam bam (alignments); assembly: hg19; genome annotation: V19 3.6 GB
ENCFF060GRQ.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 3.3 MB
ENCFF064NGZ.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.4 MB
ENCFF066CIA.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 97.8 MB
ENCFF070VTX.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 4.6 GB
ENCFF075FRX.bam bam (alignments); assembly: hg19; genome annotation: V19 3.8 GB
ENCFF078VVQ.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 3.7 MB
ENCFF086LTO.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 78.1 MB
ENCFF087FEN.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF097CPA.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF102CMX.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 88.9 MB
ENCFF119KHX.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF119LCR.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 5.2 GB
ENCFF129LXJ.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 82.6 MB
ENCFF179UJS.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.9 GB
ENCFF184MZJ.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 86.8 MB
ENCFF251MSZ.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 4.2 MB
ENCFF264PYJ.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V24 25.3 MB
ENCFF275NYS.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.7 GB
ENCFF300TLA.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 96.0 MB
ENCFF304MOC.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V29 89.1 MB
ENCFF308IDY.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 67.9 MB
ENCFF318BCU.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 95.5 MB
ENCFF325IPH.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 86.8 MB
ENCFF366AMY.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 79.9 MB
ENCFF377UTD.bam bam (alignments); assembly: GRCh38; genome annotation: V29 4.4 GB
ENCFF379QQY.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 79.3 MB
ENCFF405DNR.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 86.8 MB
ENCFF406CHS.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF409WZH.bam bam (alignments); assembly: GRCh38; genome annotation: V24 4.4 GB
ENCFF429ABV.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 83.2 MB
ENCFF435HPO.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 79.4 MB
ENCFF436MDF.tsv tsv (gene quantifications); assembly: hg19; genome annotation: V19 9.1 MB
ENCFF439OOS.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.9 MB
ENCFF441YKS.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 85.7 MB
ENCFF446YQT.bam bam (alignments); assembly: hg19; genome annotation: V19 3.6 GB
ENCFF457LGU.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 97.8 MB
ENCFF462SZI.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 78.6 MB
ENCFF527DFW.bam bam (alignments); assembly: hg19; genome annotation: V19 4.3 GB
ENCFF527VUU.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V29 90.5 MB
ENCFF554DIO.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 74.5 MB
ENCFF554KHL.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 1.7 MB
ENCFF561YSC.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 76.8 MB
ENCFF567SRK.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 80.3 MB
ENCFF570PEZ.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 27.4 MB
ENCFF571AIF.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 78.1 MB
ENCFF583LJO.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 71.9 MB
ENCFF590XNR.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 79.4 MB
ENCFF604SAI.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 5.4 MB
ENCFF625WOE.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 75.6 MB
ENCFF635LYD.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 84.8 MB
ENCFF650HIW.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.5 MB
ENCFF650YAG.bigWig bigWig (minus strand signal of all reads); assembly: GRCh38; genome annotation: V24 89.1 MB
ENCFF659NBH.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 76.0 MB
ENCFF666TAZ.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 4.7 GB
ENCFF678UEX.bam bam (transcriptome alignments); assembly: hg19; genome annotation: V19 4.6 GB
ENCFF680MXI.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 73.8 MB
ENCFF682FOV.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 72.3 MB
ENCFF683XJD.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V24 9.5 MB
ENCFF691FHB.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V24 4.7 GB
ENCFF695DWN.tar tar (differential splicing quantifications); assembly: hg19; genome annotation: V19 16.1 MB
ENCFF696BJK.tsv tsv (transcript quantifications); assembly: hg19; genome annotation: V19 24.9 MB
ENCFF707AAF.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 93.8 MB
ENCFF714OWM.fastq fastq (reads) 2.4 GB
ENCFF723TZD.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 76.8 MB
ENCFF745UPO.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 84.0 MB
ENCFF758MMI.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 74.4 MB
ENCFF771CVE.bigWig bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 81.2 MB
ENCFF773ZUP.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 90.5 MB
ENCFF789EGA.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 80.3 MB
ENCFF789UTB.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 77.2 MB
ENCFF804VKH.fastq fastq (reads) 2.2 GB
ENCFF825OSD.bam bam (alignments); assembly: hg19; genome annotation: V19 4.4 GB
ENCFF835GXJ.fastq fastq (reads) 2.3 GB
ENCFF840LUR.bigWig bigWig (plus strand signal of unique reads); assembly: hg19; genome annotation: V19 70.1 MB
ENCFF865FBH.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V24 76.4 MB
ENCFF881SZI.bam bam (transcriptome alignments); assembly: GRCh38; genome annotation: V29 5.2 GB
ENCFF885CJC.bam bam (alignments); assembly: GRCh38; genome annotation: V24 3.7 GB
ENCFF893OHK.bam bam (alignments); assembly: hg19; genome annotation: V19 3.8 GB
ENCFF895SOI.tsv tsv (gene quantifications); assembly: GRCh38; genome annotation: V29 10.4 MB
ENCFF916JSU.bigWig bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 77.9 MB
ENCFF929PHX.tsv tsv (differential expression quantifications); assembly: hg19; genome annotation: V19 2.9 MB
ENCFF934XRW.fastq fastq (reads) 2.3 GB
ENCFF936HJY.bigWig bigWig (plus strand signal of all reads); assembly: GRCh38; genome annotation: V24 84.1 MB
ENCFF936PBS.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38; genome annotation: V29 84.2 MB
ENCFF962ALJ.bam bam (alignments); assembly: GRCh38; genome annotation: V29 4.7 GB
ENCFF965NHC.bigWig bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 78.2 MB
ENCFF979ZLP.tsv tsv (transcript quantifications); assembly: GRCh38; genome annotation: V29 29.8 MB
ENCSR234DYH ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) mock pulldown control experiment of hnRNPF

1 data file
FileTypeSize
ENCFF002DGA.fastq fastq (reads) 611.1 MB
ENCSR394HHV ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) mock pulldown control experiment of hnRNPD

1 data file
FileTypeSize
ENCFF002DFT.fastq fastq (reads) 603.1 MB
ENCSR669DKA ENCSR · via encode_api

eCLIP control experiment on K562 against HNRNPK

Homo sapiens

8 data files
FileTypeSize
ENCFF192JZL.bigWig bigWig (minus strand signal of unique reads) 10.3 MB
ENCFF214MOY.bigWig bigWig (plus strand signal of unique reads) 10.6 MB
ENCFF223QBU.fastq fastq (reads) 251.2 MB
ENCFF280QZL.fastq fastq (reads) 261.3 MB
ENCFF399CEH.bam bam (alignments) 213.1 MB
ENCFF567GNU.bigWig bigWig (minus strand signal of unique reads) 10.2 MB
ENCFF742LSN.bam bam (alignments) 212.0 MB
ENCFF801TXF.bigWig bigWig (plus strand signal of unique reads) 10.6 MB
ENCSR722LZB ENCSR · via encode_api

eCLIP control experiment on K562 against CSTF2T

Homo sapiens

8 data files
FileTypeSize
ENCFF048AYC.bigWig bigWig (plus strand signal of unique reads) 22.4 MB
ENCFF161QNF.bigWig bigWig (plus strand signal of unique reads) 22.2 MB
ENCFF234QSA.bam bam (alignments) 439.4 MB
ENCFF271URZ.fastq fastq (reads) 552.6 MB
ENCFF469KLO.bigWig bigWig (minus strand signal of unique reads) 21.4 MB
ENCFF599GSZ.fastq fastq (reads) 532.6 MB
ENCFF729BOP.bam bam (alignments) 437.2 MB
ENCFF999RGE.bigWig bigWig (minus strand signal of unique reads) 21.7 MB
ENCSR435EVK ENCSR · via encode_api

eCLIP control experiment on K562 against SND1

Homo sapiens

8 data files
FileTypeSize
ENCFF056XTI.fastq fastq (reads) 561.9 MB
ENCFF127WBJ.bigWig bigWig (plus strand signal of unique reads) 27.6 MB
ENCFF153XAY.bigWig bigWig (minus strand signal of unique reads) 26.8 MB
ENCFF438IIB.bam bam (alignments) 596.1 MB
ENCFF501RLP.bigWig bigWig (plus strand signal of unique reads) 27.7 MB
ENCFF502YXG.bam bam (alignments) 594.7 MB
ENCFF711IGJ.fastq fastq (reads) 542.6 MB
ENCFF914JXE.bigWig bigWig (minus strand signal of unique reads) 26.7 MB
ENCSR031RRO ENCSR · via encode_api

Control shRNA against no target in K562 cells followed by RNA-seq. (NT_BGKLV25B)

Homo sapiens

84 data files
FileTypeSize
ENCFF006RAG.bigWig bigWig (minus strand signal of unique reads) 106.5 MB
ENCFF023NHZ.bigWig bigWig (plus strand signal of unique reads) 108.1 MB
ENCFF043VJU.fastq fastq (reads) 4.6 GB
ENCFF050CUP.bigWig bigWig (plus strand signal of all reads) 102.0 MB
ENCFF056FCE.bigWig bigWig (minus strand signal of all reads) 98.6 MB
ENCFF061ZBS.tsv tsv (transcript quantifications) 24.9 MB
ENCFF080YKC.bigWig bigWig (plus strand signal of all reads) 122.2 MB
ENCFF083QIO.bam bam (alignments) 7.2 GB
ENCFF094YMK.bigWig bigWig (plus strand signal of all reads) 100.4 MB
ENCFF097VLY.bigWig bigWig (plus strand signal of all reads) 103.2 MB
ENCFF108AVC.bigWig bigWig (minus strand signal of unique reads) 90.3 MB
ENCFF123IYA.bigWig bigWig (plus strand signal of all reads) 105.2 MB
ENCFF129KKM.tsv tsv (transcript quantifications) 27.4 MB
ENCFF138EDI.bigWig bigWig (minus strand signal of unique reads) 106.0 MB
ENCFF143ZEX.bigWig bigWig (plus strand signal of unique reads) 108.5 MB
ENCFF144HHG.bigWig bigWig (minus strand signal of all reads) 121.9 MB
ENCFF148XKW.bam bam (alignments) 6.8 GB
ENCFF153ZKZ.bigWig bigWig (minus strand signal of all reads) 121.9 MB
ENCFF178YRS.tsv tsv (transcript quantifications) 27.4 MB
ENCFF200WXE.bam bam (alignments) 7.1 GB
ENCFF211TYE.tsv tsv (transcript quantifications) 25.4 MB
ENCFF230FOJ.bigWig bigWig (minus strand signal of all reads) 100.1 MB
ENCFF233NPT.bigWig bigWig (plus strand signal of unique reads) 108.3 MB
ENCFF243UWP.bigWig bigWig (plus strand signal of unique reads) 108.5 MB
ENCFF253IWD.bigWig bigWig (minus strand signal of unique reads) 89.9 MB
ENCFF256DQQ.bigWig bigWig (plus strand signal of unique reads) 97.4 MB
ENCFF258YJA.bigWig bigWig (minus strand signal of unique reads) 105.9 MB
ENCFF272FNP.bam bam (alignments) 8.6 GB
ENCFF278POY.bam bam (transcriptome alignments) 9.0 GB
ENCFF284XCY.bam bam (transcriptome alignments) 8.6 GB
ENCFF302UBD.bigWig bigWig (plus strand signal of unique reads) 95.5 MB
ENCFF306VXJ.bam bam (alignments) 8.2 GB
ENCFF309SNE.bigWig bigWig (minus strand signal of all reads) 122.6 MB
ENCFF339HPY.tsv tsv (transcript quantifications) 29.9 MB
ENCFF342HNV.tsv tsv (transcript quantifications) 29.9 MB
ENCFF342RVQ.bigWig bigWig (plus strand signal of all reads) 123.8 MB
ENCFF355JDF.bam bam (alignments) 8.6 GB
ENCFF361RLP.fastq fastq (reads) 4.5 GB
ENCFF377GFU.bam bam (transcriptome alignments) 8.5 GB
ENCFF401UMC.bigWig bigWig (plus strand signal of all reads) 123.1 MB
ENCFF402MGG.bigWig bigWig (minus strand signal of all reads) 120.1 MB
ENCFF419UWR.bam bam (alignments) 7.0 GB
ENCFF420GNS.tsv tsv (transcript quantifications) 25.4 MB
ENCFF435NBC.bigWig bigWig (plus strand signal of all reads) 104.8 MB
ENCFF455GTW.bigWig bigWig (minus strand signal of all reads) 103.0 MB
ENCFF481CZF.tsv tsv (gene quantifications) 10.4 MB
ENCFF485ZUM.bigWig bigWig (plus strand signal of all reads) 121.4 MB
ENCFF513CBO.bigWig bigWig (minus strand signal of all reads) 120.8 MB
ENCFF519WJE.bam bam (alignments) 8.8 GB
ENCFF534HZX.bigWig bigWig (minus strand signal of all reads) 100.8 MB
ENCFF538ODW.bam bam (alignments) 7.1 GB
ENCFF567TWJ.bigWig bigWig (plus strand signal of unique reads) 92.4 MB
ENCFF569CWO.bam bam (alignments) 6.8 GB
ENCFF590XZE.bigWig bigWig (minus strand signal of unique reads) 93.9 MB
ENCFF602HXH.bigWig bigWig (minus strand signal of unique reads) 93.5 MB
ENCFF631CPZ.bigWig bigWig (plus strand signal of unique reads) 95.8 MB
ENCFF651DDH.bigWig bigWig (plus strand signal of unique reads) 108.8 MB
ENCFF651HSF.bigWig bigWig (minus strand signal of unique reads) 105.5 MB
ENCFF665EIC.tsv tsv (gene quantifications) 9.5 MB
ENCFF672UOG.tsv tsv (gene quantifications) 10.4 MB
ENCFF706TLZ.bigWig bigWig (plus strand signal of all reads) 123.9 MB
ENCFF707ULP.bam bam (transcriptome alignments) 9.6 GB
ENCFF733CZC.bam bam (transcriptome alignments) 9.0 GB
ENCFF765TWT.bam bam (alignments) 8.8 GB
ENCFF777HTI.bigWig bigWig (plus strand signal of unique reads) 96.0 MB
ENCFF784AXU.bigWig bigWig (minus strand signal of unique reads) 93.5 MB
ENCFF803FSB.fastq fastq (reads) 4.3 GB
ENCFF803HSJ.tsv tsv (gene quantifications) 9.5 MB
ENCFF815ZLH.tsv tsv (gene quantifications) 9.1 MB
ENCFF827KTS.fastq fastq (reads) 4.4 GB
ENCFF835BNO.bigWig bigWig (minus strand signal of unique reads) 94.9 MB
ENCFF840VCF.bam bam (alignments) 8.6 GB
ENCFF849RPY.bigWig bigWig (plus strand signal of unique reads) 92.9 MB
ENCFF859GUO.bigWig bigWig (plus strand signal of all reads) 102.1 MB
ENCFF863NFY.tsv tsv (transcript quantifications) 24.9 MB
ENCFF901SHD.bigWig bigWig (minus strand signal of unique reads) 105.9 MB
ENCFF903PMN.bam bam (transcriptome alignments) 10.2 GB
ENCFF923LBN.bigWig bigWig (minus strand signal of unique reads) 106.3 MB
ENCFF947RLZ.bigWig bigWig (minus strand signal of all reads) 101.9 MB
ENCFF972SEZ.tsv tsv (gene quantifications) 9.1 MB
ENCFF973FJA.bigWig bigWig (plus strand signal of unique reads) 107.7 MB
ENCFF974ULK.bigWig bigWig (minus strand signal of all reads) 122.6 MB
ENCFF974YXC.bigWig bigWig (minus strand signal of all reads) 103.4 MB
ENCFF979LEZ.bigWig bigWig (plus strand signal of all reads) 123.1 MB
ENCSR845MNM ENCSR · via encode_api

RNA-seq on HepG2 cells treated with a CRISPR gRNA against SRSF7. (SRSF7_BGHcLV03)

Homo sapiens

92 data files
FileTypeSize
ENCFF013MHV.bigWig bigWig (plus strand signal of all reads) 73.1 MB
ENCFF020VDC.bigWig bigWig (plus strand signal of all reads) 81.4 MB
ENCFF038WNG.bigWig bigWig (minus strand signal of unique reads) 61.4 MB
ENCFF040SXY.bigWig bigWig (minus strand signal of unique reads) 65.0 MB
ENCFF063MFS.bigWig bigWig (minus strand signal of unique reads) 65.5 MB
ENCFF067LRN.bigWig bigWig (minus strand signal of all reads) 80.2 MB
ENCFF087QZV.bam bam (transcriptome alignments) 4.5 GB
ENCFF099LTO.bigWig bigWig (minus strand signal of unique reads) 71.7 MB
ENCFF102ARM.bigWig bigWig (plus strand signal of unique reads) 66.4 MB
ENCFF105OUQ.tsv tsv (transcript quantifications) 29.8 MB
ENCFF131HBS.bigWig bigWig (plus strand signal of all reads) 67.0 MB
ENCFF140YLX.bigWig bigWig (minus strand signal of unique reads) 64.5 MB
ENCFF152UFY.bam bam (alignments) 3.5 GB
ENCFF153QPW.bigWig bigWig (minus strand signal of all reads) 70.4 MB
ENCFF166RXE.bigWig bigWig (minus strand signal of all reads) 66.0 MB
ENCFF167NHL.bigWig bigWig (plus strand signal of unique reads) 60.3 MB
ENCFF171WSB.bigWig bigWig (minus strand signal of all reads) 72.8 MB
ENCFF198BFJ.tar tar (differential splicing quantifications) 4.7 MB
ENCFF199QUV.bigWig bigWig (plus strand signal of all reads) 80.9 MB
ENCFF220CPX.bam bam (alignments) 3.2 GB
ENCFF224GAS.bigWig bigWig (minus strand signal of unique reads) 67.0 MB
ENCFF233SMB.tsv tsv (gene quantifications) 9.1 MB
ENCFF236SPR.tsv tsv (gene quantifications) 9.5 MB
ENCFF274HPM.tsv tsv (transcript quantifications) 24.9 MB
ENCFF293EYK.fastq fastq (reads) 2.2 GB
ENCFF329WFJ.tsv tsv (gene quantifications) 9.4 MB
ENCFF332XCQ.tsv tsv (differential expression quantifications) 4.4 MB
ENCFF336CMH.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF336WXH.bam bam (alignments) 2.8 GB
ENCFF344SQW.bigWig bigWig (plus strand signal of all reads) 73.8 MB
ENCFF350KRZ.bigWig bigWig (plus strand signal of all reads) 81.4 MB
ENCFF356DCR.bigWig bigWig (plus strand signal of unique reads) 67.0 MB
ENCFF356PLJ.tsv tsv (differential expression quantifications) 1.8 MB
ENCFF360OKB.bigWig bigWig (plus strand signal of unique reads) 68.6 MB
ENCFF364ZRH.bigWig bigWig (minus strand signal of all reads) 67.2 MB
ENCFF365ZYD.bigWig bigWig (minus strand signal of all reads) 72.8 MB
ENCFF367EGU.tsv tsv (gene quantifications) 10.4 MB
ENCFF391NUD.tsv tsv (gene quantifications) 10.4 MB
ENCFF406GKL.tsv tsv (transcript quantifications) 27.2 MB
ENCFF411XKS.tar tar (differential splicing quantifications) 16.1 MB
ENCFF472NZW.bam bam (alignments) 3.5 GB
ENCFF478XVO.bigWig bigWig (plus strand signal of unique reads) 72.6 MB
ENCFF483IFA.bigWig bigWig (plus strand signal of unique reads) 72.9 MB
ENCFF515RGS.bigWig bigWig (plus strand signal of unique reads) 66.9 MB
ENCFF533TYW.bigWig bigWig (plus strand signal of all reads) 71.6 MB
ENCFF542SBP.bam bam (alignments) 3.2 GB
ENCFF556ISU.tsv tsv (transcript quantifications) 25.3 MB
ENCFF558RYT.tsv tsv (transcript quantifications) 27.4 MB
ENCFF562RLX.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF576OPT.bam bam (alignments) 3.4 GB
ENCFF583XPS.bigWig bigWig (minus strand signal of all reads) 71.9 MB
ENCFF592DFK.bigWig bigWig (plus strand signal of all reads) 73.8 MB
ENCFF604ZGB.bigWig bigWig (plus strand signal of unique reads) 62.8 MB
ENCFF614YKX.bigWig bigWig (minus strand signal of unique reads) 65.6 MB
ENCFF616GXP.bam bam (transcriptome alignments) 4.5 GB
ENCFF628OIQ.bam bam (alignments) 3.8 GB
ENCFF630QTD.bam bam (alignments) 2.8 GB
ENCFF634DHW.bam bam (alignments) 4.0 GB
ENCFF646QLQ.bigWig bigWig (minus strand signal of all reads) 72.3 MB
ENCFF679WBV.bigWig bigWig (plus strand signal of unique reads) 63.0 MB
ENCFF706GMO.tar tar (differential splicing quantifications) 3.6 MB
ENCFF724UKD.bigWig bigWig (plus strand signal of unique reads) 73.4 MB
ENCFF727KGS.bigWig bigWig (minus strand signal of all reads) 80.0 MB
ENCFF733PVK.bigWig bigWig (minus strand signal of unique reads) 70.9 MB
ENCFF753MRP.bam bam (transcriptome alignments) 5.1 GB
ENCFF757NZN.bam bam (alignments) 2.8 GB
ENCFF780SLV.bigWig bigWig (plus strand signal of unique reads) 66.1 MB
ENCFF785YXO.bigWig bigWig (plus strand signal of unique reads) 68.7 MB
ENCFF793EAL.bigWig bigWig (minus strand signal of unique reads) 67.2 MB
ENCFF799WYC.tsv tsv (gene quantifications) 9.1 MB
ENCFF802SMQ.fastq fastq (reads) 2.3 GB
ENCFF802UEW.bam bam (transcriptome alignments) 5.1 GB
ENCFF824CNP.bam bam (transcriptome alignments) 5.2 GB
ENCFF827MRB.bigWig bigWig (plus strand signal of all reads) 68.3 MB
ENCFF833JDS.bigWig bigWig (plus strand signal of all reads) 73.1 MB
ENCFF837XLH.bigWig bigWig (minus strand signal of unique reads) 59.0 MB
ENCFF870LAE.bam bam (transcriptome alignments) 5.9 GB
ENCFF872JNM.bigWig bigWig (minus strand signal of all reads) 72.5 MB
ENCFF873XUV.tsv tsv (transcript quantifications) 24.9 MB
ENCFF879NNR.fastq fastq (reads) 1.9 GB
ENCFF887QOV.bam bam (alignments) 4.0 GB
ENCFF890GLO.bigWig bigWig (minus strand signal of unique reads) 71.2 MB
ENCFF900ZRW.bigWig bigWig (plus strand signal of all reads) 73.8 MB
ENCFF903PNA.tsv tsv (differential expression quantifications) 2.0 MB
ENCFF905HNO.tsv tsv (transcript quantifications) 25.3 MB
ENCFF905YDM.bigWig bigWig (minus strand signal of unique reads) 61.7 MB
ENCFF912KBR.tsv tsv (transcript quantifications) 29.8 MB
ENCFF915RMG.bigWig bigWig (minus strand signal of all reads) 80.2 MB
ENCFF919LSA.bam bam (alignments) 3.2 GB
ENCFF922NNR.bigWig bigWig (plus strand signal of all reads) 65.3 MB
ENCFF980VES.fastq fastq (reads) 1.9 GB
ENCFF991GYC.bigWig bigWig (minus strand signal of all reads) 64.1 MB
ENCSR619LRH ENCSR · via encode_api

eCLIP control experiment on HepG2 against TROVE2

Homo sapiens

8 data files
FileTypeSize
ENCFF035KPX.bigWig bigWig (minus strand signal of unique reads) 37.5 MB
ENCFF194SFB.bam bam (alignments) 751.6 MB
ENCFF238PHM.bigWig bigWig (minus strand signal of unique reads) 36.2 MB
ENCFF456RUG.fastq fastq (reads) 750.8 MB
ENCFF465JRJ.fastq fastq (reads) 673.1 MB
ENCFF777TUS.bigWig bigWig (plus strand signal of unique reads) 37.5 MB
ENCFF835FXZ.bigWig bigWig (plus strand signal of unique reads) 36.8 MB
ENCFF894PGH.bam bam (alignments) 766.9 MB
ENCSR883DFK ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) input control experiment of TRA2A

1 data file
FileTypeSize
ENCFF979UHU.fastq fastq (reads) 257.6 MB
ENCSR564OYI ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) input control experiment of KHDRBS2

1 data file
FileTypeSize
ENCFF449THM.fastq fastq (reads) 467.8 MB
ENCSR387RGT ENCSR · via encode_api

eCLIP control experiment on K562 against IGF2BP2

Homo sapiens

8 data files
FileTypeSize
ENCFF011HZT.bam bam (alignments) 169.9 MB
ENCFF426FUU.bigWig bigWig (plus strand signal of unique reads) 10.9 MB
ENCFF491AKD.bigWig bigWig (minus strand signal of unique reads) 10.4 MB
ENCFF610LIH.fastq fastq (reads) 261.8 MB
ENCFF647SFR.bigWig bigWig (plus strand signal of unique reads) 10.9 MB
ENCFF810PVM.bigWig bigWig (minus strand signal of unique reads) 10.5 MB
ENCFF819GBX.bam bam (alignments) 170.8 MB
ENCFF939IUP.fastq fastq (reads) 272.1 MB
ENCSR799EKA ENCSR · via encode_api

eCLIP control experiment on HepG2 against RBFOX2

Homo sapiens

8 data files
FileTypeSize
ENCFF139QQP.bigWig bigWig (plus strand signal of unique reads) 16.5 MB
ENCFF264UQQ.fastq fastq (reads) 488.2 MB
ENCFF515BTB.bam bam (alignments) 353.9 MB
ENCFF582MIQ.bigWig bigWig (minus strand signal of unique reads) 16.0 MB
ENCFF590UCY.bam bam (alignments) 349.6 MB
ENCFF592MRJ.bigWig bigWig (minus strand signal of unique reads) 15.8 MB
ENCFF648TWD.fastq fastq (reads) 469.4 MB
ENCFF655YBJ.bigWig bigWig (plus strand signal of unique reads) 16.2 MB
ENCSR709ABG ENCSR · via encode_api

eCLIP control experiment on HepG2 against NOL12

Homo sapiens

8 data files
FileTypeSize
ENCFF026OKT.bam bam (alignments) 444.3 MB
ENCFF218DLM.bigWig bigWig (minus strand signal of unique reads) 19.6 MB
ENCFF464UMY.bigWig bigWig (plus strand signal of unique reads) 19.6 MB
ENCFF579SPM.bigWig bigWig (minus strand signal of unique reads) 19.2 MB
ENCFF635VEP.fastq fastq (reads) 588.0 MB
ENCFF818JLM.bam bam (alignments) 435.5 MB
ENCFF847HXV.fastq fastq (reads) 618.6 MB
ENCFF853LVO.bigWig bigWig (plus strand signal of unique reads) 20.0 MB
ENCSR305KNE ENCSR · via encode_api

eCLIP control experiment on K562 against SF3B4

Homo sapiens

8 data files
FileTypeSize
ENCFF002UEA.bigWig bigWig (plus strand signal of unique reads) 24.3 MB
ENCFF492WZW.fastq fastq (reads) 807.4 MB
ENCFF503WPM.bam bam (alignments) 514.1 MB
ENCFF586CAN.bigWig bigWig (minus strand signal of unique reads) 22.9 MB
ENCFF627KBO.bigWig bigWig (plus strand signal of unique reads) 23.7 MB
ENCFF735PKL.bam bam (alignments) 524.9 MB
ENCFF763PEV.bigWig bigWig (minus strand signal of unique reads) 23.5 MB
ENCFF802HAI.fastq fastq (reads) 769.3 MB
ENCSR626INQ ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) pulldown experiment against RBM45

13 data files
FileTypeSize
ENCFF084XGB.tsv tsv (library fraction) 265.0 KB
ENCFF143OQS.tsv tsv (library fraction) 15.4 KB
ENCFF275UGA.tsv tsv (enrichment) 10.0 KB
ENCFF294KSP.fastq fastq (reads) 398.1 MB
ENCFF303TMB.fastq fastq (reads) 274.0 MB
ENCFF311UQL.tsv tsv (enrichment) 41.0 KB
ENCFF453IBG.tsv tsv (enrichment) 168.0 KB
ENCFF466QPM.tsv tsv (library fraction) 1.1 MB
ENCFF575BTH.fastq fastq (reads) 566.9 MB
ENCFF631VOL.tsv tsv (library fraction) 64.4 KB
ENCFF660MFW.fastq fastq (reads) 781.9 MB
ENCFF782DRP.tsv tsv (enrichment) 688.1 KB
ENCFF902WXY.fastq fastq (reads) 589.7 MB
ENCSR009CIV ENCSR · via encode_api

eCLIP control experiment on K562 against NOLC1

Homo sapiens

8 data files
FileTypeSize
ENCFF011IBT.bigWig bigWig (minus strand signal of unique reads) 13.8 MB
ENCFF032GIW.bam bam (alignments) 280.1 MB
ENCFF105DRR.bigWig bigWig (minus strand signal of unique reads) 13.7 MB
ENCFF415WMT.bam bam (alignments) 278.6 MB
ENCFF418BBL.bigWig bigWig (plus strand signal of unique reads) 14.4 MB
ENCFF648BBJ.bigWig bigWig (plus strand signal of unique reads) 14.5 MB
ENCFF813QRH.fastq fastq (reads) 550.3 MB
ENCFF900HNJ.fastq fastq (reads) 541.6 MB
ENCSR535HJE ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) input control experiment of NOVA1

1 data file
FileTypeSize
ENCFF357LTA.fastq fastq (reads) 506.6 MB
ENCSR412NOW ENCSR · via encode_api

eCLIP experiment on K562 against HNRNPM

Homo sapiens

36 data files
FileTypeSize
ENCFF005PKK.bed bed (peaks) 1.5 MB
ENCFF016LSY.bed bed (peaks) 1.5 MB
ENCFF024KBB.fastq fastq (reads) 246.9 MB
ENCFF050PTL.bam bam (alignments) 230.3 MB
ENCFF058WYR.bed bed (peaks) 699.9 KB
ENCFF100CFV.bigBed bigBed (peaks) 2.9 MB
ENCFF100HQU.bigWig bigWig (minus strand signal of unique reads) 14.2 MB
ENCFF123ODC.bigBed bigBed (peaks) 708.0 KB
ENCFF168OOY.bigWig bigWig (minus strand signal of unique reads) 13.8 MB
ENCFF169FPF.fastq fastq (reads) 236.5 MB
ENCFF243GOY.bigWig bigWig (plus strand signal of unique reads) 14.7 MB
ENCFF251TWP.bigWig bigWig (plus strand signal of unique reads) 15.2 MB
ENCFF259AUE.bam bam (alignments) 230.4 MB
ENCFF295POA.bigBed bigBed (peaks) 2.9 MB
ENCFF307KHE.bigBed bigBed (peaks) 1.5 MB
ENCFF315KYY.fastq fastq (reads) 223.5 MB
ENCFF327FBF.bed bed (peaks) 1.5 MB
ENCFF329VCJ.bigWig bigWig (minus strand signal of unique reads) 14.3 MB
ENCFF342PGS.bed bed (peaks) 134.0 KB
ENCFF379LZD.bam bam (alignments) 228.5 MB
ENCFF389NRU.fastq fastq (reads) 214.3 MB
ENCFF426AJD.bigWig bigWig (plus strand signal of unique reads) 14.9 MB
ENCFF445ENC.bed bed (peaks) 134.3 KB
ENCFF462KTW.bed bed (peaks) 1.5 MB
ENCFF571NRK.bed bed (peaks) 272.1 KB
ENCFF630VFK.bigBed bigBed (peaks) 588.5 KB
ENCFF675ZIU.bed bed (peaks) 260.4 KB
ENCFF706HGN.bigBed bigBed (peaks) 2.9 MB
ENCFF810CZY.bigBed bigBed (peaks) 1.5 MB
ENCFF848MRK.bigBed bigBed (peaks) 2.4 MB
ENCFF854ARI.bigBed bigBed (peaks) 2.8 MB
ENCFF854QQW.bam bam (alignments) 232.9 MB
ENCFF868FLU.bigWig bigWig (minus strand signal of unique reads) 13.6 MB
ENCFF892XDU.bigBed bigBed (peaks) 2.9 MB
ENCFF895QHH.bigWig bigWig (plus strand signal of unique reads) 15.1 MB
ENCFF979QTN.bed bed (peaks) 663.2 KB
ENCSR080OLK ENCSR · via encode_api

eCLIP control experiment on HepG2 against ILF3

Homo sapiens

8 data files
FileTypeSize
ENCFF107PWV.bigWig bigWig (plus strand signal of unique reads) 14.8 MB
ENCFF160LFR.bam bam (alignments) 260.8 MB
ENCFF442SJM.bigWig bigWig (plus strand signal of unique reads) 15.2 MB
ENCFF489GBW.fastq fastq (reads) 371.2 MB
ENCFF500NQE.fastq fastq (reads) 324.5 MB
ENCFF641BAD.bigWig bigWig (minus strand signal of unique reads) 14.4 MB
ENCFF950TBS.bam bam (alignments) 253.5 MB
ENCFF982BUX.bigWig bigWig (minus strand signal of unique reads) 14.8 MB
ENCSR811FFO ENCSR · via encode_api

eCLIP control experiment on K562 against FAM120A

Homo sapiens

8 data files
FileTypeSize
ENCFF020ZSX.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 21.3 MB
ENCFF133OWC.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 21.4 MB
ENCFF135HYO.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 20.5 MB
ENCFF160DFZ.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 20.6 MB
ENCFF161YHF.fastq fastq (reads) 549.9 MB
ENCFF847OPT.bam bam (alignments); assembly: hg19 413.3 MB
ENCFF897LLL.fastq fastq (reads) 531.2 MB
ENCFF948CVQ.bam bam (alignments); assembly: GRCh38 414.9 MB
ENCSR309GHK ENCSR · via encode_api

eCLIP control experiment on HepG2 against CSTF2

Homo sapiens

8 data files
FileTypeSize
ENCFF091VTP.bam bam (alignments) 239.0 MB
ENCFF129RTI.bigWig bigWig (plus strand signal of unique reads) 13.5 MB
ENCFF413QVJ.fastq fastq (reads) 275.9 MB
ENCFF539ISA.bigWig bigWig (minus strand signal of unique reads) 13.1 MB
ENCFF583PLK.bigWig bigWig (plus strand signal of unique reads) 13.7 MB
ENCFF815MIN.bigWig bigWig (minus strand signal of unique reads) 13.3 MB
ENCFF836AYV.bam bam (alignments) 235.6 MB
ENCFF900NQN.fastq fastq (reads) 243.4 MB
ENCSR704LTK ENCSR · via encode_api

eCLIP control experiment on HepG2 against FKBP4

Homo sapiens

8 data files
FileTypeSize
ENCFF143QIL.fastq fastq (reads) 306.6 MB
ENCFF151HZU.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 17.2 MB
ENCFF194AMH.bam bam (alignments); assembly: hg19 328.7 MB
ENCFF233ONK.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 17.6 MB
ENCFF648UKF.fastq fastq (reads) 313.5 MB
ENCFF677BNB.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 17.1 MB
ENCFF903KIZ.bam bam (alignments); assembly: GRCh38 330.8 MB
ENCFF904BPY.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 17.5 MB
ENCSR755VBZ ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) mock pulldown control experiment of TAF15

1 data file
FileTypeSize
ENCFF160CZF.fastq fastq (reads) 342.3 MB
ENCSR619RLC ENCSR · via encode_api

eCLIP control experiment on K562 against TRA2A

Homo sapiens

8 data files
FileTypeSize
ENCFF057LEI.fastq fastq (reads) 380.0 MB
ENCFF068LVA.bam bam (alignments) 157.0 MB
ENCFF169EQC.fastq fastq (reads) 367.9 MB
ENCFF175TON.bam bam (alignments) 156.9 MB
ENCFF373CDK.bigWig bigWig (plus strand signal of unique reads) 9.6 MB
ENCFF489NNT.bigWig bigWig (plus strand signal of unique reads) 9.6 MB
ENCFF665TWY.bigWig bigWig (minus strand signal of unique reads) 9.1 MB
ENCFF673NIM.bigWig bigWig (minus strand signal of unique reads) 9.1 MB
ENCSR735MBZ ENCSR · via encode_api

eCLIP control experiment on K562 against FMR1

Homo sapiens

8 data files
FileTypeSize
ENCFF140QVQ.bam bam (alignments); assembly: GRCh38 180.0 MB
ENCFF227RQD.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 10.3 MB
ENCFF233FKH.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 10.4 MB
ENCFF328KAL.bam bam (alignments); assembly: hg19 178.8 MB
ENCFF456EHJ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 10.9 MB
ENCFF495FSA.fastq fastq (reads) 301.8 MB
ENCFF524AJF.fastq fastq (reads) 284.0 MB
ENCFF813XOE.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 11.0 MB
ENCSR696LLZ ENCSR · via encode_api

shRNA knockdown against NIP7 in HepG2 cells followed by RNA-seq. (NIP7_BGHLV18)

Homo sapiens

92 data files
FileTypeSize
ENCFF009HWE.bam bam (transcriptome alignments) 4.5 GB
ENCFF035RWF.bam bam (alignments) 3.0 GB
ENCFF040HYP.bigWig bigWig (plus strand signal of all reads) 64.1 MB
ENCFF054SAW.bigWig bigWig (plus strand signal of all reads) 68.9 MB
ENCFF062IUM.bigWig bigWig (plus strand signal of all reads) 74.8 MB
ENCFF065SRK.bigWig bigWig (minus strand signal of all reads) 73.0 MB
ENCFF079JKU.tsv tsv (transcript quantifications) 29.8 MB
ENCFF085UKM.bigWig bigWig (plus strand signal of unique reads) 60.8 MB
ENCFF095EHT.bigWig bigWig (plus strand signal of unique reads) 67.6 MB
ENCFF096XIJ.bam bam (alignments) 3.7 GB
ENCFF108QAA.bigWig bigWig (minus strand signal of unique reads) 57.3 MB
ENCFF116LEF.tsv tsv (transcript quantifications) 27.3 MB
ENCFF118ZDX.bigWig bigWig (minus strand signal of unique reads) 66.0 MB
ENCFF122YQQ.bam bam (alignments) 3.1 GB
ENCFF123ZRM.fastq fastq (reads) 2.0 GB
ENCFF137DOM.bigWig bigWig (plus strand signal of all reads) 62.5 MB
ENCFF167AAJ.bigWig bigWig (plus strand signal of unique reads) 67.8 MB
ENCFF177GNX.bigWig bigWig (plus strand signal of all reads) 67.8 MB
ENCFF179TRW.tsv tsv (gene quantifications) 10.4 MB
ENCFF195FNT.bigWig bigWig (plus strand signal of all reads) 71.8 MB
ENCFF202IHY.tsv tsv (transcript quantifications) 25.3 MB
ENCFF214KVZ.tar tar (differential splicing quantifications) 14.6 MB
ENCFF223CGN.bigWig bigWig (minus strand signal of unique reads) 66.1 MB
ENCFF247QGQ.bigWig bigWig (minus strand signal of all reads) 73.5 MB
ENCFF278IXR.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF296LGJ.bigWig bigWig (minus strand signal of all reads) 70.6 MB
ENCFF308LYA.tsv tsv (differential expression quantifications) 5.5 MB
ENCFF313ENU.bigWig bigWig (minus strand signal of unique reads) 65.5 MB
ENCFF328COJ.bigWig bigWig (plus strand signal of unique reads) 64.7 MB
ENCFF334LGN.fastq fastq (reads) 2.1 GB
ENCFF337UXW.bigWig bigWig (plus strand signal of unique reads) 67.2 MB
ENCFF345FKX.bigWig bigWig (minus strand signal of unique reads) 63.5 MB
ENCFF354LYI.bam bam (alignments) 3.7 GB
ENCFF355KBR.bigWig bigWig (plus strand signal of unique reads) 58.9 MB
ENCFF362XBJ.tsv tsv (transcript quantifications) 27.0 MB
ENCFF365NET.tsv tsv (gene quantifications) 9.1 MB
ENCFF379HNF.bam bam (alignments) 3.9 GB
ENCFF381XRZ.bigWig bigWig (minus strand signal of unique reads) 62.2 MB
ENCFF391OCV.bam bam (alignments) 3.9 GB
ENCFF403KYM.fastq fastq (reads) 2.0 GB
ENCFF404QKW.bigWig bigWig (minus strand signal of all reads) 66.6 MB
ENCFF407VKG.tar tar (differential splicing quantifications) 2.9 MB
ENCFF409KPD.tsv tsv (gene quantifications) 9.4 MB
ENCFF420GZN.bigWig bigWig (plus strand signal of unique reads) 61.4 MB
ENCFF433ROM.bigWig bigWig (minus strand signal of all reads) 64.5 MB
ENCFF438CXL.bigWig bigWig (minus strand signal of all reads) 73.5 MB
ENCFF444KAG.bigWig bigWig (minus strand signal of all reads) 63.6 MB
ENCFF444TEY.bigWig bigWig (minus strand signal of all reads) 67.6 MB
ENCFF460OQT.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF471KNH.tsv tsv (gene quantifications) 9.4 MB
ENCFF475CGM.tsv tsv (transcript quantifications) 24.9 MB
ENCFF487BVL.bigWig bigWig (plus strand signal of unique reads) 64.2 MB
ENCFF492AUT.bam bam (alignments) 3.1 GB
ENCFF498BZC.bigWig bigWig (minus strand signal of all reads) 63.0 MB
ENCFF549FRY.bigWig bigWig (plus strand signal of all reads) 65.9 MB
ENCFF573XAX.bigWig bigWig (plus strand signal of all reads) 71.8 MB
ENCFF580ELO.bigWig bigWig (minus strand signal of all reads) 70.1 MB
ENCFF580TCK.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF601VSB.bigWig bigWig (plus strand signal of all reads) 74.8 MB
ENCFF638ENO.tsv tsv (transcript quantifications) 24.9 MB
ENCFF652PYP.bam bam (alignments) 3.1 GB
ENCFF655PXP.tsv tsv (differential expression quantifications) 4.2 MB
ENCFF659LQE.bam bam (transcriptome alignments) 4.5 GB
ENCFF664QBS.bam bam (transcriptome alignments) 4.7 GB
ENCFF679MCM.bam bam (transcriptome alignments) 5.1 GB
ENCFF693UVR.bigWig bigWig (minus strand signal of unique reads) 63.1 MB
ENCFF698NMK.bam bam (transcriptome alignments) 4.7 GB
ENCFF704NJD.bigWig bigWig (plus strand signal of all reads) 71.1 MB
ENCFF717DYQ.tar tar (differential splicing quantifications) 3.4 MB
ENCFF724XPB.bigWig bigWig (plus strand signal of all reads) 74.1 MB
ENCFF728KOV.tsv tsv (transcript quantifications) 25.3 MB
ENCFF733RLI.bam bam (alignments) 3.3 GB
ENCFF734YQN.bigWig bigWig (minus strand signal of unique reads) 59.8 MB
ENCFF736XEX.bam bam (transcriptome alignments) 5.3 GB
ENCFF753DCN.bigWig bigWig (minus strand signal of unique reads) 62.7 MB
ENCFF774DZT.bam bam (alignments) 3.6 GB
ENCFF816XAH.bam bam (alignments) 3.0 GB
ENCFF829YOM.tsv tsv (transcript quantifications) 29.8 MB
ENCFF847PNK.tsv tsv (gene quantifications) 9.1 MB
ENCFF847YMN.bam bam (alignments) 3.7 GB
ENCFF854CYV.bigWig bigWig (minus strand signal of all reads) 70.6 MB
ENCFF866DZS.bigWig bigWig (minus strand signal of unique reads) 63.1 MB
ENCFF885RKO.fastq fastq (reads) 2.0 GB
ENCFF886JJF.bigWig bigWig (minus strand signal of unique reads) 59.0 MB
ENCFF900VOV.tsv tsv (gene quantifications) 10.4 MB
ENCFF918IDF.bigWig bigWig (minus strand signal of unique reads) 59.8 MB
ENCFF920OCJ.bigWig bigWig (plus strand signal of unique reads) 63.9 MB
ENCFF922QHJ.bigWig bigWig (plus strand signal of unique reads) 64.7 MB
ENCFF948NJT.bigWig bigWig (plus strand signal of unique reads) 61.2 MB
ENCFF950QCT.bigWig bigWig (plus strand signal of all reads) 65.0 MB
ENCFF954FSB.bigWig bigWig (plus strand signal of unique reads) 65.0 MB
ENCFF964MHP.bigWig bigWig (minus strand signal of all reads) 61.1 MB
ENCSR459ONR ENCSR · via encode_api

eCLIP control experiment on HepG2 against HNRNPM

Homo sapiens

8 data files
FileTypeSize
ENCFF021ZKT.bigWig bigWig (plus strand signal of unique reads) 18.4 MB
ENCFF072DMY.bigWig bigWig (plus strand signal of unique reads) 18.3 MB
ENCFF302HGT.fastq fastq (reads) 333.5 MB
ENCFF355NYZ.bam bam (alignments) 357.7 MB
ENCFF374BGY.fastq fastq (reads) 349.3 MB
ENCFF381PFB.bam bam (alignments) 355.7 MB
ENCFF572VPO.bigWig bigWig (minus strand signal of unique reads) 17.8 MB
ENCFF934TYZ.bigWig bigWig (minus strand signal of unique reads) 18.1 MB
ENCSR060VZF ENCSR · via encode_api

eCLIP control experiment on HepG2 against SRSF9

Homo sapiens

8 data files
FileTypeSize
ENCFF060BMG.bam bam (alignments) 186.9 MB
ENCFF078ESP.bigWig bigWig (minus strand signal of unique reads) 9.0 MB
ENCFF361CSS.fastq fastq (reads) 379.2 MB
ENCFF442LIA.bigWig bigWig (plus strand signal of unique reads) 9.2 MB
ENCFF463PBP.fastq fastq (reads) 370.8 MB
ENCFF487XVX.bigWig bigWig (minus strand signal of unique reads) 9.1 MB
ENCFF554CGX.bigWig bigWig (plus strand signal of unique reads) 9.3 MB
ENCFF849LMJ.bam bam (alignments) 185.1 MB
ENCSR963RLK ENCSR · via encode_api

RNA-seq on K562 cells treated with an shRNA knockdown against APOBEC3C. (APOBEC3C_BGKLV25)

Homo sapiens

92 data files
FileTypeSize
ENCFF003OVA.bigWig bigWig (plus strand signal of all reads) 87.7 MB
ENCFF010SSY.tsv tsv (gene quantifications) 10.4 MB
ENCFF023PWE.bigWig bigWig (plus strand signal of unique reads) 77.9 MB
ENCFF053UQJ.tsv tsv (gene quantifications) 10.4 MB
ENCFF058VLF.bigWig bigWig (plus strand signal of all reads) 77.1 MB
ENCFF068XYA.bigWig bigWig (minus strand signal of all reads) 86.7 MB
ENCFF087HAO.bigWig bigWig (minus strand signal of unique reads) 76.3 MB
ENCFF088SAZ.bigWig bigWig (minus strand signal of all reads) 73.5 MB
ENCFF089GQS.bam bam (alignments) 3.9 GB
ENCFF094DCR.bam bam (transcriptome alignments) 9.4 GB
ENCFF104DHV.bigWig bigWig (plus strand signal of unique reads) 69.1 MB
ENCFF125TRY.bam bam (alignments) 3.9 GB
ENCFF126ZWU.bigWig bigWig (minus strand signal of all reads) 102.7 MB
ENCFF137ERJ.bam bam (transcriptome alignments) 6.2 GB
ENCFF148FEQ.bigWig bigWig (plus strand signal of all reads) 74.8 MB
ENCFF151VOY.bigWig bigWig (minus strand signal of unique reads) 95.8 MB
ENCFF161PHC.bigWig bigWig (minus strand signal of unique reads) 97.6 MB
ENCFF162TVW.bigWig bigWig (plus strand signal of unique reads) 107.6 MB
ENCFF183TQG.bigWig bigWig (plus strand signal of all reads) 104.4 MB
ENCFF203NZB.bigWig bigWig (minus strand signal of unique reads) 76.2 MB
ENCFF210QRP.tar tar (differential splicing quantifications) 4.9 MB
ENCFF231CLP.bigWig bigWig (plus strand signal of unique reads) 106.7 MB
ENCFF236LSH.bam bam (alignments) 6.6 GB
ENCFF242UWI.bam bam (alignments) 4.8 GB
ENCFF243OZX.tsv tsv (transcript quantifications) 25.3 MB
ENCFF252IUL.bigWig bigWig (plus strand signal of unique reads) 72.3 MB
ENCFF274VRW.fastq fastq (reads) 2.5 GB
ENCFF305XBZ.bam bam (alignments) 8.1 GB
ENCFF340IQR.tsv tsv (differential expression quantifications) 2.8 MB
ENCFF357QRK.bigWig bigWig (minus strand signal of unique reads) 70.7 MB
ENCFF358AQL.bam bam (alignments) 4.8 GB
ENCFF364FKX.bigWig bigWig (minus strand signal of all reads) 76.2 MB
ENCFF377HLA.fastq fastq (reads) 2.5 GB
ENCFF381HAJ.bam bam (alignments) 8.1 GB
ENCFF411GWO.tsv tsv (gene quantifications) 9.4 MB
ENCFF412UDG.tsv tsv (transcript quantifications) 25.3 MB
ENCFF417JSJ.fastq fastq (reads) 4.3 GB
ENCFF448SNI.bigWig bigWig (plus strand signal of all reads) 121.1 MB
ENCFF448XQZ.tsv tsv (differential expression quantifications) 2.0 MB
ENCFF449TUL.bigWig bigWig (minus strand signal of unique reads) 104.4 MB
ENCFF458FCR.tsv tsv (transcript quantifications) 27.5 MB
ENCFF458WDB.bam bam (transcriptome alignments) 9.4 GB
ENCFF480VCI.bam bam (alignments) 6.6 GB
ENCFF496ETZ.bam bam (alignments) 6.7 GB
ENCFF496OAU.bigWig bigWig (minus strand signal of unique reads) 75.9 MB
ENCFF498RFT.tsv tsv (gene quantifications) 9.1 MB
ENCFF503BGP.bigWig bigWig (plus strand signal of all reads) 119.5 MB
ENCFF503WBQ.tar tar (differential splicing quantifications) 17.5 MB
ENCFF504ZPT.bigWig bigWig (plus strand signal of all reads) 86.1 MB
ENCFF511MWR.bigWig bigWig (minus strand signal of all reads) 119.7 MB
ENCFF542CVB.bigWig bigWig (plus strand signal of unique reads) 77.5 MB
ENCFF544QYX.bam bam (alignments) 8.0 GB
ENCFF548XXZ.tsv tsv (transcript quantifications) 27.4 MB
ENCFF557IPZ.fastq fastq (reads) 4.3 GB
ENCFF559NBG.bam bam (transcriptome alignments) 10.6 GB
ENCFF567IQE.tsv tsv (gene quantifications) 9.5 MB
ENCFF578BPH.bigWig bigWig (minus strand signal of unique reads) 70.6 MB
ENCFF586FWB.bigWig bigWig (minus strand signal of all reads) 85.1 MB
ENCFF600CJL.bigWig bigWig (plus strand signal of unique reads) 107.6 MB
ENCFF616JMA.bigWig bigWig (plus strand signal of all reads) 106.4 MB
ENCFF621JTU.bigWig bigWig (plus strand signal of unique reads) 99.7 MB
ENCFF627QWL.bigWig bigWig (minus strand signal of all reads) 76.7 MB
ENCFF637TBA.bigWig bigWig (minus strand signal of unique reads) 105.3 MB
ENCFF643MYC.bigWig bigWig (minus strand signal of all reads) 119.8 MB
ENCFF650MRS.bigWig bigWig (minus strand signal of all reads) 105.1 MB
ENCFF661YWY.tsv tsv (transcript quantifications) 29.9 MB
ENCFF683XDQ.tsv tsv (differential expression quantifications) 4.4 MB
ENCFF711BJQ.bigWig bigWig (plus strand signal of unique reads) 78.0 MB
ENCFF717LRG.tsv tsv (gene quantifications) 9.1 MB
ENCFF728FTM.tsv tsv (differential expression quantifications) 1.8 MB
ENCFF740BYP.bigWig bigWig (plus strand signal of unique reads) 72.2 MB
ENCFF744TBL.bigWig bigWig (minus strand signal of all reads) 107.1 MB
ENCFF764KSI.bigWig bigWig (minus strand signal of all reads) 118.1 MB
ENCFF775RQD.bam bam (alignments) 4.7 GB
ENCFF776BJJ.tsv tsv (transcript quantifications) 24.9 MB
ENCFF776JRQ.bam bam (transcriptome alignments) 5.5 GB
ENCFF797TZS.tsv tsv (differential expression quantifications) 5.7 MB
ENCFF811JZQ.tsv tsv (transcript quantifications) 24.9 MB
ENCFF811VOW.bigWig bigWig (plus strand signal of all reads) 77.9 MB
ENCFF812YXW.bam bam (transcriptome alignments) 5.5 GB
ENCFF831QBW.bam bam (alignments) 4.0 GB
ENCFF843YCD.bigWig bigWig (minus strand signal of unique reads) 67.3 MB
ENCFF845CPE.bigWig bigWig (plus strand signal of unique reads) 100.1 MB
ENCFF851UDY.bigWig bigWig (minus strand signal of all reads) 86.7 MB
ENCFF855FAZ.tsv tsv (transcript quantifications) 29.8 MB
ENCFF878KZL.bigWig bigWig (plus strand signal of all reads) 121.2 MB
ENCFF882UPZ.bigWig bigWig (minus strand signal of unique reads) 97.7 MB
ENCFF906QUO.bigWig bigWig (minus strand signal of unique reads) 105.1 MB
ENCFF920UTR.bigWig bigWig (plus strand signal of unique reads) 98.3 MB
ENCFF937YFU.tar tar (differential splicing quantifications) 6.3 MB
ENCFF962RET.bigWig bigWig (plus strand signal of all reads) 108.9 MB
ENCFF987AJL.bigWig bigWig (plus strand signal of all reads) 87.7 MB
ENCSR422JMS ENCSR · via encode_api

RNA-seq on HepG2 cells treated with an shRNA knockdown against SSRP1. (SSRP1_BGHLV27)

Homo sapiens

92 data files
FileTypeSize
ENCFF025FNC.bigWig bigWig (minus strand signal of unique reads) 90.8 MB
ENCFF029OCS.bigWig bigWig (plus strand signal of unique reads) 76.2 MB
ENCFF030RWD.bigWig bigWig (minus strand signal of unique reads) 95.2 MB
ENCFF041KZY.bigWig bigWig (plus strand signal of unique reads) 92.5 MB
ENCFF073NAB.bam bam (alignments) 4.9 GB
ENCFF075NOK.tsv tsv (gene quantifications) 9.5 MB
ENCFF075OMW.bigWig bigWig (plus strand signal of all reads) 99.9 MB
ENCFF081NWX.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF089WNT.bigWig bigWig (minus strand signal of unique reads) 82.1 MB
ENCFF098SYC.bigWig bigWig (minus strand signal of unique reads) 94.0 MB
ENCFF107BNO.bam bam (alignments) 4.0 GB
ENCFF112CEV.bigWig bigWig (minus strand signal of unique reads) 88.5 MB
ENCFF112GBX.tsv tsv (transcript quantifications) 29.9 MB
ENCFF128TSX.bigWig bigWig (plus strand signal of unique reads) 79.0 MB
ENCFF166QDV.bigWig bigWig (minus strand signal of all reads) 85.3 MB
ENCFF173IMV.bam bam (alignments) 4.7 GB
ENCFF178CUK.bigWig bigWig (plus strand signal of all reads) 107.3 MB
ENCFF213EJN.tsv tsv (transcript quantifications) 27.4 MB
ENCFF218LFY.tsv tsv (gene quantifications) 9.1 MB
ENCFF220WVI.bam bam (alignments) 6.6 GB
ENCFF221MVV.bigWig bigWig (plus strand signal of unique reads) 83.7 MB
ENCFF235EVU.bigWig bigWig (plus strand signal of all reads) 106.3 MB
ENCFF238HCL.bigWig bigWig (plus strand signal of all reads) 91.3 MB
ENCFF273DZA.bigWig bigWig (minus strand signal of unique reads) 94.1 MB
ENCFF274MRI.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF286DGD.bam bam (alignments) 5.2 GB
ENCFF286WVL.tar tar (differential splicing quantifications) 4.3 MB
ENCFF303YEH.bigWig bigWig (plus strand signal of all reads) 92.5 MB
ENCFF307UUZ.bam bam (alignments) 5.2 GB
ENCFF310CFZ.bam bam (alignments) 6.6 GB
ENCFF321ZBU.bam bam (transcriptome alignments) 6.5 GB
ENCFF328LUG.bigWig bigWig (minus strand signal of all reads) 106.1 MB
ENCFF332GZC.tsv tsv (transcript quantifications) 27.3 MB
ENCFF342QBA.tar tar (differential splicing quantifications) 16.6 MB
ENCFF344WFL.tsv tsv (transcript quantifications) 25.3 MB
ENCFF349PPH.bigWig bigWig (plus strand signal of unique reads) 82.6 MB
ENCFF353ORB.bigWig bigWig (plus strand signal of all reads) 107.3 MB
ENCFF360AXM.bigWig bigWig (minus strand signal of all reads) 96.5 MB
ENCFF374AAE.bigWig bigWig (minus strand signal of all reads) 105.3 MB
ENCFF414RFB.bigWig bigWig (minus strand signal of unique reads) 78.3 MB
ENCFF415CQM.bigWig bigWig (minus strand signal of unique reads) 81.0 MB
ENCFF426VOB.bigWig bigWig (minus strand signal of all reads) 81.6 MB
ENCFF448LNM.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF458ESO.bigWig bigWig (plus strand signal of all reads) 96.9 MB
ENCFF464ULQ.bam bam (alignments) 5.3 GB
ENCFF493GBA.bigWig bigWig (plus strand signal of all reads) 82.5 MB
ENCFF497PQH.bigWig bigWig (plus strand signal of unique reads) 97.3 MB
ENCFF502YFG.bam bam (alignments) 3.8 GB
ENCFF507KUM.bigWig bigWig (minus strand signal of unique reads) 81.0 MB
ENCFF507SBR.tsv tsv (gene quantifications) 9.1 MB
ENCFF536MGQ.tsv tsv (transcript quantifications) 29.8 MB
ENCFF552RBM.fastq fastq (reads) 3.8 GB
ENCFF556VZM.bigWig bigWig (minus strand signal of unique reads) 74.6 MB
ENCFF561DXQ.bam bam (transcriptome alignments) 9.0 GB
ENCFF590MHJ.bigWig bigWig (plus strand signal of all reads) 97.7 MB
ENCFF628EEO.bigWig bigWig (minus strand signal of all reads) 91.5 MB
ENCFF640GXS.bigWig bigWig (minus strand signal of unique reads) 91.4 MB
ENCFF641CTO.tar tar (differential splicing quantifications) 3.6 MB
ENCFF678RTS.bam bam (alignments) 3.8 GB
ENCFF687DVP.bigWig bigWig (plus strand signal of unique reads) 93.4 MB
ENCFF696NRF.bigWig bigWig (plus strand signal of unique reads) 82.6 MB
ENCFF698GMY.bigWig bigWig (plus strand signal of all reads) 92.5 MB
ENCFF720OKH.tsv tsv (gene quantifications) 9.5 MB
ENCFF725DUK.tsv tsv (gene quantifications) 10.4 MB
ENCFF749BWX.tsv tsv (transcript quantifications) 24.9 MB
ENCFF755SFS.fastq fastq (reads) 3.8 GB
ENCFF785XGV.bigWig bigWig (plus strand signal of all reads) 86.4 MB
ENCFF811ZUG.bigWig bigWig (plus strand signal of unique reads) 95.9 MB
ENCFF814EUR.bam bam (alignments) 6.3 GB
ENCFF832CYD.bam bam (transcriptome alignments) 10.3 GB
ENCFF837NMN.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF855FZY.bigWig bigWig (minus strand signal of all reads) 91.5 MB
ENCFF867WZL.bigWig bigWig (plus strand signal of unique reads) 90.5 MB
ENCFF870SLG.bigWig bigWig (plus strand signal of all reads) 82.6 MB
ENCFF872NFP.bigWig bigWig (minus strand signal of all reads) 90.5 MB
ENCFF887BCE.fastq fastq (reads) 2.8 GB
ENCFF904EUA.bigWig bigWig (minus strand signal of all reads) 106.1 MB
ENCFF909PVH.tsv tsv (transcript quantifications) 25.4 MB
ENCFF920DDG.bigWig bigWig (minus strand signal of unique reads) 77.5 MB
ENCFF920TOW.bam bam (alignments) 4.9 GB
ENCFF929NAT.bam bam (transcriptome alignments) 9.1 GB
ENCFF937EDX.bigWig bigWig (plus strand signal of unique reads) 96.0 MB
ENCFF938YTS.tsv tsv (transcript quantifications) 25.0 MB
ENCFF944CLZ.bigWig bigWig (minus strand signal of all reads) 95.6 MB
ENCFF952XRC.bigWig bigWig (plus strand signal of unique reads) 79.9 MB
ENCFF955SVI.bam bam (transcriptome alignments) 7.4 GB
ENCFF968VSU.tsv tsv (differential expression quantifications) 4.3 MB
ENCFF969GRN.fastq fastq (reads) 2.7 GB
ENCFF971KRP.bigWig bigWig (minus strand signal of all reads) 81.6 MB
ENCFF980YYH.bigWig bigWig (minus strand signal of all reads) 98.6 MB
ENCFF988CHC.tsv tsv (gene quantifications) 10.4 MB
ENCFF995BIX.bam bam (transcriptome alignments) 6.5 GB
ENCSR205ZCE ENCSR · via encode_api

eCLIP control experiment on HepG2 against IGF2BP1

Homo sapiens

8 data files
FileTypeSize
ENCFF032OPL.bam bam (alignments); assembly: GRCh38 231.3 MB
ENCFF162ZOL.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 9.3 MB
ENCFF207TDD.fastq fastq (reads) 419.1 MB
ENCFF389YBN.fastq fastq (reads) 405.0 MB
ENCFF444KWD.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 9.5 MB
ENCFF546UAX.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 9.3 MB
ENCFF699NWF.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 9.1 MB
ENCFF772RXA.bam bam (alignments); assembly: hg19 227.6 MB
ENCSR170XQH ENCSR · via encode_api

eCLIP control experiment on K562 against XRN2

Homo sapiens

8 data files
FileTypeSize
ENCFF210MRS.bigWig bigWig (plus strand signal of unique reads) 16.1 MB
ENCFF449OPY.fastq fastq (reads) 365.1 MB
ENCFF624VHF.fastq fastq (reads) 381.9 MB
ENCFF651CUS.bam bam (alignments) 297.7 MB
ENCFF668YFI.bigWig bigWig (minus strand signal of unique reads) 15.5 MB
ENCFF768FYM.bam bam (alignments) 298.2 MB
ENCFF883VSG.bigWig bigWig (plus strand signal of unique reads) 16.1 MB
ENCFF888NSV.bigWig bigWig (minus strand signal of unique reads) 15.5 MB
ENCSR249WNK ENCSR · via encode_api

eCLIP control experiment on K562 against CPSF6

Homo sapiens

8 data files
FileTypeSize
ENCFF523STK.fastq fastq (reads) 368.2 MB
ENCFF727WOV.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 12.7 MB
ENCFF747XJC.bam bam (alignments); assembly: hg19 230.5 MB
ENCFF751WNT.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 13.1 MB
ENCFF753TBE.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 13.2 MB
ENCFF842FFD.bam bam (alignments); assembly: GRCh38 231.2 MB
ENCFF887HZS.fastq fastq (reads) 379.5 MB
ENCFF969QLN.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 12.6 MB
ENCSR556FNN ENCSR · via encode_api

RNA-seq on K562 cells treated with an shRNA knockdown against PPIL4. (PPIL4_BGKLV24_B)

Homo sapiens

92 data files
FileTypeSize
ENCFF007URG.tsv tsv (gene quantifications) 9.1 MB
ENCFF008ZMD.bigWig bigWig (plus strand signal of unique reads) 80.5 MB
ENCFF044DCF.bigWig bigWig (minus strand signal of unique reads) 76.9 MB
ENCFF061BIY.tsv tsv (differential expression quantifications) 4.3 MB
ENCFF065NTF.bigWig bigWig (minus strand signal of unique reads) 80.1 MB
ENCFF068SFV.bigWig bigWig (minus strand signal of unique reads) 89.2 MB
ENCFF071JGO.tsv tsv (transcript quantifications) 25.0 MB
ENCFF085VCF.bam bam (alignments) 7.0 GB
ENCFF089MXA.tar tar (differential splicing quantifications) 4.3 MB
ENCFF098TSI.bigWig bigWig (plus strand signal of unique reads) 82.1 MB
ENCFF104TRY.bigWig bigWig (minus strand signal of all reads) 84.3 MB
ENCFF107EAT.bigWig bigWig (minus strand signal of unique reads) 87.6 MB
ENCFF112TLA.bigWig bigWig (minus strand signal of unique reads) 89.0 MB
ENCFF120IKT.bam bam (transcriptome alignments) 8.8 GB
ENCFF127LOC.bigWig bigWig (plus strand signal of unique reads) 89.5 MB
ENCFF144QRE.fastq fastq (reads) 4.0 GB
ENCFF160UBI.bigWig bigWig (plus strand signal of all reads) 103.1 MB
ENCFF176GNF.bigWig bigWig (minus strand signal of all reads) 86.3 MB
ENCFF178PQF.tsv tsv (gene quantifications) 10.4 MB
ENCFF179TPZ.bigWig bigWig (minus strand signal of all reads) 100.0 MB
ENCFF187BBL.bigWig bigWig (minus strand signal of all reads) 88.8 MB
ENCFF195LHK.fastq fastq (reads) 4.0 GB
ENCFF195QPY.bam bam (transcriptome alignments) 7.8 GB
ENCFF240FKK.tsv tsv (transcript quantifications) 29.9 MB
ENCFF248BBQ.bigWig bigWig (plus strand signal of unique reads) 91.3 MB
ENCFF255VJU.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF257RXH.bigWig bigWig (minus strand signal of all reads) 88.6 MB
ENCFF263CIO.bigWig bigWig (minus strand signal of all reads) 86.2 MB
ENCFF264EKX.bam bam (alignments) 5.9 GB
ENCFF293WAY.tar tar (differential splicing quantifications) 15.8 MB
ENCFF294DTE.bam bam (alignments) 7.1 GB
ENCFF320DKI.bigWig bigWig (plus strand signal of all reads) 90.2 MB
ENCFF323GDW.bigWig bigWig (minus strand signal of unique reads) 78.4 MB
ENCFF334PBM.bigWig bigWig (plus strand signal of unique reads) 83.7 MB
ENCFF342WEO.bigWig bigWig (plus strand signal of all reads) 99.3 MB
ENCFF357KGH.bam bam (alignments) 5.8 GB
ENCFF367CNO.tsv tsv (gene quantifications) 9.5 MB
ENCFF368VLO.bigWig bigWig (minus strand signal of unique reads) 81.9 MB
ENCFF389BTK.bigWig bigWig (plus strand signal of unique reads) 83.5 MB
ENCFF390HIJ.tar tar (differential splicing quantifications) 3.5 MB
ENCFF391RMZ.tsv tsv (differential expression quantifications) 2.0 MB
ENCFF392KKZ.bigWig bigWig (plus strand signal of all reads) 87.8 MB
ENCFF394TYG.bigWig bigWig (minus strand signal of all reads) 100.0 MB
ENCFF402XOQ.bam bam (transcriptome alignments) 8.9 GB
ENCFF405SVQ.tsv tsv (transcript quantifications) 25.0 MB
ENCFF413XCP.bigWig bigWig (minus strand signal of unique reads) 87.4 MB
ENCFF415WQB.bigWig bigWig (plus strand signal of all reads) 103.1 MB
ENCFF418IVO.tsv tsv (transcript quantifications) 29.9 MB
ENCFF419GSC.bigWig bigWig (minus strand signal of all reads) 90.9 MB
ENCFF422UYX.bigWig bigWig (minus strand signal of all reads) 98.1 MB
ENCFF424FQN.bigWig bigWig (minus strand signal of unique reads) 86.4 MB
ENCFF439ZKE.bam bam (transcriptome alignments) 7.9 GB
ENCFF449PCH.fastq fastq (reads) 4.0 GB
ENCFF450QEU.bigWig bigWig (minus strand signal of all reads) 102.0 MB
ENCFF479ZDA.bigWig bigWig (minus strand signal of all reads) 102.0 MB
ENCFF508AOJ.bam bam (alignments) 5.8 GB
ENCFF568IZS.bigWig bigWig (plus strand signal of all reads) 92.5 MB
ENCFF568OMM.bigWig bigWig (plus strand signal of unique reads) 78.9 MB
ENCFF614UDR.tsv tsv (transcript quantifications) 27.4 MB
ENCFF615MUQ.bam bam (alignments) 7.2 GB
ENCFF643MIX.tsv tsv (transcript quantifications) 25.4 MB
ENCFF645HSO.bigWig bigWig (plus strand signal of all reads) 87.4 MB
ENCFF654RWF.bam bam (alignments) 5.9 GB
ENCFF658ODE.tsv tsv (transcript quantifications) 27.3 MB
ENCFF666FXJ.bam bam (alignments) 5.9 GB
ENCFF673CUU.bigWig bigWig (plus strand signal of all reads) 85.9 MB
ENCFF678STS.tsv tsv (differential expression quantifications) 1.8 MB
ENCFF691UUM.bigWig bigWig (plus strand signal of all reads) 101.2 MB
ENCFF691WRJ.bigWig bigWig (plus strand signal of unique reads) 90.9 MB
ENCFF700TTY.bam bam (alignments) 7.1 GB
ENCFF701XYO.tsv tsv (gene quantifications) 9.5 MB
ENCFF703ZAF.tsv tsv (gene quantifications) 9.1 MB
ENCFF711OKY.bigWig bigWig (plus strand signal of all reads) 102.1 MB
ENCFF733UOH.bam bam (transcriptome alignments) 7.9 GB
ENCFF760NEK.bigWig bigWig (minus strand signal of unique reads) 80.3 MB
ENCFF763SXY.tsv tsv (transcript quantifications) 25.4 MB
ENCFF803GOB.bigWig bigWig (minus strand signal of all reads) 100.9 MB
ENCFF805KGC.bam bam (alignments) 7.0 GB
ENCFF831JRO.bigWig bigWig (plus strand signal of all reads) 101.2 MB
ENCFF832OVN.bam bam (alignments) 5.8 GB
ENCFF842XIK.tsv tsv (gene quantifications) 10.4 MB
ENCFF858BQA.bigWig bigWig (minus strand signal of unique reads) 87.9 MB
ENCFF877DFI.bigWig bigWig (minus strand signal of unique reads) 81.5 MB
ENCFF895VWZ.bigWig bigWig (plus strand signal of unique reads) 88.5 MB
ENCFF920YLJ.bigWig bigWig (plus strand signal of unique reads) 89.8 MB
ENCFF930DET.bigWig bigWig (plus strand signal of unique reads) 89.3 MB
ENCFF938ZIO.tsv tsv (differential expression quantifications) 2.8 MB
ENCFF950LGA.bam bam (transcriptome alignments) 7.8 GB
ENCFF961KOX.bam bam (alignments) 7.2 GB
ENCFF971ULO.bigWig bigWig (plus strand signal of unique reads) 82.0 MB
ENCFF981ZVY.fastq fastq (reads) 4.0 GB
ENCFF998JDV.bigWig bigWig (plus strand signal of all reads) 89.8 MB
ENCSR018ZUE ENCSR · via encode_api

eCLIP experiment on HepG2 against FKBP4

Homo sapiens

36 data files
FileTypeSize
ENCFF006UHG.bigBed bigBed (peaks) 1.4 MB
ENCFF017NNY.bigBed bigBed (peaks) 334.6 KB
ENCFF035UHD.bam bam (alignments) 113.1 MB
ENCFF048HXO.bigWig bigWig (minus strand signal of unique reads) 10.3 MB
ENCFF068KHY.bed bed (peaks) 117.1 KB
ENCFF073OON.bigBed bigBed (peaks) 1.4 MB
ENCFF096DJH.bigBed bigBed (peaks) 952.6 KB
ENCFF134QII.bed bed (peaks) 345.6 KB
ENCFF141QHH.bam bam (alignments) 166.6 MB
ENCFF214SWU.fastq fastq (reads) 222.6 MB
ENCFF249FBZ.bam bam (alignments) 168.4 MB
ENCFF331RXS.bigBed bigBed (peaks) 530.2 KB
ENCFF374GKD.bed bed (peaks) 28.7 KB
ENCFF401RMG.bigWig bigWig (minus strand signal of unique reads) 5.9 MB
ENCFF415AKY.bed bed (peaks) 225.5 KB
ENCFF437VVV.fastq fastq (reads) 233.7 MB
ENCFF447CKJ.bigWig bigWig (plus strand signal of unique reads) 6.2 MB
ENCFF458VOM.bigBed bigBed (peaks) 721.7 KB
ENCFF487PAA.fastq fastq (reads) 221.7 MB
ENCFF493KJV.bigWig bigWig (plus strand signal of unique reads) 10.7 MB
ENCFF518MXG.bigBed bigBed (peaks) 1.3 MB
ENCFF521RNZ.bigBed bigBed (peaks) 984.8 KB
ENCFF546BPY.bigWig bigWig (minus strand signal of unique reads) 10.2 MB
ENCFF585PKG.bed bed (peaks) 847.8 KB
ENCFF704SMP.bigWig bigWig (minus strand signal of unique reads) 5.9 MB
ENCFF768JXM.bigWig bigWig (plus strand signal of unique reads) 6.1 MB
ENCFF802VWZ.bam bam (alignments) 111.7 MB
ENCFF808SPL.bigBed bigBed (peaks) 229.7 KB
ENCFF814MSM.bed bed (peaks) 521.1 KB
ENCFF821LAJ.bigWig bigWig (plus strand signal of unique reads) 10.8 MB
ENCFF841KIH.bed bed (peaks) 81.3 KB
ENCFF949BFD.bed bed (peaks) 845.1 KB
ENCFF957AOZ.bed bed (peaks) 28.7 KB
ENCFF975CKG.fastq fastq (reads) 209.7 MB
ENCFF977KIJ.bigBed bigBed (peaks) 955.7 KB
ENCFF993XGD.bed bed (peaks) 523.1 KB
ENCSR661ICQ ENCSR · via encode_api

eCLIP experiment on K562 against PUM2

Homo sapiens

36 data files
FileTypeSize
ENCFF041KJT.fastq fastq (reads) 454.9 MB
ENCFF079UZP.bigWig bigWig (minus strand signal of unique reads) 13.4 MB
ENCFF091HXE.bed bed (peaks) 942.4 KB
ENCFF133DNM.fastq fastq (reads) 421.6 MB
ENCFF133NMP.bigWig bigWig (plus strand signal of unique reads) 13.7 MB
ENCFF141SVY.bed bed (peaks) 1.2 MB
ENCFF177VQI.bam bam (alignments) 113.4 MB
ENCFF223ACT.bigBed bigBed (peaks) 2.4 MB
ENCFF231WHF.bam bam (alignments) 108.1 MB
ENCFF262JRE.bed bed (peaks) 1.2 MB
ENCFF280ONP.bam bam (alignments) 218.7 MB
ENCFF284AUN.bigBed bigBed (peaks) 670.1 KB
ENCFF285IAZ.bigBed bigBed (peaks) 2.5 MB
ENCFF345UFC.bigBed bigBed (peaks) 1.4 MB
ENCFF372VPV.bed bed (peaks) 918.7 KB
ENCFF406SXD.bigWig bigWig (plus strand signal of unique reads) 5.9 MB
ENCFF440FWO.bed bed (peaks) 305.6 KB
ENCFF446GYQ.bed bed (peaks) 273.2 KB
ENCFF452BKL.bigWig bigWig (minus strand signal of unique reads) 5.5 MB
ENCFF462SCV.fastq fastq (reads) 451.3 MB
ENCFF657MOM.bigWig bigWig (minus strand signal of unique reads) 13.2 MB
ENCFF662CVN.bigBed bigBed (peaks) 1.6 MB
ENCFF673PJB.bigBed bigBed (peaks) 1.6 MB
ENCFF730GJX.bed bed (peaks) 650.7 KB
ENCFF730KQX.bigWig bigWig (plus strand signal of unique reads) 13.9 MB
ENCFF732EQX.bam bam (alignments) 212.5 MB
ENCFF767LWE.bed bed (peaks) 133.7 KB
ENCFF769SCB.bigWig bigWig (plus strand signal of unique reads) 5.7 MB
ENCFF862WPA.bigBed bigBed (peaks) 2.0 MB
ENCFF870FHW.bigBed bigBed (peaks) 2.2 MB
ENCFF880MWQ.bed bed (peaks) 127.5 KB
ENCFF891PQB.bed bed (peaks) 632.2 KB
ENCFF902VHV.bigWig bigWig (minus strand signal of unique reads) 5.6 MB
ENCFF952WJW.bigBed bigBed (peaks) 1.2 MB
ENCFF956TOZ.fastq fastq (reads) 422.3 MB
ENCFF980IAB.bigBed bigBed (peaks) 688.9 KB
ENCSR828ZID ENCSR · via encode_api

eCLIP experiment on HepG2 against HNRNPK

Homo sapiens

36 data files
FileTypeSize
ENCFF016HQT.fastq fastq (reads) 211.8 MB
ENCFF025QVR.bed bed (peaks) 572.5 KB
ENCFF052YOQ.bigBed bigBed (peaks) 3.1 MB
ENCFF073VAO.bigWig bigWig (minus strand signal of unique reads) 16.2 MB
ENCFF078NBU.bigWig bigWig (plus strand signal of unique reads) 16.9 MB
ENCFF118YMC.fastq fastq (reads) 212.0 MB
ENCFF120AAW.fastq fastq (reads) 208.3 MB
ENCFF147EIS.bigWig bigWig (plus strand signal of unique reads) 16.9 MB
ENCFF159LAW.bigBed bigBed (peaks) 3.0 MB
ENCFF184UOA.bed bed (peaks) 705.9 KB
ENCFF198ISB.bam bam (alignments) 311.0 MB
ENCFF234AEU.bigWig bigWig (minus strand signal of unique reads) 18.1 MB
ENCFF271ASO.bed bed (peaks) 287.1 KB
ENCFF288MWL.bed bed (peaks) 1.5 MB
ENCFF303CFU.bigBed bigBed (peaks) 2.2 MB
ENCFF329QRR.bam bam (alignments) 290.7 MB
ENCFF391DOL.bigBed bigBed (peaks) 1.1 MB
ENCFF404YRY.bigWig bigWig (plus strand signal of unique reads) 18.9 MB
ENCFF424UDJ.bigBed bigBed (peaks) 660.9 KB
ENCFF457EXY.bam bam (alignments) 310.2 MB
ENCFF457MFA.bigBed bigBed (peaks) 531.3 KB
ENCFF494CVZ.bigWig bigWig (minus strand signal of unique reads) 16.2 MB
ENCFF553XCL.bam bam (alignments) 289.5 MB
ENCFF556EBT.bed bed (peaks) 1.5 MB
ENCFF578NZU.bigBed bigBed (peaks) 2.8 MB
ENCFF608OWA.bigWig bigWig (minus strand signal of unique reads) 18.0 MB
ENCFF649FBV.bigBed bigBed (peaks) 1.3 MB
ENCFF689WRD.bigWig bigWig (plus strand signal of unique reads) 18.8 MB
ENCFF754XAQ.bed bed (peaks) 1.7 MB
ENCFF855CPQ.bed bed (peaks) 120.4 KB
ENCFF861DAK.bigBed bigBed (peaks) 3.5 MB
ENCFF877KBJ.bed bed (peaks) 1.7 MB
ENCFF887CFI.bigBed bigBed (peaks) 3.5 MB
ENCFF924WZQ.fastq fastq (reads) 212.3 MB
ENCFF993NVI.bed bed (peaks) 121.4 KB
ENCFF994SDB.bed bed (peaks) 220.7 KB
ENCSR268ETU ENCSR · via encode_api

eCLIP experiment on K562 against HNRNPK

Homo sapiens

36 data files
FileTypeSize
ENCFF049KXT.bam bam (alignments) 262.8 MB
ENCFF071EBB.bigWig bigWig (plus strand signal of unique reads) 8.4 MB
ENCFF079MYZ.bed bed (peaks) 794.9 KB
ENCFF087BUT.bed bed (peaks) 411.4 KB
ENCFF088TEB.bigBed bigBed (peaks) 1.8 MB
ENCFF095TLF.bigBed bigBed (peaks) 853.9 KB
ENCFF131UIL.bigWig bigWig (minus strand signal of unique reads) 8.0 MB
ENCFF156HRW.bigWig bigWig (plus strand signal of unique reads) 14.5 MB
ENCFF169OLG.fastq fastq (reads) 249.5 MB
ENCFF228HUK.fastq fastq (reads) 206.2 MB
ENCFF241AOZ.bed bed (peaks) 800.3 KB
ENCFF302VJK.bigBed bigBed (peaks) 452.3 KB
ENCFF335HRO.fastq fastq (reads) 154.7 MB
ENCFF353ZBK.bigWig bigWig (plus strand signal of unique reads) 8.4 MB
ENCFF378VYJ.bigWig bigWig (plus strand signal of unique reads) 14.5 MB
ENCFF405ESF.bam bam (alignments) 263.2 MB
ENCFF448SCQ.bed bed (peaks) 62.9 KB
ENCFF449ANI.bigBed bigBed (peaks) 1.8 MB
ENCFF508MTN.bigBed bigBed (peaks) 1.7 MB
ENCFF525XIM.bam bam (alignments) 179.1 MB
ENCFF562ZXX.bigWig bigWig (minus strand signal of unique reads) 13.8 MB
ENCFF592UVI.bigBed bigBed (peaks) 1.4 MB
ENCFF636QVD.bigBed bigBed (peaks) 1.4 MB
ENCFF655RBH.bed bed (peaks) 161.3 KB
ENCFF737WBM.bigBed bigBed (peaks) 934.6 KB
ENCFF769QNG.bed bed (peaks) 1.0 MB
ENCFF818LIK.bigBed bigBed (peaks) 1.8 MB
ENCFF824IDO.bed bed (peaks) 1.1 MB
ENCFF825KDQ.bigBed bigBed (peaks) 352.5 KB
ENCFF887DHR.bed bed (peaks) 475.6 KB
ENCFF890SLG.bigWig bigWig (minus strand signal of unique reads) 8.0 MB
ENCFF894NKS.bam bam (alignments) 178.5 MB
ENCFF900FEK.fastq fastq (reads) 177.8 MB
ENCFF918XJQ.bed bed (peaks) 62.3 KB
ENCFF926VXD.bigWig bigWig (minus strand signal of unique reads) 13.7 MB
ENCFF951RJR.bed bed (peaks) 181.1 KB
ENCSR366YOG ENCSR · via encode_api

eCLIP experiment on K562 against QKI

Homo sapiens

36 data files
FileTypeSize
ENCFF012WMS.bam bam (alignments) 240.1 MB
ENCFF027CBV.bed bed (peaks) 51.6 KB
ENCFF048ERC.bigBed bigBed (peaks) 1.6 MB
ENCFF120WPV.fastq fastq (reads) 1.0 GB
ENCFF162USL.bigWig bigWig (plus strand signal of unique reads) 4.7 MB
ENCFF190XSX.bed bed (peaks) 611.8 KB
ENCFF210STZ.bigBed bigBed (peaks) 806.2 KB
ENCFF216ZHP.bigBed bigBed (peaks) 678.0 KB
ENCFF303OZO.bigWig bigWig (plus strand signal of unique reads) 11.2 MB
ENCFF310GLH.bigWig bigWig (minus strand signal of unique reads) 10.8 MB
ENCFF342CVS.bed bed (peaks) 158.2 KB
ENCFF364FBK.bigBed bigBed (peaks) 1.5 MB
ENCFF372LCI.bam bam (alignments) 111.1 MB
ENCFF379OMP.bed bed (peaks) 144.8 KB
ENCFF475LRP.fastq fastq (reads) 642.2 MB
ENCFF494AKD.bam bam (alignments) 245.4 MB
ENCFF534JXG.bed bed (peaks) 622.8 KB
ENCFF640OEG.bigWig bigWig (minus strand signal of unique reads) 4.5 MB
ENCFF678IFH.bigWig bigWig (minus strand signal of unique reads) 4.4 MB
ENCFF698BKX.bam bam (alignments) 108.8 MB
ENCFF715YVP.bigWig bigWig (plus strand signal of unique reads) 11.0 MB
ENCFF735OFZ.bigWig bigWig (minus strand signal of unique reads) 10.7 MB
ENCFF765IFG.bigBed bigBed (peaks) 1.6 MB
ENCFF767WUU.bed bed (peaks) 937.3 KB
ENCFF776ISN.fastq fastq (reads) 646.0 MB
ENCFF786UOW.bed bed (peaks) 50.5 KB
ENCFF791PUD.bigBed bigBed (peaks) 337.7 KB
ENCFF815DJH.bigWig bigWig (plus strand signal of unique reads) 4.6 MB
ENCFF823SQL.fastq fastq (reads) 1.0 GB
ENCFF828YIT.bed bed (peaks) 376.4 KB
ENCFF872LOO.bigBed bigBed (peaks) 1.2 MB
ENCFF899FGS.bed bed (peaks) 370.2 KB
ENCFF938WRT.bigBed bigBed (peaks) 1.6 MB
ENCFF963AMI.bed bed (peaks) 953.7 KB
ENCFF992KRR.bigBed bigBed (peaks) 363.8 KB
ENCFF992VMD.bigBed bigBed (peaks) 1.2 MB
ENCSR943LIB ENCSR · via encode_api

RNA-seq on K562 cells treated with an shRNA knockdown against SNRNP200. (SNRNP200_BGKLV28)

Homo sapiens

92 data files
FileTypeSize
ENCFF053RHM.bigWig bigWig (minus strand signal of all reads) 88.5 MB
ENCFF061PZW.bigWig bigWig (minus strand signal of all reads) 83.5 MB
ENCFF068UOC.bigWig bigWig (plus strand signal of unique reads) 96.1 MB
ENCFF070ZUW.bigWig bigWig (minus strand signal of all reads) 86.2 MB
ENCFF093QSK.bigWig bigWig (minus strand signal of all reads) 96.1 MB
ENCFF094LLL.bigWig bigWig (plus strand signal of unique reads) 91.3 MB
ENCFF102ZYO.bigWig bigWig (plus strand signal of unique reads) 82.4 MB
ENCFF113ECO.tsv tsv (transcript quantifications) 27.4 MB
ENCFF113ZKN.bigWig bigWig (minus strand signal of all reads) 105.9 MB
ENCFF141XEA.bigWig bigWig (plus strand signal of all reads) 85.3 MB
ENCFF167AFA.bam bam (alignments) 3.4 GB
ENCFF168LLJ.bigWig bigWig (minus strand signal of all reads) 105.9 MB
ENCFF174DQB.tsv tsv (gene quantifications) 9.5 MB
ENCFF178KFL.bigWig bigWig (minus strand signal of unique reads) 80.1 MB
ENCFF179PHL.bam bam (alignments) 3.5 GB
ENCFF193JKK.tsv tsv (transcript quantifications) 25.0 MB
ENCFF193SZZ.bam bam (alignments) 4.4 GB
ENCFF196IGD.tsv tsv (gene quantifications) 9.1 MB
ENCFF205JPY.bam bam (transcriptome alignments) 6.5 GB
ENCFF213YXM.tsv tsv (transcript quantifications) 25.4 MB
ENCFF221DWK.bigWig bigWig (plus strand signal of unique reads) 87.7 MB
ENCFF222UTO.bigWig bigWig (minus strand signal of unique reads) 94.0 MB
ENCFF242RWK.bam bam (alignments) 4.4 GB
ENCFF246XIT.bam bam (alignments) 4.4 GB
ENCFF250IMQ.bigWig bigWig (plus strand signal of all reads) 107.5 MB
ENCFF255LPS.bigWig bigWig (plus strand signal of all reads) 90.4 MB
ENCFF262RXC.bigWig bigWig (minus strand signal of unique reads) 86.1 MB
ENCFF271TOP.bigWig bigWig (minus strand signal of unique reads) 93.0 MB
ENCFF277WXH.tsv tsv (differential expression quantifications) 2.0 MB
ENCFF302GBI.tsv tsv (transcript quantifications) 29.9 MB
ENCFF311VRT.bam bam (alignments) 4.4 GB
ENCFF323SKJ.bigWig bigWig (plus strand signal of unique reads) 89.8 MB
ENCFF326BGS.bigWig bigWig (minus strand signal of all reads) 91.4 MB
ENCFF345GNS.bigWig bigWig (minus strand signal of unique reads) 84.7 MB
ENCFF380MVC.bigWig bigWig (minus strand signal of all reads) 93.5 MB
ENCFF387ORK.tar tar (differential splicing quantifications) 4.1 MB
ENCFF393JFS.tsv tsv (gene quantifications) 10.4 MB
ENCFF408VYW.bigWig bigWig (plus strand signal of unique reads) 96.5 MB
ENCFF410JCQ.fastq fastq (reads) 2.4 GB
ENCFF411YQS.bigWig bigWig (plus strand signal of unique reads) 88.2 MB
ENCFF418LFB.bigWig bigWig (plus strand signal of all reads) 107.5 MB
ENCFF422RRV.bigWig bigWig (plus strand signal of all reads) 93.6 MB
ENCFF440QAZ.bigWig bigWig (minus strand signal of unique reads) 80.0 MB
ENCFF453PIO.bigWig bigWig (minus strand signal of unique reads) 84.2 MB
ENCFF458DGE.bigWig bigWig (plus strand signal of all reads) 99.0 MB
ENCFF472YNK.bigWig bigWig (plus strand signal of all reads) 87.5 MB
ENCFF498LXT.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF504AKR.bam bam (transcriptome alignments) 5.2 GB
ENCFF506FEF.bigWig bigWig (minus strand signal of unique reads) 85.3 MB
ENCFF516SST.bam bam (transcriptome alignments) 5.9 GB
ENCFF535SXN.tsv tsv (transcript quantifications) 25.4 MB
ENCFF576HUM.bigWig bigWig (minus strand signal of unique reads) 93.6 MB
ENCFF604KQV.bigWig bigWig (minus strand signal of unique reads) 77.0 MB
ENCFF607VLV.tsv tsv (differential expression quantifications) 5.7 MB
ENCFF612WOK.bigWig bigWig (plus strand signal of all reads) 98.9 MB
ENCFF615TEA.bigWig bigWig (minus strand signal of unique reads) 88.8 MB
ENCFF621KLR.bam bam (alignments) 5.4 GB
ENCFF640DPY.bigWig bigWig (plus strand signal of all reads) 106.7 MB
ENCFF645PUQ.bigWig bigWig (minus strand signal of unique reads) 87.6 MB
ENCFF645TIA.tsv tsv (gene quantifications) 10.4 MB
ENCFF676WWN.fastq fastq (reads) 3.2 GB
ENCFF682ZQP.fastq fastq (reads) 3.1 GB
ENCFF748LIL.bigWig bigWig (plus strand signal of unique reads) 81.9 MB
ENCFF750XVK.bam bam (alignments) 5.5 GB
ENCFF753RXE.bam bam (alignments) 4.4 GB
ENCFF757KZE.bam bam (alignments) 4.2 GB
ENCFF770FHC.tsv tsv (differential expression quantifications) 4.3 MB
ENCFF781HUU.tsv tsv (transcript quantifications) 24.9 MB
ENCFF786QUC.tsv tsv (transcript quantifications) 27.4 MB
ENCFF792KJI.bam bam (transcriptome alignments) 5.2 GB
ENCFF800JQI.fastq fastq (reads) 2.5 GB
ENCFF802RRM.bigWig bigWig (minus strand signal of all reads) 97.5 MB
ENCFF805QDI.bam bam (transcriptome alignments) 6.5 GB
ENCFF805WMN.tar tar (differential splicing quantifications) 15.2 MB
ENCFF846AKD.bigWig bigWig (plus strand signal of unique reads) 95.7 MB
ENCFF849ZZT.bigWig bigWig (plus strand signal of unique reads) 79.3 MB
ENCFF867EPW.tar tar (differential splicing quantifications) 5.4 MB
ENCFF871GYM.bigWig bigWig (minus strand signal of all reads) 96.7 MB
ENCFF877FIQ.tsv tsv (gene quantifications) 9.1 MB
ENCFF882JCW.bam bam (alignments) 5.5 GB
ENCFF883PEE.bam bam (alignments) 3.4 GB
ENCFF894IBU.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF897IAV.tsv tsv (gene quantifications) 9.5 MB
ENCFF905GGT.tsv tsv (transcript quantifications) 29.9 MB
ENCFF921KPO.bigWig bigWig (plus strand signal of unique reads) 86.8 MB
ENCFF931FXY.bigWig bigWig (plus strand signal of unique reads) 86.8 MB
ENCFF960VYE.bigWig bigWig (minus strand signal of all reads) 97.5 MB
ENCFF961BTO.bigWig bigWig (minus strand signal of all reads) 104.8 MB
ENCFF968CDE.bigWig bigWig (plus strand signal of all reads) 98.9 MB
ENCFF973JTZ.bigWig bigWig (plus strand signal of all reads) 97.8 MB
ENCFF987TXI.bigWig bigWig (plus strand signal of all reads) 95.0 MB
ENCFF991ZDL.bam bam (transcriptome alignments) 7.4 GB
ENCSR809ISU ENCSR · via encode_api

RNA-seq on K562 cells treated with an shRNA knockdown against AKAP8L. (AKAP8L_BGKLV32)

Homo sapiens

92 data files
FileTypeSize
ENCFF017QOH.bam bam (alignments) 6.5 GB
ENCFF022IHR.bigWig bigWig (minus strand signal of unique reads) 100.5 MB
ENCFF026CRA.tsv tsv (transcript quantifications) 29.9 MB
ENCFF026MSF.bigWig bigWig (plus strand signal of all reads) 106.4 MB
ENCFF039ZHI.bigWig bigWig (minus strand signal of unique reads) 93.2 MB
ENCFF040KEY.bam bam (transcriptome alignments) 8.3 GB
ENCFF063TOE.tar tar (differential splicing quantifications) 4.3 MB
ENCFF104CES.bigWig bigWig (minus strand signal of all reads) 112.1 MB
ENCFF104MIQ.bigWig bigWig (minus strand signal of all reads) 100.0 MB
ENCFF108CXJ.bam bam (transcriptome alignments) 7.3 GB
ENCFF109WHN.bigWig bigWig (plus strand signal of unique reads) 95.8 MB
ENCFF110QUU.tar tar (differential splicing quantifications) 5.7 MB
ENCFF116ULW.bam bam (alignments) 5.5 GB
ENCFF117ALM.tsv tsv (gene quantifications) 10.4 MB
ENCFF134YUL.tsv tsv (gene quantifications) 9.1 MB
ENCFF146BTC.fastq fastq (reads) 3.6 GB
ENCFF149KGN.bam bam (transcriptome alignments) 7.4 GB
ENCFF163YJX.tsv tsv (transcript quantifications) 24.9 MB
ENCFF188LND.tsv tsv (differential expression quantifications) 2.0 MB
ENCFF218ICC.bigWig bigWig (plus strand signal of unique reads) 95.4 MB
ENCFF258ZZZ.bam bam (alignments) 6.8 GB
ENCFF259ZHA.bigWig bigWig (plus strand signal of unique reads) 106.5 MB
ENCFF260EPK.bam bam (transcriptome alignments) 7.5 GB
ENCFF260RTO.bigWig bigWig (minus strand signal of unique reads) 99.2 MB
ENCFF281RQI.bigWig bigWig (minus strand signal of unique reads) 103.4 MB
ENCFF293UCV.tsv tsv (transcript quantifications) 25.4 MB
ENCFF305AHD.bigWig bigWig (plus strand signal of unique reads) 106.4 MB
ENCFF317MGL.bigWig bigWig (minus strand signal of unique reads) 98.7 MB
ENCFF321WXT.bam bam (alignments) 6.7 GB
ENCFF325VFM.bigWig bigWig (minus strand signal of unique reads) 103.4 MB
ENCFF341KYP.tsv tsv (transcript quantifications) 29.9 MB
ENCFF355TMN.bam bam (transcriptome alignments) 8.4 GB
ENCFF359JQP.bigWig bigWig (plus strand signal of unique reads) 93.3 MB
ENCFF367BEP.bigWig bigWig (minus strand signal of all reads) 111.8 MB
ENCFF371SPX.bam bam (alignments) 6.9 GB
ENCFF374OAK.bigWig bigWig (minus strand signal of unique reads) 102.6 MB
ENCFF376ANK.bigWig bigWig (plus strand signal of unique reads) 102.5 MB
ENCFF393LTX.bam bam (alignments) 6.8 GB
ENCFF397GQC.tsv tsv (transcript quantifications) 27.4 MB
ENCFF413BLJ.bigWig bigWig (minus strand signal of all reads) 115.9 MB
ENCFF415PEZ.bigWig bigWig (plus strand signal of all reads) 114.4 MB
ENCFF425EAI.bam bam (alignments) 5.4 GB
ENCFF425XLT.tsv tsv (differential expression quantifications) 4.5 MB
ENCFF440JUN.bigWig bigWig (minus strand signal of unique reads) 90.2 MB
ENCFF465DOR.tsv tsv (transcript quantifications) 24.9 MB
ENCFF479JGT.bigWig bigWig (plus strand signal of all reads) 104.4 MB
ENCFF489VEL.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF490TZK.tsv tsv (gene quantifications) 9.1 MB
ENCFF509LND.bigWig bigWig (minus strand signal of unique reads) 95.3 MB
ENCFF523KNZ.fastq fastq (reads) 3.5 GB
ENCFF525AMB.bigWig bigWig (minus strand signal of all reads) 112.1 MB
ENCFF529IOA.bigWig bigWig (plus strand signal of all reads) 114.4 MB
ENCFF534USF.tsv tsv (differential expression quantifications) 3.0 MB
ENCFF539QUS.bigWig bigWig (minus strand signal of unique reads) 92.5 MB
ENCFF552JHZ.bigWig bigWig (minus strand signal of all reads) 101.1 MB
ENCFF561DEY.fastq fastq (reads) 3.7 GB
ENCFF573EGY.bigWig bigWig (plus strand signal of all reads) 103.8 MB
ENCFF580HDH.bam bam (alignments) 5.6 GB
ENCFF591NUX.bigWig bigWig (plus strand signal of unique reads) 96.4 MB
ENCFF600ZMP.tsv tsv (gene quantifications) 10.4 MB
ENCFF609SET.bam bam (alignments) 5.4 GB
ENCFF650ZQT.bigWig bigWig (plus strand signal of all reads) 99.6 MB
ENCFF666YKB.bigWig bigWig (plus strand signal of all reads) 114.3 MB
ENCFF681TOD.tsv tsv (gene quantifications) 9.5 MB
ENCFF688NMC.bigWig bigWig (minus strand signal of all reads) 114.5 MB
ENCFF714EAL.bigWig bigWig (plus strand signal of unique reads) 101.7 MB
ENCFF729UWP.bigWig bigWig (plus strand signal of all reads) 116.9 MB
ENCFF768OBY.bigWig bigWig (plus strand signal of unique reads) 105.9 MB
ENCFF775GFE.tar tar (differential splicing quantifications) 16.9 MB
ENCFF783HUW.bigWig bigWig (plus strand signal of all reads) 100.1 MB
ENCFF788ILU.bam bam (alignments) 6.9 GB
ENCFF794IIO.bigWig bigWig (minus strand signal of all reads) 98.0 MB
ENCFF815BZP.bigWig bigWig (plus strand signal of unique reads) 103.6 MB
ENCFF824QIQ.tsv tsv (transcript quantifications) 25.3 MB
ENCFF835UYU.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF838ILT.tsv tsv (transcript quantifications) 27.4 MB
ENCFF841DJQ.bigWig bigWig (plus strand signal of unique reads) 98.4 MB
ENCFF841MRC.bam bam (transcriptome alignments) 7.3 GB
ENCFF855MVL.bam bam (alignments) 5.5 GB
ENCFF880SWQ.bigWig bigWig (minus strand signal of all reads) 103.8 MB
ENCFF890OMS.bigWig bigWig (plus strand signal of unique reads) 97.3 MB
ENCFF896YMC.bigWig bigWig (minus strand signal of unique reads) 94.5 MB
ENCFF898WYD.bigWig bigWig (minus strand signal of unique reads) 92.5 MB
ENCFF901EMD.tsv tsv (gene quantifications) 9.5 MB
ENCFF906KPN.bam bam (alignments) 5.5 GB
ENCFF916GVS.bigWig bigWig (minus strand signal of all reads) 115.9 MB
ENCFF927KFU.fastq fastq (reads) 3.6 GB
ENCFF943SRM.bigWig bigWig (plus strand signal of all reads) 118.2 MB
ENCFF951NIZ.bigWig bigWig (plus strand signal of all reads) 102.8 MB
ENCFF963YPK.bigWig bigWig (minus strand signal of all reads) 96.8 MB
ENCFF971BQQ.bigWig bigWig (minus strand signal of all reads) 102.2 MB
ENCFF989ISK.bigWig bigWig (plus strand signal of all reads) 118.2 MB
ENCSR808FBR ENCSR · via encode_api

RNA-seq on HepG2 cells treated with an shRNA knockdown against DDX5. (DDX5_BGHLV30)

Homo sapiens

92 data files
FileTypeSize
ENCFF014DWF.bam bam (transcriptome alignments) 7.3 GB
ENCFF043YRJ.tsv tsv (gene quantifications) 9.1 MB
ENCFF044QXW.tsv tsv (gene quantifications) 9.5 MB
ENCFF045JUS.bigWig bigWig (plus strand signal of all reads) 88.1 MB
ENCFF053QJM.bigWig bigWig (minus strand signal of unique reads) 77.3 MB
ENCFF072ANJ.fastq fastq (reads) 3.6 GB
ENCFF077DGD.bigWig bigWig (minus strand signal of all reads) 88.2 MB
ENCFF117IIL.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF129GHS.tsv tsv (differential expression quantifications) 5.5 MB
ENCFF131HCZ.tar tar (differential splicing quantifications) 16.5 MB
ENCFF137ZXF.bigWig bigWig (plus strand signal of all reads) 87.7 MB
ENCFF139YAT.tsv tsv (transcript quantifications) 29.9 MB
ENCFF185XTF.bigWig bigWig (minus strand signal of unique reads) 69.6 MB
ENCFF243LRE.bam bam (alignments) 5.5 GB
ENCFF245SBQ.bigWig bigWig (minus strand signal of all reads) 86.6 MB
ENCFF265FBS.bam bam (alignments) 5.6 GB
ENCFF265TUS.bigWig bigWig (plus strand signal of unique reads) 79.3 MB
ENCFF279YPI.bigWig bigWig (plus strand signal of unique reads) 80.8 MB
ENCFF282XUM.bigWig bigWig (minus strand signal of unique reads) 67.0 MB
ENCFF290HIA.bam bam (alignments) 5.8 GB
ENCFF312JTI.tsv tsv (transcript quantifications) 25.4 MB
ENCFF313DLB.bigWig bigWig (minus strand signal of all reads) 71.9 MB
ENCFF322AMD.bigWig bigWig (minus strand signal of all reads) 74.8 MB
ENCFF335AOD.bigWig bigWig (plus strand signal of all reads) 89.6 MB
ENCFF338MAD.bigWig bigWig (plus strand signal of unique reads) 78.9 MB
ENCFF346MUW.bigWig bigWig (minus strand signal of unique reads) 77.0 MB
ENCFF346PMB.bigWig bigWig (plus strand signal of unique reads) 69.9 MB
ENCFF358MKB.bigWig bigWig (minus strand signal of unique reads) 78.3 MB
ENCFF381MEY.bigWig bigWig (plus strand signal of all reads) 73.7 MB
ENCFF390PKO.tsv tsv (transcript quantifications) 25.0 MB
ENCFF399IQT.bigWig bigWig (minus strand signal of all reads) 86.4 MB
ENCFF415WHO.bigWig bigWig (plus strand signal of unique reads) 68.6 MB
ENCFF435DYK.bam bam (alignments) 6.9 GB
ENCFF452YBM.bigWig bigWig (minus strand signal of all reads) 88.9 MB
ENCFF467XXK.bigWig bigWig (plus strand signal of unique reads) 72.6 MB
ENCFF474FTQ.bigWig bigWig (plus strand signal of unique reads) 71.1 MB
ENCFF475PYV.tsv tsv (transcript quantifications) 25.4 MB
ENCFF500ZRE.bam bam (alignments) 5.8 GB
ENCFF512CQX.bam bam (alignments) 7.0 GB
ENCFF529JKC.tsv tsv (transcript quantifications) 27.4 MB
ENCFF531YDN.tar tar (differential splicing quantifications) 3.2 MB
ENCFF532VRM.tsv tsv (gene quantifications) 10.4 MB
ENCFF554RSF.bigWig bigWig (minus strand signal of unique reads) 78.7 MB
ENCFF570BIP.tsv tsv (differential expression quantifications) 2.0 MB
ENCFF582HUX.bigWig bigWig (plus strand signal of all reads) 88.1 MB
ENCFF586JKY.bigWig bigWig (plus strand signal of all reads) 77.3 MB
ENCFF587XWV.bigWig bigWig (plus strand signal of unique reads) 80.4 MB
ENCFF600OAT.tsv tsv (gene quantifications) 10.4 MB
ENCFF602XJS.bigWig bigWig (plus strand signal of all reads) 75.3 MB
ENCFF604VBS.tsv tsv (gene quantifications) 9.1 MB
ENCFF610GRG.bam bam (transcriptome alignments) 7.3 GB
ENCFF617IDA.bigWig bigWig (minus strand signal of unique reads) 77.9 MB
ENCFF633GUT.tsv tsv (differential expression quantifications) 4.3 MB
ENCFF640RUU.bigWig bigWig (minus strand signal of all reads) 72.1 MB
ENCFF650XQK.bigWig bigWig (minus strand signal of all reads) 73.8 MB
ENCFF656QYX.bigWig bigWig (plus strand signal of all reads) 90.5 MB
ENCFF657SDV.bigWig bigWig (minus strand signal of all reads) 73.3 MB
ENCFF675SGQ.tsv tsv (transcript quantifications) 29.9 MB
ENCFF702RPU.bigWig bigWig (plus strand signal of unique reads) 79.2 MB
ENCFF706SZL.bigWig bigWig (plus strand signal of all reads) 73.4 MB
ENCFF710XKB.bam bam (alignments) 6.7 GB
ENCFF717LFC.bam bam (alignments) 7.0 GB
ENCFF734CYQ.tar tar (differential splicing quantifications) 3.9 MB
ENCFF755MFC.bam bam (transcriptome alignments) 8.2 GB
ENCFF759DZU.bigWig bigWig (minus strand signal of all reads) 86.6 MB
ENCFF760ARJ.fastq fastq (reads) 3.8 GB
ENCFF760KMR.bam bam (alignments) 5.5 GB
ENCFF765JZC.bigWig bigWig (minus strand signal of unique reads) 69.2 MB
ENCFF767JHS.bam bam (transcriptome alignments) 7.9 GB
ENCFF774OZE.fastq fastq (reads) 3.6 GB
ENCFF776JKV.bigWig bigWig (plus strand signal of unique reads) 80.0 MB
ENCFF809RQU.bigWig bigWig (plus strand signal of all reads) 76.2 MB
ENCFF813CCQ.fastq fastq (reads) 3.8 GB
ENCFF823NTC.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF826YBH.bam bam (transcriptome alignments) 8.9 GB
ENCFF834BBD.bam bam (alignments) 6.7 GB
ENCFF847CYO.bam bam (alignments) 5.8 GB
ENCFF849LKV.bigWig bigWig (plus strand signal of unique reads) 69.0 MB
ENCFF851CVE.bigWig bigWig (plus strand signal of all reads) 90.6 MB
ENCFF862ZLW.bigWig bigWig (minus strand signal of all reads) 75.6 MB
ENCFF873JIN.bigWig bigWig (minus strand signal of unique reads) 68.2 MB
ENCFF874OCW.bigWig bigWig (plus strand signal of unique reads) 71.5 MB
ENCFF880TSO.bigWig bigWig (minus strand signal of all reads) 88.9 MB
ENCFF897TUY.bigWig bigWig (minus strand signal of unique reads) 70.5 MB
ENCFF904OQB.bigWig bigWig (plus strand signal of all reads) 74.6 MB
ENCFF918CUB.bigWig bigWig (minus strand signal of unique reads) 77.4 MB
ENCFF934UTY.tsv tsv (transcript quantifications) 27.4 MB
ENCFF957EQR.bigWig bigWig (minus strand signal of unique reads) 66.5 MB
ENCFF966IRH.tsv tsv (transcript quantifications) 25.0 MB
ENCFF980OCO.bam bam (alignments) 6.6 GB
ENCFF989YMJ.tsv tsv (gene quantifications) 9.5 MB
ENCFF997VVR.bam bam (transcriptome alignments) 7.9 GB
ENCSR110ZYD ENCSR · via encode_api

shRNA knockdown against SAFB2 in HepG2 cells followed by RNA-seq. (SAFB2-57-BGHLV20)

Homo sapiens

92 data files
FileTypeSize
ENCFF006CLF.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF064JLR.bigWig bigWig (plus strand signal of all reads) 66.5 MB
ENCFF094AKB.tsv tsv (differential expression quantifications) 4.3 MB
ENCFF098KAG.bigWig bigWig (plus strand signal of unique reads) 57.5 MB
ENCFF098KQW.tsv tsv (gene quantifications) 9.1 MB
ENCFF105SZB.bam bam (alignments) 3.8 GB
ENCFF117ZFN.bam bam (alignments) 3.7 GB
ENCFF118BPV.bam bam (transcriptome alignments) 5.3 GB
ENCFF118IOZ.bam bam (transcriptome alignments) 4.9 GB
ENCFF120BWH.bigWig bigWig (minus strand signal of all reads) 65.4 MB
ENCFF121TTJ.bam bam (transcriptome alignments) 4.7 GB
ENCFF139IPN.tsv tsv (gene quantifications) 10.4 MB
ENCFF150IMI.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF157DTV.tar tar (differential splicing quantifications) 14.7 MB
ENCFF164XBY.bam bam (alignments) 4.0 GB
ENCFF191SOY.bigWig bigWig (minus strand signal of unique reads) 58.7 MB
ENCFF202NLI.bigWig bigWig (minus strand signal of unique reads) 54.1 MB
ENCFF204KPI.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF205GZW.bam bam (alignments) 3.3 GB
ENCFF219LZR.bigWig bigWig (plus strand signal of all reads) 61.8 MB
ENCFF224KAW.bigWig bigWig (plus strand signal of unique reads) 55.8 MB
ENCFF228XEZ.bigWig bigWig (minus strand signal of all reads) 65.3 MB
ENCFF237KFM.bigWig bigWig (minus strand signal of unique reads) 59.3 MB
ENCFF240FSR.bigWig bigWig (minus strand signal of all reads) 58.0 MB
ENCFF242CNB.bigWig bigWig (minus strand signal of all reads) 65.1 MB
ENCFF250KUC.tsv tsv (transcript quantifications) 25.3 MB
ENCFF259FBV.bigWig bigWig (minus strand signal of unique reads) 55.8 MB
ENCFF270LJI.bigWig bigWig (minus strand signal of all reads) 57.7 MB
ENCFF271EOT.bigWig bigWig (plus strand signal of all reads) 61.0 MB
ENCFF279RZC.bigWig bigWig (minus strand signal of all reads) 64.6 MB
ENCFF287QRU.bigWig bigWig (plus strand signal of unique reads) 60.3 MB
ENCFF290LFM.bigWig bigWig (minus strand signal of all reads) 60.6 MB
ENCFF290RRP.bigWig bigWig (plus strand signal of unique reads) 60.4 MB
ENCFF293RMC.bigWig bigWig (plus strand signal of all reads) 59.1 MB
ENCFF301WWE.tsv tsv (gene quantifications) 10.4 MB
ENCFF303LEN.bigWig bigWig (minus strand signal of all reads) 59.7 MB
ENCFF315PQM.bam bam (transcriptome alignments) 5.5 GB
ENCFF315UOY.bigWig bigWig (minus strand signal of unique reads) 53.6 MB
ENCFF328DPG.bam bam (transcriptome alignments) 4.7 GB
ENCFF328QIG.tsv tsv (transcript quantifications) 27.3 MB
ENCFF330DKU.bigWig bigWig (plus strand signal of unique reads) 61.0 MB
ENCFF350DUF.bam bam (alignments) 3.4 GB
ENCFF362DSU.bigWig bigWig (plus strand signal of all reads) 60.9 MB
ENCFF363GEA.bigWig bigWig (plus strand signal of all reads) 66.7 MB
ENCFF363UQY.bigWig bigWig (plus strand signal of all reads) 66.4 MB
ENCFF369VWE.bigWig bigWig (plus strand signal of unique reads) 57.4 MB
ENCFF385EUL.tsv tsv (transcript quantifications) 25.3 MB
ENCFF388MSB.tsv tsv (transcript quantifications) 27.3 MB
ENCFF403DFM.bam bam (alignments) 3.8 GB
ENCFF405XDB.fastq fastq (reads) 2.0 GB
ENCFF413AJD.bigWig bigWig (plus strand signal of all reads) 59.4 MB
ENCFF417QBD.bigWig bigWig (minus strand signal of unique reads) 55.8 MB
ENCFF418EZI.bigWig bigWig (minus strand signal of unique reads) 55.7 MB
ENCFF427MYV.bam bam (alignments) 3.3 GB
ENCFF434WKD.bam bam (alignments) 3.2 GB
ENCFF437OYV.fastq fastq (reads) 2.1 GB
ENCFF482MIF.bigWig bigWig (plus strand signal of unique reads) 57.3 MB
ENCFF483TEC.bam bam (alignments) 3.3 GB
ENCFF504BDA.bam bam (transcriptome alignments) 4.9 GB
ENCFF515FUV.bigWig bigWig (plus strand signal of all reads) 60.2 MB
ENCFF522DNJ.bam bam (alignments) 4.0 GB
ENCFF525BHH.tsv tsv (gene quantifications) 9.1 MB
ENCFF557GAE.tsv tsv (transcript quantifications) 24.9 MB
ENCFF576FRM.bigWig bigWig (minus strand signal of all reads) 59.0 MB
ENCFF577ZWL.bigWig bigWig (plus strand signal of unique reads) 55.2 MB
ENCFF578LUJ.fastq fastq (reads) 2.1 GB
ENCFF579VFJ.bigWig bigWig (minus strand signal of all reads) 65.1 MB
ENCFF597VFP.bigWig bigWig (minus strand signal of unique reads) 59.2 MB
ENCFF625DDR.fastq fastq (reads) 2.2 GB
ENCFF651YII.bigWig bigWig (minus strand signal of unique reads) 59.3 MB
ENCFF672ILH.bigWig bigWig (plus strand signal of all reads) 65.8 MB
ENCFF703EJB.tsv tsv (transcript quantifications) 24.9 MB
ENCFF704COM.tar tar (differential splicing quantifications) 2.8 MB
ENCFF724BJK.bigWig bigWig (minus strand signal of unique reads) 58.6 MB
ENCFF745VNE.bigWig bigWig (plus strand signal of all reads) 66.7 MB
ENCFF749VFG.tsv tsv (gene quantifications) 9.4 MB
ENCFF760PTJ.bigWig bigWig (plus strand signal of unique reads) 60.3 MB
ENCFF766COJ.tsv tsv (transcript quantifications) 29.8 MB
ENCFF773MHS.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF783LCK.bigWig bigWig (minus strand signal of all reads) 65.4 MB
ENCFF800NAJ.bigWig bigWig (plus strand signal of unique reads) 60.8 MB
ENCFF808NMH.bigWig bigWig (plus strand signal of unique reads) 60.8 MB
ENCFF822LYI.bigWig bigWig (plus strand signal of unique reads) 57.1 MB
ENCFF823URF.tsv tsv (gene quantifications) 9.4 MB
ENCFF872PTD.bam bam (alignments) 3.8 GB
ENCFF898SMV.bigWig bigWig (minus strand signal of unique reads) 58.8 MB
ENCFF945NHC.bigWig bigWig (minus strand signal of unique reads) 56.1 MB
ENCFF947SKW.tar tar (differential splicing quantifications) 3.3 MB
ENCFF952UOU.bam bam (alignments) 3.2 GB
ENCFF955KDN.bigWig bigWig (minus strand signal of all reads) 59.7 MB
ENCFF963RHT.bigWig bigWig (plus strand signal of all reads) 66.4 MB
ENCFF965CSK.tsv tsv (transcript quantifications) 29.8 MB
ENCSR566CVD ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) input control experiment of CNOT4 or ZCRB1

1 data file
FileTypeSize
ENCFF421KWK.fastq fastq (reads) 212.3 MB
ENCSR806UCE ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) pulldown experiment against CNOT4

13 data files
FileTypeSize
ENCFF291WEC.tsv tsv (enrichment) 168.0 KB
ENCFF420JBE.tsv tsv (library fraction) 15.2 KB
ENCFF485KVS.tsv tsv (library fraction) 1.1 MB
ENCFF497RAZ.tsv tsv (enrichment) 688.0 KB
ENCFF553OKX.tsv tsv (library fraction) 64.0 KB
ENCFF691NQF.tsv tsv (enrichment) 10.0 KB
ENCFF724TVE.tsv tsv (library fraction) 265.3 KB
ENCFF751TQU.fastq fastq (reads) 340.9 MB
ENCFF763IRH.fastq fastq (reads) 381.5 MB
ENCFF798CEK.fastq fastq (reads) 438.9 MB
ENCFF897BPT.fastq fastq (reads) 256.5 MB
ENCFF935NYJ.tsv tsv (enrichment) 41.0 KB
ENCFF962UIH.fastq fastq (reads) 346.1 MB
ENCSR903NNW ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) input control experiment of RBM47

1 data file
FileTypeSize
ENCFF148TFJ.fastq fastq (reads) 447.4 MB
ENCSR572FFX ENCSR · via encode_api

Control shRNA against no target in K562 cells followed by RNA-seq. (non-target_BGKLV21)

Homo sapiens

84 data files
FileTypeSize
ENCFF023EZN.fastq fastq (reads) 2.2 GB
ENCFF029QIY.fastq fastq (reads) 2.2 GB
ENCFF030JOF.bigWig bigWig (minus strand signal of all reads) 67.0 MB
ENCFF031SPB.bigWig bigWig (plus strand signal of unique reads) 78.8 MB
ENCFF035JPJ.bam bam (alignments) 3.6 GB
ENCFF053UXB.bigWig bigWig (minus strand signal of unique reads) 76.2 MB
ENCFF083VQL.bigWig bigWig (minus strand signal of all reads) 70.5 MB
ENCFF092FUX.bigWig bigWig (minus strand signal of unique reads) 76.6 MB
ENCFF093AAH.bigWig bigWig (plus strand signal of all reads) 71.6 MB
ENCFF104BOO.tsv tsv (gene quantifications) 10.4 MB
ENCFF115TTN.bam bam (alignments) 4.0 GB
ENCFF120BTG.bigWig bigWig (plus strand signal of unique reads) 78.5 MB
ENCFF148ERF.bam bam (alignments) 3.3 GB
ENCFF172JWQ.bigWig bigWig (plus strand signal of all reads) 79.6 MB
ENCFF179BWJ.bigWig bigWig (minus strand signal of unique reads) 77.3 MB
ENCFF182PJQ.bigWig bigWig (plus strand signal of all reads) 79.8 MB
ENCFF184PCB.bigWig bigWig (plus strand signal of all reads) 73.9 MB
ENCFF184VRA.bigWig bigWig (minus strand signal of all reads) 87.6 MB
ENCFF196RJS.tsv tsv (transcript quantifications) 27.3 MB
ENCFF215TIS.bam bam (transcriptome alignments) 5.8 GB
ENCFF217ZSJ.tsv tsv (transcript quantifications) 24.9 MB
ENCFF224BMQ.bigWig bigWig (plus strand signal of unique reads) 67.5 MB
ENCFF226JPW.bigWig bigWig (minus strand signal of unique reads) 69.2 MB
ENCFF229SZK.bigWig bigWig (minus strand signal of all reads) 86.4 MB
ENCFF231HNU.bigWig bigWig (plus strand signal of unique reads) 79.5 MB
ENCFF242JEU.bigWig bigWig (plus strand signal of all reads) 88.9 MB
ENCFF262KHC.bigWig bigWig (plus strand signal of unique reads) 69.2 MB
ENCFF275ZEJ.bam bam (alignments) 3.6 GB
ENCFF281QEY.tsv tsv (gene quantifications) 9.4 MB
ENCFF301VBU.bam bam (alignments) 4.3 GB
ENCFF305OJD.bigWig bigWig (plus strand signal of unique reads) 63.6 MB
ENCFF310XPL.bam bam (alignments) 3.9 GB
ENCFF334IRF.bigWig bigWig (plus strand signal of all reads) 79.1 MB
ENCFF363SGB.bigWig bigWig (minus strand signal of unique reads) 66.7 MB
ENCFF364RAS.bigWig bigWig (minus strand signal of unique reads) 69.9 MB
ENCFF397TSP.tsv tsv (transcript quantifications) 25.3 MB
ENCFF397ZZV.bigWig bigWig (minus strand signal of unique reads) 66.9 MB
ENCFF414TXX.tsv tsv (transcript quantifications) 24.9 MB
ENCFF429UAG.bigWig bigWig (plus strand signal of all reads) 68.5 MB
ENCFF444ZOY.bam bam (transcriptome alignments) 5.1 GB
ENCFF448EGA.bigWig bigWig (minus strand signal of all reads) 72.3 MB
ENCFF459NPU.bigWig bigWig (plus strand signal of all reads) 80.8 MB
ENCFF464MHZ.fastq fastq (reads) 2.0 GB
ENCFF493QRG.bigWig bigWig (plus strand signal of all reads) 87.8 MB
ENCFF507LYF.bam bam (transcriptome alignments) 4.6 GB
ENCFF535SCR.bigWig bigWig (minus strand signal of unique reads) 65.8 MB
ENCFF539VYH.bigWig bigWig (minus strand signal of all reads) 74.0 MB
ENCFF542SGU.bam bam (transcriptome alignments) 5.1 GB
ENCFF560GIH.bam bam (alignments) 4.4 GB
ENCFF561XEM.fastq fastq (reads) 2.5 GB
ENCFF568DGW.bam bam (alignments) 4.0 GB
ENCFF569ISZ.bigWig bigWig (minus strand signal of unique reads) 61.6 MB
ENCFF575HRI.bigWig bigWig (plus strand signal of unique reads) 68.6 MB
ENCFF594XRO.bigWig bigWig (plus strand signal of unique reads) 71.2 MB
ENCFF595PIT.tsv tsv (gene quantifications) 9.1 MB
ENCFF609TFN.bigWig bigWig (plus strand signal of unique reads) 71.8 MB
ENCFF655TJE.tsv tsv (gene quantifications) 10.4 MB
ENCFF664BFN.bigWig bigWig (plus strand signal of all reads) 89.0 MB
ENCFF671NCT.bam bam (alignments) 3.3 GB
ENCFF679WVD.bigWig bigWig (minus strand signal of unique reads) 69.9 MB
ENCFF691JCT.bam bam (alignments) 4.4 GB
ENCFF691LQW.bigWig bigWig (minus strand signal of all reads) 79.1 MB
ENCFF694IHW.tsv tsv (gene quantifications) 9.5 MB
ENCFF719PLT.bam bam (alignments) 3.3 GB
ENCFF722RVB.bigWig bigWig (plus strand signal of all reads) 75.6 MB
ENCFF727FXC.tsv tsv (transcript quantifications) 27.1 MB
ENCFF743PUD.tsv tsv (transcript quantifications) 29.8 MB
ENCFF743XKS.bigWig bigWig (minus strand signal of all reads) 78.4 MB
ENCFF770IMJ.bigWig bigWig (plus strand signal of unique reads) 74.8 MB
ENCFF795CRN.bigWig bigWig (minus strand signal of all reads) 80.4 MB
ENCFF801OTE.tsv tsv (transcript quantifications) 25.3 MB
ENCFF802CAV.bam bam (alignments) 3.7 GB
ENCFF823JUB.bigWig bigWig (minus strand signal of all reads) 87.6 MB
ENCFF834WDE.bigWig bigWig (minus strand signal of unique reads) 72.2 MB
ENCFF847CCA.bigWig bigWig (plus strand signal of unique reads) 74.4 MB
ENCFF851EUV.bam bam (transcriptome alignments) 4.5 GB
ENCFF863EKL.tsv tsv (gene quantifications) 9.1 MB
ENCFF907SXB.bigWig bigWig (plus strand signal of unique reads) 71.7 MB
ENCFF911PEW.bigWig bigWig (minus strand signal of all reads) 77.9 MB
ENCFF919CDD.bigWig bigWig (minus strand signal of all reads) 80.2 MB
ENCFF937AZX.bam bam (transcriptome alignments) 5.1 GB
ENCFF946HMI.bigWig bigWig (plus strand signal of all reads) 80.0 MB
ENCFF987OTS.bigWig bigWig (minus strand signal of unique reads) 72.9 MB
ENCFF994WXQ.tsv tsv (transcript quantifications) 29.8 MB
ENCSR028CRL ENCSR · via encode_api

eCLIP control experiment on K562 against DDX3X

Homo sapiens

8 data files
FileTypeSize
ENCFF006DQH.fastq fastq (reads) 569.2 MB
ENCFF051BYG.bigWig bigWig (minus strand signal of unique reads) 20.4 MB
ENCFF057VZS.bam bam (alignments) 449.3 MB
ENCFF098VCG.bigWig bigWig (plus strand signal of unique reads) 21.3 MB
ENCFF106OWX.bigWig bigWig (plus strand signal of unique reads) 21.1 MB
ENCFF697EJY.bam bam (alignments) 444.6 MB
ENCFF724CMM.bigWig bigWig (minus strand signal of unique reads) 20.7 MB
ENCFF768GAB.fastq fastq (reads) 514.7 MB
ENCSR977GTT ENCSR · via encode_api

eCLIP control experiment on K562 against GNL3

Homo sapiens

8 data files
FileTypeSize
ENCFF419JON.bam bam (alignments) 513.3 MB
ENCFF449DRT.bigWig bigWig (plus strand signal of unique reads) 25.6 MB
ENCFF651VHA.bam bam (alignments) 513.5 MB
ENCFF667ZVM.bigWig bigWig (plus strand signal of unique reads) 25.6 MB
ENCFF720COV.fastq fastq (reads) 807.9 MB
ENCFF832LGA.bigWig bigWig (minus strand signal of unique reads) 24.7 MB
ENCFF892UQR.fastq fastq (reads) 705.5 MB
ENCFF997HAK.bigWig bigWig (minus strand signal of unique reads) 24.7 MB
ENCSR989SMC ENCSR · via encode_api

eCLIP experiment on K562 against FTO

Homo sapiens

34 data files
FileTypeSize
ENCFF016FLK.bigWig bigWig (minus strand signal of unique reads) 13.5 MB
ENCFF018SYJ.bed bed (peaks) 1.2 MB
ENCFF022CWN.bigBed bigBed (peaks) 2.0 MB
ENCFF157EDZ.bigBed bigBed (peaks) 998.3 KB
ENCFF176CHW.bigWig bigWig (plus strand signal of unique reads) 14.0 MB
ENCFF185EIE.fastq fastq (reads) 444.4 MB
ENCFF220KGX.bigWig bigWig (plus strand signal of unique reads) 12.3 MB
ENCFF344ATE.bigWig bigWig (minus strand signal of unique reads) 11.8 MB
ENCFF356RFY.bigBed bigBed (peaks) 2.3 MB
ENCFF374PSI.fastq fastq (reads) 552.0 MB
ENCFF387LVD.bigBed bigBed (peaks) 408.0 KB
ENCFF397ROZ.bigBed bigBed (peaks) 456.0 KB
ENCFF441YAZ.bed bed (peaks) 18.5 KB
ENCFF462TDG.bam bam (alignments) 245.0 MB
ENCFF465VTS.bed bed (peaks) 1.4 MB
ENCFF472SQF.bed bed (peaks) 446.2 KB
ENCFF485IYX.bed bed (peaks) 1.2 MB
ENCFF503NFZ.bigWig bigWig (minus strand signal of unique reads) 13.6 MB
ENCFF507ZJR.bed bed (peaks) 1.4 MB
ENCFF527LQR.bigWig bigWig (plus strand signal of unique reads) 12.1 MB
ENCFF538JIE.bigBed bigBed (peaks) 2.3 MB
ENCFF552FOU.bam bam (alignments) 212.7 MB
ENCFF589ZWA.bam bam (alignments) 250.4 MB
ENCFF618MGU.bigWig bigWig (plus strand signal of unique reads) 14.2 MB
ENCFF624VSA.bed bed (peaks) 157.4 KB
ENCFF636JOT.bigWig bigWig (minus strand signal of unique reads) 11.6 MB
ENCFF642JKU.bigBed bigBed (peaks) 2.0 MB
ENCFF666GWV.bam bam (alignments) 207.4 MB
ENCFF733GGA.bigBed bigBed (peaks) 889.3 KB
ENCFF782STX.bed bed (peaks) 188.8 KB
ENCFF836JKJ.fastq fastq (reads) 469.4 MB
ENCFF877URW.fastq fastq (reads) 521.8 MB
ENCFF907KMM.bed bed (peaks) 523.2 KB
ENCFF924OVC.bed bed (peaks) 18.2 KB
ENCSR775UPS ENCSR · via encode_api

eCLIP control experiment on HepG2 against RBM22

Homo sapiens

8 data files
FileTypeSize
ENCFF091VIF.bam bam (alignments) 658.2 MB
ENCFF124SOF.bigWig bigWig (minus strand signal of unique reads) 30.0 MB
ENCFF273WXJ.fastq fastq (reads) 981.2 MB
ENCFF380JVP.bigWig bigWig (minus strand signal of unique reads) 29.2 MB
ENCFF615UKX.bam bam (alignments) 677.1 MB
ENCFF783CZE.bigWig bigWig (plus strand signal of unique reads) 30.0 MB
ENCFF792JLI.bigWig bigWig (plus strand signal of unique reads) 30.8 MB
ENCFF936IFL.fastq fastq (reads) 904.3 MB
ENCSR595PFU ENCSR · via encode_api

eCLIP control experiment on K562 against NSUN2

Homo sapiens

8 data files
FileTypeSize
ENCFF112GWP.bam bam (alignments) 448.0 MB
ENCFF244XCT.bigWig bigWig (plus strand signal of unique reads) 21.3 MB
ENCFF450ZCN.bigWig bigWig (minus strand signal of unique reads) 21.1 MB
ENCFF489IRY.fastq fastq (reads) 658.6 MB
ENCFF568SAI.bam bam (alignments) 459.0 MB
ENCFF596OTS.bigWig bigWig (plus strand signal of unique reads) 21.8 MB
ENCFF645ZNG.fastq fastq (reads) 570.4 MB
ENCFF840IMU.bigWig bigWig (minus strand signal of unique reads) 20.6 MB
ENCSR461LGW ENCSR · via encode_api

eCLIP control experiment on K562 against UPF1

Homo sapiens

8 data files
FileTypeSize
ENCFF135FSK.bigWig bigWig (plus strand signal of unique reads) 23.7 MB
ENCFF210JCS.fastq fastq (reads) 472.9 MB
ENCFF429YHX.bam bam (alignments) 488.2 MB
ENCFF519MAY.fastq fastq (reads) 409.3 MB
ENCFF612OKV.bigWig bigWig (minus strand signal of unique reads) 22.5 MB
ENCFF735CEZ.bigWig bigWig (plus strand signal of unique reads) 23.3 MB
ENCFF761QQO.bigWig bigWig (minus strand signal of unique reads) 23.0 MB
ENCFF806EIK.bam bam (alignments) 478.4 MB
ENCSR746ZSV ENCSR · via encode_api

eCLIP control experiment on HepG2 against LIN28B

Homo sapiens

8 data files
FileTypeSize
ENCFF244QMW.bam bam (alignments) 204.1 MB
ENCFF255JRN.bigWig bigWig (plus strand signal of unique reads) 10.4 MB
ENCFF314BSZ.bigWig bigWig (plus strand signal of unique reads) 7.7 MB
ENCFF362UUB.bam bam (alignments) 200.5 MB
ENCFF436NGE.fastq fastq (reads) 321.0 MB
ENCFF439RMU.fastq fastq (reads) 353.5 MB
ENCFF708NYA.bigWig bigWig (minus strand signal of unique reads) 10.2 MB
ENCFF782EGF.bigWig bigWig (minus strand signal of unique reads) 10.0 MB
ENCSR745WVZ ENCSR · via encode_api

RNA-seq on K562 cells treated with an shRNA knockdown against PUM1. (PUM1-BGKLV25)

Homo sapiens

92 data files
FileTypeSize
ENCFF013ZYN.bam bam (transcriptome alignments) 10.9 GB
ENCFF014CDT.bam bam (alignments) 7.9 GB
ENCFF033DAM.bigWig bigWig (plus strand signal of all reads) 115.1 MB
ENCFF053SBV.bigWig bigWig (plus strand signal of unique reads) 108.6 MB
ENCFF054DLH.bigWig bigWig (minus strand signal of all reads) 113.0 MB
ENCFF098LMG.bigWig bigWig (minus strand signal of all reads) 138.7 MB
ENCFF164WIM.bigWig bigWig (minus strand signal of unique reads) 114.8 MB
ENCFF165QZZ.fastq fastq (reads) 5.1 GB
ENCFF169MKG.bigWig bigWig (minus strand signal of unique reads) 128.5 MB
ENCFF211IJR.tsv tsv (gene quantifications) 9.1 MB
ENCFF216ZNW.bigWig bigWig (minus strand signal of all reads) 117.0 MB
ENCFF221OVB.bam bam (transcriptome alignments) 16.7 GB
ENCFF227QBJ.tsv tsv (gene quantifications) 9.5 MB
ENCFF236UHC.bam bam (alignments) 12.9 GB
ENCFF240ZKK.bigWig bigWig (minus strand signal of all reads) 130.8 MB
ENCFF262NWN.tsv tsv (transcript quantifications) 27.6 MB
ENCFF267NBF.tsv tsv (transcript quantifications) 25.4 MB
ENCFF299TFX.bigWig bigWig (plus strand signal of unique reads) 106.6 MB
ENCFF350CHJ.bigWig bigWig (minus strand signal of all reads) 160.3 MB
ENCFF358VPW.tsv tsv (gene quantifications) 9.1 MB
ENCFF359TRD.bigWig bigWig (minus strand signal of unique reads) 106.3 MB
ENCFF365GIK.bam bam (alignments) 7.9 GB
ENCFF366CFK.bigWig bigWig (plus strand signal of all reads) 145.3 MB
ENCFF377ULH.bigWig bigWig (plus strand signal of unique reads) 117.3 MB
ENCFF384NVZ.bigWig bigWig (plus strand signal of all reads) 129.9 MB
ENCFF388BQW.bigWig bigWig (minus strand signal of all reads) 128.4 MB
ENCFF392JZH.tar tar (differential splicing quantifications) 7.3 MB
ENCFF400SZZ.bam bam (transcriptome alignments) 11.0 GB
ENCFF413NXL.tsv tsv (transcript quantifications) 25.0 MB
ENCFF423IIV.bigWig bigWig (plus strand signal of all reads) 162.0 MB
ENCFF423WPQ.bigWig bigWig (minus strand signal of all reads) 113.5 MB
ENCFF427TYR.tsv tsv (differential expression quantifications) 4.5 MB
ENCFF434EMX.bigWig bigWig (minus strand signal of all reads) 138.3 MB
ENCFF434WWC.bigWig bigWig (minus strand signal of unique reads) 130.6 MB
ENCFF451TUC.tsv tsv (transcript quantifications) 24.9 MB
ENCFF462ELU.bigWig bigWig (plus strand signal of unique reads) 109.7 MB
ENCFF463YXB.bam bam (alignments) 9.5 GB
ENCFF468TUQ.bam bam (transcriptome alignments) 14.7 GB
ENCFF469BAM.bam bam (transcriptome alignments) 14.8 GB
ENCFF470JNH.bigWig bigWig (minus strand signal of unique reads) 140.6 MB
ENCFF470NYA.bam bam (alignments) 7.9 GB
ENCFF470WBZ.bigWig bigWig (plus strand signal of all reads) 162.1 MB
ENCFF471ICB.bigWig bigWig (plus strand signal of unique reads) 131.9 MB
ENCFF472FDP.tsv tsv (gene quantifications) 10.4 MB
ENCFF478KFL.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF480DIF.tar tar (differential splicing quantifications) 18.8 MB
ENCFF486UPN.bigWig bigWig (minus strand signal of unique reads) 115.1 MB
ENCFF487EBQ.tar tar (differential splicing quantifications) 5.6 MB
ENCFF503FXG.fastq fastq (reads) 6.9 GB
ENCFF509VTY.bigWig bigWig (plus strand signal of unique reads) 143.3 MB
ENCFF522RTK.fastq fastq (reads) 5.1 GB
ENCFF531IUX.bigWig bigWig (minus strand signal of unique reads) 107.1 MB
ENCFF534DRO.tsv tsv (gene quantifications) 9.5 MB
ENCFF535LMU.bigWig bigWig (minus strand signal of all reads) 130.8 MB
ENCFF553SKC.bam bam (alignments) 12.7 GB
ENCFF582JDM.bam bam (alignments) 9.7 GB
ENCFF587KHQ.bigWig bigWig (plus strand signal of unique reads) 133.7 MB
ENCFF600FGO.bigWig bigWig (plus strand signal of all reads) 140.0 MB
ENCFF603OOH.bigWig bigWig (plus strand signal of all reads) 160.0 MB
ENCFF628HHP.bigWig bigWig (minus strand signal of unique reads) 115.4 MB
ENCFF707KLL.bigWig bigWig (minus strand signal of unique reads) 129.6 MB
ENCFF708CCH.tsv tsv (transcript quantifications) 29.9 MB
ENCFF721JAR.bam bam (alignments) 9.7 GB
ENCFF729IAK.bam bam (alignments) 10.6 GB
ENCFF729ZKH.bigWig bigWig (plus strand signal of all reads) 132.3 MB
ENCFF742HXN.bigWig bigWig (plus strand signal of all reads) 141.1 MB
ENCFF743YZY.bigWig bigWig (minus strand signal of unique reads) 141.4 MB
ENCFF752NCP.bigWig bigWig (plus strand signal of unique reads) 132.3 MB
ENCFF783RXJ.bigWig bigWig (plus strand signal of unique reads) 118.0 MB
ENCFF784KZV.bigWig bigWig (plus strand signal of unique reads) 117.8 MB
ENCFF792RXV.bigWig bigWig (plus strand signal of unique reads) 143.6 MB
ENCFF795VTB.tsv tsv (differential expression quantifications) 2.8 MB
ENCFF810TJM.tsv tsv (transcript quantifications) 27.5 MB
ENCFF826RRJ.tsv tsv (transcript quantifications) 25.4 MB
ENCFF826ZAH.bigWig bigWig (minus strand signal of unique reads) 103.7 MB
ENCFF828UHD.bigWig bigWig (plus strand signal of all reads) 114.9 MB
ENCFF842WZJ.bigWig bigWig (plus strand signal of all reads) 132.3 MB
ENCFF880IRC.bam bam (transcriptome alignments) 12.4 GB
ENCFF889ARG.bigWig bigWig (minus strand signal of unique reads) 140.0 MB
ENCFF890GWU.bam bam (alignments) 12.9 GB
ENCFF902KFV.bigWig bigWig (minus strand signal of all reads) 143.0 MB
ENCFF904UTR.bigWig bigWig (minus strand signal of all reads) 160.2 MB
ENCFF909SWB.bam bam (alignments) 10.6 GB
ENCFF916QRY.fastq fastq (reads) 6.9 GB
ENCFF926EAK.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF928XYY.bigWig bigWig (minus strand signal of all reads) 158.2 MB
ENCFF955VKK.bam bam (alignments) 10.6 GB
ENCFF956KGN.tsv tsv (gene quantifications) 10.4 MB
ENCFF966XRJ.bigWig bigWig (plus strand signal of all reads) 119.1 MB
ENCFF971BQP.tsv tsv (differential expression quantifications) 1.8 MB
ENCFF975AJJ.tsv tsv (transcript quantifications) 29.9 MB
ENCFF978IJQ.bigWig bigWig (plus strand signal of unique reads) 144.5 MB
ENCSR227AVS ENCSR · via encode_api

RNA-seq on K562 cells treated with an shRNA knockdown against NOL12. (NOL12-BGKLV25)

Homo sapiens

92 data files
FileTypeSize
ENCFF020YHG.tsv tsv (transcript quantifications) 25.4 MB
ENCFF034JSC.bigWig bigWig (minus strand signal of all reads) 128.2 MB
ENCFF037UHE.bigWig bigWig (minus strand signal of unique reads) 104.3 MB
ENCFF067CGM.bigWig bigWig (minus strand signal of unique reads) 113.8 MB
ENCFF110JSH.tar tar (differential splicing quantifications) 18.6 MB
ENCFF112KMV.bam bam (transcriptome alignments) 12.9 GB
ENCFF119WJE.bigWig bigWig (plus strand signal of all reads) 141.6 MB
ENCFF123MRZ.tsv tsv (transcript quantifications) 24.9 MB
ENCFF123NKP.bigWig bigWig (plus strand signal of all reads) 129.7 MB
ENCFF128QFQ.bigWig bigWig (minus strand signal of all reads) 114.8 MB
ENCFF151GQN.bigWig bigWig (minus strand signal of unique reads) 114.8 MB
ENCFF151HJK.bigWig bigWig (plus strand signal of all reads) 143.4 MB
ENCFF156DGP.bigWig bigWig (minus strand signal of unique reads) 112.7 MB
ENCFF169FHW.fastq fastq (reads) 4.9 GB
ENCFF203WMA.bam bam (alignments) 9.3 GB
ENCFF216KOM.tsv tsv (transcript quantifications) 29.9 MB
ENCFF222GHR.bam bam (alignments) 9.0 GB
ENCFF222PFY.bigWig bigWig (plus strand signal of unique reads) 115.5 MB
ENCFF234MOF.bam bam (alignments) 9.1 GB
ENCFF239OGY.bam bam (alignments) 9.3 GB
ENCFF244WDA.bigWig bigWig (minus strand signal of unique reads) 124.9 MB
ENCFF252CXA.tsv tsv (differential expression quantifications) 1.8 MB
ENCFF257APA.bigWig bigWig (plus strand signal of unique reads) 104.7 MB
ENCFF263VCL.bigWig bigWig (minus strand signal of unique reads) 115.0 MB
ENCFF272EVC.bigWig bigWig (plus strand signal of unique reads) 118.0 MB
ENCFF281TXS.bam bam (alignments) 7.5 GB
ENCFF287DDN.tsv tsv (differential expression quantifications) 4.4 MB
ENCFF294ZBC.tsv tsv (transcript quantifications) 27.5 MB
ENCFF301XPQ.bigWig bigWig (minus strand signal of all reads) 122.5 MB
ENCFF317GGA.bam bam (transcriptome alignments) 12.8 GB
ENCFF344DJH.bigWig bigWig (minus strand signal of unique reads) 124.5 MB
ENCFF346ZPG.bigWig bigWig (plus strand signal of all reads) 116.9 MB
ENCFF359NTS.bigWig bigWig (plus strand signal of unique reads) 127.0 MB
ENCFF367XXJ.bigWig bigWig (plus strand signal of unique reads) 116.5 MB
ENCFF390GUQ.bigWig bigWig (minus strand signal of all reads) 126.5 MB
ENCFF393FVQ.bigWig bigWig (plus strand signal of all reads) 124.9 MB
ENCFF393SIM.fastq fastq (reads) 4.8 GB
ENCFF402DDL.bam bam (alignments) 11.3 GB
ENCFF417WIZ.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF418NVU.bigWig bigWig (plus strand signal of unique reads) 107.1 MB
ENCFF435XLQ.bigWig bigWig (minus strand signal of all reads) 141.7 MB
ENCFF445PMK.tsv tsv (transcript quantifications) 25.0 MB
ENCFF477PLM.bigWig bigWig (plus strand signal of unique reads) 127.7 MB
ENCFF481OAZ.tsv tsv (gene quantifications) 9.5 MB
ENCFF487GQP.fastq fastq (reads) 6.0 GB
ENCFF492ZRK.bigWig bigWig (minus strand signal of all reads) 139.8 MB
ENCFF497FXC.bigWig bigWig (minus strand signal of all reads) 141.7 MB
ENCFF520HNO.bigWig bigWig (plus strand signal of all reads) 113.7 MB
ENCFF521OHO.fastq fastq (reads) 6.0 GB
ENCFF557ECS.bigWig bigWig (plus strand signal of unique reads) 127.6 MB
ENCFF560MKK.bigWig bigWig (plus strand signal of unique reads) 117.3 MB
ENCFF566NYJ.bam bam (alignments) 9.3 GB
ENCFF570YBJ.tsv tsv (transcript quantifications) 25.4 MB
ENCFF572ZEJ.tsv tsv (transcript quantifications) 29.9 MB
ENCFF573RYU.bam bam (alignments) 9.2 GB
ENCFF589NQI.bam bam (transcriptome alignments) 10.2 GB
ENCFF591CXH.bigWig bigWig (minus strand signal of all reads) 128.2 MB
ENCFF621QOZ.bigWig bigWig (plus strand signal of all reads) 128.3 MB
ENCFF625ROY.bigWig bigWig (minus strand signal of all reads) 112.3 MB
ENCFF626QBZ.bigWig bigWig (minus strand signal of unique reads) 104.9 MB
ENCFF628EHZ.bigWig bigWig (minus strand signal of unique reads) 124.2 MB
ENCFF629PSV.bam bam (alignments) 7.6 GB
ENCFF638XNK.bam bam (alignments) 7.5 GB
ENCFF639RWH.bigWig bigWig (minus strand signal of unique reads) 101.8 MB
ENCFF665RWM.tsv tsv (gene quantifications) 9.5 MB
ENCFF696UVD.bigWig bigWig (plus strand signal of all reads) 143.4 MB
ENCFF700FOS.tsv tsv (differential expression quantifications) 2.0 MB
ENCFF707WHJ.bigWig bigWig (plus strand signal of unique reads) 116.6 MB
ENCFF713ZMQ.bam bam (alignments) 11.3 GB
ENCFF723CBA.bam bam (alignments) 11.0 GB
ENCFF730DVM.bam bam (transcriptome alignments) 10.1 GB
ENCFF748OTY.bam bam (transcriptome alignments) 14.5 GB
ENCFF753FIC.bigWig bigWig (plus strand signal of all reads) 112.9 MB
ENCFF757HGN.bigWig bigWig (minus strand signal of all reads) 110.8 MB
ENCFF782JVI.tsv tsv (transcript quantifications) 27.6 MB
ENCFF818MDZ.bigWig bigWig (minus strand signal of all reads) 126.6 MB
ENCFF819SOL.bigWig bigWig (plus strand signal of all reads) 125.1 MB
ENCFF824EQL.bam bam (transcriptome alignments) 11.5 GB
ENCFF830PQW.tar tar (differential splicing quantifications) 7.2 MB
ENCFF835MPQ.tsv tsv (gene quantifications) 9.1 MB
ENCFF849MET.tsv tsv (differential expression quantifications) 2.8 MB
ENCFF863MNM.tsv tsv (gene quantifications) 9.1 MB
ENCFF887SXN.bigWig bigWig (plus strand signal of unique reads) 106.9 MB
ENCFF900KDW.bigWig bigWig (minus strand signal of unique reads) 113.5 MB
ENCFF921MVZ.tsv tsv (gene quantifications) 10.4 MB
ENCFF937OUG.bigWig bigWig (plus strand signal of unique reads) 115.3 MB
ENCFF938TMS.bigWig bigWig (minus strand signal of unique reads) 112.9 MB
ENCFF939EMC.tsv tsv (gene quantifications) 10.4 MB
ENCFF942WEA.bigWig bigWig (plus strand signal of all reads) 128.8 MB
ENCFF968EJP.tar tar (differential splicing quantifications) 5.4 MB
ENCFF985FRF.bigWig bigWig (plus strand signal of all reads) 129.7 MB
ENCFF999AJB.bigWig bigWig (minus strand signal of all reads) 123.5 MB
ENCSR529FKI ENCSR · via encode_api

eCLIP experiment on K562 against CSDA

Homo sapiens

36 data files
FileTypeSize
ENCFF007ERP.bigBed bigBed (peaks) 7.6 MB
ENCFF036YTF.bed bed (peaks) 2.5 MB
ENCFF047HLT.fastq fastq (reads) 670.7 MB
ENCFF047ZXN.bigWig bigWig (minus strand signal of unique reads) 22.3 MB
ENCFF048UHG.bigWig bigWig (plus strand signal of unique reads) 23.1 MB
ENCFF048XVA.bigBed bigBed (peaks) 7.8 MB
ENCFF087QMG.bigWig bigWig (plus strand signal of unique reads) 24.1 MB
ENCFF163JFW.bigBed bigBed (peaks) 2.3 MB
ENCFF176ZDX.bam bam (alignments) 707.7 MB
ENCFF184OIG.bam bam (alignments) 660.6 MB
ENCFF210TQC.bed bed (peaks) 2.7 MB
ENCFF231IID.bed bed (peaks) 2.7 MB
ENCFF279AVU.bam bam (alignments) 664.2 MB
ENCFF375SSS.bigBed bigBed (peaks) 6.0 MB
ENCFF398VQU.bed bed (peaks) 1.0 MB
ENCFF472NTC.bigBed bigBed (peaks) 5.3 MB
ENCFF526YVR.bed bed (peaks) 2.7 MB
ENCFF562INS.bed bed (peaks) 1.0 MB
ENCFF567MGK.bed bed (peaks) 432.6 KB
ENCFF611POQ.bigWig bigWig (plus strand signal of unique reads) 23.6 MB
ENCFF622BNJ.bigBed bigBed (peaks) 5.2 MB
ENCFF631SCU.fastq fastq (reads) 620.2 MB
ENCFF644FFX.bed bed (peaks) 2.7 MB
ENCFF655OVT.fastq fastq (reads) 702.8 MB
ENCFF678RVK.bigWig bigWig (minus strand signal of unique reads) 23.3 MB
ENCFF691NBP.bigBed bigBed (peaks) 6.0 MB
ENCFF706VIH.bigBed bigBed (peaks) 2.4 MB
ENCFF715TOV.bigWig bigWig (minus strand signal of unique reads) 22.7 MB
ENCFF724COO.bigBed bigBed (peaks) 6.1 MB
ENCFF746XLE.bed bed (peaks) 422.0 KB
ENCFF749RQN.bigWig bigWig (minus strand signal of unique reads) 22.5 MB
ENCFF829JJE.bigWig bigWig (plus strand signal of unique reads) 23.0 MB
ENCFF841ECJ.fastq fastq (reads) 763.1 MB
ENCFF914IQD.bigBed bigBed (peaks) 6.1 MB
ENCFF916BBS.bam bam (alignments) 684.1 MB
ENCFF923XZP.bed bed (peaks) 2.4 MB
ENCSR511SYK ENCSR · via encode_api

RNA-seq on HepG2 cells treated with an shRNA knockdown against ACO1. (ACO1_BGHLV31)

Homo sapiens

92 data files
FileTypeSize
ENCFF020EOH.tsv tsv (transcript quantifications) 29.8 MB
ENCFF027WKW.bigWig bigWig (plus strand signal of unique reads) 81.0 MB
ENCFF044CVW.bigWig bigWig (plus strand signal of all reads) 96.3 MB
ENCFF057ZBR.bigWig bigWig (plus strand signal of all reads) 85.3 MB
ENCFF074UAG.tsv tsv (differential expression quantifications) 4.4 MB
ENCFF079DIX.bigWig bigWig (plus strand signal of all reads) 86.6 MB
ENCFF082FJC.bigWig bigWig (minus strand signal of all reads) 85.1 MB
ENCFF100RMD.tsv tsv (transcript quantifications) 24.9 MB
ENCFF101MWV.bam bam (transcriptome alignments) 5.4 GB
ENCFF134HEO.tsv tsv (transcript quantifications) 25.3 MB
ENCFF154KME.bigWig bigWig (minus strand signal of all reads) 86.2 MB
ENCFF161WFT.bigWig bigWig (plus strand signal of unique reads) 81.7 MB
ENCFF176EUP.bam bam (alignments) 4.1 GB
ENCFF183BKD.bam bam (transcriptome alignments) 5.4 GB
ENCFF185EXZ.bigWig bigWig (plus strand signal of unique reads) 86.8 MB
ENCFF208NWG.bigWig bigWig (plus strand signal of unique reads) 86.9 MB
ENCFF217VEW.bigWig bigWig (plus strand signal of all reads) 88.3 MB
ENCFF231LBZ.bigWig bigWig (plus strand signal of unique reads) 79.9 MB
ENCFF231OBB.bigWig bigWig (minus strand signal of all reads) 93.8 MB
ENCFF241FXO.bigWig bigWig (plus strand signal of all reads) 96.3 MB
ENCFF253KVK.tsv tsv (gene quantifications) 9.1 MB
ENCFF268LTC.tsv tsv (gene quantifications) 9.1 MB
ENCFF272YSH.bam bam (transcriptome alignments) 6.2 GB
ENCFF280LBX.tsv tsv (gene quantifications) 10.4 MB
ENCFF283NME.tsv tsv (transcript quantifications) 27.4 MB
ENCFF294APB.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF296KBH.tsv tsv (gene quantifications) 9.5 MB
ENCFF296NRA.bigWig bigWig (minus strand signal of unique reads) 83.9 MB
ENCFF311ERL.bam bam (alignments) 3.2 GB
ENCFF381CVD.bigWig bigWig (plus strand signal of all reads) 85.4 MB
ENCFF398EHP.tsv tsv (gene quantifications) 9.5 MB
ENCFF400USY.bigWig bigWig (plus strand signal of unique reads) 86.3 MB
ENCFF404VZE.fastq fastq (reads) 2.3 GB
ENCFF408NPP.bigWig bigWig (minus strand signal of unique reads) 78.8 MB
ENCFF411ZLI.bigWig bigWig (minus strand signal of unique reads) 84.5 MB
ENCFF419NEV.bigWig bigWig (minus strand signal of unique reads) 84.4 MB
ENCFF430OCP.bigWig bigWig (minus strand signal of unique reads) 78.8 MB
ENCFF434BHK.bam bam (transcriptome alignments) 5.4 GB
ENCFF452JLB.bigWig bigWig (minus strand signal of unique reads) 83.3 MB
ENCFF454RTV.bigWig bigWig (plus strand signal of all reads) 95.7 MB
ENCFF455APD.bigWig bigWig (minus strand signal of all reads) 83.8 MB
ENCFF458WAN.tsv tsv (transcript quantifications) 24.9 MB
ENCFF459FTY.tsv tsv (differential expression quantifications) 3.0 MB
ENCFF472PNF.bam bam (transcriptome alignments) 5.4 GB
ENCFF493XEK.bam bam (alignments) 4.0 GB
ENCFF495RBD.bam bam (alignments) 4.1 GB
ENCFF511SHN.bam bam (alignments) 4.2 GB
ENCFF517WMS.bigWig bigWig (minus strand signal of all reads) 83.8 MB
ENCFF519EJD.bam bam (alignments) 3.3 GB
ENCFF525SUW.bigWig bigWig (plus strand signal of all reads) 87.9 MB
ENCFF539MMV.bigWig bigWig (plus strand signal of all reads) 95.2 MB
ENCFF542QVS.bigWig bigWig (minus strand signal of unique reads) 76.7 MB
ENCFF550VDJ.bigWig bigWig (plus strand signal of all reads) 96.3 MB
ENCFF560CAI.bigWig bigWig (plus strand signal of unique reads) 81.4 MB
ENCFF567PDL.bigWig bigWig (plus strand signal of unique reads) 85.6 MB
ENCFF575ROT.bam bam (transcriptome alignments) 6.2 GB
ENCFF594AAV.bigWig bigWig (minus strand signal of all reads) 83.3 MB
ENCFF631JYZ.tar tar (differential splicing quantifications) 17.0 MB
ENCFF631XZV.bigWig bigWig (minus strand signal of unique reads) 79.3 MB
ENCFF633SGL.fastq fastq (reads) 2.3 GB
ENCFF639GVB.bam bam (alignments) 3.1 GB
ENCFF656LXB.bigWig bigWig (plus strand signal of all reads) 96.3 MB
ENCFF674SMT.bigWig bigWig (minus strand signal of all reads) 94.6 MB
ENCFF681MQG.bam bam (alignments) 3.3 GB
ENCFF693TKL.bigWig bigWig (minus strand signal of unique reads) 83.9 MB
ENCFF705CZQ.bam bam (alignments) 4.2 GB
ENCFF765CTI.bigWig bigWig (minus strand signal of unique reads) 77.7 MB
ENCFF788TUC.bigWig bigWig (plus strand signal of unique reads) 80.9 MB
ENCFF795BJX.bigWig bigWig (plus strand signal of unique reads) 86.2 MB
ENCFF800GRH.bigWig bigWig (minus strand signal of all reads) 94.7 MB
ENCFF801OXN.bigWig bigWig (plus strand signal of unique reads) 78.8 MB
ENCFF817TNN.bam bam (alignments) 3.4 GB
ENCFF844QIW.tar tar (differential splicing quantifications) 3.4 MB
ENCFF846HDA.fastq fastq (reads) 2.3 GB
ENCFF866CST.fastq fastq (reads) 2.3 GB
ENCFF872FGC.tsv tsv (differential expression quantifications) 2.0 MB
ENCFF875ZGT.bigWig bigWig (minus strand signal of all reads) 94.6 MB
ENCFF882IPK.tsv tsv (gene quantifications) 10.4 MB
ENCFF883LPS.tar tar (differential splicing quantifications) 4.2 MB
ENCFF894MDK.tsv tsv (transcript quantifications) 27.4 MB
ENCFF896AYS.bigWig bigWig (minus strand signal of all reads) 86.5 MB
ENCFF911EQV.bigWig bigWig (plus strand signal of all reads) 84.9 MB
ENCFF922ZRI.tsv tsv (differential expression quantifications) 5.5 MB
ENCFF923KSZ.bigWig bigWig (minus strand signal of unique reads) 83.9 MB
ENCFF937QOK.bigWig bigWig (minus strand signal of unique reads) 79.4 MB
ENCFF945ZSE.bigWig bigWig (plus strand signal of unique reads) 86.1 MB
ENCFF967JEW.bigWig bigWig (minus strand signal of all reads) 94.2 MB
ENCFF974YCK.tsv tsv (transcript quantifications) 29.8 MB
ENCFF974YWT.bam bam (alignments) 3.8 GB
ENCFF990PPT.tsv tsv (transcript quantifications) 25.3 MB
ENCFF994DGX.bigWig bigWig (minus strand signal of all reads) 94.7 MB
ENCFF995CGT.bam bam (alignments) 3.1 GB
ENCSR599PXD ENCSR · via encode_api

RNA-seq on HepG2 cells treated with an shRNA knockdown against RBM15. (RBM15_BGHLV31)

Homo sapiens

92 data files
FileTypeSize
ENCFF026HSZ.bigWig bigWig (plus strand signal of all reads) 133.8 MB
ENCFF026RKZ.bigWig bigWig (plus strand signal of unique reads) 106.5 MB
ENCFF036BRV.bigWig bigWig (minus strand signal of unique reads) 81.9 MB
ENCFF057WEZ.bam bam (alignments) 12.5 GB
ENCFF066HKY.bam bam (transcriptome alignments) 7.9 GB
ENCFF067STO.bigWig bigWig (plus strand signal of unique reads) 119.0 MB
ENCFF067ULH.bigWig bigWig (plus strand signal of unique reads) 106.5 MB
ENCFF069KOV.bam bam (alignments) 10.5 GB
ENCFF069VAW.bigWig bigWig (minus strand signal of unique reads) 72.2 MB
ENCFF070OJW.bam bam (alignments) 13.0 GB
ENCFF087OLE.bigWig bigWig (plus strand signal of unique reads) 83.6 MB
ENCFF091IWT.bigWig bigWig (plus strand signal of unique reads) 119.4 MB
ENCFF128FIR.bam bam (alignments) 5.8 GB
ENCFF132LKO.fastq fastq (reads) 7.1 GB
ENCFF143YWO.bigWig bigWig (minus strand signal of unique reads) 70.9 MB
ENCFF159HVQ.tsv tsv (gene quantifications) 9.1 MB
ENCFF190ZBF.bigWig bigWig (plus strand signal of unique reads) 118.8 MB
ENCFF200VUU.tsv tsv (gene quantifications) 9.1 MB
ENCFF236BTO.tsv tsv (gene quantifications) 9.5 MB
ENCFF239XXF.bam bam (alignments) 7.1 GB
ENCFF245CDW.bam bam (transcriptome alignments) 7.9 GB
ENCFF247HFQ.bigWig bigWig (plus strand signal of all reads) 92.5 MB
ENCFF259RDT.bigWig bigWig (minus strand signal of all reads) 91.3 MB
ENCFF276WQL.bam bam (alignments) 6.9 GB
ENCFF282DAW.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF284WIJ.bigWig bigWig (plus strand signal of all reads) 112.4 MB
ENCFF301XNP.bigWig bigWig (minus strand signal of unique reads) 104.1 MB
ENCFF309HAC.bigWig bigWig (plus strand signal of unique reads) 83.5 MB
ENCFF313YGK.fastq fastq (reads) 6.8 GB
ENCFF319FKW.bam bam (alignments) 10.7 GB
ENCFF324AFT.bam bam (alignments) 7.1 GB
ENCFF326WLB.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF329GMF.tsv tsv (transcript quantifications) 29.9 MB
ENCFF356HWM.bigWig bigWig (plus strand signal of unique reads) 104.0 MB
ENCFF361PCI.bam bam (transcriptome alignments) 16.3 GB
ENCFF386GJP.bigWig bigWig (minus strand signal of all reads) 130.0 MB
ENCFF387XSV.bigWig bigWig (minus strand signal of unique reads) 104.3 MB
ENCFF403BXU.tsv tsv (transcript quantifications) 25.0 MB
ENCFF408TCU.tsv tsv (transcript quantifications) 25.4 MB
ENCFF418OZB.bam bam (alignments) 10.5 GB
ENCFF427OSI.bigWig bigWig (minus strand signal of all reads) 110.5 MB
ENCFF428ABK.bigWig bigWig (minus strand signal of all reads) 132.2 MB
ENCFF435RZG.bigWig bigWig (plus strand signal of unique reads) 72.6 MB
ENCFF444PLD.bigWig bigWig (minus strand signal of unique reads) 81.8 MB
ENCFF454PPX.bigWig bigWig (minus strand signal of all reads) 110.5 MB
ENCFF454WVY.bigWig bigWig (minus strand signal of all reads) 113.3 MB
ENCFF459LWR.bigWig bigWig (minus strand signal of unique reads) 116.4 MB
ENCFF471FVW.bigWig bigWig (plus strand signal of all reads) 92.5 MB
ENCFF476TZP.bigWig bigWig (minus strand signal of unique reads) 116.6 MB
ENCFF489BOR.tsv tsv (differential expression quantifications) 4.4 MB
ENCFF490FOZ.bigWig bigWig (minus strand signal of unique reads) 101.6 MB
ENCFF493BVU.bigWig bigWig (minus strand signal of all reads) 132.2 MB
ENCFF504UAQ.bigWig bigWig (plus strand signal of all reads) 133.8 MB
ENCFF522XFF.tsv tsv (differential expression quantifications) 2.0 MB
ENCFF531DHB.bam bam (transcriptome alignments) 14.5 GB
ENCFF534MCV.bigWig bigWig (plus strand signal of unique reads) 83.4 MB
ENCFF588KVM.bigWig bigWig (plus strand signal of all reads) 112.1 MB
ENCFF590JFP.fastq fastq (reads) 3.8 GB
ENCFF590NCO.tsv tsv (transcript quantifications) 27.4 MB
ENCFF598XVT.bam bam (alignments) 5.8 GB
ENCFF599HOR.bam bam (alignments) 5.9 GB
ENCFF603GJZ.bigWig bigWig (minus strand signal of all reads) 90.7 MB
ENCFF617EIV.bigWig bigWig (plus strand signal of unique reads) 74.2 MB
ENCFF649XEP.tar tar (differential splicing quantifications) 17.5 MB
ENCFF653RGP.tsv tsv (transcript quantifications) 25.4 MB
ENCFF657NCL.bigWig bigWig (minus strand signal of unique reads) 72.7 MB
ENCFF685JUE.tsv tsv (transcript quantifications) 27.5 MB
ENCFF690NKJ.bam bam (transcriptome alignments) 8.9 GB
ENCFF712IWO.tsv tsv (transcript quantifications) 29.9 MB
ENCFF712MFV.bigWig bigWig (plus strand signal of unique reads) 73.9 MB
ENCFF731UZZ.fastq fastq (reads) 3.8 GB
ENCFF734VGA.bigWig bigWig (minus strand signal of all reads) 91.4 MB
ENCFF737QOH.tsv tsv (gene quantifications) 10.4 MB
ENCFF739IAJ.bigWig bigWig (plus strand signal of all reads) 115.2 MB
ENCFF752PDC.bigWig bigWig (minus strand signal of all reads) 76.4 MB
ENCFF773CSH.tsv tsv (transcript quantifications) 25.0 MB
ENCFF773VSW.tsv tsv (gene quantifications) 10.4 MB
ENCFF782YAV.bam bam (alignments) 13.0 GB
ENCFF785MVV.bigWig bigWig (minus strand signal of unique reads) 117.0 MB
ENCFF786OPW.tar tar (differential splicing quantifications) 4.5 MB
ENCFF789EJM.tar tar (differential splicing quantifications) 3.7 MB
ENCFF834PFY.tsv tsv (differential expression quantifications) 1.8 MB
ENCFF848HBY.tsv tsv (gene quantifications) 9.5 MB
ENCFF864IXG.bigWig bigWig (minus strand signal of all reads) 77.5 MB
ENCFF865BXL.bigWig bigWig (minus strand signal of unique reads) 81.9 MB
ENCFF942LNL.bigWig bigWig (plus strand signal of all reads) 91.7 MB
ENCFF945KDF.bigWig bigWig (plus strand signal of all reads) 78.7 MB
ENCFF966OAY.bigWig bigWig (plus strand signal of all reads) 79.3 MB
ENCFF967JMB.bam bam (transcriptome alignments) 14.5 GB
ENCFF972QGE.bigWig bigWig (minus strand signal of all reads) 78.0 MB
ENCFF982NUS.bigWig bigWig (plus strand signal of all reads) 77.8 MB
ENCFF999KVM.bigWig bigWig (plus strand signal of all reads) 131.4 MB
ENCSR795VAK ENCSR · via encode_api

RNA-seq on K562 cells treated with an shRNA knockdown against CPEB4. (CPEB4_BGKLV25)

Homo sapiens

92 data files
FileTypeSize
ENCFF020TXB.tsv tsv (transcript quantifications) 29.9 MB
ENCFF023XGG.bigWig bigWig (minus strand signal of unique reads) 87.5 MB
ENCFF031GRZ.fastq fastq (reads) 3.2 GB
ENCFF040PUW.tsv tsv (transcript quantifications) 25.3 MB
ENCFF071AIC.bam bam (transcriptome alignments) 10.2 GB
ENCFF077SKU.bigWig bigWig (minus strand signal of unique reads) 78.1 MB
ENCFF078UWZ.bigWig bigWig (minus strand signal of all reads) 108.6 MB
ENCFF083LFA.bigWig bigWig (minus strand signal of all reads) 131.5 MB
ENCFF088CBF.tsv tsv (gene quantifications) 9.1 MB
ENCFF090HBU.tsv tsv (gene quantifications) 9.1 MB
ENCFF104ZWP.bigWig bigWig (minus strand signal of unique reads) 114.6 MB
ENCFF113XNT.bigWig bigWig (plus strand signal of unique reads) 117.3 MB
ENCFF114HRL.bam bam (alignments) 8.0 GB
ENCFF114ZEL.fastq fastq (reads) 5.1 GB
ENCFF122XHX.bam bam (transcriptome alignments) 6.4 GB
ENCFF123VQY.fastq fastq (reads) 3.2 GB
ENCFF136TGW.bam bam (alignments) 6.3 GB
ENCFF139YDM.bam bam (transcriptome alignments) 10.2 GB
ENCFF140AGC.tsv tsv (differential expression quantifications) 2.0 MB
ENCFF167DQJ.bigWig bigWig (minus strand signal of all reads) 84.9 MB
ENCFF167HPP.bam bam (alignments) 6.3 GB
ENCFF172KOS.tsv tsv (transcript quantifications) 27.5 MB
ENCFF173FPT.bigWig bigWig (minus strand signal of all reads) 82.7 MB
ENCFF221ZPT.bam bam (transcriptome alignments) 7.2 GB
ENCFF227QHF.bigWig bigWig (plus strand signal of unique reads) 118.1 MB
ENCFF259CSS.bigWig bigWig (plus strand signal of all reads) 131.6 MB
ENCFF287PHO.bigWig bigWig (minus strand signal of unique reads) 101.1 MB
ENCFF294GUO.tsv tsv (gene quantifications) 10.4 MB
ENCFF296PPF.bigWig bigWig (plus strand signal of all reads) 86.4 MB
ENCFF359NDV.bam bam (transcriptome alignments) 11.5 GB
ENCFF360MMY.bam bam (alignments) 6.1 GB
ENCFF372QQX.bigWig bigWig (minus strand signal of unique reads) 102.4 MB
ENCFF386LPC.bigWig bigWig (plus strand signal of all reads) 99.8 MB
ENCFF412PSD.bigWig bigWig (minus strand signal of unique reads) 115.7 MB
ENCFF417KCL.bigWig bigWig (minus strand signal of unique reads) 98.4 MB
ENCFF417NIQ.bigWig bigWig (plus strand signal of all reads) 101.5 MB
ENCFF430ZQN.bigWig bigWig (minus strand signal of all reads) 130.1 MB
ENCFF445EAJ.tsv tsv (transcript quantifications) 27.5 MB
ENCFF445SZK.bigWig bigWig (plus strand signal of all reads) 110.6 MB
ENCFF449YKE.bigWig bigWig (minus strand signal of unique reads) 75.3 MB
ENCFF478JJQ.bigWig bigWig (plus strand signal of unique reads) 118.0 MB
ENCFF483TOP.bigWig bigWig (plus strand signal of unique reads) 90.0 MB
ENCFF497PEV.bam bam (alignments) 10.2 GB
ENCFF508IXG.fastq fastq (reads) 5.2 GB
ENCFF515IPL.tsv tsv (gene quantifications) 9.5 MB
ENCFF525MDG.bigWig bigWig (minus strand signal of unique reads) 88.2 MB
ENCFF547YGO.bigWig bigWig (plus strand signal of unique reads) 80.1 MB
ENCFF568ARL.bigWig bigWig (minus strand signal of all reads) 109.2 MB
ENCFF572HQB.bigWig bigWig (minus strand signal of all reads) 100.3 MB
ENCFF584UXH.bigWig bigWig (plus strand signal of all reads) 133.0 MB
ENCFF590SJR.bigWig bigWig (plus strand signal of unique reads) 105.0 MB
ENCFF605FBH.bigWig bigWig (plus strand signal of all reads) 84.6 MB
ENCFF609SGU.bigWig bigWig (minus strand signal of unique reads) 115.6 MB
ENCFF611SNF.bigWig bigWig (plus strand signal of all reads) 84.2 MB
ENCFF620ADZ.bigWig bigWig (plus strand signal of unique reads) 103.1 MB
ENCFF635CSP.tar tar (differential splicing quantifications) 4.3 MB
ENCFF656GMY.bigWig bigWig (plus strand signal of all reads) 101.4 MB
ENCFF661PIZ.bigWig bigWig (minus strand signal of all reads) 100.3 MB
ENCFF663OIM.bam bam (alignments) 8.2 GB
ENCFF669XQX.bigWig bigWig (minus strand signal of all reads) 131.6 MB
ENCFF688ORJ.bam bam (alignments) 10.2 GB
ENCFF690FJL.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF691NKW.tsv tsv (differential expression quantifications) 1.8 MB
ENCFF707KMM.tsv tsv (differential expression quantifications) 4.4 MB
ENCFF733HTW.bigWig bigWig (minus strand signal of all reads) 83.5 MB
ENCFF741MNW.bam bam (alignments) 8.0 GB
ENCFF746ZJR.tsv tsv (gene quantifications) 10.4 MB
ENCFF762IYC.tar tar (differential splicing quantifications) 17.4 MB
ENCFF768AOM.bam bam (alignments) 5.2 GB
ENCFF772NYE.bigWig bigWig (minus strand signal of all reads) 111.7 MB
ENCFF774KTO.tsv tsv (transcript quantifications) 29.8 MB
ENCFF793PMX.bam bam (alignments) 5.1 GB
ENCFF803OLZ.bigWig bigWig (plus strand signal of all reads) 110.6 MB
ENCFF807BMD.tar tar (differential splicing quantifications) 5.2 MB
ENCFF824PXU.tsv tsv (transcript quantifications) 25.4 MB
ENCFF850GPZ.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF850SQP.bigWig bigWig (plus strand signal of unique reads) 90.1 MB
ENCFF850THQ.bam bam (transcriptome alignments) 6.4 GB
ENCFF855HNP.bam bam (alignments) 5.1 GB
ENCFF875BGN.bigWig bigWig (plus strand signal of unique reads) 101.0 MB
ENCFF878LCR.bigWig bigWig (plus strand signal of all reads) 133.0 MB
ENCFF880VCG.tsv tsv (gene quantifications) 9.5 MB
ENCFF893HDD.tsv tsv (transcript quantifications) 24.9 MB
ENCFF898RKO.bigWig bigWig (plus strand signal of unique reads) 78.0 MB
ENCFF908PIU.bigWig bigWig (plus strand signal of unique reads) 77.4 MB
ENCFF909PNQ.bigWig bigWig (minus strand signal of unique reads) 87.9 MB
ENCFF920WQO.bigWig bigWig (minus strand signal of all reads) 98.8 MB
ENCFF928ASE.bigWig bigWig (plus strand signal of all reads) 113.6 MB
ENCFF928RGA.tsv tsv (transcript quantifications) 24.9 MB
ENCFF940VZA.bigWig bigWig (minus strand signal of unique reads) 76.3 MB
ENCFF957ARX.bigWig bigWig (plus strand signal of unique reads) 89.4 MB
ENCFF960MRQ.bam bam (alignments) 9.7 GB
ENCSR744POX ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) pulldown experiment against SRSF10

11 data files
FileTypeSize
ENCFF057FSE.tsv tsv (enrichment) 14.8 KB
ENCFF272IIN.fastq fastq (reads) 234.4 MB
ENCFF386EWB.fastq fastq (reads) 271.7 MB
ENCFF457XQS.fastq fastq (reads) 266.4 MB
ENCFF590LJM.tsv tsv (library fraction) 75.3 KB
ENCFF593KNI.fastq fastq (reads) 291.6 MB
ENCFF645LFQ.tsv tsv (library fraction) 313.1 KB
ENCFF820MRK.tsv tsv (library fraction) 17.8 KB
ENCFF855MSY.tsv tsv (enrichment) 60.0 KB
ENCFF896LEJ.tsv tsv (enrichment) 244.0 KB
ENCFF908JKG.fastq fastq (reads) 262.7 MB
ENCSR885YOI ENCSR · via encode_api

shRNA knockdown against CSTF2 in K562 cells followed by RNA-seq. (CSTF2_BGKLV19)

Homo sapiens

92 data files
FileTypeSize
ENCFF020ZUR.bigWig bigWig (plus strand signal of all reads) 58.8 MB
ENCFF027JNY.bam bam (transcriptome alignments) 2.7 GB
ENCFF049DFS.bam bam (alignments) 3.5 GB
ENCFF058IPN.bigWig bigWig (plus strand signal of all reads) 63.9 MB
ENCFF066EWX.bam bam (alignments) 1.8 GB
ENCFF075RDO.bigWig bigWig (plus strand signal of all reads) 50.2 MB
ENCFF079NQT.bigWig bigWig (plus strand signal of unique reads) 46.5 MB
ENCFF083RWW.tsv tsv (transcript quantifications) 27.3 MB
ENCFF095AQK.bam bam (alignments) 3.5 GB
ENCFF102LRN.bigWig bigWig (minus strand signal of unique reads) 56.2 MB
ENCFF114APH.bigWig bigWig (minus strand signal of unique reads) 45.2 MB
ENCFF114DYB.bigWig bigWig (minus strand signal of unique reads) 51.3 MB
ENCFF116UEK.bam bam (alignments) 2.2 GB
ENCFF161WNL.bigWig bigWig (minus strand signal of all reads) 58.0 MB
ENCFF167LFY.bigWig bigWig (plus strand signal of all reads) 62.3 MB
ENCFF181JHA.bigWig bigWig (plus strand signal of all reads) 71.9 MB
ENCFF185UVM.tsv tsv (gene quantifications) 10.4 MB
ENCFF185YJA.bam bam (transcriptome alignments) 3.5 GB
ENCFF189DFZ.bigWig bigWig (minus strand signal of unique reads) 62.2 MB
ENCFF204UCE.tsv tsv (transcript quantifications) 27.2 MB
ENCFF206BRR.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF208EIS.bigWig bigWig (plus strand signal of unique reads) 60.8 MB
ENCFF227TKE.tsv tsv (gene quantifications) 9.4 MB
ENCFF238WHQ.fastq fastq (reads) 1.6 GB
ENCFF240PKO.bigWig bigWig (minus strand signal of all reads) 57.9 MB
ENCFF253PEJ.tsv tsv (gene quantifications) 9.1 MB
ENCFF254AMO.tsv tsv (gene quantifications) 9.4 MB
ENCFF261IIN.bam bam (alignments) 2.9 GB
ENCFF264QWI.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF289KUP.bigWig bigWig (plus strand signal of all reads) 70.5 MB
ENCFF301VCT.bigWig bigWig (minus strand signal of unique reads) 49.0 MB
ENCFF317FFU.bam bam (alignments) 2.1 GB
ENCFF329TEL.bigWig bigWig (minus strand signal of all reads) 70.8 MB
ENCFF331QRJ.tsv tsv (gene quantifications) 10.4 MB
ENCFF353WVW.bam bam (alignments) 2.6 GB
ENCFF382UVT.tsv tsv (transcript quantifications) 25.2 MB
ENCFF391FZS.bigWig bigWig (plus strand signal of all reads) 53.2 MB
ENCFF417THV.bigWig bigWig (plus strand signal of unique reads) 63.6 MB
ENCFF441FOA.bigWig bigWig (plus strand signal of all reads) 58.7 MB
ENCFF468LDX.tsv tsv (gene quantifications) 9.1 MB
ENCFF477ZWR.fastq fastq (reads) 1.1 GB
ENCFF478IWQ.tsv tsv (differential expression quantifications) 4.2 MB
ENCFF488UYY.bam bam (alignments) 3.0 GB
ENCFF489EVQ.bigWig bigWig (minus strand signal of unique reads) 59.0 MB
ENCFF528WIR.tsv tsv (transcript quantifications) 24.8 MB
ENCFF529WZL.tsv tsv (transcript quantifications) 24.8 MB
ENCFF531IRL.bigWig bigWig (plus strand signal of unique reads) 63.6 MB
ENCFF532MDS.bigWig bigWig (minus strand signal of all reads) 53.3 MB
ENCFF539UDA.bam bam (transcriptome alignments) 3.5 GB
ENCFF545JBO.fastq fastq (reads) 1.2 GB
ENCFF549YKP.tsv tsv (transcript quantifications) 25.2 MB
ENCFF553OME.bigWig bigWig (minus strand signal of unique reads) 51.4 MB
ENCFF559NGD.bigWig bigWig (minus strand signal of unique reads) 62.8 MB
ENCFF562OFU.tar tar (differential splicing quantifications) 3.6 MB
ENCFF575NWI.bam bam (transcriptome alignments) 3.9 GB
ENCFF598TVU.tar tar (differential splicing quantifications) 13.9 MB
ENCFF615LPE.bigWig bigWig (plus strand signal of unique reads) 52.5 MB
ENCFF617SPC.bigWig bigWig (plus strand signal of unique reads) 52.2 MB
ENCFF661KWF.bigWig bigWig (minus strand signal of unique reads) 62.1 MB
ENCFF665YRR.fastq fastq (reads) 1.7 GB
ENCFF672YIJ.bam bam (alignments) 2.2 GB
ENCFF686PYW.bigWig bigWig (plus strand signal of all reads) 65.2 MB
ENCFF691SGD.bam bam (transcriptome alignments) 2.4 GB
ENCFF692OIX.bigWig bigWig (minus strand signal of all reads) 58.1 MB
ENCFF695AFF.bam bam (transcriptome alignments) 2.4 GB
ENCFF706PKF.bigWig bigWig (minus strand signal of unique reads) 59.3 MB
ENCFF724ITG.tsv tsv (differential expression quantifications) 5.5 MB
ENCFF726NCI.bigWig bigWig (plus strand signal of unique reads) 64.1 MB
ENCFF736ELC.bigWig bigWig (minus strand signal of all reads) 49.4 MB
ENCFF747HRV.bigWig bigWig (minus strand signal of all reads) 70.8 MB
ENCFF776CJW.tar tar (differential splicing quantifications) 3.2 MB
ENCFF789INJ.bam bam (alignments) 2.6 GB
ENCFF792ULN.bigWig bigWig (plus strand signal of unique reads) 49.4 MB
ENCFF802KPA.bigWig bigWig (plus strand signal of unique reads) 57.8 MB
ENCFF810VFA.bigWig bigWig (minus strand signal of unique reads) 48.5 MB
ENCFF810XPD.bigWig bigWig (minus strand signal of all reads) 64.0 MB
ENCFF816UDX.bigWig bigWig (minus strand signal of all reads) 52.6 MB
ENCFF831FCM.bam bam (alignments) 1.8 GB
ENCFF836CTL.bigWig bigWig (plus strand signal of all reads) 71.8 MB
ENCFF841EJH.bigWig bigWig (plus strand signal of all reads) 58.9 MB
ENCFF848KQI.bigWig bigWig (minus strand signal of all reads) 63.0 MB
ENCFF854ECX.bigWig bigWig (minus strand signal of unique reads) 51.0 MB
ENCFF870IZO.tsv tsv (transcript quantifications) 29.7 MB
ENCFF873SRD.bigWig bigWig (plus strand signal of unique reads) 52.5 MB
ENCFF882WQB.bigWig bigWig (minus strand signal of all reads) 61.1 MB
ENCFF883CLQ.bigWig bigWig (minus strand signal of all reads) 69.6 MB
ENCFF893WLY.tsv tsv (transcript quantifications) 29.7 MB
ENCFF900UNC.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF918JUD.bigWig bigWig (plus strand signal of all reads) 54.2 MB
ENCFF921CZO.bigWig bigWig (plus strand signal of unique reads) 50.2 MB
ENCFF932CGR.bam bam (alignments) 1.8 GB
ENCFF976EPT.bigWig bigWig (plus strand signal of unique reads) 60.2 MB
ENCSR117WLY ENCSR · via encode_api

shRNA knockdown against EFTUD2 in K562 cells followed by RNA-seq. (EFTUD2_BGKLV19)

Homo sapiens

92 data files
FileTypeSize
ENCFF007KAA.bigWig bigWig (plus strand signal of unique reads) 90.9 MB
ENCFF019VUT.bigWig bigWig (minus strand signal of all reads) 88.2 MB
ENCFF043KOI.bigWig bigWig (minus strand signal of all reads) 92.3 MB
ENCFF066ZRM.bigWig bigWig (minus strand signal of unique reads) 94.9 MB
ENCFF070DBN.tsv tsv (transcript quantifications) 24.8 MB
ENCFF075SUP.bigWig bigWig (minus strand signal of unique reads) 69.9 MB
ENCFF079PHW.bigWig bigWig (plus strand signal of unique reads) 80.7 MB
ENCFF092IMF.bigWig bigWig (minus strand signal of unique reads) 94.1 MB
ENCFF098JUZ.bigWig bigWig (plus strand signal of all reads) 109.2 MB
ENCFF104FJO.tsv tsv (differential expression quantifications) 4.3 MB
ENCFF121WQZ.fastq fastq (reads) 2.5 GB
ENCFF126VDL.bigWig bigWig (minus strand signal of unique reads) 84.8 MB
ENCFF127OUY.bigWig bigWig (minus strand signal of unique reads) 78.4 MB
ENCFF142UQL.tsv tsv (transcript quantifications) 25.3 MB
ENCFF154YIJ.tsv tsv (gene quantifications) 9.4 MB
ENCFF160GQR.tsv tsv (gene quantifications) 9.1 MB
ENCFF161IPL.fastq fastq (reads) 1.9 GB
ENCFF170PIP.tsv tsv (transcript quantifications) 29.8 MB
ENCFF174UVS.tsv tsv (gene quantifications) 9.1 MB
ENCFF187UTH.bigWig bigWig (plus strand signal of unique reads) 97.4 MB
ENCFF219ZRK.fastq fastq (reads) 2.7 GB
ENCFF241RNO.tar tar (differential splicing quantifications) 14.8 MB
ENCFF268XHW.bigWig bigWig (minus strand signal of all reads) 76.3 MB
ENCFF284XQA.bam bam (transcriptome alignments) 6.1 GB
ENCFF295KHR.bigWig bigWig (plus strand signal of unique reads) 87.5 MB
ENCFF306QLW.bam bam (alignments) 4.3 GB
ENCFF320UXB.bigWig bigWig (minus strand signal of all reads) 88.3 MB
ENCFF328NKJ.bigWig bigWig (plus strand signal of unique reads) 75.8 MB
ENCFF343YLZ.bigWig bigWig (plus strand signal of all reads) 109.2 MB
ENCFF361ZJP.bigWig bigWig (plus strand signal of all reads) 89.5 MB
ENCFF363CFY.bigWig bigWig (minus strand signal of unique reads) 77.8 MB
ENCFF382PEB.bigWig bigWig (plus strand signal of all reads) 88.7 MB
ENCFF385UTU.bigWig bigWig (plus strand signal of all reads) 80.1 MB
ENCFF426QSF.tar tar (differential splicing quantifications) 4.2 MB
ENCFF430GPP.tsv tsv (gene quantifications) 10.4 MB
ENCFF433IJI.tsv tsv (transcript quantifications) 27.5 MB
ENCFF446CYK.tsv tsv (gene quantifications) 10.4 MB
ENCFF447VYU.tsv tsv (differential expression quantifications) 2.7 MB
ENCFF461OSB.tsv tsv (transcript quantifications) 29.7 MB
ENCFF466BXX.tsv tsv (gene quantifications) 9.4 MB
ENCFF469LEZ.bigWig bigWig (plus strand signal of unique reads) 80.6 MB
ENCFF485UWY.bigWig bigWig (minus strand signal of all reads) 87.4 MB
ENCFF494FAK.bam bam (transcriptome alignments) 4.0 GB
ENCFF495EOU.bigWig bigWig (plus strand signal of unique reads) 72.0 MB
ENCFF496NDI.bam bam (transcriptome alignments) 4.6 GB
ENCFF496QEL.bigWig bigWig (minus strand signal of all reads) 78.9 MB
ENCFF509DHK.bam bam (alignments) 4.1 GB
ENCFF526AFU.bigWig bigWig (plus strand signal of unique reads) 92.4 MB
ENCFF573CCJ.bigWig bigWig (plus strand signal of all reads) 107.8 MB
ENCFF582DBT.tar tar (differential splicing quantifications) 5.0 MB
ENCFF589HRJ.bigWig bigWig (plus strand signal of all reads) 89.6 MB
ENCFF590TQU.tsv tsv (transcript quantifications) 24.9 MB
ENCFF591DEZ.bigWig bigWig (plus strand signal of unique reads) 79.8 MB
ENCFF592PPV.bigWig bigWig (plus strand signal of unique reads) 96.2 MB
ENCFF602UZH.fastq fastq (reads) 2.0 GB
ENCFF622LVX.bam bam (alignments) 3.8 GB
ENCFF629DXH.bam bam (alignments) 3.8 GB
ENCFF635ZPV.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF646DYL.bam bam (alignments) 5.1 GB
ENCFF656OLB.bigWig bigWig (minus strand signal of unique reads) 88.7 MB
ENCFF661BGI.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF672EZM.bigWig bigWig (minus strand signal of unique reads) 93.5 MB
ENCFF673VWZ.bigWig bigWig (minus strand signal of all reads) 95.0 MB
ENCFF675SZA.tsv tsv (transcript quantifications) 27.4 MB
ENCFF692AOK.bigWig bigWig (minus strand signal of unique reads) 73.8 MB
ENCFF692WVL.bigWig bigWig (plus strand signal of all reads) 77.8 MB
ENCFF706OUH.bam bam (transcriptome alignments) 4.1 GB
ENCFF711PEN.bigWig bigWig (plus strand signal of all reads) 94.3 MB
ENCFF726KZQ.bam bam (alignments) 3.1 GB
ENCFF758WPH.bam bam (alignments) 4.9 GB
ENCFF772JFO.bigWig bigWig (plus strand signal of all reads) 96.5 MB
ENCFF786EZV.bam bam (transcriptome alignments) 5.5 GB
ENCFF802SHJ.bigWig bigWig (minus strand signal of all reads) 81.1 MB
ENCFF806IAG.bigWig bigWig (plus strand signal of unique reads) 75.8 MB
ENCFF808RTW.bam bam (transcriptome alignments) 5.4 GB
ENCFF811UAO.bam bam (alignments) 4.2 GB
ENCFF814NCC.bam bam (alignments) 3.1 GB
ENCFF819TCC.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF822OHH.bam bam (alignments) 3.1 GB
ENCFF823WCR.bigWig bigWig (minus strand signal of all reads) 107.5 MB
ENCFF828SMM.bigWig bigWig (plus strand signal of all reads) 99.6 MB
ENCFF859WZL.bigWig bigWig (minus strand signal of all reads) 106.0 MB
ENCFF863EFW.tsv tsv (transcript quantifications) 25.3 MB
ENCFF879ZXO.bigWig bigWig (plus strand signal of all reads) 82.7 MB
ENCFF885IIZ.bigWig bigWig (minus strand signal of all reads) 107.5 MB
ENCFF888SNM.bigWig bigWig (minus strand signal of unique reads) 78.6 MB
ENCFF921YRU.bigWig bigWig (plus strand signal of unique reads) 96.6 MB
ENCFF926ZVR.bigWig bigWig (minus strand signal of unique reads) 74.1 MB
ENCFF928GEG.bam bam (alignments) 5.1 GB
ENCFF932YXH.bigWig bigWig (minus strand signal of unique reads) 89.8 MB
ENCFF971QAZ.bigWig bigWig (minus strand signal of all reads) 97.6 MB
ENCFF993VQJ.bam bam (alignments) 3.6 GB
ENCSR914PGB ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) pulldown experiment against SRSF5

11 data files
FileTypeSize
ENCFF130TEX.fastq fastq (reads) 559.4 MB
ENCFF214SJB.tsv tsv (library fraction) 75.2 KB
ENCFF229OOD.fastq fastq (reads) 405.6 MB
ENCFF351IBT.tsv tsv (enrichment) 244.0 KB
ENCFF388IAE.fastq fastq (reads) 565.5 MB
ENCFF478NNJ.tsv tsv (library fraction) 313.1 KB
ENCFF762GOC.tsv tsv (enrichment) 60.0 KB
ENCFF804SHE.fastq fastq (reads) 537.7 MB
ENCFF842OMI.tsv tsv (enrichment) 14.8 KB
ENCFF901VZV.fastq fastq (reads) 364.2 MB
ENCFF977YCA.tsv tsv (library fraction) 17.9 KB
ENCSR760EGM ENCSR · via encode_api

RNA-seq on HepG2 cells treated with an shRNA knockdown against RBM39. (RBM39_BGHLV26)

Homo sapiens

92 data files
FileTypeSize
ENCFF009BRC.tsv tsv (transcript quantifications) 29.9 MB
ENCFF016BIW.tsv tsv (transcript quantifications) 25.4 MB
ENCFF025PID.bigWig bigWig (minus strand signal of unique reads) 66.0 MB
ENCFF051IVM.bigWig bigWig (minus strand signal of all reads) 64.3 MB
ENCFF061YSK.tsv tsv (differential expression quantifications) 1.8 MB
ENCFF062RRE.bigWig bigWig (minus strand signal of unique reads) 66.4 MB
ENCFF063GLS.bigWig bigWig (plus strand signal of unique reads) 67.4 MB
ENCFF072BJO.bigWig bigWig (plus strand signal of unique reads) 63.9 MB
ENCFF076RUS.bam bam (transcriptome alignments) 7.0 GB
ENCFF090IHU.bam bam (transcriptome alignments) 6.5 GB
ENCFF094PEL.bigWig bigWig (plus strand signal of all reads) 75.8 MB
ENCFF097CMF.tsv tsv (gene quantifications) 9.1 MB
ENCFF108IUL.bigWig bigWig (minus strand signal of all reads) 73.7 MB
ENCFF132BWH.bigWig bigWig (minus strand signal of all reads) 74.7 MB
ENCFF132XHV.bam bam (alignments) 4.5 GB
ENCFF147URC.bigWig bigWig (minus strand signal of unique reads) 62.2 MB
ENCFF161VUQ.bam bam (alignments) 4.3 GB
ENCFF179FEQ.bigWig bigWig (plus strand signal of unique reads) 63.6 MB
ENCFF191ZAB.bigWig bigWig (plus strand signal of all reads) 75.8 MB
ENCFF198BSV.tsv tsv (gene quantifications) 9.5 MB
ENCFF202TKA.bam bam (alignments) 5.6 GB
ENCFF208JUM.bigWig bigWig (minus strand signal of all reads) 68.0 MB
ENCFF214RCT.fastq fastq (reads) 3.1 GB
ENCFF223QOC.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF232BMB.tsv tsv (transcript quantifications) 25.0 MB
ENCFF237RZC.bam bam (alignments) 4.3 GB
ENCFF270DKT.bigWig bigWig (plus strand signal of all reads) 65.3 MB
ENCFF272GCL.bam bam (alignments) 4.3 GB
ENCFF275YEA.bigWig bigWig (plus strand signal of unique reads) 62.2 MB
ENCFF277TEB.bigWig bigWig (plus strand signal of unique reads) 67.9 MB
ENCFF280WNJ.bigWig bigWig (minus strand signal of all reads) 66.5 MB
ENCFF287WVF.bigWig bigWig (plus strand signal of unique reads) 60.6 MB
ENCFF290RYH.bigWig bigWig (minus strand signal of unique reads) 65.9 MB
ENCFF299XMK.tar tar (differential splicing quantifications) 2.6 MB
ENCFF310LZC.bam bam (transcriptome alignments) 6.1 GB
ENCFF325LQL.tar tar (differential splicing quantifications) 14.1 MB
ENCFF325VWQ.bigWig bigWig (minus strand signal of unique reads) 60.2 MB
ENCFF326JLF.bigWig bigWig (plus strand signal of unique reads) 68.0 MB
ENCFF338FNS.bigWig bigWig (minus strand signal of all reads) 61.4 MB
ENCFF343OAG.bam bam (alignments) 5.1 GB
ENCFF347LZC.bigWig bigWig (plus strand signal of unique reads) 61.4 MB
ENCFF351OBL.tsv tsv (gene quantifications) 10.4 MB
ENCFF356OTI.bigWig bigWig (minus strand signal of all reads) 65.8 MB
ENCFF356QTS.bam bam (alignments) 5.2 GB
ENCFF362TLS.bam bam (alignments) 5.2 GB
ENCFF366CZV.tsv tsv (transcript quantifications) 25.0 MB
ENCFF375ENS.bigWig bigWig (minus strand signal of unique reads) 56.6 MB
ENCFF380JTO.tar tar (differential splicing quantifications) 3.1 MB
ENCFF400NKI.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF408HIN.bam bam (transcriptome alignments) 6.1 GB
ENCFF408XYF.tsv tsv (transcript quantifications) 25.4 MB
ENCFF411YGT.bigWig bigWig (minus strand signal of all reads) 74.4 MB
ENCFF427XAT.bigWig bigWig (minus strand signal of unique reads) 65.7 MB
ENCFF441JBL.tsv tsv (gene quantifications) 10.4 MB
ENCFF454MBT.bam bam (transcriptome alignments) 7.4 GB
ENCFF467ESY.bigWig bigWig (minus strand signal of unique reads) 59.1 MB
ENCFF478ISQ.bigWig bigWig (plus strand signal of all reads) 75.6 MB
ENCFF493MAE.tsv tsv (transcript quantifications) 29.9 MB
ENCFF496UIT.tsv tsv (gene quantifications) 9.1 MB
ENCFF503DLR.bigWig bigWig (minus strand signal of all reads) 64.5 MB
ENCFF516IRO.bigWig bigWig (minus strand signal of unique reads) 66.7 MB
ENCFF525BYQ.fastq fastq (reads) 3.0 GB
ENCFF529SDU.bigWig bigWig (minus strand signal of unique reads) 66.5 MB
ENCFF574UFA.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF594IBL.bam bam (alignments) 5.6 GB
ENCFF643IQM.fastq fastq (reads) 3.1 GB
ENCFF657QSJ.tsv tsv (gene quantifications) 9.5 MB
ENCFF658SNO.bigWig bigWig (minus strand signal of all reads) 74.9 MB
ENCFF659HYU.bigWig bigWig (minus strand signal of unique reads) 62.4 MB
ENCFF679LRU.bigWig bigWig (plus strand signal of unique reads) 67.4 MB
ENCFF693RIG.bigWig bigWig (plus strand signal of all reads) 69.1 MB
ENCFF712LWW.bigWig bigWig (plus strand signal of all reads) 74.7 MB
ENCFF718KHZ.tsv tsv (transcript quantifications) 27.3 MB
ENCFF720YFV.bam bam (transcriptome alignments) 6.5 GB
ENCFF753QFU.bigWig bigWig (plus strand signal of all reads) 65.6 MB
ENCFF795XDD.tsv tsv (transcript quantifications) 27.3 MB
ENCFF816EHQ.bam bam (alignments) 4.3 GB
ENCFF841IOJ.bigWig bigWig (plus strand signal of unique reads) 68.3 MB
ENCFF857BFT.bigWig bigWig (minus strand signal of all reads) 74.4 MB
ENCFF887QPX.tsv tsv (differential expression quantifications) 4.2 MB
ENCFF893GRA.bigWig bigWig (minus strand signal of all reads) 74.7 MB
ENCFF897AKH.bigWig bigWig (plus strand signal of unique reads) 57.9 MB
ENCFF905IHS.bigWig bigWig (plus strand signal of all reads) 62.5 MB
ENCFF907LAX.bam bam (alignments) 4.3 GB
ENCFF925IJI.bigWig bigWig (plus strand signal of all reads) 67.5 MB
ENCFF936HGG.bigWig bigWig (plus strand signal of all reads) 75.6 MB
ENCFF940VDD.fastq fastq (reads) 3.0 GB
ENCFF941OJL.bigWig bigWig (plus strand signal of unique reads) 67.2 MB
ENCFF942AVR.bam bam (alignments) 5.1 GB
ENCFF942ZEV.bigWig bigWig (minus strand signal of unique reads) 60.8 MB
ENCFF948NOI.bigWig bigWig (plus strand signal of all reads) 66.9 MB
ENCFF981DFQ.bigWig bigWig (plus strand signal of all reads) 75.9 MB
ENCSR486AIO ENCSR · via encode_api

shRNA knockdown against RPS19 in HepG2 cells followed by RNA-seq. (RPS19_BGHLV16)

Homo sapiens

92 data files
FileTypeSize
ENCFF002JIE.tsv tsv (transcript quantifications) 25.3 MB
ENCFF007MJT.tsv tsv (transcript quantifications) 24.9 MB
ENCFF035GYG.tsv tsv (transcript quantifications) 24.9 MB
ENCFF038NRN.tsv tsv (gene quantifications) 9.4 MB
ENCFF048LRE.tsv tsv (differential expression quantifications) 3.0 MB
ENCFF066TMP.tsv tsv (gene quantifications) 9.1 MB
ENCFF071XAU.tsv tsv (gene quantifications) 10.4 MB
ENCFF078NUI.tsv tsv (transcript quantifications) 27.3 MB
ENCFF090RFU.bigWig bigWig (minus strand signal of all reads) 77.9 MB
ENCFF104EGP.fastq fastq (reads) 2.2 GB
ENCFF108FFG.tar tar (differential splicing quantifications) 13.2 MB
ENCFF138BJQ.bigWig bigWig (plus strand signal of unique reads) 71.6 MB
ENCFF151SNM.tsv tsv (gene quantifications) 9.1 MB
ENCFF152SCN.bam bam (transcriptome alignments) 3.9 GB
ENCFF168YCZ.tsv tsv (differential expression quantifications) 4.3 MB
ENCFF173BTB.bigWig bigWig (minus strand signal of unique reads) 69.3 MB
ENCFF183LTB.bigWig bigWig (plus strand signal of unique reads) 71.0 MB
ENCFF190GPK.bigWig bigWig (plus strand signal of unique reads) 58.5 MB
ENCFF194JPG.bigWig bigWig (minus strand signal of all reads) 61.1 MB
ENCFF218RHP.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF247NEJ.bigWig bigWig (plus strand signal of unique reads) 62.6 MB
ENCFF278XKX.tsv tsv (differential expression quantifications) 2.0 MB
ENCFF316TRR.bigWig bigWig (plus strand signal of unique reads) 62.5 MB
ENCFF329SBN.bigWig bigWig (minus strand signal of unique reads) 57.3 MB
ENCFF331JSI.bigWig bigWig (minus strand signal of all reads) 70.1 MB
ENCFF341KVW.bam bam (alignments) 2.7 GB
ENCFF366TRL.bam bam (alignments) 3.2 GB
ENCFF378DGC.bigWig bigWig (plus strand signal of all reads) 70.7 MB
ENCFF430UYO.bam bam (alignments) 3.8 GB
ENCFF433SGW.bigWig bigWig (plus strand signal of unique reads) 68.1 MB
ENCFF435PBO.bigWig bigWig (plus strand signal of all reads) 63.9 MB
ENCFF443AOY.bam bam (alignments) 3.2 GB
ENCFF478IRA.tsv tsv (transcript quantifications) 29.8 MB
ENCFF492KVD.bigWig bigWig (plus strand signal of unique reads) 64.6 MB
ENCFF494ZRW.fastq fastq (reads) 1.7 GB
ENCFF498WZO.bigWig bigWig (minus strand signal of unique reads) 65.9 MB
ENCFF504RMQ.bigWig bigWig (plus strand signal of unique reads) 66.8 MB
ENCFF515WCE.bigWig bigWig (plus strand signal of all reads) 68.7 MB
ENCFF530KJC.bigWig bigWig (minus strand signal of unique reads) 54.5 MB
ENCFF542LEF.tsv tsv (differential expression quantifications) 1.8 MB
ENCFF546EQZ.tsv tsv (transcript quantifications) 29.8 MB
ENCFF551ITH.bigWig bigWig (plus strand signal of all reads) 79.6 MB
ENCFF558WIP.bam bam (alignments) 2.7 GB
ENCFF562SMT.tar tar (differential splicing quantifications) 2.9 MB
ENCFF571HPX.bigWig bigWig (plus strand signal of all reads) 69.8 MB
ENCFF583ZJL.tsv tsv (gene quantifications) 10.4 MB
ENCFF597BQP.bigWig bigWig (minus strand signal of unique reads) 68.7 MB
ENCFF602NGL.fastq fastq (reads) 1.8 GB
ENCFF603QYX.bigWig bigWig (plus strand signal of all reads) 60.7 MB
ENCFF621OLB.bam bam (transcriptome alignments) 4.6 GB
ENCFF647HAI.bigWig bigWig (plus strand signal of all reads) 69.7 MB
ENCFF648TQV.bigWig bigWig (plus strand signal of all reads) 62.4 MB
ENCFF649UVT.bam bam (alignments) 3.8 GB
ENCFF650VVM.bam bam (alignments) 3.2 GB
ENCFF651FGU.bigWig bigWig (minus strand signal of unique reads) 60.7 MB
ENCFF661XGA.bigWig bigWig (plus strand signal of unique reads) 59.1 MB
ENCFF695KMN.tsv tsv (transcript quantifications) 25.3 MB
ENCFF696NOW.bam bam (transcriptome alignments) 4.6 GB
ENCFF698OXD.bigWig bigWig (plus strand signal of unique reads) 71.4 MB
ENCFF700OKF.bigWig bigWig (minus strand signal of all reads) 67.0 MB
ENCFF701IPX.tsv tsv (transcript quantifications) 27.4 MB
ENCFF707VTW.bam bam (alignments) 3.8 GB
ENCFF714NHK.bam bam (transcriptome alignments) 4.4 GB
ENCFF733YPP.bigWig bigWig (plus strand signal of all reads) 78.3 MB
ENCFF746OKH.bigWig bigWig (minus strand signal of unique reads) 60.5 MB
ENCFF751DYA.bigWig bigWig (plus strand signal of all reads) 71.8 MB
ENCFF753SSZ.bam bam (transcriptome alignments) 5.2 GB
ENCFF758HSZ.bigWig bigWig (plus strand signal of unique reads) 63.1 MB
ENCFF761IHV.bigWig bigWig (minus strand signal of all reads) 67.8 MB
ENCFF764OON.bam bam (alignments) 3.2 GB
ENCFF765SCQ.bam bam (alignments) 3.2 GB
ENCFF773YLC.bam bam (alignments) 2.7 GB
ENCFF782DTL.bigWig bigWig (minus strand signal of unique reads) 69.2 MB
ENCFF789UKV.bigWig bigWig (minus strand signal of all reads) 76.8 MB
ENCFF798PFD.bigWig bigWig (minus strand signal of unique reads) 61.2 MB
ENCFF812OTX.bigWig bigWig (minus strand signal of all reads) 68.2 MB
ENCFF830TPH.bigWig bigWig (plus strand signal of all reads) 69.2 MB
ENCFF841BXA.bigWig bigWig (minus strand signal of all reads) 62.3 MB
ENCFF845GQM.fastq fastq (reads) 2.1 GB
ENCFF848KWB.bigWig bigWig (minus strand signal of all reads) 77.9 MB
ENCFF854OST.bigWig bigWig (minus strand signal of unique reads) 64.8 MB
ENCFF862SQU.bigWig bigWig (plus strand signal of unique reads) 56.3 MB
ENCFF864QCL.bam bam (alignments) 3.2 GB
ENCFF886GPS.bam bam (transcriptome alignments) 3.9 GB
ENCFF913QDS.bigWig bigWig (plus strand signal of all reads) 79.6 MB
ENCFF937ETQ.tar tar (differential splicing quantifications) 3.4 MB
ENCFF946NFC.bigWig bigWig (minus strand signal of all reads) 69.1 MB
ENCFF949KLQ.tsv tsv (gene quantifications) 9.4 MB
ENCFF953RUT.bigWig bigWig (minus strand signal of all reads) 68.2 MB
ENCFF957DJU.bigWig bigWig (minus strand signal of all reads) 59.3 MB
ENCFF977DPA.bigWig bigWig (minus strand signal of unique reads) 62.5 MB
ENCFF986SQK.bigWig bigWig (minus strand signal of unique reads) 56.9 MB
ENCSR012DAF ENCSR · via encode_api

RNA-seq on HepG2 cells treated with an shRNA knockdown against APOBEC3C. (APOBE-BGHLV22)

Homo sapiens

92 data files
FileTypeSize
ENCFF005JZM.bam bam (transcriptome alignments) 6.4 GB
ENCFF026DII.bam bam (transcriptome alignments) 5.8 GB
ENCFF035YWB.tsv tsv (transcript quantifications) 25.2 MB
ENCFF053GHY.bigWig bigWig (plus strand signal of unique reads) 69.7 MB
ENCFF074RGH.bigWig bigWig (minus strand signal of unique reads) 76.0 MB
ENCFF076YZD.tsv tsv (transcript quantifications) 24.9 MB
ENCFF082JJQ.bam bam (alignments) 4.9 GB
ENCFF090ALR.bigWig bigWig (minus strand signal of all reads) 69.2 MB
ENCFF090VTR.bigWig bigWig (plus strand signal of all reads) 69.8 MB
ENCFF091ZGN.bigWig bigWig (plus strand signal of unique reads) 73.2 MB
ENCFF108HPX.bam bam (alignments) 3.5 GB
ENCFF118EEY.bam bam (alignments) 4.1 GB
ENCFF184BKE.bigWig bigWig (minus strand signal of unique reads) 68.5 MB
ENCFF184GLI.bigWig bigWig (minus strand signal of unique reads) 65.2 MB
ENCFF187LHE.bam bam (alignments) 3.4 GB
ENCFF191YXY.bigWig bigWig (minus strand signal of all reads) 84.3 MB
ENCFF227KPX.bigWig bigWig (minus strand signal of all reads) 76.1 MB
ENCFF276ZFM.tsv tsv (gene quantifications) 9.1 MB
ENCFF286DJK.bam bam (alignments) 4.0 GB
ENCFF288JRF.tsv tsv (transcript quantifications) 24.8 MB
ENCFF301ZHO.bigWig bigWig (plus strand signal of all reads) 76.7 MB
ENCFF303CQF.bigWig bigWig (minus strand signal of unique reads) 69.1 MB
ENCFF315TAR.tsv tsv (gene quantifications) 9.1 MB
ENCFF321VPA.tsv tsv (gene quantifications) 10.4 MB
ENCFF325KNC.bam bam (alignments) 4.0 GB
ENCFF335UKB.bam bam (alignments) 4.0 GB
ENCFF340FZF.tsv tsv (transcript quantifications) 29.7 MB
ENCFF346UUW.bigWig bigWig (plus strand signal of unique reads) 70.0 MB
ENCFF348IML.bigWig bigWig (minus strand signal of unique reads) 68.9 MB
ENCFF355XPI.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF360ASR.bam bam (alignments) 4.7 GB
ENCFF365DYX.tsv tsv (gene quantifications) 10.4 MB
ENCFF365ZLE.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF381FEE.bigWig bigWig (minus strand signal of all reads) 69.7 MB
ENCFF388DYX.fastq fastq (reads) 2.6 GB
ENCFF388VTL.bigWig bigWig (minus strand signal of unique reads) 62.5 MB
ENCFF402ZKK.bigWig bigWig (minus strand signal of all reads) 75.8 MB
ENCFF408ARC.fastq fastq (reads) 2.1 GB
ENCFF411WBV.tsv tsv (transcript quantifications) 29.8 MB
ENCFF437DZP.tar tar (differential splicing quantifications) 3.5 MB
ENCFF448GLE.bigWig bigWig (plus strand signal of unique reads) 65.9 MB
ENCFF467IWJ.bigWig bigWig (minus strand signal of all reads) 76.2 MB
ENCFF478TQB.fastq fastq (reads) 2.5 GB
ENCFF482JRS.tsv tsv (differential expression quantifications) 4.2 MB
ENCFF486NLR.bigWig bigWig (plus strand signal of unique reads) 77.4 MB
ENCFF490HNQ.bigWig bigWig (plus strand signal of all reads) 67.4 MB
ENCFF501RAF.bigWig bigWig (plus strand signal of all reads) 76.9 MB
ENCFF513LIK.bigWig bigWig (plus strand signal of unique reads) 66.4 MB
ENCFF523NLI.bigWig bigWig (minus strand signal of unique reads) 68.5 MB
ENCFF541IOJ.bigWig bigWig (plus strand signal of all reads) 76.8 MB
ENCFF550NYY.fastq fastq (reads) 2.2 GB
ENCFF559AID.tsv tsv (differential expression quantifications) 2.8 MB
ENCFF571NRM.tar tar (differential splicing quantifications) 2.9 MB
ENCFF577IHD.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF590FKK.bigWig bigWig (minus strand signal of unique reads) 71.9 MB
ENCFF592QXM.bigWig bigWig (minus strand signal of unique reads) 75.4 MB
ENCFF602CBS.tsv tsv (gene quantifications) 9.4 MB
ENCFF616TLW.bigWig bigWig (minus strand signal of unique reads) 72.4 MB
ENCFF622CYH.bigWig bigWig (minus strand signal of unique reads) 75.7 MB
ENCFF626RHP.bigWig bigWig (plus strand signal of all reads) 85.2 MB
ENCFF635CMF.bam bam (transcriptome alignments) 4.7 GB
ENCFF650QSA.bigWig bigWig (plus strand signal of all reads) 85.2 MB
ENCFF650YWY.bam bam (transcriptome alignments) 5.2 GB
ENCFF654SCY.bigWig bigWig (minus strand signal of all reads) 84.5 MB
ENCFF658UKW.bigWig bigWig (minus strand signal of all reads) 77.4 MB
ENCFF677LFS.bam bam (transcriptome alignments) 5.8 GB
ENCFF678ZKP.bigWig bigWig (plus strand signal of unique reads) 73.8 MB
ENCFF752NXI.bigWig bigWig (plus strand signal of unique reads) 69.7 MB
ENCFF752NYI.bigWig bigWig (minus strand signal of all reads) 84.2 MB
ENCFF759RJN.bigWig bigWig (minus strand signal of all reads) 75.7 MB
ENCFF762UEJ.tsv tsv (transcript quantifications) 25.3 MB
ENCFF772ENG.bam bam (alignments) 3.4 GB
ENCFF778BTU.bigWig bigWig (plus strand signal of all reads) 70.4 MB
ENCFF786XGC.bigWig bigWig (plus strand signal of all reads) 78.3 MB
ENCFF808KAW.tsv tsv (transcript quantifications) 27.3 MB
ENCFF809QFV.bigWig bigWig (plus strand signal of all reads) 85.1 MB
ENCFF825EWG.bigWig bigWig (minus strand signal of all reads) 76.1 MB
ENCFF833UXW.bam bam (alignments) 3.9 GB
ENCFF847APS.tsv tsv (gene quantifications) 9.4 MB
ENCFF873AZG.bam bam (alignments) 4.9 GB
ENCFF887JLA.bam bam (alignments) 4.0 GB
ENCFF900BKX.bigWig bigWig (minus strand signal of all reads) 66.6 MB
ENCFF910TOF.bigWig bigWig (plus strand signal of all reads) 76.8 MB
ENCFF922WMP.bigWig bigWig (plus strand signal of unique reads) 76.8 MB
ENCFF926KYE.bigWig bigWig (plus strand signal of unique reads) 63.7 MB
ENCFF951NEO.tar tar (differential splicing quantifications) 15.0 MB
ENCFF953HHZ.bigWig bigWig (plus strand signal of unique reads) 77.1 MB
ENCFF955QNV.tsv tsv (transcript quantifications) 27.3 MB
ENCFF960DTF.bigWig bigWig (plus strand signal of all reads) 76.3 MB
ENCFF965ECT.bigWig bigWig (plus strand signal of unique reads) 70.6 MB
ENCFF991MVH.bigWig bigWig (minus strand signal of unique reads) 64.9 MB
ENCFF992KCT.bam bam (transcriptome alignments) 4.7 GB
ENCSR279HMU ENCSR · via encode_api

Control shRNA against no target in HepG2 cells followed by RNA-seq. (non-target-BGHLV22)

Homo sapiens

84 data files
FileTypeSize
ENCFF005HGD.bigWig bigWig (minus strand signal of all reads) 74.5 MB
ENCFF006BJQ.fastq fastq (reads) 2.3 GB
ENCFF027MIW.bam bam (transcriptome alignments) 4.9 GB
ENCFF029QJN.tsv tsv (gene quantifications) 10.4 MB
ENCFF034ZKA.bigWig bigWig (minus strand signal of all reads) 77.6 MB
ENCFF041EAI.bam bam (transcriptome alignments) 5.7 GB
ENCFF088PSO.bigWig bigWig (minus strand signal of all reads) 67.8 MB
ENCFF094ILL.bigWig bigWig (plus strand signal of all reads) 78.4 MB
ENCFF095QET.tsv tsv (transcript quantifications) 25.3 MB
ENCFF121FWW.bigWig bigWig (minus strand signal of unique reads) 73.8 MB
ENCFF130RIA.bigWig bigWig (plus strand signal of unique reads) 71.5 MB
ENCFF143VMA.bigWig bigWig (plus strand signal of all reads) 76.2 MB
ENCFF154UWD.tsv tsv (gene quantifications) 10.4 MB
ENCFF160CLZ.tsv tsv (gene quantifications) 9.4 MB
ENCFF173ARA.bam bam (transcriptome alignments) 5.1 GB
ENCFF173QXX.bigWig bigWig (minus strand signal of unique reads) 63.2 MB
ENCFF174TJE.bigWig bigWig (plus strand signal of all reads) 71.4 MB
ENCFF175VCY.bigWig bigWig (plus strand signal of all reads) 82.0 MB
ENCFF183ASS.bigWig bigWig (plus strand signal of unique reads) 75.1 MB
ENCFF201SLG.bigWig bigWig (minus strand signal of unique reads) 73.2 MB
ENCFF204IWG.bigWig bigWig (minus strand signal of unique reads) 65.9 MB
ENCFF222QST.tsv tsv (transcript quantifications) 24.9 MB
ENCFF259JKZ.fastq fastq (reads) 2.1 GB
ENCFF271EDI.fastq fastq (reads) 2.2 GB
ENCFF286KOT.tsv tsv (gene quantifications) 9.1 MB
ENCFF295SFA.bam bam (alignments) 3.5 GB
ENCFF306KDT.bigWig bigWig (plus strand signal of unique reads) 67.1 MB
ENCFF309PVV.bigWig bigWig (plus strand signal of unique reads) 66.5 MB
ENCFF336COS.bigWig bigWig (minus strand signal of unique reads) 65.4 MB
ENCFF340RWX.tsv tsv (gene quantifications) 9.1 MB
ENCFF348TKF.bigWig bigWig (plus strand signal of all reads) 68.6 MB
ENCFF350HCB.bam bam (transcriptome alignments) 5.5 GB
ENCFF366MJN.fastq fastq (reads) 2.3 GB
ENCFF391LMS.bigWig bigWig (minus strand signal of unique reads) 69.4 MB
ENCFF409NJN.tsv tsv (transcript quantifications) 25.3 MB
ENCFF420VMT.bam bam (alignments) 4.2 GB
ENCFF450VCF.bigWig bigWig (plus strand signal of unique reads) 74.5 MB
ENCFF454IWM.bigWig bigWig (plus strand signal of unique reads) 70.8 MB
ENCFF458GFU.bigWig bigWig (minus strand signal of all reads) 81.4 MB
ENCFF477NIE.bigWig bigWig (plus strand signal of unique reads) 70.9 MB
ENCFF481PMW.bam bam (alignments) 3.5 GB
ENCFF498REX.bigWig bigWig (minus strand signal of unique reads) 73.7 MB
ENCFF501COM.bam bam (alignments) 4.2 GB
ENCFF504ZEB.bigWig bigWig (minus strand signal of all reads) 81.3 MB
ENCFF507WIJ.bam bam (transcriptome alignments) 5.0 GB
ENCFF554SAQ.bigWig bigWig (minus strand signal of unique reads) 69.8 MB
ENCFF578PLB.bam bam (alignments) 3.6 GB
ENCFF583FMT.bigWig bigWig (minus strand signal of all reads) 77.6 MB
ENCFF610JDV.bam bam (alignments) 3.5 GB
ENCFF631IUK.bigWig bigWig (plus strand signal of all reads) 71.6 MB
ENCFF632RBM.bigWig bigWig (plus strand signal of all reads) 77.6 MB
ENCFF633CYE.bigWig bigWig (plus strand signal of all reads) 70.6 MB
ENCFF645UHW.bam bam (alignments) 3.5 GB
ENCFF674DEY.bigWig bigWig (plus strand signal of unique reads) 66.7 MB
ENCFF688UMN.bigWig bigWig (minus strand signal of unique reads) 69.3 MB
ENCFF702FUN.tsv tsv (transcript quantifications) 27.3 MB
ENCFF705NKK.tsv tsv (transcript quantifications) 24.9 MB
ENCFF718NLV.bam bam (transcriptome alignments) 5.1 GB
ENCFF728ZHI.bigWig bigWig (plus strand signal of all reads) 82.0 MB
ENCFF730HUV.tsv tsv (gene quantifications) 9.4 MB
ENCFF753IUK.tsv tsv (transcript quantifications) 29.8 MB
ENCFF760KSO.bam bam (alignments) 3.6 GB
ENCFF765LJF.bigWig bigWig (minus strand signal of all reads) 76.9 MB
ENCFF777XWE.bigWig bigWig (plus strand signal of all reads) 75.2 MB
ENCFF778FJE.bigWig bigWig (minus strand signal of unique reads) 70.2 MB
ENCFF788NTX.bigWig bigWig (minus strand signal of unique reads) 69.0 MB
ENCFF808LZV.tsv tsv (transcript quantifications) 27.3 MB
ENCFF838IIX.tsv tsv (transcript quantifications) 29.8 MB
ENCFF842RKJ.bigWig bigWig (minus strand signal of all reads) 70.5 MB
ENCFF846OHU.bigWig bigWig (minus strand signal of unique reads) 65.4 MB
ENCFF866JPC.bigWig bigWig (plus strand signal of all reads) 82.0 MB
ENCFF868KBY.bigWig bigWig (minus strand signal of all reads) 70.8 MB
ENCFF869IKC.bam bam (alignments) 4.1 GB
ENCFF880FPW.bigWig bigWig (plus strand signal of unique reads) 70.6 MB
ENCFF883ZPE.bigWig bigWig (plus strand signal of unique reads) 74.9 MB
ENCFF889RCD.bigWig bigWig (plus strand signal of unique reads) 70.3 MB
ENCFF895FAL.bigWig bigWig (plus strand signal of all reads) 78.4 MB
ENCFF928QET.bigWig bigWig (minus strand signal of all reads) 69.9 MB
ENCFF929GRT.bigWig bigWig (minus strand signal of all reads) 75.4 MB
ENCFF931LCX.bam bam (alignments) 4.2 GB
ENCFF931YGM.bam bam (alignments) 4.2 GB
ENCFF971VAS.bigWig bigWig (plus strand signal of unique reads) 64.7 MB
ENCFF975DFH.bigWig bigWig (minus strand signal of all reads) 81.3 MB
ENCFF996UTY.bam bam (alignments) 4.1 GB
ENCSR222ABK ENCSR · via encode_api

RNA-seq on K562 cells treated with an shRNA knockdown against HSPD1. (HSPD1_BGKLV29)

Homo sapiens

92 data files
FileTypeSize
ENCFF045FHM.tsv tsv (gene quantifications) 9.5 MB
ENCFF052COJ.bigWig bigWig (minus strand signal of unique reads) 95.3 MB
ENCFF061WBT.bigWig bigWig (minus strand signal of all reads) 107.0 MB
ENCFF065NML.bigWig bigWig (minus strand signal of unique reads) 89.8 MB
ENCFF093TTX.bam bam (transcriptome alignments) 9.3 GB
ENCFF097IXL.fastq fastq (reads) 3.9 GB
ENCFF097WHH.bigWig bigWig (plus strand signal of all reads) 90.2 MB
ENCFF108CGY.bigWig bigWig (plus strand signal of unique reads) 97.3 MB
ENCFF109ZKD.bigWig bigWig (minus strand signal of all reads) 109.3 MB
ENCFF113HNJ.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF115ESX.bam bam (alignments) 5.5 GB
ENCFF129RYW.bam bam (alignments) 5.7 GB
ENCFF130YDG.bigWig bigWig (minus strand signal of unique reads) 95.6 MB
ENCFF140FFX.bigWig bigWig (minus strand signal of all reads) 97.4 MB
ENCFF142VAN.bigWig bigWig (plus strand signal of unique reads) 87.7 MB
ENCFF145NSU.tsv tsv (gene quantifications) 9.5 MB
ENCFF157TFV.bam bam (alignments) 4.5 GB
ENCFF172DNL.bigWig bigWig (plus strand signal of unique reads) 97.4 MB
ENCFF206OHM.bigWig bigWig (minus strand signal of all reads) 96.8 MB
ENCFF217TPQ.bigWig bigWig (minus strand signal of unique reads) 80.3 MB
ENCFF220TOK.tsv tsv (transcript quantifications) 29.9 MB
ENCFF257PTT.bigWig bigWig (minus strand signal of all reads) 85.5 MB
ENCFF261OPN.bigWig bigWig (plus strand signal of unique reads) 87.8 MB
ENCFF264VOZ.bigWig bigWig (plus strand signal of all reads) 97.9 MB
ENCFF275EYF.bam bam (transcriptome alignments) 7.6 GB
ENCFF281THJ.tsv tsv (gene quantifications) 9.1 MB
ENCFF306WBK.bigWig bigWig (minus strand signal of all reads) 99.5 MB
ENCFF309YKY.bigWig bigWig (plus strand signal of all reads) 101.0 MB
ENCFF324FKU.bam bam (alignments) 6.6 GB
ENCFF333ZYR.bigWig bigWig (plus strand signal of all reads) 110.4 MB
ENCFF363SAX.tsv tsv (transcript quantifications) 25.4 MB
ENCFF379EGW.bigWig bigWig (plus strand signal of all reads) 97.8 MB
ENCFF380IEQ.bam bam (transcriptome alignments) 9.2 GB
ENCFF381KVN.bigWig bigWig (minus strand signal of unique reads) 86.1 MB
ENCFF393MLZ.bigWig bigWig (plus strand signal of unique reads) 93.3 MB
ENCFF399KLM.tsv tsv (gene quantifications) 10.4 MB
ENCFF405WTK.bam bam (transcriptome alignments) 7.7 GB
ENCFF410GCS.bigWig bigWig (minus strand signal of unique reads) 81.3 MB
ENCFF417BVU.bam bam (alignments) 5.3 GB
ENCFF429WBB.bigWig bigWig (minus strand signal of unique reads) 91.3 MB
ENCFF452YNE.tsv tsv (gene quantifications) 9.1 MB
ENCFF471KTZ.fastq fastq (reads) 3.3 GB
ENCFF475GCV.bigWig bigWig (plus strand signal of unique reads) 87.1 MB
ENCFF483XWI.bam bam (transcriptome alignments) 10.6 GB
ENCFF529QUK.tsv tsv (differential expression quantifications) 4.4 MB
ENCFF541FLY.bigWig bigWig (minus strand signal of unique reads) 78.4 MB
ENCFF546VYP.tsv tsv (transcript quantifications) 27.5 MB
ENCFF551OWX.bigWig bigWig (plus strand signal of all reads) 87.1 MB
ENCFF568IWG.bigWig bigWig (minus strand signal of all reads) 96.9 MB
ENCFF574QFP.bigWig bigWig (minus strand signal of all reads) 96.1 MB
ENCFF574QUY.bigWig bigWig (plus strand signal of all reads) 86.9 MB
ENCFF590TIJ.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF602RAR.bigWig bigWig (plus strand signal of unique reads) 91.4 MB
ENCFF621UVO.bigWig bigWig (plus strand signal of unique reads) 83.1 MB
ENCFF626OCB.bam bam (alignments) 5.4 GB
ENCFF628IGI.bigWig bigWig (minus strand signal of unique reads) 96.0 MB
ENCFF633UHE.bigWig bigWig (plus strand signal of all reads) 97.7 MB
ENCFF635OSD.bam bam (transcriptome alignments) 8.8 GB
ENCFF639WKU.bam bam (alignments) 5.3 GB
ENCFF649VUM.tsv tsv (gene quantifications) 10.4 MB
ENCFF653UCG.tsv tsv (transcript quantifications) 25.0 MB
ENCFF661LPO.tsv tsv (transcript quantifications) 29.9 MB
ENCFF661WVP.tsv tsv (differential expression quantifications) 3.0 MB
ENCFF678IOI.fastq fastq (reads) 3.9 GB
ENCFF681GOD.bigWig bigWig (minus strand signal of all reads) 86.1 MB
ENCFF684ZIR.tsv tsv (transcript quantifications) 25.4 MB
ENCFF687THT.bam bam (alignments) 4.5 GB
ENCFF732LLC.bigWig bigWig (minus strand signal of all reads) 95.9 MB
ENCFF733PZZ.tar tar (differential splicing quantifications) 4.2 MB
ENCFF756XFA.bigWig bigWig (plus strand signal of all reads) 97.0 MB
ENCFF759EJG.bigWig bigWig (minus strand signal of unique reads) 85.9 MB
ENCFF794WLV.tsv tsv (transcript quantifications) 27.4 MB
ENCFF796SEC.tar tar (differential splicing quantifications) 16.2 MB
ENCFF798RCN.tsv tsv (transcript quantifications) 25.0 MB
ENCFF833AAY.bigWig bigWig (minus strand signal of unique reads) 88.3 MB
ENCFF842GWK.tar tar (differential splicing quantifications) 5.2 MB
ENCFF845TDS.bigWig bigWig (plus strand signal of all reads) 110.4 MB
ENCFF855LLH.bigWig bigWig (plus strand signal of all reads) 98.4 MB
ENCFF860DAE.bam bam (alignments) 6.7 GB
ENCFF863SOX.bigWig bigWig (plus strand signal of unique reads) 80.3 MB
ENCFF882NQI.bigWig bigWig (minus strand signal of unique reads) 85.5 MB
ENCFF888ZQY.bigWig bigWig (plus strand signal of unique reads) 81.8 MB
ENCFF890AUT.bigWig bigWig (plus strand signal of all reads) 108.1 MB
ENCFF892GRF.bam bam (alignments) 6.7 GB
ENCFF897YAS.fastq fastq (reads) 3.2 GB
ENCFF900DHC.bigWig bigWig (minus strand signal of all reads) 109.4 MB
ENCFF903KWV.bigWig bigWig (plus strand signal of unique reads) 97.8 MB
ENCFF907VFV.tsv tsv (differential expression quantifications) 2.0 MB
ENCFF912LYZ.bigWig bigWig (minus strand signal of all reads) 88.9 MB
ENCFF912RTR.bam bam (alignments) 4.5 GB
ENCFF940WSQ.bam bam (alignments) 5.7 GB
ENCFF952KDO.bigWig bigWig (plus strand signal of unique reads) 90.4 MB
ENCSR958KSY ENCSR · via encode_api

RNA-seq on HepG2 cells treated with an shRNA knockdown against AKAP8. (AKAP8_BGHLV27)

Homo sapiens

92 data files
FileTypeSize
ENCFF012MPI.bigWig bigWig (plus strand signal of unique reads) 76.1 MB
ENCFF023IDA.tsv tsv (transcript quantifications) 27.3 MB
ENCFF028MDD.tsv tsv (gene quantifications) 10.4 MB
ENCFF038TZT.bigWig bigWig (plus strand signal of all reads) 92.1 MB
ENCFF042JHZ.bigWig bigWig (minus strand signal of all reads) 98.1 MB
ENCFF042UOA.bigWig bigWig (plus strand signal of unique reads) 81.7 MB
ENCFF043URF.bam bam (transcriptome alignments) 8.7 GB
ENCFF046EFM.bam bam (transcriptome alignments) 7.6 GB
ENCFF051DXZ.bigWig bigWig (minus strand signal of all reads) 82.9 MB
ENCFF063JBI.tsv tsv (gene quantifications) 9.1 MB
ENCFF081ZQZ.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF086VMM.bigWig bigWig (plus strand signal of all reads) 83.7 MB
ENCFF093KVJ.bigWig bigWig (plus strand signal of all reads) 99.4 MB
ENCFF093STD.bam bam (alignments) 4.6 GB
ENCFF108XKO.bigWig bigWig (minus strand signal of unique reads) 69.8 MB
ENCFF115MYX.tsv tsv (gene quantifications) 10.4 MB
ENCFF129DXU.bigWig bigWig (minus strand signal of unique reads) 73.3 MB
ENCFF137LDU.bam bam (transcriptome alignments) 5.7 GB
ENCFF139VZJ.bam bam (transcriptome alignments) 7.6 GB
ENCFF156XGG.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF164AKX.bigWig bigWig (minus strand signal of unique reads) 66.7 MB
ENCFF166HRL.bam bam (alignments) 3.5 GB
ENCFF174NRB.tsv tsv (transcript quantifications) 24.9 MB
ENCFF177XWM.bigWig bigWig (minus strand signal of unique reads) 69.4 MB
ENCFF192EKA.bam bam (transcriptome alignments) 5.7 GB
ENCFF210THQ.fastq fastq (reads) 2.5 GB
ENCFF211UNV.bam bam (alignments) 4.4 GB
ENCFF227TKP.bigWig bigWig (minus strand signal of all reads) 82.5 MB
ENCFF250RYI.bigWig bigWig (plus strand signal of unique reads) 75.1 MB
ENCFF259FUX.tsv tsv (transcript quantifications) 24.9 MB
ENCFF285QAM.bigWig bigWig (plus strand signal of all reads) 77.8 MB
ENCFF285YDY.bam bam (alignments) 3.5 GB
ENCFF301HOF.bigWig bigWig (minus strand signal of unique reads) 74.3 MB
ENCFF315KDO.bigWig bigWig (minus strand signal of all reads) 76.4 MB
ENCFF320VDB.bigWig bigWig (minus strand signal of unique reads) 86.5 MB
ENCFF322GQJ.tsv tsv (transcript quantifications) 27.4 MB
ENCFF329FAG.bigWig bigWig (plus strand signal of all reads) 75.5 MB
ENCFF330NPH.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF352GZE.bigWig bigWig (plus strand signal of unique reads) 88.5 MB
ENCFF361MIN.tsv tsv (gene quantifications) 9.1 MB
ENCFF381ERZ.bigWig bigWig (minus strand signal of unique reads) 83.2 MB
ENCFF408KZK.tsv tsv (transcript quantifications) 25.3 MB
ENCFF435IUT.bigWig bigWig (plus strand signal of unique reads) 85.6 MB
ENCFF468PTS.tsv tsv (transcript quantifications) 29.8 MB
ENCFF477CPF.bigWig bigWig (minus strand signal of all reads) 82.8 MB
ENCFF514BIO.bigWig bigWig (minus strand signal of all reads) 90.6 MB
ENCFF520NCA.bigWig bigWig (plus strand signal of all reads) 88.9 MB
ENCFF521BLN.bigWig bigWig (minus strand signal of unique reads) 86.5 MB
ENCFF528LYC.fastq fastq (reads) 3.2 GB
ENCFF537PAZ.bigWig bigWig (plus strand signal of unique reads) 89.7 MB
ENCFF559OVZ.tsv tsv (gene quantifications) 9.5 MB
ENCFF597WLM.bigWig bigWig (minus strand signal of all reads) 89.1 MB
ENCFF605NPW.bam bam (alignments) 5.7 GB
ENCFF607OCZ.bam bam (transcriptome alignments) 6.5 GB
ENCFF609ULI.bigWig bigWig (minus strand signal of all reads) 98.2 MB
ENCFF613QXE.bam bam (alignments) 4.7 GB
ENCFF627ECK.tar tar (differential splicing quantifications) 3.9 MB
ENCFF651NLO.bigWig bigWig (plus strand signal of all reads) 84.0 MB
ENCFF674TKZ.tsv tsv (gene quantifications) 9.5 MB
ENCFF687NCH.tsv tsv (differential expression quantifications) 3.0 MB
ENCFF718DSO.bam bam (alignments) 5.5 GB
ENCFF727OJT.tsv tsv (transcript quantifications) 25.3 MB
ENCFF735PRV.bigWig bigWig (minus strand signal of unique reads) 87.5 MB
ENCFF736JBV.bigWig bigWig (plus strand signal of unique reads) 71.0 MB
ENCFF762NBR.bam bam (alignments) 4.2 GB
ENCFF773XYJ.bigWig bigWig (minus strand signal of unique reads) 73.3 MB
ENCFF786WII.bigWig bigWig (plus strand signal of unique reads) 85.0 MB
ENCFF790LZW.bigWig bigWig (plus strand signal of all reads) 98.5 MB
ENCFF801HBS.bigWig bigWig (plus strand signal of all reads) 99.4 MB
ENCFF803WBE.bigWig bigWig (plus strand signal of all reads) 84.1 MB
ENCFF808YZZ.bigWig bigWig (minus strand signal of all reads) 72.6 MB
ENCFF829AQB.bigWig bigWig (plus strand signal of all reads) 90.2 MB
ENCFF831CTB.bigWig bigWig (plus strand signal of unique reads) 71.6 MB
ENCFF840CBJ.bam bam (alignments) 3.6 GB
ENCFF881PMO.bam bam (alignments) 4.5 GB
ENCFF892CID.tar tar (differential splicing quantifications) 3.3 MB
ENCFF896ILB.bigWig bigWig (minus strand signal of all reads) 97.2 MB
ENCFF900YLN.tar tar (differential splicing quantifications) 16.4 MB
ENCFF909KMC.bigWig bigWig (plus strand signal of unique reads) 88.6 MB
ENCFF919KTT.fastq fastq (reads) 3.3 GB
ENCFF921VSN.bigWig bigWig (minus strand signal of all reads) 74.5 MB
ENCFF930QYJ.fastq fastq (reads) 2.5 GB
ENCFF931MPP.bigWig bigWig (plus strand signal of unique reads) 75.1 MB
ENCFF948ZNH.bigWig bigWig (plus strand signal of unique reads) 68.6 MB
ENCFF960EZT.tsv tsv (differential expression quantifications) 4.3 MB
ENCFF963TEG.bigWig bigWig (plus strand signal of all reads) 73.9 MB
ENCFF968NXH.bam bam (alignments) 4.4 GB
ENCFF980MXK.bigWig bigWig (minus strand signal of unique reads) 83.6 MB
ENCFF985QNQ.bam bam (alignments) 5.7 GB
ENCFF986ZIU.tsv tsv (transcript quantifications) 29.8 MB
ENCFF987YDM.bigWig bigWig (minus strand signal of all reads) 87.3 MB
ENCFF992UNG.bigWig bigWig (minus strand signal of unique reads) 79.6 MB
ENCSR555LCE ENCSR · via encode_api

RNA-seq on K562 cells treated with an shRNA knockdown against FMR1. (FMR1_BGKLV36)

Homo sapiens

92 data files
FileTypeSize
ENCFF002WNM.bigWig bigWig (minus strand signal of all reads) 88.1 MB
ENCFF006DLQ.tsv tsv (transcript quantifications) 29.9 MB
ENCFF008OMX.bam bam (alignments) 5.0 GB
ENCFF011AXM.bigWig bigWig (minus strand signal of unique reads) 89.0 MB
ENCFF017OAE.bam bam (transcriptome alignments) 5.9 GB
ENCFF062LRK.tar tar (differential splicing quantifications) 3.7 MB
ENCFF078PWQ.bigWig bigWig (minus strand signal of all reads) 77.5 MB
ENCFF100ADH.bigWig bigWig (minus strand signal of all reads) 101.6 MB
ENCFF111TVJ.bam bam (transcriptome alignments) 6.5 GB
ENCFF118FKF.bigWig bigWig (minus strand signal of unique reads) 83.2 MB
ENCFF120YNR.bam bam (alignments) 5.3 GB
ENCFF126GRG.bam bam (transcriptome alignments) 7.5 GB
ENCFF130FTD.bigWig bigWig (plus strand signal of all reads) 88.9 MB
ENCFF134MXG.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF144TKO.tsv tsv (transcript quantifications) 29.9 MB
ENCFF163TDV.bigWig bigWig (plus strand signal of unique reads) 91.1 MB
ENCFF168THF.bigWig bigWig (plus strand signal of unique reads) 73.0 MB
ENCFF171QNO.tsv tsv (gene quantifications) 10.4 MB
ENCFF179IPO.tsv tsv (gene quantifications) 9.5 MB
ENCFF189MCV.bigWig bigWig (minus strand signal of all reads) 87.7 MB
ENCFF198IHE.bam bam (transcriptome alignments) 6.5 GB
ENCFF199PVY.fastq fastq (reads) 3.0 GB
ENCFF214GGH.bigWig bigWig (minus strand signal of unique reads) 77.9 MB
ENCFF227DJG.bigWig bigWig (plus strand signal of all reads) 76.1 MB
ENCFF238CQU.tsv tsv (transcript quantifications) 25.0 MB
ENCFF242GFU.tsv tsv (gene quantifications) 9.1 MB
ENCFF244MBT.bigWig bigWig (plus strand signal of unique reads) 91.0 MB
ENCFF263LSS.tsv tsv (differential expression quantifications) 4.4 MB
ENCFF272CPM.bigWig bigWig (plus strand signal of unique reads) 74.2 MB
ENCFF275UHP.tsv tsv (gene quantifications) 9.5 MB
ENCFF280WLM.tsv tsv (transcript quantifications) 25.4 MB
ENCFF287FWQ.bigWig bigWig (plus strand signal of unique reads) 79.6 MB
ENCFF289HFR.bam bam (alignments) 5.4 GB
ENCFF291LOG.bigWig bigWig (plus strand signal of unique reads) 91.0 MB
ENCFF294NLX.bigWig bigWig (minus strand signal of all reads) 74.5 MB
ENCFF306WLR.tsv tsv (gene quantifications) 10.4 MB
ENCFF308RUP.bigWig bigWig (plus strand signal of unique reads) 80.0 MB
ENCFF312JIT.bam bam (transcriptome alignments) 5.9 GB
ENCFF324ZUP.bam bam (alignments) 4.1 GB
ENCFF360AVE.tsv tsv (transcript quantifications) 27.3 MB
ENCFF365LGK.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF365TMN.bam bam (alignments) 4.9 GB
ENCFF379OBE.bigWig bigWig (minus strand signal of all reads) 101.6 MB
ENCFF379WTO.tsv tsv (transcript quantifications) 25.0 MB
ENCFF396LHP.bigWig bigWig (plus strand signal of all reads) 86.9 MB
ENCFF402VSM.bigWig bigWig (plus strand signal of all reads) 92.8 MB
ENCFF430WVF.bigWig bigWig (plus strand signal of all reads) 89.2 MB
ENCFF440RBD.bigWig bigWig (minus strand signal of unique reads) 77.6 MB
ENCFF446LLD.tar tar (differential splicing quantifications) 4.3 MB
ENCFF466MEG.bam bam (alignments) 4.1 GB
ENCFF471SAH.bigWig bigWig (plus strand signal of unique reads) 69.8 MB
ENCFF486GYU.bigWig bigWig (minus strand signal of unique reads) 67.8 MB
ENCFF529CZF.bam bam (alignments) 4.3 GB
ENCFF531EIV.bigWig bigWig (plus strand signal of all reads) 81.1 MB
ENCFF551WYQ.tsv tsv (differential expression quantifications) 5.5 MB
ENCFF564CWJ.bigWig bigWig (minus strand signal of all reads) 88.4 MB
ENCFF580AMN.bigWig bigWig (plus strand signal of unique reads) 79.5 MB
ENCFF580YUW.bigWig bigWig (plus strand signal of unique reads) 79.1 MB
ENCFF587ASE.tar tar (differential splicing quantifications) 13.8 MB
ENCFF589DNB.bam bam (alignments) 4.3 GB
ENCFF591AGR.fastq fastq (reads) 3.2 GB
ENCFF607LVY.bigWig bigWig (plus strand signal of all reads) 78.5 MB
ENCFF618IYS.bigWig bigWig (minus strand signal of unique reads) 77.4 MB
ENCFF666ASK.bigWig bigWig (plus strand signal of unique reads) 85.3 MB
ENCFF680ZJA.tsv tsv (differential expression quantifications) 2.0 MB
ENCFF689GFY.bam bam (alignments) 4.1 GB
ENCFF710UIN.tsv tsv (transcript quantifications) 27.4 MB
ENCFF719NWY.bigWig bigWig (plus strand signal of all reads) 101.5 MB
ENCFF726JPR.bigWig bigWig (minus strand signal of all reads) 100.1 MB
ENCFF736SKR.bigWig bigWig (minus strand signal of all reads) 85.2 MB
ENCFF752LTP.bigWig bigWig (minus strand signal of all reads) 91.1 MB
ENCFF756YYV.tsv tsv (gene quantifications) 9.1 MB
ENCFF761WUC.bigWig bigWig (minus strand signal of unique reads) 72.4 MB
ENCFF763KBU.bam bam (alignments) 5.0 GB
ENCFF776RDX.bigWig bigWig (minus strand signal of all reads) 79.7 MB
ENCFF795WDP.bigWig bigWig (plus strand signal of all reads) 89.2 MB
ENCFF814JXU.bigWig bigWig (minus strand signal of unique reads) 77.9 MB
ENCFF827TCG.bigWig bigWig (plus strand signal of all reads) 89.6 MB
ENCFF829HTA.bigWig bigWig (minus strand signal of unique reads) 71.5 MB
ENCFF829IGW.bam bam (transcriptome alignments) 6.8 GB
ENCFF834ZMG.bigWig bigWig (minus strand signal of all reads) 88.2 MB
ENCFF854WET.fastq fastq (reads) 3.1 GB
ENCFF860GQW.bigWig bigWig (plus strand signal of all reads) 102.9 MB
ENCFF878CVQ.fastq fastq (reads) 2.9 GB
ENCFF881YLR.bigWig bigWig (minus strand signal of unique reads) 88.8 MB
ENCFF885AJF.bigWig bigWig (minus strand signal of unique reads) 89.1 MB
ENCFF921HKC.bigWig bigWig (plus strand signal of unique reads) 83.9 MB
ENCFF932TXF.bigWig bigWig (plus strand signal of all reads) 103.0 MB
ENCFF950XSE.bam bam (alignments) 4.3 GB
ENCFF956IYM.bigWig bigWig (minus strand signal of unique reads) 82.1 MB
ENCFF963JVX.bam bam (alignments) 5.4 GB
ENCFF984JLB.tsv tsv (transcript quantifications) 25.4 MB
ENCSR754RJA ENCSR · via encode_api

RNA-seq on K562 cells treated with an shRNA knockdown against NUFIP2. (NUFIP2_BGKLV34)

Homo sapiens

92 data files
FileTypeSize
ENCFF025VYH.fastq fastq (reads) 2.9 GB
ENCFF070TAA.bigWig bigWig (minus strand signal of all reads) 87.9 MB
ENCFF075HAQ.tsv tsv (transcript quantifications) 24.9 MB
ENCFF077COC.bigWig bigWig (minus strand signal of unique reads) 75.9 MB
ENCFF116DHK.bam bam (alignments) 4.4 GB
ENCFF116ZWC.tsv tsv (differential expression quantifications) 2.0 MB
ENCFF121ZHE.bigWig bigWig (plus strand signal of unique reads) 81.1 MB
ENCFF124NOW.tsv tsv (differential expression quantifications) 1.8 MB
ENCFF135OTB.tsv tsv (gene quantifications) 10.4 MB
ENCFF136JVZ.bigWig bigWig (minus strand signal of unique reads) 85.3 MB
ENCFF158GAZ.bigWig bigWig (plus strand signal of all reads) 96.2 MB
ENCFF177RPJ.bigWig bigWig (minus strand signal of unique reads) 90.3 MB
ENCFF179SVZ.bigWig bigWig (minus strand signal of unique reads) 84.2 MB
ENCFF199DGS.bigWig bigWig (minus strand signal of unique reads) 81.2 MB
ENCFF209BIZ.bam bam (alignments) 5.1 GB
ENCFF219GYK.bam bam (transcriptome alignments) 5.8 GB
ENCFF231GQI.bam bam (transcriptome alignments) 6.6 GB
ENCFF237IKS.tsv tsv (transcript quantifications) 27.4 MB
ENCFF246DKM.tsv tsv (transcript quantifications) 27.4 MB
ENCFF254CEF.tar tar (differential splicing quantifications) 16.5 MB
ENCFF283GTU.tsv tsv (transcript quantifications) 25.3 MB
ENCFF288ZMT.bigWig bigWig (plus strand signal of unique reads) 91.5 MB
ENCFF295ZKA.bigWig bigWig (minus strand signal of all reads) 102.4 MB
ENCFF301CLR.bam bam (alignments) 5.4 GB
ENCFF311RPE.fastq fastq (reads) 3.0 GB
ENCFF331FCS.bigWig bigWig (minus strand signal of all reads) 83.4 MB
ENCFF337FIF.tsv tsv (differential expression quantifications) 2.4 MB
ENCFF358MSF.bigWig bigWig (plus strand signal of all reads) 98.1 MB
ENCFF375VGB.bam bam (alignments) 4.2 GB
ENCFF403GKL.bam bam (alignments) 4.1 GB
ENCFF477KCE.bam bam (alignments) 5.6 GB
ENCFF494CQB.bigWig bigWig (plus strand signal of all reads) 84.9 MB
ENCFF501ZDV.bigWig bigWig (minus strand signal of all reads) 95.1 MB
ENCFF513MYF.bigWig bigWig (minus strand signal of all reads) 97.1 MB
ENCFF519JFB.bigWig bigWig (plus strand signal of unique reads) 87.4 MB
ENCFF536LML.bam bam (alignments) 5.1 GB
ENCFF541AGD.bigWig bigWig (plus strand signal of all reads) 89.5 MB
ENCFF544AGP.tsv tsv (gene quantifications) 9.1 MB
ENCFF545UKS.fastq fastq (reads) 2.8 GB
ENCFF563OIH.bigWig bigWig (minus strand signal of unique reads) 85.6 MB
ENCFF574RUY.bigWig bigWig (plus strand signal of all reads) 98.1 MB
ENCFF574YFY.bigWig bigWig (plus strand signal of unique reads) 78.1 MB
ENCFF578IGY.bigWig bigWig (plus strand signal of unique reads) 86.4 MB
ENCFF582EDP.tar tar (differential splicing quantifications) 4.6 MB
ENCFF595NMP.bam bam (alignments) 4.5 GB
ENCFF597VKF.bigWig bigWig (minus strand signal of unique reads) 90.3 MB
ENCFF600GPX.bigWig bigWig (plus strand signal of all reads) 103.6 MB
ENCFF600IZH.bam bam (transcriptome alignments) 5.9 GB
ENCFF603XAD.bam bam (alignments) 4.9 GB
ENCFF604BTN.bigWig bigWig (plus strand signal of unique reads) 81.2 MB
ENCFF606MIH.tsv tsv (transcript quantifications) 29.8 MB
ENCFF612HMQ.tsv tsv (gene quantifications) 9.5 MB
ENCFF613YHT.tsv tsv (transcript quantifications) 24.9 MB
ENCFF621MUJ.bam bam (transcriptome alignments) 6.4 GB
ENCFF632CWT.tsv tsv (gene quantifications) 9.5 MB
ENCFF637ETA.bam bam (transcriptome alignments) 6.4 GB
ENCFF647IPB.bigWig bigWig (minus strand signal of all reads) 84.8 MB
ENCFF648UVH.bigWig bigWig (plus strand signal of all reads) 87.9 MB
ENCFF650AKJ.bigWig bigWig (plus strand signal of unique reads) 86.5 MB
ENCFF658FQD.bigWig bigWig (minus strand signal of all reads) 91.3 MB
ENCFF668XKU.bigWig bigWig (plus strand signal of unique reads) 92.3 MB
ENCFF670HSQ.bigWig bigWig (minus strand signal of all reads) 100.8 MB
ENCFF673MJM.tar tar (differential splicing quantifications) 3.8 MB
ENCFF692MEZ.bigWig bigWig (plus strand signal of unique reads) 85.1 MB
ENCFF703THM.bigWig bigWig (plus strand signal of all reads) 103.6 MB
ENCFF718XPP.bigWig bigWig (plus strand signal of all reads) 90.6 MB
ENCFF730SPO.tsv tsv (transcript quantifications) 29.8 MB
ENCFF736VQQ.bam bam (alignments) 4.1 GB
ENCFF740GJW.tsv tsv (gene quantifications) 10.4 MB
ENCFF765DSX.tsv tsv (differential expression quantifications) 4.2 MB
ENCFF769MRT.bigWig bigWig (plus strand signal of all reads) 92.9 MB
ENCFF775QIW.bigWig bigWig (minus strand signal of unique reads) 89.2 MB
ENCFF778YMX.bigWig bigWig (minus strand signal of all reads) 97.1 MB
ENCFF780FYA.bigWig bigWig (minus strand signal of all reads) 86.5 MB
ENCFF790WBR.bigWig bigWig (minus strand signal of all reads) 102.5 MB
ENCFF831UAJ.bigWig bigWig (minus strand signal of unique reads) 79.4 MB
ENCFF840QOG.bigWig bigWig (plus strand signal of unique reads) 87.5 MB
ENCFF855GAA.bigWig bigWig (minus strand signal of all reads) 89.5 MB
ENCFF857OON.bigWig bigWig (plus strand signal of unique reads) 83.5 MB
ENCFF863JJI.fastq fastq (reads) 2.7 GB
ENCFF906DJB.tsv tsv (gene quantifications) 9.1 MB
ENCFF913XJC.bam bam (alignments) 5.6 GB
ENCFF914AXK.bigWig bigWig (minus strand signal of unique reads) 84.7 MB
ENCFF924PFL.tsv tsv (transcript quantifications) 25.3 MB
ENCFF933GNQ.bigWig bigWig (plus strand signal of all reads) 85.8 MB
ENCFF934OQM.bigWig bigWig (plus strand signal of all reads) 102.0 MB
ENCFF949TLK.tsv tsv (differential expression quantifications) 5.5 MB
ENCFF963NGH.bam bam (transcriptome alignments) 7.3 GB
ENCFF973OXV.bigWig bigWig (minus strand signal of unique reads) 83.4 MB
ENCFF989GOF.bam bam (alignments) 4.4 GB
ENCFF994IBE.bigWig bigWig (minus strand signal of unique reads) 79.3 MB
ENCFF998LKQ.bigWig bigWig (plus strand signal of unique reads) 92.4 MB
ENCSR598YQX ENCSR · via encode_api

RNA-seq on K562 cells treated with an shRNA knockdown against LIN28B. (LIN28B_BGKLV21)

Homo sapiens

90 data files
FileTypeSize
ENCFF006QWO.bigWig bigWig (plus strand signal of unique reads) 83.3 MB
ENCFF011SYE.bam bam (alignments) 1.6 GB
ENCFF033QVJ.bam bam (transcriptome alignments) 5.8 GB
ENCFF046JGX.tsv tsv (gene quantifications) 9.4 MB
ENCFF054IVS.bigWig bigWig (plus strand signal of all reads) 68.7 MB
ENCFF058AKQ.bam bam (transcriptome alignments) 5.0 GB
ENCFF072KAU.bam bam (alignments) 3.9 GB
ENCFF073PRF.tsv tsv (differential expression quantifications) 1.8 MB
ENCFF078JYQ.bam bam (transcriptome alignments) 6.5 GB
ENCFF084LJR.bigWig bigWig (plus strand signal of all reads) 94.3 MB
ENCFF095HWW.bigWig bigWig (plus strand signal of all reads) 94.3 MB
ENCFF106WRO.bigWig bigWig (plus strand signal of all reads) 86.4 MB
ENCFF108IXI.bigWig bigWig (plus strand signal of unique reads) 69.9 MB
ENCFF110KZL.bigWig bigWig (minus strand signal of unique reads) 64.1 MB
ENCFF112JUM.bigWig bigWig (minus strand signal of unique reads) 81.4 MB
ENCFF115GMC.fastq fastq (reads) 1.6 GB
ENCFF118TGN.tsv tsv (differential expression quantifications) 2.8 MB
ENCFF127EKV.bigWig bigWig (minus strand signal of unique reads) 60.2 MB
ENCFF133ZUN.bigWig bigWig (plus strand signal of all reads) 41.6 MB
ENCFF146ANC.bigWig bigWig (minus strand signal of all reads) 92.9 MB
ENCFF147ADP.bigWig bigWig (minus strand signal of all reads) 82.8 MB
ENCFF162XOO.tsv tsv (gene quantifications) 9.5 MB
ENCFF169CCV.tsv tsv (transcript quantifications) 29.8 MB
ENCFF171QBD.bigWig bigWig (plus strand signal of all reads) 93.2 MB
ENCFF175XSX.bigWig bigWig (minus strand signal of unique reads) 36.9 MB
ENCFF195AFX.bigWig bigWig (plus strand signal of all reads) 66.7 MB
ENCFF209DIG.bigWig bigWig (minus strand signal of unique reads) 81.2 MB
ENCFF227SAA.tsv tsv (transcript quantifications) 24.9 MB
ENCFF232HIK.tsv tsv (gene quantifications) 9.1 MB
ENCFF246SHJ.tsv tsv (differential expression quantifications) 4.2 MB
ENCFF279NDM.tsv tsv (transcript quantifications) 27.3 MB
ENCFF291SXX.bigWig bigWig (plus strand signal of unique reads) 69.9 MB
ENCFF296AYT.tsv tsv (transcript quantifications) 27.2 MB
ENCFF319SJK.tsv tsv (gene quantifications) 10.4 MB
ENCFF322AFY.bigWig bigWig (minus strand signal of unique reads) 66.9 MB
ENCFF340URV.tar tar (differential splicing quantifications) 14.8 MB
ENCFF352WCF.bigWig bigWig (plus strand signal of unique reads) 62.0 MB
ENCFF374BDP.bigWig bigWig (plus strand signal of all reads) 77.5 MB
ENCFF378LIZ.tsv tsv (transcript quantifications) 25.3 MB
ENCFF385ZPU.bam bam (alignments) 3.8 GB
ENCFF391YLM.fastq fastq (reads) 983.6 MB
ENCFF397HYY.bam bam (alignments) 3.9 GB
ENCFF415BFX.bigWig bigWig (minus strand signal of all reads) 91.7 MB
ENCFF425BPJ.fastq fastq (reads) 1.0 GB
ENCFF441JGW.bigWig bigWig (minus strand signal of all reads) 67.7 MB
ENCFF472NIN.tsv tsv (gene quantifications) 9.1 MB
ENCFF503VRQ.tsv tsv (transcript quantifications) 24.9 MB
ENCFF505JCB.bam bam (alignments) 4.6 GB
ENCFF518KAH.bigWig bigWig (plus strand signal of unique reads) 65.7 MB
ENCFF526CXQ.bam bam (transcriptome alignments) 4.4 GB
ENCFF535HCI.bam bam (transcriptome alignments) 5.7 GB
ENCFF565EFY.bigWig bigWig (minus strand signal of unique reads) 81.4 MB
ENCFF579TGW.bam bam (alignments) 3.3 GB
ENCFF584NUV.bigWig bigWig (plus strand signal of unique reads) 68.9 MB
ENCFF587EYA.bigWig bigWig (minus strand signal of all reads) 76.3 MB
ENCFF587YDY.tar tar (differential splicing quantifications) 3.9 MB
ENCFF593OPB.bigWig bigWig (minus strand signal of unique reads) 68.0 MB
ENCFF598MZL.bam bam (alignments) 4.7 GB
ENCFF621LMO.fastq fastq (reads) 2.0 GB
ENCFF623UWZ.bam bam (alignments) 4.7 GB
ENCFF631RVB.bigWig bigWig (plus strand signal of all reads) 77.3 MB
ENCFF633UGG.tsv tsv (transcript quantifications) 25.3 MB
ENCFF644PBD.bam bam (alignments) 3.2 GB
ENCFF652UXV.tar tar (differential splicing quantifications) 3.3 MB
ENCFF653FTD.fastq fastq (reads) 2.1 GB
ENCFF655PJZ.bam bam (alignments) 3.2 GB
ENCFF679IWW.bigWig bigWig (plus strand signal of unique reads) 80.3 MB
ENCFF687ERF.bigWig bigWig (plus strand signal of unique reads) 79.0 MB
ENCFF705KDJ.bigWig bigWig (plus strand signal of unique reads) 83.6 MB
ENCFF723XHO.bigWig bigWig (minus strand signal of all reads) 65.3 MB
ENCFF732UOT.bigWig bigWig (minus strand signal of unique reads) 78.0 MB
ENCFF740NJV.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF754OXZ.tsv tsv (transcript quantifications) 29.8 MB
ENCFF762NXX.bigWig bigWig (plus strand signal of all reads) 84.0 MB
ENCFF785ZZQ.bigWig bigWig (minus strand signal of all reads) 40.6 MB
ENCFF794GHQ.bigWig bigWig (plus strand signal of unique reads) 38.0 MB
ENCFF850YAF.bigWig bigWig (minus strand signal of all reads) 76.4 MB
ENCFF867DZB.bam bam (alignments) 3.9 GB
ENCFF872WEG.tsv tsv (gene quantifications) 10.4 MB
ENCFF877OZJ.bigWig bigWig (plus strand signal of unique reads) 83.7 MB
ENCFF878LHH.bigWig bigWig (minus strand signal of unique reads) 68.0 MB
ENCFF915RHA.bigWig bigWig (minus strand signal of all reads) 76.1 MB
ENCFF922AOZ.fastq fastq (reads) 1.6 GB
ENCFF922RAH.bigWig bigWig (minus strand signal of unique reads) 77.1 MB
ENCFF953FUO.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF955TVE.bam bam (transcriptome alignments) 4.5 GB
ENCFF956PKP.bigWig bigWig (minus strand signal of all reads) 92.9 MB
ENCFF971JUL.bam bam (alignments) 3.9 GB
ENCFF988IKM.bigWig bigWig (minus strand signal of all reads) 84.7 MB
ENCFF990ZDQ.bigWig bigWig (plus strand signal of all reads) 77.4 MB
ENCSR343DHN ENCSR · via encode_api

RNA-seq on HepG2 cells treated with an shRNA knockdown against SBDS. (SBDS-BGHLV22)

Homo sapiens

92 data files
FileTypeSize
ENCFF012ESM.tsv tsv (gene quantifications) 10.4 MB
ENCFF033DPW.bigWig bigWig (plus strand signal of all reads) 77.5 MB
ENCFF059WKW.tsv tsv (differential expression quantifications) 5.5 MB
ENCFF065JJK.tsv tsv (differential expression quantifications) 2.8 MB
ENCFF066SBQ.bam bam (transcriptome alignments) 6.2 GB
ENCFF066TPV.bigWig bigWig (plus strand signal of unique reads) 73.9 MB
ENCFF067DPS.bigWig bigWig (minus strand signal of unique reads) 77.1 MB
ENCFF068EQH.fastq fastq (reads) 2.7 GB
ENCFF083EBZ.bigWig bigWig (minus strand signal of all reads) 71.3 MB
ENCFF088TIJ.bigWig bigWig (plus strand signal of all reads) 77.0 MB
ENCFF097IVE.fastq fastq (reads) 2.7 GB
ENCFF097UMS.bigWig bigWig (minus strand signal of unique reads) 72.4 MB
ENCFF099JCF.bigWig bigWig (plus strand signal of unique reads) 77.8 MB
ENCFF106VIX.bigWig bigWig (plus strand signal of all reads) 81.8 MB
ENCFF127JHE.bigWig bigWig (plus strand signal of unique reads) 73.9 MB
ENCFF152QEE.bigWig bigWig (minus strand signal of unique reads) 72.0 MB
ENCFF164JAF.bam bam (transcriptome alignments) 6.3 GB
ENCFF169EGZ.tsv tsv (transcript quantifications) 25.3 MB
ENCFF181UEP.bigWig bigWig (plus strand signal of all reads) 86.2 MB
ENCFF182YUK.bam bam (alignments) 5.2 GB
ENCFF193JSS.bigWig bigWig (plus strand signal of all reads) 72.0 MB
ENCFF194BFM.bigWig bigWig (plus strand signal of all reads) 81.9 MB
ENCFF202WRE.tar tar (differential splicing quantifications) 3.1 MB
ENCFF204HHO.tsv tsv (transcript quantifications) 27.3 MB
ENCFF219JNZ.bigWig bigWig (minus strand signal of all reads) 86.2 MB
ENCFF220RGD.bam bam (alignments) 4.3 GB
ENCFF232ZTZ.bigWig bigWig (plus strand signal of all reads) 80.2 MB
ENCFF283ZTU.tsv tsv (differential expression quantifications) 1.8 MB
ENCFF290TQU.bam bam (alignments) 4.4 GB
ENCFF292JZR.bam bam (transcriptome alignments) 6.2 GB
ENCFF338ZSF.bigWig bigWig (minus strand signal of all reads) 80.9 MB
ENCFF341JUY.bigWig bigWig (plus strand signal of unique reads) 78.1 MB
ENCFF358LIL.bigWig bigWig (minus strand signal of all reads) 70.8 MB
ENCFF374QFL.bigWig bigWig (plus strand signal of unique reads) 73.4 MB
ENCFF375ESZ.tsv tsv (transcript quantifications) 29.8 MB
ENCFF375YFU.bigWig bigWig (plus strand signal of unique reads) 74.5 MB
ENCFF381ZBS.tsv tsv (transcript quantifications) 24.9 MB
ENCFF400JBZ.bigWig bigWig (minus strand signal of unique reads) 76.4 MB
ENCFF400VDZ.bam bam (alignments) 5.2 GB
ENCFF425XOR.bigWig bigWig (minus strand signal of all reads) 76.7 MB
ENCFF431OYL.bigWig bigWig (plus strand signal of unique reads) 69.3 MB
ENCFF433WPM.bam bam (alignments) 4.4 GB
ENCFF441SXG.tsv tsv (transcript quantifications) 25.3 MB
ENCFF465VCD.bigWig bigWig (minus strand signal of all reads) 75.9 MB
ENCFF469JET.bigWig bigWig (minus strand signal of unique reads) 76.6 MB
ENCFF471HRB.bigWig bigWig (minus strand signal of unique reads) 73.0 MB
ENCFF476QBC.tsv tsv (differential expression quantifications) 4.2 MB
ENCFF480CNB.tsv tsv (gene quantifications) 9.4 MB
ENCFF488ZBV.bam bam (alignments) 4.3 GB
ENCFF489JSO.tsv tsv (transcript quantifications) 27.3 MB
ENCFF490UBQ.bigWig bigWig (minus strand signal of unique reads) 65.6 MB
ENCFF519LDI.bigWig bigWig (plus strand signal of unique reads) 67.3 MB
ENCFF538HTJ.bigWig bigWig (minus strand signal of unique reads) 69.8 MB
ENCFF550BGG.bam bam (alignments) 4.4 GB
ENCFF558TCD.bigWig bigWig (minus strand signal of all reads) 80.9 MB
ENCFF564BXF.fastq fastq (reads) 2.8 GB
ENCFF584XCH.tar tar (differential splicing quantifications) 3.7 MB
ENCFF642WPV.bam bam (alignments) 5.0 GB
ENCFF646LBK.fastq fastq (reads) 2.7 GB
ENCFF659OYC.bigWig bigWig (plus strand signal of all reads) 72.1 MB
ENCFF673KBQ.tsv tsv (transcript quantifications) 24.9 MB
ENCFF676MAZ.tsv tsv (gene quantifications) 9.4 MB
ENCFF699SRJ.bigWig bigWig (minus strand signal of all reads) 79.4 MB
ENCFF699UIZ.bigWig bigWig (plus strand signal of all reads) 87.2 MB
ENCFF702WOI.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF710CSZ.bigWig bigWig (minus strand signal of unique reads) 72.4 MB
ENCFF710DTV.bigWig bigWig (plus strand signal of all reads) 87.2 MB
ENCFF712BJB.tsv tsv (gene quantifications) 10.4 MB
ENCFF718MPA.bigWig bigWig (minus strand signal of unique reads) 68.3 MB
ENCFF723GPU.bam bam (alignments) 4.4 GB
ENCFF727KUX.tsv tsv (gene quantifications) 9.1 MB
ENCFF734XGH.bigWig bigWig (plus strand signal of unique reads) 71.4 MB
ENCFF744BDN.tsv tsv (gene quantifications) 9.1 MB
ENCFF748XLB.bam bam (transcriptome alignments) 6.2 GB
ENCFF752VKT.bigWig bigWig (plus strand signal of unique reads) 69.8 MB
ENCFF784ZAK.bigWig bigWig (plus strand signal of unique reads) 73.9 MB
ENCFF789MQP.bigWig bigWig (minus strand signal of all reads) 85.4 MB
ENCFF801BRP.bam bam (alignments) 5.0 GB
ENCFF803XVD.tar tar (differential splicing quantifications) 15.6 MB
ENCFF815QPK.bigWig bigWig (plus strand signal of unique reads) 78.6 MB
ENCFF818QWH.bam bam (transcriptome alignments) 7.0 GB
ENCFF829SXA.bam bam (alignments) 5.2 GB
ENCFF844BXB.bigWig bigWig (plus strand signal of all reads) 79.7 MB
ENCFF892MED.bam bam (alignments) 5.2 GB
ENCFF893WIF.bigWig bigWig (minus strand signal of all reads) 86.2 MB
ENCFF894WXV.bigWig bigWig (minus strand signal of all reads) 78.6 MB
ENCFF899HUN.bigWig bigWig (plus strand signal of all reads) 74.5 MB
ENCFF903RHD.bigWig bigWig (minus strand signal of unique reads) 72.6 MB
ENCFF910ZSR.tsv tsv (transcript quantifications) 29.8 MB
ENCFF927ODY.bigWig bigWig (minus strand signal of all reads) 73.5 MB
ENCFF944GVH.bigWig bigWig (minus strand signal of unique reads) 68.0 MB
ENCFF951JQK.bam bam (transcriptome alignments) 6.9 GB
ENCSR222COT ENCSR · via encode_api

RNA-seq on K562 cells treated with an shRNA knockdown against MBNL1. (MBNL1_BGKLV32)

Homo sapiens

92 data files
FileTypeSize
ENCFF011DNO.bam bam (alignments) 6.7 GB
ENCFF017OVU.bam bam (transcriptome alignments) 13.7 GB
ENCFF028ELQ.bigWig bigWig (plus strand signal of unique reads) 89.7 MB
ENCFF045QZP.bigWig bigWig (minus strand signal of unique reads) 124.0 MB
ENCFF078TRZ.bigWig bigWig (minus strand signal of unique reads) 112.7 MB
ENCFF092KFK.bigWig bigWig (minus strand signal of all reads) 139.2 MB
ENCFF101VXS.bigWig bigWig (plus strand signal of unique reads) 127.3 MB
ENCFF130HZO.bigWig bigWig (plus strand signal of unique reads) 88.7 MB
ENCFF138GEX.bigWig bigWig (plus strand signal of all reads) 93.9 MB
ENCFF157RRO.bigWig bigWig (plus strand signal of all reads) 124.8 MB
ENCFF169YQH.bigWig bigWig (plus strand signal of unique reads) 126.6 MB
ENCFF178PBW.bigWig bigWig (plus strand signal of all reads) 128.1 MB
ENCFF220QNW.bam bam (alignments) 5.6 GB
ENCFF225ILH.tsv tsv (gene quantifications) 9.1 MB
ENCFF260XQD.bigWig bigWig (minus strand signal of all reads) 95.1 MB
ENCFF267FIW.bam bam (alignments) 10.4 GB
ENCFF285LCQ.bigWig bigWig (minus strand signal of unique reads) 115.2 MB
ENCFF291UVR.bigWig bigWig (plus strand signal of all reads) 141.5 MB
ENCFF300URD.bam bam (alignments) 10.7 GB
ENCFF304ARY.bigWig bigWig (minus strand signal of unique reads) 122.4 MB
ENCFF321DIB.bigWig bigWig (minus strand signal of unique reads) 114.3 MB
ENCFF323HHA.bam bam (alignments) 8.6 GB
ENCFF323PYV.bigWig bigWig (plus strand signal of unique reads) 86.7 MB
ENCFF329JQN.bigWig bigWig (minus strand signal of all reads) 122.6 MB
ENCFF336DMP.tar tar (differential splicing quantifications) 4.5 MB
ENCFF340OIL.tsv tsv (transcript quantifications) 24.9 MB
ENCFF343LZK.tsv tsv (transcript quantifications) 27.5 MB
ENCFF343OVI.bam bam (alignments) 8.6 GB
ENCFF346YYV.tsv tsv (gene quantifications) 9.1 MB
ENCFF375JJO.bam bam (transcriptome alignments) 7.8 GB
ENCFF376KVP.tsv tsv (gene quantifications) 10.4 MB
ENCFF389NBL.bigWig bigWig (minus strand signal of unique reads) 86.5 MB
ENCFF402WCC.bigWig bigWig (plus strand signal of unique reads) 118.6 MB
ENCFF403FEH.bam bam (alignments) 8.8 GB
ENCFF439NXY.bigWig bigWig (plus strand signal of all reads) 107.7 MB
ENCFF472YDK.bigWig bigWig (plus strand signal of unique reads) 95.4 MB
ENCFF474QQW.fastq fastq (reads) 3.7 GB
ENCFF475JEY.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF505FJR.tsv tsv (gene quantifications) 9.5 MB
ENCFF513VWH.bigWig bigWig (plus strand signal of unique reads) 126.0 MB
ENCFF517MUX.bigWig bigWig (minus strand signal of unique reads) 123.3 MB
ENCFF525JZD.bigWig bigWig (plus strand signal of unique reads) 116.1 MB
ENCFF529BFK.bigWig bigWig (plus strand signal of unique reads) 117.3 MB
ENCFF534YNP.bigWig bigWig (minus strand signal of all reads) 104.9 MB
ENCFF539DCY.fastq fastq (reads) 5.7 GB
ENCFF543TDW.bigWig bigWig (minus strand signal of all reads) 137.4 MB
ENCFF555XUL.bigWig bigWig (minus strand signal of all reads) 91.2 MB
ENCFF567TWT.bigWig bigWig (plus strand signal of all reads) 141.5 MB
ENCFF575RXM.bigWig bigWig (minus strand signal of unique reads) 84.1 MB
ENCFF590MWB.tsv tsv (transcript quantifications) 29.9 MB
ENCFF592CJJ.tar tar (differential splicing quantifications) 17.8 MB
ENCFF597YDI.fastq fastq (reads) 3.6 GB
ENCFF602NZP.bam bam (alignments) 5.5 GB
ENCFF620IKZ.tsv tsv (transcript quantifications) 27.4 MB
ENCFF625KCZ.tsv tsv (differential expression quantifications) 2.0 MB
ENCFF668GWZ.bam bam (alignments) 5.5 GB
ENCFF670TDL.bigWig bigWig (plus strand signal of all reads) 106.7 MB
ENCFF683HBN.bigWig bigWig (minus strand signal of unique reads) 93.6 MB
ENCFF686ARQ.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF687GEX.tsv tsv (transcript quantifications) 29.9 MB
ENCFF692CYY.tar tar (differential splicing quantifications) 5.8 MB
ENCFF724LKH.tsv tsv (transcript quantifications) 25.4 MB
ENCFF728HVO.bam bam (transcriptome alignments) 7.8 GB
ENCFF730TAH.bam bam (transcriptome alignments) 8.8 GB
ENCFF749QJV.bigWig bigWig (plus strand signal of all reads) 93.5 MB
ENCFF770ZYU.bigWig bigWig (minus strand signal of all reads) 139.2 MB
ENCFF773GIC.bigWig bigWig (plus strand signal of all reads) 97.4 MB
ENCFF792IDV.bigWig bigWig (minus strand signal of all reads) 92.2 MB
ENCFF795QSI.tsv tsv (gene quantifications) 10.4 MB
ENCFF843CHX.bigWig bigWig (plus strand signal of all reads) 124.9 MB
ENCFF846HFX.bigWig bigWig (plus strand signal of all reads) 139.9 MB
ENCFF854RIJ.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF855DTV.bigWig bigWig (minus strand signal of all reads) 125.3 MB
ENCFF863IMF.bigWig bigWig (minus strand signal of all reads) 122.0 MB
ENCFF870TBS.tsv tsv (gene quantifications) 9.5 MB
ENCFF879MSU.bam bam (alignments) 6.9 GB
ENCFF884LZZ.fastq fastq (reads) 5.8 GB
ENCFF889EQM.bigWig bigWig (minus strand signal of unique reads) 87.1 MB
ENCFF902PEO.tsv tsv (differential expression quantifications) 4.5 MB
ENCFF909TCY.bigWig bigWig (minus strand signal of unique reads) 94.0 MB
ENCFF909UMX.bigWig bigWig (plus strand signal of unique reads) 96.6 MB
ENCFF911KEJ.bam bam (alignments) 6.9 GB
ENCFF918CJN.tsv tsv (transcript quantifications) 25.4 MB
ENCFF919CMN.bigWig bigWig (plus strand signal of all reads) 107.6 MB
ENCFF928YOE.bigWig bigWig (minus strand signal of all reads) 105.9 MB
ENCFF959BYD.bam bam (transcriptome alignments) 12.2 GB
ENCFF963FND.bam bam (transcriptome alignments) 12.1 GB
ENCFF968PVQ.tsv tsv (transcript quantifications) 25.0 MB
ENCFF975NBV.bigWig bigWig (plus strand signal of unique reads) 96.0 MB
ENCFF990BEQ.bigWig bigWig (minus strand signal of all reads) 105.9 MB
ENCFF991MEC.bam bam (alignments) 10.7 GB
ENCFF992SPZ.bigWig bigWig (minus strand signal of unique reads) 93.0 MB
ENCSR060IWW ENCSR · via encode_api

RNA-seq on HepG2 cells treated with an shRNA knockdown against ESF1. (ESF1_BGHLV30)

Homo sapiens

92 data files
FileTypeSize
ENCFF011TIE.bigWig bigWig (minus strand signal of unique reads) 92.9 MB
ENCFF018TAO.tsv tsv (transcript quantifications) 25.4 MB
ENCFF020LMY.bigWig bigWig (plus strand signal of all reads) 84.3 MB
ENCFF034GSA.bigWig bigWig (minus strand signal of all reads) 85.6 MB
ENCFF038XRY.fastq fastq (reads) 4.0 GB
ENCFF058GKO.fastq fastq (reads) 4.4 GB
ENCFF060VFH.bigWig bigWig (minus strand signal of all reads) 96.3 MB
ENCFF079AYK.bam bam (alignments) 7.9 GB
ENCFF098ZHA.bigWig bigWig (minus strand signal of all reads) 103.9 MB
ENCFF112EHH.tsv tsv (transcript quantifications) 25.0 MB
ENCFF118TNM.bam bam (transcriptome alignments) 8.4 GB
ENCFF157NRM.bigWig bigWig (plus strand signal of unique reads) 96.8 MB
ENCFF159UBI.bigWig bigWig (minus strand signal of unique reads) 86.7 MB
ENCFF162QXY.bam bam (transcriptome alignments) 9.4 GB
ENCFF178AFG.bam bam (alignments) 5.9 GB
ENCFF180TFG.bam bam (transcriptome alignments) 9.3 GB
ENCFF193OEV.tsv tsv (differential expression quantifications) 4.3 MB
ENCFF216GQT.bam bam (transcriptome alignments) 10.5 GB
ENCFF252ETL.tsv tsv (gene quantifications) 9.5 MB
ENCFF252NEG.bam bam (alignments) 6.5 GB
ENCFF260RWC.bigWig bigWig (minus strand signal of unique reads) 94.0 MB
ENCFF261OVL.tsv tsv (gene quantifications) 10.4 MB
ENCFF268DSY.bigWig bigWig (plus strand signal of unique reads) 95.7 MB
ENCFF268SVX.fastq fastq (reads) 3.9 GB
ENCFF283GUQ.bigWig bigWig (plus strand signal of unique reads) 89.4 MB
ENCFF303CQQ.bam bam (transcriptome alignments) 8.4 GB
ENCFF306CNA.bigWig bigWig (plus strand signal of all reads) 98.3 MB
ENCFF311TZW.fastq fastq (reads) 4.3 GB
ENCFF336MHZ.bigWig bigWig (plus strand signal of all reads) 93.2 MB
ENCFF341IFJ.bigWig bigWig (minus strand signal of all reads) 96.3 MB
ENCFF369EXI.bigWig bigWig (plus strand signal of all reads) 96.6 MB
ENCFF379MRP.bigWig bigWig (plus strand signal of unique reads) 86.5 MB
ENCFF387DNG.tsv tsv (transcript quantifications) 29.9 MB
ENCFF389XLF.bam bam (alignments) 7.2 GB
ENCFF390RLI.bigWig bigWig (minus strand signal of all reads) 82.3 MB
ENCFF393ZVI.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF396VZV.bam bam (transcriptome alignments) 9.5 GB
ENCFF402IBI.tsv tsv (transcript quantifications) 27.5 MB
ENCFF405MGE.bigWig bigWig (plus strand signal of all reads) 105.9 MB
ENCFF444RBJ.bam bam (alignments) 5.8 GB
ENCFF460TJR.bigWig bigWig (plus strand signal of all reads) 87.6 MB
ENCFF474ETB.tsv tsv (differential expression quantifications) 2.0 MB
ENCFF486YRZ.bigWig bigWig (minus strand signal of unique reads) 86.9 MB
ENCFF497SZK.bam bam (alignments) 6.6 GB
ENCFF499BJQ.bigWig bigWig (minus strand signal of all reads) 95.6 MB
ENCFF501BAP.bam bam (alignments) 5.9 GB
ENCFF506UXZ.tsv tsv (transcript quantifications) 29.9 MB
ENCFF507LJA.bam bam (alignments) 7.2 GB
ENCFF514YJV.tsv tsv (gene quantifications) 10.4 MB
ENCFF522MYA.bigWig bigWig (minus strand signal of all reads) 84.6 MB
ENCFF527XBI.bigWig bigWig (minus strand signal of unique reads) 83.7 MB
ENCFF531KTZ.bigWig bigWig (plus strand signal of unique reads) 96.8 MB
ENCFF535OEF.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF549SWA.bigWig bigWig (plus strand signal of unique reads) 88.6 MB
ENCFF554ZAF.bigWig bigWig (plus strand signal of unique reads) 81.6 MB
ENCFF570ORI.bigWig bigWig (plus strand signal of unique reads) 79.6 MB
ENCFF574FCF.tsv tsv (transcript quantifications) 25.4 MB
ENCFF585UQZ.bigWig bigWig (minus strand signal of all reads) 104.5 MB
ENCFF599UUZ.bigWig bigWig (minus strand signal of unique reads) 77.1 MB
ENCFF626XJU.tar tar (differential splicing quantifications) 4.1 MB
ENCFF644XTY.bigWig bigWig (minus strand signal of all reads) 94.4 MB
ENCFF649APY.bigWig bigWig (plus strand signal of all reads) 86.5 MB
ENCFF650RXW.bigWig bigWig (plus strand signal of unique reads) 82.5 MB
ENCFF655VJP.bigWig bigWig (minus strand signal of unique reads) 85.9 MB
ENCFF675NVH.bigWig bigWig (plus strand signal of all reads) 106.5 MB
ENCFF708PNZ.tar tar (differential splicing quantifications) 3.5 MB
ENCFF710GGV.tsv tsv (gene quantifications) 9.5 MB
ENCFF711BXX.bigWig bigWig (plus strand signal of all reads) 98.3 MB
ENCFF711YVF.tsv tsv (differential expression quantifications) 5.5 MB
ENCFF725PCY.bigWig bigWig (plus strand signal of all reads) 97.3 MB
ENCFF746KGR.bigWig bigWig (plus strand signal of unique reads) 88.7 MB
ENCFF748WPT.bigWig bigWig (minus strand signal of all reads) 92.1 MB
ENCFF756TQV.bam bam (alignments) 6.5 GB
ENCFF783OZK.tsv tsv (transcript quantifications) 25.0 MB
ENCFF785WFG.bigWig bigWig (minus strand signal of unique reads) 86.1 MB
ENCFF801ZWR.bigWig bigWig (plus strand signal of unique reads) 88.6 MB
ENCFF802OJL.bigWig bigWig (plus strand signal of all reads) 106.1 MB
ENCFF802VQR.bigWig bigWig (minus strand signal of unique reads) 79.3 MB
ENCFF812AFD.bam bam (alignments) 7.9 GB
ENCFF819KVH.tar tar (differential splicing quantifications) 16.0 MB
ENCFF823WQN.bigWig bigWig (minus strand signal of unique reads) 80.0 MB
ENCFF843LUG.bam bam (alignments) 7.7 GB
ENCFF919BHG.bam bam (alignments) 7.0 GB
ENCFF919CHQ.bigWig bigWig (minus strand signal of unique reads) 94.0 MB
ENCFF926FSX.tsv tsv (gene quantifications) 9.1 MB
ENCFF931JUL.bigWig bigWig (minus strand signal of all reads) 91.0 MB
ENCFF940BSJ.bigWig bigWig (plus strand signal of all reads) 94.1 MB
ENCFF947LDM.bigWig bigWig (plus strand signal of unique reads) 89.4 MB
ENCFF947WOS.tsv tsv (transcript quantifications) 27.4 MB
ENCFF964APJ.bigWig bigWig (minus strand signal of unique reads) 86.0 MB
ENCFF983BUR.tsv tsv (gene quantifications) 9.1 MB
ENCFF983HYN.bigWig bigWig (minus strand signal of all reads) 103.8 MB
ENCSR388CNS ENCSR · via encode_api

RNA-seq on HepG2 cells treated with an shRNA knockdown against DDX47. (DDX47_BGHLV22)

Homo sapiens

92 data files
FileTypeSize
ENCFF009VQP.bigWig bigWig (plus strand signal of unique reads) 94.7 MB
ENCFF014MAV.bigWig bigWig (plus strand signal of unique reads) 86.4 MB
ENCFF016POW.tsv tsv (transcript quantifications) 29.9 MB
ENCFF017XEF.bigWig bigWig (minus strand signal of all reads) 86.5 MB
ENCFF024GCB.bigWig bigWig (plus strand signal of unique reads) 79.3 MB
ENCFF031QPS.bam bam (alignments) 5.5 GB
ENCFF034WSJ.bigWig bigWig (plus strand signal of all reads) 96.2 MB
ENCFF036NMT.bigWig bigWig (plus strand signal of all reads) 84.1 MB
ENCFF042GVK.bam bam (alignments) 6.8 GB
ENCFF055GEE.tsv tsv (gene quantifications) 10.4 MB
ENCFF056XPQ.bam bam (alignments) 7.2 GB
ENCFF061CIG.bigWig bigWig (minus strand signal of unique reads) 84.8 MB
ENCFF076SBT.bam bam (transcriptome alignments) 9.2 GB
ENCFF080LCN.tsv tsv (transcript quantifications) 25.0 MB
ENCFF080TQA.tsv tsv (transcript quantifications) 25.0 MB
ENCFF083EJX.bigWig bigWig (minus strand signal of all reads) 104.4 MB
ENCFF094XBB.bigWig bigWig (minus strand signal of unique reads) 92.2 MB
ENCFF095ZOA.bigWig bigWig (plus strand signal of all reads) 104.5 MB
ENCFF115RGL.bigWig bigWig (minus strand signal of all reads) 96.1 MB
ENCFF123NGI.bigWig bigWig (minus strand signal of all reads) 84.6 MB
ENCFF125WPO.bigWig bigWig (minus strand signal of unique reads) 84.8 MB
ENCFF138KNG.bam bam (transcriptome alignments) 8.6 GB
ENCFF147EYA.bam bam (alignments) 5.6 GB
ENCFF161KIE.bam bam (alignments) 6.9 GB
ENCFF161WKU.bigWig bigWig (plus strand signal of all reads) 105.6 MB
ENCFF164TVY.bam bam (alignments) 6.0 GB
ENCFF166PLF.bigWig bigWig (plus strand signal of all reads) 87.9 MB
ENCFF174AGS.tsv tsv (gene quantifications) 9.5 MB
ENCFF189CHF.tar tar (differential splicing quantifications) 3.5 MB
ENCFF222MPL.bam bam (alignments) 5.5 GB
ENCFF236UDQ.bigWig bigWig (minus strand signal of unique reads) 73.7 MB
ENCFF249GRD.bam bam (alignments) 5.8 GB
ENCFF274CQZ.bam bam (alignments) 5.8 GB
ENCFF274QZQ.bigWig bigWig (minus strand signal of all reads) 89.2 MB
ENCFF275NYL.tsv tsv (gene quantifications) 10.4 MB
ENCFF285ERQ.bigWig bigWig (plus strand signal of unique reads) 86.7 MB
ENCFF287BEL.tar tar (differential splicing quantifications) 16.9 MB
ENCFF315XUU.bam bam (transcriptome alignments) 8.2 GB
ENCFF327VJE.bigWig bigWig (plus strand signal of unique reads) 94.1 MB
ENCFF349UBK.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF353JIA.bigWig bigWig (plus strand signal of all reads) 81.4 MB
ENCFF358OCC.tsv tsv (transcript quantifications) 25.4 MB
ENCFF367OWY.bigWig bigWig (plus strand signal of unique reads) 86.6 MB
ENCFF376SOE.tar tar (differential splicing quantifications) 4.3 MB
ENCFF387OIP.fastq fastq (reads) 3.6 GB
ENCFF389LAF.tsv tsv (gene quantifications) 9.5 MB
ENCFF392FLM.bigWig bigWig (minus strand signal of all reads) 103.5 MB
ENCFF402OEA.tsv tsv (transcript quantifications) 27.4 MB
ENCFF434OFO.bigWig bigWig (plus strand signal of unique reads) 86.6 MB
ENCFF444ZDP.bam bam (transcriptome alignments) 8.2 GB
ENCFF446HBC.bigWig bigWig (plus strand signal of unique reads) 80.1 MB
ENCFF460UCV.bigWig bigWig (minus strand signal of unique reads) 84.7 MB
ENCFF461UVN.tsv tsv (gene quantifications) 9.1 MB
ENCFF473WAK.bigWig bigWig (plus strand signal of unique reads) 82.0 MB
ENCFF486BBQ.bigWig bigWig (plus strand signal of all reads) 93.6 MB
ENCFF487JHR.bam bam (alignments) 6.5 GB
ENCFF496XJQ.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF513FFO.tsv tsv (transcript quantifications) 29.9 MB
ENCFF513LQC.bigWig bigWig (plus strand signal of all reads) 105.6 MB
ENCFF517ULT.bigWig bigWig (minus strand signal of all reads) 83.1 MB
ENCFF529RSK.bigWig bigWig (plus strand signal of unique reads) 86.5 MB
ENCFF550SLX.tsv tsv (transcript quantifications) 27.4 MB
ENCFF593IFL.bigWig bigWig (minus strand signal of all reads) 95.2 MB
ENCFF600XML.tsv tsv (transcript quantifications) 25.4 MB
ENCFF604UYY.bigWig bigWig (plus strand signal of unique reads) 94.1 MB
ENCFF613MAF.bigWig bigWig (minus strand signal of unique reads) 77.8 MB
ENCFF613WLI.bigWig bigWig (plus strand signal of all reads) 97.2 MB
ENCFF648RMX.tsv tsv (differential expression quantifications) 4.3 MB
ENCFF670FLG.fastq fastq (reads) 3.8 GB
ENCFF673UOG.bigWig bigWig (minus strand signal of all reads) 92.2 MB
ENCFF674IKQ.bam bam (transcriptome alignments) 7.6 GB
ENCFF690IVI.bigWig bigWig (plus strand signal of unique reads) 75.4 MB
ENCFF698HJH.bigWig bigWig (plus strand signal of all reads) 85.8 MB
ENCFF705CYX.bam bam (transcriptome alignments) 7.6 GB
ENCFF714LFT.tsv tsv (differential expression quantifications) 2.0 MB
ENCFF739COV.bigWig bigWig (plus strand signal of all reads) 90.3 MB
ENCFF812IXL.bam bam (alignments) 7.2 GB
ENCFF838PYZ.bigWig bigWig (minus strand signal of all reads) 104.4 MB
ENCFF848ABS.bigWig bigWig (minus strand signal of unique reads) 84.9 MB
ENCFF859NYU.tsv tsv (gene quantifications) 9.1 MB
ENCFF864OJU.fastq fastq (reads) 3.6 GB
ENCFF874OZD.bigWig bigWig (minus strand signal of unique reads) 78.4 MB
ENCFF882VVH.tsv tsv (differential expression quantifications) 3.0 MB
ENCFF891ZTX.bigWig bigWig (minus strand signal of unique reads) 80.1 MB
ENCFF902ISR.bigWig bigWig (minus strand signal of unique reads) 84.8 MB
ENCFF907CBP.bigWig bigWig (minus strand signal of all reads) 96.1 MB
ENCFF911SSC.bigWig bigWig (plus strand signal of all reads) 97.3 MB
ENCFF917TKL.bigWig bigWig (minus strand signal of unique reads) 92.3 MB
ENCFF927LZT.fastq fastq (reads) 3.9 GB
ENCFF939DRG.bigWig bigWig (minus strand signal of all reads) 80.2 MB
ENCFF951XTL.bigWig bigWig (minus strand signal of unique reads) 92.8 MB
ENCFF958GEJ.bam bam (alignments) 6.8 GB
ENCSR611LQB ENCSR · via encode_api

RNA-seq on K562 cells treated with an shRNA knockdown against PSIP1. (PSIP1_BGKLV21)

Homo sapiens

92 data files
FileTypeSize
ENCFF007TEL.tsv tsv (gene quantifications) 9.1 MB
ENCFF020IGP.bam bam (transcriptome alignments) 3.3 GB
ENCFF039KAT.bam bam (transcriptome alignments) 5.6 GB
ENCFF046BBM.bigWig bigWig (minus strand signal of all reads) 53.7 MB
ENCFF053ESZ.tsv tsv (transcript quantifications) 25.3 MB
ENCFF059RVP.bam bam (alignments) 2.7 GB
ENCFF076HKP.bam bam (alignments) 2.7 GB
ENCFF080HQN.bam bam (alignments) 4.1 GB
ENCFF090ILO.bigWig bigWig (minus strand signal of all reads) 82.0 MB
ENCFF103XJI.bigWig bigWig (plus strand signal of all reads) 54.8 MB
ENCFF108PWJ.bigWig bigWig (plus strand signal of all reads) 83.3 MB
ENCFF111ZJY.bigWig bigWig (minus strand signal of all reads) 73.6 MB
ENCFF119NMX.tsv tsv (differential expression quantifications) 5.5 MB
ENCFF127EOO.bigWig bigWig (plus strand signal of unique reads) 54.0 MB
ENCFF135TMI.bigWig bigWig (plus strand signal of unique reads) 51.2 MB
ENCFF136GQW.tsv tsv (transcript quantifications) 29.8 MB
ENCFF149SHU.bam bam (alignments) 4.9 GB
ENCFF155DMH.bigWig bigWig (minus strand signal of unique reads) 73.2 MB
ENCFF161VTV.tsv tsv (transcript quantifications) 27.3 MB
ENCFF194WPW.bigWig bigWig (minus strand signal of unique reads) 49.8 MB
ENCFF222ZVT.tsv tsv (differential expression quantifications) 1.8 MB
ENCFF231IXG.bam bam (transcriptome alignments) 3.0 GB
ENCFF239PKI.bigWig bigWig (plus strand signal of all reads) 71.3 MB
ENCFF243ALP.tsv tsv (transcript quantifications) 27.2 MB
ENCFF247JJN.tsv tsv (differential expression quantifications) 4.3 MB
ENCFF254TTI.bigWig bigWig (minus strand signal of unique reads) 48.9 MB
ENCFF258VFU.bigWig bigWig (minus strand signal of all reads) 52.5 MB
ENCFF278UPC.bam bam (alignments) 2.2 GB
ENCFF283IBK.bigWig bigWig (minus strand signal of unique reads) 52.2 MB
ENCFF285HQR.bigWig bigWig (plus strand signal of all reads) 83.3 MB
ENCFF285IRV.bigWig bigWig (plus strand signal of unique reads) 65.9 MB
ENCFF288XZD.tsv tsv (gene quantifications) 9.4 MB
ENCFF309IST.bigWig bigWig (minus strand signal of all reads) 58.7 MB
ENCFF325DOI.bigWig bigWig (minus strand signal of all reads) 81.5 MB
ENCFF336LHQ.bigWig bigWig (minus strand signal of unique reads) 63.8 MB
ENCFF350EED.bigWig bigWig (plus strand signal of all reads) 60.1 MB
ENCFF362TMA.fastq fastq (reads) 2.8 GB
ENCFF373AXR.bam bam (transcriptome alignments) 5.7 GB
ENCFF396JWN.bam bam (alignments) 4.8 GB
ENCFF417ROM.bigWig bigWig (plus strand signal of all reads) 76.6 MB
ENCFF433XAN.bigWig bigWig (minus strand signal of all reads) 82.0 MB
ENCFF434JYY.bam bam (alignments) 4.1 GB
ENCFF434WAB.bigWig bigWig (minus strand signal of all reads) 75.0 MB
ENCFF437UZV.tar tar (differential splicing quantifications) 3.1 MB
ENCFF462TJX.bigWig bigWig (plus strand signal of unique reads) 50.2 MB
ENCFF471WOB.bigWig bigWig (plus strand signal of unique reads) 75.4 MB
ENCFF479LCT.bigWig bigWig (plus strand signal of all reads) 59.6 MB
ENCFF513EFJ.bam bam (alignments) 2.3 GB
ENCFF516EJC.bigWig bigWig (minus strand signal of all reads) 59.1 MB
ENCFF528OEG.bigWig bigWig (plus strand signal of unique reads) 75.3 MB
ENCFF528VAN.bigWig bigWig (minus strand signal of all reads) 49.7 MB
ENCFF538CMO.tar tar (differential splicing quantifications) 13.9 MB
ENCFF545BGJ.bam bam (alignments) 2.2 GB
ENCFF555RTX.bigWig bigWig (minus strand signal of unique reads) 52.0 MB
ENCFF569LDH.bigWig bigWig (plus strand signal of all reads) 60.0 MB
ENCFF598GOA.tsv tsv (transcript quantifications) 24.9 MB
ENCFF601QIC.bam bam (alignments) 2.6 GB
ENCFF610NZQ.bigWig bigWig (plus strand signal of unique reads) 53.6 MB
ENCFF633ABR.fastq fastq (reads) 1.5 GB
ENCFF654KKZ.tsv tsv (gene quantifications) 9.1 MB
ENCFF661KWA.bigWig bigWig (minus strand signal of unique reads) 68.9 MB
ENCFF677TBF.bigWig bigWig (minus strand signal of unique reads) 73.4 MB
ENCFF684VEZ.bigWig bigWig (minus strand signal of all reads) 69.6 MB
ENCFF684VHL.bigWig bigWig (plus strand signal of all reads) 74.8 MB
ENCFF702WPI.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF725WDZ.tsv tsv (gene quantifications) 9.5 MB
ENCFF726TIZ.bigWig bigWig (minus strand signal of unique reads) 72.4 MB
ENCFF733NKW.bigWig bigWig (plus strand signal of unique reads) 71.0 MB
ENCFF744ZZL.tsv tsv (gene quantifications) 10.4 MB
ENCFF755GDQ.fastq fastq (reads) 1.4 GB
ENCFF755WTP.bam bam (transcriptome alignments) 3.0 GB
ENCFF763BGL.bam bam (alignments) 4.9 GB
ENCFF774DBZ.bigWig bigWig (minus strand signal of all reads) 59.0 MB
ENCFF782TUM.tsv tsv (gene quantifications) 10.4 MB
ENCFF785CFT.bigWig bigWig (plus strand signal of all reads) 82.9 MB
ENCFF807HTV.bigWig bigWig (plus strand signal of all reads) 53.5 MB
ENCFF810NDJ.tsv tsv (transcript quantifications) 29.8 MB
ENCFF813VQL.bigWig bigWig (minus strand signal of unique reads) 68.7 MB
ENCFF845SRY.bigWig bigWig (minus strand signal of unique reads) 52.6 MB
ENCFF850SUQ.bigWig bigWig (plus strand signal of unique reads) 70.4 MB
ENCFF856PHO.bigWig bigWig (plus strand signal of unique reads) 47.7 MB
ENCFF859HFC.bam bam (alignments) 4.1 GB
ENCFF863QBT.tsv tsv (transcript quantifications) 24.9 MB
ENCFF874TGV.bam bam (transcriptome alignments) 6.3 GB
ENCFF877RMI.bigWig bigWig (minus strand signal of unique reads) 46.2 MB
ENCFF898PRU.bigWig bigWig (plus strand signal of unique reads) 53.6 MB
ENCFF914NEH.tsv tsv (transcript quantifications) 25.3 MB
ENCFF921FNN.tar tar (differential splicing quantifications) 3.6 MB
ENCFF960TUZ.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF975LDB.fastq fastq (reads) 2.5 GB
ENCFF981MMB.bigWig bigWig (plus strand signal of unique reads) 74.6 MB
ENCFF994DRC.bigWig bigWig (plus strand signal of all reads) 50.9 MB
ENCSR678MVE ENCSR · via encode_api

shRNA knockdown against UCHL5 in K562 cells followed by RNA-seq. (UCHL5_BGKLV19)

Homo sapiens

92 data files
FileTypeSize
ENCFF012BUA.fastq fastq (reads) 2.3 GB
ENCFF021BEY.bigWig bigWig (plus strand signal of all reads) 94.3 MB
ENCFF028TQU.bigWig bigWig (minus strand signal of unique reads) 76.1 MB
ENCFF029JVO.bigWig bigWig (minus strand signal of all reads) 73.2 MB
ENCFF029XBI.bigWig bigWig (plus strand signal of all reads) 79.8 MB
ENCFF039XUG.bigWig bigWig (plus strand signal of all reads) 94.3 MB
ENCFF049QMS.bigWig bigWig (plus strand signal of unique reads) 84.8 MB
ENCFF050XDP.bigWig bigWig (plus strand signal of unique reads) 79.5 MB
ENCFF088KVY.bigWig bigWig (minus strand signal of all reads) 85.4 MB
ENCFF088NWO.bigWig bigWig (minus strand signal of unique reads) 82.3 MB
ENCFF096NRJ.bam bam (alignments) 4.3 GB
ENCFF098OOD.tsv tsv (transcript quantifications) 29.8 MB
ENCFF117FLR.bigWig bigWig (plus strand signal of unique reads) 77.9 MB
ENCFF132GZQ.tsv tsv (transcript quantifications) 27.4 MB
ENCFF159GWN.bigWig bigWig (minus strand signal of unique reads) 67.6 MB
ENCFF160TYC.fastq fastq (reads) 2.1 GB
ENCFF214YRG.bigWig bigWig (plus strand signal of unique reads) 73.0 MB
ENCFF249MEV.tsv tsv (gene quantifications) 9.4 MB
ENCFF267DAY.tsv tsv (transcript quantifications) 27.3 MB
ENCFF286BEC.bigWig bigWig (plus strand signal of unique reads) 73.4 MB
ENCFF288HUX.bigWig bigWig (minus strand signal of all reads) 93.1 MB
ENCFF293SVM.bigWig bigWig (minus strand signal of unique reads) 73.0 MB
ENCFF296FHU.bam bam (alignments) 4.3 GB
ENCFF298BSG.bigWig bigWig (plus strand signal of all reads) 86.5 MB
ENCFF298FMS.bigWig bigWig (plus strand signal of all reads) 81.0 MB
ENCFF325REU.fastq fastq (reads) 2.2 GB
ENCFF327BZR.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF366JRE.tsv tsv (differential expression quantifications) 4.2 MB
ENCFF387DOY.bam bam (alignments) 3.6 GB
ENCFF418PJD.bigWig bigWig (minus strand signal of all reads) 86.0 MB
ENCFF419VTG.bigWig bigWig (plus strand signal of all reads) 85.7 MB
ENCFF425UUU.bam bam (alignments) 3.2 GB
ENCFF426LFJ.bam bam (alignments) 3.5 GB
ENCFF433OAD.bigWig bigWig (minus strand signal of unique reads) 82.6 MB
ENCFF438KFN.bigWig bigWig (plus strand signal of all reads) 87.5 MB
ENCFF451CNF.bigWig bigWig (minus strand signal of unique reads) 82.1 MB
ENCFF459KUZ.tsv tsv (differential expression quantifications) 5.5 MB
ENCFF467NVW.tar tar (differential splicing quantifications) 4.0 MB
ENCFF473QCC.tsv tsv (transcript quantifications) 25.3 MB
ENCFF479ZAE.bigWig bigWig (plus strand signal of all reads) 77.7 MB
ENCFF489NQZ.bigWig bigWig (minus strand signal of unique reads) 77.8 MB
ENCFF491VIH.bigWig bigWig (minus strand signal of unique reads) 79.0 MB
ENCFF514ABQ.tsv tsv (gene quantifications) 9.1 MB
ENCFF528MAD.bigWig bigWig (plus strand signal of unique reads) 75.2 MB
ENCFF533MMF.bigWig bigWig (plus strand signal of unique reads) 69.6 MB
ENCFF541FYG.bigWig bigWig (minus strand signal of unique reads) 71.4 MB
ENCFF549DNR.tsv tsv (transcript quantifications) 25.3 MB
ENCFF551VXZ.bigWig bigWig (minus strand signal of all reads) 84.6 MB
ENCFF564OOH.bigWig bigWig (minus strand signal of unique reads) 75.0 MB
ENCFF576CIP.bigWig bigWig (plus strand signal of unique reads) 84.0 MB
ENCFF581WGW.tsv tsv (differential expression quantifications) 3.0 MB
ENCFF582VLS.bigWig bigWig (minus strand signal of all reads) 78.4 MB
ENCFF618HKK.bam bam (alignments) 3.3 GB
ENCFF627BHH.bam bam (transcriptome alignments) 5.1 GB
ENCFF646BYM.bigWig bigWig (minus strand signal of all reads) 79.5 MB
ENCFF652TKM.bigWig bigWig (plus strand signal of unique reads) 84.3 MB
ENCFF658NSQ.bam bam (alignments) 4.2 GB
ENCFF660LXD.bigWig bigWig (minus strand signal of all reads) 76.7 MB
ENCFF669IME.bigWig bigWig (plus strand signal of unique reads) 76.8 MB
ENCFF683EYI.bigWig bigWig (plus strand signal of unique reads) 81.1 MB
ENCFF698ZDI.tsv tsv (gene quantifications) 10.4 MB
ENCFF729OBB.tsv tsv (transcript quantifications) 24.8 MB
ENCFF744WJG.bam bam (transcriptome alignments) 4.8 GB
ENCFF748VED.fastq fastq (reads) 2.0 GB
ENCFF749TKX.bam bam (alignments) 4.0 GB
ENCFF756VWD.tar tar (differential splicing quantifications) 3.4 MB
ENCFF763DZM.tsv tsv (gene quantifications) 9.4 MB
ENCFF764OVM.bigWig bigWig (plus strand signal of all reads) 74.6 MB
ENCFF768UEI.bigWig bigWig (minus strand signal of unique reads) 71.5 MB
ENCFF776DKO.tsv tsv (transcript quantifications) 29.8 MB
ENCFF779LUW.bam bam (transcriptome alignments) 5.5 GB
ENCFF781QVH.bam bam (transcriptome alignments) 4.4 GB
ENCFF800EXB.bam bam (alignments) 3.2 GB
ENCFF805ONP.bam bam (alignments) 3.5 GB
ENCFF843IBU.tsv tsv (transcript quantifications) 24.8 MB
ENCFF857AKI.bam bam (transcriptome alignments) 4.9 GB
ENCFF857NHH.bigWig bigWig (plus strand signal of unique reads) 77.9 MB
ENCFF862WTB.bigWig bigWig (minus strand signal of all reads) 84.6 MB
ENCFF868PXD.bigWig bigWig (minus strand signal of all reads) 92.1 MB
ENCFF877KJC.bigWig bigWig (minus strand signal of all reads) 85.4 MB
ENCFF901FEI.bigWig bigWig (plus strand signal of all reads) 93.3 MB
ENCFF904AQY.bam bam (alignments) 4.0 GB
ENCFF920OQQ.tsv tsv (gene quantifications) 9.1 MB
ENCFF922PAN.bam bam (alignments) 3.8 GB
ENCFF924WTL.bam bam (transcriptome alignments) 4.5 GB
ENCFF955VIF.tsv tsv (gene quantifications) 10.4 MB
ENCFF955ZKD.bigWig bigWig (minus strand signal of unique reads) 76.0 MB
ENCFF959ECR.bigWig bigWig (minus strand signal of all reads) 93.1 MB
ENCFF966NMD.bigWig bigWig (plus strand signal of all reads) 85.6 MB
ENCFF970ZTV.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF980DKT.bigWig bigWig (plus strand signal of all reads) 86.5 MB
ENCFF987ONT.tar tar (differential splicing quantifications) 14.4 MB
ENCSR029LGJ ENCSR · via encode_api

shRNA knockdown against DDX51 in K562 cells followed by RNA-seq. (DDX51_BGKLV19)

Homo sapiens

92 data files
FileTypeSize
ENCFF004VQH.bigWig bigWig (plus strand signal of unique reads) 78.8 MB
ENCFF008UJZ.tar tar (differential splicing quantifications) 15.1 MB
ENCFF016APX.bam bam (alignments) 3.8 GB
ENCFF017JNG.bigWig bigWig (minus strand signal of all reads) 95.7 MB
ENCFF053HIP.bigWig bigWig (minus strand signal of all reads) 92.3 MB
ENCFF072FHU.tsv tsv (gene quantifications) 10.4 MB
ENCFF106HLD.bigWig bigWig (minus strand signal of all reads) 84.3 MB
ENCFF144IZI.fastq fastq (reads) 2.7 GB
ENCFF154KDC.bigWig bigWig (minus strand signal of unique reads) 80.3 MB
ENCFF175AAK.bigWig bigWig (minus strand signal of all reads) 97.8 MB
ENCFF193PNB.bam bam (transcriptome alignments) 7.0 GB
ENCFF193YTF.tar tar (differential splicing quantifications) 3.6 MB
ENCFF197BXD.bigWig bigWig (plus strand signal of all reads) 93.5 MB
ENCFF197WZP.bam bam (alignments) 5.1 GB
ENCFF214HUU.bam bam (transcriptome alignments) 6.2 GB
ENCFF256IAV.tsv tsv (differential expression quantifications) 5.5 MB
ENCFF258NTN.bigWig bigWig (minus strand signal of unique reads) 76.2 MB
ENCFF265DPE.bam bam (alignments) 4.4 GB
ENCFF270DBA.bam bam (alignments) 4.4 GB
ENCFF280DVV.bigWig bigWig (minus strand signal of all reads) 87.1 MB
ENCFF292HRK.bigWig bigWig (minus strand signal of all reads) 81.8 MB
ENCFF307ITN.bigWig bigWig (plus strand signal of all reads) 88.2 MB
ENCFF309PCT.bam bam (alignments) 5.3 GB
ENCFF325CMN.bigWig bigWig (plus strand signal of all reads) 79.3 MB
ENCFF347XKV.bam bam (alignments) 3.7 GB
ENCFF349RMY.tsv tsv (gene quantifications) 9.1 MB
ENCFF359BBQ.bigWig bigWig (plus strand signal of unique reads) 82.5 MB
ENCFF359ZQU.bam bam (alignments) 4.6 GB
ENCFF362TRS.tar tar (differential splicing quantifications) 4.1 MB
ENCFF389KQP.bigWig bigWig (plus strand signal of all reads) 99.0 MB
ENCFF402FXS.bam bam (alignments) 3.8 GB
ENCFF411PTR.tsv tsv (transcript quantifications) 24.9 MB
ENCFF411PYL.bam bam (alignments) 4.6 GB
ENCFF423ZCB.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF427HUQ.bigWig bigWig (plus strand signal of all reads) 85.3 MB
ENCFF436MOG.bigWig bigWig (plus strand signal of all reads) 92.3 MB
ENCFF454IZA.bigWig bigWig (plus strand signal of unique reads) 86.3 MB
ENCFF459NCI.bigWig bigWig (plus strand signal of unique reads) 82.1 MB
ENCFF460WNE.bigWig bigWig (minus strand signal of all reads) 88.6 MB
ENCFF472GXS.tsv tsv (transcript quantifications) 27.4 MB
ENCFF488HKA.bam bam (transcriptome alignments) 5.3 GB
ENCFF497QLL.tsv tsv (gene quantifications) 9.5 MB
ENCFF505PJR.bigWig bigWig (minus strand signal of all reads) 97.8 MB
ENCFF526WOG.tsv tsv (gene quantifications) 9.5 MB
ENCFF530EAL.bigWig bigWig (minus strand signal of unique reads) 72.2 MB
ENCFF544JTH.bigWig bigWig (minus strand signal of unique reads) 80.9 MB
ENCFF549TAE.bigWig bigWig (minus strand signal of unique reads) 85.0 MB
ENCFF554LWM.bigWig bigWig (plus strand signal of all reads) 97.0 MB
ENCFF562YSS.bigWig bigWig (minus strand signal of unique reads) 84.1 MB
ENCFF591NPO.tsv tsv (gene quantifications) 9.1 MB
ENCFF619OJQ.bam bam (transcriptome alignments) 6.0 GB
ENCFF633TUS.bigWig bigWig (minus strand signal of all reads) 77.6 MB
ENCFF634NUL.fastq fastq (reads) 2.9 GB
ENCFF635YSU.tsv tsv (transcript quantifications) 27.4 MB
ENCFF644DPD.bigWig bigWig (plus strand signal of unique reads) 87.1 MB
ENCFF647IYH.bigWig bigWig (minus strand signal of unique reads) 76.6 MB
ENCFF648WOE.bigWig bigWig (minus strand signal of unique reads) 79.8 MB
ENCFF654FVU.bigWig bigWig (plus strand signal of all reads) 86.1 MB
ENCFF658DQU.bam bam (alignments) 5.3 GB
ENCFF662YDR.bigWig bigWig (plus strand signal of unique reads) 82.0 MB
ENCFF665JHV.bam bam (transcriptome alignments) 6.2 GB
ENCFF674PIV.bigWig bigWig (plus strand signal of all reads) 99.1 MB
ENCFF682ZAZ.tsv tsv (transcript quantifications) 24.9 MB
ENCFF686IAP.bigWig bigWig (plus strand signal of unique reads) 79.5 MB
ENCFF700MBD.tsv tsv (gene quantifications) 10.4 MB
ENCFF701BZS.fastq fastq (reads) 2.3 GB
ENCFF702OHY.bigWig bigWig (plus strand signal of all reads) 93.6 MB
ENCFF723PRL.tsv tsv (differential expression quantifications) 2.8 MB
ENCFF737BYP.bigWig bigWig (minus strand signal of unique reads) 80.7 MB
ENCFF751OOB.bigWig bigWig (plus strand signal of unique reads) 74.5 MB
ENCFF759TPL.bigWig bigWig (minus strand signal of unique reads) 77.3 MB
ENCFF772DLS.tsv tsv (transcript quantifications) 29.8 MB
ENCFF772MUC.bam bam (alignments) 4.4 GB
ENCFF817GGU.bam bam (transcriptome alignments) 5.3 GB
ENCFF839VPP.bigWig bigWig (minus strand signal of unique reads) 80.0 MB
ENCFF848KZR.bigWig bigWig (minus strand signal of all reads) 83.6 MB
ENCFF853EFO.bigWig bigWig (plus strand signal of all reads) 83.0 MB
ENCFF855WNV.bigWig bigWig (plus strand signal of all reads) 90.3 MB
ENCFF865UXC.tsv tsv (transcript quantifications) 25.3 MB
ENCFF868GVZ.bigWig bigWig (minus strand signal of all reads) 91.0 MB
ENCFF874NQM.bigWig bigWig (plus strand signal of unique reads) 87.0 MB
ENCFF884OIA.bam bam (alignments) 4.3 GB
ENCFF885ZPV.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF893DVI.fastq fastq (reads) 2.5 GB
ENCFF894RUS.bigWig bigWig (minus strand signal of all reads) 92.3 MB
ENCFF896UJF.bigWig bigWig (minus strand signal of unique reads) 85.1 MB
ENCFF945TOE.bigWig bigWig (plus strand signal of unique reads) 82.5 MB
ENCFF946HDP.tsv tsv (differential expression quantifications) 4.2 MB
ENCFF965OEH.tsv tsv (transcript quantifications) 25.3 MB
ENCFF967PDL.bigWig bigWig (plus strand signal of unique reads) 83.1 MB
ENCFF973UKQ.bigWig bigWig (plus strand signal of unique reads) 78.1 MB
ENCFF973YME.tsv tsv (transcript quantifications) 29.8 MB
ENCSR913ZWR ENCSR · via encode_api

shRNA knockdown against DDX52 in HepG2 cells followed by RNA-seq. (DDX52_BGHLV16)

Homo sapiens

92 data files
FileTypeSize
ENCFF031FPH.bigWig bigWig (minus strand signal of all reads) 78.1 MB
ENCFF059HJB.bigWig bigWig (plus strand signal of all reads) 78.4 MB
ENCFF060ZHO.tsv tsv (gene quantifications) 9.1 MB
ENCFF072MST.bigWig bigWig (minus strand signal of all reads) 69.6 MB
ENCFF074SVD.fastq fastq (reads) 2.2 GB
ENCFF087OAX.bam bam (transcriptome alignments) 6.3 GB
ENCFF108BXX.bigWig bigWig (plus strand signal of all reads) 79.9 MB
ENCFF111MRT.bigWig bigWig (minus strand signal of unique reads) 65.2 MB
ENCFF120YXH.bigWig bigWig (minus strand signal of all reads) 77.5 MB
ENCFF136FDS.bigWig bigWig (plus strand signal of all reads) 79.9 MB
ENCFF143MDK.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF148PLS.bigWig bigWig (plus strand signal of all reads) 73.4 MB
ENCFF153TVF.tsv tsv (transcript quantifications) 24.9 MB
ENCFF153WQI.bigWig bigWig (minus strand signal of unique reads) 68.2 MB
ENCFF168WNT.tsv tsv (differential expression quantifications) 1.8 MB
ENCFF190TZR.bigWig bigWig (plus strand signal of all reads) 68.0 MB
ENCFF193ITS.bigWig bigWig (plus strand signal of unique reads) 71.9 MB
ENCFF194LTI.bigWig bigWig (plus strand signal of unique reads) 72.3 MB
ENCFF196JNN.tsv tsv (gene quantifications) 9.1 MB
ENCFF204EMZ.bigWig bigWig (plus strand signal of unique reads) 66.2 MB
ENCFF224KIJ.bam bam (alignments) 4.0 GB
ENCFF239WPV.bam bam (alignments) 3.8 GB
ENCFF246WQT.bam bam (alignments) 3.3 GB
ENCFF281YAH.bigWig bigWig (minus strand signal of all reads) 78.1 MB
ENCFF284CID.bigWig bigWig (minus strand signal of all reads) 69.0 MB
ENCFF284TWE.tsv tsv (transcript quantifications) 25.3 MB
ENCFF288HMX.bigWig bigWig (minus strand signal of unique reads) 68.6 MB
ENCFF302LFH.bigWig bigWig (minus strand signal of unique reads) 69.7 MB
ENCFF307SIY.fastq fastq (reads) 2.4 GB
ENCFF312NHY.tsv tsv (transcript quantifications) 27.3 MB
ENCFF313GLO.bigWig bigWig (plus strand signal of unique reads) 72.0 MB
ENCFF316JTP.bigWig bigWig (plus strand signal of all reads) 71.3 MB
ENCFF334MNJ.bigWig bigWig (plus strand signal of unique reads) 64.0 MB
ENCFF338JHH.bam bam (transcriptome alignments) 5.6 GB
ENCFF343QYB.bam bam (alignments) 4.5 GB
ENCFF350RXG.bigWig bigWig (plus strand signal of unique reads) 65.9 MB
ENCFF357WXC.bigWig bigWig (plus strand signal of unique reads) 67.2 MB
ENCFF364XJB.bam bam (alignments) 3.4 GB
ENCFF371UIG.bigWig bigWig (plus strand signal of unique reads) 70.8 MB
ENCFF394PAK.tsv tsv (transcript quantifications) 25.3 MB
ENCFF420LRF.bigWig bigWig (minus strand signal of all reads) 70.2 MB
ENCFF423RQS.bigWig bigWig (minus strand signal of all reads) 71.6 MB
ENCFF425AIA.bam bam (alignments) 4.0 GB
ENCFF439IHF.bigWig bigWig (minus strand signal of unique reads) 65.9 MB
ENCFF468YSS.bigWig bigWig (plus strand signal of unique reads) 70.3 MB
ENCFF493HGB.tar tar (differential splicing quantifications) 2.6 MB
ENCFF495HCG.bigWig bigWig (minus strand signal of unique reads) 61.9 MB
ENCFF500XXK.tsv tsv (gene quantifications) 9.4 MB
ENCFF503LIJ.bam bam (alignments) 3.7 GB
ENCFF519PJA.bigWig bigWig (plus strand signal of unique reads) 67.8 MB
ENCFF522PMH.bigWig bigWig (minus strand signal of all reads) 76.6 MB
ENCFF526SJR.bigWig bigWig (minus strand signal of all reads) 67.9 MB
ENCFF546HTN.bigWig bigWig (minus strand signal of all reads) 76.7 MB
ENCFF558TSU.tar tar (differential splicing quantifications) 3.5 MB
ENCFF573XLA.fastq fastq (reads) 2.2 GB
ENCFF607HAT.bigWig bigWig (minus strand signal of unique reads) 64.1 MB
ENCFF608NGH.bam bam (alignments) 3.9 GB
ENCFF608RFE.tsv tsv (transcript quantifications) 29.8 MB
ENCFF620FWY.bigWig bigWig (minus strand signal of all reads) 66.4 MB
ENCFF622HSW.tsv tsv (transcript quantifications) 29.8 MB
ENCFF628SDK.tsv tsv (gene quantifications) 10.4 MB
ENCFF645TWW.bigWig bigWig (minus strand signal of unique reads) 64.0 MB
ENCFF653INZ.bam bam (alignments) 4.4 GB
ENCFF660GJF.bam bam (transcriptome alignments) 5.0 GB
ENCFF677FKS.bam bam (transcriptome alignments) 5.6 GB
ENCFF681EJO.bigWig bigWig (plus strand signal of all reads) 70.5 MB
ENCFF691NFF.bigWig bigWig (minus strand signal of unique reads) 69.7 MB
ENCFF693TWD.bigWig bigWig (plus strand signal of all reads) 78.4 MB
ENCFF696MHC.tsv tsv (gene quantifications) 10.4 MB
ENCFF697UQO.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF708EVH.bam bam (alignments) 3.3 GB
ENCFF712YBA.bigWig bigWig (minus strand signal of unique reads) 68.1 MB
ENCFF730LKE.bigWig bigWig (plus strand signal of all reads) 77.6 MB
ENCFF739SNW.bam bam (transcriptome alignments) 5.6 GB
ENCFF756RDZ.bam bam (alignments) 3.7 GB
ENCFF758TRE.bam bam (alignments) 4.5 GB
ENCFF769IKZ.tsv tsv (gene quantifications) 9.4 MB
ENCFF773ZUH.bigWig bigWig (plus strand signal of unique reads) 70.4 MB
ENCFF785TGB.bigWig bigWig (plus strand signal of all reads) 69.6 MB
ENCFF791NKV.bam bam (transcriptome alignments) 4.9 GB
ENCFF801TAC.bigWig bigWig (minus strand signal of unique reads) 65.6 MB
ENCFF809VQF.bigWig bigWig (plus strand signal of all reads) 79.2 MB
ENCFF810GMN.tsv tsv (transcript quantifications) 24.9 MB
ENCFF813FLC.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF835TOQ.bigWig bigWig (minus strand signal of all reads) 76.1 MB
ENCFF853TRP.bigWig bigWig (plus strand signal of all reads) 71.7 MB
ENCFF919HAU.bigWig bigWig (plus strand signal of unique reads) 67.6 MB
ENCFF949KJE.tsv tsv (transcript quantifications) 27.3 MB
ENCFF962JRA.bigWig bigWig (minus strand signal of unique reads) 70.1 MB
ENCFF972FSH.fastq fastq (reads) 2.5 GB
ENCFF991TQV.tsv tsv (differential expression quantifications) 4.1 MB
ENCFF992BKO.tar tar (differential splicing quantifications) 13.9 MB
ENCSR755KOM ENCSR · via encode_api

RNA-seq on HepG2 cells treated with an shRNA knockdown against FUBP3. (FUBP3-BGHLV12)

Homo sapiens

92 data files
FileTypeSize
ENCFF015TUS.bigWig bigWig (minus strand signal of unique reads) 71.0 MB
ENCFF027JEH.tsv tsv (gene quantifications) 9.1 MB
ENCFF064YTF.bigWig bigWig (minus strand signal of unique reads) 68.0 MB
ENCFF079LFL.tsv tsv (transcript quantifications) 24.9 MB
ENCFF080UZT.bigWig bigWig (plus strand signal of unique reads) 74.0 MB
ENCFF081OSF.bigWig bigWig (minus strand signal of unique reads) 68.0 MB
ENCFF083AOC.tsv tsv (transcript quantifications) 29.8 MB
ENCFF089OGO.bam bam (transcriptome alignments) 6.9 GB
ENCFF097VCV.tsv tsv (differential expression quantifications) 3.0 MB
ENCFF106HNU.bam bam (alignments) 4.7 GB
ENCFF108FMK.bigWig bigWig (plus strand signal of all reads) 74.3 MB
ENCFF109ZAQ.bigWig bigWig (plus strand signal of all reads) 80.2 MB
ENCFF124VMT.fastq fastq (reads) 2.6 GB
ENCFF148CWS.fastq fastq (reads) 3.1 GB
ENCFF162PSX.bam bam (alignments) 4.6 GB
ENCFF163BZF.bam bam (alignments) 5.5 GB
ENCFF164IAT.tar tar (differential splicing quantifications) 15.1 MB
ENCFF170HJE.bam bam (alignments) 4.2 GB
ENCFF173UFY.fastq fastq (reads) 2.9 GB
ENCFF196WXR.bigWig bigWig (minus strand signal of all reads) 73.7 MB
ENCFF198EUO.bigWig bigWig (plus strand signal of all reads) 69.6 MB
ENCFF208JVU.bigWig bigWig (minus strand signal of all reads) 70.8 MB
ENCFF211GEN.tsv tsv (gene quantifications) 9.5 MB
ENCFF215MTI.tsv tsv (transcript quantifications) 27.3 MB
ENCFF218TTC.bigWig bigWig (minus strand signal of unique reads) 65.5 MB
ENCFF233WRL.bigWig bigWig (plus strand signal of unique reads) 74.0 MB
ENCFF248GRO.fastq fastq (reads) 2.8 GB
ENCFF270TYU.bigWig bigWig (minus strand signal of unique reads) 72.4 MB
ENCFF295STW.tar tar (differential splicing quantifications) 3.4 MB
ENCFF303GIX.tsv tsv (gene quantifications) 10.4 MB
ENCFF315ABE.bigWig bigWig (plus strand signal of unique reads) 69.5 MB
ENCFF327JYP.bam bam (transcriptome alignments) 6.3 GB
ENCFF354YIG.bigWig bigWig (minus strand signal of unique reads) 71.7 MB
ENCFF379ADH.bigWig bigWig (plus strand signal of unique reads) 69.4 MB
ENCFF381GRL.bam bam (transcriptome alignments) 7.7 GB
ENCFF397CVK.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF410LSF.bam bam (alignments) 5.0 GB
ENCFF434DKU.bigWig bigWig (plus strand signal of all reads) 72.9 MB
ENCFF441XIQ.bam bam (alignments) 5.0 GB
ENCFF449AHZ.bigWig bigWig (plus strand signal of unique reads) 74.0 MB
ENCFF452GUP.bigWig bigWig (minus strand signal of unique reads) 63.4 MB
ENCFF469IYI.bigWig bigWig (minus strand signal of all reads) 79.8 MB
ENCFF507TIC.bigWig bigWig (minus strand signal of unique reads) 67.2 MB
ENCFF510GDP.bam bam (transcriptome alignments) 7.0 GB
ENCFF513ADH.bam bam (alignments) 4.9 GB
ENCFF514CAL.bigWig bigWig (plus strand signal of unique reads) 67.2 MB
ENCFF530QOR.bam bam (transcriptome alignments) 6.9 GB
ENCFF550CBD.tsv tsv (differential expression quantifications) 4.2 MB
ENCFF552RQD.tsv tsv (transcript quantifications) 27.1 MB
ENCFF554GZG.tsv tsv (transcript quantifications) 24.9 MB
ENCFF577EPE.tsv tsv (gene quantifications) 10.4 MB
ENCFF579ORU.bigWig bigWig (minus strand signal of unique reads) 72.3 MB
ENCFF583CLE.bam bam (transcriptome alignments) 6.2 GB
ENCFF584EDA.bigWig bigWig (plus strand signal of all reads) 81.3 MB
ENCFF585QWZ.tsv tsv (gene quantifications) 9.1 MB
ENCFF590DKE.bigWig bigWig (plus strand signal of unique reads) 68.6 MB
ENCFF593IPB.tsv tsv (transcript quantifications) 29.8 MB
ENCFF616XCE.bigWig bigWig (minus strand signal of all reads) 80.2 MB
ENCFF642RQE.bam bam (alignments) 4.6 GB
ENCFF654OJK.tsv tsv (differential expression quantifications) 1.8 MB
ENCFF655FOI.bigWig bigWig (plus strand signal of all reads) 74.8 MB
ENCFF677SVF.bigWig bigWig (minus strand signal of all reads) 71.7 MB
ENCFF680CPX.tsv tsv (transcript quantifications) 25.3 MB
ENCFF699ZAY.bigWig bigWig (plus strand signal of unique reads) 65.1 MB
ENCFF703PGV.tsv tsv (differential expression quantifications) 5.5 MB
ENCFF712ZXV.bigWig bigWig (minus strand signal of all reads) 68.4 MB
ENCFF717FMO.bigWig bigWig (minus strand signal of all reads) 79.8 MB
ENCFF722ZRT.bam bam (alignments) 5.5 GB
ENCFF725BLU.bigWig bigWig (minus strand signal of unique reads) 71.7 MB
ENCFF733RDK.bigWig bigWig (minus strand signal of all reads) 78.8 MB
ENCFF746TRD.bigWig bigWig (minus strand signal of all reads) 80.2 MB
ENCFF751TUH.bigWig bigWig (plus strand signal of all reads) 81.3 MB
ENCFF770QMT.bigWig bigWig (plus strand signal of all reads) 72.8 MB
ENCFF771HJL.bigWig bigWig (minus strand signal of unique reads) 72.4 MB
ENCFF779RHX.bam bam (alignments) 4.3 GB
ENCFF780ALW.bigWig bigWig (plus strand signal of unique reads) 68.8 MB
ENCFF806NED.tsv tsv (gene quantifications) 9.5 MB
ENCFF819NVO.bigWig bigWig (plus strand signal of all reads) 72.0 MB
ENCFF825ALY.bigWig bigWig (plus strand signal of all reads) 79.7 MB
ENCFF837ISV.bigWig bigWig (plus strand signal of unique reads) 73.3 MB
ENCFF857WEY.bigWig bigWig (minus strand signal of all reads) 73.1 MB
ENCFF880UOR.bam bam (alignments) 5.4 GB
ENCFF886XJU.bigWig bigWig (minus strand signal of all reads) 79.3 MB
ENCFF896YOR.bigWig bigWig (plus strand signal of unique reads) 72.7 MB
ENCFF901WRD.bigWig bigWig (minus strand signal of all reads) 71.9 MB
ENCFF908MHG.bigWig bigWig (plus strand signal of unique reads) 73.3 MB
ENCFF916GQX.tar tar (differential splicing quantifications) 3.0 MB
ENCFF941VTX.bigWig bigWig (minus strand signal of unique reads) 67.2 MB
ENCFF965PSE.bigWig bigWig (plus strand signal of all reads) 80.9 MB
ENCFF965VIU.tsv tsv (transcript quantifications) 25.3 MB
ENCFF974DGK.bam bam (alignments) 4.2 GB
ENCFF998GXS.bigWig bigWig (plus strand signal of all reads) 80.9 MB
ENCSR167JPY ENCSR · via encode_api

shRNA knockdown against SRP68 in HepG2 cells followed by RNA-seq. (SRP68_BGHLV17)

Homo sapiens

92 data files
FileTypeSize
ENCFF016LFJ.bam bam (alignments) 4.4 GB
ENCFF051SUL.bigWig bigWig (plus strand signal of unique reads) 83.9 MB
ENCFF058XFX.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF081ZHO.bigWig bigWig (minus strand signal of all reads) 86.6 MB
ENCFF090RBQ.tsv tsv (gene quantifications) 9.4 MB
ENCFF115GLB.bigWig bigWig (plus strand signal of unique reads) 83.9 MB
ENCFF116YWF.tsv tsv (transcript quantifications) 29.8 MB
ENCFF137KFS.bam bam (alignments) 5.1 GB
ENCFF153PWR.bigWig bigWig (minus strand signal of all reads) 95.8 MB
ENCFF157VWV.tsv tsv (gene quantifications) 10.4 MB
ENCFF158SOC.bam bam (transcriptome alignments) 7.1 GB
ENCFF171XZN.bigWig bigWig (plus strand signal of all reads) 83.6 MB
ENCFF185EZM.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF186ZSF.bigWig bigWig (plus strand signal of all reads) 92.3 MB
ENCFF187GDS.bam bam (alignments) 5.8 GB
ENCFF205HCC.tsv tsv (transcript quantifications) 25.3 MB
ENCFF222PMA.bigWig bigWig (plus strand signal of unique reads) 88.8 MB
ENCFF237CKC.bam bam (transcriptome alignments) 6.3 GB
ENCFF283KJW.bigWig bigWig (plus strand signal of unique reads) 88.6 MB
ENCFF291IZK.bigWig bigWig (minus strand signal of unique reads) 78.1 MB
ENCFF296KUF.bigWig bigWig (minus strand signal of all reads) 90.2 MB
ENCFF305CGD.bigWig bigWig (minus strand signal of all reads) 90.0 MB
ENCFF306DTE.bam bam (alignments) 4.9 GB
ENCFF309WEG.tsv tsv (gene quantifications) 9.4 MB
ENCFF329EJG.bigWig bigWig (plus strand signal of unique reads) 82.9 MB
ENCFF336OVT.tsv tsv (gene quantifications) 10.4 MB
ENCFF338NGA.bigWig bigWig (plus strand signal of unique reads) 78.6 MB
ENCFF339LDN.bigWig bigWig (minus strand signal of unique reads) 80.8 MB
ENCFF362YOD.bigWig bigWig (minus strand signal of all reads) 87.2 MB
ENCFF376MZY.tar tar (differential splicing quantifications) 3.3 MB
ENCFF376NVO.fastq fastq (reads) 2.8 GB
ENCFF383ENF.bigWig bigWig (plus strand signal of unique reads) 83.8 MB
ENCFF402OGW.fastq fastq (reads) 3.3 GB
ENCFF402SKG.bam bam (alignments) 4.9 GB
ENCFF415SFC.bigWig bigWig (minus strand signal of unique reads) 81.7 MB
ENCFF416UMU.bigWig bigWig (minus strand signal of unique reads) 86.1 MB
ENCFF448SBY.bigWig bigWig (plus strand signal of all reads) 97.6 MB
ENCFF472NIT.bigWig bigWig (minus strand signal of unique reads) 81.4 MB
ENCFF473ZQV.bigWig bigWig (plus strand signal of all reads) 91.4 MB
ENCFF487KJU.bam bam (transcriptome alignments) 8.1 GB
ENCFF499KRC.bam bam (transcriptome alignments) 7.2 GB
ENCFF524ZVY.bigWig bigWig (minus strand signal of unique reads) 76.7 MB
ENCFF530FER.bam bam (alignments) 6.0 GB
ENCFF544JIA.bam bam (alignments) 4.4 GB
ENCFF545RBR.tsv tsv (transcript quantifications) 27.4 MB
ENCFF564YIN.bigWig bigWig (plus strand signal of all reads) 80.5 MB
ENCFF567DBS.bam bam (transcriptome alignments) 6.4 GB
ENCFF572PXD.tar tar (differential splicing quantifications) 16.3 MB
ENCFF587MNS.bigWig bigWig (minus strand signal of unique reads) 86.4 MB
ENCFF601NJD.bam bam (alignments) 5.3 GB
ENCFF608NEN.bigWig bigWig (plus strand signal of unique reads) 80.4 MB
ENCFF608NYQ.bigWig bigWig (plus strand signal of all reads) 96.6 MB
ENCFF609RGX.bigWig bigWig (plus strand signal of all reads) 89.0 MB
ENCFF619PKT.bigWig bigWig (plus strand signal of all reads) 88.3 MB
ENCFF619PXC.bigWig bigWig (minus strand signal of all reads) 80.6 MB
ENCFF620LZR.bigWig bigWig (minus strand signal of unique reads) 81.8 MB
ENCFF624PLF.bigWig bigWig (plus strand signal of all reads) 85.4 MB
ENCFF628PHB.bigWig bigWig (plus strand signal of all reads) 97.6 MB
ENCFF635INU.fastq fastq (reads) 2.9 GB
ENCFF637XJX.fastq fastq (reads) 3.2 GB
ENCFF642ACE.bigWig bigWig (plus strand signal of unique reads) 79.4 MB
ENCFF654JZK.tsv tsv (transcript quantifications) 24.9 MB
ENCFF673QLM.bigWig bigWig (minus strand signal of all reads) 78.8 MB
ENCFF674RJU.tsv tsv (differential expression quantifications) 4.1 MB
ENCFF707TPP.bam bam (transcriptome alignments) 7.3 GB
ENCFF731LBP.bigWig bigWig (minus strand signal of unique reads) 73.1 MB
ENCFF736TDI.bigWig bigWig (minus strand signal of all reads) 95.0 MB
ENCFF738FQC.tsv tsv (gene quantifications) 9.1 MB
ENCFF741FHY.bam bam (alignments) 6.0 GB
ENCFF741XMJ.tsv tsv (differential expression quantifications) 1.8 MB
ENCFF747KEG.tsv tsv (transcript quantifications) 27.4 MB
ENCFF760HEY.bigWig bigWig (minus strand signal of all reads) 83.6 MB
ENCFF797RVC.bigWig bigWig (minus strand signal of unique reads) 77.3 MB
ENCFF799EZD.bigWig bigWig (plus strand signal of all reads) 91.7 MB
ENCFF799PFW.bigWig bigWig (plus strand signal of unique reads) 83.9 MB
ENCFF823NZO.tsv tsv (transcript quantifications) 25.3 MB
ENCFF824WBG.bigWig bigWig (plus strand signal of all reads) 82.1 MB
ENCFF825EMM.bigWig bigWig (minus strand signal of unique reads) 86.2 MB
ENCFF852FQN.bigWig bigWig (plus strand signal of unique reads) 88.6 MB
ENCFF885KXE.bigWig bigWig (minus strand signal of all reads) 95.8 MB
ENCFF902AKA.tar tar (differential splicing quantifications) 4.0 MB
ENCFF905EFQ.tsv tsv (transcript quantifications) 29.8 MB
ENCFF905ZAB.bam bam (alignments) 5.1 GB
ENCFF910XGX.bigWig bigWig (minus strand signal of all reads) 82.0 MB
ENCFF911JXP.bigWig bigWig (plus strand signal of unique reads) 75.2 MB
ENCFF923NAB.bigWig bigWig (minus strand signal of all reads) 90.7 MB
ENCFF931DWI.bam bam (alignments) 5.3 GB
ENCFF959DSB.tsv tsv (transcript quantifications) 24.9 MB
ENCFF959YQS.tsv tsv (gene quantifications) 9.1 MB
ENCFF967RND.bam bam (alignments) 4.5 GB
ENCFF984UYA.tsv tsv (differential expression quantifications) 2.8 MB
ENCFF987NZL.bigWig bigWig (minus strand signal of unique reads) 81.7 MB
ENCSR978CSQ ENCSR · via encode_api

RNA-seq on K562 cells treated with an shRNA knockdown against PKM2. (PKM2_BGKLV21-B)

Homo sapiens

92 data files
FileTypeSize
ENCFF011MHM.tsv tsv (transcript quantifications) 27.4 MB
ENCFF014SHT.tar tar (differential splicing quantifications) 4.0 MB
ENCFF016IEP.bigWig bigWig (minus strand signal of all reads) 111.2 MB
ENCFF030YNP.bam bam (alignments) 4.0 GB
ENCFF038JQV.bigWig bigWig (minus strand signal of unique reads) 93.1 MB
ENCFF050GJL.bigWig bigWig (plus strand signal of unique reads) 100.6 MB
ENCFF053AOT.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF054CBS.bigWig bigWig (plus strand signal of unique reads) 95.6 MB
ENCFF069NCP.bigWig bigWig (minus strand signal of all reads) 100.8 MB
ENCFF073ACR.bigWig bigWig (minus strand signal of all reads) 108.8 MB
ENCFF085ZVA.bam bam (alignments) 3.9 GB
ENCFF091ESF.bam bam (alignments) 3.8 GB
ENCFF097BUP.tar tar (differential splicing quantifications) 4.9 MB
ENCFF097LAL.tsv tsv (differential expression quantifications) 4.3 MB
ENCFF102VJA.tsv tsv (transcript quantifications) 24.9 MB
ENCFF113CYN.bigWig bigWig (plus strand signal of unique reads) 90.8 MB
ENCFF124SVA.fastq fastq (reads) 2.2 GB
ENCFF138WYV.bam bam (alignments) 4.0 GB
ENCFF142MNV.bam bam (alignments) 4.2 GB
ENCFF163MYB.bigWig bigWig (plus strand signal of unique reads) 90.8 MB
ENCFF165BBO.bigWig bigWig (plus strand signal of all reads) 100.7 MB
ENCFF180TVB.bigWig bigWig (plus strand signal of all reads) 93.2 MB
ENCFF182OQD.tsv tsv (differential expression quantifications) 5.5 MB
ENCFF194LOM.bigWig bigWig (minus strand signal of all reads) 91.4 MB
ENCFF223MMV.bigWig bigWig (minus strand signal of unique reads) 81.3 MB
ENCFF230WGW.tsv tsv (transcript quantifications) 25.3 MB
ENCFF233VVK.bigWig bigWig (minus strand signal of all reads) 99.2 MB
ENCFF241KRD.bam bam (alignments) 5.1 GB
ENCFF248VKC.bigWig bigWig (minus strand signal of unique reads) 98.2 MB
ENCFF248XWW.tsv tsv (gene quantifications) 10.4 MB
ENCFF277RBO.bam bam (transcriptome alignments) 6.0 GB
ENCFF280XOA.tsv tsv (gene quantifications) 9.1 MB
ENCFF295HEY.tsv tsv (transcript quantifications) 27.4 MB
ENCFF298DIQ.bigWig bigWig (plus strand signal of unique reads) 85.7 MB
ENCFF301IFR.bigWig bigWig (plus strand signal of all reads) 112.9 MB
ENCFF312CNP.tsv tsv (transcript quantifications) 29.8 MB
ENCFF322AEP.bam bam (alignments) 4.8 GB
ENCFF342JND.bigWig bigWig (plus strand signal of all reads) 90.7 MB
ENCFF355GAZ.bigWig bigWig (plus strand signal of all reads) 102.3 MB
ENCFF398LHL.bigWig bigWig (minus strand signal of unique reads) 83.8 MB
ENCFF403CZS.bam bam (alignments) 3.2 GB
ENCFF405ENH.tar tar (differential splicing quantifications) 17.3 MB
ENCFF408ZNV.bigWig bigWig (plus strand signal of unique reads) 91.8 MB
ENCFF411GFV.tsv tsv (gene quantifications) 9.5 MB
ENCFF416VSC.bam bam (transcriptome alignments) 5.9 GB
ENCFF424ZZQ.bigWig bigWig (minus strand signal of unique reads) 89.2 MB
ENCFF432ERO.bigWig bigWig (plus strand signal of all reads) 103.4 MB
ENCFF437RAJ.bigWig bigWig (plus strand signal of all reads) 102.3 MB
ENCFF445PLM.bigWig bigWig (plus strand signal of all reads) 92.2 MB
ENCFF458XVK.bigWig bigWig (plus strand signal of unique reads) 91.9 MB
ENCFF464CIY.bigWig bigWig (plus strand signal of unique reads) 100.7 MB
ENCFF466OJY.tsv tsv (differential expression quantifications) 2.0 MB
ENCFF471YOK.bam bam (transcriptome alignments) 7.0 GB
ENCFF474RBZ.bigWig bigWig (minus strand signal of all reads) 111.2 MB
ENCFF496FEB.bam bam (transcriptome alignments) 6.1 GB
ENCFF546AQN.bigWig bigWig (minus strand signal of all reads) 101.4 MB
ENCFF552VJT.tsv tsv (gene quantifications) 9.1 MB
ENCFF562MHF.bigWig bigWig (plus strand signal of all reads) 100.2 MB
ENCFF564IWA.bam bam (alignments) 4.2 GB
ENCFF582DYH.bigWig bigWig (minus strand signal of unique reads) 83.7 MB
ENCFF590ODU.bigWig bigWig (minus strand signal of all reads) 88.8 MB
ENCFF603FOE.fastq fastq (reads) 2.3 GB
ENCFF618RMH.bam bam (transcriptome alignments) 5.1 GB
ENCFF627WDO.tsv tsv (transcript quantifications) 29.8 MB
ENCFF635JRA.bigWig bigWig (plus strand signal of all reads) 112.9 MB
ENCFF649UPA.bigWig bigWig (plus strand signal of unique reads) 94.8 MB
ENCFF661ITS.bigWig bigWig (minus strand signal of all reads) 97.7 MB
ENCFF670FLD.bigWig bigWig (plus strand signal of all reads) 99.8 MB
ENCFF701SHT.tsv tsv (differential expression quantifications) 2.8 MB
ENCFF716VZH.bigWig bigWig (minus strand signal of unique reads) 98.0 MB
ENCFF717HPG.tsv tsv (transcript quantifications) 24.9 MB
ENCFF718URA.bigWig bigWig (plus strand signal of unique reads) 86.2 MB
ENCFF733HOC.bigWig bigWig (minus strand signal of unique reads) 98.3 MB
ENCFF739PEU.bigWig bigWig (minus strand signal of unique reads) 88.4 MB
ENCFF757COF.fastq fastq (reads) 2.7 GB
ENCFF767CNG.bigWig bigWig (minus strand signal of unique reads) 89.5 MB
ENCFF794GAV.bigWig bigWig (minus strand signal of unique reads) 92.5 MB
ENCFF799EGC.bigWig bigWig (plus strand signal of unique reads) 83.9 MB
ENCFF801XDO.bam bam (alignments) 3.2 GB
ENCFF819HLX.bigWig bigWig (minus strand signal of all reads) 98.7 MB
ENCFF837PUC.fastq fastq (reads) 2.7 GB
ENCFF842OEK.bigWig bigWig (plus strand signal of all reads) 110.5 MB
ENCFF845MKF.tsv tsv (gene quantifications) 10.4 MB
ENCFF848APS.bam bam (transcriptome alignments) 5.1 GB
ENCFF860JPJ.tsv tsv (gene quantifications) 9.5 MB
ENCFF874PTT.bigWig bigWig (minus strand signal of unique reads) 88.5 MB
ENCFF892HXJ.bigWig bigWig (plus strand signal of unique reads) 100.7 MB
ENCFF918DCP.bam bam (alignments) 3.3 GB
ENCFF921JQF.tsv tsv (transcript quantifications) 25.3 MB
ENCFF928DXR.bigWig bigWig (minus strand signal of all reads) 100.7 MB
ENCFF929WVZ.bam bam (alignments) 5.1 GB
ENCFF937GRR.bigWig bigWig (minus strand signal of all reads) 90.7 MB
ENCSR945GUR ENCSR · via encode_api

RNA-seq on K562 cells treated with an shRNA knockdown against NAA15. (NAA15_BGKLV32)

Homo sapiens

92 data files
FileTypeSize
ENCFF002RHY.bigWig bigWig (minus strand signal of unique reads) 74.0 MB
ENCFF019SCW.bigWig bigWig (minus strand signal of all reads) 75.8 MB
ENCFF040LPT.tsv tsv (differential expression quantifications) 2.0 MB
ENCFF059DRE.bam bam (transcriptome alignments) 5.1 GB
ENCFF073LGG.tar tar (differential splicing quantifications) 15.4 MB
ENCFF079YDG.bigWig bigWig (plus strand signal of unique reads) 72.6 MB
ENCFF088OYQ.bigWig bigWig (plus strand signal of all reads) 82.3 MB
ENCFF088YYA.bam bam (transcriptome alignments) 5.5 GB
ENCFF095HAO.tar tar (differential splicing quantifications) 5.5 MB
ENCFF116RHM.tsv tsv (transcript quantifications) 24.9 MB
ENCFF151PFQ.bam bam (transcriptome alignments) 5.7 GB
ENCFF181PAW.bigWig bigWig (minus strand signal of unique reads) 81.5 MB
ENCFF183ZVF.bam bam (transcriptome alignments) 6.3 GB
ENCFF195CTP.bigWig bigWig (minus strand signal of unique reads) 87.5 MB
ENCFF204USB.tsv tsv (gene quantifications) 9.1 MB
ENCFF207ZTS.tsv tsv (transcript quantifications) 25.3 MB
ENCFF213VPM.bigWig bigWig (plus strand signal of all reads) 90.5 MB
ENCFF222QEE.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF229HHT.bigWig bigWig (plus strand signal of unique reads) 90.1 MB
ENCFF260GKA.bigWig bigWig (minus strand signal of all reads) 83.8 MB
ENCFF273ZHH.bigWig bigWig (plus strand signal of unique reads) 89.8 MB
ENCFF276LYX.bigWig bigWig (minus strand signal of all reads) 97.9 MB
ENCFF285SRR.bigWig bigWig (plus strand signal of unique reads) 81.5 MB
ENCFF300QEJ.bigWig bigWig (plus strand signal of unique reads) 83.6 MB
ENCFF319BQN.tsv tsv (differential expression quantifications) 5.5 MB
ENCFF320LOZ.bam bam (alignments) 4.6 GB
ENCFF322SJC.tsv tsv (transcript quantifications) 27.4 MB
ENCFF323ZWE.bigWig bigWig (minus strand signal of all reads) 89.9 MB
ENCFF328LPO.bigWig bigWig (plus strand signal of unique reads) 89.8 MB
ENCFF337TOV.bam bam (alignments) 3.7 GB
ENCFF360DPY.bigWig bigWig (minus strand signal of unique reads) 81.2 MB
ENCFF378MWJ.bigWig bigWig (minus strand signal of all reads) 79.3 MB
ENCFF385FFE.tsv tsv (gene quantifications) 10.4 MB
ENCFF391DQA.bigWig bigWig (plus strand signal of all reads) 90.1 MB
ENCFF405CXL.bigWig bigWig (plus strand signal of all reads) 77.7 MB
ENCFF412SGY.tsv tsv (gene quantifications) 9.5 MB
ENCFF414BQP.bam bam (alignments) 4.2 GB
ENCFF419RSD.bigWig bigWig (plus strand signal of unique reads) 82.0 MB
ENCFF458OXF.bigWig bigWig (plus strand signal of unique reads) 76.0 MB
ENCFF460WVI.bigWig bigWig (minus strand signal of unique reads) 87.0 MB
ENCFF491MTO.bam bam (alignments) 3.8 GB
ENCFF498EDR.bigWig bigWig (minus strand signal of unique reads) 70.3 MB
ENCFF500JTJ.bam bam (alignments) 4.5 GB
ENCFF501OGZ.tsv tsv (transcript quantifications) 27.4 MB
ENCFF505MYL.bam bam (alignments) 5.1 GB
ENCFF507JVC.bigWig bigWig (plus strand signal of unique reads) 84.2 MB
ENCFF516ZUZ.bam bam (transcriptome alignments) 5.6 GB
ENCFF548OSH.tsv tsv (gene quantifications) 10.4 MB
ENCFF573RSL.bigWig bigWig (minus strand signal of all reads) 87.7 MB
ENCFF578TNR.fastq fastq (reads) 2.7 GB
ENCFF595DRE.bigWig bigWig (plus strand signal of all reads) 80.8 MB
ENCFF629ALJ.bigWig bigWig (minus strand signal of all reads) 86.1 MB
ENCFF648IWK.bigWig bigWig (minus strand signal of unique reads) 73.6 MB
ENCFF666TQK.tsv tsv (transcript quantifications) 29.8 MB
ENCFF672WPN.bigWig bigWig (plus strand signal of all reads) 91.5 MB
ENCFF681YLM.bigWig bigWig (minus strand signal of unique reads) 79.2 MB
ENCFF703KXG.tsv tsv (differential expression quantifications) 2.8 MB
ENCFF710FTJ.fastq fastq (reads) 2.8 GB
ENCFF711XQW.fastq fastq (reads) 2.4 GB
ENCFF723TDY.bigWig bigWig (minus strand signal of all reads) 88.8 MB
ENCFF726FPK.bigWig bigWig (plus strand signal of all reads) 88.0 MB
ENCFF731HBE.bigWig bigWig (minus strand signal of all reads) 80.4 MB
ENCFF732KNR.tar tar (differential splicing quantifications) 4.0 MB
ENCFF750XEH.tsv tsv (differential expression quantifications) 4.4 MB
ENCFF754TRK.bam bam (transcriptome alignments) 5.0 GB
ENCFF765YTC.bigWig bigWig (plus strand signal of unique reads) 75.8 MB
ENCFF779ZPG.bam bam (alignments) 3.7 GB
ENCFF781LCV.bam bam (alignments) 5.3 GB
ENCFF786YQS.bam bam (alignments) 4.3 GB
ENCFF796GSF.bigWig bigWig (minus strand signal of all reads) 89.9 MB
ENCFF796NFH.tsv tsv (gene quantifications) 9.1 MB
ENCFF796PKQ.bigWig bigWig (minus strand signal of unique reads) 79.8 MB
ENCFF802BTD.tsv tsv (gene quantifications) 9.4 MB
ENCFF809IUY.bigWig bigWig (plus strand signal of unique reads) 79.8 MB
ENCFF817QBN.bam bam (alignments) 5.3 GB
ENCFF836CJL.bigWig bigWig (plus strand signal of all reads) 99.9 MB
ENCFF854JOI.tsv tsv (transcript quantifications) 29.8 MB
ENCFF864RLC.tsv tsv (transcript quantifications) 24.9 MB
ENCFF867IAS.bam bam (alignments) 4.2 GB
ENCFF880DUW.bigWig bigWig (minus strand signal of all reads) 97.2 MB
ENCFF880JZX.bigWig bigWig (plus strand signal of all reads) 91.5 MB
ENCFF891ZZL.bigWig bigWig (plus strand signal of all reads) 99.9 MB
ENCFF907TIG.bigWig bigWig (minus strand signal of unique reads) 87.2 MB
ENCFF911IKC.bigWig bigWig (minus strand signal of unique reads) 77.1 MB
ENCFF912PDR.bigWig bigWig (plus strand signal of all reads) 99.3 MB
ENCFF915BFT.tsv tsv (transcript quantifications) 25.3 MB
ENCFF931KQH.bigWig bigWig (minus strand signal of unique reads) 79.8 MB
ENCFF963XCZ.bigWig bigWig (plus strand signal of unique reads) 82.0 MB
ENCFF972UBG.bigWig bigWig (plus strand signal of all reads) 86.1 MB
ENCFF973UHT.bam bam (alignments) 4.6 GB
ENCFF980VWN.bigWig bigWig (minus strand signal of all reads) 97.8 MB
ENCFF998UXZ.fastq fastq (reads) 2.5 GB
ENCSR941GJG ENCSR · via encode_api

eCLIP control experiment on HepG2 against U2AF1

Homo sapiens

8 data files
FileTypeSize
ENCFF036XAD.fastq fastq (reads) 453.6 MB
ENCFF076WAG.bam bam (alignments) 292.9 MB
ENCFF189CPD.fastq fastq (reads) 436.9 MB
ENCFF241MHK.bigWig bigWig (minus strand signal of unique reads) 14.4 MB
ENCFF390LHZ.bigWig bigWig (minus strand signal of unique reads) 14.5 MB
ENCFF553PCH.bigWig bigWig (plus strand signal of unique reads) 15.0 MB
ENCFF664JCF.bigWig bigWig (plus strand signal of unique reads) 14.7 MB
ENCFF753HXO.bam bam (alignments) 290.9 MB
ENCSR306IOF ENCSR · via encode_api

RNA-seq on K562 cells treated with an shRNA knockdown against PARN. (PARN_BGKLV24)

Homo sapiens

92 data files
FileTypeSize
ENCFF004EEG.bigWig bigWig (minus strand signal of unique reads) 54.5 MB
ENCFF016TJD.bigWig bigWig (minus strand signal of unique reads) 48.8 MB
ENCFF031XPU.bam bam (transcriptome alignments) 3.7 GB
ENCFF042UWM.tar tar (differential splicing quantifications) 12.5 MB
ENCFF052RJW.bam bam (alignments) 2.6 GB
ENCFF053NVE.tsv tsv (differential expression quantifications) 5.4 MB
ENCFF055XCL.bigWig bigWig (plus strand signal of unique reads) 56.4 MB
ENCFF057PVA.tsv tsv (transcript quantifications) 24.9 MB
ENCFF063XTF.bigWig bigWig (plus strand signal of all reads) 63.5 MB
ENCFF079TFP.bigWig bigWig (minus strand signal of all reads) 64.0 MB
ENCFF107FAQ.bigWig bigWig (minus strand signal of all reads) 56.5 MB
ENCFF109VTT.bigWig bigWig (plus strand signal of all reads) 63.6 MB
ENCFF109XER.fastq fastq (reads) 1.4 GB
ENCFF119WIY.tsv tsv (transcript quantifications) 27.2 MB
ENCFF124VMQ.bigWig bigWig (minus strand signal of unique reads) 53.6 MB
ENCFF129IJC.bam bam (alignments) 2.6 GB
ENCFF140EWE.tsv tsv (gene quantifications) 10.4 MB
ENCFF157XYW.fastq fastq (reads) 1.5 GB
ENCFF164IRE.bigWig bigWig (minus strand signal of unique reads) 55.0 MB
ENCFF188DIF.bigWig bigWig (plus strand signal of unique reads) 52.6 MB
ENCFF189EHW.bigWig bigWig (plus strand signal of unique reads) 54.8 MB
ENCFF197NPO.bigWig bigWig (plus strand signal of all reads) 59.0 MB
ENCFF201VOO.bigWig bigWig (plus strand signal of unique reads) 58.6 MB
ENCFF209USC.bigWig bigWig (plus strand signal of unique reads) 58.0 MB
ENCFF225VXU.bigWig bigWig (minus strand signal of all reads) 62.8 MB
ENCFF277SFL.bigWig bigWig (minus strand signal of all reads) 53.0 MB
ENCFF285GIM.bigWig bigWig (minus strand signal of unique reads) 50.6 MB
ENCFF296WFQ.tsv tsv (transcript quantifications) 27.2 MB
ENCFF306XIN.bigWig bigWig (plus strand signal of unique reads) 50.2 MB
ENCFF311XME.bam bam (alignments) 2.7 GB
ENCFF336IKA.bigWig bigWig (minus strand signal of unique reads) 51.6 MB
ENCFF342JKH.bam bam (transcriptome alignments) 3.1 GB
ENCFF348BGJ.tsv tsv (transcript quantifications) 25.3 MB
ENCFF359PVE.bigWig bigWig (minus strand signal of all reads) 62.8 MB
ENCFF361KNC.bam bam (alignments) 2.6 GB
ENCFF380RSW.tar tar (differential splicing quantifications) 3.1 MB
ENCFF397FJF.bigWig bigWig (plus strand signal of all reads) 56.9 MB
ENCFF402WLJ.bigWig bigWig (plus strand signal of all reads) 56.4 MB
ENCFF406EGV.tsv tsv (transcript quantifications) 25.3 MB
ENCFF408PKL.tsv tsv (differential expression quantifications) 4.0 MB
ENCFF428NGS.bigWig bigWig (minus strand signal of unique reads) 56.4 MB
ENCFF429MTL.bam bam (alignments) 2.2 GB
ENCFF464NFK.bigWig bigWig (plus strand signal of all reads) 65.0 MB
ENCFF470HZG.bigWig bigWig (plus strand signal of all reads) 59.9 MB
ENCFF496IWW.bigWig bigWig (minus strand signal of all reads) 58.8 MB
ENCFF502WYG.bam bam (transcriptome alignments) 3.1 GB
ENCFF503OPH.bam bam (alignments) 3.2 GB
ENCFF528LWY.bigWig bigWig (minus strand signal of unique reads) 57.2 MB
ENCFF530RYF.tsv tsv (gene quantifications) 9.1 MB
ENCFF558PAA.bam bam (alignments) 2.2 GB
ENCFF565EIF.bam bam (transcriptome alignments) 3.5 GB
ENCFF566IRK.tsv tsv (gene quantifications) 9.1 MB
ENCFF571XEY.bigWig bigWig (plus strand signal of unique reads) 55.7 MB
ENCFF576HAR.bam bam (transcriptome alignments) 4.1 GB
ENCFF576WGH.bam bam (alignments) 2.2 GB
ENCFF622IHD.bam bam (alignments) 3.1 GB
ENCFF625FQO.bigWig bigWig (plus strand signal of all reads) 65.9 MB
ENCFF647XED.tar tar (differential splicing quantifications) 2.9 MB
ENCFF649GCE.tsv tsv (gene quantifications) 9.4 MB
ENCFF650GOL.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF674TKB.bigWig bigWig (plus strand signal of unique reads) 53.8 MB
ENCFF682VIY.bigWig bigWig (minus strand signal of all reads) 65.0 MB
ENCFF688LGW.bigWig bigWig (minus strand signal of unique reads) 54.0 MB
ENCFF710JHO.bigWig bigWig (plus strand signal of all reads) 65.9 MB
ENCFF727TYL.bigWig bigWig (minus strand signal of unique reads) 52.4 MB
ENCFF729KQU.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF730MOB.bigWig bigWig (minus strand signal of all reads) 61.8 MB
ENCFF746IQK.fastq fastq (reads) 1.8 GB
ENCFF764UKF.bigWig bigWig (minus strand signal of all reads) 58.2 MB
ENCFF785CLF.tsv tsv (gene quantifications) 9.4 MB
ENCFF796JSX.bam bam (alignments) 3.2 GB
ENCFF796SER.bigWig bigWig (minus strand signal of all reads) 55.3 MB
ENCFF812XLO.fastq fastq (reads) 1.6 GB
ENCFF834CIB.bigWig bigWig (plus strand signal of unique reads) 58.2 MB
ENCFF847CVN.tsv tsv (transcript quantifications) 29.8 MB
ENCFF857VZI.bam bam (transcriptome alignments) 3.7 GB
ENCFF864IYM.bigWig bigWig (minus strand signal of all reads) 56.2 MB
ENCFF879TWK.bigWig bigWig (plus strand signal of unique reads) 56.4 MB
ENCFF902LOK.tsv tsv (transcript quantifications) 29.8 MB
ENCFF902PBY.bigWig bigWig (plus strand signal of all reads) 54.0 MB
ENCFF920RLX.bam bam (alignments) 2.7 GB
ENCFF926IFC.bigWig bigWig (minus strand signal of all reads) 65.0 MB
ENCFF928LTD.bigWig bigWig (plus strand signal of unique reads) 52.1 MB
ENCFF946DDK.bigWig bigWig (plus strand signal of all reads) 62.6 MB
ENCFF964WVI.tsv tsv (transcript quantifications) 24.8 MB
ENCFF970YYC.bigWig bigWig (plus strand signal of unique reads) 55.4 MB
ENCFF974AKX.bigWig bigWig (plus strand signal of all reads) 57.4 MB
ENCFF978DHM.tsv tsv (differential expression quantifications) 2.7 MB
ENCFF985MUG.bigWig bigWig (minus strand signal of unique reads) 56.8 MB
ENCFF992NVL.bam bam (alignments) 2.6 GB
ENCFF996IEU.tsv tsv (gene quantifications) 10.4 MB
ENCFF998LYF.bigWig bigWig (minus strand signal of unique reads) 55.2 MB
ENCSR655BRZ ENCSR · via encode_api

eCLIP control experiment on HepG2 against BCCIP

Homo sapiens

8 data files
FileTypeSize
ENCFF216CAI.bigWig bigWig (minus strand signal of unique reads) 5.7 MB
ENCFF371GVL.fastq fastq (reads) 313.5 MB
ENCFF421BZA.bam bam (alignments) 115.0 MB
ENCFF487PQZ.bam bam (alignments) 116.5 MB
ENCFF500SVA.bigWig bigWig (plus strand signal of unique reads) 5.8 MB
ENCFF636XDP.bigWig bigWig (minus strand signal of unique reads) 5.6 MB
ENCFF945LNO.bigWig bigWig (plus strand signal of unique reads) 5.9 MB
ENCFF996LKZ.fastq fastq (reads) 326.0 MB
ENCSR992JGE ENCSR · via encode_api

shRNA knockdown against METAP2 in HepG2 cells followed by RNA-seq. (METAP2_BGHLV16)

Homo sapiens

120 data files
FileTypeSize
ENCFF003USJ.tsv tsv (gene quantifications) 10.4 MB
ENCFF005PYY.tsv tsv (differential expression quantifications) 4.2 MB
ENCFF009CAI.bigWig bigWig (minus strand signal of all reads) 44.5 MB
ENCFF017FWB.tsv tsv (transcript quantifications) 29.8 MB
ENCFF019DII.bigWig bigWig (plus strand signal of all reads) 91.3 MB
ENCFF024GEM.bigWig bigWig (minus strand signal of unique reads) 91.4 MB
ENCFF027VYC.bam bam (alignments) 6.6 GB
ENCFF047GWP.bigWig bigWig (plus strand signal of all reads) 39.5 MB
ENCFF057REB.bigWig bigWig (plus strand signal of unique reads) 97.4 MB
ENCFF057TVG.bigWig bigWig (plus strand signal of all reads) 108.3 MB
ENCFF064AXI.bigWig bigWig (minus strand signal of all reads) 97.0 MB
ENCFF064OKZ.bigWig bigWig (minus strand signal of unique reads) 88.6 MB
ENCFF079BRQ.bigWig bigWig (plus strand signal of unique reads) 94.0 MB
ENCFF085TZL.bigWig bigWig (minus strand signal of unique reads) 85.7 MB
ENCFF086WEK.tar tar (differential splicing quantifications) 13.3 MB
ENCFF090FZR.bigWig bigWig (minus strand signal of unique reads) 40.4 MB
ENCFF095WYC.bam bam (alignments) 1.0 GB
ENCFF099GRI.bam bam (alignments) 3.2 GB
ENCFF100LTU.bigWig bigWig (minus strand signal of unique reads) 36.6 MB
ENCFF103ZLT.bigWig bigWig (minus strand signal of all reads) 107.4 MB
ENCFF105SGU.bigWig bigWig (plus strand signal of unique reads) 94.0 MB
ENCFF132EJC.bigWig bigWig (plus strand signal of unique reads) 98.2 MB
ENCFF136SCL.tsv tsv (transcript quantifications) 24.9 MB
ENCFF138SMJ.bam bam (transcriptome alignments) 8.5 GB
ENCFF142QDM.bigWig bigWig (minus strand signal of all reads) 100.4 MB
ENCFF145NEH.bigWig bigWig (plus strand signal of all reads) 20.4 MB
ENCFF160EEX.bigWig bigWig (plus strand signal of unique reads) 19.0 MB
ENCFF172BYQ.bigWig bigWig (plus strand signal of all reads) 109.3 MB
ENCFF174VBY.tsv tsv (transcript quantifications) 29.8 MB
ENCFF180HPV.bigWig bigWig (minus strand signal of unique reads) 94.9 MB
ENCFF191YBX.bigWig bigWig (minus strand signal of unique reads) 86.8 MB
ENCFF199RTK.bigWig bigWig (plus strand signal of unique reads) 86.1 MB
ENCFF210PZH.bam bam (alignments) 8.2 GB
ENCFF218QBS.bigWig bigWig (minus strand signal of unique reads) 95.6 MB
ENCFF233MAH.bam bam (transcriptome alignments) 4.7 GB
ENCFF249SPU.bigWig bigWig (plus strand signal of unique reads) 41.6 MB
ENCFF249ZQO.bam bam (alignments) 3.4 GB
ENCFF261IUT.bam bam (alignments) 2.9 GB
ENCFF276LQJ.bam bam (alignments) 5.4 GB
ENCFF306GWQ.bigWig bigWig (plus strand signal of all reads) 102.4 MB
ENCFF307VUX.tsv tsv (gene quantifications) 9.1 MB
ENCFF308JQW.bigWig bigWig (plus strand signal of unique reads) 90.9 MB
ENCFF313CRG.bigWig bigWig (plus strand signal of all reads) 96.6 MB
ENCFF313FAQ.bigWig bigWig (minus strand signal of all reads) 100.5 MB
ENCFF315MQJ.bigWig bigWig (minus strand signal of unique reads) 40.5 MB
ENCFF317JZW.tsv tsv (differential expression quantifications) 1.8 MB
ENCFF335MVU.bigWig bigWig (minus strand signal of all reads) 106.6 MB
ENCFF338PPV.tsv tsv (gene quantifications) 9.5 MB
ENCFF340EFN.bigWig bigWig (plus strand signal of all reads) 102.6 MB
ENCFF341QIE.tsv tsv (gene quantifications) 10.4 MB
ENCFF350WJW.bam bam (alignments) 6.6 GB
ENCFF352ZIK.tsv tsv (gene quantifications) 9.1 MB
ENCFF356VAH.bigWig bigWig (plus strand signal of all reads) 45.9 MB
ENCFF379VZE.bam bam (transcriptome alignments) 9.7 GB
ENCFF382ZTY.bigWig bigWig (minus strand signal of all reads) 44.8 MB
ENCFF383DSE.fastq fastq (reads) 3.7 GB
ENCFF385SHU.bigWig bigWig (plus strand signal of all reads) 45.4 MB
ENCFF404HVV.bigWig bigWig (minus strand signal of unique reads) 18.5 MB
ENCFF409OLU.bigWig bigWig (minus strand signal of all reads) 94.7 MB
ENCFF411JUJ.bam bam (alignments) 6.6 GB
ENCFF423EUN.tsv tsv (transcript quantifications) 27.2 MB
ENCFF430TDG.tsv tsv (transcript quantifications) 27.4 MB
ENCFF434JBP.bigWig bigWig (plus strand signal of all reads) 45.9 MB
ENCFF446BYV.bigWig bigWig (minus strand signal of all reads) 19.8 MB
ENCFF448DNR.tsv tsv (gene quantifications) 9.1 MB
ENCFF466WMP.bam bam (transcriptome alignments) 9.4 GB
ENCFF467HYU.bigWig bigWig (plus strand signal of all reads) 99.0 MB
ENCFF483PVZ.bigWig bigWig (plus strand signal of unique reads) 41.6 MB
ENCFF485ZGX.fastq fastq (reads) 3.8 GB
ENCFF499ITZ.fastq fastq (reads) 1.3 GB
ENCFF500PKM.bigWig bigWig (plus strand signal of all reads) 102.5 MB
ENCFF521TMV.bigWig bigWig (plus strand signal of unique reads) 89.3 MB
ENCFF525CDN.tar tar (differential splicing quantifications) 3.6 MB
ENCFF528RSZ.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF542RGK.bigWig bigWig (plus strand signal of all reads) 40.5 MB
ENCFF546CMU.bigWig bigWig (plus strand signal of unique reads) 37.5 MB
ENCFF550HER.tsv tsv (transcript quantifications) 24.9 MB
ENCFF553WDY.fastq fastq (reads) 660.5 MB
ENCFF570ENS.bigWig bigWig (minus strand signal of all reads) 91.6 MB
ENCFF576KFF.bam bam (alignments) 6.8 GB
ENCFF587SPQ.bigWig bigWig (minus strand signal of unique reads) 90.2 MB
ENCFF590HQE.bam bam (transcriptome alignments) 4.2 GB
ENCFF615GWI.bigWig bigWig (plus strand signal of unique reads) 88.0 MB
ENCFF619KWP.bam bam (alignments) 6.5 GB
ENCFF655JHF.bigWig bigWig (plus strand signal of all reads) 94.4 MB
ENCFF655KPQ.tsv tsv (transcript quantifications) 25.3 MB
ENCFF656YJQ.bigWig bigWig (plus strand signal of unique reads) 37.9 MB
ENCFF669COR.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF672RCN.bam bam (alignments) 7.8 GB
ENCFF682JKD.bam bam (alignments) 5.4 GB
ENCFF685KDJ.bam bam (alignments) 5.5 GB
ENCFF695HEY.tsv tsv (transcript quantifications) 25.3 MB
ENCFF698SVW.bam bam (transcriptome alignments) 9.5 GB
ENCFF700BBI.tsv tsv (gene quantifications) 9.4 MB
ENCFF702GPI.bigWig bigWig (plus strand signal of unique reads) 94.0 MB
ENCFF721IPD.fastq fastq (reads) 747.1 MB
ENCFF723VPR.bigWig bigWig (plus strand signal of unique reads) 41.6 MB
ENCFF725JND.bigWig bigWig (minus strand signal of unique reads) 36.9 MB
ENCFF730JXL.bigWig bigWig (plus strand signal of all reads) 93.4 MB
ENCFF757FUS.bigWig bigWig (minus strand signal of unique reads) 40.5 MB
ENCFF760ULC.bigWig bigWig (minus strand signal of unique reads) 91.3 MB
ENCFF764LGP.tsv tsv (gene quantifications) 9.5 MB
ENCFF783QRI.bigWig bigWig (minus strand signal of all reads) 44.8 MB
ENCFF800PIL.bigWig bigWig (minus strand signal of all reads) 89.2 MB
ENCFF814XZP.tsv tsv (transcript quantifications) 24.9 MB
ENCFF819TDF.tar tar (differential splicing quantifications) 3.2 MB
ENCFF855KOH.bam bam (transcriptome alignments) 8.6 GB
ENCFF857IYO.bigWig bigWig (minus strand signal of all reads) 100.7 MB
ENCFF872FIO.bigWig bigWig (minus strand signal of all reads) 92.3 MB
ENCFF876QNA.fastq fastq (reads) 1.3 GB
ENCFF896KBG.bigWig bigWig (minus strand signal of all reads) 39.6 MB
ENCFF902TQC.bam bam (alignments) 3.9 GB
ENCFF919RTN.bigWig bigWig (plus strand signal of unique reads) 92.8 MB
ENCFF926NCM.bigWig bigWig (minus strand signal of unique reads) 83.4 MB
ENCFF948PWD.bigWig bigWig (minus strand signal of unique reads) 91.4 MB
ENCFF965AWQ.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF965HYP.bigWig bigWig (minus strand signal of all reads) 38.7 MB
ENCFF984WOK.bam bam (alignments) 3.9 GB
ENCFF990EBM.bam bam (transcriptome alignments) 4.1 GB
ENCFF997NCS.tsv tsv (transcript quantifications) 25.3 MB
ENCSR530BOP ENCSR · via encode_api

RNA-seq on K562 cells treated with an shRNA knockdown against SUPT6H. (SUPT6H_BGKLV28)

Homo sapiens

92 data files
FileTypeSize
ENCFF004BYU.bigWig bigWig (plus strand signal of all reads) 132.0 MB
ENCFF025ETD.bam bam (transcriptome alignments) 10.0 GB
ENCFF026IDF.fastq fastq (reads) 3.8 GB
ENCFF037RXE.tsv tsv (transcript quantifications) 29.9 MB
ENCFF070ZMS.bigWig bigWig (minus strand signal of all reads) 110.0 MB
ENCFF091NLB.bigWig bigWig (minus strand signal of all reads) 96.4 MB
ENCFF103NUJ.bam bam (transcriptome alignments) 11.3 GB
ENCFF109PBG.bam bam (alignments) 5.9 GB
ENCFF110KYF.bigWig bigWig (plus strand signal of unique reads) 98.2 MB
ENCFF122JQH.bigWig bigWig (plus strand signal of unique reads) 98.7 MB
ENCFF138CKL.bigWig bigWig (minus strand signal of unique reads) 84.5 MB
ENCFF138NLF.bigWig bigWig (minus strand signal of unique reads) 87.7 MB
ENCFF144XOM.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF159RWI.bam bam (alignments) 10.0 GB
ENCFF169RDJ.bam bam (transcriptome alignments) 7.7 GB
ENCFF211VLH.bam bam (alignments) 7.2 GB
ENCFF220DBV.bigWig bigWig (minus strand signal of all reads) 91.4 MB
ENCFF233TBQ.bigWig bigWig (plus strand signal of unique reads) 107.2 MB
ENCFF249QQG.tsv tsv (gene quantifications) 9.5 MB
ENCFF258TYW.bigWig bigWig (minus strand signal of unique reads) 101.3 MB
ENCFF273URB.bam bam (alignments) 9.4 GB
ENCFF275KOI.tsv tsv (gene quantifications) 9.1 MB
ENCFF291XJP.bigWig bigWig (minus strand signal of all reads) 114.3 MB
ENCFF293MYW.bam bam (alignments) 7.8 GB
ENCFF306ODH.bigWig bigWig (plus strand signal of unique reads) 104.7 MB
ENCFF318WCE.bam bam (alignments) 5.9 GB
ENCFF340BSB.bigWig bigWig (minus strand signal of all reads) 93.5 MB
ENCFF347DEF.tsv tsv (gene quantifications) 10.4 MB
ENCFF362OUH.bigWig bigWig (plus strand signal of all reads) 112.8 MB
ENCFF373KOQ.bigWig bigWig (plus strand signal of unique reads) 118.2 MB
ENCFF378LDV.tar tar (differential splicing quantifications) 5.1 MB
ENCFF388ZQG.bigWig bigWig (minus strand signal of unique reads) 95.8 MB
ENCFF390AWE.bigWig bigWig (plus strand signal of all reads) 110.8 MB
ENCFF402EUW.bigWig bigWig (plus strand signal of all reads) 95.0 MB
ENCFF409QGY.bam bam (transcriptome alignments) 8.7 GB
ENCFF425EJB.bigWig bigWig (plus strand signal of all reads) 108.7 MB
ENCFF462MFI.bigWig bigWig (plus strand signal of unique reads) 98.7 MB
ENCFF464GRT.bigWig bigWig (plus strand signal of unique reads) 89.8 MB
ENCFF464WYD.bigWig bigWig (plus strand signal of all reads) 98.4 MB
ENCFF471JFC.bam bam (alignments) 7.0 GB
ENCFF475TMD.tar tar (differential splicing quantifications) 16.5 MB
ENCFF482BSN.bigWig bigWig (minus strand signal of all reads) 109.2 MB
ENCFF483TUD.bigWig bigWig (minus strand signal of all reads) 111.9 MB
ENCFF500YXL.bam bam (transcriptome alignments) 10.1 GB
ENCFF521FEX.fastq fastq (reads) 5.2 GB
ENCFF559AKI.tsv tsv (transcript quantifications) 25.4 MB
ENCFF560CCF.bigWig bigWig (minus strand signal of unique reads) 115.0 MB
ENCFF577QHB.tsv tsv (transcript quantifications) 24.9 MB
ENCFF584MIP.bigWig bigWig (plus strand signal of unique reads) 108.5 MB
ENCFF638JRN.bigWig bigWig (minus strand signal of unique reads) 104.4 MB
ENCFF642MZZ.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF642QBH.bigWig bigWig (minus strand signal of unique reads) 96.0 MB
ENCFF649KZO.bam bam (alignments) 7.8 GB
ENCFF669FUS.bigWig bigWig (minus strand signal of unique reads) 114.6 MB
ENCFF671PNR.bigWig bigWig (plus strand signal of unique reads) 87.1 MB
ENCFF682ZXR.bam bam (alignments) 7.2 GB
ENCFF695NZB.bigWig bigWig (plus strand signal of all reads) 132.0 MB
ENCFF711ZKT.tsv tsv (transcript quantifications) 27.4 MB
ENCFF737KYO.bigWig bigWig (minus strand signal of all reads) 129.6 MB
ENCFF745WZG.tsv tsv (gene quantifications) 10.4 MB
ENCFF759KOF.bigWig bigWig (plus strand signal of unique reads) 118.2 MB
ENCFF771IVI.tsv tsv (gene quantifications) 9.1 MB
ENCFF777KXY.tsv tsv (transcript quantifications) 25.4 MB
ENCFF802SGM.bigWig bigWig (plus strand signal of all reads) 131.1 MB
ENCFF809QVD.bigWig bigWig (plus strand signal of unique reads) 118.1 MB
ENCFF810CQZ.bam bam (alignments) 10.0 GB
ENCFF810WCM.tsv tsv (transcript quantifications) 27.5 MB
ENCFF835XWP.bigWig bigWig (minus strand signal of unique reads) 87.5 MB
ENCFF841PVQ.bigWig bigWig (minus strand signal of all reads) 109.2 MB
ENCFF845SII.bigWig bigWig (plus strand signal of all reads) 93.5 MB
ENCFF845WPE.tsv tsv (differential expression quantifications) 4.4 MB
ENCFF856DIY.bigWig bigWig (plus strand signal of unique reads) 90.0 MB
ENCFF856ODA.bigWig bigWig (minus strand signal of all reads) 129.6 MB
ENCFF856QBY.tsv tsv (gene quantifications) 9.5 MB
ENCFF875ASA.bigWig bigWig (minus strand signal of all reads) 128.6 MB
ENCFF877NWX.tsv tsv (transcript quantifications) 29.9 MB
ENCFF882NHW.bigWig bigWig (minus strand signal of unique reads) 114.9 MB
ENCFF888AEH.tar tar (differential splicing quantifications) 4.0 MB
ENCFF889YRK.bam bam (transcriptome alignments) 7.7 GB
ENCFF899HMI.bigWig bigWig (plus strand signal of all reads) 114.1 MB
ENCFF912NWF.fastq fastq (reads) 3.8 GB
ENCFF913QCL.tsv tsv (differential expression quantifications) 2.0 MB
ENCFF924KFM.bigWig bigWig (plus strand signal of all reads) 110.8 MB
ENCFF934NHF.bam bam (alignments) 6.0 GB
ENCFF941MIH.bigWig bigWig (minus strand signal of all reads) 107.0 MB
ENCFF943GON.fastq fastq (reads) 5.1 GB
ENCFF948YIX.bigWig bigWig (minus strand signal of unique reads) 96.3 MB
ENCFF955IDK.bigWig bigWig (plus strand signal of all reads) 117.1 MB
ENCFF957GDU.bam bam (alignments) 8.2 GB
ENCFF968CMZ.bigWig bigWig (minus strand signal of unique reads) 105.2 MB
ENCFF982DLL.tsv tsv (transcript quantifications) 25.0 MB
ENCFF991XZU.tsv tsv (differential expression quantifications) 1.7 MB
ENCSR258VGD ENCSR · via encode_api

RNA-seq on K562 cells treated with an shRNA knockdown against EIF3A. (EIF3A_BGKLV24)

Homo sapiens

92 data files
FileTypeSize
ENCFF018IPL.fastq fastq (reads) 1.6 GB
ENCFF018KOA.fastq fastq (reads) 1.7 GB
ENCFF025RUS.tsv tsv (transcript quantifications) 27.1 MB
ENCFF033HPO.bigWig bigWig (minus strand signal of unique reads) 35.4 MB
ENCFF039DYL.bigWig bigWig (plus strand signal of unique reads) 58.3 MB
ENCFF053RZP.bam bam (alignments) 2.5 GB
ENCFF059VXG.tar tar (differential splicing quantifications) 12.1 MB
ENCFF062IOE.bigWig bigWig (minus strand signal of unique reads) 35.4 MB
ENCFF064DSL.bigWig bigWig (minus strand signal of unique reads) 58.0 MB
ENCFF066CVH.bigWig bigWig (plus strand signal of all reads) 67.0 MB
ENCFF071DKA.tar tar (differential splicing quantifications) 2.9 MB
ENCFF071RBD.bigWig bigWig (plus strand signal of unique reads) 53.5 MB
ENCFF076WHG.bam bam (alignments) 2.0 GB
ENCFF089NJZ.bam bam (alignments) 2.5 GB
ENCFF102UDW.bigWig bigWig (plus strand signal of all reads) 57.7 MB
ENCFF104IGM.bam bam (transcriptome alignments) 2.9 GB
ENCFF129TGO.bigWig bigWig (minus strand signal of all reads) 33.9 MB
ENCFF140HYG.bigWig bigWig (plus strand signal of unique reads) 33.9 MB
ENCFF158TJL.bam bam (alignments) 2.4 GB
ENCFF171OAW.tsv tsv (gene quantifications) 9.4 MB
ENCFF175DWQ.bigWig bigWig (minus strand signal of unique reads) 31.0 MB
ENCFF181KQL.bigWig bigWig (plus strand signal of all reads) 36.8 MB
ENCFF199HSJ.bigWig bigWig (minus strand signal of all reads) 66.1 MB
ENCFF215YGB.bam bam (transcriptome alignments) 3.6 GB
ENCFF221XNG.bigWig bigWig (plus strand signal of unique reads) 58.9 MB
ENCFF255RCC.bigWig bigWig (minus strand signal of all reads) 40.5 MB
ENCFF272SNX.fastq fastq (reads) 1.3 GB
ENCFF279MTT.tsv tsv (transcript quantifications) 24.9 MB
ENCFF281IJO.bigWig bigWig (minus strand signal of all reads) 65.2 MB
ENCFF342QAI.tsv tsv (gene quantifications) 10.4 MB
ENCFF347ZTI.tsv tsv (gene quantifications) 9.1 MB
ENCFF356SUU.bigWig bigWig (plus strand signal of all reads) 40.9 MB
ENCFF358OLD.bigWig bigWig (plus strand signal of all reads) 61.4 MB
ENCFF362XII.bigWig bigWig (plus strand signal of all reads) 41.2 MB
ENCFF374CHQ.bigWig bigWig (minus strand signal of all reads) 40.5 MB
ENCFF381WFG.tsv tsv (transcript quantifications) 27.2 MB
ENCFF385ENL.tsv tsv (differential expression quantifications) 4.2 MB
ENCFF390OBH.tsv tsv (transcript quantifications) 24.9 MB
ENCFF404MIH.tsv tsv (differential expression quantifications) 5.5 MB
ENCFF410NPF.bigWig bigWig (minus strand signal of all reads) 40.3 MB
ENCFF413XMK.bigWig bigWig (minus strand signal of unique reads) 33.1 MB
ENCFF415RTI.bigWig bigWig (plus strand signal of unique reads) 36.1 MB
ENCFF424QYV.bam bam (transcriptome alignments) 2.9 GB
ENCFF431STZ.bigWig bigWig (minus strand signal of unique reads) 35.4 MB
ENCFF446DWZ.bam bam (alignments) 2.4 GB
ENCFF451CVB.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF469ZYG.bigWig bigWig (minus strand signal of all reads) 58.9 MB
ENCFF484PDC.bigWig bigWig (plus strand signal of all reads) 59.7 MB
ENCFF488HEY.fastq fastq (reads) 1.4 GB
ENCFF493PQM.bigWig bigWig (plus strand signal of unique reads) 55.3 MB
ENCFF499WFL.bigWig bigWig (plus strand signal of all reads) 66.1 MB
ENCFF502DAP.bam bam (transcriptome alignments) 3.6 GB
ENCFF507FWO.tsv tsv (gene quantifications) 9.1 MB
ENCFF521GHE.bigWig bigWig (plus strand signal of all reads) 35.7 MB
ENCFF523PEQ.bigWig bigWig (minus strand signal of all reads) 36.2 MB
ENCFF553UQH.tsv tsv (gene quantifications) 9.4 MB
ENCFF582LIN.bigWig bigWig (plus strand signal of unique reads) 31.9 MB
ENCFF582TVZ.bigWig bigWig (plus strand signal of unique reads) 36.2 MB
ENCFF584MVZ.bigWig bigWig (plus strand signal of unique reads) 33.6 MB
ENCFF587LCQ.bam bam (alignments) 2.0 GB
ENCFF626SKJ.bigWig bigWig (minus strand signal of all reads) 66.0 MB
ENCFF657VUW.bigWig bigWig (plus strand signal of all reads) 34.6 MB
ENCFF665EUP.tar tar (differential splicing quantifications) 3.2 MB
ENCFF674ZNH.tsv tsv (gene quantifications) 10.4 MB
ENCFF687RNI.bam bam (alignments) 2.0 GB
ENCFF689CQB.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF735EJF.tsv tsv (transcript quantifications) 29.8 MB
ENCFF739PKO.tsv tsv (transcript quantifications) 29.8 MB
ENCFF739QAF.tsv tsv (differential expression quantifications) 1.8 MB
ENCFF747OGX.bigWig bigWig (minus strand signal of unique reads) 54.5 MB
ENCFF759RHR.tsv tsv (transcript quantifications) 25.3 MB
ENCFF771VDT.bigWig bigWig (plus strand signal of unique reads) 55.9 MB
ENCFF779UAH.bigWig bigWig (minus strand signal of all reads) 35.1 MB
ENCFF781YZS.bigWig bigWig (plus strand signal of all reads) 41.2 MB
ENCFF799UVY.bigWig bigWig (minus strand signal of unique reads) 52.0 MB
ENCFF811SQN.bam bam (alignments) 2.5 GB
ENCFF819EVZ.bam bam (alignments) 3.0 GB
ENCFF830FCO.bam bam (alignments) 3.0 GB
ENCFF849DND.bigWig bigWig (plus strand signal of unique reads) 36.2 MB
ENCFF861NSL.bam bam (alignments) 3.0 GB
ENCFF863FIM.bam bam (alignments) 2.3 GB
ENCFF902ZLY.bigWig bigWig (minus strand signal of unique reads) 33.0 MB
ENCFF907JHD.tsv tsv (transcript quantifications) 25.3 MB
ENCFF916FKI.bigWig bigWig (minus strand signal of all reads) 60.4 MB
ENCFF950HXA.bam bam (transcriptome alignments) 3.3 GB
ENCFF960VHF.bigWig bigWig (minus strand signal of unique reads) 57.6 MB
ENCFF975FDN.bigWig bigWig (minus strand signal of unique reads) 54.2 MB
ENCFF975QKF.bigWig bigWig (minus strand signal of all reads) 56.7 MB
ENCFF984TZK.bigWig bigWig (plus strand signal of all reads) 67.0 MB
ENCFF990VXR.bam bam (transcriptome alignments) 4.1 GB
ENCFF995YOO.bigWig bigWig (minus strand signal of unique reads) 56.8 MB
ENCFF997EST.bigWig bigWig (plus strand signal of unique reads) 59.3 MB
ENCSR374NMJ ENCSR · via encode_api

RNA-seq on HepG2 cells treated with an shRNA knockdown against SF3A3. (SF3A3_BGHLV33)

Homo sapiens

92 data files
FileTypeSize
ENCFF029HIT.bigWig bigWig (minus strand signal of all reads) 86.7 MB
ENCFF047ADM.tsv tsv (differential expression quantifications) 3.0 MB
ENCFF047ONG.bigWig bigWig (minus strand signal of unique reads) 111.7 MB
ENCFF052TYJ.bigWig bigWig (plus strand signal of unique reads) 117.1 MB
ENCFF062HNQ.bigWig bigWig (minus strand signal of unique reads) 84.2 MB
ENCFF065SFP.bigWig bigWig (minus strand signal of all reads) 101.7 MB
ENCFF083QSK.bigWig bigWig (plus strand signal of all reads) 127.7 MB
ENCFF087IHX.tar tar (differential splicing quantifications) 5.2 MB
ENCFF093ALX.bigWig bigWig (minus strand signal of unique reads) 113.0 MB
ENCFF097LKJ.bigWig bigWig (plus strand signal of unique reads) 104.7 MB
ENCFF100NDA.bigWig bigWig (plus strand signal of all reads) 104.1 MB
ENCFF131BJL.bigWig bigWig (plus strand signal of unique reads) 87.4 MB
ENCFF131WOU.fastq fastq (reads) 5.7 GB
ENCFF143FLD.bigWig bigWig (minus strand signal of all reads) 109.3 MB
ENCFF156PDK.bam bam (transcriptome alignments) 11.9 GB
ENCFF167GAT.tsv tsv (transcript quantifications) 25.3 MB
ENCFF172CQN.bigWig bigWig (plus strand signal of unique reads) 106.9 MB
ENCFF175VDR.bigWig bigWig (plus strand signal of unique reads) 115.5 MB
ENCFF199KXX.bigWig bigWig (plus strand signal of unique reads) 82.4 MB
ENCFF213ABU.bigWig bigWig (minus strand signal of unique reads) 103.3 MB
ENCFF223PAF.fastq fastq (reads) 3.1 GB
ENCFF230RJO.bam bam (alignments) 4.7 GB
ENCFF242RLJ.tsv tsv (differential expression quantifications) 2.0 MB
ENCFF251SGM.bam bam (alignments) 10.2 GB
ENCFF269JHG.bam bam (alignments) 5.7 GB
ENCFF288EHK.bigWig bigWig (minus strand signal of unique reads) 111.6 MB
ENCFF291FDL.bam bam (alignments) 8.4 GB
ENCFF291PQQ.bigWig bigWig (minus strand signal of unique reads) 104.6 MB
ENCFF291VUK.bam bam (alignments) 4.7 GB
ENCFF293BZJ.bigWig bigWig (plus strand signal of all reads) 103.9 MB
ENCFF297AVJ.bigWig bigWig (minus strand signal of all reads) 89.8 MB
ENCFF309BKP.bigWig bigWig (minus strand signal of unique reads) 84.5 MB
ENCFF316SCK.tsv tsv (transcript quantifications) 29.9 MB
ENCFF329EOH.bam bam (transcriptome alignments) 13.5 GB
ENCFF346XHU.tar tar (differential splicing quantifications) 17.2 MB
ENCFF347CRO.tsv tsv (transcript quantifications) 27.4 MB
ENCFF366TBR.bam bam (alignments) 10.2 GB
ENCFF373JTP.bam bam (alignments) 4.7 GB
ENCFF402PBF.bigWig bigWig (plus strand signal of unique reads) 108.4 MB
ENCFF406ISI.tsv tsv (gene quantifications) 10.4 MB
ENCFF409RIX.bam bam (transcriptome alignments) 6.4 GB
ENCFF416GUO.bigWig bigWig (plus strand signal of all reads) 92.1 MB
ENCFF426IRU.bigWig bigWig (minus strand signal of all reads) 112.0 MB
ENCFF438JVC.bigWig bigWig (plus strand signal of all reads) 88.9 MB
ENCFF440NDK.bigWig bigWig (minus strand signal of unique reads) 91.1 MB
ENCFF453QIE.bigWig bigWig (minus strand signal of unique reads) 91.5 MB
ENCFF456FQN.bigWig bigWig (plus strand signal of unique reads) 87.2 MB
ENCFF483OWB.bigWig bigWig (plus strand signal of all reads) 115.2 MB
ENCFF488KXJ.bam bam (transcriptome alignments) 12.0 GB
ENCFF521QEL.tsv tsv (transcript quantifications) 25.0 MB
ENCFF550GUE.fastq fastq (reads) 3.1 GB
ENCFF575FPM.bigWig bigWig (plus strand signal of unique reads) 94.3 MB
ENCFF581HYM.bigWig bigWig (minus strand signal of unique reads) 100.8 MB
ENCFF591TME.tsv tsv (transcript quantifications) 25.4 MB
ENCFF606REG.bigWig bigWig (minus strand signal of all reads) 108.5 MB
ENCFF617XDZ.tsv tsv (gene quantifications) 9.5 MB
ENCFF642PBC.bigWig bigWig (minus strand signal of all reads) 123.9 MB
ENCFF658GQM.tsv tsv (gene quantifications) 9.5 MB
ENCFF660VCJ.bigWig bigWig (plus strand signal of all reads) 127.7 MB
ENCFF661IRQ.tsv tsv (transcript quantifications) 29.8 MB
ENCFF665RGY.bam bam (alignments) 5.7 GB
ENCFF670WXW.bam bam (transcriptome alignments) 6.3 GB
ENCFF676YAA.tsv tsv (transcript quantifications) 24.9 MB
ENCFF677KRY.bam bam (alignments) 5.6 GB
ENCFF680UPU.tsv tsv (gene quantifications) 10.4 MB
ENCFF683LMK.tsv tsv (gene quantifications) 9.1 MB
ENCFF695JFP.bigWig bigWig (minus strand signal of unique reads) 92.0 MB
ENCFF705SUF.bigWig bigWig (minus strand signal of all reads) 101.7 MB
ENCFF715KAE.fastq fastq (reads) 5.7 GB
ENCFF718PNV.bam bam (transcriptome alignments) 7.2 GB
ENCFF736VUK.bam bam (alignments) 8.4 GB
ENCFF738DQQ.bigWig bigWig (minus strand signal of all reads) 91.4 MB
ENCFF740QCH.bigWig bigWig (minus strand signal of all reads) 101.6 MB
ENCFF775BGP.bigWig bigWig (plus strand signal of unique reads) 115.6 MB
ENCFF779MUY.bigWig bigWig (minus strand signal of all reads) 124.4 MB
ENCFF792EYC.bigWig bigWig (plus strand signal of all reads) 111.7 MB
ENCFF800GLG.bigWig bigWig (plus strand signal of all reads) 126.9 MB
ENCFF833WTO.tsv tsv (transcript quantifications) 27.5 MB
ENCFF848YGQ.bigWig bigWig (minus strand signal of unique reads) 79.4 MB
ENCFF857YWM.bam bam (alignments) 8.4 GB
ENCFF868CQM.tsv tsv (differential expression quantifications) 4.5 MB
ENCFF880FBC.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF889GIR.bigWig bigWig (plus strand signal of unique reads) 95.3 MB
ENCFF908ZGN.bigWig bigWig (plus strand signal of all reads) 112.3 MB
ENCFF921TAP.bigWig bigWig (plus strand signal of all reads) 93.9 MB
ENCFF923LZN.bam bam (alignments) 10.0 GB
ENCFF945QLO.tar tar (differential splicing quantifications) 6.9 MB
ENCFF949TXB.tsv tsv (differential expression quantifications) 1.8 MB
ENCFF974ENM.bigWig bigWig (minus strand signal of all reads) 124.4 MB
ENCFF984CDS.tsv tsv (gene quantifications) 9.1 MB
ENCFF989XLI.bigWig bigWig (plus strand signal of unique reads) 94.8 MB
ENCFF993OWU.bigWig bigWig (plus strand signal of all reads) 104.1 MB
ENCSR561BTA ENCSR · via encode_api

Control ChIP-seq on HepG2

Homo sapiens

14 data files
FileTypeSize
ENCFF007WEC.bam bam (unfiltered alignments) 1.4 GB
ENCFF111YKS.bam bam (unfiltered alignments) 1.4 GB
ENCFF173SFW.bam bam (unfiltered alignments) 1.5 GB
ENCFF187JAE.bam bam (unfiltered alignments) 1.4 GB
ENCFF225UIW.bam bam (unfiltered alignments) 1.3 GB
ENCFF272IKY.bam bam (unfiltered alignments) 1.4 GB
ENCFF287BIH.bam bam (alignments) 1.0 GB
ENCFF289XBX.fastq fastq (reads) 977.3 MB
ENCFF327BCH.bam bam (alignments) 1.0 GB
ENCFF487XJU.bam bam (alignments) 1.1 GB
ENCFF550DOI.bam bam (alignments) 1.0 GB
ENCFF593HBL.fastq fastq (reads) 1021.8 MB
ENCFF758YUI.bam bam (alignments) 1.1 GB
ENCFF951CQL.bam bam (alignments) 1.1 GB
ENCSR450VQO ENCSR · via encode_api

shRNA knockdown against TIAL1 in HepG2 cells followed by RNA-seq. (TIAL1-BHLV20)

Homo sapiens

92 data files
FileTypeSize
ENCFF007OAZ.bigWig bigWig (minus strand signal of all reads) 73.7 MB
ENCFF025APP.tar tar (differential splicing quantifications) 3.7 MB
ENCFF027AML.bigWig bigWig (plus strand signal of all reads) 72.6 MB
ENCFF027JVP.bigWig bigWig (minus strand signal of all reads) 80.2 MB
ENCFF030SPJ.bigWig bigWig (plus strand signal of unique reads) 74.0 MB
ENCFF032PXL.fastq fastq (reads) 2.3 GB
ENCFF036JIA.bigWig bigWig (plus strand signal of all reads) 70.1 MB
ENCFF047JDM.bigWig bigWig (plus strand signal of all reads) 89.0 MB
ENCFF091VJI.bigWig bigWig (plus strand signal of unique reads) 74.1 MB
ENCFF097HKJ.tsv tsv (transcript quantifications) 27.4 MB
ENCFF098IDX.bigWig bigWig (minus strand signal of unique reads) 71.9 MB
ENCFF114LEZ.tsv tsv (transcript quantifications) 29.7 MB
ENCFF119TVK.tsv tsv (transcript quantifications) 24.8 MB
ENCFF148YLP.tsv tsv (gene quantifications) 9.1 MB
ENCFF151CJA.bigWig bigWig (minus strand signal of unique reads) 66.8 MB
ENCFF181RAV.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF181XOV.tsv tsv (differential expression quantifications) 1.8 MB
ENCFF182ARD.bigWig bigWig (plus strand signal of unique reads) 69.6 MB
ENCFF193GDQ.bigWig bigWig (plus strand signal of unique reads) 74.1 MB
ENCFF193QMF.bam bam (alignments) 4.4 GB
ENCFF196BET.bigWig bigWig (plus strand signal of unique reads) 65.5 MB
ENCFF205CNH.bigWig bigWig (minus strand signal of all reads) 68.4 MB
ENCFF206FQM.bam bam (alignments) 3.1 GB
ENCFF273JPU.bam bam (alignments) 3.5 GB
ENCFF287VCX.bigWig bigWig (minus strand signal of unique reads) 63.4 MB
ENCFF292SVX.bigWig bigWig (plus strand signal of all reads) 89.0 MB
ENCFF296TTJ.bam bam (alignments) 4.4 GB
ENCFF305QLI.bigWig bigWig (minus strand signal of unique reads) 77.5 MB
ENCFF328QRA.bigWig bigWig (minus strand signal of all reads) 78.6 MB
ENCFF337FXV.bigWig bigWig (minus strand signal of unique reads) 69.0 MB
ENCFF349KWF.bigWig bigWig (minus strand signal of all reads) 80.2 MB
ENCFF366FLB.tsv tsv (differential expression quantifications) 4.4 MB
ENCFF407MTM.bigWig bigWig (minus strand signal of all reads) 78.7 MB
ENCFF416PWC.tsv tsv (gene quantifications) 9.1 MB
ENCFF419RVK.bam bam (transcriptome alignments) 5.0 GB
ENCFF425GME.tsv tsv (gene quantifications) 9.4 MB
ENCFF468DJE.bam bam (alignments) 3.8 GB
ENCFF483CVJ.bigWig bigWig (minus strand signal of all reads) 87.2 MB
ENCFF486AME.fastq fastq (reads) 2.5 GB
ENCFF492MSH.tsv tsv (gene quantifications) 10.4 MB
ENCFF499WDL.bigWig bigWig (plus strand signal of all reads) 81.9 MB
ENCFF527YXI.bigWig bigWig (minus strand signal of all reads) 87.2 MB
ENCFF532DSI.tsv tsv (transcript quantifications) 25.3 MB
ENCFF573ELL.bigWig bigWig (minus strand signal of unique reads) 77.2 MB
ENCFF593CFB.bam bam (alignments) 4.3 GB
ENCFF594IZP.bam bam (alignments) 3.6 GB
ENCFF603GLO.bigWig bigWig (plus strand signal of all reads) 75.4 MB
ENCFF604SZR.bam bam (alignments) 3.1 GB
ENCFF604VSP.tsv tsv (transcript quantifications) 29.8 MB
ENCFF633VHL.tar tar (differential splicing quantifications) 3.1 MB
ENCFF634OMK.tsv tsv (differential expression quantifications) 3.0 MB
ENCFF634OOF.tar tar (differential splicing quantifications) 14.8 MB
ENCFF645EFN.bigWig bigWig (minus strand signal of all reads) 72.6 MB
ENCFF649JTY.bigWig bigWig (plus strand signal of unique reads) 79.7 MB
ENCFF669CIA.tsv tsv (gene quantifications) 9.4 MB
ENCFF669SRY.bigWig bigWig (plus strand signal of unique reads) 79.5 MB
ENCFF676ANO.tsv tsv (differential expression quantifications) 2.0 MB
ENCFF681EWH.bigWig bigWig (minus strand signal of unique reads) 73.9 MB
ENCFF684JFL.bam bam (transcriptome alignments) 4.9 GB
ENCFF687LAV.bam bam (transcriptome alignments) 4.0 GB
ENCFF691TYZ.bigWig bigWig (plus strand signal of all reads) 79.9 MB
ENCFF706ZGQ.tsv tsv (transcript quantifications) 25.2 MB
ENCFF716TEV.bigWig bigWig (minus strand signal of all reads) 71.1 MB
ENCFF723NJV.bigWig bigWig (plus strand signal of unique reads) 79.9 MB
ENCFF725REK.bigWig bigWig (plus strand signal of unique reads) 76.1 MB
ENCFF735EIQ.bigWig bigWig (plus strand signal of all reads) 87.6 MB
ENCFF735GOM.bam bam (transcriptome alignments) 4.4 GB
ENCFF752TMS.bam bam (alignments) 3.6 GB
ENCFF759XVO.bigWig bigWig (minus strand signal of unique reads) 71.8 MB
ENCFF763BMH.tsv tsv (gene quantifications) 10.4 MB
ENCFF765ZXA.bigWig bigWig (plus strand signal of all reads) 74.3 MB
ENCFF773GKQ.bigWig bigWig (plus strand signal of all reads) 81.9 MB
ENCFF782GJO.bigWig bigWig (plus strand signal of all reads) 80.0 MB
ENCFF784WDZ.bigWig bigWig (plus strand signal of unique reads) 75.0 MB
ENCFF810ROI.bigWig bigWig (minus strand signal of unique reads) 77.3 MB
ENCFF815TMC.bigWig bigWig (plus strand signal of unique reads) 71.4 MB
ENCFF828SOW.bigWig bigWig (minus strand signal of all reads) 86.1 MB
ENCFF845YSG.bam bam (transcriptome alignments) 5.5 GB
ENCFF847LIK.bigWig bigWig (minus strand signal of all reads) 78.2 MB
ENCFF857GEA.fastq fastq (reads) 2.0 GB
ENCFF879CNP.bigWig bigWig (minus strand signal of unique reads) 71.9 MB
ENCFF885TFA.bam bam (alignments) 3.8 GB
ENCFF900MCA.bigWig bigWig (minus strand signal of unique reads) 67.5 MB
ENCFF924JEI.bigWig bigWig (plus strand signal of unique reads) 68.7 MB
ENCFF924TKS.tsv tsv (transcript quantifications) 24.9 MB
ENCFF935GEY.bigWig bigWig (plus strand signal of all reads) 80.4 MB
ENCFF943PVG.tsv tsv (transcript quantifications) 27.3 MB
ENCFF944ZSG.bam bam (alignments) 3.1 GB
ENCFF947CVE.bigWig bigWig (minus strand signal of unique reads) 72.9 MB
ENCFF956QLR.bam bam (alignments) 3.8 GB
ENCFF963IHK.fastq fastq (reads) 1.8 GB
ENCFF995GGW.bam bam (transcriptome alignments) 4.0 GB
ENCSR984CLJ ENCSR · via encode_api

RNA-seq on K562 cells treated with an shRNA knockdown against KIAA1967. (KIAA1967_BGKLV25)

Homo sapiens

92 data files
FileTypeSize
ENCFF011EHJ.bam bam (alignments) 12.5 GB
ENCFF020KBA.bigWig bigWig (minus strand signal of all reads) 111.4 MB
ENCFF026QRD.bam bam (transcriptome alignments) 11.4 GB
ENCFF031UEO.tsv tsv (transcript quantifications) 25.3 MB
ENCFF076JPA.tar tar (differential splicing quantifications) 7.1 MB
ENCFF079PJT.bam bam (alignments) 7.7 GB
ENCFF084UMP.tsv tsv (transcript quantifications) 27.6 MB
ENCFF088NGD.bam bam (alignments) 7.8 GB
ENCFF093ZJW.bam bam (transcriptome alignments) 16.7 GB
ENCFF103DEI.tsv tsv (gene quantifications) 9.1 MB
ENCFF115JYN.bigWig bigWig (minus strand signal of all reads) 128.2 MB
ENCFF120CRT.fastq fastq (reads) 4.8 GB
ENCFF121WVL.bigWig bigWig (minus strand signal of unique reads) 142.7 MB
ENCFF131EZN.bam bam (alignments) 15.2 GB
ENCFF143MGB.bigWig bigWig (plus strand signal of all reads) 145.1 MB
ENCFF144BCM.bam bam (alignments) 12.4 GB
ENCFF150JSF.fastq fastq (reads) 7.9 GB
ENCFF150LCX.bigWig bigWig (minus strand signal of unique reads) 131.1 MB
ENCFF154UFA.bigWig bigWig (plus strand signal of all reads) 129.6 MB
ENCFF156XVB.bigWig bigWig (minus strand signal of unique reads) 103.7 MB
ENCFF170AHZ.bigWig bigWig (minus strand signal of all reads) 159.2 MB
ENCFF191MBU.bigWig bigWig (plus strand signal of unique reads) 104.6 MB
ENCFF195XBL.bigWig bigWig (plus strand signal of unique reads) 114.2 MB
ENCFF207ROV.bigWig bigWig (minus strand signal of all reads) 142.5 MB
ENCFF218OWJ.tsv tsv (transcript quantifications) 29.9 MB
ENCFF219MYG.bigWig bigWig (plus strand signal of unique reads) 115.5 MB
ENCFF240EPR.tsv tsv (gene quantifications) 9.5 MB
ENCFF240STS.bigWig bigWig (minus strand signal of all reads) 139.4 MB
ENCFF241QGP.bigWig bigWig (plus strand signal of unique reads) 128.6 MB
ENCFF258BGX.bigWig bigWig (minus strand signal of all reads) 162.1 MB
ENCFF259LFK.bigWig bigWig (plus strand signal of all reads) 161.4 MB
ENCFF276SHH.bam bam (transcriptome alignments) 10.1 GB
ENCFF284CDN.tsv tsv (transcript quantifications) 29.9 MB
ENCFF300HBH.bigWig bigWig (minus strand signal of unique reads) 125.1 MB
ENCFF339BQY.bigWig bigWig (plus strand signal of all reads) 129.5 MB
ENCFF350NBK.bigWig bigWig (plus strand signal of unique reads) 133.6 MB
ENCFF387QGP.bigWig bigWig (plus strand signal of all reads) 114.8 MB
ENCFF395OCQ.bigWig bigWig (plus strand signal of all reads) 143.9 MB
ENCFF406DAE.bam bam (alignments) 9.2 GB
ENCFF421AJN.tsv tsv (differential expression quantifications) 5.7 MB
ENCFF423SZM.bam bam (transcriptome alignments) 10.1 GB
ENCFF434AGX.bigWig bigWig (minus strand signal of unique reads) 101.7 MB
ENCFF438BKJ.bigWig bigWig (plus strand signal of unique reads) 116.1 MB
ENCFF453ODA.bam bam (alignments) 14.9 GB
ENCFF478INN.bam bam (alignments) 7.7 GB
ENCFF487YJM.fastq fastq (reads) 4.9 GB
ENCFF488YDY.tar tar (differential splicing quantifications) 5.5 MB
ENCFF518NRM.bigWig bigWig (plus strand signal of all reads) 112.1 MB
ENCFF534BWZ.bam bam (alignments) 9.4 GB
ENCFF537QLX.bigWig bigWig (minus strand signal of unique reads) 143.5 MB
ENCFF551BHK.bam bam (transcriptome alignments) 16.8 GB
ENCFF551JMX.tsv tsv (differential expression quantifications) 4.3 MB
ENCFF571ICN.tsv tsv (transcript quantifications) 24.9 MB
ENCFF605JVO.tar tar (differential splicing quantifications) 18.9 MB
ENCFF608TDG.tsv tsv (gene quantifications) 9.5 MB
ENCFF625NDX.bigWig bigWig (minus strand signal of unique reads) 102.4 MB
ENCFF628BEJ.bigWig bigWig (minus strand signal of unique reads) 141.7 MB
ENCFF652JUD.tsv tsv (transcript quantifications) 25.0 MB
ENCFF653FUI.bigWig bigWig (minus strand signal of unique reads) 113.7 MB
ENCFF668RQB.bigWig bigWig (plus strand signal of unique reads) 134.4 MB
ENCFF672UJX.bigWig bigWig (plus strand signal of all reads) 141.3 MB
ENCFF673FXQ.tsv tsv (differential expression quantifications) 1.8 MB
ENCFF687EKG.fastq fastq (reads) 7.9 GB
ENCFF695QSA.bigWig bigWig (plus strand signal of all reads) 164.2 MB
ENCFF704ABO.bigWig bigWig (minus strand signal of all reads) 162.2 MB
ENCFF713LEN.bigWig bigWig (minus strand signal of all reads) 126.0 MB
ENCFF731OGM.bigWig bigWig (plus strand signal of all reads) 127.5 MB
ENCFF740QKL.tsv tsv (transcript quantifications) 27.5 MB
ENCFF752YOM.tsv tsv (gene quantifications) 10.5 MB
ENCFF755TPJ.tsv tsv (transcript quantifications) 25.4 MB
ENCFF759UTC.bigWig bigWig (minus strand signal of unique reads) 113.1 MB
ENCFF761KRT.bigWig bigWig (minus strand signal of unique reads) 130.7 MB
ENCFF774PMC.bigWig bigWig (minus strand signal of all reads) 110.1 MB
ENCFF780BMP.bigWig bigWig (minus strand signal of all reads) 141.2 MB
ENCFF784GXO.tsv tsv (gene quantifications) 9.1 MB
ENCFF822VXG.bigWig bigWig (plus strand signal of all reads) 164.3 MB
ENCFF835PQD.bam bam (alignments) 15.2 GB
ENCFF840LZU.bigWig bigWig (minus strand signal of all reads) 112.8 MB
ENCFF843DEJ.bigWig bigWig (plus strand signal of unique reads) 104.5 MB
ENCFF861GFE.bigWig bigWig (plus strand signal of all reads) 112.7 MB
ENCFF862HMY.bigWig bigWig (plus strand signal of unique reads) 106.2 MB
ENCFF871FII.tsv tsv (differential expression quantifications) 2.8 MB
ENCFF875FDD.bigWig bigWig (plus strand signal of unique reads) 146.8 MB
ENCFF881QIX.bam bam (transcriptome alignments) 18.8 GB
ENCFF888DUL.bigWig bigWig (minus strand signal of unique reads) 111.6 MB
ENCFF924OPX.bam bam (alignments) 9.4 GB
ENCFF925WML.tsv tsv (gene quantifications) 10.4 MB
ENCFF933XCK.bigWig bigWig (plus strand signal of unique reads) 145.3 MB
ENCFF940BZR.bigWig bigWig (plus strand signal of unique reads) 146.0 MB
ENCFF956UNK.tsv tsv (differential expression quantifications) 2.0 MB
ENCFF979SAL.bam bam (alignments) 12.4 GB
ENCFF980NGM.bigWig bigWig (minus strand signal of all reads) 128.2 MB
ENCSR850FEH ENCSR · via encode_api

shRNA knockdown against GRWD1 in HepG2 cells followed by RNA-seq. (GRWD1_BGHLV18)

Homo sapiens

92 data files
FileTypeSize
ENCFF002PCV.bigWig bigWig (minus strand signal of unique reads) 60.2 MB
ENCFF003IEE.fastq fastq (reads) 1.9 GB
ENCFF013ZKH.bigWig bigWig (plus strand signal of all reads) 66.6 MB
ENCFF014VVW.bigWig bigWig (minus strand signal of unique reads) 66.2 MB
ENCFF025VCN.bigWig bigWig (minus strand signal of unique reads) 63.6 MB
ENCFF033VXN.bigWig bigWig (plus strand signal of unique reads) 71.8 MB
ENCFF056XKM.bam bam (transcriptome alignments) 4.9 GB
ENCFF062UKJ.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF097VAD.bam bam (transcriptome alignments) 5.5 GB
ENCFF109QDL.tsv tsv (transcript quantifications) 27.3 MB
ENCFF128GAY.bigWig bigWig (minus strand signal of all reads) 70.6 MB
ENCFF159LUG.bigWig bigWig (minus strand signal of all reads) 70.5 MB
ENCFF178WBJ.bigWig bigWig (plus strand signal of all reads) 78.8 MB
ENCFF181DMT.bam bam (alignments) 3.8 GB
ENCFF194KYP.bigWig bigWig (minus strand signal of all reads) 64.4 MB
ENCFF199ZSI.bigWig bigWig (minus strand signal of all reads) 77.4 MB
ENCFF217QJW.tsv tsv (gene quantifications) 10.4 MB
ENCFF222HQN.bigWig bigWig (minus strand signal of unique reads) 63.6 MB
ENCFF224MCD.bigWig bigWig (minus strand signal of unique reads) 70.0 MB
ENCFF226LEJ.tsv tsv (transcript quantifications) 27.3 MB
ENCFF248RIT.tsv tsv (differential expression quantifications) 1.8 MB
ENCFF265QQR.bam bam (transcriptome alignments) 4.6 GB
ENCFF266HSD.bigWig bigWig (minus strand signal of all reads) 70.0 MB
ENCFF272SHB.tsv tsv (gene quantifications) 9.1 MB
ENCFF279LCW.bigWig bigWig (plus strand signal of all reads) 78.0 MB
ENCFF281EHN.bigWig bigWig (minus strand signal of all reads) 65.3 MB
ENCFF293IFF.tsv tsv (gene quantifications) 9.1 MB
ENCFF300NZP.bigWig bigWig (plus strand signal of all reads) 71.1 MB
ENCFF330HAF.bigWig bigWig (minus strand signal of all reads) 68.4 MB
ENCFF338UZK.tsv tsv (differential expression quantifications) 2.8 MB
ENCFF340IFK.bam bam (alignments) 3.2 GB
ENCFF341BBQ.tsv tsv (transcript quantifications) 25.3 MB
ENCFF348RYC.bigWig bigWig (minus strand signal of unique reads) 63.6 MB
ENCFF364BXY.bigWig bigWig (plus strand signal of unique reads) 65.4 MB
ENCFF368WOK.tar tar (differential splicing quantifications) 3.5 MB
ENCFF379HJN.bigWig bigWig (plus strand signal of unique reads) 61.9 MB
ENCFF388EBI.bam bam (transcriptome alignments) 4.9 GB
ENCFF399GIJ.bigWig bigWig (minus strand signal of all reads) 62.5 MB
ENCFF401SJU.bam bam (alignments) 3.6 GB
ENCFF403UBZ.bigWig bigWig (plus strand signal of unique reads) 65.2 MB
ENCFF403VTS.bigWig bigWig (minus strand signal of all reads) 72.0 MB
ENCFF420WYN.bam bam (alignments) 3.5 GB
ENCFF454GIW.bigWig bigWig (plus strand signal of all reads) 63.8 MB
ENCFF456ZPX.tsv tsv (transcript quantifications) 25.3 MB
ENCFF459DCR.bigWig bigWig (plus strand signal of all reads) 69.7 MB
ENCFF475FWO.tsv tsv (differential expression quantifications) 4.1 MB
ENCFF486XGY.bigWig bigWig (minus strand signal of unique reads) 62.7 MB
ENCFF488MOL.fastq fastq (reads) 2.1 GB
ENCFF495IHV.bigWig bigWig (minus strand signal of all reads) 71.1 MB
ENCFF510VNQ.bigWig bigWig (plus strand signal of all reads) 71.8 MB
ENCFF530ZXM.bigWig bigWig (minus strand signal of all reads) 76.9 MB
ENCFF531DML.tar tar (differential splicing quantifications) 3.0 MB
ENCFF532KRS.bigWig bigWig (plus strand signal of unique reads) 60.0 MB
ENCFF538WJQ.bigWig bigWig (plus strand signal of all reads) 72.3 MB
ENCFF538YWW.bigWig bigWig (plus strand signal of unique reads) 68.4 MB
ENCFF540YRK.bigWig bigWig (plus strand signal of all reads) 78.7 MB
ENCFF541FWF.bigWig bigWig (minus strand signal of unique reads) 60.2 MB
ENCFF564LCX.bigWig bigWig (plus strand signal of unique reads) 71.8 MB
ENCFF565PCT.bam bam (alignments) 3.0 GB
ENCFF589BCC.bigWig bigWig (plus strand signal of unique reads) 65.2 MB
ENCFF625HKL.tsv tsv (transcript quantifications) 29.8 MB
ENCFF625MCN.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF640UVB.bigWig bigWig (minus strand signal of unique reads) 69.9 MB
ENCFF646ILP.bam bam (alignments) 3.0 GB
ENCFF664VKC.bigWig bigWig (minus strand signal of unique reads) 66.8 MB
ENCFF681EYY.bam bam (alignments) 3.0 GB
ENCFF695NHA.bam bam (alignments) 3.2 GB
ENCFF728KJR.bam bam (alignments) 3.6 GB
ENCFF732RZK.bigWig bigWig (minus strand signal of all reads) 77.4 MB
ENCFF740FMQ.bam bam (alignments) 3.9 GB
ENCFF752RWV.bigWig bigWig (plus strand signal of unique reads) 61.7 MB
ENCFF760XTM.bigWig bigWig (plus strand signal of all reads) 65.6 MB
ENCFF767KUP.tsv tsv (gene quantifications) 9.4 MB
ENCFF772PRS.tsv tsv (transcript quantifications) 29.8 MB
ENCFF801MMD.bigWig bigWig (plus strand signal of unique reads) 68.0 MB
ENCFF812KAI.fastq fastq (reads) 2.1 GB
ENCFF822DDL.tsv tsv (transcript quantifications) 24.9 MB
ENCFF838OTN.bam bam (alignments) 3.9 GB
ENCFF846QEU.bigWig bigWig (minus strand signal of unique reads) 58.3 MB
ENCFF848PIB.bigWig bigWig (plus strand signal of all reads) 73.5 MB
ENCFF849HOH.bigWig bigWig (plus strand signal of unique reads) 71.8 MB
ENCFF875QDL.bam bam (alignments) 3.2 GB
ENCFF879ZES.fastq fastq (reads) 2.2 GB
ENCFF908SEY.bam bam (transcriptome alignments) 5.3 GB
ENCFF919HVL.tsv tsv (gene quantifications) 10.4 MB
ENCFF941IZJ.bam bam (transcriptome alignments) 4.7 GB
ENCFF975NCV.bigWig bigWig (plus strand signal of unique reads) 64.4 MB
ENCFF982OQT.tsv tsv (gene quantifications) 9.4 MB
ENCFF982UTD.bigWig bigWig (minus strand signal of unique reads) 70.0 MB
ENCFF993SHB.tsv tsv (transcript quantifications) 24.9 MB
ENCFF996IXW.bigWig bigWig (plus strand signal of all reads) 71.8 MB
ENCFF999RMG.tar tar (differential splicing quantifications) 14.8 MB
ENCSR528ASX ENCSR · via encode_api

RNA-seq on K562 cells treated with an shRNA knockdown against GRWD1. (GRWD1_BGKLV21)

Homo sapiens

92 data files
FileTypeSize
ENCFF004IWA.bigWig bigWig (minus strand signal of unique reads) 61.4 MB
ENCFF017CDC.bam bam (transcriptome alignments) 3.5 GB
ENCFF017TWU.bigWig bigWig (minus strand signal of unique reads) 69.5 MB
ENCFF025VZX.bam bam (alignments) 2.6 GB
ENCFF027PWB.tar tar (differential splicing quantifications) 3.1 MB
ENCFF033BGV.bam bam (alignments) 3.1 GB
ENCFF059CLG.tsv tsv (transcript quantifications) 27.3 MB
ENCFF066JWR.bigWig bigWig (plus strand signal of unique reads) 58.5 MB
ENCFF074WVB.bam bam (alignments) 3.6 GB
ENCFF090YGQ.bigWig bigWig (minus strand signal of all reads) 78.0 MB
ENCFF099TCL.bigWig bigWig (minus strand signal of unique reads) 65.3 MB
ENCFF115ZKQ.bigWig bigWig (minus strand signal of all reads) 63.5 MB
ENCFF119ZHF.bigWig bigWig (plus strand signal of unique reads) 70.0 MB
ENCFF142GWE.bigWig bigWig (minus strand signal of unique reads) 62.0 MB
ENCFF174EQN.bam bam (alignments) 3.1 GB
ENCFF177FZB.bigWig bigWig (minus strand signal of unique reads) 60.8 MB
ENCFF188IHR.bigWig bigWig (plus strand signal of all reads) 63.2 MB
ENCFF190GRC.bam bam (transcriptome alignments) 4.7 GB
ENCFF193TJZ.bigWig bigWig (minus strand signal of all reads) 78.0 MB
ENCFF211LKP.bigWig bigWig (minus strand signal of unique reads) 57.1 MB
ENCFF218NAM.bigWig bigWig (plus strand signal of all reads) 70.3 MB
ENCFF230DUK.bam bam (alignments) 2.6 GB
ENCFF246WUC.tsv tsv (transcript quantifications) 24.9 MB
ENCFF248TQS.tsv tsv (gene quantifications) 9.4 MB
ENCFF267GOZ.bigWig bigWig (minus strand signal of all reads) 77.9 MB
ENCFF295VLL.tar tar (differential splicing quantifications) 14.4 MB
ENCFF298BFK.bigWig bigWig (plus strand signal of all reads) 72.0 MB
ENCFF331VUO.bigWig bigWig (plus strand signal of all reads) 71.4 MB
ENCFF332BXW.tsv tsv (transcript quantifications) 25.3 MB
ENCFF334UUL.bigWig bigWig (plus strand signal of unique reads) 66.5 MB
ENCFF335RFA.bigWig bigWig (minus strand signal of all reads) 65.6 MB
ENCFF342ODG.bam bam (transcriptome alignments) 4.2 GB
ENCFF355EPC.bigWig bigWig (plus strand signal of unique reads) 59.7 MB
ENCFF417DBF.bigWig bigWig (minus strand signal of all reads) 62.8 MB
ENCFF417SSZ.bigWig bigWig (plus strand signal of unique reads) 67.0 MB
ENCFF434EHY.bigWig bigWig (plus strand signal of all reads) 70.7 MB
ENCFF437KMQ.tsv tsv (transcript quantifications) 27.3 MB
ENCFF472KUE.bam bam (alignments) 3.1 GB
ENCFF484HSS.bigWig bigWig (minus strand signal of unique reads) 69.3 MB
ENCFF486EPT.bam bam (alignments) 3.1 GB
ENCFF499FXU.bigWig bigWig (minus strand signal of unique reads) 64.7 MB
ENCFF511TAQ.tsv tsv (gene quantifications) 9.1 MB
ENCFF519KPV.tsv tsv (gene quantifications) 9.1 MB
ENCFF519WEW.bigWig bigWig (minus strand signal of all reads) 71.0 MB
ENCFF526MPH.bam bam (transcriptome alignments) 4.0 GB
ENCFF533ZTK.bam bam (alignments) 2.6 GB
ENCFF560EER.bigWig bigWig (minus strand signal of all reads) 70.4 MB
ENCFF590EJN.fastq fastq (reads) 1.7 GB
ENCFF599EQZ.bigWig bigWig (plus strand signal of all reads) 79.2 MB
ENCFF616ZQN.fastq fastq (reads) 1.9 GB
ENCFF621MTL.tsv tsv (gene quantifications) 9.4 MB
ENCFF627XLB.bam bam (alignments) 3.7 GB
ENCFF636QZI.tsv tsv (transcript quantifications) 29.8 MB
ENCFF640CCJ.tsv tsv (gene quantifications) 10.4 MB
ENCFF646LBU.bigWig bigWig (plus strand signal of unique reads) 62.7 MB
ENCFF681VTZ.tsv tsv (differential expression quantifications) 5.5 MB
ENCFF682QDZ.bigWig bigWig (plus strand signal of all reads) 79.2 MB
ENCFF691WID.bigWig bigWig (plus strand signal of unique reads) 63.0 MB
ENCFF695ELD.bigWig bigWig (minus strand signal of all reads) 70.6 MB
ENCFF695GIX.bigWig bigWig (minus strand signal of all reads) 59.7 MB
ENCFF701SMS.bam bam (alignments) 3.1 GB
ENCFF711RWK.bam bam (alignments) 3.7 GB
ENCFF715YIK.bigWig bigWig (plus strand signal of unique reads) 56.5 MB
ENCFF717NPV.fastq fastq (reads) 1.6 GB
ENCFF721TTY.bam bam (transcriptome alignments) 4.2 GB
ENCFF732NHC.tsv tsv (transcript quantifications) 24.9 MB
ENCFF743ARB.bigWig bigWig (minus strand signal of unique reads) 68.1 MB
ENCFF756PCN.bigWig bigWig (plus strand signal of all reads) 67.1 MB
ENCFF757RAV.tsv tsv (differential expression quantifications) 2.8 MB
ENCFF761QSG.bigWig bigWig (plus strand signal of all reads) 79.1 MB
ENCFF762MBY.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF772GCG.bigWig bigWig (plus strand signal of unique reads) 62.8 MB
ENCFF792XIU.bigWig bigWig (plus strand signal of all reads) 61.0 MB
ENCFF820WQD.bam bam (transcriptome alignments) 3.5 GB
ENCFF830RQW.tar tar (differential splicing quantifications) 3.5 MB
ENCFF846FDH.fastq fastq (reads) 2.0 GB
ENCFF867PCJ.bigWig bigWig (minus strand signal of all reads) 70.5 MB
ENCFF871TXZ.tsv tsv (transcript quantifications) 25.3 MB
ENCFF871WIJ.bigWig bigWig (minus strand signal of unique reads) 61.0 MB
ENCFF896NSB.bigWig bigWig (minus strand signal of unique reads) 58.0 MB
ENCFF905FAQ.tsv tsv (gene quantifications) 10.4 MB
ENCFF906ECW.bigWig bigWig (plus strand signal of all reads) 64.0 MB
ENCFF910RMP.tsv tsv (differential expression quantifications) 1.6 MB
ENCFF912MBB.bigWig bigWig (plus strand signal of unique reads) 71.3 MB
ENCFF919WYI.bam bam (alignments) 3.1 GB
ENCFF931CQH.tsv tsv (differential expression quantifications) 4.1 MB
ENCFF936CEZ.tsv tsv (transcript quantifications) 29.8 MB
ENCFF939KGM.bigWig bigWig (plus strand signal of all reads) 70.7 MB
ENCFF948TZR.bigWig bigWig (plus strand signal of unique reads) 63.6 MB
ENCFF953WNB.bigWig bigWig (minus strand signal of unique reads) 54.8 MB
ENCFF971XWQ.bigWig bigWig (minus strand signal of all reads) 71.1 MB
ENCFF980ECO.bigWig bigWig (plus strand signal of unique reads) 71.4 MB
ENCSR968BBQ ENCSR · via encode_api

Control shRNA against no target in HepG2 cells followed by RNA-seq. (NT_BGHLV22B)

Homo sapiens

84 data files
FileTypeSize
ENCFF016AIN.bigWig bigWig (minus strand signal of unique reads) 91.5 MB
ENCFF017STB.bam bam (alignments) 6.8 GB
ENCFF020LSN.bigWig bigWig (minus strand signal of unique reads) 83.8 MB
ENCFF034ZZI.bigWig bigWig (minus strand signal of all reads) 87.3 MB
ENCFF049PPX.bigWig bigWig (plus strand signal of all reads) 105.8 MB
ENCFF061ZMY.bigWig bigWig (minus strand signal of all reads) 88.5 MB
ENCFF093WAY.tsv tsv (transcript quantifications) 25.3 MB
ENCFF119QUB.bam bam (alignments) 6.8 GB
ENCFF126AIQ.bigWig bigWig (minus strand signal of all reads) 92.3 MB
ENCFF129KTK.bigWig bigWig (minus strand signal of all reads) 104.6 MB
ENCFF133LBA.bigWig bigWig (minus strand signal of unique reads) 81.1 MB
ENCFF145NZF.tsv tsv (transcript quantifications) 25.0 MB
ENCFF150UUN.bam bam (alignments) 5.5 GB
ENCFF157FFL.tsv tsv (transcript quantifications) 25.0 MB
ENCFF175RJU.bigWig bigWig (minus strand signal of unique reads) 91.7 MB
ENCFF182KEH.bigWig bigWig (plus strand signal of all reads) 98.5 MB
ENCFF191DPA.tsv tsv (transcript quantifications) 27.4 MB
ENCFF202IYI.bigWig bigWig (plus strand signal of all reads) 104.0 MB
ENCFF222IAS.bigWig bigWig (plus strand signal of unique reads) 94.1 MB
ENCFF225PPW.bigWig bigWig (minus strand signal of all reads) 85.8 MB
ENCFF231QTU.bam bam (alignments) 6.2 GB
ENCFF239JNY.bam bam (alignments) 7.2 GB
ENCFF256ZIP.bigWig bigWig (minus strand signal of all reads) 84.3 MB
ENCFF260YXE.bigWig bigWig (minus strand signal of all reads) 102.9 MB
ENCFF270INB.bam bam (transcriptome alignments) 7.9 GB
ENCFF271YDX.fastq fastq (reads) 4.0 GB
ENCFF283VLJ.bigWig bigWig (plus strand signal of unique reads) 88.8 MB
ENCFF285QUP.bigWig bigWig (plus strand signal of all reads) 91.9 MB
ENCFF301YSL.bigWig bigWig (plus strand signal of unique reads) 82.7 MB
ENCFF305UVS.bam bam (transcriptome alignments) 8.4 GB
ENCFF324PPK.bigWig bigWig (minus strand signal of all reads) 98.9 MB
ENCFF325RWO.bigWig bigWig (plus strand signal of all reads) 105.9 MB
ENCFF351BDU.fastq fastq (reads) 4.0 GB
ENCFF357IOR.bam bam (alignments) 6.6 GB
ENCFF386QZI.tsv tsv (gene quantifications) 9.1 MB
ENCFF412VTM.bigWig bigWig (plus strand signal of all reads) 88.4 MB
ENCFF419VLB.bigWig bigWig (plus strand signal of all reads) 93.7 MB
ENCFF422PVD.bam bam (transcriptome alignments) 7.9 GB
ENCFF434POP.bam bam (transcriptome alignments) 8.8 GB
ENCFF437GTG.tsv tsv (transcript quantifications) 25.4 MB
ENCFF459DPA.bam bam (alignments) 5.5 GB
ENCFF485FVD.bam bam (alignments) 7.5 GB
ENCFF493TZH.bigWig bigWig (minus strand signal of unique reads) 87.9 MB
ENCFF494PUE.bigWig bigWig (minus strand signal of unique reads) 92.1 MB
ENCFF506WET.bigWig bigWig (plus strand signal of all reads) 85.4 MB
ENCFF515ISP.bigWig bigWig (minus strand signal of all reads) 90.8 MB
ENCFF531DQJ.bigWig bigWig (minus strand signal of unique reads) 78.1 MB
ENCFF532ALR.bigWig bigWig (minus strand signal of all reads) 104.7 MB
ENCFF535FNB.bigWig bigWig (minus strand signal of all reads) 97.5 MB
ENCFF545FZC.tsv tsv (gene quantifications) 9.5 MB
ENCFF556QNB.tsv tsv (gene quantifications) 9.1 MB
ENCFF615EPS.bigWig bigWig (minus strand signal of unique reads) 87.2 MB
ENCFF629GGM.bigWig bigWig (plus strand signal of all reads) 100.1 MB
ENCFF640RQT.bigWig bigWig (minus strand signal of unique reads) 81.6 MB
ENCFF655XIT.bigWig bigWig (minus strand signal of unique reads) 84.7 MB
ENCFF691GCE.bam bam (transcriptome alignments) 8.4 GB
ENCFF691SME.tsv tsv (gene quantifications) 10.4 MB
ENCFF694JDG.bam bam (transcriptome alignments) 9.5 GB
ENCFF706BVZ.bigWig bigWig (plus strand signal of unique reads) 85.5 MB
ENCFF727ZSF.bigWig bigWig (minus strand signal of unique reads) 80.6 MB
ENCFF734JJS.bigWig bigWig (plus strand signal of all reads) 89.8 MB
ENCFF744VRM.bigWig bigWig (plus strand signal of unique reads) 86.5 MB
ENCFF751XJU.bigWig bigWig (plus strand signal of all reads) 86.8 MB
ENCFF780BQD.tsv tsv (transcript quantifications) 29.9 MB
ENCFF797XKP.fastq fastq (reads) 3.6 GB
ENCFF804YYK.bigWig bigWig (minus strand signal of all reads) 98.9 MB
ENCFF806BTO.tsv tsv (gene quantifications) 10.4 MB
ENCFF814RUM.fastq fastq (reads) 3.6 GB
ENCFF836CRX.bigWig bigWig (plus strand signal of unique reads) 93.7 MB
ENCFF837XQW.tsv tsv (transcript quantifications) 27.5 MB
ENCFF852HPO.bigWig bigWig (plus strand signal of unique reads) 88.9 MB
ENCFF872AMG.bam bam (alignments) 7.5 GB
ENCFF873PHG.bigWig bigWig (plus strand signal of unique reads) 82.0 MB
ENCFF888SAG.bam bam (alignments) 5.6 GB
ENCFF898IWE.bigWig bigWig (plus strand signal of unique reads) 79.8 MB
ENCFF907LAZ.bam bam (alignments) 6.1 GB
ENCFF918YBN.bam bam (alignments) 6.1 GB
ENCFF920ZIL.bigWig bigWig (minus strand signal of unique reads) 87.1 MB
ENCFF933SFK.tsv tsv (transcript quantifications) 29.9 MB
ENCFF949TKH.bigWig bigWig (plus strand signal of unique reads) 93.5 MB
ENCFF950VCC.bigWig bigWig (plus strand signal of unique reads) 89.6 MB
ENCFF968MFB.bigWig bigWig (plus strand signal of all reads) 100.0 MB
ENCFF973VZI.bigWig bigWig (plus strand signal of unique reads) 83.6 MB
ENCFF990DOZ.tsv tsv (gene quantifications) 9.5 MB
ENCSR978BSJ ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) pulldown experiment against PABPN1L and KHSRP

1 data file
FileTypeSize
ENCFF670GMS.fastq fastq (reads) 596.2 MB
ENCSR047QHX ENCSR · via encode_api

RNA-seq on K562 cells treated with an shRNA knockdown against SF3B1. (SF3B1_BGKLV36)

Homo sapiens

92 data files
FileTypeSize
ENCFF002YOD.bam bam (alignments) 3.5 GB
ENCFF016IJW.bigWig bigWig (minus strand signal of all reads) 76.4 MB
ENCFF020VXN.bigWig bigWig (plus strand signal of all reads) 91.3 MB
ENCFF032FKL.bigWig bigWig (plus strand signal of unique reads) 70.5 MB
ENCFF035PNL.bigWig bigWig (plus strand signal of unique reads) 70.3 MB
ENCFF055SRG.bam bam (alignments) 3.3 GB
ENCFF072RWT.bigWig bigWig (minus strand signal of unique reads) 79.1 MB
ENCFF074LFN.bam bam (alignments) 3.3 GB
ENCFF085TKK.fastq fastq (reads) 2.7 GB
ENCFF090ZTM.bigWig bigWig (plus strand signal of all reads) 91.3 MB
ENCFF112JMS.bam bam (alignments) 3.3 GB
ENCFF128JZI.tsv tsv (gene quantifications) 9.5 MB
ENCFF135RRY.bam bam (alignments) 3.5 GB
ENCFF147ZVU.bigWig bigWig (plus strand signal of unique reads) 76.3 MB
ENCFF151GQG.fastq fastq (reads) 2.5 GB
ENCFF168XJR.bigWig bigWig (minus strand signal of unique reads) 74.5 MB
ENCFF172WSQ.bam bam (transcriptome alignments) 5.7 GB
ENCFF182FXU.tar tar (differential splicing quantifications) 4.3 MB
ENCFF183AHH.bam bam (alignments) 4.4 GB
ENCFF186OZQ.bigWig bigWig (plus strand signal of unique reads) 80.9 MB
ENCFF214YJO.tsv tsv (transcript quantifications) 27.3 MB
ENCFF230XFE.bigWig bigWig (plus strand signal of all reads) 75.3 MB
ENCFF239RWU.bigWig bigWig (plus strand signal of all reads) 71.8 MB
ENCFF250VDG.bigWig bigWig (minus strand signal of unique reads) 78.7 MB
ENCFF251WWD.tsv tsv (gene quantifications) 9.5 MB
ENCFF252FHX.bigWig bigWig (minus strand signal of all reads) 90.1 MB
ENCFF256UVZ.bam bam (alignments) 4.1 GB
ENCFF257PKX.bigWig bigWig (plus strand signal of unique reads) 75.8 MB
ENCFF262ASK.tsv tsv (gene quantifications) 10.4 MB
ENCFF286YCC.tsv tsv (transcript quantifications) 25.0 MB
ENCFF295IZF.bigWig bigWig (plus strand signal of unique reads) 80.4 MB
ENCFF299OPQ.bam bam (alignments) 4.3 GB
ENCFF327AAB.bigWig bigWig (minus strand signal of all reads) 88.8 MB
ENCFF340JGN.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF340YYE.bigWig bigWig (minus strand signal of unique reads) 69.7 MB
ENCFF363XNZ.bigWig bigWig (minus strand signal of all reads) 75.9 MB
ENCFF379JAB.bam bam (alignments) 4.4 GB
ENCFF425GWW.bam bam (alignments) 3.5 GB
ENCFF440HDB.bigWig bigWig (minus strand signal of unique reads) 68.8 MB
ENCFF452DST.tar tar (differential splicing quantifications) 13.4 MB
ENCFF465KYV.tsv tsv (gene quantifications) 9.1 MB
ENCFF466NWD.bigWig bigWig (plus strand signal of unique reads) 75.9 MB
ENCFF480KXI.bigWig bigWig (minus strand signal of all reads) 70.5 MB
ENCFF485XSB.bigWig bigWig (minus strand signal of all reads) 79.7 MB
ENCFF492OAX.bigWig bigWig (plus strand signal of all reads) 77.8 MB
ENCFF513LAE.bigWig bigWig (plus strand signal of unique reads) 74.6 MB
ENCFF524EYO.bigWig bigWig (plus strand signal of all reads) 85.7 MB
ENCFF561JKT.bigWig bigWig (plus strand signal of all reads) 77.4 MB
ENCFF569FGK.bigWig bigWig (plus strand signal of all reads) 84.8 MB
ENCFF582PPR.fastq fastq (reads) 2.4 GB
ENCFF585KKY.tsv tsv (gene quantifications) 9.1 MB
ENCFF589QQE.tar tar (differential splicing quantifications) 3.6 MB
ENCFF597MVA.bigWig bigWig (plus strand signal of all reads) 85.7 MB
ENCFF618OMU.bigWig bigWig (minus strand signal of unique reads) 64.6 MB
ENCFF636GTW.bigWig bigWig (minus strand signal of all reads) 83.6 MB
ENCFF653ZMS.bam bam (transcriptome alignments) 5.0 GB
ENCFF683PRU.bigWig bigWig (plus strand signal of all reads) 80.7 MB
ENCFF685QWB.bam bam (transcriptome alignments) 5.9 GB
ENCFF690XTV.bam bam (transcriptome alignments) 5.2 GB
ENCFF692LHE.bigWig bigWig (plus strand signal of unique reads) 66.3 MB
ENCFF697FPH.tsv tsv (transcript quantifications) 25.0 MB
ENCFF711SHJ.tsv tsv (transcript quantifications) 25.4 MB
ENCFF716RTI.fastq fastq (reads) 2.6 GB
ENCFF723ARF.tsv tsv (transcript quantifications) 27.4 MB
ENCFF740ZFY.bigWig bigWig (plus strand signal of all reads) 90.1 MB
ENCFF746TRK.tsv tsv (transcript quantifications) 29.9 MB
ENCFF756ATQ.bigWig bigWig (plus strand signal of all reads) 82.9 MB
ENCFF759ZRN.bam bam (transcriptome alignments) 5.0 GB
ENCFF766IWD.bigWig bigWig (minus strand signal of all reads) 74.4 MB
ENCFF770OCO.tsv tsv (differential expression quantifications) 4.4 MB
ENCFF784TWP.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF796BOH.tsv tsv (differential expression quantifications) 5.5 MB
ENCFF797VRI.bigWig bigWig (minus strand signal of unique reads) 73.1 MB
ENCFF799SGD.bigWig bigWig (minus strand signal of all reads) 84.6 MB
ENCFF810EKS.tsv tsv (gene quantifications) 10.4 MB
ENCFF863HAB.bam bam (transcriptome alignments) 5.1 GB
ENCFF868PST.bigWig bigWig (minus strand signal of all reads) 90.1 MB
ENCFF873XMR.bigWig bigWig (minus strand signal of unique reads) 78.4 MB
ENCFF879CQK.tsv tsv (differential expression quantifications) 2.0 MB
ENCFF884HBA.bigWig bigWig (minus strand signal of unique reads) 74.1 MB
ENCFF888GPL.bam bam (alignments) 4.0 GB
ENCFF899DON.bigWig bigWig (minus strand signal of all reads) 81.4 MB
ENCFF920FAO.bigWig bigWig (minus strand signal of unique reads) 68.5 MB
ENCFF946HGK.bam bam (alignments) 4.1 GB
ENCFF951NSL.bigWig bigWig (plus strand signal of unique reads) 75.8 MB
ENCFF977FSJ.bigWig bigWig (plus strand signal of unique reads) 80.4 MB
ENCFF981AKQ.bigWig bigWig (minus strand signal of unique reads) 74.2 MB
ENCFF984KWD.bigWig bigWig (minus strand signal of unique reads) 74.1 MB
ENCFF986BAL.bigWig bigWig (minus strand signal of all reads) 84.6 MB
ENCFF990ROC.tsv tsv (transcript quantifications) 25.4 MB
ENCFF992HCS.tsv tsv (transcript quantifications) 29.9 MB
ENCFF997VPX.bigWig bigWig (plus strand signal of unique reads) 71.5 MB
ENCSR840QOH ENCSR · via encode_api

RNA-seq on HepG2 cells treated with an shRNA knockdown against ETF1. (ETF1_BGHLV37)

Homo sapiens

92 data files
FileTypeSize
ENCFF017GST.bigWig bigWig (minus strand signal of all reads) 151.7 MB
ENCFF042XGP.bigWig bigWig (plus strand signal of all reads) 141.4 MB
ENCFF051CAG.bam bam (alignments) 5.0 GB
ENCFF072SBD.bigWig bigWig (plus strand signal of unique reads) 132.5 MB
ENCFF085ELJ.bigWig bigWig (plus strand signal of unique reads) 137.5 MB
ENCFF086UVA.bam bam (alignments) 4.8 GB
ENCFF113IXP.bigWig bigWig (minus strand signal of unique reads) 126.6 MB
ENCFF122IBB.tsv tsv (transcript quantifications) 24.9 MB
ENCFF134ZWQ.bigWig bigWig (plus strand signal of all reads) 97.4 MB
ENCFF144IXI.fastq fastq (reads) 5.2 GB
ENCFF164AFO.bigWig bigWig (minus strand signal of all reads) 104.2 MB
ENCFF167ZLI.bigWig bigWig (minus strand signal of all reads) 93.9 MB
ENCFF181CCT.tsv tsv (gene quantifications) 10.4 MB
ENCFF183GUB.bigWig bigWig (minus strand signal of all reads) 137.1 MB
ENCFF187LON.tsv tsv (gene quantifications) 10.4 MB
ENCFF194YPO.tsv tsv (differential expression quantifications) 2.0 MB
ENCFF205AOX.bam bam (alignments) 4.0 GB
ENCFF219DWM.tsv tsv (transcript quantifications) 27.6 MB
ENCFF236URG.tsv tsv (differential expression quantifications) 1.8 MB
ENCFF236WLN.tsv tsv (gene quantifications) 9.5 MB
ENCFF244NHB.bam bam (transcriptome alignments) 7.2 GB
ENCFF254PSW.bigWig bigWig (plus strand signal of all reads) 153.9 MB
ENCFF278NVW.bigWig bigWig (minus strand signal of all reads) 104.2 MB
ENCFF280IAP.bigWig bigWig (minus strand signal of unique reads) 87.9 MB
ENCFF283BFT.fastq fastq (reads) 5.2 GB
ENCFF298PYT.bam bam (alignments) 4.0 GB
ENCFF312OME.bigWig bigWig (minus strand signal of all reads) 150.4 MB
ENCFF327FMG.tar tar (differential splicing quantifications) 4.5 MB
ENCFF336TXK.tsv tsv (gene quantifications) 9.1 MB
ENCFF382FAU.bigWig bigWig (minus strand signal of unique reads) 134.0 MB
ENCFF387JWS.bigWig bigWig (plus strand signal of unique reads) 131.2 MB
ENCFF422RQY.bigWig bigWig (plus strand signal of all reads) 139.0 MB
ENCFF423OFY.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF430ILM.bigWig bigWig (plus strand signal of all reads) 139.3 MB
ENCFF430YCI.tsv tsv (gene quantifications) 9.1 MB
ENCFF438GRS.bigWig bigWig (plus strand signal of all reads) 103.8 MB
ENCFF467QHA.bam bam (alignments) 9.3 GB
ENCFF477CKG.bigWig bigWig (minus strand signal of unique reads) 128.0 MB
ENCFF478SRL.fastq fastq (reads) 2.7 GB
ENCFF502RPS.bigWig bigWig (plus strand signal of all reads) 105.7 MB
ENCFF519DFQ.bigWig bigWig (minus strand signal of unique reads) 92.8 MB
ENCFF535QMP.bigWig bigWig (plus strand signal of unique reads) 90.4 MB
ENCFF539BKF.bigWig bigWig (plus strand signal of all reads) 95.3 MB
ENCFF542ZIT.bigWig bigWig (plus strand signal of all reads) 153.9 MB
ENCFF556VZG.bigWig bigWig (minus strand signal of unique reads) 129.0 MB
ENCFF566PUX.bigWig bigWig (minus strand signal of all reads) 136.6 MB
ENCFF590QLU.bam bam (alignments) 5.0 GB
ENCFF605GGV.bam bam (alignments) 9.3 GB
ENCFF611HBN.bam bam (alignments) 7.5 GB
ENCFF620CVC.tar tar (differential splicing quantifications) 6.0 MB
ENCFF661LTX.bigWig bigWig (plus strand signal of unique reads) 137.9 MB
ENCFF668QHC.bam bam (transcriptome alignments) 13.4 GB
ENCFF671UCP.tsv tsv (transcript quantifications) 25.3 MB
ENCFF675DIR.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF678UGN.bigWig bigWig (plus strand signal of unique reads) 95.1 MB
ENCFF683TPH.bigWig bigWig (plus strand signal of unique reads) 95.1 MB
ENCFF700QOG.bam bam (alignments) 9.1 GB
ENCFF703OXP.bigWig bigWig (minus strand signal of unique reads) 134.5 MB
ENCFF708UAO.bam bam (transcriptome alignments) 11.8 GB
ENCFF711PQN.bigWig bigWig (minus strand signal of unique reads) 135.5 MB
ENCFF718BPB.tsv tsv (transcript quantifications) 25.3 MB
ENCFF722LHJ.bam bam (transcriptome alignments) 6.3 GB
ENCFF736KMK.bigWig bigWig (plus strand signal of unique reads) 95.3 MB
ENCFF736MZX.bigWig bigWig (minus strand signal of all reads) 93.0 MB
ENCFF739UUY.fastq fastq (reads) 2.7 GB
ENCFF744KLW.bam bam (alignments) 7.6 GB
ENCFF749KLL.bigWig bigWig (plus strand signal of all reads) 105.7 MB
ENCFF751EBA.tsv tsv (transcript quantifications) 29.8 MB
ENCFF780CYI.bigWig bigWig (plus strand signal of all reads) 94.6 MB
ENCFF782MTA.bigWig bigWig (minus strand signal of unique reads) 88.2 MB
ENCFF784MEE.bigWig bigWig (minus strand signal of unique reads) 92.9 MB
ENCFF799AZF.bigWig bigWig (minus strand signal of unique reads) 86.2 MB
ENCFF828IQY.tsv tsv (transcript quantifications) 29.8 MB
ENCFF829OKD.bam bam (alignments) 4.1 GB
ENCFF836SXE.tsv tsv (differential expression quantifications) 4.5 MB
ENCFF889IIN.bam bam (alignments) 7.5 GB
ENCFF905QWR.bigWig bigWig (minus strand signal of unique reads) 92.7 MB
ENCFF908KUQ.bigWig bigWig (plus strand signal of unique reads) 88.6 MB
ENCFF908PCY.bigWig bigWig (minus strand signal of all reads) 102.5 MB
ENCFF931VMR.bam bam (transcriptome alignments) 6.3 GB
ENCFF932ESM.bigWig bigWig (plus strand signal of unique reads) 130.1 MB
ENCFF933VHE.bam bam (transcriptome alignments) 11.7 GB
ENCFF936IHB.tsv tsv (gene quantifications) 9.4 MB
ENCFF936QEO.bigWig bigWig (minus strand signal of all reads) 151.7 MB
ENCFF936URA.bigWig bigWig (minus strand signal of all reads) 95.7 MB
ENCFF940GCD.bigWig bigWig (plus strand signal of unique reads) 90.2 MB
ENCFF970VVX.tsv tsv (transcript quantifications) 24.9 MB
ENCFF972HNB.tsv tsv (transcript quantifications) 27.4 MB
ENCFF973VGD.bigWig bigWig (plus strand signal of unique reads) 139.0 MB
ENCFF975TSH.bigWig bigWig (minus strand signal of all reads) 138.9 MB
ENCFF980EWO.bigWig bigWig (plus strand signal of all reads) 152.4 MB
ENCFF998QIV.tar tar (differential splicing quantifications) 19.2 MB
ENCSR224SND ENCSR · via encode_api

eCLIP control experiment on K562 against DHX30

Homo sapiens

8 data files
FileTypeSize
ENCFF245WDH.fastq fastq (reads) 743.1 MB
ENCFF325PKM.bam bam (alignments) 856.0 MB
ENCFF418SOC.fastq fastq (reads) 835.7 MB
ENCFF620NIR.bigWig bigWig (plus strand signal of unique reads) 39.5 MB
ENCFF703NSH.bam bam (alignments) 870.2 MB
ENCFF754IIK.bigWig bigWig (minus strand signal of unique reads) 38.3 MB
ENCFF782MCB.bigWig bigWig (plus strand signal of unique reads) 40.1 MB
ENCFF996RON.bigWig bigWig (minus strand signal of unique reads) 38.9 MB
ENCSR023ESV ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) input control experiment of RBFOX3

1 data file
FileTypeSize
ENCFF771NKG.fastq fastq (reads) 349.4 MB
ENCSR191PTZ ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) pulldown experiment against PRR3

16 data files
FileTypeSize
ENCFF002RAY.fastq fastq (reads) 418.2 MB
ENCFF016DMQ.fastq fastq (reads) 372.7 MB
ENCFF188LWK.tsv tsv (library fraction) 64.7 KB
ENCFF245OMP.tsv tsv (library fraction) 1.1 MB
ENCFF281FSW.tsv tsv (library fraction) 265.2 KB
ENCFF305FZN.fastq fastq (reads) 378.8 MB
ENCFF373IHG.tsv tsv (enrichment) 168.1 KB
ENCFF466EQG.tsv tsv (enrichment) 41.0 KB
ENCFF492NKP.tsv tsv (enrichment) 10.0 KB
ENCFF584IYE.fastq fastq (reads) 389.0 MB
ENCFF672EUE.tsv tsv (enrichment) 131.0 B
ENCFF688ATJ.tsv tsv (enrichment) 247.0 B
ENCFF744ZDN.tsv tsv (enrichment) 688.2 KB
ENCFF859IFZ.fastq fastq (reads) 500.8 MB
ENCFF897OZY.tsv tsv (library fraction) 15.6 KB
ENCFF984XGE.tsv tsv (enrichment) 109.0 B
ENCSR991XFO ENCSR · via encode_api

RNA-seq on HepG2 cells treated with a CRISPR gRNA against DROSHA. (DROSHA_BGHcLV05)

Homo sapiens

92 data files
FileTypeSize
ENCFF012YWG.tsv tsv (transcript quantifications) 25.5 MB
ENCFF038TRX.tsv tsv (transcript quantifications) 25.1 MB
ENCFF041PLF.bam bam (alignments) 5.9 GB
ENCFF042ZZD.bigWig bigWig (plus strand signal of all reads) 44.5 MB
ENCFF062LLJ.tsv tsv (gene quantifications) 9.1 MB
ENCFF064UIL.bigWig bigWig (plus strand signal of all reads) 38.3 MB
ENCFF065IYG.bigWig bigWig (minus strand signal of all reads) 45.9 MB
ENCFF073NQM.bam bam (alignments) 4.0 GB
ENCFF090NMD.bigWig bigWig (minus strand signal of unique reads) 45.8 MB
ENCFF092SLA.bigWig bigWig (minus strand signal of unique reads) 45.8 MB
ENCFF112IPI.bigWig bigWig (minus strand signal of unique reads) 35.0 MB
ENCFF139MXA.bam bam (alignments) 4.8 GB
ENCFF146RDE.tsv tsv (gene quantifications) 10.4 MB
ENCFF161PVE.bigWig bigWig (plus strand signal of unique reads) 39.4 MB
ENCFF165PTP.bigWig bigWig (plus strand signal of unique reads) 35.4 MB
ENCFF173GSE.bigWig bigWig (minus strand signal of unique reads) 45.6 MB
ENCFF198MYC.bigWig bigWig (plus strand signal of unique reads) 42.4 MB
ENCFF203JMF.bigWig bigWig (plus strand signal of all reads) 51.7 MB
ENCFF218CCE.bigWig bigWig (minus strand signal of all reads) 42.6 MB
ENCFF245TVM.bigWig bigWig (plus strand signal of unique reads) 46.8 MB
ENCFF247QJF.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF260IFE.bam bam (alignments) 4.8 GB
ENCFF267GPW.bam bam (transcriptome alignments) 6.6 GB
ENCFF272PSJ.tsv tsv (gene quantifications) 10.4 MB
ENCFF297DJZ.tsv tsv (gene quantifications) 9.5 MB
ENCFF310UJH.tar tar (differential splicing quantifications) 11.0 MB
ENCFF313PKA.bigWig bigWig (minus strand signal of all reads) 37.8 MB
ENCFF346PJG.bigWig bigWig (minus strand signal of unique reads) 38.7 MB
ENCFF347OZV.bigWig bigWig (minus strand signal of all reads) 36.1 MB
ENCFF350UPR.bam bam (transcriptome alignments) 5.8 GB
ENCFF368GIL.bam bam (transcriptome alignments) 5.8 GB
ENCFF373QWY.bigWig bigWig (plus strand signal of all reads) 52.6 MB
ENCFF401QQP.bigWig bigWig (minus strand signal of unique reads) 39.4 MB
ENCFF426GYT.bigWig bigWig (minus strand signal of unique reads) 41.5 MB
ENCFF429CCG.bigWig bigWig (minus strand signal of unique reads) 38.2 MB
ENCFF429NJV.bigWig bigWig (minus strand signal of unique reads) 41.6 MB
ENCFF429WII.tar tar (differential splicing quantifications) 1.8 MB
ENCFF431UAU.bam bam (alignments) 4.0 GB
ENCFF435YEF.bigWig bigWig (plus strand signal of all reads) 52.6 MB
ENCFF442DOR.tar tar (differential splicing quantifications) 2.1 MB
ENCFF453KZT.tsv tsv (differential expression quantifications) 3.9 MB
ENCFF474ARF.bigWig bigWig (plus strand signal of all reads) 46.6 MB
ENCFF502FYX.bigWig bigWig (minus strand signal of all reads) 51.2 MB
ENCFF512MPD.bigWig bigWig (plus strand signal of unique reads) 40.2 MB
ENCFF515VZS.bigWig bigWig (plus strand signal of unique reads) 35.7 MB
ENCFF520YFE.fastq fastq (reads) 3.0 GB
ENCFF523OXV.bam bam (alignments) 4.0 GB
ENCFF540UNK.fastq fastq (reads) 3.0 GB
ENCFF553MSP.bigWig bigWig (minus strand signal of all reads) 44.1 MB
ENCFF558UCN.bigWig bigWig (plus strand signal of unique reads) 46.6 MB
ENCFF559QIY.tsv tsv (transcript quantifications) 30.0 MB
ENCFF569AGC.bigWig bigWig (plus strand signal of all reads) 44.5 MB
ENCFF571TMT.tsv tsv (differential expression quantifications) 2.7 MB
ENCFF574MZO.tsv tsv (transcript quantifications) 27.1 MB
ENCFF578QKN.tsv tsv (gene quantifications) 9.5 MB
ENCFF590RUQ.bam bam (transcriptome alignments) 6.3 GB
ENCFF607XJG.bigWig bigWig (minus strand signal of unique reads) 38.7 MB
ENCFF607XSG.bigWig bigWig (plus strand signal of unique reads) 39.5 MB
ENCFF609IQG.tsv tsv (transcript quantifications) 25.1 MB
ENCFF610XRN.bigWig bigWig (plus strand signal of unique reads) 42.4 MB
ENCFF616XEQ.tsv tsv (gene quantifications) 9.1 MB
ENCFF621FMO.bigWig bigWig (plus strand signal of all reads) 36.5 MB
ENCFF627WKW.bigWig bigWig (minus strand signal of unique reads) 33.2 MB
ENCFF628IOO.bigWig bigWig (plus strand signal of all reads) 37.7 MB
ENCFF638ASA.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF687CRE.bigWig bigWig (minus strand signal of all reads) 44.0 MB
ENCFF691UMG.bigWig bigWig (plus strand signal of unique reads) 46.8 MB
ENCFF696WPA.bam bam (transcriptome alignments) 7.2 GB
ENCFF714QUA.bigWig bigWig (plus strand signal of all reads) 44.0 MB
ENCFF720RXS.tsv tsv (transcript quantifications) 27.1 MB
ENCFF802RUV.bigWig bigWig (plus strand signal of all reads) 43.3 MB
ENCFF813FBF.bigWig bigWig (minus strand signal of all reads) 43.7 MB
ENCFF814DFY.tsv tsv (transcript quantifications) 30.0 MB
ENCFF828XAK.fastq fastq (reads) 3.6 GB
ENCFF857BOI.bigWig bigWig (minus strand signal of all reads) 51.9 MB
ENCFF857CNV.bam bam (alignments) 5.9 GB
ENCFF863MZO.bigWig bigWig (plus strand signal of unique reads) 33.8 MB
ENCFF879ERP.bam bam (transcriptome alignments) 6.3 GB
ENCFF883RDS.bigWig bigWig (plus strand signal of all reads) 44.6 MB
ENCFF885MZN.bam bam (alignments) 4.8 GB
ENCFF887YQH.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF889QNZ.bam bam (alignments) 4.9 GB
ENCFF904CKN.tsv tsv (transcript quantifications) 25.5 MB
ENCFF940TXN.bigWig bigWig (plus strand signal of unique reads) 39.0 MB
ENCFF943LFY.bigWig bigWig (minus strand signal of all reads) 52.0 MB
ENCFF954PQI.bam bam (alignments) 4.9 GB
ENCFF980LMO.bam bam (alignments) 5.0 GB
ENCFF982WYQ.fastq fastq (reads) 3.6 GB
ENCFF983OQZ.bigWig bigWig (minus strand signal of unique reads) 34.8 MB
ENCFF985LSO.bam bam (alignments) 5.9 GB
ENCFF990CED.bigWig bigWig (minus strand signal of all reads) 44.0 MB
ENCFF992OEV.bigWig bigWig (minus strand signal of all reads) 37.2 MB
ENCSR490DYI ENCSR · via encode_api

RNA-seq on HepG2 cells treated with an shRNA knockdown against HNRNPLL. (HNRNPLL_BGHLV35)

Homo sapiens

92 data files
FileTypeSize
ENCFF026VNR.fastq fastq (reads) 3.3 GB
ENCFF049UJQ.bam bam (alignments) 4.9 GB
ENCFF068ZUQ.tar tar (differential splicing quantifications) 2.9 MB
ENCFF078BSD.bigWig bigWig (minus strand signal of unique reads) 62.8 MB
ENCFF079AYY.bigWig bigWig (minus strand signal of unique reads) 68.3 MB
ENCFF111KOR.bam bam (alignments) 5.6 GB
ENCFF113KON.tsv tsv (gene quantifications) 9.1 MB
ENCFF115BEZ.tsv tsv (gene quantifications) 9.5 MB
ENCFF115LAT.bigWig bigWig (plus strand signal of unique reads) 67.8 MB
ENCFF124UYC.tsv tsv (differential expression quantifications) 2.0 MB
ENCFF128DCH.bigWig bigWig (plus strand signal of unique reads) 70.0 MB
ENCFF134KEZ.bigWig bigWig (minus strand signal of all reads) 63.7 MB
ENCFF139HOI.bigWig bigWig (minus strand signal of unique reads) 66.3 MB
ENCFF140GTQ.tsv tsv (transcript quantifications) 27.3 MB
ENCFF143ROO.bigWig bigWig (plus strand signal of all reads) 67.9 MB
ENCFF145KGS.tsv tsv (transcript quantifications) 25.4 MB
ENCFF151TDU.tsv tsv (gene quantifications) 9.1 MB
ENCFF155SFQ.bigWig bigWig (minus strand signal of unique reads) 60.1 MB
ENCFF156CWK.bigWig bigWig (plus strand signal of unique reads) 68.2 MB
ENCFF170SML.bigWig bigWig (minus strand signal of all reads) 74.7 MB
ENCFF173JBC.bigWig bigWig (minus strand signal of unique reads) 66.0 MB
ENCFF183UVL.bigWig bigWig (minus strand signal of all reads) 65.0 MB
ENCFF203CIV.bigWig bigWig (plus strand signal of unique reads) 69.9 MB
ENCFF217QWG.bigWig bigWig (plus strand signal of all reads) 78.8 MB
ENCFF218JTL.bam bam (alignments) 5.0 GB
ENCFF222BEF.bigWig bigWig (plus strand signal of all reads) 70.0 MB
ENCFF246DLS.bigWig bigWig (plus strand signal of all reads) 67.8 MB
ENCFF264DPW.bigWig bigWig (minus strand signal of unique reads) 68.1 MB
ENCFF311ANE.bigWig bigWig (minus strand signal of all reads) 66.4 MB
ENCFF327VQX.bigWig bigWig (minus strand signal of all reads) 66.6 MB
ENCFF342HFH.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF360TIH.bigWig bigWig (plus strand signal of all reads) 65.2 MB
ENCFF366TBK.bigWig bigWig (minus strand signal of unique reads) 60.9 MB
ENCFF370WAJ.fastq fastq (reads) 3.4 GB
ENCFF374ZJM.tsv tsv (gene quantifications) 10.4 MB
ENCFF376AUX.tsv tsv (gene quantifications) 10.4 MB
ENCFF379AFG.tsv tsv (transcript quantifications) 29.9 MB
ENCFF381MLP.tsv tsv (differential expression quantifications) 5.7 MB
ENCFF385XAV.bigWig bigWig (plus strand signal of all reads) 75.1 MB
ENCFF426MEJ.bam bam (transcriptome alignments) 6.7 GB
ENCFF429CMO.bam bam (transcriptome alignments) 6.9 GB
ENCFF431LMX.bam bam (alignments) 5.8 GB
ENCFF431OIH.tsv tsv (transcript quantifications) 25.4 MB
ENCFF440QST.bam bam (transcriptome alignments) 6.6 GB
ENCFF443IPN.fastq fastq (reads) 3.3 GB
ENCFF450BYU.tsv tsv (transcript quantifications) 27.3 MB
ENCFF457CYK.bigWig bigWig (minus strand signal of unique reads) 68.0 MB
ENCFF457ZFL.bigWig bigWig (plus strand signal of all reads) 65.3 MB
ENCFF467ZDS.bigWig bigWig (plus strand signal of all reads) 77.4 MB
ENCFF476MGH.bigWig bigWig (plus strand signal of all reads) 66.4 MB
ENCFF477FOK.bigWig bigWig (plus strand signal of unique reads) 68.1 MB
ENCFF487DUA.bigWig bigWig (plus strand signal of unique reads) 63.1 MB
ENCFF494VFX.bigWig bigWig (minus strand signal of all reads) 77.4 MB
ENCFF498KAY.bigWig bigWig (minus strand signal of unique reads) 61.4 MB
ENCFF531IZP.bigWig bigWig (minus strand signal of unique reads) 63.2 MB
ENCFF533STD.tsv tsv (differential expression quantifications) 3.0 MB
ENCFF544EIW.bigWig bigWig (minus strand signal of all reads) 77.4 MB
ENCFF550WGB.bigWig bigWig (plus strand signal of unique reads) 61.9 MB
ENCFF603WSV.bigWig bigWig (minus strand signal of all reads) 64.1 MB
ENCFF604LRB.bam bam (transcriptome alignments) 7.7 GB
ENCFF609IME.bam bam (transcriptome alignments) 7.5 GB
ENCFF614RHN.bigWig bigWig (plus strand signal of all reads) 76.1 MB
ENCFF639MCK.tar tar (differential splicing quantifications) 3.7 MB
ENCFF650ZEJ.bam bam (alignments) 6.0 GB
ENCFF653QZX.bam bam (alignments) 4.9 GB
ENCFF660WBS.bigWig bigWig (plus strand signal of all reads) 78.8 MB
ENCFF689AHV.tsv tsv (transcript quantifications) 25.0 MB
ENCFF690NLD.bigWig bigWig (plus strand signal of unique reads) 65.0 MB
ENCFF709PSS.tsv tsv (transcript quantifications) 25.0 MB
ENCFF712OYC.tsv tsv (transcript quantifications) 29.9 MB
ENCFF716SZH.bigWig bigWig (minus strand signal of all reads) 68.6 MB
ENCFF724QDF.bigWig bigWig (minus strand signal of all reads) 73.9 MB
ENCFF737FMO.bigWig bigWig (plus strand signal of all reads) 76.1 MB
ENCFF742PLW.bam bam (alignments) 5.8 GB
ENCFF747CQM.bam bam (alignments) 6.0 GB
ENCFF762QRC.bam bam (alignments) 4.8 GB
ENCFF793OGD.bigWig bigWig (minus strand signal of all reads) 76.2 MB
ENCFF795XVM.bigWig bigWig (minus strand signal of all reads) 74.7 MB
ENCFF812EYM.bigWig bigWig (minus strand signal of unique reads) 66.4 MB
ENCFF818OFU.bigWig bigWig (plus strand signal of unique reads) 64.4 MB
ENCFF838PXF.bigWig bigWig (plus strand signal of unique reads) 60.0 MB
ENCFF841CWK.fastq fastq (reads) 3.4 GB
ENCFF846LPR.bam bam (alignments) 4.8 GB
ENCFF892ZRL.tsv tsv (gene quantifications) 9.5 MB
ENCFF909KKU.bigWig bigWig (plus strand signal of unique reads) 70.3 MB
ENCFF917LLE.bigWig bigWig (plus strand signal of unique reads) 62.5 MB
ENCFF919UOO.tsv tsv (differential expression quantifications) 4.4 MB
ENCFF931ZOV.tar tar (differential splicing quantifications) 14.8 MB
ENCFF943AOQ.bigWig bigWig (minus strand signal of unique reads) 58.2 MB
ENCFF949OLP.bam bam (alignments) 4.8 GB
ENCFF966FYM.bam bam (alignments) 5.8 GB
ENCFF972HMQ.bam bam (transcriptome alignments) 6.8 GB
ENCSR385UPQ ENCSR · via encode_api

RNA-seq on K562 cells treated with an shRNA knockdown against RBM15. (RBM15_BGKLV32)

Homo sapiens

92 data files
FileTypeSize
ENCFF009VTQ.bigWig bigWig (plus strand signal of all reads) 106.7 MB
ENCFF032VWU.bigWig bigWig (plus strand signal of all reads) 106.7 MB
ENCFF046WUX.bigWig bigWig (minus strand signal of all reads) 105.7 MB
ENCFF051KVU.bigWig bigWig (plus strand signal of unique reads) 95.9 MB
ENCFF063YQJ.bam bam (alignments) 5.1 GB
ENCFF064CMT.bigWig bigWig (minus strand signal of all reads) 105.7 MB
ENCFF075YYF.tsv tsv (gene quantifications) 10.4 MB
ENCFF085WGB.bigWig bigWig (plus strand signal of all reads) 106.8 MB
ENCFF094EZU.tsv tsv (differential expression quantifications) 2.0 MB
ENCFF098FWP.tar tar (differential splicing quantifications) 4.4 MB
ENCFF101CWS.bigWig bigWig (plus strand signal of all reads) 94.8 MB
ENCFF101UQM.bigWig bigWig (minus strand signal of all reads) 94.7 MB
ENCFF117DRU.bam bam (alignments) 6.7 GB
ENCFF132WXE.tsv tsv (gene quantifications) 10.4 MB
ENCFF178WBA.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF180RMT.tsv tsv (transcript quantifications) 25.4 MB
ENCFF186CEX.tsv tsv (gene quantifications) 9.1 MB
ENCFF196GZR.bam bam (alignments) 6.8 GB
ENCFF202YPF.tar tar (differential splicing quantifications) 16.7 MB
ENCFF214VDA.bigWig bigWig (plus strand signal of unique reads) 94.9 MB
ENCFF220PPI.tsv tsv (transcript quantifications) 29.9 MB
ENCFF241TXV.tsv tsv (differential expression quantifications) 4.5 MB
ENCFF241ZDA.bigWig bigWig (minus strand signal of all reads) 92.2 MB
ENCFF292WOW.bigWig bigWig (minus strand signal of unique reads) 93.2 MB
ENCFF298RGF.bigWig bigWig (plus strand signal of unique reads) 96.8 MB
ENCFF305ZHR.bigWig bigWig (plus strand signal of unique reads) 89.4 MB
ENCFF305ZPH.tsv tsv (transcript quantifications) 24.9 MB
ENCFF312XDA.bigWig bigWig (plus strand signal of unique reads) 87.1 MB
ENCFF319HDF.tsv tsv (gene quantifications) 9.5 MB
ENCFF331MLD.bigWig bigWig (minus strand signal of all reads) 103.7 MB
ENCFF345DEY.bigWig bigWig (minus strand signal of unique reads) 92.1 MB
ENCFF348IDY.tsv tsv (transcript quantifications) 25.4 MB
ENCFF348WLE.bigWig bigWig (minus strand signal of all reads) 90.9 MB
ENCFF350GML.bam bam (transcriptome alignments) 7.1 GB
ENCFF355EHE.bam bam (alignments) 6.3 GB
ENCFF359BHE.bam bam (transcriptome alignments) 8.0 GB
ENCFF368LRL.bam bam (alignments) 6.8 GB
ENCFF430ISK.bam bam (alignments) 6.2 GB
ENCFF430QNJ.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF431ZLF.bigWig bigWig (minus strand signal of unique reads) 93.4 MB
ENCFF454AAI.bam bam (transcriptome alignments) 7.3 GB
ENCFF462HXP.bigWig bigWig (plus strand signal of unique reads) 89.0 MB
ENCFF471JVN.bigWig bigWig (plus strand signal of unique reads) 89.3 MB
ENCFF496XUC.bam bam (transcriptome alignments) 8.3 GB
ENCFF508SSM.bigWig bigWig (plus strand signal of unique reads) 96.9 MB
ENCFF512YTM.fastq fastq (reads) 3.5 GB
ENCFF514PRU.bam bam (alignments) 5.2 GB
ENCFF517UUT.bigWig bigWig (minus strand signal of all reads) 104.4 MB
ENCFF521NYG.bigWig bigWig (plus strand signal of unique reads) 89.1 MB
ENCFF556BSY.bigWig bigWig (plus strand signal of unique reads) 86.7 MB
ENCFF556ZHS.bigWig bigWig (plus strand signal of unique reads) 96.4 MB
ENCFF558IIF.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF571OGX.tar tar (differential splicing quantifications) 5.8 MB
ENCFF630GNS.bigWig bigWig (minus strand signal of all reads) 92.8 MB
ENCFF639SDN.bigWig bigWig (plus strand signal of all reads) 93.7 MB
ENCFF664XEW.fastq fastq (reads) 3.4 GB
ENCFF678NSA.bam bam (transcriptome alignments) 7.3 GB
ENCFF679AZG.bam bam (alignments) 5.2 GB
ENCFF689LCB.bigWig bigWig (plus strand signal of all reads) 93.5 MB
ENCFF693JOD.tsv tsv (transcript quantifications) 29.9 MB
ENCFF693ZOK.tsv tsv (gene quantifications) 9.1 MB
ENCFF694ZKJ.bigWig bigWig (plus strand signal of unique reads) 96.2 MB
ENCFF696ZAN.bigWig bigWig (minus strand signal of unique reads) 86.3 MB
ENCFF701UWC.bigWig bigWig (plus strand signal of all reads) 106.1 MB
ENCFF719OYP.bam bam (alignments) 5.1 GB
ENCFF727ZTQ.bigWig bigWig (plus strand signal of all reads) 96.7 MB
ENCFF728NET.bigWig bigWig (minus strand signal of unique reads) 93.0 MB
ENCFF728OBP.bam bam (alignments) 6.7 GB
ENCFF739DTT.bigWig bigWig (plus strand signal of all reads) 97.1 MB
ENCFF740ZKJ.bigWig bigWig (plus strand signal of all reads) 94.3 MB
ENCFF746ZXQ.bigWig bigWig (minus strand signal of unique reads) 86.4 MB
ENCFF754UBL.bigWig bigWig (minus strand signal of unique reads) 84.0 MB
ENCFF759KWX.bam bam (alignments) 5.4 GB
ENCFF808VFS.tsv tsv (transcript quantifications) 27.4 MB
ENCFF814DLL.tsv tsv (gene quantifications) 9.5 MB
ENCFF818XRJ.tsv tsv (transcript quantifications) 27.4 MB
ENCFF850UTW.bigWig bigWig (minus strand signal of unique reads) 94.1 MB
ENCFF858RWY.bam bam (alignments) 5.4 GB
ENCFF877CJU.bigWig bigWig (minus strand signal of all reads) 104.5 MB
ENCFF877CXP.bam bam (transcriptome alignments) 7.1 GB
ENCFF886YPB.bigWig bigWig (minus strand signal of all reads) 91.0 MB
ENCFF892GUZ.fastq fastq (reads) 3.4 GB
ENCFF908ZPI.fastq fastq (reads) 3.5 GB
ENCFF918UNT.tsv tsv (transcript quantifications) 24.9 MB
ENCFF924CWI.bigWig bigWig (plus strand signal of all reads) 107.8 MB
ENCFF933NKL.bigWig bigWig (minus strand signal of unique reads) 86.9 MB
ENCFF946EWA.bigWig bigWig (minus strand signal of unique reads) 93.9 MB
ENCFF949CRU.bigWig bigWig (plus strand signal of all reads) 107.8 MB
ENCFF952JKB.bigWig bigWig (minus strand signal of all reads) 104.5 MB
ENCFF962HVG.bigWig bigWig (minus strand signal of unique reads) 86.4 MB
ENCFF987KWN.bigWig bigWig (minus strand signal of unique reads) 83.9 MB
ENCFF990HJD.bigWig bigWig (minus strand signal of all reads) 94.1 MB
ENCSR640ADB ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) input control experiment of CPEB1

1 data file
FileTypeSize
ENCFF214QKC.fastq fastq (reads) 458.9 MB
ENCSR635BOO ENCSR · via encode_api

RNA-seq on HepG2 cells treated with an shRNA knockdown against SNRNP70. (SNRNP70_BGHLV35)

Homo sapiens

92 data files
FileTypeSize
ENCFF007RJO.bigWig bigWig (plus strand signal of all reads) 77.9 MB
ENCFF008TKC.bigWig bigWig (plus strand signal of unique reads) 71.2 MB
ENCFF031UPH.bam bam (alignments) 5.9 GB
ENCFF057QNP.bigWig bigWig (minus strand signal of unique reads) 63.0 MB
ENCFF058OGQ.tsv tsv (gene quantifications) 10.4 MB
ENCFF063VQK.bigWig bigWig (plus strand signal of all reads) 90.9 MB
ENCFF064PLG.bigWig bigWig (minus strand signal of unique reads) 78.7 MB
ENCFF080EFD.bam bam (alignments) 5.6 GB
ENCFF106YCG.bigWig bigWig (plus strand signal of unique reads) 69.5 MB
ENCFF126UQP.bam bam (alignments) 5.6 GB
ENCFF138XVU.fastq fastq (reads) 3.4 GB
ENCFF148LLR.bam bam (transcriptome alignments) 7.9 GB
ENCFF155WWZ.bigWig bigWig (plus strand signal of all reads) 79.0 MB
ENCFF186EZO.tsv tsv (differential expression quantifications) 5.7 MB
ENCFF186MWG.bam bam (alignments) 5.8 GB
ENCFF199LKM.bigWig bigWig (plus strand signal of all reads) 78.4 MB
ENCFF214BVS.tsv tsv (transcript quantifications) 25.4 MB
ENCFF218QEY.bam bam (transcriptome alignments) 6.9 GB
ENCFF219PFG.bigWig bigWig (minus strand signal of all reads) 76.2 MB
ENCFF223IUE.bam bam (transcriptome alignments) 7.8 GB
ENCFF225YDN.tsv tsv (differential expression quantifications) 4.4 MB
ENCFF254EHU.bigWig bigWig (minus strand signal of unique reads) 63.5 MB
ENCFF262AWO.bigWig bigWig (minus strand signal of unique reads) 72.1 MB
ENCFF262LWK.bigWig bigWig (minus strand signal of all reads) 64.5 MB
ENCFF274KQA.bigWig bigWig (plus strand signal of unique reads) 81.2 MB
ENCFF285AJM.tsv tsv (gene quantifications) 9.1 MB
ENCFF305IBD.bam bam (alignments) 6.6 GB
ENCFF313HVV.tsv tsv (gene quantifications) 9.5 MB
ENCFF318FWA.bigWig bigWig (plus strand signal of all reads) 90.9 MB
ENCFF319BXC.bigWig bigWig (minus strand signal of unique reads) 68.8 MB
ENCFF325QEA.bigWig bigWig (plus strand signal of unique reads) 74.2 MB
ENCFF335KEM.bigWig bigWig (minus strand signal of all reads) 89.0 MB
ENCFF342XSU.bigWig bigWig (plus strand signal of all reads) 66.2 MB
ENCFF344CNX.bigWig bigWig (plus strand signal of all reads) 68.4 MB
ENCFF361DOS.bam bam (alignments) 4.9 GB
ENCFF366UPO.bam bam (alignments) 5.6 GB
ENCFF367WUN.tsv tsv (gene quantifications) 10.4 MB
ENCFF414BQK.bigWig bigWig (minus strand signal of unique reads) 68.2 MB
ENCFF415OLK.bam bam (alignments) 4.9 GB
ENCFF422FUT.bigWig bigWig (plus strand signal of all reads) 79.0 MB
ENCFF422JSV.bam bam (transcriptome alignments) 7.8 GB
ENCFF436QYY.bigWig bigWig (minus strand signal of all reads) 76.8 MB
ENCFF455KZB.fastq fastq (reads) 3.8 GB
ENCFF462XEN.tsv tsv (differential expression quantifications) 3.0 MB
ENCFF471FYT.bigWig bigWig (plus strand signal of unique reads) 62.1 MB
ENCFF476JMK.bigWig bigWig (plus strand signal of all reads) 77.3 MB
ENCFF488IAM.bam bam (alignments) 6.7 GB
ENCFF488KEE.bigWig bigWig (minus strand signal of unique reads) 71.8 MB
ENCFF501NHV.bigWig bigWig (plus strand signal of unique reads) 71.1 MB
ENCFF502XGN.bigWig bigWig (plus strand signal of all reads) 90.2 MB
ENCFF522SGX.tsv tsv (differential expression quantifications) 2.0 MB
ENCFF528LUY.bam bam (alignments) 5.9 GB
ENCFF543HZN.bam bam (transcriptome alignments) 6.9 GB
ENCFF548LMX.bigWig bigWig (plus strand signal of unique reads) 65.6 MB
ENCFF567FME.tar tar (differential splicing quantifications) 15.2 MB
ENCFF575NGK.tsv tsv (transcript quantifications) 25.4 MB
ENCFF581YSC.bigWig bigWig (minus strand signal of all reads) 88.4 MB
ENCFF589TVU.bigWig bigWig (plus strand signal of all reads) 69.9 MB
ENCFF616PXC.tsv tsv (transcript quantifications) 25.0 MB
ENCFF619WHQ.fastq fastq (reads) 3.3 GB
ENCFF621KWL.bigWig bigWig (minus strand signal of unique reads) 78.7 MB
ENCFF632WYX.tsv tsv (transcript quantifications) 27.4 MB
ENCFF641IDY.bigWig bigWig (minus strand signal of all reads) 66.7 MB
ENCFF655LGM.tsv tsv (transcript quantifications) 29.9 MB
ENCFF659ZDM.tsv tsv (transcript quantifications) 25.0 MB
ENCFF708VCW.tsv tsv (gene quantifications) 9.5 MB
ENCFF710FSK.tsv tsv (differential expression quantifications) 1.8 MB
ENCFF717XEO.bam bam (alignments) 4.9 GB
ENCFF722YRJ.bigWig bigWig (minus strand signal of unique reads) 67.3 MB
ENCFF733KFZ.bigWig bigWig (plus strand signal of unique reads) 80.8 MB
ENCFF736NQG.bigWig bigWig (minus strand signal of unique reads) 60.1 MB
ENCFF741XZT.bigWig bigWig (plus strand signal of unique reads) 70.5 MB
ENCFF748GBI.bigWig bigWig (plus strand signal of unique reads) 64.9 MB
ENCFF792FWO.tsv tsv (gene quantifications) 9.1 MB
ENCFF813ODS.bam bam (transcriptome alignments) 8.9 GB
ENCFF820HVW.bigWig bigWig (plus strand signal of unique reads) 74.0 MB
ENCFF834BRJ.bigWig bigWig (minus strand signal of all reads) 89.0 MB
ENCFF839TCQ.bigWig bigWig (minus strand signal of unique reads) 69.0 MB
ENCFF858JEW.bigWig bigWig (plus strand signal of unique reads) 81.1 MB
ENCFF871QBP.bam bam (alignments) 6.7 GB
ENCFF898MNT.bigWig bigWig (minus strand signal of all reads) 75.4 MB
ENCFF899XNP.tsv tsv (transcript quantifications) 27.4 MB
ENCFF906UAI.bigWig bigWig (minus strand signal of all reads) 68.2 MB
ENCFF922LCG.fastq fastq (reads) 3.9 GB
ENCFF929BPD.bigWig bigWig (minus strand signal of unique reads) 78.4 MB
ENCFF929PGE.bigWig bigWig (plus strand signal of all reads) 80.5 MB
ENCFF931CVT.tar tar (differential splicing quantifications) 3.3 MB
ENCFF932JMA.tsv tsv (transcript quantifications) 29.9 MB
ENCFF959YDA.bigWig bigWig (minus strand signal of all reads) 78.6 MB
ENCFF979DNR.tar tar (differential splicing quantifications) 4.2 MB
ENCFF983IZQ.bigWig bigWig (minus strand signal of all reads) 77.1 MB
ENCFF998AHA.bigWig bigWig (minus strand signal of all reads) 77.1 MB
ENCSR481WJH ENCSR · via encode_api

Control CRISPR gRNA against no target in HepG2 cells followed by RNA-seq. (NT_BGHcLV05)

Homo sapiens

84 data files
FileTypeSize
ENCFF005NBQ.bigWig bigWig (plus strand signal of all reads) 52.2 MB
ENCFF009DSS.bam bam (transcriptome alignments) 5.3 GB
ENCFF022NXX.bigWig bigWig (minus strand signal of unique reads) 42.5 MB
ENCFF051FJX.fastq fastq (reads) 2.5 GB
ENCFF095PYP.bigWig bigWig (minus strand signal of all reads) 51.0 MB
ENCFF115IBD.tsv tsv (transcript quantifications) 25.1 MB
ENCFF134QXL.bigWig bigWig (minus strand signal of unique reads) 58.7 MB
ENCFF145BZR.bam bam (alignments) 3.2 GB
ENCFF167QNA.bigWig bigWig (minus strand signal of unique reads) 40.5 MB
ENCFF168QRH.bam bam (transcriptome alignments) 5.2 GB
ENCFF183BRO.bigWig bigWig (plus strand signal of all reads) 59.6 MB
ENCFF185PVS.bigWig bigWig (plus strand signal of unique reads) 53.7 MB
ENCFF186CSI.bigWig bigWig (plus strand signal of unique reads) 56.7 MB
ENCFF187EUR.tsv tsv (transcript quantifications) 29.9 MB
ENCFF209DDE.bigWig bigWig (minus strand signal of unique reads) 58.8 MB
ENCFF230CCM.bam bam (alignments) 4.0 GB
ENCFF242LSW.bigWig bigWig (minus strand signal of all reads) 51.5 MB
ENCFF245CCO.bigWig bigWig (plus strand signal of unique reads) 46.6 MB
ENCFF265QYG.bigWig bigWig (minus strand signal of all reads) 46.1 MB
ENCFF270TLB.bam bam (alignments) 3.2 GB
ENCFF273GET.tsv tsv (transcript quantifications) 25.0 MB
ENCFF279BRC.tsv tsv (transcript quantifications) 27.2 MB
ENCFF279PXN.bigWig bigWig (plus strand signal of all reads) 61.4 MB
ENCFF281BDP.bam bam (alignments) 3.2 GB
ENCFF287SRR.bigWig bigWig (plus strand signal of all reads) 52.2 MB
ENCFF290POG.bigWig bigWig (plus strand signal of unique reads) 60.0 MB
ENCFF292PJU.bam bam (alignments) 3.9 GB
ENCFF315QRK.bigWig bigWig (plus strand signal of all reads) 47.8 MB
ENCFF333IRK.bigWig bigWig (minus strand signal of all reads) 58.9 MB
ENCFF333VAN.tsv tsv (gene quantifications) 9.1 MB
ENCFF365ACA.bigWig bigWig (minus strand signal of unique reads) 45.7 MB
ENCFF376UJP.bigWig bigWig (plus strand signal of unique reads) 60.4 MB
ENCFF412LNS.tsv tsv (transcript quantifications) 25.4 MB
ENCFF429EQF.bigWig bigWig (plus strand signal of all reads) 51.6 MB
ENCFF430WNH.bigWig bigWig (plus strand signal of all reads) 58.4 MB
ENCFF432WNR.bam bam (alignments) 3.2 GB
ENCFF451HHY.tsv tsv (gene quantifications) 10.4 MB
ENCFF452HUT.tsv tsv (transcript quantifications) 27.1 MB
ENCFF460YOT.fastq fastq (reads) 2.5 GB
ENCFF481MBU.bigWig bigWig (minus strand signal of unique reads) 55.8 MB
ENCFF508IRF.tsv tsv (gene quantifications) 9.5 MB
ENCFF510NQL.bigWig bigWig (minus strand signal of all reads) 43.8 MB
ENCFF521YEX.tsv tsv (gene quantifications) 10.4 MB
ENCFF524QCW.tsv tsv (gene quantifications) 9.5 MB
ENCFF525UHT.bigWig bigWig (plus strand signal of unique reads) 46.7 MB
ENCFF527QKK.bam bam (transcriptome alignments) 4.9 GB
ENCFF531WSM.bam bam (alignments) 3.9 GB
ENCFF535WOP.bigWig bigWig (plus strand signal of unique reads) 43.8 MB
ENCFF540MHZ.bigWig bigWig (minus strand signal of all reads) 66.4 MB
ENCFF560MYI.bigWig bigWig (plus strand signal of unique reads) 41.4 MB
ENCFF582TZT.tsv tsv (transcript quantifications) 25.5 MB
ENCFF624GUC.bigWig bigWig (minus strand signal of unique reads) 45.7 MB
ENCFF640PSX.bigWig bigWig (plus strand signal of all reads) 44.5 MB
ENCFF644FSF.bigWig bigWig (plus strand signal of all reads) 46.7 MB
ENCFF652FPM.bigWig bigWig (minus strand signal of all reads) 51.4 MB
ENCFF655BZW.bigWig bigWig (minus strand signal of all reads) 60.5 MB
ENCFF661ODM.bigWig bigWig (minus strand signal of unique reads) 45.7 MB
ENCFF662RZN.bigWig bigWig (plus strand signal of unique reads) 60.0 MB
ENCFF663NZS.bigWig bigWig (minus strand signal of unique reads) 52.6 MB
ENCFF700CEX.bigWig bigWig (plus strand signal of unique reads) 46.6 MB
ENCFF737CSN.fastq fastq (reads) 2.5 GB
ENCFF740AMB.bigWig bigWig (minus strand signal of all reads) 47.1 MB
ENCFF744PAI.bigWig bigWig (minus strand signal of unique reads) 59.2 MB
ENCFF750MUG.bam bam (transcriptome alignments) 4.9 GB
ENCFF763ZJL.tsv tsv (gene quantifications) 9.1 MB
ENCFF768RNO.bam bam (transcriptome alignments) 5.6 GB
ENCFF774HSL.bigWig bigWig (minus strand signal of all reads) 66.4 MB
ENCFF776AHW.bam bam (alignments) 3.9 GB
ENCFF782QYO.fastq fastq (reads) 2.4 GB
ENCFF784MDQ.bigWig bigWig (plus strand signal of unique reads) 56.9 MB
ENCFF843QOP.bam bam (alignments) 3.2 GB
ENCFF852TKI.bigWig bigWig (minus strand signal of all reads) 65.3 MB
ENCFF856XWQ.bam bam (alignments) 3.2 GB
ENCFF912HRV.bigWig bigWig (plus strand signal of unique reads) 43.4 MB
ENCFF913JKA.bigWig bigWig (plus strand signal of all reads) 67.3 MB
ENCFF930FUK.bam bam (alignments) 4.0 GB
ENCFF935OTS.bigWig bigWig (minus strand signal of unique reads) 43.0 MB
ENCFF960TVS.bigWig bigWig (minus strand signal of all reads) 57.7 MB
ENCFF962VPI.bigWig bigWig (plus strand signal of all reads) 67.3 MB
ENCFF964FAE.bam bam (transcriptome alignments) 6.0 GB
ENCFF965NHM.bam bam (alignments) 3.9 GB
ENCFF970IIX.bigWig bigWig (plus strand signal of all reads) 66.0 MB
ENCFF975DAB.bigWig bigWig (minus strand signal of unique reads) 55.6 MB
ENCFF981IDX.tsv tsv (transcript quantifications) 30.0 MB
ENCSR384KAN ENCSR · via encode_api

eCLIP experiment on HepG2 against PTBP1

Homo sapiens

34 data files
FileTypeSize
ENCFF051PIE.bigWig bigWig (minus strand signal of unique reads) 18.2 MB
ENCFF052DNE.bigWig bigWig (plus strand signal of unique reads) 19.7 MB
ENCFF059MNT.bed bed (peaks) 255.0 KB
ENCFF100OEX.bed bed (peaks) 2.6 MB
ENCFF105OLG.bed bed (peaks) 853.2 KB
ENCFF130PWU.bed bed (peaks) 1.7 MB
ENCFF154BAE.bed bed (peaks) 1.8 MB
ENCFF170SCU.bed bed (peaks) 183.2 KB
ENCFF173FHO.bed bed (peaks) 334.0 KB
ENCFF176JNE.fastq fastq (reads) 568.8 MB
ENCFF216WAA.bigBed bigBed (peaks) 5.0 MB
ENCFF245YUN.bigWig bigWig (plus strand signal of unique reads) 18.9 MB
ENCFF295MQP.bam bam (alignments) 553.4 MB
ENCFF301FYI.bigBed bigBed (peaks) 5.0 MB
ENCFF320OEB.bigWig bigWig (plus strand signal of unique reads) 27.7 MB
ENCFF363UDO.bigWig bigWig (plus strand signal of unique reads) 27.1 MB
ENCFF386UIG.bam bam (alignments) 343.9 MB
ENCFF395VNE.bam bam (alignments) 364.3 MB
ENCFF471GJE.bed bed (peaks) 2.6 MB
ENCFF515WDT.fastq fastq (reads) 533.3 MB
ENCFF542ACI.bigWig bigWig (minus strand signal of unique reads) 27.1 MB
ENCFF563KDH.bigBed bigBed (peaks) 592.5 KB
ENCFF609IKI.bigWig bigWig (minus strand signal of unique reads) 19.0 MB
ENCFF689VFH.bed bed (peaks) 695.2 KB
ENCFF696ZPD.bigBed bigBed (peaks) 3.7 MB
ENCFF722NCH.bigBed bigBed (peaks) 719.7 KB
ENCFF726SQU.bed bed (peaks) 179.3 KB
ENCFF771NAP.bigBed bigBed (peaks) 1.9 MB
ENCFF786LWX.bigBed bigBed (peaks) 1.3 MB
ENCFF795DEV.bigBed bigBed (peaks) 3.6 MB
ENCFF824TZM.fastq fastq (reads) 533.4 MB
ENCFF921MMF.fastq fastq (reads) 505.3 MB
ENCFF936SHU.bigWig bigWig (minus strand signal of unique reads) 26.5 MB
ENCFF938PTT.bam bam (alignments) 569.1 MB
ENCSR315VQD ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) pulldown experiment against ZFP36

13 data files
FileTypeSize
ENCFF006ZXM.fastq fastq (reads) 497.1 MB
ENCFF089AAP.fastq fastq (reads) 463.0 MB
ENCFF113XPZ.fastq fastq (reads) 1.1 GB
ENCFF149ZPE.fastq fastq (reads) 517.0 MB
ENCFF151RNY.tsv tsv (library fraction) 1.1 MB
ENCFF170BKQ.tsv tsv (enrichment) 41.0 KB
ENCFF193EMA.tsv tsv (enrichment) 688.1 KB
ENCFF248KPL.fastq fastq (reads) 396.5 MB
ENCFF522CPG.tsv tsv (enrichment) 168.1 KB
ENCFF633DXF.tsv tsv (library fraction) 265.4 KB
ENCFF735TCL.tsv tsv (enrichment) 10.0 KB
ENCFF744DNT.tsv tsv (library fraction) 15.3 KB
ENCFF916BLW.tsv tsv (library fraction) 64.5 KB
ENCSR590QQP ENCSR · via encode_api

FUS ChIP-seq in HepG2

Homo sapiens

60 data files
FileTypeSize
ENCFF008IHB.bed bed (IDR thresholded peaks) 63.2 KB
ENCFF060IRU.bigWig bigWig (fold change over control) 616.1 MB
ENCFF089NBN.bigWig bigWig (fold change over control) 824.2 MB
ENCFF108BDL.bigWig bigWig (fold change over control) 466.7 MB
ENCFF112VKY.bed bed (peaks and background as input for IDR) 6.5 MB
ENCFF114BXG.fastq fastq (reads) 690.3 MB
ENCFF130SZQ.bam bam (alignments) 502.3 MB
ENCFF148HIM.bigWig bigWig (fold change over control) 461.4 MB
ENCFF162VZI.bigBed bigBed (peaks and background as input for IDR) 12.8 MB
ENCFF167ILJ.bigBed bigBed (optimal IDR thresholded peaks) 276.1 KB
ENCFF174TJC.bed bed (IDR thresholded peaks) 125.5 KB
ENCFF200RNY.bigBed bigBed (conservative IDR thresholded peaks) 276.9 KB
ENCFF216YZI.bed bed (optimal IDR thresholded peaks) 126.2 KB
ENCFF234BYJ.bigWig bigWig (signal p-value) 852.3 MB
ENCFF241WTA.bam bam (unfiltered alignments) 1.4 GB
ENCFF274FNN.bigWig bigWig (fold change over control) 874.9 MB
ENCFF303HBX.bam bam (alignments) 487.1 MB
ENCFF339FAD.bigWig bigWig (signal p-value) 898.5 MB
ENCFF341RZM.bed bed (IDR ranked peaks) 3.3 MB
ENCFF347XHE.bam bam (alignments) 811.5 MB
ENCFF350JXR.bigBed bigBed (peaks and background as input for IDR) 12.8 MB
ENCFF359TBC.bed bed (IDR thresholded peaks) 57.0 KB
ENCFF369FCR.bam bam (unfiltered alignments) 882.1 MB
ENCFF413PAJ.bigWig bigWig (fold change over control) 889.0 MB
ENCFF431TAL.bam bam (alignments) 784.0 MB
ENCFF442KYQ.bigBed bigBed (peaks and background as input for IDR) 12.8 MB
ENCFF453NQY.bed bed (IDR ranked peaks) 2.5 MB
ENCFF462WQI.bigBed bigBed (optimal IDR thresholded peaks) 280.0 KB
ENCFF531WXC.bigWig bigWig (signal p-value) 1002.1 MB
ENCFF571NIO.bed bed (peaks and background as input for IDR) 5.5 MB
ENCFF581OGY.bigBed bigBed (IDR thresholded peaks) 163.7 KB
ENCFF582KOD.bigBed bigBed (peaks and background as input for IDR) 12.7 MB
ENCFF599UGJ.bed bed (peaks and background as input for IDR) 5.9 MB
ENCFF611HFD.bigBed bigBed (IDR thresholded peaks) 147.8 KB
ENCFF616ZLN.fastq fastq (reads) 1.1 GB
ENCFF626OZZ.bed bed (peaks and background as input for IDR) 6.4 MB
ENCFF635GWI.bigBed bigBed (IDR thresholded peaks) 274.8 KB
ENCFF653RPC.bigBed bigBed (peaks and background as input for IDR) 12.7 MB
ENCFF682NJA.bed bed (conservative IDR thresholded peaks) 127.0 KB
ENCFF705BVI.bigWig bigWig (signal p-value) 865.3 MB
ENCFF731EAO.bigWig bigWig (signal p-value) 991.9 MB
ENCFF741JBT.bam bam (alignments) 487.7 MB
ENCFF764SIQ.bam bam (alignments) 784.7 MB
ENCFF774UVW.bed bed (peaks and background as input for IDR) 5.8 MB
ENCFF783SHE.bam bam (unfiltered alignments) 893.8 MB
ENCFF814KCX.bigWig bigWig (fold change over control) 601.6 MB
ENCFF815UVG.bigWig bigWig (fold change over control) 467.1 MB
ENCFF822DNY.bigWig bigWig (signal p-value) 768.8 MB
ENCFF861ZXZ.bed bed (IDR ranked peaks) 1.3 MB
ENCFF875TXP.bigWig bigWig (signal p-value) 1.1 GB
ENCFF888CIG.bed bed (IDR ranked peaks) 3.3 MB
ENCFF922ONM.bed bed (peaks and background as input for IDR) 5.6 MB
ENCFF925YCB.bigBed bigBed (peaks and background as input for IDR) 12.8 MB
ENCFF926CEB.bigWig bigWig (fold change over control) 635.9 MB
ENCFF934NCU.bigWig bigWig (signal p-value) 845.4 MB
ENCFF950KWC.bed bed (optimal IDR thresholded peaks) 129.5 KB
ENCFF958HCN.bam bam (unfiltered alignments) 1.4 GB
ENCFF975JLG.bigWig bigWig (signal p-value) 866.4 MB
ENCFF983UIL.bam bam (unfiltered alignments) 1.4 GB
ENCFF996GNF.bam bam (unfiltered alignments) 890.6 MB
ENCSR268DJR ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) input control experiment of EIF4G2

1 data file
FileTypeSize
ENCFF668QER.fastq fastq (reads) 361.2 MB
ENCSR278NFF ENCSR · via encode_api

RNA-seq on HepG2 cells treated with a CRISPR gRNA against CDC40. (CDC40_BGHcLV05)

Homo sapiens

92 data files
FileTypeSize
ENCFF002RIX.bigWig bigWig (plus strand signal of unique reads) 65.0 MB
ENCFF008NSM.bigWig bigWig (minus strand signal of all reads) 64.8 MB
ENCFF026AVD.bigWig bigWig (minus strand signal of unique reads) 60.4 MB
ENCFF028DYL.bigWig bigWig (plus strand signal of unique reads) 55.9 MB
ENCFF032TNF.bam bam (alignments) 5.0 GB
ENCFF033XMD.bigWig bigWig (minus strand signal of unique reads) 54.7 MB
ENCFF057EUS.bam bam (alignments) 4.1 GB
ENCFF066BCG.bam bam (transcriptome alignments) 6.2 GB
ENCFF071PFF.bigWig bigWig (minus strand signal of all reads) 71.2 MB
ENCFF071TVB.tsv tsv (gene quantifications) 9.5 MB
ENCFF078ZAX.bigWig bigWig (minus strand signal of all reads) 62.2 MB
ENCFF099KIH.bigWig bigWig (minus strand signal of unique reads) 68.7 MB
ENCFF101QNS.tsv tsv (transcript quantifications) 25.0 MB
ENCFF107IAO.tsv tsv (gene quantifications) 9.5 MB
ENCFF112ADA.tsv tsv (transcript quantifications) 25.4 MB
ENCFF114ZPN.bigWig bigWig (plus strand signal of unique reads) 70.3 MB
ENCFF119YXL.bigWig bigWig (minus strand signal of unique reads) 58.1 MB
ENCFF121PZE.bam bam (transcriptome alignments) 6.1 GB
ENCFF136DWB.bigWig bigWig (minus strand signal of all reads) 68.3 MB
ENCFF145NFU.tar tar (differential splicing quantifications) 12.1 MB
ENCFF164SNB.bigWig bigWig (minus strand signal of unique reads) 62.3 MB
ENCFF183WMD.bam bam (transcriptome alignments) 7.1 GB
ENCFF221VZK.bigWig bigWig (minus strand signal of all reads) 59.4 MB
ENCFF231SOE.fastq fastq (reads) 2.6 GB
ENCFF249ESV.bigWig bigWig (plus strand signal of all reads) 70.5 MB
ENCFF251BZG.tsv tsv (transcript quantifications) 27.2 MB
ENCFF264JUL.bam bam (alignments) 4.3 GB
ENCFF290AVB.bigWig bigWig (plus strand signal of all reads) 60.3 MB
ENCFF300BAN.bigWig bigWig (plus strand signal of all reads) 77.9 MB
ENCFF346NKS.bigWig bigWig (plus strand signal of unique reads) 69.7 MB
ENCFF387IUN.bigWig bigWig (plus strand signal of all reads) 71.2 MB
ENCFF403LFA.bigWig bigWig (minus strand signal of unique reads) 68.1 MB
ENCFF418ZYL.tsv tsv (transcript quantifications) 25.4 MB
ENCFF442JMV.bigWig bigWig (minus strand signal of unique reads) 64.4 MB
ENCFF447IDQ.bigWig bigWig (minus strand signal of all reads) 77.0 MB
ENCFF473JFS.bigWig bigWig (plus strand signal of all reads) 78.2 MB
ENCFF489ZZC.bam bam (alignments) 5.0 GB
ENCFF490JJW.bigWig bigWig (plus strand signal of unique reads) 63.7 MB
ENCFF497GUR.tsv tsv (transcript quantifications) 25.0 MB
ENCFF506KXR.bigWig bigWig (plus strand signal of unique reads) 63.9 MB
ENCFF512DWN.bigWig bigWig (plus strand signal of all reads) 63.1 MB
ENCFF528CKB.bigWig bigWig (minus strand signal of all reads) 70.2 MB
ENCFF550AEZ.bigWig bigWig (plus strand signal of unique reads) 61.7 MB
ENCFF558RUI.bigWig bigWig (minus strand signal of all reads) 76.8 MB
ENCFF559KDL.tsv tsv (gene quantifications) 9.1 MB
ENCFF562LZP.bigWig bigWig (minus strand signal of all reads) 77.0 MB
ENCFF572UPD.bigWig bigWig (minus strand signal of all reads) 63.4 MB
ENCFF579GAR.bigWig bigWig (plus strand signal of unique reads) 63.8 MB
ENCFF588RRE.fastq fastq (reads) 3.2 GB
ENCFF636DGY.bigWig bigWig (minus strand signal of all reads) 71.2 MB
ENCFF637BAX.tar tar (differential splicing quantifications) 3.1 MB
ENCFF640YRT.tsv tsv (transcript quantifications) 29.9 MB
ENCFF647PQO.tsv tsv (gene quantifications) 10.4 MB
ENCFF649DDD.bigWig bigWig (plus strand signal of all reads) 72.3 MB
ENCFF658PYM.bigWig bigWig (plus strand signal of unique reads) 69.7 MB
ENCFF681VKH.bigWig bigWig (plus strand signal of all reads) 65.7 MB
ENCFF696ZJX.bigWig bigWig (minus strand signal of unique reads) 63.7 MB
ENCFF699XIH.bigWig bigWig (plus strand signal of all reads) 72.3 MB
ENCFF705AWR.tsv tsv (transcript quantifications) 27.3 MB
ENCFF708JJQ.bigWig bigWig (minus strand signal of unique reads) 62.3 MB
ENCFF711DXS.tsv tsv (differential expression quantifications) 4.0 MB
ENCFF724QGD.tsv tsv (differential expression quantifications) 2.8 MB
ENCFF736HHZ.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF740MXN.fastq fastq (reads) 2.7 GB
ENCFF752GDH.bam bam (transcriptome alignments) 5.3 GB
ENCFF761IXF.tsv tsv (transcript quantifications) 29.9 MB
ENCFF780OQF.bigWig bigWig (minus strand signal of unique reads) 58.9 MB
ENCFF789HJB.bigWig bigWig (minus strand signal of unique reads) 62.4 MB
ENCFF800BJN.bam bam (alignments) 4.1 GB
ENCFF804XAT.bam bam (alignments) 4.1 GB
ENCFF807XRS.bigWig bigWig (minus strand signal of unique reads) 68.1 MB
ENCFF821KKM.bigWig bigWig (plus strand signal of all reads) 69.3 MB
ENCFF827LKM.bigWig bigWig (plus strand signal of unique reads) 60.3 MB
ENCFF852LIE.bam bam (alignments) 3.6 GB
ENCFF853VVB.bigWig bigWig (plus strand signal of unique reads) 59.4 MB
ENCFF867RIE.tsv tsv (differential expression quantifications) 1.8 MB
ENCFF876CBI.bam bam (alignments) 4.4 GB
ENCFF900XKJ.bam bam (alignments) 3.6 GB
ENCFF901TUB.tar tar (differential splicing quantifications) 2.8 MB
ENCFF912PWY.bigWig bigWig (plus strand signal of unique reads) 65.9 MB
ENCFF926ISG.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF930PYM.fastq fastq (reads) 3.1 GB
ENCFF931MFO.bam bam (transcriptome alignments) 6.2 GB
ENCFF935IAS.bam bam (transcriptome alignments) 5.3 GB
ENCFF937DHM.bam bam (alignments) 3.6 GB
ENCFF962OTV.tsv tsv (gene quantifications) 9.1 MB
ENCFF966UMX.bam bam (alignments) 5.0 GB
ENCFF968WLH.bam bam (alignments) 4.4 GB
ENCFF981KPG.tsv tsv (gene quantifications) 10.4 MB
ENCFF986OYP.bigWig bigWig (plus strand signal of all reads) 78.2 MB
ENCFF987RMH.bigWig bigWig (plus strand signal of all reads) 64.4 MB
ENCFF997WNF.bigWig bigWig (minus strand signal of all reads) 69.3 MB
ENCSR866URJ ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) input control experiment of A1CF and ZFP36

1 data file
FileTypeSize
ENCFF689ELM.fastq fastq (reads) 293.6 MB
ENCSR778WPL ENCSR · via encode_api

RNA-seq on K562 cells treated with an shRNA knockdown against HNRNPAB. (HNRNPAB_BGKLV24_B)

Homo sapiens

92 data files
FileTypeSize
ENCFF041UDY.tsv tsv (gene quantifications) 9.5 MB
ENCFF053HJJ.bigWig bigWig (minus strand signal of unique reads) 88.7 MB
ENCFF054ZEU.bigWig bigWig (minus strand signal of unique reads) 104.1 MB
ENCFF078DQE.bam bam (alignments) 5.7 GB
ENCFF081IUU.bam bam (alignments) 7.4 GB
ENCFF083JJE.bam bam (alignments) 7.4 GB
ENCFF091UHY.bigWig bigWig (plus strand signal of unique reads) 107.4 MB
ENCFF105DRC.tsv tsv (gene quantifications) 10.4 MB
ENCFF113ABD.tsv tsv (gene quantifications) 9.1 MB
ENCFF115CQE.bigWig bigWig (plus strand signal of unique reads) 93.7 MB
ENCFF118NMW.bigWig bigWig (plus strand signal of all reads) 106.8 MB
ENCFF121LEK.bigWig bigWig (plus strand signal of unique reads) 98.5 MB
ENCFF123PFE.bigWig bigWig (plus strand signal of unique reads) 97.8 MB
ENCFF142IHB.bigWig bigWig (plus strand signal of unique reads) 99.0 MB
ENCFF150URF.bam bam (transcriptome alignments) 7.7 GB
ENCFF183RDA.bigWig bigWig (minus strand signal of all reads) 98.5 MB
ENCFF188IJJ.bam bam (alignments) 7.2 GB
ENCFF188MHU.bigWig bigWig (minus strand signal of unique reads) 104.6 MB
ENCFF199GIA.bigWig bigWig (plus strand signal of all reads) 118.8 MB
ENCFF205KQN.bigWig bigWig (plus strand signal of unique reads) 106.8 MB
ENCFF207CMV.bigWig bigWig (plus strand signal of all reads) 100.3 MB
ENCFF220OIO.bigWig bigWig (plus strand signal of all reads) 120.5 MB
ENCFF231JFH.bam bam (alignments) 5.7 GB
ENCFF256RTT.bigWig bigWig (minus strand signal of all reads) 99.1 MB
ENCFF264MZU.bigWig bigWig (plus strand signal of all reads) 100.9 MB
ENCFF285LMI.bigWig bigWig (plus strand signal of unique reads) 105.4 MB
ENCFF297KPN.tar tar (differential splicing quantifications) 16.3 MB
ENCFF298LWW.tsv tsv (transcript quantifications) 25.4 MB
ENCFF301PIJ.bigWig bigWig (minus strand signal of all reads) 106.3 MB
ENCFF313ESW.tsv tsv (transcript quantifications) 25.4 MB
ENCFF313XOT.tsv tsv (differential expression quantifications) 4.3 MB
ENCFF319MJT.bam bam (alignments) 7.4 GB
ENCFF321RKI.bigWig bigWig (minus strand signal of unique reads) 104.2 MB
ENCFF329EXC.tar tar (differential splicing quantifications) 3.9 MB
ENCFF330SWN.bigWig bigWig (minus strand signal of unique reads) 95.2 MB
ENCFF351LMN.bigWig bigWig (plus strand signal of all reads) 117.4 MB
ENCFF352LGS.bigWig bigWig (plus strand signal of all reads) 118.9 MB
ENCFF359PXZ.bigWig bigWig (minus strand signal of unique reads) 96.4 MB
ENCFF409NRX.tsv tsv (gene quantifications) 9.5 MB
ENCFF409PSL.bigWig bigWig (minus strand signal of all reads) 117.5 MB
ENCFF412EHQ.bigWig bigWig (plus strand signal of all reads) 108.3 MB
ENCFF413QMC.bam bam (transcriptome alignments) 7.8 GB
ENCFF423MFF.bigWig bigWig (plus strand signal of all reads) 104.1 MB
ENCFF435YSS.bigWig bigWig (minus strand signal of all reads) 115.9 MB
ENCFF443SLE.tsv tsv (transcript quantifications) 27.4 MB
ENCFF497KEG.bigWig bigWig (minus strand signal of unique reads) 102.9 MB
ENCFF503PMK.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF508QGQ.bam bam (alignments) 6.1 GB
ENCFF527LLB.bigWig bigWig (plus strand signal of all reads) 104.7 MB
ENCFF529JWT.bam bam (transcriptome alignments) 7.9 GB
ENCFF532YII.bigWig bigWig (minus strand signal of all reads) 103.3 MB
ENCFF538QWC.bam bam (transcriptome alignments) 7.6 GB
ENCFF550GQO.tsv tsv (gene quantifications) 10.4 MB
ENCFF557CDP.bigWig bigWig (plus strand signal of all reads) 120.5 MB
ENCFF590HAH.bam bam (alignments) 6.9 GB
ENCFF615OGG.bam bam (alignments) 6.0 GB
ENCFF624JBL.bam bam (transcriptome alignments) 8.7 GB
ENCFF630IDR.tsv tsv (differential expression quantifications) 2.0 MB
ENCFF631LTP.bam bam (alignments) 6.0 GB
ENCFF632NXF.tsv tsv (transcript quantifications) 29.9 MB
ENCFF636PWZ.tsv tsv (differential expression quantifications) 2.8 MB
ENCFF647OAM.tsv tsv (gene quantifications) 9.1 MB
ENCFF654GQP.tsv tsv (transcript quantifications) 27.5 MB
ENCFF673OAS.bam bam (alignments) 7.4 GB
ENCFF673YJC.bigWig bigWig (plus strand signal of unique reads) 105.4 MB
ENCFF698GCF.bigWig bigWig (minus strand signal of all reads) 115.6 MB
ENCFF742HTZ.fastq fastq (reads) 4.1 GB
ENCFF745NIS.bigWig bigWig (plus strand signal of unique reads) 97.2 MB
ENCFF749TNL.bigWig bigWig (plus strand signal of unique reads) 106.7 MB
ENCFF752OCY.bigWig bigWig (minus strand signal of unique reads) 96.2 MB
ENCFF757TZI.bigWig bigWig (minus strand signal of all reads) 102.8 MB
ENCFF792QAB.fastq fastq (reads) 3.9 GB
ENCFF803IAI.fastq fastq (reads) 4.1 GB
ENCFF812ETN.bam bam (alignments) 6.0 GB
ENCFF812HEU.bigWig bigWig (minus strand signal of unique reads) 103.1 MB
ENCFF824ZEX.bigWig bigWig (plus strand signal of unique reads) 91.0 MB
ENCFF833IRD.bigWig bigWig (minus strand signal of all reads) 104.9 MB
ENCFF835JTH.bigWig bigWig (minus strand signal of all reads) 117.5 MB
ENCFF835ZPL.bigWig bigWig (minus strand signal of unique reads) 95.4 MB
ENCFF869AVG.bigWig bigWig (minus strand signal of all reads) 118.9 MB
ENCFF872JLV.tsv tsv (differential expression quantifications) 5.7 MB
ENCFF875NCB.tsv tsv (transcript quantifications) 25.0 MB
ENCFF877ZFC.tar tar (differential splicing quantifications) 4.7 MB
ENCFF892CDS.bigWig bigWig (minus strand signal of unique reads) 103.1 MB
ENCFF905FFU.bigWig bigWig (minus strand signal of all reads) 118.9 MB
ENCFF908NAD.tsv tsv (transcript quantifications) 29.9 MB
ENCFF918HYA.bigWig bigWig (plus strand signal of all reads) 117.0 MB
ENCFF945NLM.bam bam (transcriptome alignments) 8.9 GB
ENCFF970NNA.tsv tsv (transcript quantifications) 25.0 MB
ENCFF976MFI.bigWig bigWig (plus strand signal of unique reads) 105.3 MB
ENCFF992JMW.fastq fastq (reads) 3.9 GB
ENCFF999TOL.bigWig bigWig (minus strand signal of unique reads) 91.2 MB
ENCSR081WUU ENCSR · via encode_api

eCLIP control experiment on HepG2 against TBRG4

Homo sapiens

8 data files
FileTypeSize
ENCFF082JCZ.bam bam (alignments) 458.3 MB
ENCFF102ZRL.bigWig bigWig (plus strand signal of unique reads) 20.8 MB
ENCFF228SIR.bigWig bigWig (minus strand signal of unique reads) 20.4 MB
ENCFF312KNQ.fastq fastq (reads) 656.1 MB
ENCFF384XQK.bigWig bigWig (minus strand signal of unique reads) 20.6 MB
ENCFF438RDQ.bigWig bigWig (plus strand signal of unique reads) 21.1 MB
ENCFF727FEM.fastq fastq (reads) 688.8 MB
ENCFF949QUQ.bam bam (alignments) 465.0 MB
ENCSR207DWI ENCSR · via encode_api

eCLIP control experiment on K562 against DDX6

Homo sapiens

8 data files
FileTypeSize
ENCFF157LAQ.bigWig bigWig (minus strand signal of unique reads) 22.1 MB
ENCFF162THS.bigWig bigWig (plus strand signal of unique reads) 22.5 MB
ENCFF301TAX.fastq fastq (reads) 651.9 MB
ENCFF398FVI.bigWig bigWig (plus strand signal of unique reads) 22.9 MB
ENCFF510SNL.fastq fastq (reads) 607.3 MB
ENCFF593SPI.bam bam (alignments) 492.2 MB
ENCFF604TNC.bigWig bigWig (minus strand signal of unique reads) 21.7 MB
ENCFF982ORK.bam bam (alignments) 484.3 MB
ENCSR997HCQ ENCSR · via encode_api

Control shRNA against no target in HepG2 cells followed by RNA-seq. (NT_BGHLV37)

Homo sapiens

84 data files
FileTypeSize
ENCFF025JMC.tsv tsv (transcript quantifications) 29.8 MB
ENCFF032UOF.bigWig bigWig (plus strand signal of all reads) 121.3 MB
ENCFF053BGL.bam bam (transcriptome alignments) 8.6 GB
ENCFF059TNE.bigWig bigWig (plus strand signal of all reads) 108.0 MB
ENCFF089WUE.bam bam (transcriptome alignments) 9.8 GB
ENCFF101YUV.bigWig bigWig (plus strand signal of all reads) 109.7 MB
ENCFF155WDM.tsv tsv (transcript quantifications) 25.3 MB
ENCFF179JRD.bigWig bigWig (plus strand signal of all reads) 119.4 MB
ENCFF184GIZ.bigWig bigWig (minus strand signal of all reads) 94.8 MB
ENCFF210CQX.fastq fastq (reads) 3.7 GB
ENCFF213OYU.tsv tsv (transcript quantifications) 25.3 MB
ENCFF218JVW.bam bam (alignments) 5.4 GB
ENCFF229XSO.bigWig bigWig (minus strand signal of unique reads) 98.4 MB
ENCFF237CIF.tsv tsv (transcript quantifications) 24.9 MB
ENCFF262XVI.bigWig bigWig (plus strand signal of unique reads) 90.6 MB
ENCFF264PIV.tsv tsv (gene quantifications) 9.1 MB
ENCFF284NQQ.bam bam (alignments) 6.9 GB
ENCFF288PJK.tsv tsv (transcript quantifications) 29.8 MB
ENCFF289TTH.bam bam (alignments) 6.1 GB
ENCFF293GBJ.bam bam (alignments) 6.9 GB
ENCFF295GVT.fastq fastq (reads) 3.0 GB
ENCFF300WLB.bigWig bigWig (plus strand signal of all reads) 96.6 MB
ENCFF301KRL.bam bam (alignments) 4.5 GB
ENCFF302QFF.bigWig bigWig (minus strand signal of all reads) 117.5 MB
ENCFF312QUH.bigWig bigWig (plus strand signal of unique reads) 95.3 MB
ENCFF340UAV.bam bam (alignments) 5.4 GB
ENCFF343MBV.bam bam (transcriptome alignments) 7.8 GB
ENCFF367OZA.bigWig bigWig (minus strand signal of all reads) 103.4 MB
ENCFF369XPM.bigWig bigWig (plus strand signal of unique reads) 94.4 MB
ENCFF371CGJ.tsv tsv (gene quantifications) 9.5 MB
ENCFF376QRC.tsv tsv (gene quantifications) 10.4 MB
ENCFF388JRA.bigWig bigWig (minus strand signal of all reads) 108.5 MB
ENCFF412FMI.bigWig bigWig (minus strand signal of unique reads) 92.8 MB
ENCFF446DXB.bam bam (transcriptome alignments) 6.9 GB
ENCFF447YTB.fastq fastq (reads) 3.8 GB
ENCFF455GZZ.bigWig bigWig (plus strand signal of unique reads) 101.3 MB
ENCFF476WQF.tsv tsv (transcript quantifications) 24.9 MB
ENCFF492NEQ.bigWig bigWig (plus strand signal of all reads) 105.3 MB
ENCFF501FZL.bigWig bigWig (minus strand signal of all reads) 90.5 MB
ENCFF503BDP.bigWig bigWig (plus strand signal of unique reads) 89.8 MB
ENCFF515ZFQ.bam bam (alignments) 5.4 GB
ENCFF531XRD.bigWig bigWig (minus strand signal of unique reads) 83.8 MB
ENCFF535HAE.bigWig bigWig (plus strand signal of all reads) 104.2 MB
ENCFF549QYR.bam bam (transcriptome alignments) 8.7 GB
ENCFF576CFY.bam bam (transcriptome alignments) 6.9 GB
ENCFF576DOV.bigWig bigWig (minus strand signal of unique reads) 92.8 MB
ENCFF578PLH.bigWig bigWig (minus strand signal of unique reads) 100.7 MB
ENCFF608RZP.bigWig bigWig (plus strand signal of all reads) 95.0 MB
ENCFF615BLF.bigWig bigWig (plus strand signal of unique reads) 108.8 MB
ENCFF627EXU.bam bam (alignments) 4.9 GB
ENCFF629QVO.tsv tsv (gene quantifications) 9.5 MB
ENCFF653VIH.tsv tsv (gene quantifications) 9.1 MB
ENCFF655FHK.bigWig bigWig (minus strand signal of unique reads) 106.8 MB
ENCFF658CBH.bigWig bigWig (plus strand signal of all reads) 92.4 MB
ENCFF681ZDT.bigWig bigWig (plus strand signal of all reads) 121.3 MB
ENCFF687GLB.bigWig bigWig (minus strand signal of all reads) 93.3 MB
ENCFF694OZB.bigWig bigWig (minus strand signal of unique reads) 91.8 MB
ENCFF700OMB.tsv tsv (transcript quantifications) 27.5 MB
ENCFF715VOF.bam bam (alignments) 4.5 GB
ENCFF721DFL.bigWig bigWig (minus strand signal of unique reads) 106.8 MB
ENCFF721LTT.bigWig bigWig (plus strand signal of unique reads) 109.7 MB
ENCFF740YCP.bigWig bigWig (plus strand signal of all reads) 110.7 MB
ENCFF742NXL.bam bam (alignments) 6.6 GB
ENCFF743VBJ.tsv tsv (transcript quantifications) 27.4 MB
ENCFF758WDL.bigWig bigWig (minus strand signal of unique reads) 105.9 MB
ENCFF759WMD.bam bam (alignments) 5.6 GB
ENCFF762AUC.bigWig bigWig (minus strand signal of unique reads) 88.1 MB
ENCFF773TMT.bigWig bigWig (plus strand signal of unique reads) 109.8 MB
ENCFF780QZR.bigWig bigWig (minus strand signal of all reads) 107.7 MB
ENCFF826BDN.bigWig bigWig (plus strand signal of unique reads) 103.6 MB
ENCFF839SFE.bigWig bigWig (plus strand signal of unique reads) 86.4 MB
ENCFF840PQM.bigWig bigWig (minus strand signal of unique reads) 100.9 MB
ENCFF865CTG.bigWig bigWig (plus strand signal of unique reads) 95.3 MB
ENCFF872SME.bigWig bigWig (plus strand signal of unique reads) 103.6 MB
ENCFF878EDX.tsv tsv (gene quantifications) 10.4 MB
ENCFF897ZQR.bigWig bigWig (minus strand signal of all reads) 119.2 MB
ENCFF915EEM.bigWig bigWig (plus strand signal of all reads) 105.3 MB
ENCFF963HGT.bigWig bigWig (minus strand signal of all reads) 105.8 MB
ENCFF967ZLN.bigWig bigWig (minus strand signal of all reads) 119.2 MB
ENCFF968FLX.bigWig bigWig (minus strand signal of all reads) 102.6 MB
ENCFF970TJC.bigWig bigWig (minus strand signal of all reads) 103.5 MB
ENCFF970XPJ.fastq fastq (reads) 3.1 GB
ENCFF996GEV.bam bam (alignments) 6.1 GB
ENCFF997HBA.bigWig bigWig (minus strand signal of unique reads) 87.6 MB
ENCSR506EIW ENCSR · via encode_api

eCLIP control experiment on HepG2 against SFPQ

Homo sapiens

8 data files
FileTypeSize
ENCFF017QIP.bigWig bigWig (plus strand signal of unique reads) 27.5 MB
ENCFF163HDX.fastq fastq (reads) 538.7 MB
ENCFF257DFX.bigWig bigWig (minus strand signal of unique reads) 27.7 MB
ENCFF302WLD.bigWig bigWig (plus strand signal of unique reads) 28.0 MB
ENCFF526FTD.fastq fastq (reads) 575.6 MB
ENCFF750AIQ.bigWig bigWig (minus strand signal of unique reads) 26.9 MB
ENCFF839ZIO.bam bam (alignments) 615.3 MB
ENCFF949MMS.bam bam (alignments) 627.2 MB
ENCSR308RMD ENCSR · via encode_api

eCLIP control experiment on K562 against EXOSC5

Homo sapiens

8 data files
FileTypeSize
ENCFF044BSI.bam bam (alignments) 336.1 MB
ENCFF156NIJ.fastq fastq (reads) 686.6 MB
ENCFF243MGY.bigWig bigWig (minus strand signal of unique reads) 18.2 MB
ENCFF332UNI.bam bam (alignments) 339.7 MB
ENCFF339YTF.bigWig bigWig (plus strand signal of unique reads) 18.9 MB
ENCFF577TAB.fastq fastq (reads) 620.7 MB
ENCFF885TCI.bigWig bigWig (minus strand signal of unique reads) 17.9 MB
ENCFF921KOH.bigWig bigWig (plus strand signal of unique reads) 18.6 MB
ENCSR076PMZ ENCSR · via encode_api

RNA-seq on K562 cells treated with an shRNA knockdown against EIF2S2. (EIF2S2_BGKLV29-B)

Homo sapiens

92 data files
FileTypeSize
ENCFF019RLO.bigWig bigWig (minus strand signal of all reads) 90.2 MB
ENCFF029EPV.tsv tsv (differential expression quantifications) 2.0 MB
ENCFF045QEZ.bam bam (alignments) 3.4 GB
ENCFF051PHU.bigWig bigWig (plus strand signal of unique reads) 89.7 MB
ENCFF055UPB.bam bam (transcriptome alignments) 6.4 GB
ENCFF072KXJ.tsv tsv (transcript quantifications) 25.3 MB
ENCFF074SEG.bam bam (transcriptome alignments) 5.6 GB
ENCFF075YXM.bigWig bigWig (minus strand signal of unique reads) 82.4 MB
ENCFF096IJA.bigWig bigWig (minus strand signal of unique reads) 81.8 MB
ENCFF096SIE.tar tar (differential splicing quantifications) 5.0 MB
ENCFF148TNV.bigWig bigWig (plus strand signal of all reads) 89.1 MB
ENCFF153VYI.bam bam (alignments) 4.4 GB
ENCFF157YYW.bigWig bigWig (minus strand signal of unique reads) 88.0 MB
ENCFF193BDH.tsv tsv (gene quantifications) 10.4 MB
ENCFF193KCG.bigWig bigWig (plus strand signal of unique reads) 84.1 MB
ENCFF196NLV.tsv tsv (differential expression quantifications) 4.4 MB
ENCFF200VTR.bam bam (alignments) 4.4 GB
ENCFF208KLS.tsv tsv (transcript quantifications) 29.8 MB
ENCFF219CKG.bigWig bigWig (plus strand signal of all reads) 100.0 MB
ENCFF239BVI.tsv tsv (gene quantifications) 9.5 MB
ENCFF240TLC.bigWig bigWig (minus strand signal of unique reads) 86.7 MB
ENCFF242MPV.bigWig bigWig (plus strand signal of all reads) 89.2 MB
ENCFF246ODU.bigWig bigWig (minus strand signal of all reads) 100.5 MB
ENCFF252BLF.bigWig bigWig (minus strand signal of all reads) 99.0 MB
ENCFF255LPT.tsv tsv (transcript quantifications) 29.8 MB
ENCFF262VCV.bigWig bigWig (plus strand signal of all reads) 92.5 MB
ENCFF282NGD.tsv tsv (transcript quantifications) 27.4 MB
ENCFF297SVV.bigWig bigWig (minus strand signal of all reads) 88.2 MB
ENCFF301DIS.tsv tsv (transcript quantifications) 27.4 MB
ENCFF317PKU.bigWig bigWig (minus strand signal of all reads) 100.5 MB
ENCFF318CTJ.bigWig bigWig (plus strand signal of all reads) 91.6 MB
ENCFF334ZLC.bam bam (alignments) 3.5 GB
ENCFF339SPH.bigWig bigWig (minus strand signal of all reads) 99.0 MB
ENCFF341YAD.bigWig bigWig (minus strand signal of all reads) 97.3 MB
ENCFF345MTL.bigWig bigWig (minus strand signal of unique reads) 87.1 MB
ENCFF393DRT.bigWig bigWig (minus strand signal of all reads) 87.5 MB
ENCFF407LYY.bigWig bigWig (minus strand signal of unique reads) 87.0 MB
ENCFF423UHB.bigWig bigWig (plus strand signal of unique reads) 83.6 MB
ENCFF439RHI.tsv tsv (transcript quantifications) 24.9 MB
ENCFF446FEY.bigWig bigWig (minus strand signal of unique reads) 87.6 MB
ENCFF451ATD.bam bam (transcriptome alignments) 5.7 GB
ENCFF467GJR.tsv tsv (transcript quantifications) 24.9 MB
ENCFF469OZF.bigWig bigWig (plus strand signal of all reads) 101.5 MB
ENCFF472TGQ.bigWig bigWig (plus strand signal of all reads) 101.5 MB
ENCFF484PRX.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF490FLH.bam bam (alignments) 4.3 GB
ENCFF509VXH.tsv tsv (gene quantifications) 9.1 MB
ENCFF528CLC.bigWig bigWig (plus strand signal of unique reads) 81.2 MB
ENCFF537EIB.fastq fastq (reads) 2.4 GB
ENCFF563QSQ.tsv tsv (transcript quantifications) 25.3 MB
ENCFF579ZTR.bigWig bigWig (plus strand signal of unique reads) 88.8 MB
ENCFF581JNU.bigWig bigWig (minus strand signal of unique reads) 79.8 MB
ENCFF582IVK.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF611IYB.fastq fastq (reads) 2.5 GB
ENCFF612DRF.bam bam (alignments) 3.4 GB
ENCFF621OZF.bigWig bigWig (plus strand signal of unique reads) 84.2 MB
ENCFF630JXE.bam bam (transcriptome alignments) 5.6 GB
ENCFF632JQT.bam bam (alignments) 4.3 GB
ENCFF641YNV.bigWig bigWig (minus strand signal of all reads) 91.1 MB
ENCFF648TGB.fastq fastq (reads) 2.4 GB
ENCFF652HHU.tsv tsv (gene quantifications) 10.4 MB
ENCFF662CNR.bam bam (alignments) 3.5 GB
ENCFF668XVS.bigWig bigWig (plus strand signal of unique reads) 88.9 MB
ENCFF679YQT.tsv tsv (gene quantifications) 9.5 MB
ENCFF686LKD.bam bam (alignments) 4.3 GB
ENCFF687XQG.bam bam (alignments) 4.2 GB
ENCFF692SUN.bigWig bigWig (minus strand signal of unique reads) 82.1 MB
ENCFF697HSL.bigWig bigWig (plus strand signal of all reads) 88.7 MB
ENCFF705NOX.bigWig bigWig (plus strand signal of unique reads) 88.4 MB
ENCFF715MBO.bigWig bigWig (plus strand signal of all reads) 100.0 MB
ENCFF724MCS.bam bam (transcriptome alignments) 5.8 GB
ENCFF727EXZ.bigWig bigWig (plus strand signal of unique reads) 83.3 MB
ENCFF751ZEN.bam bam (alignments) 3.4 GB
ENCFF761IIZ.bigWig bigWig (plus strand signal of unique reads) 89.8 MB
ENCFF773GMC.bigWig bigWig (plus strand signal of all reads) 88.5 MB
ENCFF776NPG.tsv tsv (gene quantifications) 9.1 MB
ENCFF798NHG.bigWig bigWig (plus strand signal of all reads) 100.0 MB
ENCFF811GDA.bigWig bigWig (plus strand signal of all reads) 98.3 MB
ENCFF853RXJ.bam bam (transcriptome alignments) 6.6 GB
ENCFF870BBA.bigWig bigWig (minus strand signal of unique reads) 88.0 MB
ENCFF920GKP.bigWig bigWig (plus strand signal of unique reads) 89.5 MB
ENCFF931RYO.tar tar (differential splicing quantifications) 4.2 MB
ENCFF932YTP.bigWig bigWig (plus strand signal of unique reads) 81.9 MB
ENCFF933FGQ.bigWig bigWig (minus strand signal of unique reads) 82.2 MB
ENCFF939TVP.bigWig bigWig (minus strand signal of all reads) 99.0 MB
ENCFF961ASP.bigWig bigWig (minus strand signal of all reads) 87.7 MB
ENCFF968ALK.tar tar (differential splicing quantifications) 16.9 MB
ENCFF975VAO.bigWig bigWig (minus strand signal of unique reads) 79.3 MB
ENCFF985PWH.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF988QUT.bam bam (alignments) 3.5 GB
ENCFF990LNB.fastq fastq (reads) 2.4 GB
ENCFF992TEK.bigWig bigWig (minus strand signal of all reads) 87.3 MB
ENCSR177DNR ENCSR · via encode_api

FIP1L1 ChIP-seq in K562

Homo sapiens

65 data files
FileTypeSize
ENCFF002WKI.bigBed bigBed (optimal IDR thresholded peaks) 392.2 KB
ENCFF019GXB.bigWig bigWig (fold change over control) 356.1 MB
ENCFF020OCJ.bed bed (conservative IDR thresholded peaks) 158.0 KB
ENCFF022EQI.bed bed (IDR thresholded peaks) 76.6 KB
ENCFF035WSF.bigBed bigBed (IDR thresholded peaks) 188.4 KB
ENCFF066UXJ.bigWig bigWig (signal p-value) 497.1 MB
ENCFF080PPI.bam bam (alignments) 366.7 MB
ENCFF084DTV.bed bed (optimal IDR thresholded peaks) 173.5 KB
ENCFF105YIV.bed bed (conservative IDR thresholded peaks) 168.1 KB
ENCFF108CPW.bigBed bigBed (optimal IDR thresholded peaks) 397.7 KB
ENCFF125ALM.bigWig bigWig (fold change over control) 506.8 MB
ENCFF149TIO.bam bam (unfiltered alignments) 1.1 GB
ENCFF175KKB.bigBed bigBed (peaks and background as input for IDR) 12.5 MB
ENCFF186XHH.bigWig bigWig (fold change over control) 312.3 MB
ENCFF201OXE.bigBed bigBed (conservative IDR thresholded peaks) 365.9 KB
ENCFF204CKY.bed bed (IDR ranked peaks) 3.6 MB
ENCFF255AOS.bed bed (peaks and background as input for IDR) 5.5 MB
ENCFF258VXR.bam bam (alignments) 439.4 MB
ENCFF272ULK.bed bed (peaks and background as input for IDR) 5.5 MB
ENCFF285TMA.bed bed (IDR thresholded peaks) 175.2 KB
ENCFF300QTI.bam bam (alignments) 439.9 MB
ENCFF339HLR.bed bed (peaks and background as input for IDR) 5.4 MB
ENCFF340TJZ.bam bam (unfiltered alignments) 1.1 GB
ENCFF341OFU.bed bed (peaks and background as input for IDR) 6.5 MB
ENCFF354QUL.bed bed (peaks and background as input for IDR) 5.4 MB
ENCFF358WGP.bigWig bigWig (signal p-value) 909.8 MB
ENCFF362ZTW.bed bed (conservative IDR thresholded peaks) 158.3 KB
ENCFF363ZMN.bigBed bigBed (IDR thresholded peaks) 393.2 KB
ENCFF377LTD.bigWig bigWig (fold change over control) 789.8 MB
ENCFF380RZX.bam bam (unfiltered alignments) 654.7 MB
ENCFF389QKE.bed bed (IDR thresholded peaks) 76.2 KB
ENCFF428XVA.fastq fastq (reads) 483.1 MB
ENCFF444PRG.bigWig bigWig (signal p-value) 456.3 MB
ENCFF446VRE.bed bed (IDR ranked peaks) 1.8 MB
ENCFF447CUF.bigWig bigWig (fold change over control) 353.5 MB
ENCFF449FJO.bigWig bigWig (signal p-value) 505.0 MB
ENCFF461WCG.bigWig bigWig (signal p-value) 866.2 MB
ENCFF478JBB.bigBed bigBed (conservative IDR thresholded peaks) 367.5 KB
ENCFF479RSN.bigWig bigWig (signal p-value) 537.6 MB
ENCFF506LKI.bigBed bigBed (peaks and background as input for IDR) 12.7 MB
ENCFF512GCO.bam bam (unfiltered alignments) 652.6 MB
ENCFF531AUS.fastq fastq (reads) 653.9 MB
ENCFF587CDK.bigBed bigBed (peaks and background as input for IDR) 12.5 MB
ENCFF591OBR.bam bam (unfiltered alignments) 642.9 MB
ENCFF609SGB.bigBed bigBed (peaks and background as input for IDR) 12.6 MB
ENCFF616OHG.bigWig bigWig (fold change over control) 788.9 MB
ENCFF640GRS.bigBed bigBed (peaks and background as input for IDR) 12.6 MB
ENCFF643XEC.bigWig bigWig (signal p-value) 825.2 MB
ENCFF663TOC.bigWig bigWig (fold change over control) 312.8 MB
ENCFF713HMY.bam bam (alignments) 382.8 MB
ENCFF714YZY.bigWig bigWig (fold change over control) 795.4 MB
ENCFF715VWF.bigBed bigBed (peaks and background as input for IDR) 12.6 MB
ENCFF724HOV.fastq fastq (reads) 462.0 MB
ENCFF733MYF.bed bed (IDR ranked peaks) 3.8 MB
ENCFF778DEZ.bigBed bigBed (IDR thresholded peaks) 218.7 KB
ENCFF779QNK.bed bed (IDR ranked peaks) 1.7 MB
ENCFF800KZC.bed bed (peaks and background as input for IDR) 6.4 MB
ENCFF825FAV.bam bam (alignments) 454.1 MB
ENCFF829CKY.bam bam (unfiltered alignments) 1.0 GB
ENCFF836QJL.bigWig bigWig (signal p-value) 1.0 GB
ENCFF867SMR.bigWig bigWig (signal p-value) 881.3 MB
ENCFF868GGK.bigWig bigWig (fold change over control) 449.3 MB
ENCFF883WYX.bed bed (optimal IDR thresholded peaks) 178.7 KB
ENCFF951VMN.bam bam (alignments) 367.2 MB
ENCFF982BGT.bigBed bigBed (conservative IDR thresholded peaks) 381.9 KB
ENCSR835ZOK ENCSR · via encode_api

eCLIP control experiment on HepG2 against GRWD1

Homo sapiens

8 data files
FileTypeSize
ENCFF112YNS.bigWig bigWig (plus strand signal of unique reads) 26.4 MB
ENCFF138IDT.fastq fastq (reads) 651.6 MB
ENCFF305DED.fastq fastq (reads) 685.1 MB
ENCFF403RNH.bam bam (alignments) 588.4 MB
ENCFF677YGL.bigWig bigWig (plus strand signal of unique reads) 26.7 MB
ENCFF732COU.bigWig bigWig (minus strand signal of unique reads) 26.6 MB
ENCFF842JTZ.bigWig bigWig (minus strand signal of unique reads) 25.9 MB
ENCFF950JUB.bam bam (alignments) 597.0 MB
ENCSR464FDA ENCSR · via encode_api

Control ChIP-seq in K562

Homo sapiens

14 data files
FileTypeSize
ENCFF036CVA.bam bam (unfiltered alignments) 4.2 GB
ENCFF180IWG.bam bam (unfiltered alignments) 3.7 GB
ENCFF244AKW.bam bam (unfiltered alignments) 3.7 GB
ENCFF248LWZ.bam bam (alignments) 2.6 GB
ENCFF280NBI.bam bam (alignments) 2.0 GB
ENCFF308OKT.bam bam (unfiltered alignments) 3.8 GB
ENCFF318ZTK.fastq fastq (reads) 3.1 GB
ENCFF331RXU.fastq fastq (reads) 2.7 GB
ENCFF350QUB.bam bam (alignments) 2.3 GB
ENCFF388TPI.bam bam (alignments) 2.3 GB
ENCFF461ODQ.bam bam (alignments) 2.3 GB
ENCFF466QHR.bam bam (alignments) 2.6 GB
ENCFF645NJV.bam bam (unfiltered alignments) 4.4 GB
ENCFF935BYD.bam bam (unfiltered alignments) 4.1 GB
ENCSR923UTX ENCSR · via encode_api

NONO ChIP-seq in HepG2

Homo sapiens

64 data files
FileTypeSize
ENCFF012XLX.bigBed bigBed (peaks and background as input for IDR) 12.6 MB
ENCFF015NAT.bigBed bigBed (conservative IDR thresholded peaks) 753.4 KB
ENCFF029PWP.bam bam (unfiltered alignments) 686.2 MB
ENCFF036EJP.bigBed bigBed (IDR thresholded peaks) 589.6 KB
ENCFF051JXD.bigBed bigBed (peaks and background as input for IDR) 12.7 MB
ENCFF056SXW.bam bam (alignments) 382.0 MB
ENCFF082IPY.bigWig bigWig (fold change over control) 663.7 MB
ENCFF083HJH.bigWig bigWig (signal p-value) 670.5 MB
ENCFF084MVF.bigWig bigWig (fold change over control) 407.9 MB
ENCFF106QSR.bed bed (peaks and background as input for IDR) 6.3 MB
ENCFF144SDE.fastq fastq (reads) 508.8 MB
ENCFF167NLG.bed bed (IDR ranked peaks) 1.7 MB
ENCFF170DYF.bed bed (peaks and background as input for IDR) 5.6 MB
ENCFF199GND.bed bed (optimal IDR thresholded peaks) 354.4 KB
ENCFF203BSP.bam bam (unfiltered alignments) 646.5 MB
ENCFF205NPO.bed bed (conservative IDR thresholded peaks) 344.2 KB
ENCFF236VKH.bigWig bigWig (fold change over control) 662.8 MB
ENCFF246YPT.bed bed (peaks and background as input for IDR) 6.3 MB
ENCFF302AXJ.bigWig bigWig (fold change over control) 429.8 MB
ENCFF303TZL.bigWig bigWig (signal p-value) 790.0 MB
ENCFF313ACY.bigBed bigBed (optimal IDR thresholded peaks) 763.0 KB
ENCFF344DWM.bigBed bigBed (peaks and background as input for IDR) 12.7 MB
ENCFF358JCZ.bigWig bigWig (fold change over control) 417.2 MB
ENCFF360JLK.bam bam (unfiltered alignments) 649.8 MB
ENCFF414YCE.bam bam (alignments) 396.0 MB
ENCFF420QKI.bed bed (optimal IDR thresholded peaks) 350.7 KB
ENCFF426HGE.bigWig bigWig (signal p-value) 655.2 MB
ENCFF434HRW.bed bed (IDR ranked peaks) 2.0 MB
ENCFF443FUK.bigBed bigBed (IDR thresholded peaks) 690.2 KB
ENCFF461NYX.bed bed (peaks and background as input for IDR) 5.5 MB
ENCFF464FBN.bigWig bigWig (fold change over control) 405.6 MB
ENCFF500RQY.bigBed bigBed (conservative IDR thresholded peaks) 736.8 KB
ENCFF509LCC.bed bed (IDR thresholded peaks) 345.0 KB
ENCFF517JWG.bed bed (conservative IDR thresholded peaks) 343.2 KB
ENCFF528TGA.bam bam (unfiltered alignments) 647.4 MB
ENCFF572LJS.bed bed (peaks and background as input for IDR) 5.6 MB
ENCFF594GHH.bed bed (IDR ranked peaks) 4.1 MB
ENCFF596ZQI.bam bam (alignments) 382.5 MB
ENCFF601VSO.bigWig bigWig (signal p-value) 718.9 MB
ENCFF662UVX.bigBed bigBed (peaks and background as input for IDR) 12.8 MB
ENCFF673WFU.bigWig bigWig (fold change over control) 416.9 MB
ENCFF687MHD.bam bam (alignments) 395.7 MB
ENCFF701CVL.bam bam (alignments) 396.2 MB
ENCFF701QWL.bam bam (alignments) 411.1 MB
ENCFF712IBC.fastq fastq (reads) 547.3 MB
ENCFF725EKU.bigBed bigBed (peaks and background as input for IDR) 12.7 MB
ENCFF738ZCA.bed bed (IDR ranked peaks) 4.0 MB
ENCFF769FEY.bigWig bigWig (signal p-value) 726.7 MB
ENCFF770FTM.bed bed (IDR thresholded peaks) 313.0 KB
ENCFF794DIO.bed bed (peaks and background as input for IDR) 5.6 MB
ENCFF819JPN.bigBed bigBed (IDR thresholded peaks) 752.9 KB
ENCFF847WTF.bed bed (conservative IDR thresholded peaks) 334.7 KB
ENCFF860BSM.bed bed (IDR thresholded peaks) 247.6 KB
ENCFF865GOH.bigWig bigWig (fold change over control) 399.5 MB
ENCFF865SIX.bigWig bigWig (signal p-value) 665.4 MB
ENCFF869DNX.bigWig bigWig (signal p-value) 765.3 MB
ENCFF891OJS.bam bam (unfiltered alignments) 690.0 MB
ENCFF908CUY.bigBed bigBed (conservative IDR thresholded peaks) 750.9 KB
ENCFF910MFU.bigWig bigWig (fold change over control) 662.3 MB
ENCFF925OAE.bigBed bigBed (optimal IDR thresholded peaks) 766.8 KB
ENCFF945IQD.bigWig bigWig (signal p-value) 683.9 MB
ENCFF962LAL.bigBed bigBed (peaks and background as input for IDR) 12.8 MB
ENCFF965DZD.bam bam (unfiltered alignments) 687.6 MB
ENCFF974PHL.bigWig bigWig (signal p-value) 660.3 MB
ENCSR457PLC ENCSR · via encode_api

Control ChIP-seq in K562

Homo sapiens

14 data files
FileTypeSize
ENCFF102RVF.bam bam (alignments) 1.1 GB
ENCFF113ZAT.fastq fastq (reads) 957.9 MB
ENCFF122XBR.bam bam (unfiltered alignments) 1.4 GB
ENCFF144RDT.bam bam (unfiltered alignments) 1.4 GB
ENCFF178FKJ.bam bam (alignments) 1.1 GB
ENCFF386XET.bam bam (unfiltered alignments) 1.4 GB
ENCFF438FAN.bam bam (alignments) 1.1 GB
ENCFF574SSW.bam bam (unfiltered alignments) 1.4 GB
ENCFF658TYW.bam bam (unfiltered alignments) 1.4 GB
ENCFF750VAF.bam bam (alignments) 1.1 GB
ENCFF790QEH.bam bam (unfiltered alignments) 1.4 GB
ENCFF851QFR.bam bam (alignments) 1.1 GB
ENCFF911KYO.fastq fastq (reads) 967.8 MB
ENCFF922JGL.bam bam (alignments) 1.1 GB
ENCSR164MUK ENCSR · via encode_api

Control shRNA against no target in K562 cells followed by RNA-seq. (non-target_BGKLV28)

Homo sapiens

84 data files
FileTypeSize
ENCFF007SNI.bigWig bigWig (plus strand signal of unique reads) 102.3 MB
ENCFF020DXM.bigWig bigWig (minus strand signal of unique reads) 69.5 MB
ENCFF026ESK.tsv tsv (gene quantifications) 9.5 MB
ENCFF046NFF.bigWig bigWig (minus strand signal of unique reads) 61.6 MB
ENCFF056NLF.bigWig bigWig (plus strand signal of unique reads) 102.3 MB
ENCFF057LVS.bigWig bigWig (minus strand signal of unique reads) 100.0 MB
ENCFF068WUR.bam bam (alignments) 6.3 GB
ENCFF073DLA.bigWig bigWig (minus strand signal of all reads) 97.7 MB
ENCFF084EZN.tsv tsv (transcript quantifications) 29.9 MB
ENCFF094LPV.bigWig bigWig (minus strand signal of unique reads) 69.3 MB
ENCFF095GXT.bigWig bigWig (plus strand signal of unique reads) 60.8 MB
ENCFF134PVM.bam bam (transcriptome alignments) 9.6 GB
ENCFF162IAK.bigWig bigWig (minus strand signal of unique reads) 100.3 MB
ENCFF183FSH.bam bam (alignments) 8.5 GB
ENCFF226PRZ.bigWig bigWig (plus strand signal of all reads) 113.9 MB
ENCFF239ZDK.bam bam (alignments) 5.2 GB
ENCFF248BGZ.tsv tsv (gene quantifications) 9.1 MB
ENCFF257WCB.bigWig bigWig (plus strand signal of unique reads) 93.0 MB
ENCFF259ALY.bigWig bigWig (plus strand signal of all reads) 114.9 MB
ENCFF273KVQ.fastq fastq (reads) 4.6 GB
ENCFF310ECT.bigWig bigWig (minus strand signal of unique reads) 61.8 MB
ENCFF319KVL.bigWig bigWig (minus strand signal of all reads) 79.6 MB
ENCFF326WTJ.fastq fastq (reads) 3.4 GB
ENCFF329CNT.bigWig bigWig (minus strand signal of all reads) 112.7 MB
ENCFF331HQA.bam bam (transcriptome alignments) 7.0 GB
ENCFF336UQR.bigWig bigWig (minus strand signal of all reads) 65.3 MB
ENCFF339NSU.bigWig bigWig (minus strand signal of all reads) 79.6 MB
ENCFF339ODM.bigWig bigWig (minus strand signal of unique reads) 91.2 MB
ENCFF356NMC.tsv tsv (gene quantifications) 10.4 MB
ENCFF359FKE.bam bam (alignments) 8.5 GB
ENCFF374JIV.bigWig bigWig (plus strand signal of all reads) 80.3 MB
ENCFF384QBC.bam bam (alignments) 7.0 GB
ENCFF386MGX.bigWig bigWig (plus strand signal of unique reads) 93.4 MB
ENCFF390VLO.tsv tsv (transcript quantifications) 25.0 MB
ENCFF393WNP.bam bam (alignments) 5.2 GB
ENCFF401EBB.bigWig bigWig (minus strand signal of all reads) 77.5 MB
ENCFF402NWA.tsv tsv (gene quantifications) 9.1 MB
ENCFF407RFH.bigWig bigWig (plus strand signal of all reads) 80.3 MB
ENCFF408CQX.bam bam (transcriptome alignments) 9.5 GB
ENCFF415GAI.bigWig bigWig (plus strand signal of all reads) 99.5 MB
ENCFF428BRK.bigWig bigWig (plus strand signal of unique reads) 91.6 MB
ENCFF435PWC.bigWig bigWig (plus strand signal of unique reads) 70.7 MB
ENCFF455IQQ.tsv tsv (transcript quantifications) 27.3 MB
ENCFF471LQQ.bam bam (alignments) 8.4 GB
ENCFF475XIW.bigWig bigWig (minus strand signal of unique reads) 59.4 MB
ENCFF479IZE.tsv tsv (gene quantifications) 9.5 MB
ENCFF490QNF.bam bam (alignments) 5.2 GB
ENCFF514NPO.bigWig bigWig (plus strand signal of unique reads) 62.7 MB
ENCFF544PYU.bigWig bigWig (plus strand signal of unique reads) 70.5 MB
ENCFF575LQT.bigWig bigWig (minus strand signal of unique reads) 91.1 MB
ENCFF599EYE.tsv tsv (gene quantifications) 10.4 MB
ENCFF606ZQB.bigWig bigWig (minus strand signal of unique reads) 89.2 MB
ENCFF617DME.bigWig bigWig (plus strand signal of all reads) 69.0 MB
ENCFF623NPE.bigWig bigWig (plus strand signal of all reads) 66.4 MB
ENCFF627OPW.tsv tsv (transcript quantifications) 25.0 MB
ENCFF644QYB.bigWig bigWig (minus strand signal of all reads) 68.0 MB
ENCFF669VSB.bam bam (alignments) 7.0 GB
ENCFF670CPU.bigWig bigWig (plus strand signal of unique reads) 102.2 MB
ENCFF678RIP.bigWig bigWig (plus strand signal of all reads) 101.0 MB
ENCFF680BHR.bigWig bigWig (minus strand signal of unique reads) 69.0 MB
ENCFF684WUL.tsv tsv (transcript quantifications) 29.9 MB
ENCFF721YDQ.bam bam (alignments) 6.2 GB
ENCFF742DFR.bam bam (alignments) 7.0 GB
ENCFF750STL.bam bam (transcriptome alignments) 7.0 GB
ENCFF751LOM.fastq fastq (reads) 4.7 GB
ENCFF767FAB.bigWig bigWig (plus strand signal of unique reads) 70.4 MB
ENCFF767QZM.fastq fastq (reads) 3.4 GB
ENCFF769GMB.tsv tsv (transcript quantifications) 25.4 MB
ENCFF770MDO.bam bam (transcriptome alignments) 7.9 GB
ENCFF806ISY.bigWig bigWig (plus strand signal of all reads) 78.2 MB
ENCFF806RUI.bigWig bigWig (plus strand signal of all reads) 67.3 MB
ENCFF823TJS.tsv tsv (transcript quantifications) 27.5 MB
ENCFF824XIH.bigWig bigWig (minus strand signal of all reads) 66.7 MB
ENCFF833NWL.bigWig bigWig (plus strand signal of unique reads) 63.2 MB
ENCFF843YQJ.bigWig bigWig (minus strand signal of all reads) 113.9 MB
ENCFF853UZX.bam bam (transcriptome alignments) 10.8 GB
ENCFF857XHJ.bigWig bigWig (plus strand signal of all reads) 99.0 MB
ENCFF901ARF.bigWig bigWig (minus strand signal of all reads) 113.9 MB
ENCFF901PWU.bigWig bigWig (minus strand signal of unique reads) 100.2 MB
ENCFF924LUB.bigWig bigWig (minus strand signal of all reads) 99.2 MB
ENCFF964NLY.bam bam (alignments) 6.3 GB
ENCFF979XJR.bigWig bigWig (plus strand signal of all reads) 114.9 MB
ENCFF983WDB.bigWig bigWig (minus strand signal of all reads) 97.8 MB
ENCFF995UND.tsv tsv (transcript quantifications) 25.4 MB
ENCSR092WKG ENCSR · via encode_api

Control shRNA against no target in K562 cells followed by RNA-seq. (NT_BGKLV19-B_repeat)

Homo sapiens

84 data files
FileTypeSize
ENCFF002UOR.fastq fastq (reads) 2.6 GB
ENCFF010CNS.bigWig bigWig (plus strand signal of all reads) 100.5 MB
ENCFF028DUC.tsv tsv (transcript quantifications) 29.8 MB
ENCFF030LDZ.bigWig bigWig (minus strand signal of unique reads) 87.2 MB
ENCFF038SUT.bigWig bigWig (plus strand signal of unique reads) 80.8 MB
ENCFF046YKO.bigWig bigWig (plus strand signal of unique reads) 82.0 MB
ENCFF047WSR.bigWig bigWig (minus strand signal of unique reads) 96.8 MB
ENCFF047XVF.bigWig bigWig (minus strand signal of all reads) 96.2 MB
ENCFF074WTM.bigWig bigWig (plus strand signal of unique reads) 89.7 MB
ENCFF079DNC.bigWig bigWig (minus strand signal of unique reads) 84.3 MB
ENCFF082JLG.bigWig bigWig (minus strand signal of all reads) 95.3 MB
ENCFF108EKN.bam bam (transcriptome alignments) 7.4 GB
ENCFF115QML.bam bam (alignments) 3.7 GB
ENCFF116TNO.bigWig bigWig (minus strand signal of unique reads) 96.5 MB
ENCFF146IFO.bigWig bigWig (plus strand signal of unique reads) 87.0 MB
ENCFF155ZJN.bam bam (alignments) 4.7 GB
ENCFF190YCP.bigWig bigWig (plus strand signal of all reads) 98.9 MB
ENCFF225MRD.tsv tsv (gene quantifications) 9.5 MB
ENCFF240YWP.bigWig bigWig (minus strand signal of unique reads) 91.3 MB
ENCFF246ZVV.tsv tsv (transcript quantifications) 25.4 MB
ENCFF277MVN.bam bam (alignments) 3.8 GB
ENCFF277XJB.bam bam (alignments) 4.7 GB
ENCFF281DJS.bigWig bigWig (minus strand signal of all reads) 100.7 MB
ENCFF304CJX.bigWig bigWig (minus strand signal of all reads) 109.8 MB
ENCFF316CCA.fastq fastq (reads) 2.6 GB
ENCFF316RQA.bigWig bigWig (plus strand signal of unique reads) 93.3 MB
ENCFF331JAP.bigWig bigWig (minus strand signal of all reads) 109.8 MB
ENCFF332JSL.bigWig bigWig (plus strand signal of all reads) 96.5 MB
ENCFF341RWA.bigWig bigWig (plus strand signal of all reads) 88.0 MB
ENCFF354PMU.bam bam (transcriptome alignments) 6.1 GB
ENCFF358GBU.bigWig bigWig (minus strand signal of unique reads) 80.3 MB
ENCFF359CKZ.bam bam (alignments) 5.9 GB
ENCFF375SEL.tsv tsv (gene quantifications) 9.1 MB
ENCFF382MSU.bigWig bigWig (minus strand signal of unique reads) 78.5 MB
ENCFF382VQS.tsv tsv (gene quantifications) 9.5 MB
ENCFF411KBV.bigWig bigWig (plus strand signal of all reads) 86.7 MB
ENCFF414QXU.bigWig bigWig (minus strand signal of all reads) 108.5 MB
ENCFF418PUZ.tsv tsv (transcript quantifications) 24.9 MB
ENCFF429NZR.bam bam (transcriptome alignments) 6.9 GB
ENCFF433KXW.bigWig bigWig (minus strand signal of unique reads) 81.5 MB
ENCFF440EAZ.bigWig bigWig (plus strand signal of unique reads) 83.6 MB
ENCFF442PRX.tsv tsv (transcript quantifications) 24.9 MB
ENCFF455ZYF.tsv tsv (transcript quantifications) 25.3 MB
ENCFF474CRP.bigWig bigWig (plus strand signal of unique reads) 98.7 MB
ENCFF482POU.bigWig bigWig (plus strand signal of unique reads) 86.7 MB
ENCFF483BBA.bam bam (transcriptome alignments) 8.5 GB
ENCFF483ODA.tsv tsv (transcript quantifications) 27.4 MB
ENCFF508KBY.fastq fastq (reads) 3.2 GB
ENCFF512RLO.bigWig bigWig (plus strand signal of unique reads) 95.0 MB
ENCFF520TCL.bigWig bigWig (plus strand signal of all reads) 111.1 MB
ENCFF583VAW.bigWig bigWig (minus strand signal of all reads) 96.7 MB
ENCFF601IUN.bam bam (alignments) 5.9 GB
ENCFF614YYL.bigWig bigWig (plus strand signal of all reads) 97.3 MB
ENCFF668QDE.bam bam (transcriptome alignments) 6.0 GB
ENCFF680FLW.bam bam (alignments) 5.6 GB
ENCFF690KDS.bigWig bigWig (minus strand signal of all reads) 97.0 MB
ENCFF702YWZ.bigWig bigWig (plus strand signal of unique reads) 86.2 MB
ENCFF711JSS.bam bam (alignments) 4.7 GB
ENCFF733IPD.bam bam (alignments) 4.5 GB
ENCFF736HEP.tsv tsv (gene quantifications) 10.4 MB
ENCFF746NGY.bigWig bigWig (plus strand signal of all reads) 109.9 MB
ENCFF746YUL.bam bam (alignments) 3.7 GB
ENCFF754WTU.bigWig bigWig (plus strand signal of all reads) 102.4 MB
ENCFF756OUJ.tsv tsv (gene quantifications) 9.1 MB
ENCFF789OLR.bigWig bigWig (plus strand signal of all reads) 111.2 MB
ENCFF811RHZ.tsv tsv (gene quantifications) 10.4 MB
ENCFF816PNM.bigWig bigWig (minus strand signal of all reads) 85.1 MB
ENCFF819ZVG.bigWig bigWig (minus strand signal of all reads) 99.2 MB
ENCFF833LIP.tsv tsv (transcript quantifications) 29.9 MB
ENCFF835JXL.bigWig bigWig (plus strand signal of all reads) 90.4 MB
ENCFF836FZH.bigWig bigWig (plus strand signal of unique reads) 99.4 MB
ENCFF848OSN.bigWig bigWig (plus strand signal of all reads) 97.8 MB
ENCFF864TPH.fastq fastq (reads) 3.2 GB
ENCFF866DBE.bigWig bigWig (minus strand signal of unique reads) 92.7 MB
ENCFF871DVA.bam bam (alignments) 4.5 GB
ENCFF892EVK.bam bam (alignments) 4.5 GB
ENCFF896OJG.bigWig bigWig (minus strand signal of unique reads) 84.8 MB
ENCFF902OMI.bigWig bigWig (minus strand signal of all reads) 86.9 MB
ENCFF904PVZ.bigWig bigWig (minus strand signal of unique reads) 97.1 MB
ENCFF914KGT.bigWig bigWig (minus strand signal of all reads) 88.9 MB
ENCFF917SYF.bigWig bigWig (minus strand signal of unique reads) 85.0 MB
ENCFF936NVB.bigWig bigWig (plus strand signal of unique reads) 99.2 MB
ENCFF956ZVM.bam bam (transcriptome alignments) 7.4 GB
ENCFF977ADE.tsv tsv (transcript quantifications) 27.4 MB
ENCSR746NIM ENCSR · via encode_api

RNA-seq on K562 cells treated with an shRNA knockdown against HNRNPM. (HNRNPM_BGKLV29)

Homo sapiens

92 data files
FileTypeSize
ENCFF003TTL.bam bam (alignments) 2.7 GB
ENCFF009YTD.bam bam (alignments) 2.1 GB
ENCFF013OYM.bam bam (alignments) 2.1 GB
ENCFF030EWZ.bigWig bigWig (minus strand signal of all reads) 57.6 MB
ENCFF032UBP.bigWig bigWig (plus strand signal of unique reads) 49.6 MB
ENCFF044DLQ.bigWig bigWig (plus strand signal of all reads) 59.5 MB
ENCFF055UBG.bigWig bigWig (minus strand signal of all reads) 51.2 MB
ENCFF060VSE.bam bam (alignments) 2.8 GB
ENCFF068TCX.bam bam (transcriptome alignments) 3.6 GB
ENCFF074DEH.bigWig bigWig (minus strand signal of unique reads) 48.3 MB
ENCFF082OIK.tsv tsv (transcript quantifications) 29.9 MB
ENCFF092XXV.bigWig bigWig (plus strand signal of all reads) 60.5 MB
ENCFF118DMA.bigWig bigWig (minus strand signal of all reads) 57.6 MB
ENCFF122ISF.bigWig bigWig (minus strand signal of unique reads) 47.0 MB
ENCFF122JRC.bigWig bigWig (minus strand signal of unique reads) 50.9 MB
ENCFF129QBF.tsv tsv (gene quantifications) 9.1 MB
ENCFF137VCT.bigWig bigWig (minus strand signal of unique reads) 52.1 MB
ENCFF160TRI.fastq fastq (reads) 1.6 GB
ENCFF186BUH.bigWig bigWig (plus strand signal of all reads) 57.7 MB
ENCFF197QFK.bam bam (alignments) 2.7 GB
ENCFF212KZT.bigWig bigWig (plus strand signal of unique reads) 51.7 MB
ENCFF214YER.bigWig bigWig (plus strand signal of all reads) 60.5 MB
ENCFF230MRI.tar tar (differential splicing quantifications) 4.1 MB
ENCFF234QMY.tsv tsv (transcript quantifications) 24.9 MB
ENCFF256RJE.bigWig bigWig (minus strand signal of all reads) 50.1 MB
ENCFF256UZO.fastq fastq (reads) 1.5 GB
ENCFF286WCY.bigWig bigWig (plus strand signal of all reads) 51.2 MB
ENCFF290HSH.tar tar (differential splicing quantifications) 13.9 MB
ENCFF303THD.bigWig bigWig (minus strand signal of unique reads) 46.0 MB
ENCFF336PLG.bigWig bigWig (plus strand signal of unique reads) 53.3 MB
ENCFF353DLI.bam bam (alignments) 2.6 GB
ENCFF367ZNN.bam bam (transcriptome alignments) 3.6 GB
ENCFF380WYR.bam bam (alignments) 2.7 GB
ENCFF397MBN.bigWig bigWig (plus strand signal of unique reads) 50.5 MB
ENCFF397NIX.tsv tsv (transcript quantifications) 29.8 MB
ENCFF416YDQ.bam bam (transcriptome alignments) 3.6 GB
ENCFF419TWU.tsv tsv (gene quantifications) 9.1 MB
ENCFF428YYW.bigWig bigWig (minus strand signal of all reads) 59.7 MB
ENCFF478BUD.bam bam (alignments) 2.1 GB
ENCFF507QSZ.bigWig bigWig (minus strand signal of all reads) 56.9 MB
ENCFF507ZOO.fastq fastq (reads) 1.6 GB
ENCFF514PCR.bigWig bigWig (minus strand signal of all reads) 51.6 MB
ENCFF532JQW.tsv tsv (gene quantifications) 9.4 MB
ENCFF545WIM.bigWig bigWig (minus strand signal of all reads) 54.1 MB
ENCFF548EFX.bam bam (alignments) 2.2 GB
ENCFF558MOO.tsv tsv (transcript quantifications) 27.2 MB
ENCFF573ZVV.bigWig bigWig (minus strand signal of all reads) 58.8 MB
ENCFF574OWX.bigWig bigWig (minus strand signal of unique reads) 49.5 MB
ENCFF575XOE.tsv tsv (differential expression quantifications) 4.3 MB
ENCFF579AJP.bam bam (alignments) 2.2 GB
ENCFF581JIC.bigWig bigWig (minus strand signal of unique reads) 51.0 MB
ENCFF586SRF.bigWig bigWig (plus strand signal of all reads) 55.2 MB
ENCFF596RPF.bigWig bigWig (minus strand signal of unique reads) 47.7 MB
ENCFF609WBV.tsv tsv (gene quantifications) 10.4 MB
ENCFF617XEU.tsv tsv (transcript quantifications) 24.9 MB
ENCFF652HWN.tsv tsv (gene quantifications) 9.4 MB
ENCFF705OPC.tsv tsv (gene quantifications) 10.4 MB
ENCFF718MAY.bigWig bigWig (minus strand signal of unique reads) 50.5 MB
ENCFF759ZVM.bam bam (alignments) 2.2 GB
ENCFF770WXX.bigWig bigWig (plus strand signal of unique reads) 48.8 MB
ENCFF773XNO.bigWig bigWig (plus strand signal of unique reads) 52.2 MB
ENCFF793EKE.bigWig bigWig (plus strand signal of unique reads) 52.2 MB
ENCFF794FAY.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF795GAH.fastq fastq (reads) 1.6 GB
ENCFF807DUU.bigWig bigWig (plus strand signal of unique reads) 53.4 MB
ENCFF817BSB.bigWig bigWig (plus strand signal of all reads) 52.7 MB
ENCFF822JYM.tsv tsv (transcript quantifications) 25.4 MB
ENCFF823SOX.bigWig bigWig (plus strand signal of all reads) 58.4 MB
ENCFF824NDR.bigWig bigWig (minus strand signal of all reads) 52.9 MB
ENCFF835MUT.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF856HJT.bigWig bigWig (minus strand signal of all reads) 59.7 MB
ENCFF866FNB.bam bam (transcriptome alignments) 4.1 GB
ENCFF866PGA.bigWig bigWig (minus strand signal of unique reads) 52.1 MB
ENCFF869DOS.bam bam (transcriptome alignments) 3.7 GB
ENCFF871HBC.bigWig bigWig (plus strand signal of unique reads) 47.4 MB
ENCFF896GPU.bigWig bigWig (plus strand signal of all reads) 52.1 MB
ENCFF902RCI.bigWig bigWig (plus strand signal of unique reads) 50.9 MB
ENCFF905XBO.bigWig bigWig (minus strand signal of all reads) 52.3 MB
ENCFF915MMV.bigWig bigWig (plus strand signal of all reads) 58.4 MB
ENCFF917TYP.bigWig bigWig (plus strand signal of unique reads) 53.4 MB
ENCFF918OTK.tsv tsv (differential expression quantifications) 2.7 MB
ENCFF932FNP.bigWig bigWig (minus strand signal of unique reads) 52.2 MB
ENCFF934JAG.bigWig bigWig (minus strand signal of unique reads) 49.7 MB
ENCFF940WLP.tsv tsv (transcript quantifications) 27.2 MB
ENCFF943JNZ.bigWig bigWig (plus strand signal of all reads) 53.9 MB
ENCFF945XLY.bigWig bigWig (plus strand signal of unique reads) 48.4 MB
ENCFF949YJG.bam bam (transcriptome alignments) 4.2 GB
ENCFF964BTU.tar tar (differential splicing quantifications) 3.4 MB
ENCFF974XUN.bigWig bigWig (plus strand signal of all reads) 53.1 MB
ENCFF996WUI.bam bam (alignments) 2.8 GB
ENCFF996ZHA.tsv tsv (transcript quantifications) 25.4 MB
ENCFF997NQV.tsv tsv (differential expression quantifications) 1.8 MB
ENCSR419JMU ENCSR · via encode_api

Control shRNA against no target in K562 cells followed by RNA-seq. (non-target_BGKLV24_B)

Homo sapiens

84 data files
FileTypeSize
ENCFF002UFF.bigWig bigWig (minus strand signal of all reads) 91.0 MB
ENCFF022HJQ.bigWig bigWig (minus strand signal of unique reads) 91.1 MB
ENCFF036QQR.bigWig bigWig (minus strand signal of unique reads) 89.4 MB
ENCFF039CSZ.bigWig bigWig (plus strand signal of all reads) 92.2 MB
ENCFF056BGI.bigWig bigWig (plus strand signal of all reads) 94.5 MB
ENCFF056RID.bigWig bigWig (minus strand signal of all reads) 102.8 MB
ENCFF089LPZ.bigWig bigWig (plus strand signal of all reads) 89.9 MB
ENCFF098BUU.bigWig bigWig (plus strand signal of unique reads) 91.5 MB
ENCFF100RIE.bigWig bigWig (minus strand signal of unique reads) 80.4 MB
ENCFF111AWS.fastq fastq (reads) 3.7 GB
ENCFF132AJJ.bam bam (transcriptome alignments) 8.7 GB
ENCFF142MZD.bigWig bigWig (minus strand signal of all reads) 88.8 MB
ENCFF145THJ.bigWig bigWig (minus strand signal of unique reads) 81.0 MB
ENCFF158PAN.bam bam (alignments) 5.6 GB
ENCFF177NZR.bam bam (alignments) 5.5 GB
ENCFF209ZKI.bigWig bigWig (minus strand signal of unique reads) 76.7 MB
ENCFF210TKU.bam bam (transcriptome alignments) 7.6 GB
ENCFF212WWN.bam bam (alignments) 6.8 GB
ENCFF217MRI.bigWig bigWig (plus strand signal of all reads) 91.1 MB
ENCFF231FXO.tsv tsv (transcript quantifications) 29.9 MB
ENCFF240MKR.tsv tsv (gene quantifications) 10.4 MB
ENCFF264YZI.bam bam (alignments) 5.6 GB
ENCFF271OPL.bigWig bigWig (minus strand signal of unique reads) 83.9 MB
ENCFF280ZWW.bigWig bigWig (plus strand signal of unique reads) 93.4 MB
ENCFF320JVI.bam bam (alignments) 6.8 GB
ENCFF329OSU.bigWig bigWig (minus strand signal of all reads) 89.4 MB
ENCFF341IPN.bigWig bigWig (plus strand signal of all reads) 103.9 MB
ENCFF373PLP.bigWig bigWig (plus strand signal of unique reads) 91.3 MB
ENCFF373PQD.bam bam (transcriptome alignments) 7.7 GB
ENCFF389CVO.bigWig bigWig (minus strand signal of unique reads) 84.1 MB
ENCFF391SDF.tsv tsv (gene quantifications) 9.5 MB
ENCFF396PTN.bigWig bigWig (minus strand signal of all reads) 82.7 MB
ENCFF408CQG.bigWig bigWig (plus strand signal of unique reads) 93.4 MB
ENCFF413BEI.bigWig bigWig (minus strand signal of all reads) 89.3 MB
ENCFF413VVV.bigWig bigWig (minus strand signal of all reads) 102.8 MB
ENCFF423EUU.tsv tsv (transcript quantifications) 25.4 MB
ENCFF447KSW.fastq fastq (reads) 3.8 GB
ENCFF448GQT.bam bam (alignments) 6.7 GB
ENCFF449GNI.bigWig bigWig (minus strand signal of unique reads) 80.6 MB
ENCFF455GSC.bigWig bigWig (plus strand signal of all reads) 100.3 MB
ENCFF459KUS.tsv tsv (gene quantifications) 10.4 MB
ENCFF482QOL.tsv tsv (transcript quantifications) 25.4 MB
ENCFF486RUF.bam bam (alignments) 6.6 GB
ENCFF495UWB.bigWig bigWig (plus strand signal of all reads) 105.6 MB
ENCFF497HLJ.fastq fastq (reads) 3.7 GB
ENCFF503VGY.bigWig bigWig (plus strand signal of all reads) 103.9 MB
ENCFF504USJ.bigWig bigWig (minus strand signal of all reads) 104.3 MB
ENCFF508ICF.bam bam (transcriptome alignments) 7.5 GB
ENCFF521EPR.bam bam (alignments) 5.6 GB
ENCFF528PCX.bigWig bigWig (plus strand signal of unique reads) 83.0 MB
ENCFF561NSL.fastq fastq (reads) 3.8 GB
ENCFF573NQR.bigWig bigWig (minus strand signal of unique reads) 91.3 MB
ENCFF598DPP.tsv tsv (transcript quantifications) 25.0 MB
ENCFF603DOX.bigWig bigWig (minus strand signal of all reads) 104.3 MB
ENCFF603MEO.bigWig bigWig (minus strand signal of all reads) 102.8 MB
ENCFF607TLE.bigWig bigWig (minus strand signal of unique reads) 89.5 MB
ENCFF619FHQ.bigWig bigWig (plus strand signal of unique reads) 85.8 MB
ENCFF651OYD.tsv tsv (transcript quantifications) 27.4 MB
ENCFF661LLS.tsv tsv (gene quantifications) 9.1 MB
ENCFF680LXP.bigWig bigWig (plus strand signal of unique reads) 86.3 MB
ENCFF681KMW.bigWig bigWig (minus strand signal of unique reads) 91.3 MB
ENCFF687WMI.bigWig bigWig (plus strand signal of unique reads) 82.6 MB
ENCFF689TGX.bam bam (alignments) 6.7 GB
ENCFF690APF.bigWig bigWig (plus strand signal of unique reads) 91.8 MB
ENCFF698JGB.bam bam (alignments) 6.7 GB
ENCFF704RLC.bigWig bigWig (minus strand signal of all reads) 99.2 MB
ENCFF716OTW.tsv tsv (transcript quantifications) 29.9 MB
ENCFF717AKN.bigWig bigWig (plus strand signal of all reads) 105.6 MB
ENCFF717TRR.bam bam (alignments) 5.5 GB
ENCFF744XJK.bigWig bigWig (plus strand signal of unique reads) 93.5 MB
ENCFF761XVZ.tsv tsv (transcript quantifications) 25.0 MB
ENCFF793QOY.tsv tsv (gene quantifications) 9.5 MB
ENCFF797QAC.bigWig bigWig (minus strand signal of unique reads) 89.9 MB
ENCFF797VWM.tsv tsv (gene quantifications) 9.1 MB
ENCFF799QLJ.bigWig bigWig (plus strand signal of all reads) 90.8 MB
ENCFF820AZB.bigWig bigWig (plus strand signal of unique reads) 82.3 MB
ENCFF830ZML.bigWig bigWig (plus strand signal of all reads) 104.2 MB
ENCFF838SIL.bam bam (transcriptome alignments) 7.6 GB
ENCFF851BEX.bam bam (alignments) 5.5 GB
ENCFF862GEK.bigWig bigWig (minus strand signal of all reads) 92.7 MB
ENCFF895JDI.bam bam (transcriptome alignments) 8.5 GB
ENCFF924FOL.bigWig bigWig (plus strand signal of all reads) 84.2 MB
ENCFF937IMO.bigWig bigWig (plus strand signal of unique reads) 78.7 MB
ENCFF944WGE.tsv tsv (transcript quantifications) 27.3 MB
ENCSR192GBD ENCSR · via encode_api

RNA-seq on K562 cells treated with an shRNA knockdown against PABPC1. (PABPC1_BGKLV24_B)

Homo sapiens

92 data files
FileTypeSize
ENCFF007THE.bigWig bigWig (minus strand signal of all reads) 115.1 MB
ENCFF023FZU.tar tar (differential splicing quantifications) 5.0 MB
ENCFF031CFG.bam bam (alignments) 5.1 GB
ENCFF049AXL.bigWig bigWig (minus strand signal of unique reads) 108.0 MB
ENCFF070OFT.bigWig bigWig (minus strand signal of all reads) 83.2 MB
ENCFF108KKF.bigWig bigWig (plus strand signal of unique reads) 76.0 MB
ENCFF119AMM.bigWig bigWig (plus strand signal of unique reads) 117.9 MB
ENCFF124NGV.bigWig bigWig (minus strand signal of unique reads) 107.8 MB
ENCFF133RHB.bigWig bigWig (minus strand signal of unique reads) 84.6 MB
ENCFF141GMF.fastq fastq (reads) 2.8 GB
ENCFF143XHC.bam bam (transcriptome alignments) 11.9 GB
ENCFF147JCB.tsv tsv (transcript quantifications) 27.5 MB
ENCFF151ZEL.bam bam (alignments) 10.8 GB
ENCFF162CTR.bam bam (transcriptome alignments) 5.6 GB
ENCFF162WBK.tsv tsv (differential expression quantifications) 4.4 MB
ENCFF212MGD.tsv tsv (differential expression quantifications) 1.8 MB
ENCFF215KDN.bigWig bigWig (plus strand signal of all reads) 116.1 MB
ENCFF219BBA.bigWig bigWig (minus strand signal of all reads) 81.4 MB
ENCFF219UVY.bigWig bigWig (minus strand signal of unique reads) 104.2 MB
ENCFF224RBP.bigWig bigWig (plus strand signal of unique reads) 85.4 MB
ENCFF262HJU.bigWig bigWig (minus strand signal of all reads) 118.6 MB
ENCFF269PWU.bigWig bigWig (plus strand signal of unique reads) 110.3 MB
ENCFF276FJW.bigWig bigWig (plus strand signal of unique reads) 86.1 MB
ENCFF287LWP.bigWig bigWig (minus strand signal of unique reads) 74.3 MB
ENCFF303XDF.bam bam (transcriptome alignments) 5.6 GB
ENCFF308ALL.bigWig bigWig (plus strand signal of unique reads) 117.0 MB
ENCFF321JGG.bigWig bigWig (plus strand signal of all reads) 120.4 MB
ENCFF331BMK.bigWig bigWig (plus strand signal of unique reads) 86.1 MB
ENCFF340VYZ.bigWig bigWig (plus strand signal of all reads) 83.9 MB
ENCFF341WHQ.tsv tsv (differential expression quantifications) 2.0 MB
ENCFF361TUZ.bam bam (alignments) 10.6 GB
ENCFF380NPY.fastq fastq (reads) 2.8 GB
ENCFF392WTI.bam bam (alignments) 4.2 GB
ENCFF394UUK.tar tar (differential splicing quantifications) 4.1 MB
ENCFF395VMF.bam bam (transcriptome alignments) 13.5 GB
ENCFF447YVK.bigWig bigWig (plus strand signal of all reads) 82.7 MB
ENCFF456ULR.bigWig bigWig (plus strand signal of all reads) 96.7 MB
ENCFF469DFD.bigWig bigWig (plus strand signal of unique reads) 78.7 MB
ENCFF481KEG.bigWig bigWig (minus strand signal of unique reads) 114.6 MB
ENCFF486OGL.bigWig bigWig (minus strand signal of all reads) 86.1 MB
ENCFF489VOC.bigWig bigWig (minus strand signal of all reads) 95.9 MB
ENCFF492LGD.tsv tsv (gene quantifications) 10.4 MB
ENCFF497SBI.bigWig bigWig (minus strand signal of all reads) 94.2 MB
ENCFF531QPK.bigWig bigWig (minus strand signal of all reads) 132.7 MB
ENCFF536ORZ.bigWig bigWig (plus strand signal of all reads) 130.4 MB
ENCFF538EOQ.tsv tsv (gene quantifications) 9.5 MB
ENCFF561OVU.bam bam (alignments) 8.8 GB
ENCFF578MAT.bigWig bigWig (plus strand signal of all reads) 95.0 MB
ENCFF578NKN.bigWig bigWig (minus strand signal of unique reads) 116.4 MB
ENCFF588NFC.bam bam (transcriptome alignments) 11.9 GB
ENCFF588ORS.tsv tsv (transcript quantifications) 24.9 MB
ENCFF600ULM.bam bam (alignments) 10.8 GB
ENCFF610SBC.bigWig bigWig (plus strand signal of all reads) 87.3 MB
ENCFF624SFG.bigWig bigWig (minus strand signal of all reads) 112.9 MB
ENCFF631VFJ.bigWig bigWig (plus strand signal of all reads) 114.6 MB
ENCFF632DCW.tsv tsv (transcript quantifications) 27.4 MB
ENCFF638KFL.bigWig bigWig (minus strand signal of unique reads) 83.6 MB
ENCFF641JWT.bigWig bigWig (plus strand signal of unique reads) 106.7 MB
ENCFF657YQC.bam bam (alignments) 8.8 GB
ENCFF673ANB.fastq fastq (reads) 6.0 GB
ENCFF690FUA.tar tar (differential splicing quantifications) 16.2 MB
ENCFF715TEP.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF721BYP.bigWig bigWig (minus strand signal of unique reads) 115.8 MB
ENCFF727FMY.bigWig bigWig (plus strand signal of unique reads) 79.5 MB
ENCFF727MZH.tsv tsv (gene quantifications) 9.5 MB
ENCFF733CHS.bigWig bigWig (plus strand signal of unique reads) 118.5 MB
ENCFF743SKU.tsv tsv (gene quantifications) 9.1 MB
ENCFF764JYX.bigWig bigWig (plus strand signal of all reads) 96.6 MB
ENCFF775ZYI.tsv tsv (transcript quantifications) 25.3 MB
ENCFF778SSL.bigWig bigWig (minus strand signal of unique reads) 84.5 MB
ENCFF779NWW.tsv tsv (transcript quantifications) 29.8 MB
ENCFF780YNI.bigWig bigWig (minus strand signal of unique reads) 77.8 MB
ENCFF782KHB.bam bam (alignments) 4.2 GB
ENCFF787DQA.bigWig bigWig (minus strand signal of unique reads) 77.4 MB
ENCFF793QSD.bigWig bigWig (plus strand signal of all reads) 133.8 MB
ENCFF797NXU.tsv tsv (transcript quantifications) 25.4 MB
ENCFF800CFL.bam bam (alignments) 5.0 GB
ENCFF804TNX.bigWig bigWig (minus strand signal of all reads) 129.2 MB
ENCFF807QDB.bam bam (alignments) 8.9 GB
ENCFF825OKP.tsv tsv (transcript quantifications) 29.9 MB
ENCFF834WMM.bigWig bigWig (plus strand signal of unique reads) 109.7 MB
ENCFF859URU.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF889ZJT.bam bam (alignments) 5.1 GB
ENCFF895GLC.bigWig bigWig (minus strand signal of all reads) 95.9 MB
ENCFF918FEI.bam bam (alignments) 4.2 GB
ENCFF922HRF.bigWig bigWig (minus strand signal of all reads) 132.6 MB
ENCFF928JVK.tsv tsv (gene quantifications) 9.1 MB
ENCFF942RYS.bam bam (transcriptome alignments) 6.4 GB
ENCFF961SLW.tsv tsv (transcript quantifications) 25.0 MB
ENCFF965UBE.bigWig bigWig (plus strand signal of all reads) 133.8 MB
ENCFF968JSN.fastq fastq (reads) 6.0 GB
ENCFF994WZT.tsv tsv (gene quantifications) 10.4 MB
ENCSR828ALT ENCSR · via encode_api

eCLIP control experiment on HepG2 against CDC40

Homo sapiens

8 data files
FileTypeSize
ENCFF127GEV.bam bam (alignments) 635.8 MB
ENCFF146LGF.bigWig bigWig (minus strand signal of unique reads) 28.9 MB
ENCFF188PUE.fastq fastq (reads) 475.1 MB
ENCFF238HQO.fastq fastq (reads) 506.0 MB
ENCFF517ENZ.bigWig bigWig (plus strand signal of unique reads) 29.3 MB
ENCFF574ISZ.bigWig bigWig (plus strand signal of unique reads) 28.7 MB
ENCFF656NLF.bam bam (alignments) 629.5 MB
ENCFF792MED.bigWig bigWig (minus strand signal of unique reads) 28.6 MB
ENCSR921SHJ ENCSR · via encode_api

eCLIP control experiment on K562 against NCBP2

Homo sapiens

8 data files
FileTypeSize
ENCFF009XXJ.bigWig bigWig (plus strand signal of unique reads) 11.9 MB
ENCFF074LHS.bam bam (alignments) 230.2 MB
ENCFF093FNE.fastq fastq (reads) 706.9 MB
ENCFF184DBI.fastq fastq (reads) 726.6 MB
ENCFF569ICA.bigWig bigWig (minus strand signal of unique reads) 11.2 MB
ENCFF627PAV.bigWig bigWig (minus strand signal of unique reads) 11.4 MB
ENCFF645DVZ.bigWig bigWig (plus strand signal of unique reads) 11.6 MB
ENCFF792PAX.bam bam (alignments) 231.9 MB
ENCSR334OMC ENCSR · via encode_api

eCLIP control experiment on HepG2 against DDX59

Homo sapiens

8 data files
FileTypeSize
ENCFF064OAG.bigWig bigWig (plus strand signal of unique reads) 30.0 MB
ENCFF077CNB.bigWig bigWig (plus strand signal of unique reads) 30.3 MB
ENCFF390FNJ.bam bam (alignments) 663.6 MB
ENCFF626WWC.bigWig bigWig (minus strand signal of unique reads) 29.6 MB
ENCFF678SWO.fastq fastq (reads) 556.4 MB
ENCFF810FHS.bigWig bigWig (minus strand signal of unique reads) 29.9 MB
ENCFF993FHX.fastq fastq (reads) 593.8 MB
ENCFF995MPE.bam bam (alignments) 656.4 MB
ENCSR307EIC ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) input control experiment of SF1 and HNRNPL

1 data file
FileTypeSize
ENCFF395BBW.fastq fastq (reads) 611.3 MB
ENCSR643JMB ENCSR · via encode_api

eCLIP control experiment on HepG2 against HNRNPUL1

Homo sapiens

8 data files
FileTypeSize
ENCFF129GZF.bigWig bigWig (plus strand signal of unique reads) 32.1 MB
ENCFF300XRU.fastq fastq (reads) 649.6 MB
ENCFF382BPZ.fastq fastq (reads) 615.8 MB
ENCFF558HAM.bigWig bigWig (plus strand signal of unique reads) 32.3 MB
ENCFF603RBW.bigWig bigWig (minus strand signal of unique reads) 31.4 MB
ENCFF635FQJ.bam bam (alignments) 754.2 MB
ENCFF647EHU.bam bam (alignments) 748.9 MB
ENCFF840PPW.bigWig bigWig (minus strand signal of unique reads) 32.0 MB
ENCSR157BRV ENCSR · via encode_api

eCLIP control experiment on K562 against GTF2F1

Homo sapiens

8 data files
FileTypeSize
ENCFF057SJT.fastq fastq (reads) 530.6 MB
ENCFF135DTM.bam bam (alignments) 371.1 MB
ENCFF317QOW.fastq fastq (reads) 545.3 MB
ENCFF412TBZ.bigWig bigWig (plus strand signal of unique reads) 17.9 MB
ENCFF471ZFP.bam bam (alignments) 373.2 MB
ENCFF821SOM.bigWig bigWig (plus strand signal of unique reads) 18.0 MB
ENCFF850NEA.bigWig bigWig (minus strand signal of unique reads) 17.3 MB
ENCFF931JAI.bigWig bigWig (minus strand signal of unique reads) 17.4 MB
ENCSR670UPZ ENCSR · via encode_api

eCLIP control experiment on HepG2 against SLTM

Homo sapiens

8 data files
FileTypeSize
ENCFF171JWT.bigWig bigWig (plus strand signal of unique reads) 24.0 MB
ENCFF262DRT.bam bam (alignments) 455.9 MB
ENCFF489KGX.fastq fastq (reads) 383.7 MB
ENCFF514JKI.bigWig bigWig (plus strand signal of unique reads) 24.2 MB
ENCFF596UYR.bam bam (alignments) 458.9 MB
ENCFF876NHB.bigWig bigWig (minus strand signal of unique reads) 23.7 MB
ENCFF956MVA.bigWig bigWig (minus strand signal of unique reads) 23.5 MB
ENCFF995SCZ.fastq fastq (reads) 407.7 MB
ENCSR925TYQ ENCSR · via encode_api

eCLIP control experiment on K562 against SRSF1

Homo sapiens

8 data files
FileTypeSize
ENCFF017BEN.fastq fastq (reads) 571.4 MB
ENCFF160TSX.bigWig bigWig (minus strand signal of unique reads) 13.4 MB
ENCFF222JZO.bigWig bigWig (minus strand signal of unique reads) 13.3 MB
ENCFF376PZO.fastq fastq (reads) 582.9 MB
ENCFF563VJQ.bam bam (alignments) 287.9 MB
ENCFF772TJM.bigWig bigWig (plus strand signal of unique reads) 13.9 MB
ENCFF913MGS.bam bam (alignments) 287.6 MB
ENCFF914MGN.bigWig bigWig (plus strand signal of unique reads) 13.9 MB
ENCSR167OYL ENCSR · via encode_api

eCLIP control experiment on HepG2 against SND1

Homo sapiens

8 data files
FileTypeSize
ENCFF178GMB.bigWig bigWig (minus strand signal of unique reads) 16.4 MB
ENCFF259IKG.bigWig bigWig (plus strand signal of unique reads) 17.0 MB
ENCFF354GQD.fastq fastq (reads) 460.7 MB
ENCFF358QQZ.bigWig bigWig (plus strand signal of unique reads) 16.8 MB
ENCFF431GGI.fastq fastq (reads) 441.7 MB
ENCFF543YCY.bam bam (alignments) 344.6 MB
ENCFF635IJV.bigWig bigWig (minus strand signal of unique reads) 16.5 MB
ENCFF774RKG.bam bam (alignments) 346.3 MB
ENCSR575DKE ENCSR · via encode_api

eCLIP control experiment on K562 against FTO

Homo sapiens

8 data files
FileTypeSize
ENCFF383LSV.bigWig bigWig (plus strand signal of unique reads) 23.1 MB
ENCFF506OAM.bam bam (alignments) 509.6 MB
ENCFF527PPO.bigWig bigWig (plus strand signal of unique reads) 22.7 MB
ENCFF604ASW.bigWig bigWig (minus strand signal of unique reads) 21.9 MB
ENCFF679NRW.fastq fastq (reads) 738.4 MB
ENCFF687LVV.bigWig bigWig (minus strand signal of unique reads) 22.3 MB
ENCFF755GLY.bam bam (alignments) 500.3 MB
ENCFF757EAS.fastq fastq (reads) 659.2 MB
ENCSR687HHB ENCSR · via encode_api

eCLIP control experiment on K562 against XRCC6

Homo sapiens

8 data files
FileTypeSize
ENCFF015IHV.bigWig bigWig (minus strand signal of unique reads) 33.3 MB
ENCFF018HDR.fastq fastq (reads) 865.8 MB
ENCFF043FPL.bigWig bigWig (plus strand signal of unique reads) 35.5 MB
ENCFF314GJB.fastq fastq (reads) 900.9 MB
ENCFF424DIC.bam bam (alignments) 786.6 MB
ENCFF639NLY.bigWig bigWig (minus strand signal of unique reads) 34.3 MB
ENCFF688WAC.bigWig bigWig (plus strand signal of unique reads) 34.5 MB
ENCFF984WTC.bam bam (alignments) 801.3 MB
ENCSR439GXW ENCSR · via encode_api

eCLIP control experiment on K562 against PUM2

Homo sapiens

8 data files
FileTypeSize
ENCFF034QCL.bigWig bigWig (minus strand signal of unique reads) 45.2 MB
ENCFF043ERY.bam bam (alignments) 1.0 GB
ENCFF495ZPY.fastq fastq (reads) 917.2 MB
ENCFF557YVW.bigWig bigWig (plus strand signal of unique reads) 45.9 MB
ENCFF616FCF.fastq fastq (reads) 1020.9 MB
ENCFF776BXG.bigWig bigWig (minus strand signal of unique reads) 44.4 MB
ENCFF786ZZB.bam bam (alignments) 1.1 GB
ENCFF880UXZ.bigWig bigWig (plus strand signal of unique reads) 46.8 MB
ENCSR391GLS ENCSR · via encode_api

eCLIP control experiment on HepG2 against CSTF2T

Homo sapiens

8 data files
FileTypeSize
ENCFF073SGO.bam bam (alignments) 643.4 MB
ENCFF094OOZ.fastq fastq (reads) 682.3 MB
ENCFF302NNV.bigWig bigWig (plus strand signal of unique reads) 28.5 MB
ENCFF384VPJ.bigWig bigWig (plus strand signal of unique reads) 28.7 MB
ENCFF539YZX.bam bam (alignments) 647.4 MB
ENCFF586TVW.bigWig bigWig (minus strand signal of unique reads) 27.8 MB
ENCFF895RAR.fastq fastq (reads) 668.3 MB
ENCFF979VAZ.bigWig bigWig (minus strand signal of unique reads) 27.6 MB
ENCSR616BTD ENCSR · via encode_api

eCLIP control experiment on K562 against DGCR8

Homo sapiens

8 data files
FileTypeSize
ENCFF291ITN.bam bam (alignments) 296.2 MB
ENCFF379FKC.bam bam (alignments) 298.1 MB
ENCFF389CTP.fastq fastq (reads) 333.6 MB
ENCFF500PPL.bigWig bigWig (plus strand signal of unique reads) 14.7 MB
ENCFF544FVH.bigWig bigWig (minus strand signal of unique reads) 14.4 MB
ENCFF757BQX.bigWig bigWig (plus strand signal of unique reads) 14.9 MB
ENCFF917MFZ.bigWig bigWig (minus strand signal of unique reads) 14.2 MB
ENCFF933TIF.fastq fastq (reads) 333.2 MB
ENCSR924OLO ENCSR · via encode_api

eCLIP control experiment on K562 against TARDBP

Homo sapiens

8 data files
FileTypeSize
ENCFF250LFZ.bigWig bigWig (plus strand signal of unique reads) 9.3 MB
ENCFF333DTJ.fastq fastq (reads) 266.1 MB
ENCFF394DDJ.bam bam (alignments) 186.6 MB
ENCFF558NTZ.fastq fastq (reads) 250.5 MB
ENCFF607TDB.bigWig bigWig (plus strand signal of unique reads) 9.2 MB
ENCFF887NON.bam bam (alignments) 185.6 MB
ENCFF936VVM.bigWig bigWig (minus strand signal of unique reads) 8.9 MB
ENCFF947JGK.bigWig bigWig (minus strand signal of unique reads) 8.8 MB
ENCSR653CNZ ENCSR · via encode_api

eCLIP control experiment on K562 against TAF15

Homo sapiens

8 data files
FileTypeSize
ENCFF053BXG.bam bam (alignments) 457.1 MB
ENCFF252UPV.bam bam (alignments) 454.8 MB
ENCFF277JPO.bigWig bigWig (minus strand signal of unique reads) 19.5 MB
ENCFF334CSX.bigWig bigWig (plus strand signal of unique reads) 20.1 MB
ENCFF367IMM.bigWig bigWig (minus strand signal of unique reads) 19.4 MB
ENCFF868SVO.fastq fastq (reads) 513.2 MB
ENCFF895IJH.fastq fastq (reads) 519.9 MB
ENCFF908IFQ.bigWig bigWig (plus strand signal of unique reads) 20.2 MB
ENCSR562BJW ENCSR · via encode_api

eCLIP control experiment on K562 against FXR1

Homo sapiens

8 data files
FileTypeSize
ENCFF047HSP.bam bam (alignments) 105.5 MB
ENCFF130TTZ.bigWig bigWig (plus strand signal of unique reads) 4.8 MB
ENCFF376FLH.bigWig bigWig (minus strand signal of unique reads) 4.6 MB
ENCFF585MMC.bigWig bigWig (plus strand signal of unique reads) 4.8 MB
ENCFF589FSV.bam bam (alignments) 105.4 MB
ENCFF608BOA.fastq fastq (reads) 106.9 MB
ENCFF742KQJ.fastq fastq (reads) 107.2 MB
ENCFF773SOP.bigWig bigWig (minus strand signal of unique reads) 4.6 MB
ENCSR344EGD ENCSR · via encode_api

eCLIP control experiment on K562 against RBM22

Homo sapiens

8 data files
FileTypeSize
ENCFF006NOC.bigWig bigWig (plus strand signal of unique reads) 10.9 MB
ENCFF135PIG.fastq fastq (reads) 452.7 MB
ENCFF404SLQ.bigWig bigWig (plus strand signal of unique reads) 10.8 MB
ENCFF422MWK.bigWig bigWig (minus strand signal of unique reads) 10.5 MB
ENCFF556BXK.bam bam (alignments) 241.6 MB
ENCFF663GEE.bigWig bigWig (minus strand signal of unique reads) 10.4 MB
ENCFF672MVA.fastq fastq (reads) 452.6 MB
ENCFF802LNA.bam bam (alignments) 243.5 MB
ENCSR436OZQ ENCSR · via encode_api

Control ChIP-seq in K562

Homo sapiens

14 data files
FileTypeSize
ENCFF037EWV.bam bam (unfiltered alignments) 1.7 GB
ENCFF089EYX.fastq fastq (reads) 1.1 GB
ENCFF242EIX.bam bam (unfiltered alignments) 1.6 GB
ENCFF284ULS.bam bam (unfiltered alignments) 1.7 GB
ENCFF321CYT.bam bam (alignments) 1.3 GB
ENCFF321KCO.bam bam (alignments) 1.2 GB
ENCFF419XJY.fastq fastq (reads) 1.2 GB
ENCFF456BYT.bam bam (alignments) 1.2 GB
ENCFF561BNH.bam bam (unfiltered alignments) 1.6 GB
ENCFF661ZRO.bam bam (alignments) 1.2 GB
ENCFF729KBJ.bam bam (alignments) 1.3 GB
ENCFF788DBU.bam bam (unfiltered alignments) 1.7 GB
ENCFF872FDX.bam bam (alignments) 1.3 GB
ENCFF897DGW.bam bam (unfiltered alignments) 1.6 GB
ENCSR384BDV ENCSR · via encode_api

RNA-seq on K562 cells treated with an shRNA knockdown against CPSF6. (CPSF6_BGKLV36)

Homo sapiens

92 data files
FileTypeSize
ENCFF002PHX.bigWig bigWig (minus strand signal of all reads) 101.9 MB
ENCFF004JCP.bigWig bigWig (minus strand signal of all reads) 86.0 MB
ENCFF019WGC.bigWig bigWig (minus strand signal of unique reads) 77.3 MB
ENCFF078CED.bigWig bigWig (plus strand signal of unique reads) 83.7 MB
ENCFF081BPS.bam bam (transcriptome alignments) 7.3 GB
ENCFF096YZL.bigWig bigWig (plus strand signal of all reads) 87.6 MB
ENCFF105BAG.tsv tsv (gene quantifications) 10.4 MB
ENCFF111NHC.tsv tsv (transcript quantifications) 24.9 MB
ENCFF112VHC.bam bam (alignments) 5.2 GB
ENCFF115LAN.tsv tsv (transcript quantifications) 25.4 MB
ENCFF119KGO.bigWig bigWig (minus strand signal of unique reads) 65.5 MB
ENCFF125CTD.tsv tsv (transcript quantifications) 25.4 MB
ENCFF138WRM.bigWig bigWig (plus strand signal of all reads) 87.4 MB
ENCFF191RBZ.bigWig bigWig (plus strand signal of all reads) 85.5 MB
ENCFF208YGI.bigWig bigWig (plus strand signal of unique reads) 77.9 MB
ENCFF211XHQ.bigWig bigWig (minus strand signal of all reads) 86.1 MB
ENCFF220MCB.bigWig bigWig (minus strand signal of all reads) 86.6 MB
ENCFF226XUE.bam bam (transcriptome alignments) 6.6 GB
ENCFF237PUS.tar tar (differential splicing quantifications) 4.2 MB
ENCFF241MGT.bigWig bigWig (plus strand signal of all reads) 87.3 MB
ENCFF244PPX.tsv tsv (transcript quantifications) 27.4 MB
ENCFF260RMV.tsv tsv (gene quantifications) 9.1 MB
ENCFF260XRA.bigWig bigWig (minus strand signal of all reads) 100.9 MB
ENCFF276VJL.bigWig bigWig (minus strand signal of unique reads) 89.4 MB
ENCFF286CHE.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF288DXK.bigWig bigWig (minus strand signal of all reads) 83.9 MB
ENCFF291ERF.bam bam (alignments) 5.3 GB
ENCFF308FGG.tsv tsv (differential expression quantifications) 4.4 MB
ENCFF308PFP.bigWig bigWig (plus strand signal of all reads) 75.2 MB
ENCFF309PWM.fastq fastq (reads) 3.0 GB
ENCFF322JPD.bam bam (alignments) 5.3 GB
ENCFF332PUX.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF353YAQ.bigWig bigWig (plus strand signal of all reads) 103.3 MB
ENCFF378XVM.tsv tsv (gene quantifications) 10.4 MB
ENCFF392BAM.tsv tsv (gene quantifications) 9.5 MB
ENCFF420ZNS.fastq fastq (reads) 3.6 GB
ENCFF422DUV.bigWig bigWig (minus strand signal of unique reads) 68.3 MB
ENCFF437JAT.bam bam (transcriptome alignments) 8.2 GB
ENCFF438SOK.bam bam (transcriptome alignments) 5.8 GB
ENCFF482EUC.tar tar (differential splicing quantifications) 3.6 MB
ENCFF483OSC.bigWig bigWig (minus strand signal of unique reads) 89.1 MB
ENCFF497KMW.bigWig bigWig (minus strand signal of all reads) 76.5 MB
ENCFF505YFK.bigWig bigWig (minus strand signal of unique reads) 69.7 MB
ENCFF506SDY.bam bam (alignments) 6.6 GB
ENCFF506SOO.bam bam (transcriptome alignments) 5.8 GB
ENCFF507USX.bigWig bigWig (plus strand signal of all reads) 78.0 MB
ENCFF517PQE.bigWig bigWig (plus strand signal of unique reads) 91.4 MB
ENCFF518ZBT.bigWig bigWig (plus strand signal of unique reads) 91.3 MB
ENCFF526GHJ.bam bam (alignments) 5.4 GB
ENCFF541UVI.tsv tsv (transcript quantifications) 27.5 MB
ENCFF541XOX.bigWig bigWig (plus strand signal of all reads) 87.2 MB
ENCFF558LAP.bigWig bigWig (minus strand signal of all reads) 101.9 MB
ENCFF558RJU.bigWig bigWig (minus strand signal of all reads) 74.2 MB
ENCFF578KLC.tsv tsv (gene quantifications) 9.1 MB
ENCFF579LUB.bigWig bigWig (minus strand signal of unique reads) 81.1 MB
ENCFF591EVS.bigWig bigWig (minus strand signal of unique reads) 76.3 MB
ENCFF599UAZ.bigWig bigWig (plus strand signal of unique reads) 67.3 MB
ENCFF609HYZ.bigWig bigWig (plus strand signal of all reads) 103.3 MB
ENCFF637ECN.bigWig bigWig (minus strand signal of all reads) 71.4 MB
ENCFF661YBO.bigWig bigWig (minus strand signal of unique reads) 81.7 MB
ENCFF682UOK.bigWig bigWig (plus strand signal of unique reads) 69.7 MB
ENCFF684BZS.bam bam (alignments) 4.3 GB
ENCFF695XEH.bigWig bigWig (plus strand signal of unique reads) 77.2 MB
ENCFF714OQV.tsv tsv (gene quantifications) 9.5 MB
ENCFF721MWN.tar tar (differential splicing quantifications) 13.8 MB
ENCFF759NHV.bigWig bigWig (plus strand signal of all reads) 72.9 MB
ENCFF761DIV.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF779WVA.bam bam (alignments) 4.3 GB
ENCFF802RDW.bigWig bigWig (minus strand signal of unique reads) 89.5 MB
ENCFF803ELL.bigWig bigWig (plus strand signal of all reads) 90.7 MB
ENCFF804CSC.bigWig bigWig (plus strand signal of unique reads) 91.3 MB
ENCFF808SXM.bigWig bigWig (plus strand signal of unique reads) 79.4 MB
ENCFF829RTV.bigWig bigWig (plus strand signal of unique reads) 71.5 MB
ENCFF833MQH.bigWig bigWig (plus strand signal of unique reads) 82.7 MB
ENCFF852ARJ.bigWig bigWig (minus strand signal of all reads) 89.1 MB
ENCFF865PUM.bigWig bigWig (minus strand signal of unique reads) 76.0 MB
ENCFF881SNB.tsv tsv (differential expression quantifications) 2.0 MB
ENCFF885HMK.bam bam (alignments) 6.5 GB
ENCFF885MFR.bigWig bigWig (plus strand signal of unique reads) 78.0 MB
ENCFF904VNO.fastq fastq (reads) 2.8 GB
ENCFF907BZC.bam bam (transcriptome alignments) 7.2 GB
ENCFF928HOG.fastq fastq (reads) 3.7 GB
ENCFF929VRN.tsv tsv (transcript quantifications) 29.9 MB
ENCFF939TRU.tsv tsv (transcript quantifications) 24.9 MB
ENCFF948FTO.bam bam (alignments) 5.4 GB
ENCFF956SFY.bam bam (alignments) 6.6 GB
ENCFF967WJV.bam bam (alignments) 4.3 GB
ENCFF970HYP.bam bam (alignments) 5.4 GB
ENCFF988LRA.bigWig bigWig (plus strand signal of all reads) 102.3 MB
ENCFF990AGZ.bigWig bigWig (minus strand signal of unique reads) 75.5 MB
ENCFF992KBR.bigWig bigWig (minus strand signal of all reads) 86.1 MB
ENCFF993ERO.tsv tsv (transcript quantifications) 29.9 MB
ENCSR376KLZ ENCSR · via encode_api

eCLIP control experiment on HepG2 against SUPV3L1

Homo sapiens

8 data files
FileTypeSize
ENCFF021OMD.bigWig bigWig (plus strand signal of unique reads) 27.5 MB
ENCFF142AIM.bigWig bigWig (minus strand signal of unique reads) 27.4 MB
ENCFF258APN.fastq fastq (reads) 600.6 MB
ENCFF295JKG.bigWig bigWig (plus strand signal of unique reads) 28.2 MB
ENCFF369GNR.bam bam (alignments) 620.1 MB
ENCFF504PBT.bigWig bigWig (minus strand signal of unique reads) 27.8 MB
ENCFF708EUI.fastq fastq (reads) 541.5 MB
ENCFF737MAB.bam bam (alignments) 611.6 MB
ENCSR752YLF ENCSR · via encode_api

eCLIP control experiment on K562 against SERBP1

Homo sapiens

8 data files
FileTypeSize
ENCFF012GQR.fastq fastq (reads) 484.4 MB
ENCFF070MKB.bigWig bigWig (plus strand signal of unique reads) 13.5 MB
ENCFF166ZIY.bam bam (alignments) 291.2 MB
ENCFF257CGL.bam bam (alignments) 286.0 MB
ENCFF407AHP.bigWig bigWig (minus strand signal of unique reads) 13.1 MB
ENCFF736OAS.bigWig bigWig (plus strand signal of unique reads) 13.2 MB
ENCFF783AZJ.bigWig bigWig (minus strand signal of unique reads) 12.9 MB
ENCFF997VKX.fastq fastq (reads) 492.6 MB
ENCSR376GHG ENCSR · via encode_api

RNA-seq on K562 cells treated with a CRISPR gRNA against FXR2. (FXR2_BGKcLV04)

Homo sapiens

92 data files
FileTypeSize
ENCFF006ECV.tsv tsv (gene quantifications) 9.5 MB
ENCFF008SLH.bigWig bigWig (plus strand signal of all reads) 87.6 MB
ENCFF011WSY.tsv tsv (transcript quantifications) 27.2 MB
ENCFF014ONI.bigWig bigWig (minus strand signal of unique reads) 75.6 MB
ENCFF031KBL.bigWig bigWig (plus strand signal of unique reads) 67.0 MB
ENCFF050ATO.bigWig bigWig (minus strand signal of unique reads) 59.0 MB
ENCFF052BZU.bigWig bigWig (minus strand signal of unique reads) 51.5 MB
ENCFF078HID.bigWig bigWig (plus strand signal of unique reads) 72.0 MB
ENCFF082WPU.tsv tsv (gene quantifications) 9.5 MB
ENCFF085ZXS.bigWig bigWig (minus strand signal of all reads) 66.8 MB
ENCFF093SPS.bigWig bigWig (minus strand signal of all reads) 86.1 MB
ENCFF102VIU.tsv tsv (transcript quantifications) 25.4 MB
ENCFF107JST.fastq fastq (reads) 2.6 GB
ENCFF115BTF.bam bam (alignments) 4.3 GB
ENCFF115UBC.bam bam (alignments) 4.4 GB
ENCFF181NHE.bam bam (alignments) 3.6 GB
ENCFF184JMP.bigWig bigWig (minus strand signal of all reads) 67.8 MB
ENCFF207OBI.bigWig bigWig (minus strand signal of unique reads) 64.9 MB
ENCFF221MHZ.bigWig bigWig (plus strand signal of all reads) 73.7 MB
ENCFF241EUT.bam bam (alignments) 3.6 GB
ENCFF243TKX.tsv tsv (transcript quantifications) 30.0 MB
ENCFF252KOL.bam bam (alignments) 4.4 GB
ENCFF259PVU.bigWig bigWig (minus strand signal of unique reads) 70.2 MB
ENCFF271KII.bigWig bigWig (minus strand signal of unique reads) 75.5 MB
ENCFF280KWC.bam bam (alignments) 3.5 GB
ENCFF295CRN.bam bam (transcriptome alignments) 5.0 GB
ENCFF307SVV.bigWig bigWig (plus strand signal of unique reads) 60.4 MB
ENCFF311OPI.bigWig bigWig (plus strand signal of unique reads) 56.3 MB
ENCFF320XHS.bigWig bigWig (plus strand signal of unique reads) 53.2 MB
ENCFF324HSM.tsv tsv (differential expression quantifications) 4.0 MB
ENCFF324RHF.bam bam (transcriptome alignments) 4.9 GB
ENCFF367RUG.bigWig bigWig (minus strand signal of all reads) 86.2 MB
ENCFF381UTB.tsv tsv (gene quantifications) 10.4 MB
ENCFF383ZEP.tsv tsv (transcript quantifications) 25.0 MB
ENCFF388CMP.bigWig bigWig (plus strand signal of unique reads) 77.8 MB
ENCFF389UYP.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF391OYG.tsv tsv (gene quantifications) 9.1 MB
ENCFF395NPD.bigWig bigWig (plus strand signal of all reads) 61.6 MB
ENCFF396KYT.fastq fastq (reads) 2.7 GB
ENCFF397VRI.bigWig bigWig (plus strand signal of unique reads) 60.5 MB
ENCFF398XVX.bigWig bigWig (plus strand signal of all reads) 68.1 MB
ENCFF425UJK.bigWig bigWig (plus strand signal of all reads) 69.0 MB
ENCFF446RIA.bam bam (transcriptome alignments) 5.3 GB
ENCFF459VAM.bigWig bigWig (plus strand signal of all reads) 76.5 MB
ENCFF462GOQ.tsv tsv (differential expression quantifications) 1.8 MB
ENCFF463HGA.bigWig bigWig (minus strand signal of all reads) 71.9 MB
ENCFF480HQW.tsv tsv (differential expression quantifications) 2.8 MB
ENCFF487SJJ.bam bam (alignments) 3.6 GB
ENCFF492VFE.bam bam (alignments) 3.5 GB
ENCFF507TJL.bigWig bigWig (minus strand signal of all reads) 67.8 MB
ENCFF528NVS.bigWig bigWig (minus strand signal of unique reads) 58.8 MB
ENCFF554UFT.tar tar (differential splicing quantifications) 2.5 MB
ENCFF556PID.bigWig bigWig (minus strand signal of all reads) 60.0 MB
ENCFF557HWF.bigWig bigWig (plus strand signal of all reads) 85.6 MB
ENCFF565MQO.tsv tsv (transcript quantifications) 25.5 MB
ENCFF571UOW.bigWig bigWig (minus strand signal of all reads) 56.5 MB
ENCFF573GRA.bigWig bigWig (minus strand signal of all reads) 60.2 MB
ENCFF573HIO.fastq fastq (reads) 2.6 GB
ENCFF586MIW.tsv tsv (transcript quantifications) 27.3 MB
ENCFF621HUW.tsv tsv (transcript quantifications) 29.9 MB
ENCFF636RGL.bigWig bigWig (minus strand signal of all reads) 75.2 MB
ENCFF668PGW.bam bam (alignments) 4.4 GB
ENCFF689ELZ.bigWig bigWig (minus strand signal of unique reads) 74.9 MB
ENCFF716AAN.bigWig bigWig (minus strand signal of unique reads) 58.8 MB
ENCFF716GYO.bigWig bigWig (minus strand signal of all reads) 77.4 MB
ENCFF732NNT.bam bam (transcriptome alignments) 5.7 GB
ENCFF732WSI.bigWig bigWig (plus strand signal of unique reads) 76.8 MB
ENCFF741EOO.bigWig bigWig (plus strand signal of unique reads) 72.3 MB
ENCFF742DAR.bigWig bigWig (minus strand signal of unique reads) 70.2 MB
ENCFF775EQE.bigWig bigWig (plus strand signal of all reads) 87.6 MB
ENCFF780OGP.tsv tsv (gene quantifications) 9.1 MB
ENCFF782DYG.tsv tsv (differential expression quantifications) 5.5 MB
ENCFF792SFY.bigWig bigWig (minus strand signal of unique reads) 54.7 MB
ENCFF803MQT.bigWig bigWig (plus strand signal of all reads) 58.0 MB
ENCFF807ZFM.bigWig bigWig (plus strand signal of all reads) 69.0 MB
ENCFF811FUQ.bam bam (alignments) 4.2 GB
ENCFF825ICK.bigWig bigWig (minus strand signal of unique reads) 54.7 MB
ENCFF825TML.bigWig bigWig (plus strand signal of all reads) 61.1 MB
ENCFF846SWD.tar tar (differential splicing quantifications) 2.2 MB
ENCFF858NLM.tar tar (differential splicing quantifications) 10.1 MB
ENCFF861QGA.bigWig bigWig (minus strand signal of all reads) 84.0 MB
ENCFF865RKA.bam bam (alignments) 4.3 GB
ENCFF874XXC.fastq fastq (reads) 2.7 GB
ENCFF890CPE.tsv tsv (gene quantifications) 10.4 MB
ENCFF919TKS.bam bam (alignments) 3.5 GB
ENCFF933IAE.bigWig bigWig (plus strand signal of unique reads) 57.1 MB
ENCFF934YSW.bigWig bigWig (plus strand signal of all reads) 79.2 MB
ENCFF938AIQ.tsv tsv (transcript quantifications) 25.0 MB
ENCFF961GLT.bam bam (transcriptome alignments) 4.7 GB
ENCFF962GNB.bam bam (transcriptome alignments) 4.7 GB
ENCFF986TWG.bigWig bigWig (plus strand signal of unique reads) 60.5 MB
ENCFF987CBR.bigWig bigWig (plus strand signal of unique reads) 77.4 MB
ENCSR376FGR ENCSR · via encode_api

RNA-seq on HepG2 cells treated with an shRNA knockdown against SRSF3. (SRSF3_BGHLV35)

Homo sapiens

92 data files
FileTypeSize
ENCFF007JRF.bigWig bigWig (minus strand signal of all reads) 71.0 MB
ENCFF031YBV.tsv tsv (gene quantifications) 9.5 MB
ENCFF091OKV.bigWig bigWig (plus strand signal of all reads) 83.5 MB
ENCFF099QGS.bigWig bigWig (minus strand signal of all reads) 82.1 MB
ENCFF119ZSP.tar tar (differential splicing quantifications) 3.4 MB
ENCFF125ECT.bam bam (alignments) 5.1 GB
ENCFF130SLL.tsv tsv (differential expression quantifications) 2.0 MB
ENCFF173DSA.bigWig bigWig (minus strand signal of all reads) 91.1 MB
ENCFF178CGM.bam bam (transcriptome alignments) 8.0 GB
ENCFF223EAH.bigWig bigWig (minus strand signal of unique reads) 74.9 MB
ENCFF229SMD.bam bam (transcriptome alignments) 7.0 GB
ENCFF230TVJ.tsv tsv (differential expression quantifications) 3.0 MB
ENCFF231QDZ.bigWig bigWig (plus strand signal of unique reads) 76.8 MB
ENCFF237GJZ.tsv tsv (gene quantifications) 9.5 MB
ENCFF237QGT.bigWig bigWig (plus strand signal of unique reads) 65.4 MB
ENCFF247YMQ.tsv tsv (transcript quantifications) 27.4 MB
ENCFF263ZLE.bam bam (alignments) 5.1 GB
ENCFF268FAQ.tsv tsv (transcript quantifications) 25.4 MB
ENCFF274SER.bigWig bigWig (plus strand signal of unique reads) 83.5 MB
ENCFF278GBS.bigWig bigWig (plus strand signal of unique reads) 62.3 MB
ENCFF294JZJ.fastq fastq (reads) 3.6 GB
ENCFF301YGS.bigWig bigWig (minus strand signal of unique reads) 70.9 MB
ENCFF304DSP.fastq fastq (reads) 2.8 GB
ENCFF319HDO.bigWig bigWig (minus strand signal of unique reads) 69.6 MB
ENCFF326ASD.fastq fastq (reads) 3.0 GB
ENCFF329HGG.bigWig bigWig (plus strand signal of unique reads) 83.6 MB
ENCFF333MZJ.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF343EQX.bigWig bigWig (minus strand signal of unique reads) 64.0 MB
ENCFF346SBQ.tar tar (differential splicing quantifications) 15.0 MB
ENCFF354XQE.bigWig bigWig (minus strand signal of unique reads) 65.2 MB
ENCFF365PLL.bam bam (alignments) 6.1 GB
ENCFF367YRD.bam bam (alignments) 6.2 GB
ENCFF371XRK.bigWig bigWig (plus strand signal of unique reads) 71.5 MB
ENCFF372KIZ.bigWig bigWig (minus strand signal of all reads) 79.6 MB
ENCFF389XYQ.tsv tsv (gene quantifications) 10.4 MB
ENCFF392MXP.tsv tsv (differential expression quantifications) 1.6 MB
ENCFF401LEV.bigWig bigWig (minus strand signal of unique reads) 60.9 MB
ENCFF404VDD.fastq fastq (reads) 3.5 GB
ENCFF428CON.bigWig bigWig (plus strand signal of unique reads) 66.7 MB
ENCFF432OHM.bam bam (transcriptome alignments) 6.6 GB
ENCFF443MVG.bigWig bigWig (minus strand signal of all reads) 90.3 MB
ENCFF459QWA.tar tar (differential splicing quantifications) 4.3 MB
ENCFF471TBA.tsv tsv (transcript quantifications) 25.0 MB
ENCFF485KRX.tsv tsv (transcript quantifications) 25.4 MB
ENCFF505RTO.bam bam (alignments) 5.1 GB
ENCFF517ZHJ.bigWig bigWig (minus strand signal of all reads) 78.6 MB
ENCFF528XHO.bam bam (alignments) 4.3 GB
ENCFF530EAC.bam bam (transcriptome alignments) 5.8 GB
ENCFF530OSS.bam bam (alignments) 5.1 GB
ENCFF547XWA.tsv tsv (transcript quantifications) 25.0 MB
ENCFF552JWJ.bigWig bigWig (plus strand signal of all reads) 81.0 MB
ENCFF563PJW.bigWig bigWig (plus strand signal of all reads) 78.0 MB
ENCFF566LUZ.bam bam (alignments) 5.1 GB
ENCFF592AVY.tsv tsv (transcript quantifications) 29.9 MB
ENCFF598SJC.bigWig bigWig (plus strand signal of all reads) 81.0 MB
ENCFF605PLH.bam bam (alignments) 4.3 GB
ENCFF610GKC.tsv tsv (gene quantifications) 9.1 MB
ENCFF610VZU.bigWig bigWig (plus strand signal of unique reads) 71.4 MB
ENCFF616NDA.bigWig bigWig (plus strand signal of all reads) 72.2 MB
ENCFF625NEW.bigWig bigWig (minus strand signal of unique reads) 81.6 MB
ENCFF633JEO.bam bam (alignments) 6.2 GB
ENCFF633TKV.bigWig bigWig (minus strand signal of unique reads) 74.2 MB
ENCFF645RTT.bigWig bigWig (minus strand signal of all reads) 76.5 MB
ENCFF665PEJ.bam bam (transcriptome alignments) 7.1 GB
ENCFF697VPD.bigWig bigWig (minus strand signal of all reads) 66.3 MB
ENCFF701TDS.bigWig bigWig (plus strand signal of unique reads) 83.6 MB
ENCFF707FNA.bigWig bigWig (minus strand signal of all reads) 79.7 MB
ENCFF716VHC.bigWig bigWig (plus strand signal of all reads) 92.6 MB
ENCFF733SKZ.tsv tsv (differential expression quantifications) 4.4 MB
ENCFF735IQM.bigWig bigWig (minus strand signal of all reads) 68.0 MB
ENCFF754ESC.bam bam (alignments) 5.1 GB
ENCFF772GPQ.bigWig bigWig (plus strand signal of unique reads) 72.7 MB
ENCFF772PIO.tsv tsv (gene quantifications) 9.1 MB
ENCFF773NKN.tsv tsv (gene quantifications) 10.4 MB
ENCFF781ETN.bigWig bigWig (minus strand signal of all reads) 91.1 MB
ENCFF798OGN.bam bam (transcriptome alignments) 5.8 GB
ENCFF808OJZ.bam bam (alignments) 4.3 GB
ENCFF809IQA.bigWig bigWig (minus strand signal of unique reads) 69.6 MB
ENCFF820YHQ.bigWig bigWig (minus strand signal of unique reads) 69.7 MB
ENCFF834BGD.bigWig bigWig (plus strand signal of all reads) 92.6 MB
ENCFF852KRZ.bigWig bigWig (plus strand signal of all reads) 69.1 MB
ENCFF856YIN.tsv tsv (transcript quantifications) 27.4 MB
ENCFF869IUX.bigWig bigWig (plus strand signal of all reads) 79.8 MB
ENCFF882MNN.bigWig bigWig (minus strand signal of all reads) 79.7 MB
ENCFF884BCP.bigWig bigWig (minus strand signal of unique reads) 81.5 MB
ENCFF896SAR.bigWig bigWig (plus strand signal of unique reads) 76.0 MB
ENCFF899NYC.bigWig bigWig (plus strand signal of unique reads) 71.4 MB
ENCFF921BZG.bigWig bigWig (minus strand signal of unique reads) 81.6 MB
ENCFF928BWW.bigWig bigWig (plus strand signal of all reads) 67.5 MB
ENCFF935KAV.bigWig bigWig (plus strand signal of all reads) 91.6 MB
ENCFF940DHV.tsv tsv (transcript quantifications) 29.9 MB
ENCFF949HME.bigWig bigWig (plus strand signal of all reads) 81.0 MB
ENCSR334QCK ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) pulldown experiment against PABPN1L

14 data files
FileTypeSize
ENCFF174DZO.tsv tsv (library fraction) 1.1 MB
ENCFF219HWQ.fastq fastq (reads) 387.4 MB
ENCFF285OLQ.tsv tsv (enrichment) 10.0 KB
ENCFF317DKE.tsv tsv (library fraction) 63.9 KB
ENCFF359PFB.tsv tsv (enrichment) 41.0 KB
ENCFF390FGE.bed bed (peaks) 247.1 KB
ENCFF419ZIO.fastq fastq (reads) 435.0 MB
ENCFF749PUO.tsv tsv (enrichment) 168.0 KB
ENCFF807YLK.tsv tsv (library fraction) 265.4 KB
ENCFF822GML.tsv tsv (enrichment) 688.0 KB
ENCFF883BVH.fastq fastq (reads) 714.9 MB
ENCFF925JZI.tsv tsv (library fraction) 15.2 KB
ENCFF988CZO.fastq fastq (reads) 352.2 MB
ENCFF992FMO.fastq fastq (reads) 748.3 MB
ENCSR251ABP ENCSR · via encode_api

RNA-seq on K562 cells treated with an shRNA knockdown against UPF1. (UPF1_BGKLV34)

Homo sapiens

92 data files
FileTypeSize
ENCFF011LYG.bigWig bigWig (minus strand signal of all reads) 110.9 MB
ENCFF014EJC.bam bam (alignments) 6.3 GB
ENCFF021IOE.bam bam (transcriptome alignments) 10.0 GB
ENCFF024ZCL.tsv tsv (transcript quantifications) 27.5 MB
ENCFF027DXP.bam bam (alignments) 5.0 GB
ENCFF029YSA.bigWig bigWig (minus strand signal of all reads) 109.8 MB
ENCFF052LRO.tsv tsv (differential expression quantifications) 3.0 MB
ENCFF061TRZ.tsv tsv (differential expression quantifications) 5.5 MB
ENCFF085AHK.bigWig bigWig (plus strand signal of all reads) 112.1 MB
ENCFF087VUG.bigWig bigWig (plus strand signal of unique reads) 105.5 MB
ENCFF089SVB.bigWig bigWig (minus strand signal of unique reads) 96.1 MB
ENCFF089WNX.tsv tsv (transcript quantifications) 25.3 MB
ENCFF107MPB.tsv tsv (differential expression quantifications) 4.5 MB
ENCFF115EFY.bigWig bigWig (plus strand signal of unique reads) 98.7 MB
ENCFF124OER.bam bam (transcriptome alignments) 8.8 GB
ENCFF128PZK.bigWig bigWig (minus strand signal of unique reads) 111.9 MB
ENCFF130LRB.bigWig bigWig (minus strand signal of unique reads) 103.6 MB
ENCFF168GCF.bigWig bigWig (minus strand signal of all reads) 109.2 MB
ENCFF212URG.bam bam (transcriptome alignments) 8.7 GB
ENCFF220ORO.tsv tsv (transcript quantifications) 24.9 MB
ENCFF243KSD.bam bam (alignments) 6.5 GB
ENCFF243KYH.bam bam (alignments) 7.6 GB
ENCFF257MHZ.tar tar (differential splicing quantifications) 4.3 MB
ENCFF262ABF.fastq fastq (reads) 4.2 GB
ENCFF265JRQ.bigWig bigWig (minus strand signal of unique reads) 90.0 MB
ENCFF274FTK.bigWig bigWig (minus strand signal of unique reads) 100.5 MB
ENCFF286IFK.tsv tsv (transcript quantifications) 25.3 MB
ENCFF304VKV.bigWig bigWig (minus strand signal of all reads) 96.6 MB
ENCFF330MTH.bigWig bigWig (plus strand signal of all reads) 115.3 MB
ENCFF337GVB.bam bam (alignments) 5.0 GB
ENCFF346KJS.bigWig bigWig (plus strand signal of unique reads) 92.0 MB
ENCFF349HGK.bigWig bigWig (plus strand signal of all reads) 98.7 MB
ENCFF350OQK.bigWig bigWig (minus strand signal of all reads) 94.6 MB
ENCFF356HGX.bigWig bigWig (plus strand signal of all reads) 128.8 MB
ENCFF367OKR.tsv tsv (transcript quantifications) 27.5 MB
ENCFF369APJ.bigWig bigWig (plus strand signal of all reads) 129.4 MB
ENCFF384JPZ.bigWig bigWig (minus strand signal of unique reads) 96.7 MB
ENCFF385PCE.bam bam (alignments) 7.9 GB
ENCFF388CKS.tsv tsv (gene quantifications) 9.5 MB
ENCFF390TYO.bam bam (alignments) 6.3 GB
ENCFF399ZJQ.fastq fastq (reads) 3.4 GB
ENCFF406XHI.fastq fastq (reads) 3.3 GB
ENCFF433RYS.bam bam (transcriptome alignments) 7.0 GB
ENCFF448CPI.bigWig bigWig (minus strand signal of unique reads) 88.8 MB
ENCFF449SGL.bigWig bigWig (plus strand signal of all reads) 129.4 MB
ENCFF458YEY.fastq fastq (reads) 4.1 GB
ENCFF469KMD.bigWig bigWig (minus strand signal of all reads) 97.2 MB
ENCFF509JOR.bigWig bigWig (plus strand signal of all reads) 112.4 MB
ENCFF514SJG.tsv tsv (gene quantifications) 9.1 MB
ENCFF515JVN.bigWig bigWig (plus strand signal of unique reads) 98.3 MB
ENCFF540QZM.bigWig bigWig (plus strand signal of unique reads) 114.3 MB
ENCFF559AEX.tar tar (differential splicing quantifications) 17.0 MB
ENCFF575SMB.tsv tsv (transcript quantifications) 29.8 MB
ENCFF590UDH.bigWig bigWig (minus strand signal of unique reads) 96.2 MB
ENCFF600GZL.bigWig bigWig (plus strand signal of unique reads) 115.7 MB
ENCFF601NRW.bigWig bigWig (minus strand signal of all reads) 128.1 MB
ENCFF616HPJ.bigWig bigWig (plus strand signal of unique reads) 115.0 MB
ENCFF632FEO.bam bam (alignments) 6.1 GB
ENCFF654ONC.tsv tsv (gene quantifications) 10.4 MB
ENCFF660AMU.bigWig bigWig (plus strand signal of all reads) 111.6 MB
ENCFF661ZIB.bigWig bigWig (minus strand signal of all reads) 113.5 MB
ENCFF680YWG.bam bam (alignments) 7.9 GB
ENCFF682DLV.bam bam (alignments) 6.3 GB
ENCFF684BDJ.bigWig bigWig (minus strand signal of unique reads) 105.0 MB
ENCFF696ZAR.bigWig bigWig (plus strand signal of all reads) 110.4 MB
ENCFF700DGA.tsv tsv (gene quantifications) 9.1 MB
ENCFF700YJO.bigWig bigWig (plus strand signal of unique reads) 98.1 MB
ENCFF714XHS.tsv tsv (transcript quantifications) 24.9 MB
ENCFF716SOV.bigWig bigWig (minus strand signal of all reads) 128.1 MB
ENCFF716VQE.bigWig bigWig (minus strand signal of unique reads) 86.1 MB
ENCFF723QPU.bigWig bigWig (plus strand signal of unique reads) 102.9 MB
ENCFF727UMO.bigWig bigWig (minus strand signal of unique reads) 112.7 MB
ENCFF736UPN.bigWig bigWig (minus strand signal of all reads) 127.4 MB
ENCFF737KKR.bigWig bigWig (plus strand signal of all reads) 112.4 MB
ENCFF741EOK.bam bam (alignments) 6.3 GB
ENCFF744YTW.tsv tsv (transcript quantifications) 29.9 MB
ENCFF755RIN.tsv tsv (gene quantifications) 10.4 MB
ENCFF758EHH.tsv tsv (gene quantifications) 9.5 MB
ENCFF803ZQS.bigWig bigWig (plus strand signal of unique reads) 107.3 MB
ENCFF852ZKM.bigWig bigWig (plus strand signal of all reads) 97.6 MB
ENCFF864OIM.tar tar (differential splicing quantifications) 5.2 MB
ENCFF868GCT.bigWig bigWig (minus strand signal of all reads) 111.3 MB
ENCFF876FKK.bam bam (transcriptome alignments) 6.9 GB
ENCFF876KXC.bigWig bigWig (plus strand signal of unique reads) 88.1 MB
ENCFF899KBX.tsv tsv (differential expression quantifications) 2.0 MB
ENCFF900LIS.bam bam (alignments) 5.1 GB
ENCFF907DPT.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF919HRM.bam bam (transcriptome alignments) 7.9 GB
ENCFF929XLV.bigWig bigWig (plus strand signal of all reads) 96.1 MB
ENCFF945VAZ.bigWig bigWig (plus strand signal of unique reads) 90.4 MB
ENCFF959WFE.bigWig bigWig (minus strand signal of unique reads) 113.4 MB
ENCFF988EPO.bigWig bigWig (minus strand signal of all reads) 111.4 MB
ENCSR356GCJ ENCSR · via encode_api

eCLIP control experiment on K562 against TIA1

Homo sapiens

11 data files
FileTypeSize
ENCFF165FRB.fastq fastq (reads) 2.3 GB
ENCFF402DIC.bigWig bigWig (plus strand signal of unique reads) 28.1 MB
ENCFF441RYK.fastq fastq (reads) 1.8 GB
ENCFF504YTU.fastq fastq (reads) 2.0 GB
ENCFF523SWX.bigWig bigWig (minus strand signal of unique reads) 27.6 MB
ENCFF608ODO.bam bam (alignments) 262.4 MB
ENCFF644ZWS.bam bam (alignments) 442.4 MB
ENCFF698IQD.bigWig bigWig (plus strand signal of unique reads) 28.6 MB
ENCFF754WQS.fastq fastq (reads) 2.1 GB
ENCFF892JNM.bigWig bigWig (minus strand signal of unique reads) 27.1 MB
ENCFF910OEJ.bam bam (alignments) 445.4 MB
ENCSR056RZV ENCSR · via encode_api

eCLIP control experiment on HepG2 against FUBP3

Homo sapiens

8 data files
FileTypeSize
ENCFF024OZW.fastq fastq (reads) 405.5 MB
ENCFF041QFN.bigWig bigWig (plus strand signal of unique reads) 16.2 MB
ENCFF370QJE.bam bam (alignments) 347.5 MB
ENCFF414YHF.fastq fastq (reads) 450.0 MB
ENCFF802EVV.bigWig bigWig (minus strand signal of unique reads) 16.1 MB
ENCFF864ZGV.bigWig bigWig (plus strand signal of unique reads) 16.4 MB
ENCFF878TBN.bam bam (alignments) 352.9 MB
ENCFF889KML.bigWig bigWig (minus strand signal of unique reads) 15.8 MB
ENCSR174OYC ENCSR · via encode_api

Control shRNA against no target in K562 cells followed by RNA-seq. (NT_BGKLV34)

Homo sapiens

84 data files
FileTypeSize
ENCFF024HQE.bigWig bigWig (plus strand signal of unique reads) 79.5 MB
ENCFF042EZE.bam bam (transcriptome alignments) 6.9 GB
ENCFF042XTY.bigWig bigWig (plus strand signal of unique reads) 95.1 MB
ENCFF046KUI.bigWig bigWig (minus strand signal of unique reads) 87.3 MB
ENCFF046OMI.bam bam (alignments) 6.0 GB
ENCFF052GQT.bam bam (transcriptome alignments) 6.8 GB
ENCFF055IEE.bam bam (alignments) 5.1 GB
ENCFF063FOC.bigWig bigWig (plus strand signal of all reads) 100.5 MB
ENCFF064JGI.bam bam (alignments) 5.3 GB
ENCFF074QTM.bam bam (alignments) 5.3 GB
ENCFF092ZXJ.bigWig bigWig (minus strand signal of unique reads) 83.4 MB
ENCFF108LMW.bam bam (alignments) 4.3 GB
ENCFF117COK.bigWig bigWig (plus strand signal of unique reads) 89.9 MB
ENCFF203TEQ.bigWig bigWig (plus strand signal of unique reads) 95.9 MB
ENCFF214FBA.tsv tsv (transcript quantifications) 24.9 MB
ENCFF226BEG.bigWig bigWig (plus strand signal of all reads) 107.4 MB
ENCFF245UCB.bigWig bigWig (plus strand signal of unique reads) 81.6 MB
ENCFF258DHE.bigWig bigWig (minus strand signal of all reads) 87.9 MB
ENCFF263JLX.tsv tsv (transcript quantifications) 25.3 MB
ENCFF284NAH.bigWig bigWig (plus strand signal of all reads) 89.5 MB
ENCFF290BJB.bigWig bigWig (minus strand signal of unique reads) 93.9 MB
ENCFF310TYD.tsv tsv (gene quantifications) 9.1 MB
ENCFF319ILG.bam bam (transcriptome alignments) 6.0 GB
ENCFF343PCB.bigWig bigWig (minus strand signal of all reads) 99.7 MB
ENCFF347OGR.tsv tsv (transcript quantifications) 25.3 MB
ENCFF351XSJ.bam bam (alignments) 4.8 GB
ENCFF361BPK.fastq fastq (reads) 2.8 GB
ENCFF365TWW.bigWig bigWig (plus strand signal of all reads) 92.8 MB
ENCFF366VLE.tsv tsv (gene quantifications) 9.5 MB
ENCFF377IPQ.bigWig bigWig (minus strand signal of all reads) 91.1 MB
ENCFF398NOG.tsv tsv (transcript quantifications) 27.4 MB
ENCFF410VSI.bigWig bigWig (minus strand signal of all reads) 104.0 MB
ENCFF412PVX.bigWig bigWig (minus strand signal of all reads) 99.4 MB
ENCFF444MWS.bigWig bigWig (minus strand signal of unique reads) 79.8 MB
ENCFF444ZHG.bam bam (alignments) 4.2 GB
ENCFF448QHI.bigWig bigWig (plus strand signal of all reads) 85.2 MB
ENCFF460AWH.tsv tsv (transcript quantifications) 29.8 MB
ENCFF460ZZG.bam bam (transcriptome alignments) 7.9 GB
ENCFF490DNG.bam bam (alignments) 4.9 GB
ENCFF494DGH.bigWig bigWig (minus strand signal of unique reads) 87.8 MB
ENCFF496YBF.bigWig bigWig (plus strand signal of unique reads) 89.9 MB
ENCFF506MMI.tsv tsv (gene quantifications) 10.4 MB
ENCFF508COB.fastq fastq (reads) 3.2 GB
ENCFF510WOF.bigWig bigWig (plus strand signal of unique reads) 89.6 MB
ENCFF521COU.tsv tsv (transcript quantifications) 24.9 MB
ENCFF536VTQ.bigWig bigWig (minus strand signal of unique reads) 92.9 MB
ENCFF564NSH.bigWig bigWig (minus strand signal of unique reads) 92.9 MB
ENCFF573AEW.bigWig bigWig (plus strand signal of all reads) 105.1 MB
ENCFF605WBD.fastq fastq (reads) 3.2 GB
ENCFF607JNT.bam bam (alignments) 4.8 GB
ENCFF618AHY.tsv tsv (gene quantifications) 10.4 MB
ENCFF629SOF.tsv tsv (gene quantifications) 9.1 MB
ENCFF632KUB.bigWig bigWig (plus strand signal of all reads) 107.4 MB
ENCFF641OWS.bigWig bigWig (plus strand signal of all reads) 94.2 MB
ENCFF643MTP.bigWig bigWig (minus strand signal of all reads) 106.4 MB
ENCFF653HXA.bam bam (transcriptome alignments) 5.9 GB
ENCFF663WMC.bigWig bigWig (minus strand signal of unique reads) 87.9 MB
ENCFF682CGN.bigWig bigWig (plus strand signal of all reads) 96.3 MB
ENCFF691JWU.bigWig bigWig (minus strand signal of unique reads) 87.7 MB
ENCFF714UWL.bigWig bigWig (plus strand signal of unique reads) 82.7 MB
ENCFF725LUM.bigWig bigWig (plus strand signal of all reads) 100.8 MB
ENCFF730WGP.bigWig bigWig (minus strand signal of all reads) 87.3 MB
ENCFF731ZKV.tsv tsv (transcript quantifications) 27.4 MB
ENCFF735JRU.bigWig bigWig (minus strand signal of all reads) 106.4 MB
ENCFF742VPH.bigWig bigWig (plus strand signal of unique reads) 94.9 MB
ENCFF768UGL.bigWig bigWig (minus strand signal of all reads) 83.6 MB
ENCFF782HCG.bigWig bigWig (minus strand signal of all reads) 98.8 MB
ENCFF791DES.tsv tsv (gene quantifications) 9.5 MB
ENCFF793JWV.tsv tsv (transcript quantifications) 29.9 MB
ENCFF803MMD.bam bam (alignments) 4.2 GB
ENCFF823LBA.bam bam (alignments) 5.8 GB
ENCFF826EEI.fastq fastq (reads) 2.8 GB
ENCFF842QUR.bigWig bigWig (minus strand signal of unique reads) 80.5 MB
ENCFF862JRP.bigWig bigWig (plus strand signal of unique reads) 88.6 MB
ENCFF862NDH.bigWig bigWig (plus strand signal of unique reads) 85.6 MB
ENCFF864CYK.bigWig bigWig (minus strand signal of unique reads) 86.7 MB
ENCFF869LXL.bigWig bigWig (plus strand signal of all reads) 100.0 MB
ENCFF877NSE.bam bam (alignments) 6.0 GB
ENCFF901OAA.bam bam (transcriptome alignments) 6.9 GB
ENCFF902UHG.bigWig bigWig (minus strand signal of all reads) 93.1 MB
ENCFF926DNC.bigWig bigWig (plus strand signal of all reads) 88.4 MB
ENCFF934KOV.bigWig bigWig (minus strand signal of unique reads) 77.2 MB
ENCFF994NZR.bigWig bigWig (minus strand signal of all reads) 94.6 MB
ENCFF996MKP.bigWig bigWig (plus strand signal of unique reads) 89.9 MB
ENCSR735QJO ENCSR · via encode_api

Control ChIP-seq on HepG2

Homo sapiens

14 data files
FileTypeSize
ENCFF101DEV.fastq fastq (reads) 1008.5 MB
ENCFF110QIK.bam bam (unfiltered alignments) 1.5 GB
ENCFF234CES.bam bam (unfiltered alignments) 1.4 GB
ENCFF253UKR.bam bam (alignments) 1.0 GB
ENCFF279QEN.bam bam (alignments) 1.1 GB
ENCFF375WCZ.bam bam (alignments) 1.0 GB
ENCFF426URQ.fastq fastq (reads) 1.1 GB
ENCFF440KCS.bam bam (alignments) 1.0 GB
ENCFF526GBB.bam bam (unfiltered alignments) 1.4 GB
ENCFF530LBO.bam bam (unfiltered alignments) 1.5 GB
ENCFF578XGS.bam bam (alignments) 1.1 GB
ENCFF644WGQ.bam bam (unfiltered alignments) 1.4 GB
ENCFF705CKX.bam bam (alignments) 1.2 GB
ENCFF970DLP.bam bam (unfiltered alignments) 1.5 GB
ENCSR352VNP ENCSR · via encode_api

Control ChIP-seq on HepG2

Homo sapiens

14 data files
FileTypeSize
ENCFF060VZM.bam bam (alignments) 1.1 GB
ENCFF079JOF.bam bam (unfiltered alignments) 1.6 GB
ENCFF133XRJ.bam bam (unfiltered alignments) 1.6 GB
ENCFF137JPI.bam bam (alignments) 1.2 GB
ENCFF269ATE.fastq fastq (reads) 1.1 GB
ENCFF324YZM.bam bam (unfiltered alignments) 1.6 GB
ENCFF342ZZN.bam bam (alignments) 1.2 GB
ENCFF442FJZ.fastq fastq (reads) 993.9 MB
ENCFF500AAN.bam bam (alignments) 1.1 GB
ENCFF662VGN.bam bam (unfiltered alignments) 1.4 GB
ENCFF751JIE.bam bam (unfiltered alignments) 1.4 GB
ENCFF809MGU.bam bam (alignments) 1.2 GB
ENCFF881JKI.bam bam (alignments) 1.1 GB
ENCFF920RYN.bam bam (unfiltered alignments) 1.4 GB
ENCSR896CFV ENCSR · via encode_api

RNA-seq on HepG2 cells treated with an shRNA knockdown against SF3B1. (SF3B1_BGHLV35)

Homo sapiens

92 data files
FileTypeSize
ENCFF003FJQ.bigWig bigWig (minus strand signal of unique reads) 65.1 MB
ENCFF017QPR.bigWig bigWig (minus strand signal of unique reads) 63.9 MB
ENCFF077HDA.bigWig bigWig (plus strand signal of unique reads) 73.8 MB
ENCFF077RNE.bigWig bigWig (minus strand signal of unique reads) 66.7 MB
ENCFF103PJR.bigWig bigWig (plus strand signal of all reads) 73.7 MB
ENCFF116SUH.bigWig bigWig (minus strand signal of all reads) 72.1 MB
ENCFF122UAN.bigWig bigWig (minus strand signal of all reads) 63.5 MB
ENCFF128YNY.bigWig bigWig (minus strand signal of unique reads) 72.2 MB
ENCFF134OIU.bam bam (alignments) 5.6 GB
ENCFF154VJU.tsv tsv (transcript quantifications) 27.3 MB
ENCFF157XQC.bigWig bigWig (plus strand signal of unique reads) 66.9 MB
ENCFF169UPK.bigWig bigWig (minus strand signal of all reads) 80.6 MB
ENCFF190ZBP.bigWig bigWig (minus strand signal of all reads) 64.5 MB
ENCFF221OUM.bigWig bigWig (plus strand signal of unique reads) 68.6 MB
ENCFF227RGG.tsv tsv (gene quantifications) 10.4 MB
ENCFF239HCE.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF243BZZ.fastq fastq (reads) 3.1 GB
ENCFF283XLQ.bigWig bigWig (minus strand signal of all reads) 72.4 MB
ENCFF297NUJ.bigWig bigWig (minus strand signal of all reads) 72.4 MB
ENCFF298EKL.tsv tsv (transcript quantifications) 25.4 MB
ENCFF306KJN.tar tar (differential splicing quantifications) 14.7 MB
ENCFF308ZEV.tsv tsv (transcript quantifications) 25.0 MB
ENCFF311WHS.tsv tsv (transcript quantifications) 25.0 MB
ENCFF316LQX.bam bam (transcriptome alignments) 6.5 GB
ENCFF319VHE.bigWig bigWig (minus strand signal of unique reads) 57.3 MB
ENCFF349YJR.bam bam (alignments) 5.5 GB
ENCFF350JEN.fastq fastq (reads) 3.2 GB
ENCFF373IQW.bam bam (alignments) 4.7 GB
ENCFF389LHG.bigWig bigWig (plus strand signal of all reads) 80.9 MB
ENCFF400JIZ.bam bam (alignments) 5.6 GB
ENCFF413CTI.tsv tsv (transcript quantifications) 29.9 MB
ENCFF432HKU.bigWig bigWig (minus strand signal of unique reads) 65.0 MB
ENCFF435WEM.bigWig bigWig (minus strand signal of all reads) 72.4 MB
ENCFF463FJZ.bigWig bigWig (plus strand signal of unique reads) 67.7 MB
ENCFF465NDY.bam bam (alignments) 4.9 GB
ENCFF471CBD.tar tar (differential splicing quantifications) 4.3 MB
ENCFF472RKH.bam bam (transcriptome alignments) 5.7 GB
ENCFF474OSW.fastq fastq (reads) 2.9 GB
ENCFF480XTM.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF483VJX.bigWig bigWig (minus strand signal of all reads) 80.6 MB
ENCFF484EOO.bigWig bigWig (plus strand signal of all reads) 66.0 MB
ENCFF492IOZ.fastq fastq (reads) 2.8 GB
ENCFF502MXU.bigWig bigWig (plus strand signal of unique reads) 61.2 MB
ENCFF513ZNV.bam bam (transcriptome alignments) 7.3 GB
ENCFF517AEL.bigWig bigWig (minus strand signal of all reads) 70.5 MB
ENCFF528PIZ.tsv tsv (differential expression quantifications) 2.0 MB
ENCFF534YKX.bigWig bigWig (plus strand signal of unique reads) 65.8 MB
ENCFF544VWD.bam bam (alignments) 5.0 GB
ENCFF545FCT.tsv tsv (differential expression quantifications) 4.3 MB
ENCFF547WRY.bigWig bigWig (minus strand signal of unique reads) 65.9 MB
ENCFF567GET.tsv tsv (gene quantifications) 9.5 MB
ENCFF591ABA.bigWig bigWig (plus strand signal of all reads) 73.9 MB
ENCFF595ZMW.bam bam (alignments) 4.6 GB
ENCFF603YPG.bigWig bigWig (plus strand signal of all reads) 82.2 MB
ENCFF610TFS.tsv tsv (transcript quantifications) 27.4 MB
ENCFF610YJC.tsv tsv (gene quantifications) 9.1 MB
ENCFF614FDU.bam bam (alignments) 4.2 GB
ENCFF616ZVT.bigWig bigWig (minus strand signal of all reads) 61.8 MB
ENCFF620URT.bam bam (transcriptome alignments) 5.7 GB
ENCFF630JIL.bigWig bigWig (plus strand signal of unique reads) 67.0 MB
ENCFF634ZAC.bigWig bigWig (plus strand signal of all reads) 70.0 MB
ENCFF648VIA.tsv tsv (transcript quantifications) 25.4 MB
ENCFF656LNV.tsv tsv (gene quantifications) 10.4 MB
ENCFF670XSN.bigWig bigWig (plus strand signal of unique reads) 59.0 MB
ENCFF686NSC.bam bam (alignments) 4.7 GB
ENCFF721MFI.bigWig bigWig (plus strand signal of all reads) 73.9 MB
ENCFF732LFZ.bigWig bigWig (plus strand signal of unique reads) 61.5 MB
ENCFF733KMS.bigWig bigWig (plus strand signal of unique reads) 66.9 MB
ENCFF733XAC.bigWig bigWig (plus strand signal of all reads) 82.2 MB
ENCFF744BGI.tsv tsv (gene quantifications) 9.1 MB
ENCFF752RJP.tsv tsv (gene quantifications) 9.5 MB
ENCFF753TRB.bigWig bigWig (minus strand signal of unique reads) 72.3 MB
ENCFF754ZGA.bigWig bigWig (minus strand signal of unique reads) 71.7 MB
ENCFF775HRY.bam bam (transcriptome alignments) 6.5 GB
ENCFF779QKY.tar tar (differential splicing quantifications) 3.3 MB
ENCFF799IDC.bigWig bigWig (minus strand signal of unique reads) 64.9 MB
ENCFF800KRU.bigWig bigWig (minus strand signal of all reads) 68.4 MB
ENCFF820RZS.bigWig bigWig (plus strand signal of all reads) 73.7 MB
ENCFF831NEJ.bigWig bigWig (minus strand signal of unique reads) 59.6 MB
ENCFF839CJZ.bigWig bigWig (plus strand signal of all reads) 63.3 MB
ENCFF882YAT.bam bam (transcriptome alignments) 6.5 GB
ENCFF889YFX.bam bam (alignments) 5.0 GB
ENCFF890IPX.bigWig bigWig (plus strand signal of unique reads) 74.4 MB
ENCFF890LTW.bigWig bigWig (minus strand signal of all reads) 79.5 MB
ENCFF891WHI.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF892FJP.bigWig bigWig (plus strand signal of all reads) 64.8 MB
ENCFF911MWC.bam bam (alignments) 4.1 GB
ENCFF932PFU.tsv tsv (transcript quantifications) 29.9 MB
ENCFF932UCY.bigWig bigWig (plus strand signal of unique reads) 74.3 MB
ENCFF960TBG.bigWig bigWig (minus strand signal of unique reads) 59.7 MB
ENCFF981KAR.bigWig bigWig (plus strand signal of all reads) 71.8 MB
ENCFF983WAW.bam bam (alignments) 4.1 GB
ENCSR462HQR ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) input control experiment of RBMS3 and RBM4B

1 data file
FileTypeSize
ENCFF224QDZ.fastq fastq (reads) 343.4 MB
ENCSR688GVV ENCSR · via encode_api

RNA-seq on K562 cells treated with an shRNA knockdown against FTO. (FTO_BGKLV36)

Homo sapiens

92 data files
FileTypeSize
ENCFF005HTY.bigWig bigWig (plus strand signal of unique reads) 78.1 MB
ENCFF012NZS.bam bam (transcriptome alignments) 5.0 GB
ENCFF035HZU.bigWig bigWig (plus strand signal of unique reads) 68.6 MB
ENCFF053IZG.bam bam (alignments) 3.1 GB
ENCFF061FUT.bigWig bigWig (minus strand signal of unique reads) 66.6 MB
ENCFF082ZQU.bigWig bigWig (minus strand signal of all reads) 78.4 MB
ENCFF089RGE.bigWig bigWig (minus strand signal of all reads) 86.2 MB
ENCFF102ARG.bam bam (transcriptome alignments) 4.5 GB
ENCFF111XGG.bigWig bigWig (minus strand signal of all reads) 86.5 MB
ENCFF118BHN.bigWig bigWig (plus strand signal of unique reads) 68.0 MB
ENCFF139JVG.bam bam (alignments) 3.7 GB
ENCFF183WPS.bigWig bigWig (minus strand signal of unique reads) 67.0 MB
ENCFF193NZK.tsv tsv (transcript quantifications) 27.3 MB
ENCFF193YVL.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF205PXD.bigWig bigWig (minus strand signal of unique reads) 62.3 MB
ENCFF286RQB.bam bam (alignments) 3.1 GB
ENCFF295LLG.bam bam (alignments) 3.1 GB
ENCFF304TUF.bam bam (alignments) 3.1 GB
ENCFF312WCV.bigWig bigWig (minus strand signal of unique reads) 71.2 MB
ENCFF322LCU.bigWig bigWig (minus strand signal of all reads) 64.7 MB
ENCFF327DQB.bigWig bigWig (plus strand signal of all reads) 78.3 MB
ENCFF335OFH.tsv tsv (transcript quantifications) 24.9 MB
ENCFF336USX.tsv tsv (transcript quantifications) 25.4 MB
ENCFF344UWK.bam bam (alignments) 3.1 GB
ENCFF357NWI.bigWig bigWig (plus strand signal of all reads) 66.0 MB
ENCFF358HRE.bigWig bigWig (plus strand signal of all reads) 70.4 MB
ENCFF359SVE.bigWig bigWig (plus strand signal of unique reads) 72.3 MB
ENCFF373QMA.tar tar (differential splicing quantifications) 3.2 MB
ENCFF381SPV.tsv tsv (transcript quantifications) 27.4 MB
ENCFF386AFW.tsv tsv (transcript quantifications) 25.4 MB
ENCFF387SRT.bam bam (alignments) 3.1 GB
ENCFF390YLD.bigWig bigWig (minus strand signal of unique reads) 59.1 MB
ENCFF401TEJ.tar tar (differential splicing quantifications) 3.6 MB
ENCFF434VEP.bigWig bigWig (plus strand signal of unique reads) 72.7 MB
ENCFF468TXI.bam bam (transcriptome alignments) 4.5 GB
ENCFF471MUK.bigWig bigWig (plus strand signal of all reads) 76.1 MB
ENCFF473HEA.bigWig bigWig (minus strand signal of unique reads) 75.5 MB
ENCFF523VBX.tsv tsv (transcript quantifications) 29.9 MB
ENCFF525MIV.bigWig bigWig (plus strand signal of all reads) 76.9 MB
ENCFF552QFO.bigWig bigWig (plus strand signal of all reads) 79.8 MB
ENCFF578TUI.tsv tsv (gene quantifications) 10.4 MB
ENCFF581FMX.bigWig bigWig (plus strand signal of unique reads) 77.7 MB
ENCFF585DOI.fastq fastq (reads) 2.2 GB
ENCFF590OBX.bigWig bigWig (plus strand signal of all reads) 87.6 MB
ENCFF619YRF.bigWig bigWig (minus strand signal of all reads) 72.5 MB
ENCFF620KGA.bam bam (alignments) 3.7 GB
ENCFF627VXJ.tsv tsv (transcript quantifications) 24.9 MB
ENCFF630ISB.bigWig bigWig (minus strand signal of unique reads) 76.1 MB
ENCFF644HMG.fastq fastq (reads) 2.2 GB
ENCFF660MBS.bigWig bigWig (minus strand signal of all reads) 77.3 MB
ENCFF684IKY.bigWig bigWig (plus strand signal of all reads) 87.6 MB
ENCFF689YWQ.tsv tsv (transcript quantifications) 29.9 MB
ENCFF691SLY.bigWig bigWig (minus strand signal of all reads) 75.1 MB
ENCFF698ZJL.bigWig bigWig (plus strand signal of unique reads) 63.8 MB
ENCFF703BOH.bigWig bigWig (minus strand signal of unique reads) 62.8 MB
ENCFF705OWK.bigWig bigWig (minus strand signal of all reads) 86.5 MB
ENCFF706DPN.tsv tsv (gene quantifications) 9.1 MB
ENCFF714BYZ.bigWig bigWig (plus strand signal of all reads) 67.6 MB
ENCFF714TAW.bigWig bigWig (plus strand signal of unique reads) 64.1 MB
ENCFF729WEC.bigWig bigWig (minus strand signal of all reads) 77.3 MB
ENCFF743BGX.bigWig bigWig (plus strand signal of all reads) 78.3 MB
ENCFF748YAJ.bam bam (transcriptome alignments) 5.1 GB
ENCFF752ENJ.bigWig bigWig (plus strand signal of all reads) 87.3 MB
ENCFF754JUR.tsv tsv (differential expression quantifications) 2.0 MB
ENCFF768KJN.bam bam (alignments) 3.8 GB
ENCFF768ZAA.bigWig bigWig (minus strand signal of all reads) 69.1 MB
ENCFF796DBF.tar tar (differential splicing quantifications) 13.3 MB
ENCFF802IIK.bigWig bigWig (plus strand signal of all reads) 73.9 MB
ENCFF821WEY.fastq fastq (reads) 2.2 GB
ENCFF822MHT.bigWig bigWig (minus strand signal of all reads) 76.0 MB
ENCFF824GJE.tsv tsv (gene quantifications) 10.4 MB
ENCFF826FQP.tsv tsv (gene quantifications) 9.5 MB
ENCFF848DXS.tsv tsv (gene quantifications) 9.1 MB
ENCFF852ZWR.bigWig bigWig (minus strand signal of unique reads) 70.6 MB
ENCFF858PDM.tsv tsv (differential expression quantifications) 5.5 MB
ENCFF864UWL.fastq fastq (reads) 2.2 GB
ENCFF873OVE.bam bam (alignments) 3.8 GB
ENCFF875TXG.tsv tsv (differential expression quantifications) 4.4 MB
ENCFF879HMG.bigWig bigWig (plus strand signal of unique reads) 60.8 MB
ENCFF882NHC.bigWig bigWig (plus strand signal of unique reads) 68.2 MB
ENCFF887YAR.bam bam (transcriptome alignments) 4.4 GB
ENCFF889PQT.bam bam (alignments) 3.8 GB
ENCFF893YOJ.bigWig bigWig (minus strand signal of unique reads) 76.3 MB
ENCFF899UGC.bigWig bigWig (plus strand signal of unique reads) 77.1 MB
ENCFF926KZH.bigWig bigWig (minus strand signal of all reads) 66.7 MB
ENCFF930LYD.tsv tsv (gene quantifications) 9.5 MB
ENCFF940XES.bigWig bigWig (minus strand signal of unique reads) 66.8 MB
ENCFF943YWE.bam bam (transcriptome alignments) 4.3 GB
ENCFF969KZK.bam bam (alignments) 3.8 GB
ENCFF971QUT.bigWig bigWig (plus strand signal of unique reads) 68.1 MB
ENCFF979TEP.bigWig bigWig (minus strand signal of unique reads) 66.4 MB
ENCFF993TNZ.tsv tsv (differential expression quantifications) 2.8 MB
ENCSR718EWL ENCSR · via encode_api

Control shRNA against no target in K562 cells followed by RNA-seq. (NT_BGKLV38)

Homo sapiens

84 data files
FileTypeSize
ENCFF004ZOV.tsv tsv (transcript quantifications) 24.9 MB
ENCFF018BNP.bigWig bigWig (plus strand signal of unique reads) 117.3 MB
ENCFF025ZUI.bigWig bigWig (plus strand signal of unique reads) 112.5 MB
ENCFF036HSQ.bigWig bigWig (minus strand signal of all reads) 116.1 MB
ENCFF038ILT.bigWig bigWig (plus strand signal of unique reads) 111.2 MB
ENCFF047XXE.bigWig bigWig (minus strand signal of unique reads) 106.9 MB
ENCFF060SQY.tsv tsv (transcript quantifications) 25.3 MB
ENCFF072YKX.bigWig bigWig (plus strand signal of unique reads) 111.2 MB
ENCFF079NIV.bigWig bigWig (plus strand signal of all reads) 129.8 MB
ENCFF092TUP.tsv tsv (transcript quantifications) 27.5 MB
ENCFF113MXN.fastq fastq (reads) 3.3 GB
ENCFF150LVD.bigWig bigWig (minus strand signal of unique reads) 102.5 MB
ENCFF153FJB.bigWig bigWig (minus strand signal of unique reads) 108.4 MB
ENCFF161KZV.bam bam (transcriptome alignments) 8.9 GB
ENCFF176HWT.bigWig bigWig (plus strand signal of all reads) 112.2 MB
ENCFF176VLB.bigWig bigWig (plus strand signal of all reads) 120.9 MB
ENCFF183DSU.tsv tsv (gene quantifications) 9.5 MB
ENCFF184PBF.bam bam (transcriptome alignments) 8.8 GB
ENCFF186ERV.bigWig bigWig (plus strand signal of all reads) 132.9 MB
ENCFF219DGH.tsv tsv (transcript quantifications) 29.8 MB
ENCFF223ARC.bigWig bigWig (minus strand signal of all reads) 131.3 MB
ENCFF223RSI.bigWig bigWig (minus strand signal of unique reads) 102.7 MB
ENCFF232TUU.bigWig bigWig (plus strand signal of all reads) 124.2 MB
ENCFF248RNX.tsv tsv (gene quantifications) 9.5 MB
ENCFF256IUA.bigWig bigWig (minus strand signal of all reads) 113.3 MB
ENCFF266DWI.tsv tsv (gene quantifications) 9.1 MB
ENCFF310FAW.bigWig bigWig (minus strand signal of unique reads) 115.3 MB
ENCFF310OHO.bam bam (alignments) 6.9 GB
ENCFF312AZX.tsv tsv (gene quantifications) 10.4 MB
ENCFF326FJX.bigWig bigWig (plus strand signal of unique reads) 103.5 MB
ENCFF328JRU.bigWig bigWig (minus strand signal of all reads) 110.8 MB
ENCFF332OQX.bigWig bigWig (minus strand signal of all reads) 128.2 MB
ENCFF339KVU.bigWig bigWig (plus strand signal of all reads) 118.3 MB
ENCFF345KJX.bam bam (transcriptome alignments) 8.8 GB
ENCFF347JDZ.bigWig bigWig (minus strand signal of unique reads) 114.7 MB
ENCFF356JOV.bam bam (transcriptome alignments) 7.7 GB
ENCFF357AKH.fastq fastq (reads) 3.4 GB
ENCFF374QAQ.bam bam (alignments) 6.9 GB
ENCFF402BMV.tsv tsv (transcript quantifications) 24.9 MB
ENCFF409FXM.fastq fastq (reads) 3.8 GB
ENCFF478ZCG.bam bam (alignments) 5.5 GB
ENCFF495TEL.tsv tsv (transcript quantifications) 29.9 MB
ENCFF496PQS.bam bam (alignments) 5.4 GB
ENCFF526LWQ.bigWig bigWig (plus strand signal of unique reads) 117.2 MB
ENCFF554WHF.bigWig bigWig (plus strand signal of all reads) 124.2 MB
ENCFF558CGR.bigWig bigWig (plus strand signal of unique reads) 110.8 MB
ENCFF587FCB.tsv tsv (gene quantifications) 10.4 MB
ENCFF602QRO.bigWig bigWig (minus strand signal of all reads) 122.7 MB
ENCFF609DHP.bigWig bigWig (minus strand signal of all reads) 110.6 MB
ENCFF611PBI.bigWig bigWig (plus strand signal of unique reads) 111.8 MB
ENCFF637YHY.bigWig bigWig (minus strand signal of unique reads) 108.6 MB
ENCFF639YJK.bigWig bigWig (minus strand signal of unique reads) 114.6 MB
ENCFF648UUE.tsv tsv (transcript quantifications) 27.5 MB
ENCFF674NCB.bigWig bigWig (minus strand signal of unique reads) 108.4 MB
ENCFF676YQL.bigWig bigWig (minus strand signal of all reads) 116.2 MB
ENCFF682YFQ.bigWig bigWig (plus strand signal of unique reads) 104.9 MB
ENCFF684YUJ.bam bam (alignments) 4.8 GB
ENCFF693FRG.bam bam (alignments) 6.0 GB
ENCFF698ZGA.fastq fastq (reads) 3.8 GB
ENCFF699ZGX.tsv tsv (gene quantifications) 9.1 MB
ENCFF703FRL.bigWig bigWig (plus strand signal of all reads) 117.6 MB
ENCFF713RDR.bam bam (alignments) 4.7 GB
ENCFF718KIM.bigWig bigWig (plus strand signal of unique reads) 105.1 MB
ENCFF727SJC.bigWig bigWig (minus strand signal of unique reads) 100.8 MB
ENCFF738NAI.bam bam (transcriptome alignments) 10.2 GB
ENCFF743GZQ.bam bam (alignments) 6.0 GB
ENCFF804AZA.bigWig bigWig (minus strand signal of all reads) 121.4 MB
ENCFF807KRO.bigWig bigWig (plus strand signal of all reads) 123.0 MB
ENCFF811UUL.bigWig bigWig (plus strand signal of unique reads) 109.8 MB
ENCFF824KJT.bam bam (alignments) 5.8 GB
ENCFF830YBE.bigWig bigWig (minus strand signal of unique reads) 109.8 MB
ENCFF876TYL.bigWig bigWig (plus strand signal of all reads) 112.7 MB
ENCFF886MZT.tsv tsv (transcript quantifications) 25.4 MB
ENCFF903AVO.bigWig bigWig (plus strand signal of unique reads) 118.1 MB
ENCFF908CYQ.bam bam (alignments) 4.7 GB
ENCFF917GUJ.bigWig bigWig (plus strand signal of all reads) 132.9 MB
ENCFF940VNG.bigWig bigWig (minus strand signal of unique reads) 109.3 MB
ENCFF943ICV.bam bam (transcriptome alignments) 7.6 GB
ENCFF948XHV.bigWig bigWig (minus strand signal of all reads) 122.7 MB
ENCFF953BTD.bigWig bigWig (minus strand signal of all reads) 118.8 MB
ENCFF971OQY.bam bam (alignments) 6.7 GB
ENCFF979MAT.bigWig bigWig (minus strand signal of all reads) 131.3 MB
ENCFF995IVQ.bam bam (alignments) 5.4 GB
ENCFF999OFR.bigWig bigWig (plus strand signal of all reads) 115.4 MB
ENCSR895TTM ENCSR · via encode_api

eCLIP control experiment on HepG2 against SUGP2

Homo sapiens

8 data files
FileTypeSize
ENCFF021LLL.bam bam (alignments) 786.3 MB
ENCFF032POO.bigWig bigWig (plus strand signal of unique reads) 34.7 MB
ENCFF059GAD.bigWig bigWig (minus strand signal of unique reads) 34.2 MB
ENCFF126HSC.fastq fastq (reads) 780.1 MB
ENCFF245GQM.bigWig bigWig (minus strand signal of unique reads) 33.8 MB
ENCFF496GNO.bigWig bigWig (plus strand signal of unique reads) 34.3 MB
ENCFF598EKW.fastq fastq (reads) 707.9 MB
ENCFF734JUL.bam bam (alignments) 796.4 MB
ENCSR785VKF ENCSR · via encode_api

eCLIP control experiment on HepG2 against DROSHA

Homo sapiens

8 data files
FileTypeSize
ENCFF058SWB.bigWig bigWig (plus strand signal of unique reads) 24.7 MB
ENCFF064NLH.fastq fastq (reads) 404.8 MB
ENCFF485KGB.bigWig bigWig (minus strand signal of unique reads) 24.6 MB
ENCFF687BMD.fastq fastq (reads) 448.1 MB
ENCFF797RXZ.bam bam (alignments) 495.5 MB
ENCFF854DJS.bigWig bigWig (plus strand signal of unique reads) 25.2 MB
ENCFF960QIE.bam bam (alignments) 486.8 MB
ENCFF991KAM.bigWig bigWig (minus strand signal of unique reads) 24.1 MB
ENCSR073DSH ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) pulldown experiment against SRSF11

13 data files
FileTypeSize
ENCFF040OXG.fastq fastq (reads) 485.0 MB
ENCFF186POK.tsv tsv (library fraction) 1.1 MB
ENCFF205NWX.fastq fastq (reads) 488.1 MB
ENCFF206YND.tsv tsv (library fraction) 15.2 KB
ENCFF260EGH.tsv tsv (enrichment) 688.0 KB
ENCFF279RSC.tsv tsv (library fraction) 63.9 KB
ENCFF283VSZ.tsv tsv (library fraction) 265.3 KB
ENCFF431TKD.tsv tsv (enrichment) 10.0 KB
ENCFF621BGN.tsv tsv (enrichment) 41.0 KB
ENCFF795EEX.fastq fastq (reads) 408.0 MB
ENCFF820GEE.tsv tsv (enrichment) 168.0 KB
ENCFF828WZL.fastq fastq (reads) 558.8 MB
ENCFF877DUW.fastq fastq (reads) 439.3 MB
ENCSR850WUE ENCSR · via encode_api

RBM15 ChIP-seq in K562

Homo sapiens

62 data files
FileTypeSize
ENCFF041SSZ.bam bam (unfiltered alignments) 487.8 MB
ENCFF061CWY.bed bed (peaks and background as input for IDR) 5.5 MB
ENCFF064RLS.fastq fastq (reads) 380.5 MB
ENCFF091TCH.bed bed (IDR thresholded peaks) 5.1 KB
ENCFF106LTP.bed bed (IDR ranked peaks) 653.4 KB
ENCFF196ARZ.bigWig bigWig (fold change over control) 300.0 MB
ENCFF212ABS.bed bed (peaks and background as input for IDR) 2.8 MB
ENCFF226WWY.bigBed bigBed (IDR thresholded peaks) 75.7 KB
ENCFF235FTV.bigBed bigBed (peaks and background as input for IDR) 12.8 MB
ENCFF254WSM.bam bam (unfiltered alignments) 489.8 MB
ENCFF256CSL.bigWig bigWig (signal p-value) 557.9 MB
ENCFF259RSX.bam bam (unfiltered alignments) 499.2 MB
ENCFF278SFK.bed bed (peaks and background as input for IDR) 2.0 MB
ENCFF312KVO.bam bam (unfiltered alignments) 497.5 MB
ENCFF322KBR.bigWig bigWig (fold change over control) 565.9 MB
ENCFF324ECL.bed bed (IDR ranked peaks) 252.2 KB
ENCFF325TSC.bed bed (peaks and background as input for IDR) 2.1 MB
ENCFF337FVY.fastq fastq (reads) 399.2 MB
ENCFF390DNG.bam bam (alignments) 192.0 MB
ENCFF402MOS.bam bam (alignments) 239.7 MB
ENCFF419YDK.bam bam (alignments) 200.4 MB
ENCFF426FMH.bigBed bigBed (IDR thresholded peaks) 66.7 KB
ENCFF429VRU.bed bed (IDR ranked peaks) 89.9 KB
ENCFF431BUL.bam bam (unfiltered alignments) 489.6 MB
ENCFF439LQK.bigWig bigWig (fold change over control) 235.8 MB
ENCFF454XIV.bed bed (conservative IDR thresholded peaks) 4.9 KB
ENCFF459HER.bigWig bigWig (fold change over control) 578.9 MB
ENCFF474FMS.bam bam (alignments) 239.3 MB
ENCFF479OSE.bigBed bigBed (conservative IDR thresholded peaks) 94.0 KB
ENCFF517DJE.bigBed bigBed (peaks and background as input for IDR) 4.8 MB
ENCFF521KKX.bigWig bigWig (signal p-value) 865.5 MB
ENCFF529NTU.bigBed bigBed (peaks and background as input for IDR) 5.0 MB
ENCFF534MXQ.bigWig bigWig (fold change over control) 200.4 MB
ENCFF537MJQ.bigBed bigBed (IDR thresholded peaks) 29.1 KB
ENCFF541AHC.bigWig bigWig (signal p-value) 919.6 MB
ENCFF554HLJ.bigWig bigWig (signal p-value) 941.3 MB
ENCFF555BUM.bigWig bigWig (fold change over control) 235.7 MB
ENCFF555EPL.bed bed (IDR ranked peaks) 759.1 KB
ENCFF563AXY.bigWig bigWig (signal p-value) 526.0 MB
ENCFF563WDZ.bed bed (optimal IDR thresholded peaks) 6.1 KB
ENCFF578JTO.bigWig bigWig (signal p-value) 888.9 MB
ENCFF634XGZ.bigWig bigWig (fold change over control) 369.3 MB
ENCFF647WVU.bam bam (alignments) 253.4 MB
ENCFF691YUR.bigWig bigWig (signal p-value) 498.0 MB
ENCFF699ITZ.bam bam (unfiltered alignments) 482.4 MB
ENCFF709QNC.bam bam (alignments) 192.3 MB
ENCFF722INI.bigWig bigWig (signal p-value) 486.6 MB
ENCFF745XJN.bed bed (IDR thresholded peaks) 1.2 KB
ENCFF761RFH.bed bed (conservative IDR thresholded peaks) 5.8 KB
ENCFF764ZHV.bed bed (peaks and background as input for IDR) 5.6 MB
ENCFF786ZKS.bed bed (IDR thresholded peaks) 914.0 B
ENCFF838MTF.bigWig bigWig (fold change over control) 200.6 MB
ENCFF863XRQ.bigBed bigBed (optimal IDR thresholded peaks) 71.9 KB
ENCFF877VRW.bed bed (peaks and background as input for IDR) 2.8 MB
ENCFF878NOC.bigBed bigBed (conservative IDR thresholded peaks) 65.9 KB
ENCFF904CWX.bigBed bigBed (peaks and background as input for IDR) 6.4 MB
ENCFF916EOG.bigBed bigBed (peaks and background as input for IDR) 12.8 MB
ENCFF920VJQ.bigBed bigBed (optimal IDR thresholded peaks) 95.4 KB
ENCFF930KRU.bigWig bigWig (signal p-value) 830.4 MB
ENCFF932WVN.bigBed bigBed (peaks and background as input for IDR) 6.4 MB
ENCFF948XVB.bigWig bigWig (fold change over control) 576.5 MB
ENCFF971VJZ.bed bed (optimal IDR thresholded peaks) 7.3 KB
ENCSR948KMB ENCSR · via encode_api

PTBP1 ChIP-seq in K562

Homo sapiens

64 data files
FileTypeSize
ENCFF031YZL.bam bam (alignments) 386.4 MB
ENCFF094CAC.bigWig bigWig (fold change over control) 283.1 MB
ENCFF094WFT.bigBed bigBed (IDR thresholded peaks) 110.1 KB
ENCFF103TYB.bed bed (IDR ranked peaks) 3.9 MB
ENCFF106XSS.bigWig bigWig (signal p-value) 401.4 MB
ENCFF109FPX.bigWig bigWig (fold change over control) 641.4 MB
ENCFF111NWI.bam bam (alignments) 415.1 MB
ENCFF127JTM.bigWig bigWig (fold change over control) 289.6 MB
ENCFF165VMB.bed bed (IDR ranked peaks) 1.6 MB
ENCFF167JUS.bed bed (peaks and background as input for IDR) 6.1 MB
ENCFF174JQR.bam bam (alignments) 390.2 MB
ENCFF193MWP.bigWig bigWig (signal p-value) 477.7 MB
ENCFF233QNF.fastq fastq (reads) 425.5 MB
ENCFF238NLS.bigBed bigBed (IDR thresholded peaks) 238.2 KB
ENCFF249ABH.bigBed bigBed (peaks and background as input for IDR) 12.3 MB
ENCFF262KWU.bam bam (unfiltered alignments) 599.4 MB
ENCFF308JUD.bam bam (unfiltered alignments) 604.0 MB
ENCFF309BVY.bam bam (unfiltered alignments) 585.5 MB
ENCFF312FSE.bigWig bigWig (signal p-value) 760.1 MB
ENCFF323HSJ.bigBed bigBed (conservative IDR thresholded peaks) 186.5 KB
ENCFF346KOV.bed bed (IDR ranked peaks) 1.4 MB
ENCFF388FQP.bigWig bigWig (signal p-value) 886.6 MB
ENCFF392GTZ.bigWig bigWig (signal p-value) 435.4 MB
ENCFF411SWC.bigWig bigWig (signal p-value) 672.9 MB
ENCFF432KAK.bed bed (peaks and background as input for IDR) 5.1 MB
ENCFF455VOE.bam bam (alignments) 386.9 MB
ENCFF463PGO.bigWig bigWig (fold change over control) 421.7 MB
ENCFF476JPM.bigWig bigWig (fold change over control) 404.5 MB
ENCFF479MVC.bed bed (peaks and background as input for IDR) 4.8 MB
ENCFF525JGC.bam bam (alignments) 389.6 MB
ENCFF529WFW.bed bed (conservative IDR thresholded peaks) 85.1 KB
ENCFF531AAU.bigWig bigWig (signal p-value) 808.0 MB
ENCFF547CND.bigBed bigBed (peaks and background as input for IDR) 12.3 MB
ENCFF553UVH.bam bam (unfiltered alignments) 598.1 MB
ENCFF580MSM.bigBed bigBed (peaks and background as input for IDR) 12.6 MB
ENCFF588TAS.bed bed (conservative IDR thresholded peaks) 75.2 KB
ENCFF594NJG.bed bed (IDR ranked peaks) 3.9 MB
ENCFF605MPT.fastq fastq (reads) 427.6 MB
ENCFF631MDU.bigBed bigBed (peaks and background as input for IDR) 12.4 MB
ENCFF647FZH.bigBed bigBed (peaks and background as input for IDR) 12.6 MB
ENCFF679POE.bam bam (unfiltered alignments) 602.8 MB
ENCFF690KOY.bed bed (IDR thresholded peaks) 28.4 KB
ENCFF694BIA.bed bed (optimal IDR thresholded peaks) 84.4 KB
ENCFF701HCA.bigBed bigBed (peaks and background as input for IDR) 12.4 MB
ENCFF740ZRB.bam bam (alignments) 411.0 MB
ENCFF761QEX.bigBed bigBed (conservative IDR thresholded peaks) 236.4 KB
ENCFF773HPT.bigBed bigBed (optimal IDR thresholded peaks) 197.5 KB
ENCFF791RQV.bigBed bigBed (IDR thresholded peaks) 99.9 KB
ENCFF793PWA.bam bam (unfiltered alignments) 589.7 MB
ENCFF814MDL.bed bed (peaks and background as input for IDR) 4.8 MB
ENCFF830KVD.bigBed bigBed (optimal IDR thresholded peaks) 199.2 KB
ENCFF833XMU.bigWig bigWig (fold change over control) 268.7 MB
ENCFF835NOD.bed bed (IDR thresholded peaks) 86.3 KB
ENCFF856RHH.bigWig bigWig (fold change over control) 271.5 MB
ENCFF881QKR.bed bed (IDR thresholded peaks) 22.6 KB
ENCFF882YQN.bed bed (peaks and background as input for IDR) 6.2 MB
ENCFF888TCK.bed bed (conservative IDR thresholded peaks) 75.3 KB
ENCFF895WYA.bigBed bigBed (conservative IDR thresholded peaks) 185.5 KB
ENCFF913LYD.bigWig bigWig (fold change over control) 648.9 MB
ENCFF917HXV.bed bed (optimal IDR thresholded peaks) 82.4 KB
ENCFF921LEX.bed bed (peaks and background as input for IDR) 5.1 MB
ENCFF940BFH.bigWig bigWig (signal p-value) 427.6 MB
ENCFF978MWQ.bigWig bigWig (signal p-value) 795.2 MB
ENCFF986RWU.bigWig bigWig (fold change over control) 673.5 MB
ENCSR128IYN ENCSR · via encode_api

SNRNP70 ChIP-seq in HepG2

Homo sapiens

64 data files
FileTypeSize
ENCFF004IJT.bed bed (IDR thresholded peaks) 2.0 KB
ENCFF033CYW.bigWig bigWig (fold change over control) 761.9 MB
ENCFF037OZF.bed bed (IDR ranked peaks) 3.2 MB
ENCFF038BZE.bigWig bigWig (fold change over control) 375.7 MB
ENCFF046IYE.bam bam (alignments) 609.9 MB
ENCFF051CIX.bigBed bigBed (optimal IDR thresholded peaks) 84.4 KB
ENCFF078YUN.bam bam (unfiltered alignments) 907.8 MB
ENCFF125VWG.bed bed (IDR ranked peaks) 3.2 MB
ENCFF128HVX.bigWig bigWig (fold change over control) 511.9 MB
ENCFF131MYK.bigWig bigWig (fold change over control) 304.2 MB
ENCFF132DPE.bigWig bigWig (signal p-value) 777.0 MB
ENCFF153VGR.bam bam (alignments) 511.9 MB
ENCFF160DUA.bigWig bigWig (fold change over control) 320.6 MB
ENCFF175ZOJ.bam bam (unfiltered alignments) 904.6 MB
ENCFF247KKW.bam bam (alignments) 502.4 MB
ENCFF253IKF.bed bed (peaks and background as input for IDR) 5.2 MB
ENCFF310GVX.bed bed (conservative IDR thresholded peaks) 5.7 KB
ENCFF311VBW.bigBed bigBed (optimal IDR thresholded peaks) 83.2 KB
ENCFF331QXX.bed bed (conservative IDR thresholded peaks) 4.6 KB
ENCFF337FIU.bed bed (optimal IDR thresholded peaks) 6.0 KB
ENCFF346UDN.bed bed (peaks and background as input for IDR) 6.6 MB
ENCFF371FIK.bed bed (conservative IDR thresholded peaks) 4.8 KB
ENCFF375TBI.bigBed bigBed (IDR thresholded peaks) 92.8 KB
ENCFF384WAU.bed bed (IDR ranked peaks) 2.6 MB
ENCFF394JLS.bigBed bigBed (peaks and background as input for IDR) 12.6 MB
ENCFF441DMR.bed bed (peaks and background as input for IDR) 6.6 MB
ENCFF441ZRO.bam bam (unfiltered alignments) 902.0 MB
ENCFF446JJH.bigBed bigBed (peaks and background as input for IDR) 12.7 MB
ENCFF447LUE.bigWig bigWig (fold change over control) 373.3 MB
ENCFF449TKN.bam bam (alignments) 623.0 MB
ENCFF455YMK.bed bed (IDR thresholded peaks) 5.9 KB
ENCFF477MTT.bigWig bigWig (signal p-value) 884.4 MB
ENCFF501CPP.bigBed bigBed (peaks and background as input for IDR) 12.6 MB
ENCFF506GHX.bigBed bigBed (IDR thresholded peaks) 80.8 KB
ENCFF562BIX.bam bam (alignments) 610.4 MB
ENCFF566HIZ.fastq fastq (reads) 898.4 MB
ENCFF568NCD.bed bed (peaks and background as input for IDR) 5.3 MB
ENCFF572YNF.bed bed (IDR thresholded peaks) 2.4 KB
ENCFF581FMD.bam bam (alignments) 502.9 MB
ENCFF613CCI.bam bam (unfiltered alignments) 1.1 GB
ENCFF619FEM.bigBed bigBed (peaks and background as input for IDR) 12.6 MB
ENCFF638JPY.bigBed bigBed (peaks and background as input for IDR) 12.7 MB
ENCFF659KLD.bigWig bigWig (fold change over control) 743.4 MB
ENCFF680KRY.bam bam (unfiltered alignments) 1.1 GB
ENCFF690RHN.bigWig bigWig (signal p-value) 411.7 MB
ENCFF701OZD.bigWig bigWig (fold change over control) 438.2 MB
ENCFF708UZC.bigBed bigBed (IDR thresholded peaks) 79.3 KB
ENCFF714RGP.bigWig bigWig (signal p-value) 722.3 MB
ENCFF730EKP.bed bed (IDR ranked peaks) 1.2 MB
ENCFF753OWY.bigWig bigWig (signal p-value) 434.6 MB
ENCFF753WNJ.bam bam (unfiltered alignments) 1.1 GB
ENCFF760BTF.bigBed bigBed (peaks and background as input for IDR) 12.6 MB
ENCFF792WDO.bigWig bigWig (fold change over control) 763.0 MB
ENCFF809ESS.fastq fastq (reads) 707.3 MB
ENCFF812IHL.bigWig bigWig (signal p-value) 451.9 MB
ENCFF847QSJ.bigBed bigBed (conservative IDR thresholded peaks) 91.8 KB
ENCFF858FBZ.bed bed (optimal IDR thresholded peaks) 5.4 KB
ENCFF859YCF.bigBed bigBed (conservative IDR thresholded peaks) 89.4 KB
ENCFF862JZI.bed bed (peaks and background as input for IDR) 4.9 MB
ENCFF871BMJ.bed bed (peaks and background as input for IDR) 5.3 MB
ENCFF883UWZ.bigBed bigBed (conservative IDR thresholded peaks) 89.3 KB
ENCFF917LVS.bigWig bigWig (signal p-value) 915.8 MB
ENCFF933IJK.bigWig bigWig (signal p-value) 429.9 MB
ENCFF946WZM.bigWig bigWig (signal p-value) 638.7 MB
ENCSR872EVQ ENCSR · via encode_api

PCBP1 ChIP-seq in HepG2

Homo sapiens

64 data files
FileTypeSize
ENCFF026UFI.bigBed bigBed (IDR thresholded peaks) 106.9 KB
ENCFF047PJE.bigWig bigWig (signal p-value) 448.1 MB
ENCFF055YWZ.bigBed bigBed (peaks and background as input for IDR) 12.4 MB
ENCFF060DPQ.bigBed bigBed (conservative IDR thresholded peaks) 429.7 KB
ENCFF062VWY.bigWig bigWig (fold change over control) 656.2 MB
ENCFF088BLN.bigBed bigBed (peaks and background as input for IDR) 12.5 MB
ENCFF110FUE.bam bam (unfiltered alignments) 759.3 MB
ENCFF117ALF.bam bam (alignments) 433.2 MB
ENCFF120PTF.bigWig bigWig (fold change over control) 266.4 MB
ENCFF138FLC.bed bed (peaks and background as input for IDR) 5.1 MB
ENCFF140WYD.bigWig bigWig (signal p-value) 764.9 MB
ENCFF146SVH.bam bam (alignments) 442.4 MB
ENCFF149NHD.bed bed (IDR ranked peaks) 2.8 MB
ENCFF180HWU.bed bed (conservative IDR thresholded peaks) 172.6 KB
ENCFF180QJE.bed bed (IDR thresholded peaks) 35.2 KB
ENCFF183DMM.bed bed (conservative IDR thresholded peaks) 174.4 KB
ENCFF192STJ.fastq fastq (reads) 583.8 MB
ENCFF193RIA.bigBed bigBed (peaks and background as input for IDR) 12.5 MB
ENCFF196NRC.bigBed bigBed (IDR thresholded peaks) 181.8 KB
ENCFF213DDG.bed bed (IDR ranked peaks) 4.7 MB
ENCFF242FNL.bam bam (alignments) 432.7 MB
ENCFF247TOB.bigBed bigBed (peaks and background as input for IDR) 12.4 MB
ENCFF276ZRS.bam bam (unfiltered alignments) 765.1 MB
ENCFF289JYW.bigWig bigWig (signal p-value) 420.2 MB
ENCFF293HYG.bigWig bigWig (fold change over control) 287.8 MB
ENCFF295TGG.bigBed bigBed (peaks and background as input for IDR) 12.5 MB
ENCFF306RGV.bed bed (peaks and background as input for IDR) 6.3 MB
ENCFF332CBV.bigWig bigWig (fold change over control) 659.1 MB
ENCFF334RXJ.bed bed (peaks and background as input for IDR) 6.2 MB
ENCFF349HMO.bam bam (alignments) 438.5 MB
ENCFF372HNF.bigBed bigBed (conservative IDR thresholded peaks) 338.2 KB
ENCFF373XZB.bed bed (IDR ranked peaks) 1.8 MB
ENCFF407HGX.fastq fastq (reads) 606.9 MB
ENCFF436WVU.bigBed bigBed (peaks and background as input for IDR) 12.5 MB
ENCFF442EYE.bigWig bigWig (fold change over control) 658.2 MB
ENCFF447SRJ.bigBed bigBed (optimal IDR thresholded peaks) 465.2 KB
ENCFF468MIF.bed bed (optimal IDR thresholded peaks) 205.8 KB
ENCFF485BHW.bigWig bigWig (signal p-value) 391.4 MB
ENCFF487WAN.bed bed (optimal IDR thresholded peaks) 208.9 KB
ENCFF496SMN.bed bed (IDR thresholded peaks) 192.6 KB
ENCFF554FLM.bed bed (IDR thresholded peaks) 70.3 KB
ENCFF570WYD.bed bed (peaks and background as input for IDR) 5.0 MB
ENCFF589WLF.bigWig bigWig (fold change over control) 267.2 MB
ENCFF599NPN.bam bam (unfiltered alignments) 791.4 MB
ENCFF604TPT.bigBed bigBed (IDR thresholded peaks) 438.3 KB
ENCFF624RFV.bam bam (unfiltered alignments) 767.6 MB
ENCFF626AMU.bigWig bigWig (signal p-value) 725.3 MB
ENCFF667BPM.bed bed (IDR ranked peaks) 4.7 MB
ENCFF667XHN.bed bed (peaks and background as input for IDR) 5.2 MB
ENCFF680PCI.bed bed (peaks and background as input for IDR) 5.3 MB
ENCFF731OTX.bigWig bigWig (signal p-value) 656.9 MB
ENCFF769WSP.bam bam (alignments) 439.1 MB
ENCFF780OJV.bam bam (alignments) 449.5 MB
ENCFF783VWW.bigWig bigWig (fold change over control) 398.5 MB
ENCFF786JWV.bigBed bigBed (conservative IDR thresholded peaks) 403.5 KB
ENCFF854PTN.bam bam (unfiltered alignments) 789.1 MB
ENCFF872IAC.bam bam (unfiltered alignments) 782.7 MB
ENCFF884TSX.bed bed (conservative IDR thresholded peaks) 187.0 KB
ENCFF893FLV.bigWig bigWig (signal p-value) 839.9 MB
ENCFF921ZFE.bigWig bigWig (fold change over control) 392.1 MB
ENCFF959OFA.bigWig bigWig (signal p-value) 756.1 MB
ENCFF963WGQ.bigBed bigBed (optimal IDR thresholded peaks) 456.1 KB
ENCFF974JOW.bigWig bigWig (fold change over control) 286.4 MB
ENCFF978KHG.bigWig bigWig (signal p-value) 462.7 MB
ENCSR548MAW ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) input control experiment of PCBP4

1 data file
FileTypeSize
ENCFF519RUA.fastq fastq (reads) 324.8 MB
ENCSR292HKC ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) input control experiment of RBM45 and RBM41

1 data file
FileTypeSize
ENCFF309HWO.fastq fastq (reads) 410.2 MB
ENCSR421UDF ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) pulldown experiment against RBFOX3

13 data files
FileTypeSize
ENCFF108IBF.tsv tsv (enrichment) 168.1 KB
ENCFF111IQQ.tsv tsv (enrichment) 41.1 KB
ENCFF150YMO.tsv tsv (library fraction) 265.3 KB
ENCFF247CQR.tsv tsv (library fraction) 1.1 MB
ENCFF405QFZ.fastq fastq (reads) 466.2 MB
ENCFF411LYJ.tsv tsv (library fraction) 64.5 KB
ENCFF518RZJ.tsv tsv (library fraction) 15.5 KB
ENCFF536WVL.tsv tsv (enrichment) 10.0 KB
ENCFF629DZC.fastq fastq (reads) 411.2 MB
ENCFF719LOX.fastq fastq (reads) 445.6 MB
ENCFF942RUM.fastq fastq (reads) 382.7 MB
ENCFF952BVQ.tsv tsv (enrichment) 688.3 KB
ENCFF963SOG.fastq fastq (reads) 339.3 MB
ENCSR696PRX ENCSR · via encode_api

eCLIP control experiment on K562 against AARS

Homo sapiens

8 data files
FileTypeSize
ENCFF082RVJ.bigWig bigWig (plus strand signal of unique reads) 36.8 MB
ENCFF159ZFD.fastq fastq (reads) 933.9 MB
ENCFF268ZWV.bigWig bigWig (minus strand signal of unique reads) 35.2 MB
ENCFF273HDK.bam bam (alignments) 877.7 MB
ENCFF430BUF.bigWig bigWig (plus strand signal of unique reads) 36.5 MB
ENCFF595YFZ.fastq fastq (reads) 904.4 MB
ENCFF703VEL.bigWig bigWig (minus strand signal of unique reads) 35.5 MB
ENCFF713BCH.bam bam (alignments) 869.9 MB
ENCSR013CTQ ENCSR · via encode_api

eCLIP experiment on K562 against EXOSC5

Homo sapiens

28 data files
FileTypeSize
ENCFF070QII.bam bam (alignments) 257.3 MB
ENCFF127WRQ.bed bed (peaks) 1.4 MB
ENCFF140TMZ.bigBed bigBed (peaks) 2.7 MB
ENCFF164EXA.bigWig bigWig (minus strand signal of unique reads) 15.9 MB
ENCFF193VEK.fastq fastq (reads) 605.5 MB
ENCFF293TAU.fastq fastq (reads) 589.0 MB
ENCFF344ZBI.bam bam (alignments) 255.1 MB
ENCFF357QDX.fastq fastq (reads) 647.7 MB
ENCFF418BNV.bigWig bigWig (plus strand signal of unique reads) 16.7 MB
ENCFF427AAU.bed bed (peaks) 237.1 KB
ENCFF517HCP.bigBed bigBed (peaks) 2.6 MB
ENCFF532CWB.bed bed (peaks) 1.4 MB
ENCFF609MDJ.fastq fastq (reads) 627.9 MB
ENCFF614IEN.bigBed bigBed (peaks) 2.6 MB
ENCFF623VXC.bigWig bigWig (minus strand signal of unique reads) 15.8 MB
ENCFF624PJV.bigWig bigWig (plus strand signal of unique reads) 16.8 MB
ENCFF710TEK.bam bam (alignments) 258.7 MB
ENCFF741JYV.bigWig bigWig (plus strand signal of unique reads) 16.5 MB
ENCFF781WWB.bed bed (peaks) 1.3 MB
ENCFF858CSS.bed bed (peaks) 238.9 KB
ENCFF876TQQ.bed bed (peaks) 514.8 KB
ENCFF887KRP.bed bed (peaks) 513.0 KB
ENCFF890CZT.bigBed bigBed (peaks) 2.7 MB
ENCFF917THD.bigWig bigWig (minus strand signal of unique reads) 15.9 MB
ENCFF918VFZ.bed bed (peaks) 1.4 MB
ENCFF923WWZ.bigWig bigWig (plus strand signal of unique reads) 17.0 MB
ENCFF925JID.bam bam (alignments) 253.8 MB
ENCFF942QUP.bigWig bigWig (minus strand signal of unique reads) 15.8 MB
ENCSR397ZZR ENCSR · via encode_api

Control ChIP-seq in K562

Homo sapiens

14 data files
FileTypeSize
ENCFF337NDC.bam bam (alignments) 1.5 GB
ENCFF457CIV.bam bam (alignments) 1.4 GB
ENCFF476OPN.bam bam (unfiltered alignments) 1.7 GB
ENCFF505JDM.bam bam (alignments) 1.4 GB
ENCFF513NDA.fastq fastq (reads) 1.2 GB
ENCFF529GUX.bam bam (alignments) 1.3 GB
ENCFF554LOM.bam bam (alignments) 1.3 GB
ENCFF574CMH.bam bam (unfiltered alignments) 1.8 GB
ENCFF648SCX.bam bam (unfiltered alignments) 1.9 GB
ENCFF732PHN.bam bam (unfiltered alignments) 1.9 GB
ENCFF744ZJK.fastq fastq (reads) 1.3 GB
ENCFF770YBL.bam bam (unfiltered alignments) 1.9 GB
ENCFF926NUN.bam bam (alignments) 1.4 GB
ENCFF965IQY.bam bam (unfiltered alignments) 1.8 GB
ENCSR084AIG ENCSR · via encode_api

Control ChIP-seq in K562

Homo sapiens

14 data files
FileTypeSize
ENCFF082ZQX.bam bam (unfiltered alignments) 1.8 GB
ENCFF087LXB.bam bam (alignments) 1.5 GB
ENCFF120YSP.bam bam (alignments) 1.4 GB
ENCFF180YEJ.bam bam (unfiltered alignments) 2.1 GB
ENCFF310YRB.bam bam (unfiltered alignments) 1.9 GB
ENCFF363JFD.fastq fastq (reads) 1.4 GB
ENCFF403MPD.bam bam (unfiltered alignments) 2.1 GB
ENCFF493QSH.bam bam (alignments) 1.4 GB
ENCFF560NTV.bam bam (unfiltered alignments) 2.1 GB
ENCFF577LLL.fastq fastq (reads) 1.3 GB
ENCFF641CEP.bam bam (alignments) 1.6 GB
ENCFF742YBS.bam bam (alignments) 1.6 GB
ENCFF814YFG.bam bam (unfiltered alignments) 1.9 GB
ENCFF906SAI.bam bam (alignments) 1.6 GB
ENCSR119AFY ENCSR · via encode_api

eCLIP control experiment on K562 against FASTKD2

Homo sapiens

8 data files
FileTypeSize
ENCFF154DNE.bigWig bigWig (plus strand signal of unique reads) 41.9 MB
ENCFF197INO.fastq fastq (reads) 1.1 GB
ENCFF297BGD.bigWig bigWig (minus strand signal of unique reads) 39.7 MB
ENCFF350APU.bigWig bigWig (plus strand signal of unique reads) 41.1 MB
ENCFF367FDD.bam bam (alignments) 975.8 MB
ENCFF507IXS.fastq fastq (reads) 1.1 GB
ENCFF882EEN.bigWig bigWig (minus strand signal of unique reads) 40.5 MB
ENCFF928RKY.bam bam (alignments) 955.8 MB
ENCSR593LSP ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) input control experiment of ELAVL4

1 data file
FileTypeSize
ENCFF418KRY.fastq fastq (reads) 661.9 MB
ENCSR195IWB ENCSR · via encode_api

eCLIP control experiment on K562 against DDX24

Homo sapiens

8 data files
FileTypeSize
ENCFF113HCY.fastq fastq (reads) 744.8 MB
ENCFF327VQR.bam bam (alignments) 635.2 MB
ENCFF407HUR.bam bam (alignments) 651.0 MB
ENCFF480NVQ.bigWig bigWig (plus strand signal of unique reads) 30.4 MB
ENCFF689NNO.bigWig bigWig (minus strand signal of unique reads) 29.5 MB
ENCFF696XDE.bigWig bigWig (minus strand signal of unique reads) 28.5 MB
ENCFF739MOT.fastq fastq (reads) 702.6 MB
ENCFF755IBA.bigWig bigWig (plus strand signal of unique reads) 29.4 MB
ENCSR171TTH ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) pulldown experiment against ELAVL4

13 data files
FileTypeSize
ENCFF144IPW.fastq fastq (reads) 373.8 MB
ENCFF177IIK.fastq fastq (reads) 471.9 MB
ENCFF183CKH.tsv tsv (enrichment) 10.0 KB
ENCFF221RQV.tsv tsv (enrichment) 688.2 KB
ENCFF495WZV.tsv tsv (enrichment) 168.1 KB
ENCFF639TKW.fastq fastq (reads) 432.0 MB
ENCFF729VNY.fastq fastq (reads) 352.1 MB
ENCFF733WCR.tsv tsv (library fraction) 265.2 KB
ENCFF736UWG.tsv tsv (library fraction) 1.1 MB
ENCFF797VXM.tsv tsv (library fraction) 64.6 KB
ENCFF803LGU.tsv tsv (library fraction) 15.5 KB
ENCFF842JHX.tsv tsv (enrichment) 41.0 KB
ENCFF947KRL.fastq fastq (reads) 551.4 MB
ENCSR620PUP ENCSR · via encode_api

Control shRNA against no target in K562 cells followed by RNA-seq. (NT_BGKLV25)

Homo sapiens

84 data files
FileTypeSize
ENCFF017CPT.bigWig bigWig (plus strand signal of unique reads) 93.6 MB
ENCFF034QOB.bigWig bigWig (minus strand signal of all reads) 161.7 MB
ENCFF042QBY.bigWig bigWig (plus strand signal of all reads) 179.6 MB
ENCFF046HWQ.tsv tsv (transcript quantifications) 24.9 MB
ENCFF052KLK.bigWig bigWig (minus strand signal of all reads) 92.4 MB
ENCFF072QOL.fastq fastq (reads) 3.5 GB
ENCFF075HNS.fastq fastq (reads) 3.5 GB
ENCFF086TWL.bigWig bigWig (minus strand signal of unique reads) 90.1 MB
ENCFF113GSP.bigWig bigWig (plus strand signal of all reads) 94.1 MB
ENCFF120OWZ.bigWig bigWig (minus strand signal of unique reads) 159.2 MB
ENCFF145AOC.bigWig bigWig (plus strand signal of unique reads) 152.5 MB
ENCFF171TGT.bam bam (alignments) 15.3 GB
ENCFF196DRD.bam bam (alignments) 5.5 GB
ENCFF199XPS.bigWig bigWig (plus strand signal of unique reads) 100.1 MB
ENCFF210TQX.bigWig bigWig (minus strand signal of unique reads) 148.5 MB
ENCFF225NUT.bigWig bigWig (minus strand signal of unique reads) 157.2 MB
ENCFF232KSW.bigWig bigWig (plus strand signal of all reads) 98.1 MB
ENCFF242MKU.bigWig bigWig (plus strand signal of unique reads) 92.0 MB
ENCFF254GCE.tsv tsv (transcript quantifications) 29.9 MB
ENCFF256JTT.bam bam (alignments) 5.4 GB
ENCFF289BJT.bigWig bigWig (minus strand signal of unique reads) 145.3 MB
ENCFF302MAR.bam bam (transcriptome alignments) 17.8 GB
ENCFF341FFK.bam bam (alignments) 12.7 GB
ENCFF345DRD.bam bam (alignments) 6.5 GB
ENCFF349DCK.bigWig bigWig (plus strand signal of all reads) 164.8 MB
ENCFF365OSJ.bam bam (alignments) 5.4 GB
ENCFF382OIL.tsv tsv (gene quantifications) 9.1 MB
ENCFF383ORT.bam bam (transcriptome alignments) 7.5 GB
ENCFF386LNA.tsv tsv (gene quantifications) 9.1 MB
ENCFF402BSL.bam bam (alignments) 15.8 GB
ENCFF420HNT.tsv tsv (transcript quantifications) 25.0 MB
ENCFF447PYP.bigWig bigWig (minus strand signal of all reads) 177.0 MB
ENCFF457XYH.bigWig bigWig (minus strand signal of unique reads) 159.1 MB
ENCFF488QZZ.bigWig bigWig (plus strand signal of unique reads) 163.0 MB
ENCFF504ZIF.tsv tsv (transcript quantifications) 25.3 MB
ENCFF505DDQ.bigWig bigWig (plus strand signal of all reads) 101.1 MB
ENCFF519ETR.bigWig bigWig (minus strand signal of all reads) 158.6 MB
ENCFF524KZE.bigWig bigWig (plus strand signal of unique reads) 99.9 MB
ENCFF535ANE.bigWig bigWig (plus strand signal of unique reads) 149.3 MB
ENCFF548VUD.fastq fastq (reads) 8.4 GB
ENCFF550DEE.bigWig bigWig (minus strand signal of unique reads) 97.9 MB
ENCFF585BAL.tsv tsv (gene quantifications) 10.4 MB
ENCFF586JCE.bigWig bigWig (plus strand signal of unique reads) 99.1 MB
ENCFF587YAW.bigWig bigWig (minus strand signal of all reads) 111.0 MB
ENCFF592ZEW.bigWig bigWig (minus strand signal of all reads) 179.2 MB
ENCFF598JAR.bam bam (transcriptome alignments) 7.5 GB
ENCFF608JAL.bigWig bigWig (plus strand signal of all reads) 112.3 MB
ENCFF608OTJ.bigWig bigWig (minus strand signal of unique reads) 145.9 MB
ENCFF608UHK.bigWig bigWig (plus strand signal of all reads) 181.6 MB
ENCFF610OQR.bam bam (transcriptome alignments) 17.7 GB
ENCFF615KJS.bam bam (alignments) 15.8 GB
ENCFF623OYA.bigWig bigWig (plus strand signal of unique reads) 90.0 MB
ENCFF624PFP.bigWig bigWig (minus strand signal of all reads) 97.0 MB
ENCFF636LTE.bigWig bigWig (minus strand signal of unique reads) 87.6 MB
ENCFF639JAQ.bigWig bigWig (minus strand signal of all reads) 179.2 MB
ENCFF643OYR.tsv tsv (gene quantifications) 10.5 MB
ENCFF665OLB.bam bam (alignments) 6.7 GB
ENCFF678GGM.bigWig bigWig (plus strand signal of unique reads) 161.4 MB
ENCFF707JXZ.tsv tsv (transcript quantifications) 27.6 MB
ENCFF732KWT.bigWig bigWig (plus strand signal of all reads) 109.7 MB
ENCFF736OLO.bigWig bigWig (minus strand signal of all reads) 99.4 MB
ENCFF774WNN.bam bam (alignments) 12.9 GB
ENCFF779PJC.bigWig bigWig (plus strand signal of all reads) 112.3 MB
ENCFF796KLJ.bam bam (transcriptome alignments) 8.5 GB
ENCFF802KDZ.tsv tsv (transcript quantifications) 27.5 MB
ENCFF818QWF.tsv tsv (transcript quantifications) 29.8 MB
ENCFF818RDZ.fastq fastq (reads) 8.3 GB
ENCFF834UXF.tsv tsv (gene quantifications) 9.5 MB
ENCFF836SOP.bigWig bigWig (minus strand signal of unique reads) 97.5 MB
ENCFF840UWV.bam bam (alignments) 12.7 GB
ENCFF841AXV.tsv tsv (gene quantifications) 9.5 MB
ENCFF885PAA.tsv tsv (transcript quantifications) 25.4 MB
ENCFF892SNN.bigWig bigWig (plus strand signal of all reads) 160.9 MB
ENCFF906SZV.bigWig bigWig (minus strand signal of all reads) 111.0 MB
ENCFF906VTC.bigWig bigWig (minus strand signal of all reads) 108.3 MB
ENCFF912JKK.bigWig bigWig (plus strand signal of unique reads) 149.4 MB
ENCFF912YHY.bigWig bigWig (plus strand signal of unique reads) 163.1 MB
ENCFF944OGL.bam bam (transcriptome alignments) 20.1 GB
ENCFF949PXM.bigWig bigWig (minus strand signal of unique reads) 96.9 MB
ENCFF960OSH.bigWig bigWig (plus strand signal of all reads) 181.7 MB
ENCFF963PVJ.bigWig bigWig (minus strand signal of unique reads) 91.3 MB
ENCFF974ICA.bigWig bigWig (minus strand signal of all reads) 157.6 MB
ENCFF977FSW.bam bam (alignments) 6.7 GB
ENCFF982YWD.bigWig bigWig (plus strand signal of all reads) 160.7 MB
ENCSR848AOP ENCSR · via encode_api

RBM22 ChIP-seq in K562

Homo sapiens

66 data files
FileTypeSize
ENCFF012ANG.fastq fastq (reads) 436.7 MB
ENCFF037VVL.bam bam (alignments) 509.7 MB
ENCFF038UZU.bed bed (conservative IDR thresholded peaks) 165.7 KB
ENCFF051SGG.bed bed (peaks and background as input for IDR) 6.2 MB
ENCFF051YGP.bigWig bigWig (signal p-value) 994.2 MB
ENCFF072GUA.bigBed bigBed (peaks and background as input for IDR) 11.7 MB
ENCFF072MHF.bed bed (peaks and background as input for IDR) 6.8 MB
ENCFF093GQO.bigWig bigWig (signal p-value) 1.1 GB
ENCFF094ATZ.bed bed (IDR ranked peaks) 7.0 MB
ENCFF103RGC.bigWig bigWig (fold change over control) 614.8 MB
ENCFF104YLW.bigBed bigBed (peaks and background as input for IDR) 11.9 MB
ENCFF113RMN.bed bed (IDR thresholded peaks) 152.4 KB
ENCFF168WKB.bam bam (alignments) 503.9 MB
ENCFF178UMK.bam bam (unfiltered alignments) 1.3 GB
ENCFF219AMK.bigBed bigBed (peaks and background as input for IDR) 12.2 MB
ENCFF231DLV.bigWig bigWig (fold change over control) 621.8 MB
ENCFF239NFE.bigWig bigWig (signal p-value) 990.4 MB
ENCFF270GDQ.bigBed bigBed (peaks and background as input for IDR) 12.1 MB
ENCFF282KTO.bigWig bigWig (fold change over control) 400.0 MB
ENCFF293FAW.bigWig bigWig (signal p-value) 562.6 MB
ENCFF301USB.bed bed (conservative IDR thresholded peaks) 163.9 KB
ENCFF302NZN.bigBed bigBed (peaks and background as input for IDR) 11.8 MB
ENCFF313PNJ.bam bam (alignments) 522.3 MB
ENCFF314NQZ.bed bed (peaks and background as input for IDR) 6.0 MB
ENCFF338KQK.bigWig bigWig (fold change over control) 949.1 MB
ENCFF338SXL.bam bam (alignments) 485.6 MB
ENCFF344KCE.bed bed (IDR ranked peaks) 5.6 MB
ENCFF361TRC.bigWig bigWig (signal p-value) 613.0 MB
ENCFF372LGG.bam bam (unfiltered alignments) 1.4 GB
ENCFF386VOI.bigWig bigWig (fold change over control) 948.5 MB
ENCFF411ILS.bigWig bigWig (fold change over control) 950.6 MB
ENCFF420IBN.bed bed (optimal IDR thresholded peaks) 225.9 KB
ENCFF420JDS.bigBed bigBed (optimal IDR thresholded peaks) 539.6 KB
ENCFF441IWC.bam bam (alignments) 504.6 MB
ENCFF441VVM.bigWig bigWig (signal p-value) 1.0 GB
ENCFF502OID.bam bam (unfiltered alignments) 1.3 GB
ENCFF522JUV.bed bed (optimal IDR thresholded peaks) 218.4 KB
ENCFF531SQW.bed bed (IDR thresholded peaks) 94.7 KB
ENCFF553XIO.bigBed bigBed (conservative IDR thresholded peaks) 425.7 KB
ENCFF574RMG.fastq fastq (reads) 922.2 MB
ENCFF586SKM.bed bed (IDR ranked peaks) 4.3 MB
ENCFF610REF.bigBed bigBed (conservative IDR thresholded peaks) 432.8 KB
ENCFF617QJI.bed bed (peaks and background as input for IDR) 6.8 MB
ENCFF629OUL.bigBed bigBed (IDR thresholded peaks) 519.4 KB
ENCFF636NXX.bigBed bigBed (IDR thresholded peaks) 391.7 KB
ENCFF640DDR.bigBed bigBed (peaks and background as input for IDR) 11.9 MB
ENCFF648TYH.bigBed bigBed (optimal IDR thresholded peaks) 524.6 KB
ENCFF649DPF.bam bam (unfiltered alignments) 1.3 GB
ENCFF654HVL.fastq fastq (reads) 900.6 MB
ENCFF673KDF.bed bed (IDR ranked peaks) 6.5 MB
ENCFF678EKM.bed bed (conservative IDR thresholded peaks) 161.8 KB
ENCFF710RJL.fastq fastq (reads) 576.5 MB
ENCFF713MEZ.bigWig bigWig (signal p-value) 989.1 MB
ENCFF717MVB.bigWig bigWig (fold change over control) 400.7 MB
ENCFF800JHC.bigWig bigWig (signal p-value) 604.8 MB
ENCFF804ZTV.bam bam (unfiltered alignments) 1.3 GB
ENCFF810GRV.bigWig bigWig (fold change over control) 423.6 MB
ENCFF823POC.bigWig bigWig (fold change over control) 424.3 MB
ENCFF949SRR.bed bed (peaks and background as input for IDR) 6.2 MB
ENCFF956NBQ.bam bam (alignments) 484.8 MB
ENCFF963VYN.bigWig bigWig (signal p-value) 533.0 MB
ENCFF972DIH.bed bed (peaks and background as input for IDR) 6.1 MB
ENCFF978OWP.bam bam (unfiltered alignments) 1.4 GB
ENCFF982EHX.bigBed bigBed (conservative IDR thresholded peaks) 429.1 KB
ENCFF987DPX.bed bed (IDR thresholded peaks) 214.7 KB
ENCFF996LFP.bigBed bigBed (IDR thresholded peaks) 246.3 KB
ENCSR415TXN ENCSR · via encode_api

NONO ChIP-seq in K562

Homo sapiens

76 data files
FileTypeSize
ENCFF028TZK.bed bed (peaks and background as input for IDR) 6.2 MB
ENCFF041UXA.bigWig bigWig (signal p-value) 801.3 MB
ENCFF042DTW.bed bed (IDR ranked peaks) 3.4 MB
ENCFF067PTN.bam bam (alignments) 395.6 MB
ENCFF072UDF.bigBed bigBed (conservative IDR thresholded peaks) 239.2 KB
ENCFF083GXT.bigBed bigBed (peaks and background as input for IDR) 12.7 MB
ENCFF084HXP.bigBed bigBed (peaks and background as input for IDR) 12.6 MB
ENCFF089WLZ.bigWig bigWig (fold change over control) 428.6 MB
ENCFF090PBB.bigWig bigWig (signal p-value) 764.0 MB
ENCFF097RQE.fastq fastq (reads) 542.0 MB
ENCFF112YOE.bigBed bigBed (conservative IDR thresholded peaks) 164.7 KB
ENCFF130TFL.bigWig bigWig (signal p-value) 634.8 MB
ENCFF134NMW.bed bed (optimal IDR thresholded peaks) 88.0 KB
ENCFF135HSY.bigBed bigBed (optimal IDR thresholded peaks) 188.2 KB
ENCFF144MBH.bigWig bigWig (signal p-value) 642.5 MB
ENCFF149NGQ.bigWig bigWig (signal p-value) 652.7 MB
ENCFF153EMA.bigWig bigWig (fold change over control) 370.5 MB
ENCFF158UHG.bed bed (IDR thresholded peaks) 52.6 KB
ENCFF177VAA.bam bam (unfiltered alignments) 711.9 MB
ENCFF180ORT.bed bed (peaks and background as input for IDR) 6.2 MB
ENCFF189WAM.bam bam (alignments) 467.5 MB
ENCFF195IUY.bed bed (IDR thresholded peaks) 83.9 KB
ENCFF203MUO.bam bam (alignments) 448.7 MB
ENCFF211TTD.bed bed (IDR thresholded peaks) 98.5 KB
ENCFF211WVT.bed bed (conservative IDR thresholded peaks) 93.4 KB
ENCFF219YST.bed bed (conservative IDR thresholded peaks) 81.7 KB
ENCFF224HYB.bed bed (peaks and background as input for IDR) 5.6 MB
ENCFF234GXW.bed bed (peaks and background as input for IDR) 5.3 MB
ENCFF256MWI.bigWig bigWig (signal p-value) 655.7 MB
ENCFF264HYE.bigBed bigBed (conservative IDR thresholded peaks) 180.4 KB
ENCFF280TCX.bed bed (conservative IDR thresholded peaks) 69.2 KB
ENCFF316NWG.bigBed bigBed (peaks and background as input for IDR) 12.7 MB
ENCFF347DQW.bed bed (optimal IDR thresholded peaks) 73.1 KB
ENCFF382KFT.bigWig bigWig (signal p-value) 812.4 MB
ENCFF421BQG.bigWig bigWig (fold change over control) 413.8 MB
ENCFF426IHW.bed bed (conservative IDR thresholded peaks) 91.4 KB
ENCFF485NVX.bam bam (unfiltered alignments) 611.2 MB
ENCFF497SWD.bed bed (peaks and background as input for IDR) 5.5 MB
ENCFF512OPQ.bigBed bigBed (peaks and background as input for IDR) 12.7 MB
ENCFF516CTY.bigBed bigBed (IDR thresholded peaks) 137.0 KB
ENCFF535GLW.bam bam (unfiltered alignments) 717.0 MB
ENCFF548DBJ.bed bed (peaks and background as input for IDR) 6.4 MB
ENCFF602CRB.bigBed bigBed (peaks and background as input for IDR) 12.6 MB
ENCFF609LOZ.bed bed (peaks and background as input for IDR) 5.3 MB
ENCFF610BRU.bed bed (IDR ranked peaks) 1.6 MB
ENCFF614DLD.bam bam (unfiltered alignments) 713.7 MB
ENCFF617MUG.bigWig bigWig (signal p-value) 609.4 MB
ENCFF618MHM.bam bam (alignments) 379.9 MB
ENCFF621AJS.bigWig bigWig (fold change over control) 416.3 MB
ENCFF671LJP.bam bam (unfiltered alignments) 609.8 MB
ENCFF673PEO.bigWig bigWig (signal p-value) 724.6 MB
ENCFF729PYU.bed bed (peaks and background as input for IDR) 5.1 MB
ENCFF735YJL.bigWig bigWig (signal p-value) 715.3 MB
ENCFF738TZB.bigBed bigBed (peaks and background as input for IDR) 12.6 MB
ENCFF753KMF.bigWig bigWig (fold change over control) 646.1 MB
ENCFF758RLK.bigWig bigWig (fold change over control) 644.8 MB
ENCFF774PGE.bigBed bigBed (IDR thresholded peaks) 217.6 KB
ENCFF779HML.bigBed bigBed (peaks and background as input for IDR) 12.6 MB
ENCFF782TAA.bigBed bigBed (IDR thresholded peaks) 247.6 KB
ENCFF823CQK.bed bed (optimal IDR thresholded peaks) 94.2 KB
ENCFF844QDS.bed bed (IDR ranked peaks) 3.4 MB
ENCFF844WQC.bigBed bigBed (optimal IDR thresholded peaks) 241.9 KB
ENCFF849BSO.bigWig bigWig (fold change over control) 635.1 MB
ENCFF863RCB.bigBed bigBed (peaks and background as input for IDR) 12.6 MB
ENCFF882WGE.bed bed (peaks and background as input for IDR) 5.4 MB
ENCFF901NLW.bigBed bigBed (conservative IDR thresholded peaks) 237.6 KB
ENCFF905TUF.bigWig bigWig (fold change over control) 371.5 MB
ENCFF913GCP.bam bam (alignments) 380.3 MB
ENCFF924FSA.fastq fastq (reads) 466.5 MB
ENCFF935YCY.bigWig bigWig (fold change over control) 355.0 MB
ENCFF942QPP.bigBed bigBed (optimal IDR thresholded peaks) 169.5 KB
ENCFF976IUW.bigWig bigWig (fold change over control) 635.0 MB
ENCFF984PYA.bam bam (alignments) 449.1 MB
ENCFF987OCS.bed bed (IDR ranked peaks) 1.3 MB
ENCFF988YDP.bigBed bigBed (peaks and background as input for IDR) 12.6 MB
ENCFF998EHO.bam bam (unfiltered alignments) 613.9 MB
ENCSR952UOL ENCSR · via encode_api

eCLIP control experiment on K562 against LSM11

Homo sapiens

8 data files
FileTypeSize
ENCFF037JOL.bam bam (alignments) 464.5 MB
ENCFF122YZY.fastq fastq (reads) 577.3 MB
ENCFF308SPS.fastq fastq (reads) 498.6 MB
ENCFF311ARO.bigWig bigWig (plus strand signal of unique reads) 22.0 MB
ENCFF587LFL.bigWig bigWig (minus strand signal of unique reads) 20.8 MB
ENCFF711QBZ.bigWig bigWig (minus strand signal of unique reads) 21.2 MB
ENCFF816DYE.bam bam (alignments) 456.5 MB
ENCFF819ZIQ.bigWig bigWig (plus strand signal of unique reads) 21.5 MB
ENCSR687GJH ENCSR · via encode_api

eCLIP control experiment on K562 against TROVE2

Homo sapiens

8 data files
FileTypeSize
ENCFF003UEN.bigWig bigWig (plus strand signal of unique reads) 32.1 MB
ENCFF015EIO.fastq fastq (reads) 675.1 MB
ENCFF228JKT.fastq fastq (reads) 745.3 MB
ENCFF332OGT.bigWig bigWig (plus strand signal of unique reads) 31.5 MB
ENCFF421ZLE.bigWig bigWig (minus strand signal of unique reads) 30.4 MB
ENCFF497KTD.bam bam (alignments) 682.9 MB
ENCFF509QCQ.bigWig bigWig (minus strand signal of unique reads) 31.0 MB
ENCFF536YVM.bam bam (alignments) 669.4 MB
ENCSR494JFR ENCSR · via encode_api

eCLIP control experiment on K562 against RPS3

Homo sapiens

8 data files
FileTypeSize
ENCFF175VIN.bigWig bigWig (minus strand signal of unique reads) 29.2 MB
ENCFF672BYS.fastq fastq (reads) 954.7 MB
ENCFF676RIE.bigWig bigWig (plus strand signal of unique reads) 30.2 MB
ENCFF700HKI.bam bam (alignments) 574.8 MB
ENCFF744CGY.fastq fastq (reads) 1.0 GB
ENCFF745ZUQ.bigWig bigWig (plus strand signal of unique reads) 29.7 MB
ENCFF892BBY.bigWig bigWig (minus strand signal of unique reads) 28.8 MB
ENCFF987HHN.bam bam (alignments) 581.6 MB
ENCSR479XOI ENCSR · via encode_api

eCLIP control experiment on HepG2 against NKRF

Homo sapiens

8 data files
FileTypeSize
ENCFF053RMP.bigWig bigWig (plus strand signal of unique reads) 28.1 MB
ENCFF085NXC.bam bam (alignments) 567.5 MB
ENCFF224SVT.bigWig bigWig (minus strand signal of unique reads) 27.1 MB
ENCFF273RFL.bam bam (alignments) 580.1 MB
ENCFF374APS.fastq fastq (reads) 729.9 MB
ENCFF489BZK.bigWig bigWig (plus strand signal of unique reads) 27.2 MB
ENCFF837GYT.fastq fastq (reads) 676.7 MB
ENCFF840LKD.bigWig bigWig (minus strand signal of unique reads) 26.3 MB
ENCSR317PWQ ENCSR · via encode_api

eCLIP control experiment on HepG2 against RBM15

Homo sapiens

8 data files
FileTypeSize
ENCFF038DLJ.bigWig bigWig (minus strand signal of unique reads) 17.7 MB
ENCFF314IKA.fastq fastq (reads) 469.5 MB
ENCFF559GCX.bigWig bigWig (plus strand signal of unique reads) 18.3 MB
ENCFF807WFL.bam bam (alignments) 374.1 MB
ENCFF809OPL.bam bam (alignments) 367.2 MB
ENCFF836BAF.bigWig bigWig (plus strand signal of unique reads) 18.6 MB
ENCFF882PYI.fastq fastq (reads) 444.4 MB
ENCFF982GAJ.bigWig bigWig (minus strand signal of unique reads) 18.1 MB
ENCSR814UCX ENCSR · via encode_api

Control ChIP-seq in K562

Homo sapiens

14 data files
FileTypeSize
ENCFF021SBT.bam bam (alignments) 1.2 GB
ENCFF087SCF.fastq fastq (reads) 1.0 GB
ENCFF101ILI.bam bam (alignments) 1.2 GB
ENCFF194KGT.bam bam (unfiltered alignments) 1.5 GB
ENCFF221JFQ.bam bam (alignments) 1.1 GB
ENCFF274SSL.bam bam (unfiltered alignments) 1.5 GB
ENCFF282EIV.bam bam (unfiltered alignments) 1.7 GB
ENCFF330GUW.bam bam (unfiltered alignments) 1.5 GB
ENCFF375ZQH.bam bam (alignments) 1.1 GB
ENCFF439OMO.fastq fastq (reads) 1.1 GB
ENCFF468FMG.bam bam (alignments) 1.3 GB
ENCFF536WYM.bam bam (unfiltered alignments) 1.6 GB
ENCFF619ADI.bam bam (unfiltered alignments) 1.6 GB
ENCFF819KWY.bam bam (alignments) 1.2 GB
ENCSR932KYH ENCSR · via encode_api

Control ChIP-seq in K562

Homo sapiens

14 data files
FileTypeSize
ENCFF087TOW.bam bam (unfiltered alignments) 1.4 GB
ENCFF092DDZ.fastq fastq (reads) 993.7 MB
ENCFF100PTE.bam bam (alignments) 1.1 GB
ENCFF401KXT.bam bam (alignments) 1.1 GB
ENCFF508DBG.bam bam (alignments) 1.3 GB
ENCFF510UAH.fastq fastq (reads) 1.2 GB
ENCFF522MAY.bam bam (unfiltered alignments) 1.7 GB
ENCFF572OMD.bam bam (alignments) 1.1 GB
ENCFF630ETM.bam bam (unfiltered alignments) 1.4 GB
ENCFF640UNU.bam bam (unfiltered alignments) 1.7 GB
ENCFF711MDL.bam bam (unfiltered alignments) 1.4 GB
ENCFF721LZU.bam bam (alignments) 1.3 GB
ENCFF901PZK.bam bam (unfiltered alignments) 1.7 GB
ENCFF956EMH.bam bam (alignments) 1.3 GB
ENCSR599NNK ENCSR · via encode_api

RNA-seq on HepG2 cells treated with a CRISPR gRNA against HNRNPF. (HNRNPF_BGHcLV03)

Homo sapiens

92 data files
FileTypeSize
ENCFF011CDP.bigWig bigWig (minus strand signal of unique reads) 69.4 MB
ENCFF012RMG.bam bam (transcriptome alignments) 5.7 GB
ENCFF025DAQ.tsv tsv (gene quantifications) 9.1 MB
ENCFF025HUK.bam bam (transcriptome alignments) 5.2 GB
ENCFF034UFT.bigWig bigWig (plus strand signal of unique reads) 64.7 MB
ENCFF041EMP.tsv tsv (transcript quantifications) 24.9 MB
ENCFF055GCJ.bigWig bigWig (plus strand signal of all reads) 78.9 MB
ENCFF089UTY.tsv tsv (differential expression quantifications) 2.8 MB
ENCFF096QWO.tsv tsv (gene quantifications) 9.4 MB
ENCFF103CFN.bigWig bigWig (plus strand signal of all reads) 71.1 MB
ENCFF109XNH.bigWig bigWig (plus strand signal of all reads) 72.5 MB
ENCFF112EGB.bam bam (transcriptome alignments) 5.0 GB
ENCFF114UNH.bigWig bigWig (minus strand signal of unique reads) 63.1 MB
ENCFF117CTK.bigWig bigWig (plus strand signal of all reads) 78.9 MB
ENCFF122FET.bigWig bigWig (minus strand signal of all reads) 77.6 MB
ENCFF123HCV.bigWig bigWig (minus strand signal of unique reads) 68.7 MB
ENCFF133TVD.bigWig bigWig (plus strand signal of unique reads) 73.5 MB
ENCFF136CTJ.bigWig bigWig (plus strand signal of all reads) 68.7 MB
ENCFF142LRZ.bigWig bigWig (plus strand signal of all reads) 81.1 MB
ENCFF144GPO.bam bam (alignments) 3.8 GB
ENCFF171NPC.tsv tsv (differential expression quantifications) 2.0 MB
ENCFF177NUQ.tsv tsv (gene quantifications) 9.1 MB
ENCFF185UQH.tsv tsv (transcript quantifications) 25.3 MB
ENCFF198GDM.bigWig bigWig (plus strand signal of unique reads) 73.9 MB
ENCFF220JWX.tsv tsv (differential expression quantifications) 5.7 MB
ENCFF222OCP.bam bam (alignments) 3.8 GB
ENCFF254VWU.bigWig bigWig (minus strand signal of all reads) 80.0 MB
ENCFF265VVU.bigWig bigWig (minus strand signal of all reads) 77.6 MB
ENCFF269FXL.bam bam (alignments) 3.1 GB
ENCFF271GTO.tsv tsv (gene quantifications) 10.4 MB
ENCFF296AUB.bam bam (alignments) 3.7 GB
ENCFF307NNY.bam bam (alignments) 3.1 GB
ENCFF314BMD.bigWig bigWig (minus strand signal of all reads) 67.4 MB
ENCFF349NQD.bam bam (alignments) 3.2 GB
ENCFF355XOP.tsv tsv (transcript quantifications) 27.4 MB
ENCFF364ZYQ.bigWig bigWig (minus strand signal of unique reads) 65.4 MB
ENCFF376QCQ.bigWig bigWig (plus strand signal of unique reads) 73.4 MB
ENCFF388OGB.tsv tsv (differential expression quantifications) 4.4 MB
ENCFF414FHQ.bigWig bigWig (minus strand signal of unique reads) 68.9 MB
ENCFF448SBN.tsv tsv (transcript quantifications) 27.4 MB
ENCFF456EMG.bigWig bigWig (plus strand signal of unique reads) 67.5 MB
ENCFF457ZUJ.bigWig bigWig (minus strand signal of unique reads) 71.7 MB
ENCFF469NSO.bigWig bigWig (plus strand signal of all reads) 71.8 MB
ENCFF478MSF.bigWig bigWig (minus strand signal of all reads) 69.9 MB
ENCFF478VDZ.bigWig bigWig (minus strand signal of unique reads) 72.2 MB
ENCFF484HKK.bigWig bigWig (minus strand signal of all reads) 80.0 MB
ENCFF510WUR.fastq fastq (reads) 2.2 GB
ENCFF513MIT.bigWig bigWig (minus strand signal of unique reads) 67.5 MB
ENCFF514XZX.tar tar (differential splicing quantifications) 16.2 MB
ENCFF517VZA.bigWig bigWig (minus strand signal of all reads) 70.5 MB
ENCFF532QMB.bigWig bigWig (plus strand signal of unique reads) 71.1 MB
ENCFF564EOW.bigWig bigWig (minus strand signal of unique reads) 65.9 MB
ENCFF592GFF.bam bam (alignments) 3.8 GB
ENCFF609NQV.bam bam (transcriptome alignments) 5.2 GB
ENCFF612ENV.bigWig bigWig (minus strand signal of all reads) 72.3 MB
ENCFF632HNE.bigWig bigWig (plus strand signal of all reads) 81.1 MB
ENCFF635HMN.tar tar (differential splicing quantifications) 3.5 MB
ENCFF636IVY.bigWig bigWig (minus strand signal of unique reads) 71.7 MB
ENCFF650PZT.bigWig bigWig (minus strand signal of all reads) 79.8 MB
ENCFF663TIF.bigWig bigWig (minus strand signal of unique reads) 65.7 MB
ENCFF666SYC.bigWig bigWig (minus strand signal of all reads) 73.6 MB
ENCFF667GES.tsv tsv (transcript quantifications) 29.8 MB
ENCFF667HEQ.bigWig bigWig (plus strand signal of unique reads) 70.4 MB
ENCFF703COM.bigWig bigWig (minus strand signal of all reads) 76.1 MB
ENCFF705TWX.bigWig bigWig (minus strand signal of all reads) 71.1 MB
ENCFF719XON.tsv tsv (gene quantifications) 10.4 MB
ENCFF733CXA.bam bam (transcriptome alignments) 5.0 GB
ENCFF734EJK.bigWig bigWig (plus strand signal of all reads) 81.3 MB
ENCFF740VYL.bigWig bigWig (plus strand signal of unique reads) 67.0 MB
ENCFF752GNB.fastq fastq (reads) 2.2 GB
ENCFF753LBW.bigWig bigWig (plus strand signal of unique reads) 71.0 MB
ENCFF765BZS.bam bam (alignments) 4.0 GB
ENCFF777PXN.tsv tsv (transcript quantifications) 29.8 MB
ENCFF806AAP.bigWig bigWig (plus strand signal of all reads) 73.5 MB
ENCFF806XRI.tar tar (differential splicing quantifications) 4.6 MB
ENCFF818MFO.bam bam (transcriptome alignments) 6.0 GB
ENCFF822ANR.bam bam (alignments) 4.0 GB
ENCFF828OZT.fastq fastq (reads) 2.1 GB
ENCFF832WAH.bigWig bigWig (plus strand signal of unique reads) 69.1 MB
ENCFF841PYJ.bigWig bigWig (plus strand signal of unique reads) 70.7 MB
ENCFF847WGX.bigWig bigWig (plus strand signal of all reads) 77.2 MB
ENCFF855QKM.tsv tsv (gene quantifications) 9.5 MB
ENCFF876TOA.bam bam (alignments) 3.0 GB
ENCFF893OPD.bigWig bigWig (plus strand signal of all reads) 74.9 MB
ENCFF912COC.fastq fastq (reads) 2.2 GB
ENCFF934OKK.bigWig bigWig (minus strand signal of unique reads) 69.3 MB
ENCFF944BBN.bam bam (alignments) 3.1 GB
ENCFF974DFD.tsv tsv (transcript quantifications) 25.3 MB
ENCFF981MMJ.bam bam (alignments) 3.0 GB
ENCFF983NRT.tsv tsv (transcript quantifications) 24.9 MB
ENCFF987FPJ.bigWig bigWig (plus strand signal of unique reads) 67.5 MB
ENCFF995JQT.tsv tsv (differential expression quantifications) 1.8 MB
ENCSR163JUC ENCSR · via encode_api

Control CRISPR gRNA against no target in K562 cells followed by RNA-seq. (NT_BGKcLV02)

Homo sapiens

84 data files
FileTypeSize
ENCFF013DEO.bigWig bigWig (minus strand signal of unique reads) 66.7 MB
ENCFF019RZI.tsv tsv (transcript quantifications) 25.3 MB
ENCFF044TDH.bigWig bigWig (minus strand signal of unique reads) 88.1 MB
ENCFF069KTP.bigWig bigWig (minus strand signal of all reads) 80.8 MB
ENCFF076EAI.fastq fastq (reads) 2.8 GB
ENCFF102IRO.bigWig bigWig (plus strand signal of unique reads) 72.2 MB
ENCFF102NCM.fastq fastq (reads) 1.7 GB
ENCFF107KNL.bigWig bigWig (plus strand signal of all reads) 81.7 MB
ENCFF128JTX.bam bam (alignments) 3.1 GB
ENCFF157TKC.bam bam (alignments) 4.0 GB
ENCFF188FXM.bigWig bigWig (plus strand signal of unique reads) 71.3 MB
ENCFF191YYI.bigWig bigWig (minus strand signal of all reads) 80.8 MB
ENCFF210EAL.bam bam (alignments) 2.5 GB
ENCFF215YGT.bigWig bigWig (plus strand signal of all reads) 95.0 MB
ENCFF217JIU.bigWig bigWig (plus strand signal of unique reads) 68.7 MB
ENCFF251LTH.bam bam (transcriptome alignments) 6.1 GB
ENCFF279NZO.tsv tsv (transcript quantifications) 29.8 MB
ENCFF287HKL.bigWig bigWig (plus strand signal of all reads) 81.7 MB
ENCFF323LIV.bigWig bigWig (minus strand signal of unique reads) 70.7 MB
ENCFF329NBV.bigWig bigWig (plus strand signal of unique reads) 91.9 MB
ENCFF330MAL.bigWig bigWig (minus strand signal of all reads) 105.3 MB
ENCFF331RHD.bigWig bigWig (minus strand signal of unique reads) 69.7 MB
ENCFF344HFP.bam bam (alignments) 2.4 GB
ENCFF353BVA.bam bam (alignments) 4.0 GB
ENCFF363BBI.tsv tsv (transcript quantifications) 29.8 MB
ENCFF375RRP.bigWig bigWig (minus strand signal of all reads) 79.6 MB
ENCFF389DGA.bigWig bigWig (plus strand signal of unique reads) 64.8 MB
ENCFF403ARF.bigWig bigWig (plus strand signal of all reads) 99.3 MB
ENCFF404IOE.tsv tsv (gene quantifications) 9.5 MB
ENCFF406BOE.bigWig bigWig (minus strand signal of all reads) 106.9 MB
ENCFF408NXR.bigWig bigWig (plus strand signal of unique reads) 71.3 MB
ENCFF412XQF.tsv tsv (gene quantifications) 9.1 MB
ENCFF413XMH.bigWig bigWig (plus strand signal of unique reads) 96.6 MB
ENCFF432GQI.bigWig bigWig (minus strand signal of unique reads) 69.8 MB
ENCFF450CCQ.bam bam (transcriptome alignments) 7.0 GB
ENCFF461VYM.bigWig bigWig (plus strand signal of unique reads) 87.3 MB
ENCFF478ILB.fastq fastq (reads) 2.8 GB
ENCFF512XDI.bigWig bigWig (minus strand signal of all reads) 71.6 MB
ENCFF530OTT.bigWig bigWig (plus strand signal of all reads) 70.8 MB
ENCFF537XJX.bigWig bigWig (minus strand signal of unique reads) 93.8 MB
ENCFF545NPJ.tsv tsv (gene quantifications) 9.4 MB
ENCFF551XED.tsv tsv (gene quantifications) 10.4 MB
ENCFF564TZO.tsv tsv (gene quantifications) 9.1 MB
ENCFF570JQY.bam bam (alignments) 3.1 GB
ENCFF596NUK.tsv tsv (transcript quantifications) 24.9 MB
ENCFF610SYT.bigWig bigWig (minus strand signal of all reads) 97.8 MB
ENCFF636JFY.bam bam (transcriptome alignments) 6.2 GB
ENCFF645AQO.bigWig bigWig (minus strand signal of unique reads) 67.1 MB
ENCFF646UKA.bam bam (alignments) 5.1 GB
ENCFF650JUO.bam bam (alignments) 4.1 GB
ENCFF661HVE.bigWig bigWig (plus strand signal of all reads) 80.5 MB
ENCFF680PQJ.bigWig bigWig (plus strand signal of unique reads) 95.6 MB
ENCFF694ZVR.tsv tsv (transcript quantifications) 27.4 MB
ENCFF701IPK.bigWig bigWig (minus strand signal of unique reads) 89.8 MB
ENCFF706DNJ.bigWig bigWig (minus strand signal of all reads) 107.1 MB
ENCFF717XLJ.bigWig bigWig (minus strand signal of unique reads) 85.0 MB
ENCFF732KRD.bam bam (transcriptome alignments) 3.8 GB
ENCFF739JDP.bam bam (alignments) 2.4 GB
ENCFF800QQX.bigWig bigWig (minus strand signal of unique reads) 93.7 MB
ENCFF802MOU.bigWig bigWig (minus strand signal of all reads) 69.7 MB
ENCFF803KGQ.bigWig bigWig (minus strand signal of unique reads) 94.7 MB
ENCFF817XLB.bigWig bigWig (plus strand signal of all reads) 73.4 MB
ENCFF818LYU.bigWig bigWig (plus strand signal of unique reads) 89.8 MB
ENCFF834DBG.tsv tsv (transcript quantifications) 27.3 MB
ENCFF839YRC.bigWig bigWig (minus strand signal of unique reads) 63.2 MB
ENCFF840YVH.tsv tsv (gene quantifications) 10.4 MB
ENCFF842ZDM.bam bam (alignments) 3.0 GB
ENCFF843NRV.bigWig bigWig (minus strand signal of all reads) 93.5 MB
ENCFF858JPX.bam bam (transcriptome alignments) 3.8 GB
ENCFF862UXH.bigWig bigWig (minus strand signal of all reads) 72.3 MB
ENCFF864NOQ.bigWig bigWig (plus strand signal of all reads) 106.3 MB
ENCFF868GOY.bigWig bigWig (plus strand signal of all reads) 108.1 MB
ENCFF870QZI.bam bam (transcriptome alignments) 4.3 GB
ENCFF875FRI.fastq fastq (reads) 1.7 GB
ENCFF899IXW.bigWig bigWig (plus strand signal of all reads) 107.8 MB
ENCFF913GDG.tsv tsv (transcript quantifications) 24.9 MB
ENCFF922KDQ.tsv tsv (transcript quantifications) 25.3 MB
ENCFF925GZR.bam bam (alignments) 4.9 GB
ENCFF943KZJ.bigWig bigWig (plus strand signal of unique reads) 95.9 MB
ENCFF952XZY.bigWig bigWig (plus strand signal of all reads) 96.7 MB
ENCFF956XDG.bigWig bigWig (minus strand signal of all reads) 95.7 MB
ENCFF960ISU.bigWig bigWig (plus strand signal of all reads) 72.4 MB
ENCFF967DGI.bam bam (alignments) 5.1 GB
ENCFF973QRZ.bigWig bigWig (plus strand signal of unique reads) 68.1 MB
ENCSR854JES ENCSR · via encode_api

POLR2G ChIP-seq on HepG2

Homo sapiens

64 data files
FileTypeSize
ENCFF043GRK.bed bed (IDR thresholded peaks) 657.2 KB
ENCFF054JOQ.bigWig bigWig (fold change over control) 328.4 MB
ENCFF090PWQ.bam bam (alignments) 525.1 MB
ENCFF121KGM.bigWig bigWig (signal p-value) 763.3 MB
ENCFF144AJV.bed bed (IDR ranked peaks) 9.9 MB
ENCFF148GAF.bigWig bigWig (fold change over control) 311.6 MB
ENCFF159WSY.bigWig bigWig (signal p-value) 699.5 MB
ENCFF181QCC.bed bed (peaks and background as input for IDR) 6.6 MB
ENCFF193HJC.bigWig bigWig (fold change over control) 299.7 MB
ENCFF217BFK.bed bed (conservative IDR thresholded peaks) 769.3 KB
ENCFF236KRZ.bigWig bigWig (signal p-value) 654.5 MB
ENCFF241AEG.bigBed bigBed (optimal IDR thresholded peaks) 1.6 MB
ENCFF242XTM.bed bed (peaks and background as input for IDR) 6.6 MB
ENCFF259XQC.bed bed (optimal IDR thresholded peaks) 782.1 KB
ENCFF266CLR.bigBed bigBed (conservative IDR thresholded peaks) 1.6 MB
ENCFF273BUG.bigBed bigBed (peaks and background as input for IDR) 11.1 MB
ENCFF275TIK.bam bam (alignments) 496.1 MB
ENCFF283LGA.bam bam (unfiltered alignments) 802.3 MB
ENCFF292YCO.bam bam (unfiltered alignments) 818.6 MB
ENCFF316BHA.bed bed (peaks and background as input for IDR) 6.8 MB
ENCFF323XZG.bed bed (IDR ranked peaks) 9.3 MB
ENCFF328GBF.bam bam (alignments) 496.6 MB
ENCFF348BZV.bam bam (unfiltered alignments) 1006.5 MB
ENCFF360QQU.bigWig bigWig (fold change over control) 493.7 MB
ENCFF420YOK.bigWig bigWig (fold change over control) 494.4 MB
ENCFF453OKN.bam bam (alignments) 595.9 MB
ENCFF485SII.bed bed (IDR thresholded peaks) 775.3 KB
ENCFF496CJE.bed bed (conservative IDR thresholded peaks) 764.1 KB
ENCFF508UTS.bigBed bigBed (IDR thresholded peaks) 1.6 MB
ENCFF520SUX.bam bam (unfiltered alignments) 817.8 MB
ENCFF536BRY.bigBed bigBed (IDR thresholded peaks) 1.5 MB
ENCFF551IJP.bed bed (optimal IDR thresholded peaks) 787.5 KB
ENCFF559FAT.bed bed (peaks and background as input for IDR) 6.7 MB
ENCFF565FWV.bigWig bigWig (signal p-value) 732.8 MB
ENCFF567XFA.bigWig bigWig (signal p-value) 678.7 MB
ENCFF574ZKW.bam bam (alignments) 563.0 MB
ENCFF585ZWK.bigWig bigWig (signal p-value) 705.5 MB
ENCFF589AEQ.bigWig bigWig (fold change over control) 316.4 MB
ENCFF617WDA.bigBed bigBed (conservative IDR thresholded peaks) 1.6 MB
ENCFF646ACT.bed bed (IDR thresholded peaks) 565.1 KB
ENCFF680VQA.bigBed bigBed (optimal IDR thresholded peaks) 1.6 MB
ENCFF682STT.bigWig bigWig (fold change over control) 515.2 MB
ENCFF685FCZ.bigWig bigWig (signal p-value) 656.7 MB
ENCFF697MJD.bigWig bigWig (signal p-value) 829.5 MB
ENCFF733YFT.bed bed (conservative IDR thresholded peaks) 767.8 KB
ENCFF737QPD.bigBed bigBed (peaks and background as input for IDR) 10.8 MB
ENCFF738NEB.bigWig bigWig (fold change over control) 316.5 MB
ENCFF743OGX.bigBed bigBed (IDR thresholded peaks) 1.1 MB
ENCFF754JXF.bigBed bigBed (peaks and background as input for IDR) 10.8 MB
ENCFF758QFH.bed bed (peaks and background as input for IDR) 6.7 MB
ENCFF835IAQ.bed bed (IDR ranked peaks) 10.1 MB
ENCFF836RTH.bigBed bigBed (conservative IDR thresholded peaks) 1.6 MB
ENCFF853WQF.bigBed bigBed (peaks and background as input for IDR) 11.1 MB
ENCFF856TZN.bigWig bigWig (signal p-value) 790.9 MB
ENCFF866RDH.bigWig bigWig (fold change over control) 300.5 MB
ENCFF905HJA.bed bed (peaks and background as input for IDR) 6.8 MB
ENCFF914QRR.bigBed bigBed (peaks and background as input for IDR) 10.6 MB
ENCFF937LJU.bam bam (unfiltered alignments) 1007.4 MB
ENCFF940NHX.bam bam (alignments) 563.6 MB
ENCFF945MZH.bed bed (IDR ranked peaks) 10.1 MB
ENCFF973HFC.bigBed bigBed (peaks and background as input for IDR) 10.6 MB
ENCFF987TDP.fastq fastq (reads) 635.1 MB
ENCFF988VYU.fastq fastq (reads) 794.3 MB
ENCFF991IWU.bam bam (unfiltered alignments) 984.6 MB
ENCSR104ABF ENCSR · via encode_api

Control shRNA against no target in HepG2 cells followed by RNA-seq. (non-target_BGHLV26)

Homo sapiens

84 data files
FileTypeSize
ENCFF037LQC.bigWig bigWig (minus strand signal of all reads) 60.8 MB
ENCFF048PIC.tsv tsv (transcript quantifications) 29.9 MB
ENCFF057APN.bigWig bigWig (minus strand signal of unique reads) 56.1 MB
ENCFF071CPW.tsv tsv (transcript quantifications) 29.9 MB
ENCFF087PZH.bam bam (transcriptome alignments) 5.1 GB
ENCFF105YHI.fastq fastq (reads) 2.3 GB
ENCFF124WWP.tsv tsv (gene quantifications) 9.5 MB
ENCFF133AWD.bigWig bigWig (minus strand signal of unique reads) 50.0 MB
ENCFF137CTJ.bigWig bigWig (plus strand signal of unique reads) 55.4 MB
ENCFF174NAV.bam bam (alignments) 2.9 GB
ENCFF186IRV.bigWig bigWig (plus strand signal of unique reads) 53.7 MB
ENCFF234ASA.bigWig bigWig (minus strand signal of unique reads) 56.0 MB
ENCFF241AMS.bigWig bigWig (plus strand signal of all reads) 61.7 MB
ENCFF243VIW.bigWig bigWig (minus strand signal of all reads) 52.5 MB
ENCFF255ZLX.bigWig bigWig (plus strand signal of unique reads) 57.4 MB
ENCFF260RHZ.bigWig bigWig (plus strand signal of unique reads) 57.5 MB
ENCFF260SRT.bigWig bigWig (minus strand signal of all reads) 62.8 MB
ENCFF275TGG.bigWig bigWig (plus strand signal of unique reads) 57.3 MB
ENCFF276DHN.bigWig bigWig (plus strand signal of all reads) 55.9 MB
ENCFF291QQH.fastq fastq (reads) 2.1 GB
ENCFF299KGQ.tsv tsv (transcript quantifications) 25.4 MB
ENCFF304BYI.bigWig bigWig (plus strand signal of all reads) 61.7 MB
ENCFF306PWN.bigWig bigWig (plus strand signal of unique reads) 51.3 MB
ENCFF312WHH.bigWig bigWig (plus strand signal of all reads) 63.1 MB
ENCFF318NYA.bigWig bigWig (minus strand signal of unique reads) 54.2 MB
ENCFF366GIG.bigWig bigWig (plus strand signal of all reads) 63.9 MB
ENCFF382ICK.bigWig bigWig (minus strand signal of unique reads) 54.1 MB
ENCFF390PMO.bigWig bigWig (minus strand signal of all reads) 54.3 MB
ENCFF392UKG.bigWig bigWig (plus strand signal of all reads) 53.6 MB
ENCFF401ECA.tsv tsv (gene quantifications) 9.1 MB
ENCFF430GWF.bam bam (alignments) 3.7 GB
ENCFF432EGH.bigWig bigWig (plus strand signal of all reads) 64.0 MB
ENCFF445UHM.bigWig bigWig (plus strand signal of unique reads) 51.8 MB
ENCFF472RXH.bigWig bigWig (minus strand signal of unique reads) 55.9 MB
ENCFF476JYI.bigWig bigWig (minus strand signal of all reads) 56.0 MB
ENCFF482MPL.bam bam (alignments) 3.8 GB
ENCFF503VRZ.fastq fastq (reads) 2.3 GB
ENCFF511CWI.bigWig bigWig (plus strand signal of all reads) 55.2 MB
ENCFF512PRB.tsv tsv (transcript quantifications) 25.0 MB
ENCFF516EBE.tsv tsv (gene quantifications) 9.5 MB
ENCFF522FQQ.bigWig bigWig (plus strand signal of all reads) 58.1 MB
ENCFF541UWV.tsv tsv (transcript quantifications) 27.2 MB
ENCFF565UXS.bam bam (transcriptome alignments) 5.8 GB
ENCFF572OAQ.bigWig bigWig (plus strand signal of unique reads) 56.1 MB
ENCFF575GAA.bigWig bigWig (minus strand signal of all reads) 54.8 MB
ENCFF602GIQ.fastq fastq (reads) 2.1 GB
ENCFF611LPK.bigWig bigWig (minus strand signal of all reads) 54.2 MB
ENCFF624BTI.bigWig bigWig (minus strand signal of all reads) 60.6 MB
ENCFF634HKB.bam bam (alignments) 3.8 GB
ENCFF651QPE.tsv tsv (gene quantifications) 10.4 MB
ENCFF653XRX.tsv tsv (gene quantifications) 9.1 MB
ENCFF662ZBG.bam bam (transcriptome alignments) 5.0 GB
ENCFF685AUO.bam bam (alignments) 3.1 GB
ENCFF686VNL.bam bam (alignments) 3.5 GB
ENCFF688XAR.bigWig bigWig (minus strand signal of unique reads) 50.6 MB
ENCFF698OQC.tsv tsv (transcript quantifications) 25.4 MB
ENCFF707DHH.bigWig bigWig (plus strand signal of unique reads) 55.6 MB
ENCFF710YBQ.bam bam (alignments) 3.0 GB
ENCFF713SAA.bigWig bigWig (plus strand signal of all reads) 55.3 MB
ENCFF728UKE.bigWig bigWig (plus strand signal of unique reads) 50.2 MB
ENCFF764PGM.tsv tsv (transcript quantifications) 27.2 MB
ENCFF776TXB.tsv tsv (gene quantifications) 10.4 MB
ENCFF793LVC.bigWig bigWig (plus strand signal of all reads) 61.7 MB
ENCFF797BBA.bigWig bigWig (minus strand signal of all reads) 62.9 MB
ENCFF799IGH.bigWig bigWig (minus strand signal of all reads) 60.5 MB
ENCFF829FZQ.bam bam (transcriptome alignments) 5.3 GB
ENCFF834QZT.bam bam (alignments) 3.1 GB
ENCFF836WKM.bigWig bigWig (plus strand signal of unique reads) 51.6 MB
ENCFF838VYP.bigWig bigWig (minus strand signal of unique reads) 52.5 MB
ENCFF858TXA.bigWig bigWig (minus strand signal of unique reads) 54.7 MB
ENCFF882QBW.bam bam (transcriptome alignments) 4.7 GB
ENCFF889HOV.bam bam (transcriptome alignments) 4.7 GB
ENCFF893QHC.bam bam (alignments) 3.1 GB
ENCFF905ARG.bam bam (alignments) 3.6 GB
ENCFF909GLY.bigWig bigWig (plus strand signal of all reads) 56.9 MB
ENCFF912IRF.tsv tsv (transcript quantifications) 25.0 MB
ENCFF921YJE.bigWig bigWig (minus strand signal of unique reads) 52.8 MB
ENCFF944ZSE.bigWig bigWig (minus strand signal of all reads) 57.1 MB
ENCFF948LBQ.bam bam (alignments) 3.6 GB
ENCFF953KDK.bigWig bigWig (minus strand signal of unique reads) 48.8 MB
ENCFF957LYE.bigWig bigWig (minus strand signal of all reads) 62.2 MB
ENCFF966RNK.bigWig bigWig (minus strand signal of unique reads) 50.3 MB
ENCFF977UBB.bigWig bigWig (plus strand signal of unique reads) 54.2 MB
ENCFF988VWE.bam bam (alignments) 2.9 GB
ENCSR032YMP ENCSR · via encode_api

Control shRNA against no target in K562 cells followed by RNA-seq. (NT_BGKLV29)

Homo sapiens

84 data files
FileTypeSize
ENCFF010THW.bigWig bigWig (minus strand signal of all reads) 80.5 MB
ENCFF015XAG.bam bam (transcriptome alignments) 8.6 GB
ENCFF021LTV.tsv tsv (transcript quantifications) 25.4 MB
ENCFF054MXT.bigWig bigWig (plus strand signal of unique reads) 90.2 MB
ENCFF064LEY.tsv tsv (transcript quantifications) 29.9 MB
ENCFF077YKA.bigWig bigWig (minus strand signal of unique reads) 69.7 MB
ENCFF083EEO.bam bam (alignments) 5.4 GB
ENCFF092LHN.tsv tsv (transcript quantifications) 29.9 MB
ENCFF097ZDD.bigWig bigWig (minus strand signal of unique reads) 88.5 MB
ENCFF109UAW.bam bam (alignments) 8.1 GB
ENCFF128JCQ.bam bam (alignments) 5.4 GB
ENCFF131GLV.bigWig bigWig (plus strand signal of unique reads) 83.0 MB
ENCFF135WYE.tsv tsv (gene quantifications) 10.4 MB
ENCFF137EBA.bigWig bigWig (plus strand signal of unique reads) 74.8 MB
ENCFF140ACK.tsv tsv (transcript quantifications) 27.4 MB
ENCFF148ZYD.bigWig bigWig (plus strand signal of unique reads) 78.7 MB
ENCFF162FQZ.bam bam (alignments) 6.5 GB
ENCFF179SPA.bigWig bigWig (minus strand signal of unique reads) 78.9 MB
ENCFF181IAL.bam bam (alignments) 6.5 GB
ENCFF181IXI.bigWig bigWig (minus strand signal of all reads) 93.0 MB
ENCFF182GVB.bigWig bigWig (plus strand signal of all reads) 89.0 MB
ENCFF189KKN.bigWig bigWig (plus strand signal of all reads) 85.9 MB
ENCFF223SOU.bigWig bigWig (minus strand signal of unique reads) 73.3 MB
ENCFF228OQQ.bigWig bigWig (plus strand signal of all reads) 81.7 MB
ENCFF253FMN.bigWig bigWig (minus strand signal of unique reads) 81.8 MB
ENCFF274DZP.bigWig bigWig (plus strand signal of unique reads) 71.4 MB
ENCFF278MBY.bam bam (transcriptome alignments) 8.6 GB
ENCFF289XFQ.bigWig bigWig (minus strand signal of all reads) 100.9 MB
ENCFF290TMG.bigWig bigWig (minus strand signal of unique reads) 87.9 MB
ENCFF295UHX.bigWig bigWig (plus strand signal of all reads) 102.5 MB
ENCFF338UAG.bigWig bigWig (minus strand signal of unique reads) 76.8 MB
ENCFF342EIR.bigWig bigWig (minus strand signal of unique reads) 88.7 MB
ENCFF352SRA.fastq fastq (reads) 3.4 GB
ENCFF360FDH.bigWig bigWig (minus strand signal of unique reads) 81.6 MB
ENCFF376MLP.bigWig bigWig (minus strand signal of all reads) 84.6 MB
ENCFF376UYJ.bigWig bigWig (plus strand signal of all reads) 101.8 MB
ENCFF388SXO.bigWig bigWig (minus strand signal of all reads) 101.7 MB
ENCFF396VZW.tsv tsv (gene quantifications) 10.4 MB
ENCFF398CQF.bam bam (transcriptome alignments) 7.0 GB
ENCFF416QWT.bigWig bigWig (plus strand signal of all reads) 78.0 MB
ENCFF424SES.bigWig bigWig (minus strand signal of all reads) 87.7 MB
ENCFF431LPC.tsv tsv (gene quantifications) 9.5 MB
ENCFF438BWE.bigWig bigWig (plus strand signal of all reads) 80.1 MB
ENCFF452SDP.tsv tsv (transcript quantifications) 25.4 MB
ENCFF471AKF.bam bam (alignments) 6.8 GB
ENCFF485VBQ.bigWig bigWig (plus strand signal of unique reads) 74.9 MB
ENCFF488MRN.bigWig bigWig (minus strand signal of all reads) 101.7 MB
ENCFF553PEN.fastq fastq (reads) 4.4 GB
ENCFF597HWY.bigWig bigWig (plus strand signal of all reads) 102.5 MB
ENCFF602ISW.bigWig bigWig (minus strand signal of unique reads) 80.0 MB
ENCFF608LBG.bam bam (alignments) 6.8 GB
ENCFF621QFW.bigWig bigWig (minus strand signal of all reads) 92.1 MB
ENCFF637EQR.bigWig bigWig (plus strand signal of unique reads) 83.4 MB
ENCFF642XQV.bam bam (alignments) 8.2 GB
ENCFF643CNA.bigWig bigWig (plus strand signal of all reads) 93.9 MB
ENCFF648QDI.bigWig bigWig (plus strand signal of all reads) 86.1 MB
ENCFF662OBG.bam bam (transcriptome alignments) 6.9 GB
ENCFF675OPX.tsv tsv (transcript quantifications) 27.4 MB
ENCFF678TOW.bigWig bigWig (plus strand signal of unique reads) 83.4 MB
ENCFF684ZSQ.bigWig bigWig (plus strand signal of all reads) 93.0 MB
ENCFF693IMA.bigWig bigWig (minus strand signal of all reads) 85.3 MB
ENCFF743EKS.fastq fastq (reads) 4.3 GB
ENCFF746YMW.bigWig bigWig (minus strand signal of all reads) 76.8 MB
ENCFF747VRN.bigWig bigWig (minus strand signal of all reads) 93.0 MB
ENCFF763PHS.bam bam (transcriptome alignments) 7.8 GB
ENCFF767SWJ.bigWig bigWig (minus strand signal of unique reads) 73.5 MB
ENCFF778VPK.bam bam (transcriptome alignments) 9.7 GB
ENCFF807WEV.tsv tsv (transcript quantifications) 25.0 MB
ENCFF808DUP.tsv tsv (gene quantifications) 9.5 MB
ENCFF808WAQ.bam bam (alignments) 8.2 GB
ENCFF809LLU.tsv tsv (gene quantifications) 9.1 MB
ENCFF827AVO.bam bam (alignments) 6.4 GB
ENCFF837YWN.bigWig bigWig (plus strand signal of unique reads) 90.6 MB
ENCFF847LLP.bam bam (alignments) 5.4 GB
ENCFF852RBO.fastq fastq (reads) 3.4 GB
ENCFF892JST.bigWig bigWig (minus strand signal of unique reads) 81.4 MB
ENCFF893TIP.bigWig bigWig (plus strand signal of unique reads) 81.8 MB
ENCFF951HPS.tsv tsv (gene quantifications) 9.1 MB
ENCFF954DKV.bigWig bigWig (plus strand signal of all reads) 93.9 MB
ENCFF970NJD.bigWig bigWig (minus strand signal of all reads) 79.3 MB
ENCFF981ARO.bigWig bigWig (plus strand signal of unique reads) 80.5 MB
ENCFF985DZL.bam bam (alignments) 6.8 GB
ENCFF994JIN.bigWig bigWig (plus strand signal of unique reads) 89.5 MB
ENCFF995SEV.tsv tsv (transcript quantifications) 24.9 MB
ENCSR265XUT ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) input control experiment of PCBP2 and SFPQ

1 data file
FileTypeSize
ENCFF816DFV.fastq fastq (reads) 403.7 MB
ENCSR742AEU ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) pulldown experiment against RBM24

13 data files
FileTypeSize
ENCFF044NVM.tsv tsv (enrichment) 41.0 KB
ENCFF132AEB.tsv tsv (enrichment) 688.0 KB
ENCFF145YVB.tsv tsv (library fraction) 63.9 KB
ENCFF168GEY.tsv tsv (enrichment) 168.0 KB
ENCFF188LGM.tsv tsv (library fraction) 1.1 MB
ENCFF211URD.fastq fastq (reads) 493.7 MB
ENCFF262TWQ.tsv tsv (library fraction) 265.4 KB
ENCFF355UIV.fastq fastq (reads) 519.1 MB
ENCFF522SCZ.tsv tsv (enrichment) 10.0 KB
ENCFF583TUC.fastq fastq (reads) 674.0 MB
ENCFF615IDC.tsv tsv (library fraction) 15.0 KB
ENCFF698TXB.fastq fastq (reads) 626.1 MB
ENCFF948RIV.fastq fastq (reads) 581.6 MB
ENCSR492CFG ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) pulldown experiment against RBMS2

13 data files
FileTypeSize
ENCFF026BON.tsv tsv (library fraction) 15.3 KB
ENCFF068ROJ.tsv tsv (library fraction) 64.2 KB
ENCFF121XIB.tsv tsv (library fraction) 1.1 MB
ENCFF198OFN.tsv tsv (enrichment) 10.0 KB
ENCFF231KTD.fastq fastq (reads) 459.8 MB
ENCFF273JFY.fastq fastq (reads) 360.3 MB
ENCFF324ZYT.fastq fastq (reads) 343.7 MB
ENCFF452FCJ.fastq fastq (reads) 759.3 MB
ENCFF514HLE.tsv tsv (enrichment) 688.0 KB
ENCFF729OVU.tsv tsv (enrichment) 168.0 KB
ENCFF820PEE.fastq fastq (reads) 589.1 MB
ENCFF833TOX.tsv tsv (enrichment) 41.0 KB
ENCFF965KGQ.tsv tsv (library fraction) 265.2 KB
ENCSR110HAA ENCSR · via encode_api

RNA-seq on HepG2 cells treated with an shRNA knockdown against EIF2S2. (EIF2S2_BGHLV30)

Homo sapiens

92 data files
FileTypeSize
ENCFF011RPS.bigWig bigWig (minus strand signal of unique reads) 67.5 MB
ENCFF012EUH.tsv tsv (transcript quantifications) 27.3 MB
ENCFF017DPI.bigWig bigWig (minus strand signal of all reads) 75.7 MB
ENCFF028TAA.bigWig bigWig (plus strand signal of all reads) 77.4 MB
ENCFF031ILO.tsv tsv (transcript quantifications) 25.4 MB
ENCFF043HOI.bigWig bigWig (plus strand signal of all reads) 84.1 MB
ENCFF058YTH.bigWig bigWig (minus strand signal of unique reads) 76.1 MB
ENCFF059LHM.bigWig bigWig (plus strand signal of unique reads) 82.2 MB
ENCFF061EXE.bigWig bigWig (plus strand signal of all reads) 69.3 MB
ENCFF061HNY.tar tar (differential splicing quantifications) 3.9 MB
ENCFF079OVB.bam bam (alignments) 4.8 GB
ENCFF084VUF.bam bam (alignments) 3.9 GB
ENCFF113LLR.bam bam (transcriptome alignments) 6.6 GB
ENCFF133UZR.bigWig bigWig (minus strand signal of all reads) 69.3 MB
ENCFF137QNH.bam bam (alignments) 3.0 GB
ENCFF145EMC.bigWig bigWig (minus strand signal of all reads) 73.9 MB
ENCFF165KMM.bigWig bigWig (minus strand signal of all reads) 82.1 MB
ENCFF167NWH.bigWig bigWig (plus strand signal of unique reads) 63.4 MB
ENCFF171PLV.bigWig bigWig (plus strand signal of all reads) 70.9 MB
ENCFF171WOT.bigWig bigWig (plus strand signal of all reads) 91.6 MB
ENCFF207XGV.bam bam (alignments) 5.0 GB
ENCFF210SXC.bigWig bigWig (plus strand signal of all reads) 91.5 MB
ENCFF218GFR.bam bam (transcriptome alignments) 5.0 GB
ENCFF233HMZ.tsv tsv (transcript quantifications) 24.9 MB
ENCFF233LUE.tsv tsv (differential expression quantifications) 1.8 MB
ENCFF240ZJB.bam bam (transcriptome alignments) 5.0 GB
ENCFF257FNP.bam bam (alignments) 4.0 GB
ENCFF276TMN.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF276VAM.bigWig bigWig (plus strand signal of unique reads) 68.3 MB
ENCFF277ENN.bigWig bigWig (minus strand signal of unique reads) 64.0 MB
ENCFF288DJO.bigWig bigWig (plus strand signal of all reads) 68.6 MB
ENCFF295MUI.bigWig bigWig (minus strand signal of all reads) 89.6 MB
ENCFF298PCE.bigWig bigWig (minus strand signal of unique reads) 75.6 MB
ENCFF302OQX.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF307EYC.bam bam (alignments) 3.0 GB
ENCFF312YHC.tsv tsv (gene quantifications) 9.1 MB
ENCFF316ELT.bigWig bigWig (plus strand signal of unique reads) 78.4 MB
ENCFF327DMX.bigWig bigWig (minus strand signal of all reads) 75.7 MB
ENCFF353BOB.bam bam (transcriptome alignments) 6.6 GB
ENCFF388KYN.tsv tsv (gene quantifications) 9.1 MB
ENCFF395LOI.tsv tsv (transcript quantifications) 29.9 MB
ENCFF428BST.bam bam (alignments) 5.0 GB
ENCFF428FIL.fastq fastq (reads) 2.9 GB
ENCFF428YVT.bigWig bigWig (minus strand signal of all reads) 88.9 MB
ENCFF433PXA.bam bam (transcriptome alignments) 5.7 GB
ENCFF440ZHA.bigWig bigWig (minus strand signal of unique reads) 66.3 MB
ENCFF441FHH.bigWig bigWig (minus strand signal of all reads) 89.6 MB
ENCFF465UNJ.tsv tsv (transcript quantifications) 29.8 MB
ENCFF475EQO.tar tar (differential splicing quantifications) 3.4 MB
ENCFF478QZR.bigWig bigWig (minus strand signal of all reads) 66.9 MB
ENCFF493XZO.bam bam (alignments) 3.0 GB
ENCFF505FZL.bigWig bigWig (minus strand signal of all reads) 67.8 MB
ENCFF505ZMB.bam bam (alignments) 3.7 GB
ENCFF507XLS.tsv tsv (gene quantifications) 9.5 MB
ENCFF528NQA.tsv tsv (transcript quantifications) 25.3 MB
ENCFF554LYR.tsv tsv (gene quantifications) 10.4 MB
ENCFF557CNG.bigWig bigWig (plus strand signal of all reads) 82.0 MB
ENCFF577QKA.bigWig bigWig (minus strand signal of unique reads) 79.7 MB
ENCFF584DUG.bigWig bigWig (plus strand signal of all reads) 77.4 MB
ENCFF586FLR.bigWig bigWig (minus strand signal of unique reads) 79.6 MB
ENCFF595CBU.tsv tsv (gene quantifications) 10.4 MB
ENCFF632VKY.fastq fastq (reads) 2.1 GB
ENCFF641CRN.bigWig bigWig (plus strand signal of all reads) 90.7 MB
ENCFF642MGZ.bam bam (alignments) 3.6 GB
ENCFF652IZA.tsv tsv (transcript quantifications) 25.0 MB
ENCFF676GIS.bigWig bigWig (plus strand signal of unique reads) 78.1 MB
ENCFF691DNV.bigWig bigWig (plus strand signal of all reads) 75.3 MB
ENCFF694HGE.bigWig bigWig (minus strand signal of unique reads) 66.9 MB
ENCFF708FMN.bigWig bigWig (plus strand signal of unique reads) 82.2 MB
ENCFF737CZT.bam bam (alignments) 3.9 GB
ENCFF767DDJ.fastq fastq (reads) 2.2 GB
ENCFF769GZK.bigWig bigWig (plus strand signal of unique reads) 69.0 MB
ENCFF788WQN.bigWig bigWig (plus strand signal of unique reads) 69.6 MB
ENCFF796SGY.bam bam (alignments) 3.7 GB
ENCFF806OQF.tsv tsv (gene quantifications) 9.5 MB
ENCFF832AJB.bigWig bigWig (plus strand signal of unique reads) 65.8 MB
ENCFF836DOR.bam bam (transcriptome alignments) 7.5 GB
ENCFF857VVI.bigWig bigWig (plus strand signal of unique reads) 66.1 MB
ENCFF874BUK.bigWig bigWig (plus strand signal of unique reads) 76.3 MB
ENCFF874XFI.bigWig bigWig (plus strand signal of all reads) 81.7 MB
ENCFF875YKJ.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF892FDK.bigWig bigWig (plus strand signal of unique reads) 81.9 MB
ENCFF902RZU.bigWig bigWig (minus strand signal of unique reads) 73.7 MB
ENCFF926OAS.tar tar (differential splicing quantifications) 15.6 MB
ENCFF930ETW.bigWig bigWig (minus strand signal of all reads) 79.7 MB
ENCFF930WKL.tsv tsv (differential expression quantifications) 4.2 MB
ENCFF953MPH.tsv tsv (transcript quantifications) 27.4 MB
ENCFF975QUQ.bigWig bigWig (minus strand signal of unique reads) 61.3 MB
ENCFF975ZUS.bigWig bigWig (minus strand signal of unique reads) 79.4 MB
ENCFF980CIX.bigWig bigWig (minus strand signal of all reads) 80.1 MB
ENCFF997LLU.bigWig bigWig (minus strand signal of unique reads) 64.1 MB
ENCFF999OKL.fastq fastq (reads) 2.9 GB
ENCSR105NML ENCSR · via encode_api

Control CRISPR gRNA against no target in HepG2 cells followed by RNA-seq. (NT_BGHcLV03)

Homo sapiens

84 data files
FileTypeSize
ENCFF020ZHI.bigWig bigWig (plus strand signal of all reads) 72.2 MB
ENCFF022AWO.bigWig bigWig (minus strand signal of all reads) 70.8 MB
ENCFF027EAD.bigWig bigWig (minus strand signal of unique reads) 87.7 MB
ENCFF072STF.bigWig bigWig (plus strand signal of all reads) 98.9 MB
ENCFF088HLS.bigWig bigWig (minus strand signal of unique reads) 59.5 MB
ENCFF118UBY.bigWig bigWig (plus strand signal of unique reads) 94.5 MB
ENCFF126EMB.bam bam (transcriptome alignments) 4.0 GB
ENCFF127PRQ.bigWig bigWig (minus strand signal of all reads) 96.9 MB
ENCFF134QUL.bam bam (alignments) 5.2 GB
ENCFF155XYT.tsv tsv (transcript quantifications) 25.4 MB
ENCFF200WPX.bigWig bigWig (minus strand signal of all reads) 98.4 MB
ENCFF227XRI.bam bam (alignments) 3.2 GB
ENCFF243OPX.bigWig bigWig (plus strand signal of unique reads) 62.2 MB
ENCFF248MQB.bigWig bigWig (minus strand signal of all reads) 107.8 MB
ENCFF255GEL.fastq fastq (reads) 1.7 GB
ENCFF271PZT.bam bam (alignments) 6.3 GB
ENCFF272JSE.tsv tsv (gene quantifications) 9.1 MB
ENCFF274TPD.bigWig bigWig (plus strand signal of all reads) 98.7 MB
ENCFF299GUW.fastq fastq (reads) 3.6 GB
ENCFF307TXL.tsv tsv (gene quantifications) 9.4 MB
ENCFF328YHX.bam bam (alignments) 3.2 GB
ENCFF335JYY.bigWig bigWig (minus strand signal of unique reads) 60.4 MB
ENCFF335VNY.bigWig bigWig (plus strand signal of unique reads) 99.9 MB
ENCFF347ZCL.tsv tsv (transcript quantifications) 24.9 MB
ENCFF348KKT.bigWig bigWig (minus strand signal of unique reads) 63.5 MB
ENCFF361YQX.bigWig bigWig (plus strand signal of all reads) 109.9 MB
ENCFF363BFX.bigWig bigWig (minus strand signal of unique reads) 97.1 MB
ENCFF370KZT.bam bam (transcriptome alignments) 4.6 GB
ENCFF385ERH.bigWig bigWig (plus strand signal of all reads) 71.6 MB
ENCFF394RLU.tsv tsv (transcript quantifications) 29.8 MB
ENCFF398XOA.bigWig bigWig (plus strand signal of unique reads) 61.1 MB
ENCFF402LNF.bam bam (transcriptome alignments) 8.6 GB
ENCFF415BFA.bigWig bigWig (minus strand signal of all reads) 70.8 MB
ENCFF452TPJ.bigWig bigWig (plus strand signal of all reads) 65.3 MB
ENCFF471ZAI.bigWig bigWig (minus strand signal of all reads) 61.8 MB
ENCFF495IPN.bigWig bigWig (plus strand signal of unique reads) 100.0 MB
ENCFF501ESQ.bigWig bigWig (plus strand signal of all reads) 72.2 MB
ENCFF513ZDV.bigWig bigWig (minus strand signal of unique reads) 62.8 MB
ENCFF524BER.bigWig bigWig (minus strand signal of all reads) 107.8 MB
ENCFF531OTI.bigWig bigWig (minus strand signal of unique reads) 91.6 MB
ENCFF534AWV.bam bam (alignments) 2.5 GB
ENCFF534FCM.tsv tsv (gene quantifications) 9.5 MB
ENCFF566NPD.bam bam (transcriptome alignments) 9.8 GB
ENCFF567BKL.bigWig bigWig (minus strand signal of unique reads) 62.8 MB
ENCFF579WLA.bam bam (alignments) 5.2 GB
ENCFF581HRW.bigWig bigWig (minus strand signal of all reads) 96.7 MB
ENCFF582GSM.fastq fastq (reads) 3.7 GB
ENCFF584OBO.bigWig bigWig (plus strand signal of all reads) 100.6 MB
ENCFF604GAP.tsv tsv (transcript quantifications) 27.5 MB
ENCFF605VFW.bigWig bigWig (minus strand signal of all reads) 64.0 MB
ENCFF610YUG.bam bam (transcriptome alignments) 8.6 GB
ENCFF618HYU.bam bam (alignments) 2.5 GB
ENCFF623BGT.bam bam (transcriptome alignments) 4.0 GB
ENCFF631QNO.bigWig bigWig (plus strand signal of all reads) 63.0 MB
ENCFF659VUX.bigWig bigWig (plus strand signal of unique reads) 98.5 MB
ENCFF674QBC.bigWig bigWig (plus strand signal of all reads) 66.1 MB
ENCFF692DLW.bigWig bigWig (plus strand signal of unique reads) 65.4 MB
ENCFF703VLV.tsv tsv (gene quantifications) 10.4 MB
ENCFF704QTB.bigWig bigWig (minus strand signal of unique reads) 91.7 MB
ENCFF704SOR.bam bam (alignments) 3.0 GB
ENCFF713GXF.bam bam (alignments) 6.5 GB
ENCFF713PMZ.bigWig bigWig (plus strand signal of unique reads) 90.3 MB
ENCFF729CQM.bigWig bigWig (plus strand signal of all reads) 108.3 MB
ENCFF748XRD.bigWig bigWig (plus strand signal of unique reads) 94.3 MB
ENCFF760REE.tsv tsv (transcript quantifications) 25.3 MB
ENCFF772KVI.tsv tsv (transcript quantifications) 25.0 MB
ENCFF816DSO.tsv tsv (gene quantifications) 9.1 MB
ENCFF818HSH.tsv tsv (transcript quantifications) 27.2 MB
ENCFF826ZFM.tsv tsv (transcript quantifications) 29.9 MB
ENCFF827SPO.bigWig bigWig (minus strand signal of all reads) 64.6 MB
ENCFF832YHW.bigWig bigWig (minus strand signal of all reads) 106.5 MB
ENCFF845QKW.bigWig bigWig (plus strand signal of unique reads) 64.7 MB
ENCFF848OBC.bam bam (alignments) 6.5 GB
ENCFF851DOF.bigWig bigWig (plus strand signal of all reads) 109.9 MB
ENCFF861PVI.bigWig bigWig (minus strand signal of unique reads) 97.0 MB
ENCFF864HTN.tsv tsv (gene quantifications) 10.4 MB
ENCFF882WZK.bam bam (alignments) 5.2 GB
ENCFF894GRF.bigWig bigWig (plus strand signal of unique reads) 64.7 MB
ENCFF923THK.bam bam (alignments) 2.6 GB
ENCFF925RZK.bigWig bigWig (minus strand signal of unique reads) 57.5 MB
ENCFF930LDL.fastq fastq (reads) 1.7 GB
ENCFF940JAW.bigWig bigWig (minus strand signal of unique reads) 95.6 MB
ENCFF944FCU.bigWig bigWig (minus strand signal of all reads) 70.3 MB
ENCFF966AGE.bigWig bigWig (plus strand signal of unique reads) 59.1 MB
ENCSR247XFV ENCSR · via encode_api

KIAA1967 ChIP-seq on HepG2

Homo sapiens

64 data files
FileTypeSize
ENCFF004RUY.bam bam (unfiltered alignments) 2.0 GB
ENCFF012EGY.bam bam (alignments) 662.9 MB
ENCFF013SWZ.bed bed (peaks and background as input for IDR) 5.0 MB
ENCFF017AUX.bigWig bigWig (signal p-value) 1.1 GB
ENCFF018OZI.bigWig bigWig (signal p-value) 622.0 MB
ENCFF038FES.bed bed (IDR ranked peaks) 2.0 MB
ENCFF039LHY.bed bed (optimal IDR thresholded peaks) 53.9 KB
ENCFF060XFX.bam bam (unfiltered alignments) 2.0 GB
ENCFF072TOT.fastq fastq (reads) 1.6 GB
ENCFF073QXY.bigWig bigWig (fold change over control) 1011.5 MB
ENCFF076PPX.bigWig bigWig (fold change over control) 415.3 MB
ENCFF108AZE.bed bed (IDR thresholded peaks) 28.7 KB
ENCFF131KAW.bed bed (IDR thresholded peaks) 49.7 KB
ENCFF164VVG.bed bed (IDR ranked peaks) 3.6 MB
ENCFF165YBR.bed bed (IDR thresholded peaks) 15.7 KB
ENCFF172AES.bed bed (peaks and background as input for IDR) 6.5 MB
ENCFF179VAN.bigBed bigBed (optimal IDR thresholded peaks) 154.3 KB
ENCFF186BIU.bed bed (IDR ranked peaks) 2.7 MB
ENCFF212XQB.bam bam (unfiltered alignments) 1.9 GB
ENCFF250IFI.bigBed bigBed (peaks and background as input for IDR) 12.6 MB
ENCFF257YFY.bam bam (alignments) 717.4 MB
ENCFF265HFX.bigBed bigBed (peaks and background as input for IDR) 10.5 MB
ENCFF272YQK.bam bam (alignments) 890.1 MB
ENCFF287NMD.bam bam (alignments) 662.2 MB
ENCFF292UIZ.bed bed (peaks and background as input for IDR) 4.9 MB
ENCFF295FZL.bigBed bigBed (IDR thresholded peaks) 113.3 KB
ENCFF306YGG.bigWig bigWig (signal p-value) 857.0 MB
ENCFF337SRB.bed bed (conservative IDR thresholded peaks) 44.1 KB
ENCFF338DEV.bigBed bigBed (conservative IDR thresholded peaks) 150.7 KB
ENCFF380SSK.bigWig bigWig (signal p-value) 965.8 MB
ENCFF393VRT.bigWig bigWig (signal p-value) 995.0 MB
ENCFF416WYJ.bigWig bigWig (fold change over control) 594.7 MB
ENCFF426PCO.bam bam (unfiltered alignments) 1.9 GB
ENCFF461JBU.bigWig bigWig (signal p-value) 617.1 MB
ENCFF470NKI.bigWig bigWig (fold change over control) 1004.8 MB
ENCFF472JMW.bigBed bigBed (peaks and background as input for IDR) 10.5 MB
ENCFF476GVF.bigBed bigBed (peaks and background as input for IDR) 12.6 MB
ENCFF478GCX.bigBed bigBed (IDR thresholded peaks) 76.8 KB
ENCFF478NLQ.bed bed (conservative IDR thresholded peaks) 43.1 KB
ENCFF504CCV.bed bed (conservative IDR thresholded peaks) 50.9 KB
ENCFF526YGY.bam bam (alignments) 959.9 MB
ENCFF530JCP.bigWig bigWig (fold change over control) 487.0 MB
ENCFF561EUU.bigWig bigWig (signal p-value) 571.8 MB
ENCFF581MUI.bigWig bigWig (fold change over control) 417.2 MB
ENCFF582MJO.bigBed bigBed (conservative IDR thresholded peaks) 138.2 KB
ENCFF615WGO.bigWig bigWig (fold change over control) 1.0 GB
ENCFF619DQL.bam bam (alignments) 889.3 MB
ENCFF630STG.bam bam (unfiltered alignments) 1.9 GB
ENCFF671IJY.bed bed (optimal IDR thresholded peaks) 52.9 KB
ENCFF678XUP.bigWig bigWig (signal p-value) 1.2 GB
ENCFF716UKD.bigBed bigBed (conservative IDR thresholded peaks) 140.4 KB
ENCFF722JQU.bed bed (peaks and background as input for IDR) 5.2 MB
ENCFF746USU.fastq fastq (reads) 1.6 GB
ENCFF757SHP.bigWig bigWig (fold change over control) 698.8 MB
ENCFF764PYJ.bigBed bigBed (IDR thresholded peaks) 148.1 KB
ENCFF788OMU.bigBed bigBed (optimal IDR thresholded peaks) 156.6 KB
ENCFF824AIG.bed bed (peaks and background as input for IDR) 6.5 MB
ENCFF825OGX.bigWig bigWig (fold change over control) 480.7 MB
ENCFF825XTG.bigWig bigWig (signal p-value) 548.6 MB
ENCFF845HVY.bigBed bigBed (peaks and background as input for IDR) 12.6 MB
ENCFF862BIS.bed bed (IDR ranked peaks) 3.4 MB
ENCFF929NFJ.bed bed (peaks and background as input for IDR) 5.2 MB
ENCFF940DGR.bigBed bigBed (peaks and background as input for IDR) 12.6 MB
ENCFF985ESM.bam bam (unfiltered alignments) 2.0 GB
ENCSR032EZQ ENCSR · via encode_api

Control ChIP-seq on HepG2

Homo sapiens

14 data files
FileTypeSize
ENCFF074VCH.bam bam (unfiltered alignments) 1.6 GB
ENCFF086JZA.bam bam (unfiltered alignments) 1.2 GB
ENCFF107PCV.bam bam (alignments) 1.2 GB
ENCFF217UCE.bam bam (alignments) 959.7 MB
ENCFF319AWI.fastq fastq (reads) 1.1 GB
ENCFF386QNN.fastq fastq (reads) 888.4 MB
ENCFF427ZMQ.bam bam (unfiltered alignments) 1.6 GB
ENCFF431FEY.bam bam (unfiltered alignments) 1.2 GB
ENCFF519NYC.bam bam (alignments) 1000.5 MB
ENCFF619YOF.bam bam (alignments) 958.8 MB
ENCFF630RVM.bam bam (unfiltered alignments) 1.6 GB
ENCFF668JET.bam bam (alignments) 1.3 GB
ENCFF773YEE.bam bam (unfiltered alignments) 1.2 GB
ENCFF825CNQ.bam bam (alignments) 1.2 GB
ENCSR268XHM ENCSR · via encode_api

RNA-seq on HepG2 cells treated with a CRISPR gRNA against IGF2BP1. (IGF2BP1_BGHcLV03)

Homo sapiens

92 data files
FileTypeSize
ENCFF009HNI.tsv tsv (transcript quantifications) 24.9 MB
ENCFF015HRF.bam bam (alignments) 4.0 GB
ENCFF024LZP.bam bam (transcriptome alignments) 4.7 GB
ENCFF027YGR.tsv tsv (transcript quantifications) 29.8 MB
ENCFF030THE.bigWig bigWig (plus strand signal of all reads) 65.8 MB
ENCFF041AHR.bigWig bigWig (minus strand signal of unique reads) 66.8 MB
ENCFF051UMI.fastq fastq (reads) 2.0 GB
ENCFF089IHL.bigWig bigWig (plus strand signal of unique reads) 64.2 MB
ENCFF092XRD.bigWig bigWig (minus strand signal of unique reads) 65.8 MB
ENCFF104QVV.bigWig bigWig (minus strand signal of unique reads) 62.6 MB
ENCFF109PAQ.bam bam (transcriptome alignments) 5.9 GB
ENCFF125PAU.bam bam (transcriptome alignments) 5.2 GB
ENCFF128LYD.bigWig bigWig (plus strand signal of all reads) 80.6 MB
ENCFF135FNM.bam bam (transcriptome alignments) 5.1 GB
ENCFF145LVT.bigWig bigWig (minus strand signal of all reads) 80.5 MB
ENCFF147UCX.tsv tsv (transcript quantifications) 29.8 MB
ENCFF169MAO.bigWig bigWig (minus strand signal of all reads) 79.5 MB
ENCFF177UID.fastq fastq (reads) 2.0 GB
ENCFF178ASM.bigWig bigWig (plus strand signal of all reads) 67.4 MB
ENCFF219PQC.bam bam (alignments) 2.9 GB
ENCFF257ZRI.bigWig bigWig (plus strand signal of all reads) 74.1 MB
ENCFF258BYE.tsv tsv (differential expression quantifications) 4.4 MB
ENCFF274ZHS.bigWig bigWig (minus strand signal of all reads) 80.5 MB
ENCFF326QKH.bam bam (alignments) 2.9 GB
ENCFF328QSQ.bam bam (alignments) 3.6 GB
ENCFF334VSZ.bigWig bigWig (plus strand signal of unique reads) 68.4 MB
ENCFF335OGN.bigWig bigWig (minus strand signal of unique reads) 71.9 MB
ENCFF335UER.bigWig bigWig (plus strand signal of all reads) 68.0 MB
ENCFF339FKE.tsv tsv (differential expression quantifications) 1.8 MB
ENCFF356IJD.bigWig bigWig (plus strand signal of unique reads) 67.4 MB
ENCFF384APO.bam bam (alignments) 3.1 GB
ENCFF396EBY.tsv tsv (transcript quantifications) 25.3 MB
ENCFF409LBZ.tsv tsv (gene quantifications) 9.1 MB
ENCFF421AHT.tsv tsv (gene quantifications) 9.4 MB
ENCFF424WES.bigWig bigWig (minus strand signal of unique reads) 71.9 MB
ENCFF425TYO.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF441KJL.bigWig bigWig (minus strand signal of unique reads) 67.7 MB
ENCFF443OXT.tar tar (differential splicing quantifications) 4.6 MB
ENCFF467BIY.bigWig bigWig (minus strand signal of unique reads) 65.8 MB
ENCFF483QPN.tar tar (differential splicing quantifications) 3.5 MB
ENCFF492JLY.bigWig bigWig (plus strand signal of unique reads) 67.5 MB
ENCFF493XFF.bigWig bigWig (plus strand signal of all reads) 74.5 MB
ENCFF508PWG.bam bam (transcriptome alignments) 4.7 GB
ENCFF529TVA.bigWig bigWig (minus strand signal of all reads) 66.8 MB
ENCFF569GNF.tsv tsv (gene quantifications) 9.5 MB
ENCFF574ZDF.bigWig bigWig (plus strand signal of all reads) 72.6 MB
ENCFF592KNB.bigWig bigWig (plus strand signal of all reads) 81.8 MB
ENCFF606FAF.tsv tsv (transcript quantifications) 24.9 MB
ENCFF618GTO.bam bam (alignments) 3.2 GB
ENCFF619DHD.tsv tsv (differential expression quantifications) 2.0 MB
ENCFF620IYD.bigWig bigWig (minus strand signal of all reads) 71.4 MB
ENCFF629QDM.tsv tsv (differential expression quantifications) 5.7 MB
ENCFF630PZX.bam bam (alignments) 3.1 GB
ENCFF632WUD.bigWig bigWig (minus strand signal of unique reads) 59.6 MB
ENCFF638BUG.bigWig bigWig (plus strand signal of unique reads) 73.7 MB
ENCFF641TDC.fastq fastq (reads) 2.2 GB
ENCFF651YMM.bam bam (alignments) 3.5 GB
ENCFF679SUH.bigWig bigWig (minus strand signal of all reads) 70.0 MB
ENCFF685FMT.tsv tsv (transcript quantifications) 25.3 MB
ENCFF697EGJ.bigWig bigWig (plus strand signal of unique reads) 69.4 MB
ENCFF701EZL.bigWig bigWig (plus strand signal of unique reads) 67.4 MB
ENCFF706RXY.bigWig bigWig (plus strand signal of unique reads) 61.2 MB
ENCFF712MFS.fastq fastq (reads) 2.2 GB
ENCFF716CBD.bigWig bigWig (minus strand signal of unique reads) 65.5 MB
ENCFF737BUO.bigWig bigWig (plus strand signal of unique reads) 73.7 MB
ENCFF740TOC.bigWig bigWig (plus strand signal of all reads) 81.9 MB
ENCFF746BKB.bigWig bigWig (plus strand signal of unique reads) 73.2 MB
ENCFF750JCA.tsv tsv (gene quantifications) 9.1 MB
ENCFF757OAU.tsv tsv (transcript quantifications) 27.3 MB
ENCFF790MJW.bigWig bigWig (minus strand signal of unique reads) 71.4 MB
ENCFF794WIM.bam bam (alignments) 3.0 GB
ENCFF811JXY.bigWig bigWig (plus strand signal of all reads) 74.1 MB
ENCFF829AWU.bigWig bigWig (plus strand signal of all reads) 73.2 MB
ENCFF832COL.bigWig bigWig (minus strand signal of all reads) 73.2 MB
ENCFF848XKY.tsv tsv (gene quantifications) 10.4 MB
ENCFF854YZR.bam bam (alignments) 3.6 GB
ENCFF862LZE.bam bam (transcriptome alignments) 5.4 GB
ENCFF870XXZ.bigWig bigWig (plus strand signal of unique reads) 62.8 MB
ENCFF879XHP.bigWig bigWig (minus strand signal of all reads) 66.3 MB
ENCFF882OYW.bam bam (alignments) 4.0 GB
ENCFF892ODN.bigWig bigWig (minus strand signal of all reads) 64.6 MB
ENCFF894KAP.bigWig bigWig (plus strand signal of unique reads) 67.3 MB
ENCFF910DUY.bigWig bigWig (minus strand signal of unique reads) 65.8 MB
ENCFF913UIC.bigWig bigWig (minus strand signal of all reads) 72.9 MB
ENCFF924NIX.bigWig bigWig (minus strand signal of all reads) 72.2 MB
ENCFF930RGH.bam bam (alignments) 3.8 GB
ENCFF934ZJW.tar tar (differential splicing quantifications) 16.2 MB
ENCFF938UAX.bigWig bigWig (plus strand signal of all reads) 71.3 MB
ENCFF979ELQ.bigWig bigWig (minus strand signal of unique reads) 61.4 MB
ENCFF987FVR.tsv tsv (gene quantifications) 10.4 MB
ENCFF996AVA.tsv tsv (transcript quantifications) 27.4 MB
ENCFF998XMK.bigWig bigWig (minus strand signal of all reads) 72.8 MB
ENCSR821CTW ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) input control experiment of BOLL

1 data file
FileTypeSize
ENCFF812GKQ.fastq fastq (reads) 470.3 MB
ENCSR769AEI ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) pulldown experiment against PCBP4

13 data files
FileTypeSize
ENCFF005EAZ.tsv tsv (library fraction) 15.1 KB
ENCFF024KDW.fastq fastq (reads) 445.7 MB
ENCFF065MZA.fastq fastq (reads) 261.4 MB
ENCFF239XFN.tsv tsv (enrichment) 168.0 KB
ENCFF305FFO.tsv tsv (library fraction) 1.1 MB
ENCFF536CUG.tsv tsv (enrichment) 41.0 KB
ENCFF549QKX.tsv tsv (enrichment) 688.0 KB
ENCFF661CYO.tsv tsv (enrichment) 10.0 KB
ENCFF780YHK.tsv tsv (library fraction) 265.6 KB
ENCFF814SIC.fastq fastq (reads) 273.9 MB
ENCFF844KLM.tsv tsv (library fraction) 63.8 KB
ENCFF871CCW.fastq fastq (reads) 307.9 MB
ENCFF922HKT.fastq fastq (reads) 219.5 MB
ENCSR311QXT ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) input control experiment of RBMS2

1 data file
FileTypeSize
ENCFF395NJM.fastq fastq (reads) 446.4 MB
ENCSR837OWO ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) input control experiment of PCBP1 and SECP43

1 data file
FileTypeSize
ENCFF395ETZ.fastq fastq (reads) 230.7 MB
ENCSR384LKC ENCSR · via encode_api

RNA-seq on K562 cells treated with a CRISPR gRNA against DDX21. (DDX21_BGKcLV02)

Homo sapiens

92 data files
FileTypeSize
ENCFF018ZEF.bam bam (alignments) 5.3 GB
ENCFF023GJS.tsv tsv (transcript quantifications) 29.8 MB
ENCFF025TLM.tsv tsv (gene quantifications) 9.1 MB
ENCFF053UYV.bigWig bigWig (plus strand signal of unique reads) 105.8 MB
ENCFF055BML.bigWig bigWig (plus strand signal of all reads) 102.7 MB
ENCFF075BON.bigWig bigWig (plus strand signal of all reads) 120.7 MB
ENCFF083ZER.tsv tsv (gene quantifications) 9.5 MB
ENCFF097ROA.bigWig bigWig (minus strand signal of unique reads) 98.6 MB
ENCFF110KWL.tsv tsv (differential expression quantifications) 2.0 MB
ENCFF144NND.bigWig bigWig (plus strand signal of unique reads) 98.0 MB
ENCFF152WAH.bigWig bigWig (plus strand signal of unique reads) 92.7 MB
ENCFF159DYL.bigWig bigWig (plus strand signal of all reads) 120.8 MB
ENCFF171PHU.bigWig bigWig (plus strand signal of all reads) 90.8 MB
ENCFF174HHY.bam bam (alignments) 4.3 GB
ENCFF176EYL.tsv tsv (transcript quantifications) 29.8 MB
ENCFF194THZ.bigWig bigWig (plus strand signal of all reads) 118.0 MB
ENCFF195JNX.bigWig bigWig (plus strand signal of unique reads) 92.1 MB
ENCFF208KYQ.bigWig bigWig (plus strand signal of unique reads) 86.0 MB
ENCFF224IQP.bigWig bigWig (minus strand signal of unique reads) 84.1 MB
ENCFF227NQN.tsv tsv (gene quantifications) 10.4 MB
ENCFF233JQM.tar tar (differential splicing quantifications) 4.2 MB
ENCFF238IDT.bigWig bigWig (minus strand signal of unique reads) 81.4 MB
ENCFF240KYG.bigWig bigWig (plus strand signal of unique reads) 92.8 MB
ENCFF252DHT.bam bam (alignments) 3.5 GB
ENCFF267ALV.bigWig bigWig (minus strand signal of unique reads) 90.1 MB
ENCFF301DDS.bigWig bigWig (minus strand signal of all reads) 119.4 MB
ENCFF305QYC.fastq fastq (reads) 3.0 GB
ENCFF317RSC.bigWig bigWig (minus strand signal of all reads) 102.5 MB
ENCFF318PLY.bigWig bigWig (plus strand signal of all reads) 94.6 MB
ENCFF320YZT.bigWig bigWig (minus strand signal of unique reads) 84.7 MB
ENCFF324LAA.bigWig bigWig (minus strand signal of all reads) 89.2 MB
ENCFF335NEO.bigWig bigWig (minus strand signal of unique reads) 99.3 MB
ENCFF336PTW.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF341UPH.tsv tsv (differential expression quantifications) 4.4 MB
ENCFF346LTL.tsv tsv (transcript quantifications) 25.3 MB
ENCFF349BIK.bigWig bigWig (minus strand signal of unique reads) 90.5 MB
ENCFF349FOA.bigWig bigWig (minus strand signal of unique reads) 104.2 MB
ENCFF357EDW.bigWig bigWig (minus strand signal of all reads) 105.8 MB
ENCFF357JGQ.bigWig bigWig (minus strand signal of unique reads) 95.4 MB
ENCFF359FHR.bigWig bigWig (minus strand signal of all reads) 116.6 MB
ENCFF366YYW.tar tar (differential splicing quantifications) 16.6 MB
ENCFF371RQO.bigWig bigWig (plus strand signal of unique reads) 83.7 MB
ENCFF371XPU.tar tar (differential splicing quantifications) 5.0 MB
ENCFF373EZQ.tsv tsv (transcript quantifications) 24.9 MB
ENCFF389YPB.tsv tsv (transcript quantifications) 25.3 MB
ENCFF394RQF.bam bam (transcriptome alignments) 6.2 GB
ENCFF395GBG.tsv tsv (gene quantifications) 10.4 MB
ENCFF404NEF.bam bam (transcriptome alignments) 5.4 GB
ENCFF415SUR.bigWig bigWig (plus strand signal of unique reads) 105.7 MB
ENCFF423NOE.fastq fastq (reads) 2.4 GB
ENCFF433GRL.bam bam (transcriptome alignments) 5.3 GB
ENCFF434IJK.bam bam (alignments) 3.5 GB
ENCFF437UWT.bigWig bigWig (minus strand signal of all reads) 104.2 MB
ENCFF455STN.bigWig bigWig (minus strand signal of all reads) 119.5 MB
ENCFF458HWE.bigWig bigWig (plus strand signal of all reads) 103.7 MB
ENCFF461SVG.bam bam (transcriptome alignments) 7.6 GB
ENCFF470LSH.tsv tsv (transcript quantifications) 27.5 MB
ENCFF483YCL.bam bam (alignments) 4.3 GB
ENCFF488OZF.bigWig bigWig (minus strand signal of all reads) 101.5 MB
ENCFF531XNH.bigWig bigWig (plus strand signal of unique reads) 101.9 MB
ENCFF540PCW.tsv tsv (transcript quantifications) 27.4 MB
ENCFF550PUG.bam bam (transcriptome alignments) 6.6 GB
ENCFF567SWA.bigWig bigWig (minus strand signal of all reads) 108.2 MB
ENCFF569CIQ.bigWig bigWig (minus strand signal of unique reads) 90.7 MB
ENCFF587DCA.tsv tsv (gene quantifications) 9.1 MB
ENCFF600PLR.bigWig bigWig (plus strand signal of all reads) 107.0 MB
ENCFF600VXW.bigWig bigWig (minus strand signal of unique reads) 103.2 MB
ENCFF608ZWO.bam bam (alignments) 4.2 GB
ENCFF694ECW.bigWig bigWig (minus strand signal of unique reads) 103.6 MB
ENCFF694MMB.bigWig bigWig (plus strand signal of unique reads) 106.5 MB
ENCFF704MDH.fastq fastq (reads) 2.9 GB
ENCFF726CQD.bam bam (alignments) 4.4 GB
ENCFF726DPV.tsv tsv (differential expression quantifications) 1.8 MB
ENCFF734DJP.tsv tsv (gene quantifications) 9.5 MB
ENCFF751IEM.tsv tsv (transcript quantifications) 24.9 MB
ENCFF754LSJ.bam bam (alignments) 4.4 GB
ENCFF761WMV.fastq fastq (reads) 2.4 GB
ENCFF788HMQ.bam bam (alignments) 4.2 GB
ENCFF790WFN.bigWig bigWig (plus strand signal of unique reads) 100.7 MB
ENCFF803DKZ.bam bam (alignments) 3.5 GB
ENCFF811WWX.bigWig bigWig (plus strand signal of all reads) 103.7 MB
ENCFF831ZDX.bigWig bigWig (plus strand signal of unique reads) 86.9 MB
ENCFF859GYI.bam bam (transcriptome alignments) 6.6 GB
ENCFF893NPO.bigWig bigWig (minus strand signal of all reads) 102.5 MB
ENCFF895QYB.bigWig bigWig (minus strand signal of all reads) 92.4 MB
ENCFF913RFE.bigWig bigWig (plus strand signal of all reads) 93.6 MB
ENCFF916VPR.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF932BKJ.bam bam (alignments) 5.2 GB
ENCFF932FKM.bam bam (alignments) 5.3 GB
ENCFF991UXL.bigWig bigWig (plus strand signal of all reads) 110.0 MB
ENCFF993CNL.bigWig bigWig (minus strand signal of all reads) 93.0 MB
ENCFF993EQA.bigWig bigWig (plus strand signal of all reads) 106.0 MB
ENCSR637HFY ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) pulldown experiment against RBM41

13 data files
FileTypeSize
ENCFF051YRS.tsv tsv (enrichment) 41.0 KB
ENCFF139WJC.tsv tsv (enrichment) 168.1 KB
ENCFF143JJC.fastq fastq (reads) 555.3 MB
ENCFF179YRS.tsv tsv (library fraction) 15.6 KB
ENCFF239QYS.tsv tsv (library fraction) 265.0 KB
ENCFF388UFE.tsv tsv (enrichment) 10.0 KB
ENCFF446PHG.tsv tsv (enrichment) 688.2 KB
ENCFF550YXW.fastq fastq (reads) 572.6 MB
ENCFF590PBM.fastq fastq (reads) 497.4 MB
ENCFF644BBX.fastq fastq (reads) 517.7 MB
ENCFF658PGT.fastq fastq (reads) 519.8 MB
ENCFF808IXT.tsv tsv (library fraction) 1.1 MB
ENCFF851WUY.tsv tsv (library fraction) 64.5 KB
ENCSR183AXJ ENCSR · via encode_api

HNRNPUL1 ChIP-seq in HepG2

Homo sapiens

64 data files
FileTypeSize
ENCFF041EMG.bed bed (peaks and background as input for IDR) 5.4 MB
ENCFF066YCU.bigBed bigBed (IDR thresholded peaks) 181.3 KB
ENCFF110WTS.bam bam (alignments) 530.3 MB
ENCFF124GJR.bigBed bigBed (peaks and background as input for IDR) 12.7 MB
ENCFF124POL.bigBed bigBed (peaks and background as input for IDR) 12.7 MB
ENCFF132TKJ.bigWig bigWig (fold change over control) 311.2 MB
ENCFF135FEK.bam bam (unfiltered alignments) 1.2 GB
ENCFF149ZXM.bed bed (IDR thresholded peaks) 27.5 KB
ENCFF150IKP.bigBed bigBed (optimal IDR thresholded peaks) 184.6 KB
ENCFF196ENM.bam bam (unfiltered alignments) 1.0 GB
ENCFF197SIT.bed bed (IDR thresholded peaks) 37.5 KB
ENCFF208AKV.bigBed bigBed (peaks and background as input for IDR) 12.6 MB
ENCFF208HRC.bigWig bigWig (signal p-value) 408.8 MB
ENCFF229FTN.bed bed (peaks and background as input for IDR) 5.6 MB
ENCFF241UXB.bigWig bigWig (signal p-value) 824.5 MB
ENCFF268OSL.bigWig bigWig (signal p-value) 894.4 MB
ENCFF291YKJ.bam bam (alignments) 536.2 MB
ENCFF302XPB.bigWig bigWig (fold change over control) 469.5 MB
ENCFF303UYX.bigBed bigBed (peaks and background as input for IDR) 12.7 MB
ENCFF323QVV.bed bed (conservative IDR thresholded peaks) 61.4 KB
ENCFF340HOC.bam bam (unfiltered alignments) 1.2 GB
ENCFF342DKX.bigWig bigWig (fold change over control) 327.3 MB
ENCFF349MFA.bed bed (IDR thresholded peaks) 64.3 KB
ENCFF373QRK.bed bed (conservative IDR thresholded peaks) 54.0 KB
ENCFF381RHU.bigBed bigBed (peaks and background as input for IDR) 12.6 MB
ENCFF385YWH.bigWig bigWig (signal p-value) 474.0 MB
ENCFF456VQO.bed bed (peaks and background as input for IDR) 5.4 MB
ENCFF465YGW.bigWig bigWig (fold change over control) 505.9 MB
ENCFF467WJQ.bigWig bigWig (signal p-value) 718.4 MB
ENCFF478RXX.bam bam (alignments) 624.2 MB
ENCFF486XKD.bigBed bigBed (IDR thresholded peaks) 97.5 KB
ENCFF496MCE.bed bed (conservative IDR thresholded peaks) 54.9 KB
ENCFF502ZPM.bigWig bigWig (signal p-value) 714.0 MB
ENCFF509YFF.bed bed (optimal IDR thresholded peaks) 65.6 KB
ENCFF525RRE.fastq fastq (reads) 984.0 MB
ENCFF548PAU.bed bed (IDR ranked peaks) 4.1 MB
ENCFF552CYY.bigBed bigBed (conservative IDR thresholded peaks) 163.4 KB
ENCFF552YXX.bam bam (alignments) 632.2 MB
ENCFF553FJA.bigBed bigBed (conservative IDR thresholded peaks) 176.8 KB
ENCFF557UCL.bam bam (unfiltered alignments) 1.0 GB
ENCFF560CMG.bed bed (optimal IDR thresholded peaks) 65.1 KB
ENCFF576KYT.bed bed (peaks and background as input for IDR) 6.6 MB
ENCFF587UIU.bigWig bigWig (signal p-value) 482.0 MB
ENCFF645HHQ.bigWig bigWig (signal p-value) 835.6 MB
ENCFF646NML.bigWig bigWig (fold change over control) 387.0 MB
ENCFF679PLD.bed bed (IDR ranked peaks) 3.4 MB
ENCFF680RHF.bigWig bigWig (fold change over control) 783.5 MB
ENCFF686ZBE.bigBed bigBed (peaks and background as input for IDR) 12.6 MB
ENCFF693BHL.bigBed bigBed (optimal IDR thresholded peaks) 183.0 KB
ENCFF693ECZ.fastq fastq (reads) 827.6 MB
ENCFF699MFO.bam bam (alignments) 530.8 MB
ENCFF723ZOT.bed bed (IDR ranked peaks) 2.2 MB
ENCFF725ECP.bigWig bigWig (signal p-value) 429.9 MB
ENCFF743FUC.bed bed (IDR ranked peaks) 4.1 MB
ENCFF746NGR.bam bam (unfiltered alignments) 1.0 GB
ENCFF828AUG.bam bam (unfiltered alignments) 1.2 GB
ENCFF838ZPY.bed bed (peaks and background as input for IDR) 5.5 MB
ENCFF843YFX.bigBed bigBed (conservative IDR thresholded peaks) 166.4 KB
ENCFF884GRP.bigBed bigBed (IDR thresholded peaks) 112.4 KB
ENCFF900BXN.bigWig bigWig (fold change over control) 374.8 MB
ENCFF945HYM.bigWig bigWig (fold change over control) 768.4 MB
ENCFF946JBN.bed bed (peaks and background as input for IDR) 6.6 MB
ENCFF983NVY.bigWig bigWig (fold change over control) 811.8 MB
ENCFF987JXY.bam bam (alignments) 624.8 MB
ENCSR346IHS ENCSR · via encode_api

eCLIP control experiment on K562 against PPIL4

Homo sapiens

8 data files
FileTypeSize
ENCFF027EPH.bigWig bigWig (minus strand signal of unique reads) 12.3 MB
ENCFF051QKU.bigWig bigWig (plus strand signal of unique reads) 12.5 MB
ENCFF096VVP.bigWig bigWig (minus strand signal of unique reads) 12.1 MB
ENCFF221USS.fastq fastq (reads) 450.9 MB
ENCFF296UEW.bam bam (alignments) 246.9 MB
ENCFF459RGB.bam bam (alignments) 251.3 MB
ENCFF674WSW.bigWig bigWig (plus strand signal of unique reads) 12.8 MB
ENCFF932XAN.fastq fastq (reads) 448.1 MB
ENCSR679NKE ENCSR · via encode_api

eCLIP control experiment on K562 against LARP4

Homo sapiens

8 data files
FileTypeSize
ENCFF171EBM.bigWig bigWig (plus strand signal of unique reads) 21.7 MB
ENCFF246ZNB.fastq fastq (reads) 545.2 MB
ENCFF305KSU.bigWig bigWig (minus strand signal of unique reads) 21.1 MB
ENCFF586LZV.fastq fastq (reads) 517.3 MB
ENCFF729JDN.bigWig bigWig (plus strand signal of unique reads) 22.3 MB
ENCFF776GPK.bam bam (alignments) 441.3 MB
ENCFF795SCL.bigWig bigWig (minus strand signal of unique reads) 21.6 MB
ENCFF848GHI.bam bam (alignments) 451.2 MB
ENCSR696MBC ENCSR · via encode_api

SRSF4 ChIP-seq on HepG2

Homo sapiens

64 data files
FileTypeSize
ENCFF033TCS.bam bam (unfiltered alignments) 1.4 GB
ENCFF036THF.bigWig bigWig (signal p-value) 954.9 MB
ENCFF043VFZ.bigWig bigWig (fold change over control) 310.8 MB
ENCFF057BGI.bigWig bigWig (fold change over control) 428.6 MB
ENCFF065PVM.bam bam (alignments) 572.3 MB
ENCFF077WTU.bigBed bigBed (optimal IDR thresholded peaks) 179.6 KB
ENCFF083OZJ.bed bed (conservative IDR thresholded peaks) 45.5 KB
ENCFF087PSM.bigBed bigBed (peaks and background as input for IDR) 12.6 MB
ENCFF109EVY.bed bed (IDR thresholded peaks) 18.6 KB
ENCFF122FVR.bed bed (optimal IDR thresholded peaks) 46.2 KB
ENCFF123VBF.bigWig bigWig (fold change over control) 753.4 MB
ENCFF141AQU.bed bed (IDR thresholded peaks) 44.1 KB
ENCFF175CSR.bed bed (IDR ranked peaks) 2.1 MB
ENCFF214BMQ.bed bed (peaks and background as input for IDR) 5.1 MB
ENCFF216SKQ.bam bam (alignments) 450.9 MB
ENCFF245FGW.bigWig bigWig (signal p-value) 768.3 MB
ENCFF248GRD.bed bed (conservative IDR thresholded peaks) 44.2 KB
ENCFF252YKZ.bigWig bigWig (fold change over control) 770.1 MB
ENCFF261EUY.bam bam (alignments) 592.7 MB
ENCFF283NHB.bigWig bigWig (signal p-value) 783.1 MB
ENCFF289ODL.bigBed bigBed (peaks and background as input for IDR) 12.6 MB
ENCFF302RLS.bigWig bigWig (signal p-value) 944.0 MB
ENCFF312LNY.bigWig bigWig (fold change over control) 311.2 MB
ENCFF333MQR.bed bed (IDR thresholded peaks) 20.3 KB
ENCFF364HBV.bigWig bigWig (fold change over control) 359.2 MB
ENCFF369VLT.bam bam (alignments) 572.9 MB
ENCFF376DRK.bed bed (IDR ranked peaks) 4.0 MB
ENCFF378SYI.bam bam (unfiltered alignments) 1.5 GB
ENCFF396CRB.bed bed (peaks and background as input for IDR) 5.4 MB
ENCFF419BKM.bigBed bigBed (peaks and background as input for IDR) 12.6 MB
ENCFF427GBB.bed bed (conservative IDR thresholded peaks) 47.4 KB
ENCFF447XLZ.bam bam (unfiltered alignments) 1.4 GB
ENCFF454GJX.bigBed bigBed (IDR thresholded peaks) 114.9 KB
ENCFF466DOW.fastq fastq (reads) 1.2 GB
ENCFF470RQS.bed bed (IDR ranked peaks) 4.0 MB
ENCFF475QGL.bam bam (unfiltered alignments) 1.5 GB
ENCFF479TZM.bed bed (optimal IDR thresholded peaks) 46.9 KB
ENCFF524OFZ.bigBed bigBed (conservative IDR thresholded peaks) 175.4 KB
ENCFF539AEF.bam bam (alignments) 467.9 MB
ENCFF553DKF.bed bed (peaks and background as input for IDR) 5.5 MB
ENCFF573KGI.bigWig bigWig (signal p-value) 539.0 MB
ENCFF580PBS.bigBed bigBed (peaks and background as input for IDR) 12.5 MB
ENCFF593CLP.bigBed bigBed (optimal IDR thresholded peaks) 180.8 KB
ENCFF594WUR.bam bam (unfiltered alignments) 1.4 GB
ENCFF610QEZ.bigWig bigWig (signal p-value) 521.6 MB
ENCFF623PNB.bigBed bigBed (conservative IDR thresholded peaks) 176.3 KB
ENCFF633ZQY.bigWig bigWig (fold change over control) 509.0 MB
ENCFF654YMV.bam bam (alignments) 451.5 MB
ENCFF657EZC.bed bed (peaks and background as input for IDR) 6.5 MB
ENCFF672BBS.bigWig bigWig (signal p-value) 498.6 MB
ENCFF694EXT.bigWig bigWig (fold change over control) 750.8 MB
ENCFF715ION.bam bam (unfiltered alignments) 1.5 GB
ENCFF776APR.bed bed (IDR ranked peaks) 1.6 MB
ENCFF778BCW.bed bed (peaks and background as input for IDR) 5.4 MB
ENCFF778DDJ.bed bed (peaks and background as input for IDR) 6.5 MB
ENCFF795NYL.bigBed bigBed (peaks and background as input for IDR) 12.6 MB
ENCFF825JIX.bigBed bigBed (IDR thresholded peaks) 175.1 KB
ENCFF842CAT.bigBed bigBed (IDR thresholded peaks) 119.8 KB
ENCFF864QEG.bigWig bigWig (signal p-value) 535.9 MB
ENCFF925HJA.bigWig bigWig (signal p-value) 956.2 MB
ENCFF957XPO.bigWig bigWig (fold change over control) 356.6 MB
ENCFF958PYB.bigBed bigBed (conservative IDR thresholded peaks) 181.9 KB
ENCFF974UHY.bigBed bigBed (peaks and background as input for IDR) 12.5 MB
ENCFF975GAK.fastq fastq (reads) 1.3 GB
ENCSR377BLZ ENCSR · via encode_api

GTF2F1 ChIP-seq in K562

Homo sapiens

66 data files
FileTypeSize
ENCFF006IGE.bed bed (IDR ranked peaks) 1.8 MB
ENCFF007SLK.bed bed (peaks and background as input for IDR) 5.3 MB
ENCFF017HJV.fastq fastq (reads) 381.2 MB
ENCFF044MLU.bam bam (alignments) 429.4 MB
ENCFF048FZJ.bam bam (unfiltered alignments) 1.2 GB
ENCFF072ENG.bam bam (unfiltered alignments) 1.5 GB
ENCFF084UEX.bigBed bigBed (peaks and background as input for IDR) 12.3 MB
ENCFF087KCE.bigWig bigWig (signal p-value) 481.7 MB
ENCFF095CXR.bigWig bigWig (signal p-value) 477.1 MB
ENCFF160QWL.bed bed (conservative IDR thresholded peaks) 240.7 KB
ENCFF170CBW.bigWig bigWig (signal p-value) 424.1 MB
ENCFF174VAD.bed bed (peaks and background as input for IDR) 5.1 MB
ENCFF220GUZ.bed bed (peaks and background as input for IDR) 6.3 MB
ENCFF225ZPU.bed bed (IDR thresholded peaks) 256.9 KB
ENCFF236WUX.bigBed bigBed (conservative IDR thresholded peaks) 537.2 KB
ENCFF246VJH.bed bed (optimal IDR thresholded peaks) 257.5 KB
ENCFF274KTZ.bigBed bigBed (IDR thresholded peaks) 304.4 KB
ENCFF293JVM.bed bed (IDR thresholded peaks) 146.2 KB
ENCFF306IYE.bigBed bigBed (peaks and background as input for IDR) 12.4 MB
ENCFF349KZR.bigBed bigBed (conservative IDR thresholded peaks) 541.2 KB
ENCFF353XLY.bam bam (alignments) 391.6 MB
ENCFF362NCG.bed bed (conservative IDR thresholded peaks) 245.0 KB
ENCFF420JKU.bed bed (IDR ranked peaks) 4.4 MB
ENCFF436CSN.bigWig bigWig (fold change over control) 706.3 MB
ENCFF449AHL.bed bed (conservative IDR thresholded peaks) 240.8 KB
ENCFF451DOD.bam bam (unfiltered alignments) 1.6 GB
ENCFF452LYW.bigBed bigBed (optimal IDR thresholded peaks) 563.6 KB
ENCFF487RXG.bigWig bigWig (fold change over control) 701.1 MB
ENCFF498CHM.bed bed (peaks and background as input for IDR) 5.2 MB
ENCFF501ZHS.bigBed bigBed (optimal IDR thresholded peaks) 574.1 KB
ENCFF532HDA.bigWig bigWig (fold change over control) 407.8 MB
ENCFF559OHC.bed bed (peaks and background as input for IDR) 6.3 MB
ENCFF560EAV.bigWig bigWig (signal p-value) 874.2 MB
ENCFF568WKA.bigWig bigWig (fold change over control) 293.9 MB
ENCFF575ZZC.fastq fastq (reads) 841.7 MB
ENCFF583UDD.bed bed (peaks and background as input for IDR) 5.1 MB
ENCFF591HBQ.bigWig bigWig (signal p-value) 805.2 MB
ENCFF637QZJ.bigWig bigWig (signal p-value) 550.0 MB
ENCFF672KFS.bigBed bigBed (IDR thresholded peaks) 261.2 KB
ENCFF688VZP.bigWig bigWig (signal p-value) 970.0 MB
ENCFF701MHQ.bam bam (unfiltered alignments) 1.2 GB
ENCFF722UZR.bigBed bigBed (peaks and background as input for IDR) 12.6 MB
ENCFF726TYX.bed bed (IDR ranked peaks) 4.0 MB
ENCFF728FXU.bigWig bigWig (fold change over control) 310.6 MB
ENCFF736OTF.bigWig bigWig (fold change over control) 292.1 MB
ENCFF738JFV.bed bed (IDR ranked peaks) 2.7 MB
ENCFF801REC.bigBed bigBed (peaks and background as input for IDR) 12.5 MB
ENCFF810LZY.bigBed bigBed (peaks and background as input for IDR) 12.6 MB
ENCFF816FYO.bam bam (alignments) 408.9 MB
ENCFF816TGI.bigWig bigWig (signal p-value) 870.3 MB
ENCFF831HME.bam bam (unfiltered alignments) 1.1 GB
ENCFF843UHP.bed bed (optimal IDR thresholded peaks) 262.9 KB
ENCFF850YGV.bigBed bigBed (conservative IDR thresholded peaks) 546.8 KB
ENCFF869HDT.bam bam (alignments) 460.4 MB
ENCFF891ODG.fastq fastq (reads) 1.2 GB
ENCFF922DRF.bam bam (alignments) 428.8 MB
ENCFF925RGZ.bigWig bigWig (fold change over control) 449.4 MB
ENCFF932SAK.bigWig bigWig (signal p-value) 707.5 MB
ENCFF940JZP.bigBed bigBed (IDR thresholded peaks) 563.5 KB
ENCFF941PUJ.fastq fastq (reads) 372.8 MB
ENCFF951FOV.bigWig bigWig (fold change over control) 722.1 MB
ENCFF956OKI.bigWig bigWig (fold change over control) 318.7 MB
ENCFF961LDM.bam bam (unfiltered alignments) 1.6 GB
ENCFF978UGE.bam bam (alignments) 391.0 MB
ENCFF983IEF.bigBed bigBed (peaks and background as input for IDR) 12.5 MB
ENCFF984MCV.bed bed (IDR thresholded peaks) 113.4 KB
ENCSR051DXE ENCSR · via encode_api

FUS ChIP-seq in K562

Homo sapiens

64 data files
FileTypeSize
ENCFF040PFJ.bigBed bigBed (IDR thresholded peaks) 151.9 KB
ENCFF049NDY.bigBed bigBed (optimal IDR thresholded peaks) 151.4 KB
ENCFF059LDJ.bam bam (unfiltered alignments) 594.9 MB
ENCFF090LHF.bigBed bigBed (optimal IDR thresholded peaks) 151.9 KB
ENCFF096NHL.bed bed (IDR ranked peaks) 2.9 MB
ENCFF103YUM.bigWig bigWig (fold change over control) 287.2 MB
ENCFF128WPZ.bigWig bigWig (signal p-value) 480.6 MB
ENCFF129RMB.bigWig bigWig (signal p-value) 824.7 MB
ENCFF135WSQ.bigBed bigBed (peaks and background as input for IDR) 12.7 MB
ENCFF137NMV.bed bed (conservative IDR thresholded peaks) 42.7 KB
ENCFF142CPK.bed bed (optimal IDR thresholded peaks) 50.4 KB
ENCFF188YBS.bam bam (unfiltered alignments) 579.1 MB
ENCFF192IFJ.bed bed (peaks and background as input for IDR) 6.1 MB
ENCFF193ODS.bigWig bigWig (fold change over control) 272.6 MB
ENCFF236BBT.bigBed bigBed (IDR thresholded peaks) 88.9 KB
ENCFF241PLE.bigBed bigBed (peaks and background as input for IDR) 12.5 MB
ENCFF262DPM.bed bed (peaks and background as input for IDR) 4.9 MB
ENCFF274GZP.bed bed (peaks and background as input for IDR) 4.8 MB
ENCFF281BEN.bigWig bigWig (signal p-value) 431.5 MB
ENCFF313ZXN.bigWig bigWig (fold change over control) 405.5 MB
ENCFF338REW.bigBed bigBed (peaks and background as input for IDR) 12.6 MB
ENCFF361MTW.bam bam (alignments) 417.3 MB
ENCFF380ABG.bigWig bigWig (fold change over control) 668.1 MB
ENCFF380FXL.bigBed bigBed (IDR thresholded peaks) 89.3 KB
ENCFF386BEF.bed bed (IDR thresholded peaks) 16.2 KB
ENCFF389HBW.bigWig bigWig (signal p-value) 443.3 MB
ENCFF399MLN.bigBed bigBed (conservative IDR thresholded peaks) 144.4 KB
ENCFF401LGY.bigBed bigBed (conservative IDR thresholded peaks) 152.9 KB
ENCFF414GZH.bigWig bigWig (fold change over control) 678.8 MB
ENCFF442XTQ.bed bed (peaks and background as input for IDR) 6.0 MB
ENCFF460PVE.bed bed (IDR thresholded peaks) 16.1 KB
ENCFF470RGJ.bigBed bigBed (peaks and background as input for IDR) 12.8 MB
ENCFF477LOD.bam bam (unfiltered alignments) 587.3 MB
ENCFF486ZEG.bed bed (IDR ranked peaks) 1.0 MB
ENCFF495FUA.bigBed bigBed (peaks and background as input for IDR) 12.6 MB
ENCFF500ARI.bed bed (conservative IDR thresholded peaks) 45.8 KB
ENCFF503JQK.bam bam (alignments) 428.3 MB
ENCFF516VRQ.bigBed bigBed (conservative IDR thresholded peaks) 137.5 KB
ENCFF530LEM.bed bed (peaks and background as input for IDR) 5.0 MB
ENCFF539TYQ.bed bed (IDR ranked peaks) 2.9 MB
ENCFF548LHE.bed bed (IDR ranked peaks) 1.1 MB
ENCFF552PTK.bed bed (IDR thresholded peaks) 50.8 KB
ENCFF581FRT.bigWig bigWig (fold change over control) 404.9 MB
ENCFF581MLB.bed bed (conservative IDR thresholded peaks) 51.3 KB
ENCFF586AEL.bam bam (unfiltered alignments) 576.7 MB
ENCFF589BOI.bigWig bigWig (fold change over control) 671.7 MB
ENCFF598JTE.bigWig bigWig (signal p-value) 448.1 MB
ENCFF607GQA.bam bam (unfiltered alignments) 569.5 MB
ENCFF635OPE.bigWig bigWig (fold change over control) 292.6 MB
ENCFF644TNS.bed bed (peaks and background as input for IDR) 4.9 MB
ENCFF688ARM.bed bed (optimal IDR thresholded peaks) 49.9 KB
ENCFF731MIV.bigWig bigWig (signal p-value) 748.8 MB
ENCFF759PVZ.bam bam (alignments) 428.8 MB
ENCFF761OEF.bigWig bigWig (signal p-value) 812.3 MB
ENCFF761RTS.fastq fastq (reads) 425.4 MB
ENCFF775PYP.bigWig bigWig (fold change over control) 269.5 MB
ENCFF782EKH.bigBed bigBed (peaks and background as input for IDR) 12.5 MB
ENCFF784SYN.bam bam (alignments) 439.5 MB
ENCFF784TAM.bigWig bigWig (signal p-value) 804.5 MB
ENCFF826ECD.bam bam (unfiltered alignments) 597.4 MB
ENCFF866KYF.bigWig bigWig (signal p-value) 811.7 MB
ENCFF910EVL.bam bam (alignments) 428.4 MB
ENCFF958RAN.bam bam (alignments) 417.8 MB
ENCFF970NLP.fastq fastq (reads) 411.6 MB
ENCSR506KWJ ENCSR · via encode_api

XRCC5 ChIP-seq in K562

Homo sapiens

64 data files
FileTypeSize
ENCFF031WEU.bed bed (peaks and background as input for IDR) 6.7 MB
ENCFF061HGG.bigWig bigWig (fold change over control) 739.2 MB
ENCFF083DAL.bigBed bigBed (conservative IDR thresholded peaks) 366.9 KB
ENCFF095TJV.bigWig bigWig (fold change over control) 1.1 GB
ENCFF099SPM.bam bam (unfiltered alignments) 1.6 GB
ENCFF104ZCC.bigWig bigWig (fold change over control) 621.7 MB
ENCFF115CTZ.bigBed bigBed (IDR thresholded peaks) 380.0 KB
ENCFF117ZVV.bigWig bigWig (signal p-value) 1.1 GB
ENCFF149RRS.bigBed bigBed (peaks and background as input for IDR) 12.5 MB
ENCFF150EBS.bed bed (IDR ranked peaks) 4.9 MB
ENCFF169KFN.bam bam (unfiltered alignments) 1.3 GB
ENCFF204OIP.bed bed (conservative IDR thresholded peaks) 193.2 KB
ENCFF232PSU.bam bam (alignments) 834.9 MB
ENCFF245CYX.bed bed (peaks and background as input for IDR) 6.8 MB
ENCFF250ASK.bam bam (unfiltered alignments) 1.3 GB
ENCFF252GWY.bigWig bigWig (signal p-value) 1.3 GB
ENCFF260MMT.bigBed bigBed (peaks and background as input for IDR) 12.5 MB
ENCFF281SDB.bam bam (alignments) 668.3 MB
ENCFF285YMS.bigBed bigBed (peaks and background as input for IDR) 12.3 MB
ENCFF339AMV.bigBed bigBed (IDR thresholded peaks) 228.2 KB
ENCFF365IOS.bigWig bigWig (signal p-value) 823.7 MB
ENCFF391QGO.bam bam (unfiltered alignments) 1.6 GB
ENCFF447MQY.bigWig bigWig (fold change over control) 486.0 MB
ENCFF473MPG.bed bed (IDR ranked peaks) 5.2 MB
ENCFF478LCE.bigWig bigWig (signal p-value) 964.2 MB
ENCFF485VXK.bam bam (unfiltered alignments) 1.3 GB
ENCFF515TGR.bam bam (unfiltered alignments) 1.6 GB
ENCFF533FCA.bigWig bigWig (fold change over control) 552.0 MB
ENCFF539TVP.fastq fastq (reads) 958.9 MB
ENCFF544EVA.bigWig bigWig (fold change over control) 1.0 GB
ENCFF575CPG.bed bed (peaks and background as input for IDR) 6.0 MB
ENCFF618QKD.bigWig bigWig (signal p-value) 719.5 MB
ENCFF659FZC.bam bam (alignments) 762.2 MB
ENCFF667KBF.bam bam (alignments) 835.2 MB
ENCFF669MZD.bam bam (alignments) 611.0 MB
ENCFF675JSN.bigWig bigWig (signal p-value) 1002.7 MB
ENCFF704NMU.bed bed (conservative IDR thresholded peaks) 182.8 KB
ENCFF708IYN.bed bed (IDR thresholded peaks) 204.6 KB
ENCFF720UBT.bed bed (peaks and background as input for IDR) 6.2 MB
ENCFF726OAO.bigBed bigBed (peaks and background as input for IDR) 12.4 MB
ENCFF733DNR.bed bed (peaks and background as input for IDR) 6.0 MB
ENCFF751CTB.bigWig bigWig (fold change over control) 531.9 MB
ENCFF753TWJ.bigWig bigWig (fold change over control) 1.1 GB
ENCFF755KRH.bed bed (peaks and background as input for IDR) 6.2 MB
ENCFF765MLB.bigBed bigBed (peaks and background as input for IDR) 12.4 MB
ENCFF794NCK.bigBed bigBed (conservative IDR thresholded peaks) 350.3 KB
ENCFF828QYP.bigBed bigBed (optimal IDR thresholded peaks) 402.4 KB
ENCFF829CSZ.bigBed bigBed (conservative IDR thresholded peaks) 335.9 KB
ENCFF836ZRP.bed bed (IDR ranked peaks) 4.1 MB
ENCFF853RUB.bed bed (IDR ranked peaks) 3.6 MB
ENCFF862OVS.bed bed (IDR thresholded peaks) 107.5 KB
ENCFF910TTX.bigWig bigWig (signal p-value) 722.7 MB
ENCFF913AXA.bigBed bigBed (IDR thresholded peaks) 240.5 KB
ENCFF915GSL.bed bed (IDR thresholded peaks) 99.6 KB
ENCFF920FBS.bed bed (conservative IDR thresholded peaks) 171.1 KB
ENCFF925UZZ.fastq fastq (reads) 1.1 GB
ENCFF928GGP.bigWig bigWig (signal p-value) 817.4 MB
ENCFF928QCD.bigBed bigBed (optimal IDR thresholded peaks) 371.3 KB
ENCFF929NEA.bigWig bigWig (signal p-value) 1.3 GB
ENCFF929TWP.bed bed (optimal IDR thresholded peaks) 219.6 KB
ENCFF982OSU.bigWig bigWig (fold change over control) 485.4 MB
ENCFF991WOD.bam bam (alignments) 667.9 MB
ENCFF996YMS.bigBed bigBed (peaks and background as input for IDR) 12.3 MB
ENCFF998KKJ.bed bed (optimal IDR thresholded peaks) 197.3 KB
ENCSR145CXH ENCSR · via encode_api

TARDBP ChIP-seq in HepG2

Homo sapiens

64 data files
FileTypeSize
ENCFF003MYQ.bigBed bigBed (IDR thresholded peaks) 92.3 KB
ENCFF013XEG.bam bam (alignments) 967.1 MB
ENCFF015SQW.bigWig bigWig (signal p-value) 540.9 MB
ENCFF030PTI.bigWig bigWig (fold change over control) 1.0 GB
ENCFF038UZR.bed bed (IDR ranked peaks) 3.1 MB
ENCFF040PMB.bam bam (alignments) 900.7 MB
ENCFF132LKJ.bigBed bigBed (IDR thresholded peaks) 285.8 KB
ENCFF135XJA.bam bam (alignments) 967.8 MB
ENCFF159FEG.bigWig bigWig (fold change over control) 1023.6 MB
ENCFF186BDX.bigBed bigBed (conservative IDR thresholded peaks) 243.4 KB
ENCFF195BFL.bigWig bigWig (signal p-value) 466.6 MB
ENCFF201YVV.bigBed bigBed (conservative IDR thresholded peaks) 208.1 KB
ENCFF202CQD.bigWig bigWig (fold change over control) 684.1 MB
ENCFF207TNB.bigBed bigBed (conservative IDR thresholded peaks) 201.7 KB
ENCFF209TPJ.bigBed bigBed (peaks and background as input for IDR) 12.9 MB
ENCFF228ZAA.bigWig bigWig (fold change over control) 488.0 MB
ENCFF238IPF.bigBed bigBed (peaks and background as input for IDR) 12.9 MB
ENCFF263BQX.bigBed bigBed (optimal IDR thresholded peaks) 279.4 KB
ENCFF276MQU.bigWig bigWig (signal p-value) 770.4 MB
ENCFF292XSQ.bed bed (IDR thresholded peaks) 132.1 KB
ENCFF295WAN.fastq fastq (reads) 1.1 GB
ENCFF298NCV.bigBed bigBed (IDR thresholded peaks) 240.0 KB
ENCFF307YZB.bed bed (conservative IDR thresholded peaks) 81.1 KB
ENCFF310NYX.bam bam (unfiltered alignments) 1.4 GB
ENCFF335IUS.bigWig bigWig (signal p-value) 602.1 MB
ENCFF340BEE.bam bam (alignments) 929.1 MB
ENCFF386XFP.bigWig bigWig (fold change over control) 463.6 MB
ENCFF437LRF.bigWig bigWig (signal p-value) 1.0 GB
ENCFF460ADX.bigBed bigBed (peaks and background as input for IDR) 12.8 MB
ENCFF462LKA.bam bam (alignments) 901.5 MB
ENCFF470CIC.bigWig bigWig (fold change over control) 1.0 GB
ENCFF492UFK.bed bed (IDR ranked peaks) 3.5 MB
ENCFF497HAZ.bam bam (unfiltered alignments) 1.5 GB
ENCFF502DYQ.bigWig bigWig (signal p-value) 630.2 MB
ENCFF504FXG.bam bam (unfiltered alignments) 1.5 GB
ENCFF509ZOA.bed bed (peaks and background as input for IDR) 5.2 MB
ENCFF510CFC.bam bam (alignments) 1000.0 MB
ENCFF518JPO.bed bed (peaks and background as input for IDR) 5.4 MB
ENCFF530LSA.bed bed (optimal IDR thresholded peaks) 128.1 KB
ENCFF563CTU.bed bed (IDR thresholded peaks) 103.3 KB
ENCFF583DMX.bigBed bigBed (peaks and background as input for IDR) 12.8 MB
ENCFF602FNL.bam bam (unfiltered alignments) 1.4 GB
ENCFF609NMG.bigBed bigBed (optimal IDR thresholded peaks) 286.8 KB
ENCFF625LUF.bed bed (peaks and background as input for IDR) 6.6 MB
ENCFF640MOW.bed bed (peaks and background as input for IDR) 5.2 MB
ENCFF643UPY.bigWig bigWig (signal p-value) 741.5 MB
ENCFF657QUD.bed bed (peaks and background as input for IDR) 5.5 MB
ENCFF679KAJ.bed bed (peaks and background as input for IDR) 6.6 MB
ENCFF680MDG.bed bed (IDR ranked peaks) 3.6 MB
ENCFF696QPP.bed bed (optimal IDR thresholded peaks) 132.2 KB
ENCFF731RRV.bigWig bigWig (fold change over control) 644.1 MB
ENCFF732ZVM.bam bam (unfiltered alignments) 1.4 GB
ENCFF773XGD.bigWig bigWig (signal p-value) 1.0 GB
ENCFF810WTC.bigWig bigWig (signal p-value) 925.3 MB
ENCFF832CQA.bigBed bigBed (peaks and background as input for IDR) 12.8 MB
ENCFF833EKY.bed bed (IDR ranked peaks) 2.5 MB
ENCFF841EUE.bed bed (IDR thresholded peaks) 24.5 KB
ENCFF843YBE.bed bed (conservative IDR thresholded peaks) 77.8 KB
ENCFF899PFX.bigBed bigBed (peaks and background as input for IDR) 12.8 MB
ENCFF920EQY.bigWig bigWig (fold change over control) 490.2 MB
ENCFF938JZW.bam bam (unfiltered alignments) 1.5 GB
ENCFF973PZM.bigWig bigWig (fold change over control) 465.1 MB
ENCFF978CQE.bed bed (conservative IDR thresholded peaks) 103.4 KB
ENCFF990WRZ.fastq fastq (reads) 1.1 GB
ENCSR555ZMV ENCSR · via encode_api

AGO1 ChIP-seq in HepG2

Homo sapiens

64 data files
FileTypeSize
ENCFF023GNG.bed bed (IDR ranked peaks) 5.9 MB
ENCFF026ZQQ.bigBed bigBed (IDR thresholded peaks) 304.4 KB
ENCFF033HNB.bam bam (unfiltered alignments) 1.5 GB
ENCFF042YRS.bigBed bigBed (optimal IDR thresholded peaks) 554.9 KB
ENCFF057TDA.bigBed bigBed (conservative IDR thresholded peaks) 535.5 KB
ENCFF060OSM.bigBed bigBed (peaks and background as input for IDR) 12.3 MB
ENCFF075OHW.bed bed (IDR thresholded peaks) 107.4 KB
ENCFF108LGL.bigBed bigBed (conservative IDR thresholded peaks) 514.3 KB
ENCFF111GOO.bigWig bigWig (signal p-value) 957.3 MB
ENCFF113OAS.bam bam (alignments) 402.5 MB
ENCFF125YYI.bigWig bigWig (fold change over control) 298.9 MB
ENCFF130JQD.bed bed (conservative IDR thresholded peaks) 231.3 KB
ENCFF154ELE.bed bed (IDR ranked peaks) 3.7 MB
ENCFF178YHB.bigWig bigWig (signal p-value) 843.9 MB
ENCFF187AOX.bam bam (unfiltered alignments) 1.9 GB
ENCFF194QRM.bigWig bigWig (fold change over control) 338.6 MB
ENCFF201MGZ.bigWig bigWig (signal p-value) 457.0 MB
ENCFF225YFT.bed bed (conservative IDR thresholded peaks) 219.0 KB
ENCFF248TKF.bed bed (IDR thresholded peaks) 109.8 KB
ENCFF267HPS.bam bam (alignments) 474.5 MB
ENCFF272GTS.bed bed (peaks and background as input for IDR) 5.9 MB
ENCFF277EOU.bigBed bigBed (IDR thresholded peaks) 537.5 KB
ENCFF337MTS.bigBed bigBed (peaks and background as input for IDR) 12.3 MB
ENCFF358CXO.bigBed bigBed (optimal IDR thresholded peaks) 550.4 KB
ENCFF377SDH.bed bed (conservative IDR thresholded peaks) 220.0 KB
ENCFF386BWC.bed bed (peaks and background as input for IDR) 5.8 MB
ENCFF417SJY.bam bam (alignments) 495.6 MB
ENCFF443ULD.bed bed (peaks and background as input for IDR) 5.8 MB
ENCFF469ZHD.bed bed (IDR ranked peaks) 5.9 MB
ENCFF485TBR.bigWig bigWig (signal p-value) 449.9 MB
ENCFF487FMG.fastq fastq (reads) 1.7 GB
ENCFF513HWB.bam bam (alignments) 422.8 MB
ENCFF541BCJ.bigWig bigWig (signal p-value) 553.7 MB
ENCFF546VPK.bed bed (peaks and background as input for IDR) 6.7 MB
ENCFF568WIH.bam bam (unfiltered alignments) 1.9 GB
ENCFF585EDM.fastq fastq (reads) 1.3 GB
ENCFF587FTV.bigWig bigWig (fold change over control) 732.2 MB
ENCFF608GON.bigWig bigWig (fold change over control) 731.5 MB
ENCFF626UDB.bigWig bigWig (fold change over control) 438.9 MB
ENCFF627BHP.bed bed (optimal IDR thresholded peaks) 238.7 KB
ENCFF639TOU.bed bed (optimal IDR thresholded peaks) 241.8 KB
ENCFF661JJB.bed bed (peaks and background as input for IDR) 6.7 MB
ENCFF665DDB.bigWig bigWig (fold change over control) 297.9 MB
ENCFF699ZZE.bigWig bigWig (fold change over control) 732.2 MB
ENCFF706WOC.bed bed (peaks and background as input for IDR) 5.8 MB
ENCFF729UZN.bigBed bigBed (peaks and background as input for IDR) 12.3 MB
ENCFF740QRC.bigWig bigWig (signal p-value) 784.8 MB
ENCFF755OKE.bam bam (alignments) 475.2 MB
ENCFF762CZC.bam bam (unfiltered alignments) 1.5 GB
ENCFF767SOD.bigBed bigBed (IDR thresholded peaks) 294.7 KB
ENCFF779VND.bigBed bigBed (peaks and background as input for IDR) 12.3 MB
ENCFF817THD.bigWig bigWig (fold change over control) 446.0 MB
ENCFF824EFD.bam bam (alignments) 401.9 MB
ENCFF845WGA.bam bam (unfiltered alignments) 1.5 GB
ENCFF848GOB.bed bed (IDR ranked peaks) 4.2 MB
ENCFF865CTX.bigBed bigBed (peaks and background as input for IDR) 12.2 MB
ENCFF866QQG.bigBed bigBed (conservative IDR thresholded peaks) 514.5 KB
ENCFF923DHF.bigWig bigWig (signal p-value) 420.3 MB
ENCFF926LZT.bigBed bigBed (peaks and background as input for IDR) 12.3 MB
ENCFF942FFT.bigWig bigWig (signal p-value) 826.2 MB
ENCFF952LSY.bed bed (IDR thresholded peaks) 233.4 KB
ENCFF992MCZ.bam bam (unfiltered alignments) 1.8 GB
ENCFF992ZAH.bigWig bigWig (fold change over control) 336.9 MB
ENCFF997LCP.bigWig bigWig (signal p-value) 716.2 MB
ENCSR315JJE ENCSR · via encode_api

HNRNPL ChIP-seq in HepG2

Homo sapiens

64 data files
FileTypeSize
ENCFF036FCE.bed bed (IDR thresholded peaks) 126.8 KB
ENCFF039CUI.bed bed (optimal IDR thresholded peaks) 405.2 KB
ENCFF057AGU.bed bed (IDR ranked peaks) 4.8 MB
ENCFF074MUO.bigBed bigBed (peaks and background as input for IDR) 12.5 MB
ENCFF081JMB.bam bam (alignments) 455.3 MB
ENCFF086QIU.bigWig bigWig (signal p-value) 439.5 MB
ENCFF146SND.bam bam (alignments) 454.6 MB
ENCFF147KNG.bigBed bigBed (peaks and background as input for IDR) 12.4 MB
ENCFF158VHL.bed bed (peaks and background as input for IDR) 5.2 MB
ENCFF163HCB.bigWig bigWig (fold change over control) 649.5 MB
ENCFF163UML.bed bed (conservative IDR thresholded peaks) 384.9 KB
ENCFF194BMM.bigWig bigWig (signal p-value) 688.6 MB
ENCFF200QIN.bam bam (unfiltered alignments) 700.4 MB
ENCFF212SHA.bigWig bigWig (fold change over control) 289.6 MB
ENCFF233MID.bed bed (optimal IDR thresholded peaks) 395.1 KB
ENCFF244PMW.bigWig bigWig (signal p-value) 379.7 MB
ENCFF248JJU.bigWig bigWig (signal p-value) 737.6 MB
ENCFF264FQI.bigBed bigBed (IDR thresholded peaks) 404.5 KB
ENCFF320IKB.bed bed (IDR ranked peaks) 2.9 MB
ENCFF321USR.bam bam (alignments) 466.0 MB
ENCFF327SFX.bigWig bigWig (signal p-value) 674.1 MB
ENCFF331ZDS.bigWig bigWig (fold change over control) 647.7 MB
ENCFF356DMG.fastq fastq (reads) 595.3 MB
ENCFF365DST.bed bed (IDR ranked peaks) 4.9 MB
ENCFF369ZUO.bam bam (unfiltered alignments) 777.5 MB
ENCFF385WYK.bigBed bigBed (peaks and background as input for IDR) 12.6 MB
ENCFF406FLU.bigWig bigWig (fold change over control) 376.9 MB
ENCFF413XGH.bed bed (conservative IDR thresholded peaks) 373.2 KB
ENCFF437LMW.bed bed (peaks and background as input for IDR) 6.2 MB
ENCFF449HYS.bigBed bigBed (conservative IDR thresholded peaks) 850.8 KB
ENCFF450ZOR.fastq fastq (reads) 547.5 MB
ENCFF475MLF.bigBed bigBed (conservative IDR thresholded peaks) 847.9 KB
ENCFF488OLY.bam bam (unfiltered alignments) 705.8 MB
ENCFF502QWU.bigWig bigWig (fold change over control) 644.0 MB
ENCFF560SVR.bam bam (alignments) 394.6 MB
ENCFF565CRX.bam bam (alignments) 404.4 MB
ENCFF602EKM.bigBed bigBed (peaks and background as input for IDR) 12.3 MB
ENCFF603ZKA.bigWig bigWig (signal p-value) 405.3 MB
ENCFF609FGI.bam bam (unfiltered alignments) 708.2 MB
ENCFF623AIB.bigWig bigWig (signal p-value) 466.3 MB
ENCFF649OZZ.bigBed bigBed (IDR thresholded peaks) 312.4 KB
ENCFF653RQA.bigWig bigWig (signal p-value) 687.4 MB
ENCFF656VUG.bed bed (IDR thresholded peaks) 398.3 KB
ENCFF668RTJ.bigWig bigWig (fold change over control) 288.5 MB
ENCFF671UYF.bigBed bigBed (IDR thresholded peaks) 891.7 KB
ENCFF684GAM.bigBed bigBed (optimal IDR thresholded peaks) 907.7 KB
ENCFF712BYL.bigBed bigBed (peaks and background as input for IDR) 12.4 MB
ENCFF713LWG.bam bam (unfiltered alignments) 774.9 MB
ENCFF719TYC.bed bed (IDR ranked peaks) 2.2 MB
ENCFF724ATT.bigWig bigWig (fold change over control) 413.8 MB
ENCFF755UKJ.bigWig bigWig (fold change over control) 288.6 MB
ENCFF765KIY.bigBed bigBed (optimal IDR thresholded peaks) 887.2 KB
ENCFF766UVZ.bam bam (alignments) 395.2 MB
ENCFF834INF.bed bed (peaks and background as input for IDR) 6.3 MB
ENCFF835ASU.bigBed bigBed (conservative IDR thresholded peaks) 870.7 KB
ENCFF852IQN.bed bed (IDR thresholded peaks) 180.0 KB
ENCFF866NDX.bed bed (conservative IDR thresholded peaks) 373.4 KB
ENCFF904PNO.bigBed bigBed (peaks and background as input for IDR) 12.4 MB
ENCFF918GVL.bed bed (peaks and background as input for IDR) 5.2 MB
ENCFF940WSO.bigWig bigWig (fold change over control) 276.5 MB
ENCFF955LMX.bed bed (peaks and background as input for IDR) 5.1 MB
ENCFF958SKC.bigWig bigWig (signal p-value) 709.2 MB
ENCFF966PVP.bed bed (peaks and background as input for IDR) 5.1 MB
ENCFF996EUH.bam bam (unfiltered alignments) 767.3 MB
ENCSR899GSH ENCSR · via encode_api

RBM34 ChIP-seq in K562

Homo sapiens

64 data files
FileTypeSize
ENCFF071GJH.bed bed (IDR thresholded peaks) 20.4 KB
ENCFF074MJS.bed bed (IDR thresholded peaks) 7.7 KB
ENCFF090TOO.bigBed bigBed (peaks and background as input for IDR) 12.8 MB
ENCFF100UTE.bed bed (conservative IDR thresholded peaks) 18.1 KB
ENCFF141YYY.bed bed (IDR thresholded peaks) 1.9 KB
ENCFF142HGO.bed bed (conservative IDR thresholded peaks) 17.9 KB
ENCFF144QTJ.bed bed (peaks and background as input for IDR) 4.6 MB
ENCFF150LGE.bigWig bigWig (signal p-value) 933.6 MB
ENCFF152JEV.bigBed bigBed (IDR thresholded peaks) 17.7 KB
ENCFF153MPX.bam bam (alignments) 335.4 MB
ENCFF171KWD.fastq fastq (reads) 323.5 MB
ENCFF177AXT.bigBed bigBed (peaks and background as input for IDR) 9.6 MB
ENCFF179WPR.bigBed bigBed (peaks and background as input for IDR) 9.7 MB
ENCFF187TCP.bam bam (alignments) 335.9 MB
ENCFF194OMB.bam bam (unfiltered alignments) 470.5 MB
ENCFF209GHK.bigWig bigWig (fold change over control) 731.6 MB
ENCFF225MPH.bigWig bigWig (fold change over control) 698.7 MB
ENCFF237UZV.bed bed (IDR ranked peaks) 371.7 KB
ENCFF239TSK.bigBed bigBed (conservative IDR thresholded peaks) 82.0 KB
ENCFF254PVV.bed bed (peaks and background as input for IDR) 4.2 MB
ENCFF303FDE.bigBed bigBed (peaks and background as input for IDR) 10.0 MB
ENCFF319QUS.bigWig bigWig (fold change over control) 746.0 MB
ENCFF330QLM.bam bam (unfiltered alignments) 466.9 MB
ENCFF353ZHX.bigWig bigWig (signal p-value) 559.2 MB
ENCFF395WMS.bigWig bigWig (signal p-value) 990.3 MB
ENCFF405DOB.bigWig bigWig (fold change over control) 294.3 MB
ENCFF415XXD.bed bed (peaks and background as input for IDR) 4.3 MB
ENCFF451CVE.bigBed bigBed (optimal IDR thresholded peaks) 85.8 KB
ENCFF453AVP.bigBed bigBed (conservative IDR thresholded peaks) 82.5 KB
ENCFF470GSP.bam bam (unfiltered alignments) 468.3 MB
ENCFF488SVK.bam bam (alignments) 338.8 MB
ENCFF516BXP.bigWig bigWig (signal p-value) 942.8 MB
ENCFF519EJI.bigWig bigWig (fold change over control) 288.7 MB
ENCFF527PUP.bam bam (unfiltered alignments) 475.8 MB
ENCFF539QIP.bigBed bigBed (peaks and background as input for IDR) 12.8 MB
ENCFF560BTA.bam bam (unfiltered alignments) 477.2 MB
ENCFF601PCW.bed bed (peaks and background as input for IDR) 5.8 MB
ENCFF603DPZ.bigWig bigWig (signal p-value) 605.2 MB
ENCFF605NTJ.bigBed bigBed (conservative IDR thresholded peaks) 81.3 KB
ENCFF632OCB.bigWig bigWig (signal p-value) 491.6 MB
ENCFF660BXE.bigBed bigBed (IDR thresholded peaks) 63.6 KB
ENCFF670ILH.bed bed (optimal IDR thresholded peaks) 20.6 KB
ENCFF682TEA.bed bed (IDR ranked peaks) 445.0 KB
ENCFF686LNT.bed bed (peaks and background as input for IDR) 4.3 MB
ENCFF702GMB.bam bam (alignments) 351.0 MB
ENCFF733CAH.bigWig bigWig (signal p-value) 1.1 GB
ENCFF745LIW.bam bam (unfiltered alignments) 461.3 MB
ENCFF782GWS.bed bed (optimal IDR thresholded peaks) 20.8 KB
ENCFF847AXQ.bigWig bigWig (fold change over control) 452.3 MB
ENCFF857BZI.bigWig bigWig (signal p-value) 565.1 MB
ENCFF862AEO.bam bam (alignments) 347.8 MB
ENCFF862OAR.bigWig bigWig (fold change over control) 308.5 MB
ENCFF886DON.bigBed bigBed (IDR thresholded peaks) 85.9 KB
ENCFF894SKW.bigWig bigWig (signal p-value) 942.0 MB
ENCFF913YWB.bigWig bigWig (fold change over control) 433.4 MB
ENCFF923SJU.bed bed (IDR ranked peaks) 1.8 MB
ENCFF928ARP.bed bed (IDR ranked peaks) 1.8 MB
ENCFF934BOE.bed bed (peaks and background as input for IDR) 5.9 MB
ENCFF948AGS.fastq fastq (reads) 331.3 MB
ENCFF953ICQ.bam bam (alignments) 338.3 MB
ENCFF967DYH.bigWig bigWig (fold change over control) 302.8 MB
ENCFF971NYD.bigBed bigBed (peaks and background as input for IDR) 9.5 MB
ENCFF983PUB.bigBed bigBed (optimal IDR thresholded peaks) 85.8 KB
ENCFF990RDF.bed bed (conservative IDR thresholded peaks) 18.6 KB
ENCSR268QIQ ENCSR · via encode_api

SRSF3 ChIP-seq in K562

Homo sapiens

64 data files
FileTypeSize
ENCFF004VHV.bigWig bigWig (fold change over control) 180.2 MB
ENCFF009JHV.bed bed (IDR ranked peaks) 3.1 MB
ENCFF018DPB.bigBed bigBed (conservative IDR thresholded peaks) 114.0 KB
ENCFF031SIK.bigBed bigBed (IDR thresholded peaks) 118.0 KB
ENCFF048BKZ.bed bed (IDR thresholded peaks) 31.4 KB
ENCFF071IDD.bam bam (unfiltered alignments) 398.9 MB
ENCFF137DST.fastq fastq (reads) 282.0 MB
ENCFF147MBH.bigWig bigWig (fold change over control) 301.5 MB
ENCFF152QHL.bed bed (peaks and background as input for IDR) 3.4 MB
ENCFF158CXV.bigWig bigWig (signal p-value) 641.4 MB
ENCFF177PXT.bigWig bigWig (fold change over control) 173.2 MB
ENCFF177YFM.bigWig bigWig (signal p-value) 392.8 MB
ENCFF201YMB.bigWig bigWig (fold change over control) 494.6 MB
ENCFF207HTQ.bigWig bigWig (fold change over control) 482.2 MB
ENCFF210NKW.bam bam (alignments) 215.0 MB
ENCFF226YWL.bam bam (unfiltered alignments) 478.1 MB
ENCFF243NSS.bam bam (unfiltered alignments) 479.5 MB
ENCFF268GIX.bigBed bigBed (conservative IDR thresholded peaks) 117.5 KB
ENCFF284GZE.bigBed bigBed (optimal IDR thresholded peaks) 123.9 KB
ENCFF293OZD.bam bam (alignments) 233.6 MB
ENCFF344GRT.bigWig bigWig (signal p-value) 422.9 MB
ENCFF349SSL.bigWig bigWig (fold change over control) 275.4 MB
ENCFF351RVX.bed bed (peaks and background as input for IDR) 3.5 MB
ENCFF399EXT.bigWig bigWig (signal p-value) 732.9 MB
ENCFF419PHU.bigBed bigBed (IDR thresholded peaks) 67.5 KB
ENCFF421JUR.bigWig bigWig (fold change over control) 198.4 MB
ENCFF470XNO.bigWig bigWig (signal p-value) 634.7 MB
ENCFF512KTK.bed bed (IDR thresholded peaks) 5.6 KB
ENCFF521YEW.bigWig bigWig (signal p-value) 784.0 MB
ENCFF548IPK.bigBed bigBed (peaks and background as input for IDR) 7.6 MB
ENCFF558CCZ.bed bed (peaks and background as input for IDR) 5.7 MB
ENCFF560FQR.bigBed bigBed (peaks and background as input for IDR) 7.9 MB
ENCFF603PIC.bigWig bigWig (fold change over control) 198.5 MB
ENCFF614XZH.fastq fastq (reads) 358.7 MB
ENCFF620SVW.bed bed (IDR ranked peaks) 2.8 MB
ENCFF630BVT.bam bam (unfiltered alignments) 387.3 MB
ENCFF660YKV.bed bed (peaks and background as input for IDR) 5.9 MB
ENCFF663ZWD.bigBed bigBed (peaks and background as input for IDR) 7.5 MB
ENCFF667ECB.bam bam (alignments) 233.9 MB
ENCFF697PGR.bam bam (unfiltered alignments) 468.0 MB
ENCFF712WMH.bed bed (conservative IDR thresholded peaks) 27.8 KB
ENCFF721BJA.bigBed bigBed (peaks and background as input for IDR) 12.4 MB
ENCFF722XRW.bed bed (optimal IDR thresholded peaks) 35.1 KB
ENCFF744KPC.bam bam (unfiltered alignments) 398.1 MB
ENCFF806PSK.bed bed (IDR ranked peaks) 666.6 KB
ENCFF826RQT.bigWig bigWig (signal p-value) 391.2 MB
ENCFF832UQQ.bed bed (peaks and background as input for IDR) 3.5 MB
ENCFF837GWA.bigBed bigBed (conservative IDR thresholded peaks) 96.5 KB
ENCFF850LFE.bigBed bigBed (IDR thresholded peaks) 59.4 KB
ENCFF855KUE.bed bed (peaks and background as input for IDR) 3.5 MB
ENCFF865TWU.bigBed bigBed (peaks and background as input for IDR) 7.9 MB
ENCFF867QBC.bed bed (IDR thresholded peaks) 10.1 KB
ENCFF870QGL.bigBed bigBed (optimal IDR thresholded peaks) 104.0 KB
ENCFF872AKB.bigWig bigWig (signal p-value) 800.9 MB
ENCFF877JCM.bed bed (IDR ranked peaks) 869.6 KB
ENCFF890RUD.bigWig bigWig (fold change over control) 474.0 MB
ENCFF893YRO.bam bam (alignments) 214.7 MB
ENCFF902SDQ.bam bam (alignments) 235.6 MB
ENCFF904ZZF.bed bed (conservative IDR thresholded peaks) 29.4 KB
ENCFF926XGK.bed bed (optimal IDR thresholded peaks) 33.0 KB
ENCFF943FKG.bam bam (alignments) 251.2 MB
ENCFF959YOR.bed bed (conservative IDR thresholded peaks) 31.0 KB
ENCFF969YQG.bigWig bigWig (signal p-value) 390.5 MB
ENCFF971ZKH.bigBed bigBed (peaks and background as input for IDR) 12.5 MB
ENCSR084YCO ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) pulldown experiment against CPEB1

14 data files
FileTypeSize
ENCFF013YVD.fastq fastq (reads) 811.7 MB
ENCFF313SEU.tsv tsv (enrichment) 688.0 KB
ENCFF473SQY.tsv tsv (enrichment) 168.0 KB
ENCFF487PLP.tsv tsv (enrichment) 131.0 B
ENCFF604BFV.tsv tsv (library fraction) 15.1 KB
ENCFF670HNQ.tsv tsv (library fraction) 265.7 KB
ENCFF734WNH.tsv tsv (library fraction) 63.6 KB
ENCFF742NAC.tsv tsv (library fraction) 1.1 MB
ENCFF745KUY.tsv tsv (enrichment) 41.0 KB
ENCFF808XIS.fastq fastq (reads) 611.7 MB
ENCFF859RIY.fastq fastq (reads) 518.2 MB
ENCFF884AFI.tsv tsv (enrichment) 10.0 KB
ENCFF903JOE.fastq fastq (reads) 471.9 MB
ENCFF960JKZ.fastq fastq (reads) 432.2 MB
ENCSR122MVN ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) input control experiment of DAZ3 and HNRNPCL1

1 data file
FileTypeSize
ENCFF541WDR.fastq fastq (reads) 501.3 MB
ENCSR545RWZ ENCSR · via encode_api

Control ChIP-seq on HepG2

Homo sapiens

14 data files
FileTypeSize
ENCFF061XKR.fastq fastq (reads) 1.0 GB
ENCFF100SSC.bam bam (alignments) 1.1 GB
ENCFF123DCH.bam bam (alignments) 1.3 GB
ENCFF215VZE.bam bam (unfiltered alignments) 1.6 GB
ENCFF262ILU.bam bam (alignments) 1.2 GB
ENCFF462KWM.bam bam (alignments) 1.2 GB
ENCFF562USM.bam bam (unfiltered alignments) 1.5 GB
ENCFF605JOL.fastq fastq (reads) 1.1 GB
ENCFF618DZT.bam bam (unfiltered alignments) 1.6 GB
ENCFF666CEZ.bam bam (unfiltered alignments) 1.5 GB
ENCFF704YLI.bam bam (unfiltered alignments) 1.5 GB
ENCFF719EDQ.bam bam (alignments) 1.2 GB
ENCFF723SMW.bam bam (unfiltered alignments) 1.6 GB
ENCFF874GUL.bam bam (alignments) 1.1 GB
ENCSR966DOU ENCSR · via encode_api

Control ChIP-seq in K562

Homo sapiens

14 data files
FileTypeSize
ENCFF025UQF.fastq fastq (reads) 915.4 MB
ENCFF026JBI.bam bam (unfiltered alignments) 1.3 GB
ENCFF198JCQ.bam bam (alignments) 926.6 MB
ENCFF201ZVH.fastq fastq (reads) 894.4 MB
ENCFF308PSW.bam bam (alignments) 949.4 MB
ENCFF477SGV.bam bam (alignments) 950.3 MB
ENCFF519TJP.bam bam (unfiltered alignments) 1.2 GB
ENCFF591RXP.bam bam (alignments) 943.9 MB
ENCFF607DFN.bam bam (alignments) 967.1 MB
ENCFF705ZEH.bam bam (alignments) 927.5 MB
ENCFF759ZXD.bam bam (unfiltered alignments) 1.2 GB
ENCFF778OWZ.bam bam (unfiltered alignments) 1.2 GB
ENCFF782IWR.bam bam (unfiltered alignments) 1.3 GB
ENCFF852YOS.bam bam (unfiltered alignments) 1.2 GB
ENCSR728SXZ ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) pulldown experiment against RC3H1

13 data files
FileTypeSize
ENCFF083LIF.tsv tsv (enrichment) 688.0 KB
ENCFF099SQP.tsv tsv (library fraction) 265.3 KB
ENCFF140TLP.tsv tsv (enrichment) 10.0 KB
ENCFF189FRP.fastq fastq (reads) 705.5 MB
ENCFF222OVF.tsv tsv (library fraction) 1.1 MB
ENCFF393MNZ.fastq fastq (reads) 546.8 MB
ENCFF540SRD.fastq fastq (reads) 744.1 MB
ENCFF597IYF.tsv tsv (library fraction) 63.7 KB
ENCFF607ZLL.fastq fastq (reads) 710.8 MB
ENCFF661BCA.tsv tsv (enrichment) 41.0 KB
ENCFF732QEB.fastq fastq (reads) 512.9 MB
ENCFF792ROS.tsv tsv (enrichment) 168.0 KB
ENCFF870TDL.tsv tsv (library fraction) 15.1 KB
ENCSR991ADX ENCSR · via encode_api

U2AF2 ChIP-seq in HepG2

Homo sapiens

64 data files
FileTypeSize
ENCFF006KUG.bigWig bigWig (fold change over control) 491.5 MB
ENCFF029QUB.bam bam (unfiltered alignments) 1.0 GB
ENCFF038QAU.bed bed (optimal IDR thresholded peaks) 58.3 KB
ENCFF039TRL.bigWig bigWig (signal p-value) 418.5 MB
ENCFF049IUL.bigBed bigBed (peaks and background as input for IDR) 12.8 MB
ENCFF066OBP.bigBed bigBed (conservative IDR thresholded peaks) 134.1 KB
ENCFF067AMY.bigBed bigBed (peaks and background as input for IDR) 12.5 MB
ENCFF091HXK.bed bed (IDR ranked peaks) 3.5 MB
ENCFF120OZU.bigBed bigBed (peaks and background as input for IDR) 10.6 MB
ENCFF124QTR.bigWig bigWig (signal p-value) 635.8 MB
ENCFF160VYZ.bigWig bigWig (signal p-value) 906.0 MB
ENCFF161AND.bigWig bigWig (fold change over control) 349.1 MB
ENCFF182MUR.bam bam (unfiltered alignments) 881.7 MB
ENCFF183OZR.bigBed bigBed (conservative IDR thresholded peaks) 125.8 KB
ENCFF194KNQ.fastq fastq (reads) 764.6 MB
ENCFF195PJB.bigWig bigWig (fold change over control) 347.4 MB
ENCFF197BLF.bigWig bigWig (signal p-value) 668.1 MB
ENCFF197UJE.bigWig bigWig (fold change over control) 745.8 MB
ENCFF221SGM.bigWig bigWig (fold change over control) 742.8 MB
ENCFF241YHR.bed bed (IDR ranked peaks) 3.4 MB
ENCFF243JAG.bed bed (peaks and background as input for IDR) 6.2 MB
ENCFF264JMK.bigWig bigWig (fold change over control) 288.7 MB
ENCFF297WAT.bigBed bigBed (peaks and background as input for IDR) 12.8 MB
ENCFF298BUG.bigWig bigWig (signal p-value) 389.7 MB
ENCFF306WXB.bigWig bigWig (signal p-value) 830.1 MB
ENCFF354HQO.bigBed bigBed (conservative IDR thresholded peaks) 127.8 KB
ENCFF358ASG.bed bed (peaks and background as input for IDR) 6.2 MB
ENCFF359VUY.bigBed bigBed (optimal IDR thresholded peaks) 141.1 KB
ENCFF366WEI.bigWig bigWig (fold change over control) 287.5 MB
ENCFF376CBQ.bam bam (unfiltered alignments) 1.0 GB
ENCFF419PQH.bed bed (conservative IDR thresholded peaks) 53.2 KB
ENCFF465JVB.fastq fastq (reads) 655.7 MB
ENCFF506XQK.bam bam (unfiltered alignments) 1011.8 MB
ENCFF522THU.bigBed bigBed (peaks and background as input for IDR) 10.6 MB
ENCFF524SHD.bigWig bigWig (fold change over control) 416.4 MB
ENCFF556EWI.bed bed (IDR thresholded peaks) 55.1 KB
ENCFF562ADR.bed bed (optimal IDR thresholded peaks) 54.3 KB
ENCFF572PWT.bed bed (peaks and background as input for IDR) 4.9 MB
ENCFF575RKC.bed bed (IDR ranked peaks) 1.6 MB
ENCFF583VGQ.bigWig bigWig (signal p-value) 399.7 MB
ENCFF607KWI.bam bam (alignments) 576.1 MB
ENCFF616JHC.bigWig bigWig (signal p-value) 450.7 MB
ENCFF628VOK.bigWig bigWig (signal p-value) 864.0 MB
ENCFF636VOL.bed bed (IDR thresholded peaks) 14.3 KB
ENCFF641AUO.bam bam (alignments) 491.7 MB
ENCFF672CNP.bam bam (unfiltered alignments) 879.3 MB
ENCFF676QOY.bed bed (peaks and background as input for IDR) 4.9 MB
ENCFF687AIT.bigBed bigBed (optimal IDR thresholded peaks) 137.2 KB
ENCFF713UPR.bed bed (peaks and background as input for IDR) 5.0 MB
ENCFF764DOP.bed bed (conservative IDR thresholded peaks) 47.6 KB
ENCFF778EFI.bam bam (alignments) 596.4 MB
ENCFF781OBT.bam bam (alignments) 492.2 MB
ENCFF801SLM.bed bed (conservative IDR thresholded peaks) 46.9 KB
ENCFF803VTE.bam bam (unfiltered alignments) 866.2 MB
ENCFF824YDR.bigBed bigBed (IDR thresholded peaks) 64.3 KB
ENCFF837KEU.bigWig bigWig (fold change over control) 741.1 MB
ENCFF862OCD.bed bed (IDR ranked peaks) 1.6 MB
ENCFF876DYN.bed bed (IDR thresholded peaks) 17.3 KB
ENCFF883UWI.bam bam (alignments) 575.5 MB
ENCFF899MFZ.bam bam (alignments) 510.8 MB
ENCFF900HTW.bed bed (peaks and background as input for IDR) 5.0 MB
ENCFF902GYZ.bigBed bigBed (IDR thresholded peaks) 80.1 KB
ENCFF929UYP.bigBed bigBed (peaks and background as input for IDR) 12.5 MB
ENCFF948FDH.bigBed bigBed (IDR thresholded peaks) 163.1 KB
ENCSR598GER ENCSR · via encode_api

CCAR2 ChIP-seq in K562

Homo sapiens

64 data files
FileTypeSize
ENCFF002JLK.bed bed (IDR ranked peaks) 594.4 KB
ENCFF022XTL.bed bed (IDR thresholded peaks) 2.2 KB
ENCFF068SIR.bigWig bigWig (fold change over control) 640.0 MB
ENCFF151PBI.bigWig bigWig (signal p-value) 701.7 MB
ENCFF177MFI.bigBed bigBed (peaks and background as input for IDR) 12.7 MB
ENCFF187HZZ.bigBed bigBed (conservative IDR thresholded peaks) 94.9 KB
ENCFF216ZGU.bigBed bigBed (IDR thresholded peaks) 79.5 KB
ENCFF221IKQ.bam bam (unfiltered alignments) 747.0 MB
ENCFF242PNV.bam bam (unfiltered alignments) 744.5 MB
ENCFF249LXA.bam bam (alignments) 442.1 MB
ENCFF254GMG.bigBed bigBed (peaks and background as input for IDR) 12.7 MB
ENCFF276NAQ.bam bam (unfiltered alignments) 766.5 MB
ENCFF280IUC.bam bam (alignments) 401.6 MB
ENCFF291XTR.bam bam (unfiltered alignments) 755.4 MB
ENCFF295PUF.bam bam (unfiltered alignments) 734.0 MB
ENCFF298ZSE.bed bed (peaks and background as input for IDR) 5.5 MB
ENCFF345XUQ.bed bed (peaks and background as input for IDR) 4.1 MB
ENCFF351RER.bigWig bigWig (fold change over control) 373.8 MB
ENCFF353AGJ.bigBed bigBed (peaks and background as input for IDR) 10.1 MB
ENCFF366SWW.bam bam (alignments) 413.3 MB
ENCFF374QYZ.bed bed (IDR thresholded peaks) 2.7 KB
ENCFF379EHI.bigWig bigWig (signal p-value) 355.6 MB
ENCFF380FQR.bigBed bigBed (IDR thresholded peaks) 81.2 KB
ENCFF418IAI.bam bam (alignments) 401.0 MB
ENCFF432QQR.bigWig bigWig (fold change over control) 255.7 MB
ENCFF442GXI.bigBed bigBed (peaks and background as input for IDR) 9.9 MB
ENCFF448DHF.bigBed bigBed (conservative IDR thresholded peaks) 73.3 KB
ENCFF457TVR.bed bed (conservative IDR thresholded peaks) 9.3 KB
ENCFF459XQB.bigWig bigWig (fold change over control) 409.8 MB
ENCFF470GVA.bed bed (peaks and background as input for IDR) 4.1 MB
ENCFF477IOW.bed bed (peaks and background as input for IDR) 4.3 MB
ENCFF505RMO.bigBed bigBed (IDR thresholded peaks) 85.9 KB
ENCFF522MWJ.fastq fastq (reads) 577.6 MB
ENCFF563QHQ.bigWig bigWig (signal p-value) 705.2 MB
ENCFF580YZC.bed bed (peaks and background as input for IDR) 4.2 MB
ENCFF583GKE.bed bed (optimal IDR thresholded peaks) 10.6 KB
ENCFF626OFL.bigWig bigWig (signal p-value) 419.3 MB
ENCFF642YKQ.bigWig bigWig (fold change over control) 608.4 MB
ENCFF655DKD.bed bed (peaks and background as input for IDR) 5.5 MB
ENCFF655VMC.bigWig bigWig (fold change over control) 255.4 MB
ENCFF657LFS.bed bed (IDR thresholded peaks) 10.0 KB
ENCFF673RFZ.bed bed (IDR ranked peaks) 2.3 MB
ENCFF674CKY.bam bam (unfiltered alignments) 769.5 MB
ENCFF685WDH.bed bed (IDR ranked peaks) 747.0 KB
ENCFF690WTD.bigBed bigBed (peaks and background as input for IDR) 9.9 MB
ENCFF695QLX.bigWig bigWig (signal p-value) 361.7 MB
ENCFF704PGT.bed bed (optimal IDR thresholded peaks) 11.3 KB
ENCFF717WHC.bigWig bigWig (signal p-value) 649.7 MB
ENCFF743WPX.bam bam (alignments) 413.9 MB
ENCFF757ZBP.bed bed (conservative IDR thresholded peaks) 8.5 KB
ENCFF761YMH.bigWig bigWig (fold change over control) 592.2 MB
ENCFF810ZWL.bigWig bigWig (signal p-value) 684.9 MB
ENCFF829PUD.bigBed bigBed (conservative IDR thresholded peaks) 84.4 KB
ENCFF853SVN.bigBed bigBed (peaks and background as input for IDR) 10.0 MB
ENCFF862OJY.bigWig bigWig (fold change over control) 254.4 MB
ENCFF873IAB.bigBed bigBed (optimal IDR thresholded peaks) 90.0 KB
ENCFF888SNS.bam bam (alignments) 428.9 MB
ENCFF890TZY.bed bed (IDR ranked peaks) 2.4 MB
ENCFF905CNP.fastq fastq (reads) 562.2 MB
ENCFF909GFF.bigWig bigWig (signal p-value) 362.7 MB
ENCFF928GCC.bigWig bigWig (fold change over control) 269.2 MB
ENCFF935QSG.bigWig bigWig (signal p-value) 602.4 MB
ENCFF960EEB.bigBed bigBed (optimal IDR thresholded peaks) 87.2 KB
ENCFF983SZW.bed bed (conservative IDR thresholded peaks) 9.5 KB
ENCSR356ECR ENCSR · via encode_api

RBM22 ChIP-seq in HepG2

Homo sapiens

62 data files
FileTypeSize
ENCFF066ITM.bigWig bigWig (signal p-value) 1.5 GB
ENCFF070XJJ.bed bed (peaks and background as input for IDR) 6.6 MB
ENCFF083QOX.bigWig bigWig (fold change over control) 887.9 MB
ENCFF097HAD.bed bed (peaks and background as input for IDR) 6.8 MB
ENCFF105SNX.bigBed bigBed (peaks and background as input for IDR) 11.1 MB
ENCFF107PLU.bigWig bigWig (signal p-value) 1.2 GB
ENCFF120ASJ.bam bam (unfiltered alignments) 1.7 GB
ENCFF157JXC.bam bam (unfiltered alignments) 1.8 GB
ENCFF163VKU.bigWig bigWig (signal p-value) 1.5 GB
ENCFF200YMU.bigWig bigWig (signal p-value) 1.2 GB
ENCFF231NZX.bed bed (peaks and background as input for IDR) 6.7 MB
ENCFF292RVQ.bigBed bigBed (optimal IDR thresholded peaks) 1.1 MB
ENCFF296QZG.bigBed bigBed (optimal IDR thresholded peaks) 1.1 MB
ENCFF305WYD.bed bed (optimal IDR thresholded peaks) 612.5 KB
ENCFF314QCI.bigBed bigBed (IDR thresholded peaks) 407.6 KB
ENCFF341FNZ.bam bam (unfiltered alignments) 1.7 GB
ENCFF366BIR.bam bam (alignments) 1.0 GB
ENCFF431QLB.bam bam (alignments) 1.7 GB
ENCFF432DWZ.bigWig bigWig (fold change over control) 1.0 GB
ENCFF457BJI.bed bed (conservative IDR thresholded peaks) 625.2 KB
ENCFF469KKQ.bam bam (unfiltered alignments) 3.2 GB
ENCFF501UXP.bam bam (unfiltered alignments) 3.2 GB
ENCFF502ZUV.bed bed (IDR thresholded peaks) 320.2 KB
ENCFF536MOJ.bigBed bigBed (peaks and background as input for IDR) 11.3 MB
ENCFF540AOE.bed bed (peaks and background as input for IDR) 6.8 MB
ENCFF545PRX.bigWig bigWig (fold change over control) 596.0 MB
ENCFF561IAJ.bigBed bigBed (conservative IDR thresholded peaks) 1.1 MB
ENCFF562CAQ.bed bed (IDR ranked peaks) 8.3 MB
ENCFF587OZE.fastq fastq (reads) 1.1 GB
ENCFF601TYR.bigWig bigWig (signal p-value) 925.2 MB
ENCFF632OSR.bigWig bigWig (fold change over control) 1.2 GB
ENCFF645OJP.bigBed bigBed (peaks and background as input for IDR) 11.2 MB
ENCFF655TBA.bigWig bigWig (fold change over control) 1.3 GB
ENCFF671OZB.bam bam (unfiltered alignments) 3.1 GB
ENCFF688VHI.bed bed (optimal IDR thresholded peaks) 625.7 KB
ENCFF696YYU.bam bam (alignments) 1.0 GB
ENCFF714EHP.bigWig bigWig (fold change over control) 761.4 MB
ENCFF714YAN.bed bed (IDR thresholded peaks) 182.3 KB
ENCFF719SJV.bam bam (alignments) 1.5 GB
ENCFF756XIX.bed bed (peaks and background as input for IDR) 6.8 MB
ENCFF772WXT.bigWig bigWig (signal p-value) 1.6 GB
ENCFF777JMV.bigWig bigWig (fold change over control) 868.8 MB
ENCFF782IOD.bed bed (IDR ranked peaks) 9.2 MB
ENCFF806MMQ.bigWig bigWig (signal p-value) 1015.5 MB
ENCFF814LIG.bed bed (IDR ranked peaks) 10.5 MB
ENCFF819RUS.bigBed bigBed (IDR thresholded peaks) 755.0 KB
ENCFF820SUL.bed bed (IDR ranked peaks) 8.7 MB
ENCFF833PEG.bam bam (alignments) 1.7 GB
ENCFF835AEX.bam bam (alignments) 988.0 MB
ENCFF835IHR.bed bed (peaks and background as input for IDR) 6.7 MB
ENCFF840RGL.fastq fastq (reads) 976.7 MB
ENCFF857PMC.bed bed (IDR thresholded peaks) 136.6 KB
ENCFF880UMI.bigWig bigWig (signal p-value) 1019.2 MB
ENCFF895GNL.bigBed bigBed (peaks and background as input for IDR) 11.3 MB
ENCFF899UXI.bigBed bigBed (peaks and background as input for IDR) 11.2 MB
ENCFF921LOP.bigBed bigBed (peaks and background as input for IDR) 11.0 MB
ENCFF924MON.fastq fastq (reads) 869.8 MB
ENCFF938EGN.bigWig bigWig (fold change over control) 1.3 GB
ENCFF958IZK.bigWig bigWig (fold change over control) 606.3 MB
ENCFF970VZQ.bigBed bigBed (IDR thresholded peaks) 339.6 KB
ENCFF982TMD.bigWig bigWig (signal p-value) 950.3 MB
ENCFF985NRQ.fastq fastq (reads) 1.2 GB
ENCSR392HSJ ENCSR · via encode_api

RNA-seq on K562 cells treated with an shRNA knockdown against HNRNPF. (HNRNPF_BGKLV21)

Homo sapiens

92 data files
FileTypeSize
ENCFF003KYX.bigWig bigWig (plus strand signal of all reads) 64.6 MB
ENCFF032XDR.bigWig bigWig (plus strand signal of all reads) 75.2 MB
ENCFF043PWJ.bam bam (transcriptome alignments) 4.4 GB
ENCFF071WOE.bam bam (transcriptome alignments) 3.7 GB
ENCFF075ICQ.bigWig bigWig (minus strand signal of all reads) 59.2 MB
ENCFF082HIY.bam bam (alignments) 3.3 GB
ENCFF083BAK.bam bam (alignments) 2.8 GB
ENCFF094FKC.bigWig bigWig (minus strand signal of all reads) 66.5 MB
ENCFF097YYC.bigWig bigWig (minus strand signal of unique reads) 62.5 MB
ENCFF099EAW.bigWig bigWig (plus strand signal of all reads) 65.1 MB
ENCFF101NRE.bigWig bigWig (plus strand signal of unique reads) 59.3 MB
ENCFF102WKP.bam bam (alignments) 2.8 GB
ENCFF107NVS.tsv tsv (transcript quantifications) 25.3 MB
ENCFF130KME.bigWig bigWig (minus strand signal of all reads) 63.4 MB
ENCFF143QRE.tsv tsv (gene quantifications) 10.4 MB
ENCFF153WML.bigWig bigWig (plus strand signal of unique reads) 63.2 MB
ENCFF163DTG.bigWig bigWig (plus strand signal of all reads) 71.3 MB
ENCFF165ZWV.bigWig bigWig (plus strand signal of unique reads) 67.2 MB
ENCFF172KYA.bigWig bigWig (plus strand signal of unique reads) 63.3 MB
ENCFF182IFP.bigWig bigWig (plus strand signal of all reads) 70.3 MB
ENCFF203USH.tsv tsv (transcript quantifications) 27.3 MB
ENCFF207RPH.bigWig bigWig (plus strand signal of all reads) 71.4 MB
ENCFF230GYI.bigWig bigWig (minus strand signal of all reads) 66.9 MB
ENCFF230QAT.tar tar (differential splicing quantifications) 3.2 MB
ENCFF251ULM.tsv tsv (transcript quantifications) 29.8 MB
ENCFF278MTU.bigWig bigWig (plus strand signal of unique reads) 56.0 MB
ENCFF287POL.tsv tsv (gene quantifications) 9.4 MB
ENCFF291UDP.bigWig bigWig (minus strand signal of all reads) 69.3 MB
ENCFF331UNF.bigWig bigWig (plus strand signal of all reads) 73.5 MB
ENCFF336DOB.bigWig bigWig (minus strand signal of unique reads) 65.1 MB
ENCFF338CMW.bam bam (alignments) 2.8 GB
ENCFF340YJW.fastq fastq (reads) 1.9 GB
ENCFF345BJV.bam bam (alignments) 3.8 GB
ENCFF367XJH.bigWig bigWig (minus strand signal of unique reads) 58.3 MB
ENCFF382FUD.bigWig bigWig (minus strand signal of all reads) 72.6 MB
ENCFF387KRK.bigWig bigWig (plus strand signal of unique reads) 66.6 MB
ENCFF388WZY.bigWig bigWig (plus strand signal of unique reads) 63.5 MB
ENCFF400QUH.bam bam (alignments) 3.2 GB
ENCFF433YBS.bigWig bigWig (minus strand signal of unique reads) 61.6 MB
ENCFF457KJD.bigWig bigWig (minus strand signal of unique reads) 65.7 MB
ENCFF461ECE.bigWig bigWig (minus strand signal of unique reads) 64.9 MB
ENCFF469IRJ.bam bam (alignments) 3.2 GB
ENCFF471RAB.bigWig bigWig (plus strand signal of all reads) 75.0 MB
ENCFF472ALZ.bam bam (alignments) 3.8 GB
ENCFF484DQQ.bigWig bigWig (plus strand signal of all reads) 68.1 MB
ENCFF491BIR.bigWig bigWig (minus strand signal of all reads) 74.2 MB
ENCFF496TSN.tar tar (differential splicing quantifications) 14.3 MB
ENCFF506SUC.bam bam (transcriptome alignments) 4.4 GB
ENCFF516CPA.bigWig bigWig (plus strand signal of all reads) 67.4 MB
ENCFF516ZXB.tsv tsv (transcript quantifications) 27.3 MB
ENCFF524IXU.bigWig bigWig (minus strand signal of all reads) 63.8 MB
ENCFF531LPA.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF532WGV.tsv tsv (transcript quantifications) 24.9 MB
ENCFF535ZSO.bigWig bigWig (minus strand signal of unique reads) 54.3 MB
ENCFF542IZE.tar tar (differential splicing quantifications) 3.6 MB
ENCFF551RQD.bigWig bigWig (minus strand signal of all reads) 74.1 MB
ENCFF576ZAN.bigWig bigWig (minus strand signal of unique reads) 58.1 MB
ENCFF580JQT.bigWig bigWig (plus strand signal of unique reads) 59.7 MB
ENCFF588DQR.bam bam (alignments) 3.7 GB
ENCFF608PGM.tsv tsv (differential expression quantifications) 1.6 MB
ENCFF608QUG.bigWig bigWig (minus strand signal of all reads) 70.4 MB
ENCFF621ACO.bigWig bigWig (plus strand signal of all reads) 60.4 MB
ENCFF632UHU.bigWig bigWig (minus strand signal of unique reads) 58.0 MB
ENCFF652DTF.tsv tsv (transcript quantifications) 24.9 MB
ENCFF668GBE.bam bam (transcriptome alignments) 4.9 GB
ENCFF669DUI.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF674GJW.tsv tsv (transcript quantifications) 25.3 MB
ENCFF675VSJ.tsv tsv (gene quantifications) 9.4 MB
ENCFF686AJO.bigWig bigWig (minus strand signal of unique reads) 62.3 MB
ENCFF698CUT.bigWig bigWig (plus strand signal of all reads) 64.0 MB
ENCFF711QKP.bam bam (transcriptome alignments) 4.1 GB
ENCFF730ONJ.bigWig bigWig (minus strand signal of unique reads) 61.8 MB
ENCFF741GMP.tsv tsv (gene quantifications) 9.1 MB
ENCFF745KZP.tsv tsv (gene quantifications) 9.1 MB
ENCFF750QPN.tsv tsv (gene quantifications) 10.4 MB
ENCFF758PWV.bigWig bigWig (plus strand signal of unique reads) 66.6 MB
ENCFF764JSZ.bam bam (alignments) 3.2 GB
ENCFF816HEP.tsv tsv (transcript quantifications) 29.8 MB
ENCFF828EVY.bigWig bigWig (minus strand signal of unique reads) 62.0 MB
ENCFF833KBR.tsv tsv (differential expression quantifications) 4.2 MB
ENCFF863EKK.bam bam (transcriptome alignments) 3.7 GB
ENCFF876ERJ.bam bam (alignments) 3.3 GB
ENCFF877ELN.fastq fastq (reads) 1.8 GB
ENCFF880SJU.bam bam (alignments) 3.2 GB
ENCFF888DBC.fastq fastq (reads) 2.1 GB
ENCFF925SPJ.bigWig bigWig (minus strand signal of all reads) 70.4 MB
ENCFF938GRX.fastq fastq (reads) 1.7 GB
ENCFF943LHD.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF951WQN.bigWig bigWig (minus strand signal of all reads) 63.1 MB
ENCFF973KWF.bigWig bigWig (plus strand signal of unique reads) 60.0 MB
ENCFF975ZGN.bigWig bigWig (plus strand signal of unique reads) 64.0 MB
ENCFF982XCD.bigWig bigWig (plus strand signal of unique reads) 64.0 MB
ENCSR296MXW ENCSR · via encode_api

HNRNPUL1 ChIP-seq in K562

Homo sapiens

64 data files
FileTypeSize
ENCFF016DEO.bigWig bigWig (fold change over control) 933.2 MB
ENCFF021CTZ.bigBed bigBed (IDR thresholded peaks) 99.4 KB
ENCFF029EPX.bigWig bigWig (signal p-value) 667.6 MB
ENCFF036VGX.bed bed (peaks and background as input for IDR) 4.9 MB
ENCFF051FLZ.bigBed bigBed (conservative IDR thresholded peaks) 108.6 KB
ENCFF056OUU.bed bed (conservative IDR thresholded peaks) 15.6 KB
ENCFF062UJT.bigWig bigWig (fold change over control) 433.2 MB
ENCFF084EMC.bam bam (alignments) 748.6 MB
ENCFF102DKZ.bigWig bigWig (fold change over control) 407.7 MB
ENCFF149GKO.bigWig bigWig (fold change over control) 593.2 MB
ENCFF154RXQ.bed bed (conservative IDR thresholded peaks) 19.3 KB
ENCFF173YSU.bam bam (alignments) 830.7 MB
ENCFF195XFH.bigWig bigWig (fold change over control) 912.1 MB
ENCFF209OKY.bed bed (conservative IDR thresholded peaks) 15.5 KB
ENCFF227KQP.bigWig bigWig (signal p-value) 847.4 MB
ENCFF234JHW.bed bed (peaks and background as input for IDR) 4.9 MB
ENCFF235VMD.fastq fastq (reads) 1.0 GB
ENCFF275XJW.bam bam (alignments) 829.8 MB
ENCFF284GPL.bigBed bigBed (peaks and background as input for IDR) 10.4 MB
ENCFF293IAH.bam bam (unfiltered alignments) 1.3 GB
ENCFF298HVU.bigWig bigWig (fold change over control) 581.0 MB
ENCFF319GZK.bigBed bigBed (peaks and background as input for IDR) 10.4 MB
ENCFF332TAG.bigBed bigBed (IDR thresholded peaks) 93.5 KB
ENCFF389SYQ.bed bed (peaks and background as input for IDR) 4.7 MB
ENCFF404GRH.bed bed (peaks and background as input for IDR) 6.2 MB
ENCFF429WCK.bam bam (unfiltered alignments) 1.5 GB
ENCFF430XXU.bam bam (unfiltered alignments) 1.3 GB
ENCFF442TOL.bigWig bigWig (signal p-value) 1020.5 MB
ENCFF461DIC.bigWig bigWig (fold change over control) 901.1 MB
ENCFF477DLR.bam bam (unfiltered alignments) 1.5 GB
ENCFF481PYR.bigWig bigWig (signal p-value) 966.3 MB
ENCFF496LDY.bigBed bigBed (optimal IDR thresholded peaks) 121.9 KB
ENCFF516SIE.bigBed bigBed (optimal IDR thresholded peaks) 122.5 KB
ENCFF530GTP.bigBed bigBed (IDR thresholded peaks) 119.2 KB
ENCFF544YTS.bam bam (unfiltered alignments) 1.3 GB
ENCFF553KXA.bigBed bigBed (conservative IDR thresholded peaks) 107.4 KB
ENCFF569RKF.bed bed (IDR thresholded peaks) 9.9 KB
ENCFF575YSF.bed bed (IDR thresholded peaks) 12.6 KB
ENCFF605FNZ.bed bed (IDR ranked peaks) 2.4 MB
ENCFF608OEE.bigBed bigBed (peaks and background as input for IDR) 12.6 MB
ENCFF634JXW.bigBed bigBed (peaks and background as input for IDR) 10.5 MB
ENCFF646PYH.bed bed (IDR ranked peaks) 2.1 MB
ENCFF648RFW.bed bed (peaks and background as input for IDR) 4.7 MB
ENCFF662VOP.bigBed bigBed (peaks and background as input for IDR) 12.6 MB
ENCFF664HLZ.bigBed bigBed (conservative IDR thresholded peaks) 117.1 KB
ENCFF700VSW.bed bed (IDR thresholded peaks) 20.2 KB
ENCFF710DWQ.bed bed (IDR ranked peaks) 3.1 MB
ENCFF733RTM.bam bam (alignments) 747.8 MB
ENCFF738EEY.fastq fastq (reads) 1.1 GB
ENCFF753ONA.bam bam (alignments) 878.1 MB
ENCFF765KAI.bigWig bigWig (signal p-value) 481.8 MB
ENCFF768TJI.bed bed (optimal IDR thresholded peaks) 21.9 KB
ENCFF776MBR.bigWig bigWig (fold change over control) 416.0 MB
ENCFF788AWO.bed bed (peaks and background as input for IDR) 6.3 MB
ENCFF817OOZ.bam bam (alignments) 790.0 MB
ENCFF823KNI.bigWig bigWig (signal p-value) 419.0 MB
ENCFF919QSK.bam bam (unfiltered alignments) 1.5 GB
ENCFF920IAI.bigWig bigWig (fold change over control) 440.6 MB
ENCFF920IWC.bed bed (IDR ranked peaks) 3.1 MB
ENCFF936KAN.bigBed bigBed (peaks and background as input for IDR) 10.5 MB
ENCFF942XSO.bigWig bigWig (signal p-value) 666.9 MB
ENCFF950KEH.bigWig bigWig (signal p-value) 558.1 MB
ENCFF958OKS.bigWig bigWig (signal p-value) 560.9 MB
ENCFF991ZSC.bed bed (optimal IDR thresholded peaks) 20.8 KB
ENCSR517JHY ENCSR · via encode_api

RNA-seq on K562 cells treated with an shRNA knockdown against MAK16. (MAK16_BGKLV32)

Homo sapiens

92 data files
FileTypeSize
ENCFF004FUS.bigWig bigWig (minus strand signal of unique reads) 69.9 MB
ENCFF019QAW.tsv tsv (gene quantifications) 9.1 MB
ENCFF025NBS.bigWig bigWig (minus strand signal of all reads) 111.2 MB
ENCFF041OTN.bigWig bigWig (minus strand signal of all reads) 126.2 MB
ENCFF054TPZ.bigWig bigWig (plus strand signal of all reads) 129.0 MB
ENCFF059LSB.bigWig bigWig (plus strand signal of unique reads) 114.5 MB
ENCFF087DAN.bigWig bigWig (minus strand signal of all reads) 127.3 MB
ENCFF102ROC.bigWig bigWig (plus strand signal of unique reads) 77.2 MB
ENCFF120DLE.bigWig bigWig (plus strand signal of unique reads) 71.6 MB
ENCFF136BCN.tsv tsv (gene quantifications) 9.5 MB
ENCFF141PMW.tar tar (differential splicing quantifications) 17.0 MB
ENCFF155CQP.bigWig bigWig (minus strand signal of all reads) 74.9 MB
ENCFF163KJX.bigWig bigWig (minus strand signal of all reads) 75.7 MB
ENCFF166ZDA.bam bam (alignments) 3.8 GB
ENCFF174ESR.bigWig bigWig (plus strand signal of unique reads) 68.2 MB
ENCFF180HSG.bam bam (alignments) 4.6 GB
ENCFF183HDS.bigWig bigWig (minus strand signal of all reads) 127.3 MB
ENCFF193BAH.bigWig bigWig (minus strand signal of all reads) 84.6 MB
ENCFF204LTI.bam bam (transcriptome alignments) 5.9 GB
ENCFF207QYZ.bigWig bigWig (plus strand signal of unique reads) 77.2 MB
ENCFF221JOY.bigWig bigWig (minus strand signal of all reads) 112.3 MB
ENCFF238RQR.fastq fastq (reads) 2.5 GB
ENCFF241YUC.bam bam (alignments) 4.7 GB
ENCFF242XKB.bam bam (transcriptome alignments) 12.0 GB
ENCFF255UKZ.tsv tsv (transcript quantifications) 25.4 MB
ENCFF265LDR.bam bam (alignments) 7.7 GB
ENCFF289PQM.fastq fastq (reads) 5.0 GB
ENCFF294LTI.bigWig bigWig (minus strand signal of all reads) 85.8 MB
ENCFF311WNG.fastq fastq (reads) 2.5 GB
ENCFF313OLO.bigWig bigWig (plus strand signal of all reads) 87.2 MB
ENCFF318EUL.bigWig bigWig (plus strand signal of unique reads) 77.0 MB
ENCFF332KZT.bam bam (alignments) 9.1 GB
ENCFF364UUK.bigWig bigWig (plus strand signal of all reads) 73.8 MB
ENCFF376GEI.bigWig bigWig (minus strand signal of unique reads) 99.2 MB
ENCFF394XYD.tsv tsv (transcript quantifications) 29.8 MB
ENCFF423QWP.bigWig bigWig (plus strand signal of unique reads) 102.2 MB
ENCFF435GMD.tsv tsv (differential expression quantifications) 1.8 MB
ENCFF458ASD.bigWig bigWig (plus strand signal of unique reads) 71.9 MB
ENCFF463PPI.bigWig bigWig (plus strand signal of unique reads) 106.8 MB
ENCFF475LQD.tsv tsv (differential expression quantifications) 4.4 MB
ENCFF486QHQ.bigWig bigWig (minus strand signal of unique reads) 75.3 MB
ENCFF493LBJ.bigWig bigWig (plus strand signal of all reads) 113.2 MB
ENCFF506LOF.bam bam (alignments) 9.5 GB
ENCFF507XBG.bigWig bigWig (minus strand signal of unique reads) 74.9 MB
ENCFF511OYP.bigWig bigWig (minus strand signal of all reads) 85.8 MB
ENCFF512GOJ.tsv tsv (gene quantifications) 9.5 MB
ENCFF531UBV.bigWig bigWig (plus strand signal of all reads) 128.1 MB
ENCFF536EFF.tsv tsv (gene quantifications) 10.4 MB
ENCFF553FSI.bigWig bigWig (plus strand signal of all reads) 76.3 MB
ENCFF560BTN.bam bam (transcriptome alignments) 10.6 GB
ENCFF567BJR.tsv tsv (transcript quantifications) 25.0 MB
ENCFF570QDB.bam bam (alignments) 4.7 GB
ENCFF571WDS.bigWig bigWig (plus strand signal of all reads) 87.2 MB
ENCFF574IUA.bigWig bigWig (plus strand signal of all reads) 129.1 MB
ENCFF592DKQ.fastq fastq (reads) 5.0 GB
ENCFF598MQX.bam bam (alignments) 7.6 GB
ENCFF617XCD.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF633QTK.bigWig bigWig (plus strand signal of unique reads) 115.1 MB
ENCFF656AYD.bigWig bigWig (minus strand signal of unique reads) 104.0 MB
ENCFF663PLT.tsv tsv (gene quantifications) 9.1 MB
ENCFF667QGW.bigWig bigWig (plus strand signal of unique reads) 105.4 MB
ENCFF678ECU.bam bam (alignments) 7.6 GB
ENCFF700OIK.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF710RRC.tar tar (differential splicing quantifications) 4.1 MB
ENCFF714NPJ.bam bam (alignments) 9.5 GB
ENCFF717TVL.bigWig bigWig (plus strand signal of all reads) 113.6 MB
ENCFF724GUC.tar tar (differential splicing quantifications) 5.3 MB
ENCFF734ETS.tsv tsv (transcript quantifications) 29.9 MB
ENCFF758OMR.bigWig bigWig (minus strand signal of unique reads) 112.5 MB
ENCFF759WYN.bigWig bigWig (minus strand signal of unique reads) 69.9 MB
ENCFF771PJA.tsv tsv (transcript quantifications) 27.4 MB
ENCFF777PDC.bigWig bigWig (plus strand signal of all reads) 86.1 MB
ENCFF792UXG.bigWig bigWig (plus strand signal of all reads) 77.4 MB
ENCFF797DNP.tsv tsv (gene quantifications) 10.4 MB
ENCFF813QER.bigWig bigWig (minus strand signal of unique reads) 111.6 MB
ENCFF814ZSV.tsv tsv (transcript quantifications) 25.3 MB
ENCFF826AHU.bigWig bigWig (minus strand signal of unique reads) 111.7 MB
ENCFF850GAM.bam bam (alignments) 3.9 GB
ENCFF859TPI.bigWig bigWig (minus strand signal of unique reads) 103.0 MB
ENCFF863MXF.bigWig bigWig (plus strand signal of unique reads) 114.4 MB
ENCFF871XFS.bam bam (alignments) 3.8 GB
ENCFF872AJT.bigWig bigWig (plus strand signal of all reads) 114.5 MB
ENCFF874XRH.bam bam (transcriptome alignments) 5.2 GB
ENCFF895CPW.tsv tsv (transcript quantifications) 24.9 MB
ENCFF911SFQ.bigWig bigWig (minus strand signal of unique reads) 66.1 MB
ENCFF924ZKY.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF925OIG.bigWig bigWig (minus strand signal of all reads) 111.5 MB
ENCFF925YGX.bam bam (transcriptome alignments) 10.5 GB
ENCFF942PUC.bigWig bigWig (minus strand signal of all reads) 72.0 MB
ENCFF958NYP.bigWig bigWig (minus strand signal of unique reads) 75.3 MB
ENCFF971AVQ.tsv tsv (transcript quantifications) 27.4 MB
ENCFF996XTR.bam bam (transcriptome alignments) 5.2 GB
ENCSR124KCF ENCSR · via encode_api

RNA-seq on HepG2 cells treated with an shRNA knockdown against STAU1. (STAU1_BGHLV30)

Homo sapiens

92 data files
FileTypeSize
ENCFF005ENR.bigWig bigWig (minus strand signal of unique reads) 86.0 MB
ENCFF030RRF.bigWig bigWig (plus strand signal of all reads) 102.7 MB
ENCFF032CCK.bigWig bigWig (minus strand signal of unique reads) 48.8 MB
ENCFF036XQB.fastq fastq (reads) 1.3 GB
ENCFF058REZ.bigWig bigWig (minus strand signal of unique reads) 90.3 MB
ENCFF066NGL.bigWig bigWig (minus strand signal of unique reads) 48.5 MB
ENCFF078AVS.bigWig bigWig (plus strand signal of all reads) 48.6 MB
ENCFF084DHZ.fastq fastq (reads) 3.8 GB
ENCFF098TRM.bigWig bigWig (minus strand signal of all reads) 49.5 MB
ENCFF098ZYW.bigWig bigWig (minus strand signal of all reads) 89.2 MB
ENCFF116SVI.bigWig bigWig (plus strand signal of unique reads) 88.5 MB
ENCFF158NDT.bigWig bigWig (minus strand signal of all reads) 54.5 MB
ENCFF159GDU.tsv tsv (transcript quantifications) 29.9 MB
ENCFF165FWJ.tsv tsv (gene quantifications) 9.4 MB
ENCFF192UEN.bigWig bigWig (plus strand signal of all reads) 102.7 MB
ENCFF193ABB.bigWig bigWig (plus strand signal of unique reads) 49.9 MB
ENCFF197LHR.bigWig bigWig (minus strand signal of all reads) 54.6 MB
ENCFF205TYV.bigWig bigWig (plus strand signal of all reads) 92.8 MB
ENCFF208UUG.bam bam (transcriptome alignments) 9.9 GB
ENCFF209VBW.tsv tsv (gene quantifications) 10.4 MB
ENCFF215BIU.tsv tsv (differential expression quantifications) 1.9 MB
ENCFF220NWQ.tar tar (differential splicing quantifications) 3.6 MB
ENCFF233AKC.bam bam (transcriptome alignments) 8.7 GB
ENCFF238DXQ.bigWig bigWig (minus strand signal of all reads) 101.0 MB
ENCFF286VSL.bigWig bigWig (plus strand signal of unique reads) 92.7 MB
ENCFF289RWB.bigWig bigWig (plus strand signal of all reads) 55.7 MB
ENCFF296CNY.tsv tsv (transcript quantifications) 25.4 MB
ENCFF296EDO.bigWig bigWig (plus strand signal of all reads) 101.4 MB
ENCFF307NVZ.bigWig bigWig (minus strand signal of all reads) 54.5 MB
ENCFF314NDN.bigWig bigWig (minus strand signal of all reads) 99.7 MB
ENCFF332UYD.bigWig bigWig (plus strand signal of unique reads) 92.7 MB
ENCFF354KUD.bigWig bigWig (minus strand signal of all reads) 50.8 MB
ENCFF363KZG.bigWig bigWig (plus strand signal of unique reads) 50.2 MB
ENCFF365QAH.bam bam (alignments) 1.8 GB
ENCFF380YSI.bigWig bigWig (minus strand signal of unique reads) 85.4 MB
ENCFF388PKA.bam bam (alignments) 1.8 GB
ENCFF408GMM.tsv tsv (gene quantifications) 9.1 MB
ENCFF413EES.bigWig bigWig (minus strand signal of unique reads) 82.3 MB
ENCFF413EPJ.bam bam (alignments) 5.1 GB
ENCFF414HQA.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF417OLB.bam bam (alignments) 5.2 GB
ENCFF423PGY.bam bam (alignments) 2.1 GB
ENCFF436JDD.tsv tsv (differential expression quantifications) 4.2 MB
ENCFF458THD.bam bam (alignments) 2.2 GB
ENCFF468ZSS.tar tar (differential splicing quantifications) 14.4 MB
ENCFF476HQR.bam bam (alignments) 1.8 GB
ENCFF478GCG.bam bam (transcriptome alignments) 8.7 GB
ENCFF480FXU.bigWig bigWig (plus strand signal of all reads) 55.6 MB
ENCFF486QZC.bigWig bigWig (plus strand signal of all reads) 51.9 MB
ENCFF500LKH.bigWig bigWig (plus strand signal of unique reads) 48.0 MB
ENCFF501MSW.bam bam (alignments) 5.1 GB
ENCFF515OWV.bam bam (transcriptome alignments) 2.9 GB
ENCFF523JIV.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF543FHR.bigWig bigWig (plus strand signal of unique reads) 92.8 MB
ENCFF553CSS.bam bam (transcriptome alignments) 2.9 GB
ENCFF554LAS.bigWig bigWig (plus strand signal of all reads) 91.0 MB
ENCFF554QEV.bam bam (alignments) 2.2 GB
ENCFF560DQU.bigWig bigWig (minus strand signal of unique reads) 47.0 MB
ENCFF561SMQ.bigWig bigWig (minus strand signal of all reads) 101.0 MB
ENCFF565GPO.tar tar (differential splicing quantifications) 3.1 MB
ENCFF577UMY.tsv tsv (differential expression quantifications) 2.8 MB
ENCFF582ULV.bigWig bigWig (minus strand signal of unique reads) 46.7 MB
ENCFF611NES.bam bam (transcriptome alignments) 3.3 GB
ENCFF621HQZ.bigWig bigWig (minus strand signal of all reads) 47.5 MB
ENCFF632KHF.bam bam (alignments) 6.4 GB
ENCFF649MWT.bigWig bigWig (minus strand signal of unique reads) 48.5 MB
ENCFF654RLH.bigWig bigWig (minus strand signal of unique reads) 90.3 MB
ENCFF666GBG.bam bam (alignments) 6.2 GB
ENCFF691HLO.fastq fastq (reads) 3.8 GB
ENCFF728JUT.bigWig bigWig (plus strand signal of unique reads) 48.3 MB
ENCFF756OXT.fastq fastq (reads) 1.2 GB
ENCFF779JJL.tsv tsv (transcript quantifications) 25.3 MB
ENCFF790DOE.bigWig bigWig (plus strand signal of unique reads) 45.1 MB
ENCFF795CJE.tsv tsv (transcript quantifications) 27.4 MB
ENCFF814AFD.tsv tsv (transcript quantifications) 29.8 MB
ENCFF819MHU.bigWig bigWig (plus strand signal of all reads) 55.7 MB
ENCFF820VEZ.bigWig bigWig (plus strand signal of all reads) 50.5 MB
ENCFF826PCF.bigWig bigWig (minus strand signal of all reads) 92.7 MB
ENCFF834FOW.tsv tsv (gene quantifications) 9.1 MB
ENCFF842MUV.bigWig bigWig (minus strand signal of unique reads) 90.3 MB
ENCFF867RUP.tsv tsv (transcript quantifications) 25.0 MB
ENCFF872CAU.bigWig bigWig (plus strand signal of unique reads) 87.6 MB
ENCFF886RJU.tsv tsv (gene quantifications) 9.5 MB
ENCFF906YUZ.tsv tsv (gene quantifications) 10.4 MB
ENCFF911JSV.tsv tsv (transcript quantifications) 27.2 MB
ENCFF912QOU.bam bam (alignments) 6.4 GB
ENCFF916UPL.bigWig bigWig (plus strand signal of unique reads) 49.9 MB
ENCFF922GMN.tsv tsv (transcript quantifications) 24.9 MB
ENCFF922LNJ.bigWig bigWig (plus strand signal of all reads) 94.6 MB
ENCFF936VSM.bigWig bigWig (minus strand signal of all reads) 91.1 MB
ENCFF959PXO.bigWig bigWig (minus strand signal of unique reads) 43.7 MB
ENCFF969XME.bigWig bigWig (plus strand signal of unique reads) 84.8 MB
ENCSR191VWK ENCSR · via encode_api

RNA-seq on K562 cells treated with an shRNA knockdown against PNPT1. (PNPT1-BGKLV25)

Homo sapiens

92 data files
FileTypeSize
ENCFF009QYE.tsv tsv (transcript quantifications) 25.3 MB
ENCFF011PHK.tsv tsv (differential expression quantifications) 2.8 MB
ENCFF019UMY.bigWig bigWig (minus strand signal of all reads) 88.3 MB
ENCFF035JOO.tsv tsv (gene quantifications) 9.1 MB
ENCFF036TFI.bigWig bigWig (minus strand signal of all reads) 134.2 MB
ENCFF047DLH.tsv tsv (gene quantifications) 9.5 MB
ENCFF062QGZ.tar tar (differential splicing quantifications) 5.1 MB
ENCFF063BXW.bigWig bigWig (plus strand signal of all reads) 103.0 MB
ENCFF072LFH.bigWig bigWig (plus strand signal of unique reads) 85.1 MB
ENCFF084DUX.bigWig bigWig (minus strand signal of unique reads) 83.6 MB
ENCFF084DYM.bigWig bigWig (minus strand signal of all reads) 154.9 MB
ENCFF107GMQ.tsv tsv (differential expression quantifications) 1.8 MB
ENCFF146HBC.bigWig bigWig (minus strand signal of unique reads) 122.8 MB
ENCFF165WDM.tar tar (differential splicing quantifications) 6.8 MB
ENCFF183RCM.bam bam (alignments) 6.3 GB
ENCFF183XWH.tar tar (differential splicing quantifications) 18.5 MB
ENCFF186BXH.bigWig bigWig (plus strand signal of all reads) 93.2 MB
ENCFF190AYB.bigWig bigWig (plus strand signal of all reads) 156.5 MB
ENCFF190KYX.bam bam (transcriptome alignments) 16.0 GB
ENCFF217QBR.bigWig bigWig (plus strand signal of unique reads) 138.3 MB
ENCFF225JMW.bigWig bigWig (minus strand signal of all reads) 91.7 MB
ENCFF226TES.bigWig bigWig (minus strand signal of unique reads) 134.4 MB
ENCFF229FED.tsv tsv (transcript quantifications) 29.8 MB
ENCFF230PNC.bigWig bigWig (plus strand signal of unique reads) 138.9 MB
ENCFF242BMX.bam bam (alignments) 5.3 GB
ENCFF258WRW.tsv tsv (gene quantifications) 9.1 MB
ENCFF269QHY.bigWig bigWig (minus strand signal of unique reads) 136.2 MB
ENCFF296ZOX.bigWig bigWig (minus strand signal of all reads) 103.3 MB
ENCFF302JJR.bigWig bigWig (minus strand signal of unique reads) 89.7 MB
ENCFF343ZVD.bigWig bigWig (plus strand signal of unique reads) 126.3 MB
ENCFF346TDV.tsv tsv (gene quantifications) 10.4 MB
ENCFF362IGI.tsv tsv (transcript quantifications) 27.6 MB
ENCFF370GTJ.bigWig bigWig (plus strand signal of all reads) 135.6 MB
ENCFF390CCF.bigWig bigWig (plus strand signal of unique reads) 86.0 MB
ENCFF401ZFF.bigWig bigWig (plus strand signal of all reads) 153.3 MB
ENCFF406YNH.bigWig bigWig (plus strand signal of unique reads) 82.4 MB
ENCFF414UZI.bam bam (alignments) 5.3 GB
ENCFF436VJV.bam bam (alignments) 5.3 GB
ENCFF436WGB.fastq fastq (reads) 3.4 GB
ENCFF447NSL.bam bam (alignments) 6.5 GB
ENCFF482VWR.bam bam (transcriptome alignments) 7.1 GB
ENCFF487KVI.tsv tsv (gene quantifications) 10.4 MB
ENCFF509SQP.bigWig bigWig (minus strand signal of all reads) 90.1 MB
ENCFF538UQD.fastq fastq (reads) 6.9 GB
ENCFF543FIZ.bigWig bigWig (plus strand signal of unique reads) 91.6 MB
ENCFF603YUU.tsv tsv (transcript quantifications) 27.4 MB
ENCFF613AGR.bigWig bigWig (plus strand signal of all reads) 156.5 MB
ENCFF644UEH.bam bam (alignments) 12.7 GB
ENCFF647VHF.fastq fastq (reads) 3.4 GB
ENCFF652DTM.bigWig bigWig (minus strand signal of all reads) 154.9 MB
ENCFF653MJW.bam bam (transcriptome alignments) 8.0 GB
ENCFF662FYV.bigWig bigWig (plus strand signal of all reads) 136.2 MB
ENCFF663UGW.bigWig bigWig (minus strand signal of unique reads) 84.1 MB
ENCFF664TRG.bigWig bigWig (plus strand signal of all reads) 91.0 MB
ENCFF668ODZ.bigWig bigWig (minus strand signal of all reads) 101.9 MB
ENCFF686GOL.bigWig bigWig (minus strand signal of all reads) 136.8 MB
ENCFF693GDP.fastq fastq (reads) 6.9 GB
ENCFF698ZUG.bam bam (transcriptome alignments) 14.3 GB
ENCFF701STP.bam bam (alignments) 6.5 GB
ENCFF708TOV.bigWig bigWig (plus strand signal of unique reads) 137.4 MB
ENCFF711QOB.bigWig bigWig (plus strand signal of unique reads) 92.0 MB
ENCFF734APM.bigWig bigWig (minus strand signal of unique reads) 135.5 MB
ENCFF734QDH.bam bam (alignments) 10.6 GB
ENCFF737GQZ.bigWig bigWig (minus strand signal of unique reads) 80.3 MB
ENCFF740BUK.bigWig bigWig (minus strand signal of all reads) 151.6 MB
ENCFF745AXW.bigWig bigWig (minus strand signal of unique reads) 90.0 MB
ENCFF764NQK.bam bam (alignments) 13.0 GB
ENCFF773OSD.bigWig bigWig (minus strand signal of unique reads) 125.9 MB
ENCFF778OEX.bam bam (transcriptome alignments) 7.1 GB
ENCFF784FEV.bigWig bigWig (plus strand signal of unique reads) 128.7 MB
ENCFF795WDT.bigWig bigWig (minus strand signal of unique reads) 89.8 MB
ENCFF810IWC.bigWig bigWig (minus strand signal of all reads) 103.3 MB
ENCFF815ROJ.bigWig bigWig (minus strand signal of unique reads) 124.0 MB
ENCFF818NRT.tsv tsv (gene quantifications) 9.5 MB
ENCFF828NKL.bam bam (alignments) 13.0 GB
ENCFF840NSM.tsv tsv (transcript quantifications) 24.9 MB
ENCFF840YOH.tsv tsv (transcript quantifications) 25.4 MB
ENCFF842YZC.tsv tsv (differential expression quantifications) 2.0 MB
ENCFF850GGT.tsv tsv (differential expression quantifications) 5.5 MB
ENCFF856DAH.bigWig bigWig (plus strand signal of unique reads) 91.7 MB
ENCFF872SIH.bigWig bigWig (plus strand signal of unique reads) 125.8 MB
ENCFF873IJA.bigWig bigWig (plus strand signal of all reads) 89.8 MB
ENCFF880OIB.bigWig bigWig (minus strand signal of all reads) 134.0 MB
ENCFF893KMJ.bigWig bigWig (plus strand signal of all reads) 104.3 MB
ENCFF899BJN.bam bam (alignments) 10.6 GB
ENCFF900UKH.bigWig bigWig (plus strand signal of all reads) 104.3 MB
ENCFF903GTG.bam bam (alignments) 10.7 GB
ENCFF911XRB.bigWig bigWig (plus strand signal of all reads) 138.9 MB
ENCFF920BPP.tsv tsv (differential expression quantifications) 4.4 MB
ENCFF937IQJ.tsv tsv (transcript quantifications) 24.9 MB
ENCFF964ADC.tsv tsv (transcript quantifications) 29.9 MB
ENCFF990GGZ.bam bam (transcriptome alignments) 14.2 GB
ENCSR952QDQ ENCSR · via encode_api

RNA-seq on K562 cells treated with an shRNA knockdown against METAP2. (METAP2_BGKLV36)

Homo sapiens

92 data files
FileTypeSize
ENCFF002WIU.bigWig bigWig (minus strand signal of unique reads) 76.8 MB
ENCFF014YSX.tsv tsv (transcript quantifications) 29.8 MB
ENCFF020VNC.tsv tsv (gene quantifications) 10.4 MB
ENCFF021XGO.bam bam (alignments) 4.4 GB
ENCFF023ALW.bigWig bigWig (plus strand signal of all reads) 78.2 MB
ENCFF024UVT.tsv tsv (gene quantifications) 9.1 MB
ENCFF030DEN.bam bam (alignments) 3.5 GB
ENCFF030ZZT.bigWig bigWig (minus strand signal of all reads) 77.1 MB
ENCFF057VFZ.tsv tsv (transcript quantifications) 27.3 MB
ENCFF066WEL.fastq fastq (reads) 2.0 GB
ENCFF099NHX.tsv tsv (transcript quantifications) 25.4 MB
ENCFF103LWV.bigWig bigWig (minus strand signal of unique reads) 60.5 MB
ENCFF105EPY.fastq fastq (reads) 2.7 GB
ENCFF108GMZ.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF121PUV.bigWig bigWig (plus strand signal of all reads) 88.5 MB
ENCFF166CED.bigWig bigWig (minus strand signal of all reads) 69.0 MB
ENCFF171BBA.bam bam (alignments) 3.3 GB
ENCFF180TRV.bam bam (alignments) 4.4 GB
ENCFF206XSO.tsv tsv (differential expression quantifications) 2.0 MB
ENCFF215JUP.bam bam (transcriptome alignments) 5.6 GB
ENCFF224LHM.bigWig bigWig (minus strand signal of unique reads) 68.0 MB
ENCFF241XEH.bam bam (transcriptome alignments) 4.8 GB
ENCFF254GMP.bigWig bigWig (plus strand signal of unique reads) 77.4 MB
ENCFF257IJN.bam bam (transcriptome alignments) 5.6 GB
ENCFF269RCK.bigWig bigWig (plus strand signal of all reads) 80.3 MB
ENCFF280ENZ.bigWig bigWig (minus strand signal of all reads) 71.2 MB
ENCFF317EPU.bigWig bigWig (plus strand signal of unique reads) 66.4 MB
ENCFF368CXX.tar tar (differential splicing quantifications) 3.9 MB
ENCFF371TVY.bam bam (alignments) 3.5 GB
ENCFF373IBV.tsv tsv (transcript quantifications) 25.0 MB
ENCFF382HSE.bigWig bigWig (plus strand signal of all reads) 72.5 MB
ENCFF406NLE.bam bam (alignments) 3.5 GB
ENCFF415AQL.bigWig bigWig (plus strand signal of unique reads) 65.1 MB
ENCFF426CSI.bigWig bigWig (plus strand signal of unique reads) 69.6 MB
ENCFF426HXK.bam bam (alignments) 3.2 GB
ENCFF447QLO.bigWig bigWig (plus strand signal of all reads) 87.3 MB
ENCFF454ZHU.bigWig bigWig (minus strand signal of unique reads) 75.8 MB
ENCFF459PNG.tsv tsv (transcript quantifications) 27.4 MB
ENCFF469HHN.bigWig bigWig (plus strand signal of all reads) 78.1 MB
ENCFF479MEU.fastq fastq (reads) 1.9 GB
ENCFF483HOM.bigWig bigWig (minus strand signal of all reads) 78.3 MB
ENCFF503QYK.fastq fastq (reads) 2.6 GB
ENCFF509XRX.bigWig bigWig (plus strand signal of unique reads) 69.5 MB
ENCFF513PCE.bigWig bigWig (minus strand signal of unique reads) 63.9 MB
ENCFF516LIE.tsv tsv (differential expression quantifications) 1.6 MB
ENCFF523DDO.bam bam (alignments) 2.6 GB
ENCFF532SHV.bam bam (alignments) 4.3 GB
ENCFF540HQP.bigWig bigWig (minus strand signal of all reads) 78.3 MB
ENCFF552VXS.bigWig bigWig (plus strand signal of all reads) 79.2 MB
ENCFF558PJN.bigWig bigWig (minus strand signal of all reads) 79.0 MB
ENCFF584UNY.tsv tsv (gene quantifications) 9.5 MB
ENCFF588ZGN.bigWig bigWig (minus strand signal of all reads) 66.2 MB
ENCFF605WVQ.bam bam (alignments) 2.6 GB
ENCFF651RMM.bigWig bigWig (plus strand signal of all reads) 69.8 MB
ENCFF659ZWJ.tsv tsv (transcript quantifications) 24.9 MB
ENCFF669DRQ.bigWig bigWig (plus strand signal of all reads) 79.2 MB
ENCFF684GXP.tsv tsv (gene quantifications) 10.4 MB
ENCFF701JYC.bigWig bigWig (minus strand signal of all reads) 86.3 MB
ENCFF722IFC.bigWig bigWig (plus strand signal of unique reads) 68.9 MB
ENCFF728CCX.tar tar (differential splicing quantifications) 3.4 MB
ENCFF735EYN.bigWig bigWig (minus strand signal of unique reads) 76.3 MB
ENCFF743VCJ.tsv tsv (gene quantifications) 9.1 MB
ENCFF748KED.bigWig bigWig (minus strand signal of all reads) 75.2 MB
ENCFF749LNJ.bam bam (transcriptome alignments) 4.2 GB
ENCFF753NTF.bigWig bigWig (plus strand signal of unique reads) 72.4 MB
ENCFF766IEG.bigWig bigWig (minus strand signal of unique reads) 67.6 MB
ENCFF775PQS.bam bam (transcriptome alignments) 6.4 GB
ENCFF777RUK.bigWig bigWig (plus strand signal of all reads) 88.5 MB
ENCFF796LST.bigWig bigWig (plus strand signal of unique reads) 77.7 MB
ENCFF803RJN.bigWig bigWig (plus strand signal of unique reads) 62.1 MB
ENCFF806CSB.bam bam (alignments) 3.3 GB
ENCFF806SSP.bigWig bigWig (plus strand signal of all reads) 67.6 MB
ENCFF811NBC.bigWig bigWig (plus strand signal of unique reads) 78.2 MB
ENCFF820BTY.bigWig bigWig (minus strand signal of all reads) 77.4 MB
ENCFF844BTH.tsv tsv (transcript quantifications) 25.4 MB
ENCFF864UFY.bam bam (transcriptome alignments) 4.1 GB
ENCFF865CVM.bigWig bigWig (minus strand signal of unique reads) 72.5 MB
ENCFF891JVI.tsv tsv (differential expression quantifications) 4.4 MB
ENCFF905MBE.bigWig bigWig (minus strand signal of all reads) 87.6 MB
ENCFF907QGB.bigWig bigWig (minus strand signal of unique reads) 68.3 MB
ENCFF911DAE.bigWig bigWig (minus strand signal of unique reads) 71.2 MB
ENCFF923HUS.bigWig bigWig (minus strand signal of unique reads) 64.8 MB
ENCFF935KFU.tsv tsv (transcript quantifications) 29.9 MB
ENCFF953MRF.tsv tsv (gene quantifications) 9.5 MB
ENCFF954JUG.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF961SDG.bam bam (alignments) 2.7 GB
ENCFF963NRR.bigWig bigWig (minus strand signal of unique reads) 68.1 MB
ENCFF966RTV.bigWig bigWig (plus strand signal of all reads) 76.5 MB
ENCFF968DWH.bigWig bigWig (plus strand signal of unique reads) 70.1 MB
ENCFF977FUJ.tar tar (differential splicing quantifications) 13.7 MB
ENCFF977HOK.bigWig bigWig (minus strand signal of all reads) 87.5 MB
ENCFF988BLJ.bigWig bigWig (plus strand signal of unique reads) 74.1 MB
ENCSR512EZA ENCSR · via encode_api

eCLIP control experiment on K562 against TBRG4

Homo sapiens

8 data files
FileTypeSize
ENCFF083OHX.bam bam (alignments) 433.3 MB
ENCFF365ZFZ.bam bam (alignments) 428.0 MB
ENCFF429NCV.bigWig bigWig (minus strand signal of unique reads) 18.5 MB
ENCFF469JBA.bigWig bigWig (plus strand signal of unique reads) 19.5 MB
ENCFF491PHA.fastq fastq (reads) 683.9 MB
ENCFF698NCA.bigWig bigWig (plus strand signal of unique reads) 19.2 MB
ENCFF741GJZ.bigWig bigWig (minus strand signal of unique reads) 18.8 MB
ENCFF986GFV.fastq fastq (reads) 698.3 MB
ENCSR266UVO ENCSR · via encode_api

eCLIP control experiment on K562 against EFTUD2

Homo sapiens

8 data files
FileTypeSize
ENCFF051JXL.bigWig bigWig (plus strand signal of unique reads) 31.0 MB
ENCFF283JNS.fastq fastq (reads) 773.8 MB
ENCFF290HUG.bigWig bigWig (minus strand signal of unique reads) 29.9 MB
ENCFF480DFF.fastq fastq (reads) 746.1 MB
ENCFF640KTQ.bam bam (alignments) 698.2 MB
ENCFF769KKV.bigWig bigWig (plus strand signal of unique reads) 31.7 MB
ENCFF786JER.bam bam (alignments) 688.4 MB
ENCFF897JTV.bigWig bigWig (minus strand signal of unique reads) 30.6 MB
ENCSR755PSW ENCSR · via encode_api

eCLIP control experiment on HepG2 against EIF3D

Homo sapiens

8 data files
FileTypeSize
ENCFF222TZU.bam bam (alignments) 740.2 MB
ENCFF281FID.bigWig bigWig (plus strand signal of unique reads) 30.9 MB
ENCFF400HLC.bam bam (alignments) 726.0 MB
ENCFF419ATF.bigWig bigWig (minus strand signal of unique reads) 29.9 MB
ENCFF432GMP.fastq fastq (reads) 786.5 MB
ENCFF491VMT.bigWig bigWig (minus strand signal of unique reads) 30.7 MB
ENCFF576RGH.fastq fastq (reads) 816.4 MB
ENCFF615NKF.bigWig bigWig (plus strand signal of unique reads) 30.4 MB
ENCSR538QOG ENCSR · via encode_api

Control shRNA against no target in HepG2 cells followed by RNA-seq. (NT-BGHLV31)

Homo sapiens

84 data files
FileTypeSize
ENCFF021UPL.tsv tsv (transcript quantifications) 25.3 MB
ENCFF023LXG.bigWig bigWig (minus strand signal of unique reads) 77.1 MB
ENCFF032GEI.bigWig bigWig (minus strand signal of all reads) 77.2 MB
ENCFF034XUQ.bigWig bigWig (minus strand signal of unique reads) 73.1 MB
ENCFF051FXL.bigWig bigWig (minus strand signal of unique reads) 74.3 MB
ENCFF077URG.fastq fastq (reads) 2.0 GB
ENCFF078BWJ.bigWig bigWig (plus strand signal of unique reads) 76.5 MB
ENCFF098XBS.bigWig bigWig (plus strand signal of unique reads) 80.3 MB
ENCFF118FMF.tsv tsv (transcript quantifications) 24.9 MB
ENCFF163LGG.tsv tsv (gene quantifications) 9.4 MB
ENCFF167WZT.bigWig bigWig (plus strand signal of all reads) 81.0 MB
ENCFF180AMX.bigWig bigWig (plus strand signal of all reads) 89.6 MB
ENCFF233KUD.bigWig bigWig (minus strand signal of unique reads) 71.6 MB
ENCFF233TAI.bigWig bigWig (minus strand signal of unique reads) 78.6 MB
ENCFF245DJG.bigWig bigWig (plus strand signal of all reads) 78.9 MB
ENCFF262BUU.bam bam (transcriptome alignments) 4.7 GB
ENCFF266KJR.bam bam (alignments) 2.8 GB
ENCFF286MAR.bam bam (alignments) 3.7 GB
ENCFF327ANA.bigWig bigWig (plus strand signal of all reads) 88.1 MB
ENCFF350JUK.bam bam (transcriptome alignments) 5.4 GB
ENCFF359FUP.tsv tsv (gene quantifications) 9.4 MB
ENCFF362RGS.bigWig bigWig (plus strand signal of unique reads) 79.4 MB
ENCFF363XUC.bigWig bigWig (plus strand signal of all reads) 88.7 MB
ENCFF373IQM.bam bam (transcriptome alignments) 5.5 GB
ENCFF408SQP.bigWig bigWig (plus strand signal of all reads) 80.1 MB
ENCFF424DJW.bigWig bigWig (plus strand signal of unique reads) 75.1 MB
ENCFF439NZO.bigWig bigWig (plus strand signal of all reads) 89.1 MB
ENCFF451XBX.tsv tsv (transcript quantifications) 27.4 MB
ENCFF459CHT.bam bam (alignments) 2.9 GB
ENCFF474IQB.bigWig bigWig (plus strand signal of unique reads) 80.0 MB
ENCFF486GXG.bam bam (alignments) 3.5 GB
ENCFF499ZFX.bigWig bigWig (minus strand signal of unique reads) 77.8 MB
ENCFF506QHH.bigWig bigWig (plus strand signal of all reads) 76.6 MB
ENCFF510TKT.bam bam (transcriptome alignments) 4.7 GB
ENCFF547YQX.bigWig bigWig (minus strand signal of unique reads) 77.2 MB
ENCFF566XUG.bam bam (alignments) 3.4 GB
ENCFF567UAR.bam bam (alignments) 3.6 GB
ENCFF568LLF.bam bam (transcriptome alignments) 4.8 GB
ENCFF573XVR.bigWig bigWig (minus strand signal of all reads) 87.5 MB
ENCFF573YOR.bigWig bigWig (plus strand signal of unique reads) 76.4 MB
ENCFF579IAU.bam bam (alignments) 2.8 GB
ENCFF590QAL.bam bam (alignments) 3.6 GB
ENCFF609EDC.bigWig bigWig (minus strand signal of all reads) 79.6 MB
ENCFF619BHH.tsv tsv (transcript quantifications) 27.4 MB
ENCFF619JUE.bigWig bigWig (minus strand signal of unique reads) 74.4 MB
ENCFF651SJX.bam bam (alignments) 2.8 GB
ENCFF677ERQ.bigWig bigWig (plus strand signal of unique reads) 73.8 MB
ENCFF690VST.bigWig bigWig (plus strand signal of all reads) 89.1 MB
ENCFF725CZV.tsv tsv (gene quantifications) 9.1 MB
ENCFF740NOP.bigWig bigWig (plus strand signal of all reads) 82.5 MB
ENCFF753LAU.bigWig bigWig (minus strand signal of all reads) 75.0 MB
ENCFF761PJO.bigWig bigWig (minus strand signal of all reads) 88.0 MB
ENCFF782VFQ.bigWig bigWig (minus strand signal of all reads) 80.8 MB
ENCFF789OEQ.bigWig bigWig (plus strand signal of unique reads) 72.7 MB
ENCFF794JOY.bigWig bigWig (minus strand signal of all reads) 87.5 MB
ENCFF797SIG.bigWig bigWig (minus strand signal of unique reads) 70.5 MB
ENCFF805QXY.bigWig bigWig (minus strand signal of all reads) 78.6 MB
ENCFF806SUH.bigWig bigWig (plus strand signal of unique reads) 76.5 MB
ENCFF821GCD.bigWig bigWig (plus strand signal of all reads) 89.7 MB
ENCFF821ZBH.bigWig bigWig (minus strand signal of all reads) 88.0 MB
ENCFF823MST.bam bam (alignments) 2.8 GB
ENCFF824TWL.tsv tsv (gene quantifications) 10.4 MB
ENCFF849VUY.bam bam (alignments) 2.9 GB
ENCFF850AXV.bigWig bigWig (plus strand signal of all reads) 81.0 MB
ENCFF856HRA.bigWig bigWig (plus strand signal of unique reads) 80.3 MB
ENCFF857BLR.bigWig bigWig (minus strand signal of unique reads) 74.4 MB
ENCFF859LOV.bigWig bigWig (minus strand signal of unique reads) 78.1 MB
ENCFF873JQT.tsv tsv (transcript quantifications) 29.8 MB
ENCFF887EYX.bigWig bigWig (minus strand signal of all reads) 79.5 MB
ENCFF891SKE.tsv tsv (transcript quantifications) 29.8 MB
ENCFF897HSX.bigWig bigWig (minus strand signal of unique reads) 78.1 MB
ENCFF898KVB.bam bam (transcriptome alignments) 4.8 GB
ENCFF909KFE.fastq fastq (reads) 2.0 GB
ENCFF911CFX.tsv tsv (gene quantifications) 10.4 MB
ENCFF915BFH.tsv tsv (transcript quantifications) 24.9 MB
ENCFF924TZR.fastq fastq (reads) 2.0 GB
ENCFF949KOY.fastq fastq (reads) 2.0 GB
ENCFF954PJI.tsv tsv (transcript quantifications) 25.3 MB
ENCFF958YDS.bam bam (alignments) 3.7 GB
ENCFF963KVI.bigWig bigWig (minus strand signal of all reads) 87.3 MB
ENCFF968ACA.bigWig bigWig (minus strand signal of all reads) 86.7 MB
ENCFF970SMH.tsv tsv (gene quantifications) 9.1 MB
ENCFF991ZSE.bigWig bigWig (plus strand signal of unique reads) 80.8 MB
ENCFF994NWJ.bigWig bigWig (plus strand signal of unique reads) 79.3 MB
ENCSR025XWZ ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) input control experiment of PUM1

1 data file
FileTypeSize
ENCFF761JAF.fastq fastq (reads) 453.1 MB
ENCSR299AAB ENCSR · via encode_api

eCLIP control experiment on K562 against HNRNPL

Homo sapiens

8 data files
FileTypeSize
ENCFF209EIX.bam bam (alignments) 428.2 MB
ENCFF539IDG.bigWig bigWig (plus strand signal of unique reads) 20.5 MB
ENCFF545SRQ.bigWig bigWig (minus strand signal of unique reads) 19.8 MB
ENCFF639SDC.bam bam (alignments) 423.1 MB
ENCFF796BVT.fastq fastq (reads) 586.6 MB
ENCFF818FZZ.bigWig bigWig (minus strand signal of unique reads) 19.6 MB
ENCFF862OAB.fastq fastq (reads) 568.6 MB
ENCFF945GXS.bigWig bigWig (plus strand signal of unique reads) 20.3 MB
ENCSR881RJL ENCSR · via encode_api

eCLIP control experiment on K562 against RPS11

Homo sapiens

8 data files
FileTypeSize
ENCFF067EPR.bam bam (alignments) 280.6 MB
ENCFF159ANK.fastq fastq (reads) 592.7 MB
ENCFF192VLG.bigWig bigWig (minus strand signal of unique reads) 13.6 MB
ENCFF194GKN.bigWig bigWig (plus strand signal of unique reads) 14.5 MB
ENCFF370VFC.bigWig bigWig (minus strand signal of unique reads) 13.9 MB
ENCFF431WVH.fastq fastq (reads) 620.4 MB
ENCFF536KJC.bam bam (alignments) 286.0 MB
ENCFF838NWM.bigWig bigWig (plus strand signal of unique reads) 14.2 MB
ENCSR454OFD ENCSR · via encode_api

eCLIP control experiment on HepG2 against DDX55

Homo sapiens

8 data files
FileTypeSize
ENCFF188HQX.bigWig bigWig (plus strand signal of unique reads) 24.6 MB
ENCFF227AUX.bigWig bigWig (plus strand signal of unique reads) 25.4 MB
ENCFF284VKE.fastq fastq (reads) 556.1 MB
ENCFF372ONC.bigWig bigWig (minus strand signal of unique reads) 24.2 MB
ENCFF419WYK.bam bam (alignments) 526.7 MB
ENCFF426NRC.fastq fastq (reads) 617.7 MB
ENCFF525BGY.bam bam (alignments) 539.2 MB
ENCFF635CCR.bigWig bigWig (minus strand signal of unique reads) 25.0 MB
ENCSR098VKQ ENCSR · via encode_api

eCLIP control experiment on HepG2 against ZC3H11A

Homo sapiens

8 data files
FileTypeSize
ENCFF025DXI.bam bam (alignments) 610.6 MB
ENCFF102OYH.bam bam (alignments) 601.7 MB
ENCFF374COS.bigWig bigWig (plus strand signal of unique reads) 30.2 MB
ENCFF562ADU.bigWig bigWig (minus strand signal of unique reads) 29.8 MB
ENCFF612GEW.fastq fastq (reads) 636.0 MB
ENCFF657EOF.bigWig bigWig (plus strand signal of unique reads) 29.8 MB
ENCFF813QVI.bigWig bigWig (minus strand signal of unique reads) 29.4 MB
ENCFF854LFS.fastq fastq (reads) 559.2 MB
ENCSR594RFP ENCSR · via encode_api

eCLIP control experiment on K562 against ZNF622

Homo sapiens

8 data files
FileTypeSize
ENCFF091KVP.bam bam (alignments) 705.2 MB
ENCFF406BSG.bigWig bigWig (plus strand signal of unique reads) 29.5 MB
ENCFF626LUV.fastq fastq (reads) 1001.5 MB
ENCFF664BQD.bigWig bigWig (minus strand signal of unique reads) 28.1 MB
ENCFF790DUN.bam bam (alignments) 699.7 MB
ENCFF795SBP.fastq fastq (reads) 975.1 MB
ENCFF922SZZ.bigWig bigWig (plus strand signal of unique reads) 29.3 MB
ENCFF980WWB.bigWig bigWig (minus strand signal of unique reads) 28.4 MB
ENCSR581CVA ENCSR · via encode_api

HNRNPH1 ChIP-seq in K562

Homo sapiens

64 data files
FileTypeSize
ENCFF008AAI.bigBed bigBed (IDR thresholded peaks) 93.2 KB
ENCFF040SIF.bed bed (IDR ranked peaks) 3.2 MB
ENCFF052IHY.bed bed (IDR ranked peaks) 1.8 MB
ENCFF077AHI.bed bed (IDR ranked peaks) 3.2 MB
ENCFF081ACP.bed bed (peaks and background as input for IDR) 5.1 MB
ENCFF115QJK.bigBed bigBed (optimal IDR thresholded peaks) 96.0 KB
ENCFF133JFO.bigWig bigWig (signal p-value) 393.4 MB
ENCFF142BIO.bigBed bigBed (peaks and background as input for IDR) 12.5 MB
ENCFF177KQJ.bam bam (unfiltered alignments) 978.2 MB
ENCFF189ACF.bigBed bigBed (IDR thresholded peaks) 82.9 KB
ENCFF238AUB.bigWig bigWig (signal p-value) 671.4 MB
ENCFF253KPM.bed bed (peaks and background as input for IDR) 6.4 MB
ENCFF254PLU.bigWig bigWig (signal p-value) 367.5 MB
ENCFF278POV.bam bam (alignments) 525.2 MB
ENCFF292JRY.bed bed (optimal IDR thresholded peaks) 6.2 KB
ENCFF295ZZB.bed bed (IDR thresholded peaks) 3.1 KB
ENCFF325SFZ.bed bed (conservative IDR thresholded peaks) 5.2 KB
ENCFF339BWX.bigBed bigBed (peaks and background as input for IDR) 12.5 MB
ENCFF351HSM.bed bed (peaks and background as input for IDR) 5.2 MB
ENCFF413RAW.bigBed bigBed (conservative IDR thresholded peaks) 94.6 KB
ENCFF424LYB.bigWig bigWig (fold change over control) 658.7 MB
ENCFF435KSG.bigBed bigBed (conservative IDR thresholded peaks) 95.5 KB
ENCFF452ULT.bigWig bigWig (fold change over control) 658.2 MB
ENCFF478CZF.bigWig bigWig (fold change over control) 283.8 MB
ENCFF489LOZ.bigWig bigWig (signal p-value) 422.3 MB
ENCFF494SVE.bigWig bigWig (signal p-value) 565.0 MB
ENCFF510PCF.bam bam (unfiltered alignments) 981.5 MB
ENCFF529KQE.bam bam (alignments) 489.7 MB
ENCFF535YSH.bed bed (IDR thresholded peaks) 5.6 KB
ENCFF541UDD.bigWig bigWig (fold change over control) 300.8 MB
ENCFF547CZR.bam bam (unfiltered alignments) 869.5 MB
ENCFF568TTD.bigBed bigBed (peaks and background as input for IDR) 12.5 MB
ENCFF578VSR.bigWig bigWig (fold change over control) 300.9 MB
ENCFF580QSY.bigBed bigBed (peaks and background as input for IDR) 12.5 MB
ENCFF594IKC.bam bam (alignments) 478.3 MB
ENCFF626YAE.bigWig bigWig (fold change over control) 424.0 MB
ENCFF658SGW.bam bam (alignments) 477.8 MB
ENCFF666JWH.bigBed bigBed (peaks and background as input for IDR) 12.6 MB
ENCFF674SSL.bigBed bigBed (optimal IDR thresholded peaks) 94.7 KB
ENCFF675CHJ.bed bed (IDR ranked peaks) 1.4 MB
ENCFF688MVC.bigWig bigWig (signal p-value) 587.6 MB
ENCFF706ONY.bed bed (peaks and background as input for IDR) 5.2 MB
ENCFF753OYD.fastq fastq (reads) 785.9 MB
ENCFF763XKW.bigWig bigWig (fold change over control) 659.3 MB
ENCFF770WSX.bigWig bigWig (fold change over control) 394.6 MB
ENCFF782XJI.bed bed (peaks and background as input for IDR) 5.1 MB
ENCFF791DFG.bam bam (unfiltered alignments) 872.1 MB
ENCFF797TVO.bed bed (conservative IDR thresholded peaks) 6.5 KB
ENCFF808QGE.bed bed (peaks and background as input for IDR) 6.3 MB
ENCFF814GBL.bigBed bigBed (IDR thresholded peaks) 84.2 KB
ENCFF826IAO.bam bam (unfiltered alignments) 985.6 MB
ENCFF844QFF.bed bed (optimal IDR thresholded peaks) 6.4 KB
ENCFF845COV.bigBed bigBed (peaks and background as input for IDR) 12.7 MB
ENCFF851XNV.bam bam (alignments) 538.7 MB
ENCFF856WBX.bigWig bigWig (fold change over control) 299.1 MB
ENCFF859JWK.bigWig bigWig (signal p-value) 394.2 MB
ENCFF870AMF.bam bam (alignments) 525.7 MB
ENCFF904WUN.bam bam (unfiltered alignments) 875.2 MB
ENCFF920ETU.bed bed (conservative IDR thresholded peaks) 6.0 KB
ENCFF923TRS.bigWig bigWig (signal p-value) 708.2 MB
ENCFF937PXB.bed bed (IDR thresholded peaks) 2.9 KB
ENCFF953NCJ.bigWig bigWig (signal p-value) 738.6 MB
ENCFF968BHS.bigBed bigBed (conservative IDR thresholded peaks) 91.2 KB
ENCFF999VUF.fastq fastq (reads) 693.1 MB
ENCSR764OXF ENCSR · via encode_api

RBM39 ChIP-seq in K562

Homo sapiens

64 data files
FileTypeSize
ENCFF017GAB.bigBed bigBed (IDR thresholded peaks) 176.7 KB
ENCFF017KVR.bigBed bigBed (optimal IDR thresholded peaks) 170.5 KB
ENCFF046WHP.bigWig bigWig (fold change over control) 785.4 MB
ENCFF055YKX.bed bed (conservative IDR thresholded peaks) 46.9 KB
ENCFF062YKU.bigWig bigWig (signal p-value) 810.3 MB
ENCFF063CFN.bam bam (alignments) 696.9 MB
ENCFF063ZJN.bigWig bigWig (signal p-value) 643.8 MB
ENCFF102ZEV.bigWig bigWig (fold change over control) 788.5 MB
ENCFF107MOF.bigWig bigWig (fold change over control) 523.5 MB
ENCFF124SCH.bigBed bigBed (peaks and background as input for IDR) 12.4 MB
ENCFF142ORQ.bam bam (alignments) 740.2 MB
ENCFF151RQE.bigBed bigBed (conservative IDR thresholded peaks) 188.5 KB
ENCFF162WNP.bigBed bigBed (conservative IDR thresholded peaks) 163.6 KB
ENCFF189KSL.bam bam (unfiltered alignments) 1.1 GB
ENCFF205BFQ.bigBed bigBed (conservative IDR thresholded peaks) 164.4 KB
ENCFF209JJD.bed bed (optimal IDR thresholded peaks) 51.1 KB
ENCFF218QBY.bam bam (alignments) 652.4 MB
ENCFF229CST.bed bed (IDR thresholded peaks) 25.5 KB
ENCFF283FKG.bam bam (unfiltered alignments) 1.0 GB
ENCFF302IWU.bigBed bigBed (peaks and background as input for IDR) 12.4 MB
ENCFF303ASM.bed bed (IDR ranked peaks) 4.4 MB
ENCFF338GMK.bam bam (alignments) 653.1 MB
ENCFF370IZC.bigWig bigWig (signal p-value) 513.2 MB
ENCFF385SRC.bed bed (peaks and background as input for IDR) 5.4 MB
ENCFF415BAE.bam bam (alignments) 692.7 MB
ENCFF438LZN.bam bam (unfiltered alignments) 1.1 GB
ENCFF450QYX.bigWig bigWig (fold change over control) 360.9 MB
ENCFF471VAC.bed bed (peaks and background as input for IDR) 6.5 MB
ENCFF480QOB.bigWig bigWig (fold change over control) 503.9 MB
ENCFF481OIK.bigWig bigWig (fold change over control) 364.5 MB
ENCFF494YKZ.bigWig bigWig (fold change over control) 378.9 MB
ENCFF495ALR.bed bed (IDR ranked peaks) 4.4 MB
ENCFF503DIK.bed bed (optimal IDR thresholded peaks) 56.8 KB
ENCFF512BEK.bigWig bigWig (signal p-value) 933.8 MB
ENCFF516RWD.bed bed (peaks and background as input for IDR) 6.5 MB
ENCFF518CED.fastq fastq (reads) 754.2 MB
ENCFF540MRJ.bigBed bigBed (peaks and background as input for IDR) 12.4 MB
ENCFF597XKS.bed bed (IDR ranked peaks) 3.6 MB
ENCFF638AEI.bed bed (peaks and background as input for IDR) 5.1 MB
ENCFF646UYA.bigWig bigWig (signal p-value) 669.7 MB
ENCFF656RDN.bam bam (alignments) 697.7 MB
ENCFF662SZV.bed bed (IDR thresholded peaks) 21.3 KB
ENCFF693ERI.bed bed (conservative IDR thresholded peaks) 48.4 KB
ENCFF727BON.bed bed (IDR ranked peaks) 3.2 MB
ENCFF756TIY.bed bed (IDR thresholded peaks) 54.6 KB
ENCFF790VZW.bigBed bigBed (IDR thresholded peaks) 105.3 KB
ENCFF806RMK.bigWig bigWig (signal p-value) 717.4 MB
ENCFF824WDZ.bigWig bigWig (fold change over control) 371.6 MB
ENCFF827CSL.bam bam (unfiltered alignments) 1020.7 MB
ENCFF828PSO.bigBed bigBed (peaks and background as input for IDR) 12.4 MB
ENCFF843ZPR.fastq fastq (reads) 790.7 MB
ENCFF847DAI.bigBed bigBed (IDR thresholded peaks) 110.2 KB
ENCFF879ZIG.bigBed bigBed (peaks and background as input for IDR) 12.4 MB
ENCFF907REL.bigBed bigBed (peaks and background as input for IDR) 12.4 MB
ENCFF914PAM.bigBed bigBed (optimal IDR thresholded peaks) 182.6 KB
ENCFF915DWW.bam bam (unfiltered alignments) 1.0 GB
ENCFF923WED.bed bed (peaks and background as input for IDR) 5.4 MB
ENCFF927SAQ.bam bam (unfiltered alignments) 1.0 GB
ENCFF931FDJ.bed bed (peaks and background as input for IDR) 5.1 MB
ENCFF934FBC.bigWig bigWig (signal p-value) 505.6 MB
ENCFF935JKE.bigWig bigWig (signal p-value) 426.5 MB
ENCFF939MXF.bigWig bigWig (signal p-value) 430.3 MB
ENCFF953NJK.bigWig bigWig (fold change over control) 827.7 MB
ENCFF983LFS.bed bed (conservative IDR thresholded peaks) 60.9 KB
ENCSR637EFF ENCSR · via encode_api

RNA-seq on K562 cells treated with a CRISPR gRNA against CEBPZ. (CEBPZ_BGKcLV02)

Homo sapiens

92 data files
FileTypeSize
ENCFF029CND.tar tar (differential splicing quantifications) 4.6 MB
ENCFF038JZC.tsv tsv (gene quantifications) 9.5 MB
ENCFF042BJH.bam bam (alignments) 3.7 GB
ENCFF150SRO.bigWig bigWig (plus strand signal of all reads) 89.2 MB
ENCFF151DXF.bigWig bigWig (plus strand signal of all reads) 100.6 MB
ENCFF159FIK.bam bam (alignments) 3.9 GB
ENCFF168MNV.tsv tsv (transcript quantifications) 29.8 MB
ENCFF190IPW.bigWig bigWig (minus strand signal of unique reads) 82.2 MB
ENCFF191LQC.bam bam (alignments) 3.9 GB
ENCFF197IVT.bigWig bigWig (minus strand signal of all reads) 90.1 MB
ENCFF210USN.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF211LFY.tsv tsv (differential expression quantifications) 4.3 MB
ENCFF218GLB.tsv tsv (gene quantifications) 9.4 MB
ENCFF220GOE.bigWig bigWig (plus strand signal of all reads) 91.2 MB
ENCFF221TDK.bigWig bigWig (minus strand signal of unique reads) 88.9 MB
ENCFF232GDT.bam bam (alignments) 3.2 GB
ENCFF246LEX.bigWig bigWig (minus strand signal of all reads) 85.8 MB
ENCFF252HRO.tar tar (differential splicing quantifications) 16.0 MB
ENCFF254USK.bam bam (transcriptome alignments) 4.4 GB
ENCFF278GUL.bigWig bigWig (minus strand signal of all reads) 94.1 MB
ENCFF287MTV.bigWig bigWig (minus strand signal of all reads) 80.7 MB
ENCFF300WLJ.tsv tsv (differential expression quantifications) 2.8 MB
ENCFF305QET.bam bam (alignments) 3.0 GB
ENCFF313ADT.fastq fastq (reads) 2.0 GB
ENCFF322GYX.bigWig bigWig (plus strand signal of all reads) 93.3 MB
ENCFF340KUB.bam bam (transcriptome alignments) 5.1 GB
ENCFF362EDY.bigWig bigWig (plus strand signal of unique reads) 82.2 MB
ENCFF387JGD.bigWig bigWig (plus strand signal of unique reads) 75.5 MB
ENCFF399EQC.bam bam (transcriptome alignments) 4.7 GB
ENCFF402OQM.tsv tsv (transcript quantifications) 25.3 MB
ENCFF420FFM.bigWig bigWig (minus strand signal of unique reads) 78.5 MB
ENCFF449NKF.bigWig bigWig (minus strand signal of unique reads) 84.7 MB
ENCFF468WCK.bigWig bigWig (minus strand signal of unique reads) 82.6 MB
ENCFF470IYV.tsv tsv (gene quantifications) 9.1 MB
ENCFF473NIZ.bigWig bigWig (plus strand signal of unique reads) 91.4 MB
ENCFF499YOG.bigWig bigWig (plus strand signal of all reads) 87.4 MB
ENCFF501BWJ.bam bam (transcriptome alignments) 4.7 GB
ENCFF504HXH.bigWig bigWig (minus strand signal of all reads) 91.7 MB
ENCFF507PQL.bam bam (alignments) 3.6 GB
ENCFF513ATI.bam bam (alignments) 2.9 GB
ENCFF526BFV.bigWig bigWig (plus strand signal of all reads) 103.1 MB
ENCFF543BLQ.bigWig bigWig (plus strand signal of unique reads) 85.5 MB
ENCFF544FLF.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF545XDA.tsv tsv (transcript quantifications) 24.9 MB
ENCFF546WZB.bigWig bigWig (plus strand signal of all reads) 86.1 MB
ENCFF549MLY.bam bam (alignments) 3.1 GB
ENCFF577VLB.bigWig bigWig (plus strand signal of unique reads) 90.9 MB
ENCFF581CRE.bigWig bigWig (minus strand signal of unique reads) 80.0 MB
ENCFF585CUZ.bigWig bigWig (plus strand signal of all reads) 82.2 MB
ENCFF591PKN.tar tar (differential splicing quantifications) 3.9 MB
ENCFF598NCC.bigWig bigWig (plus strand signal of unique reads) 84.3 MB
ENCFF598STL.bam bam (alignments) 3.7 GB
ENCFF612JPD.tsv tsv (transcript quantifications) 27.4 MB
ENCFF631PFE.bam bam (alignments) 2.9 GB
ENCFF634KQH.tsv tsv (transcript quantifications) 25.3 MB
ENCFF641XXC.tsv tsv (transcript quantifications) 27.3 MB
ENCFF665EPI.bigWig bigWig (minus strand signal of all reads) 102.0 MB
ENCFF673VCZ.bigWig bigWig (plus strand signal of unique reads) 86.8 MB
ENCFF693KHD.bigWig bigWig (minus strand signal of unique reads) 78.1 MB
ENCFF721UUP.bigWig bigWig (minus strand signal of all reads) 94.1 MB
ENCFF732HNQ.bigWig bigWig (plus strand signal of unique reads) 84.3 MB
ENCFF738WTG.tsv tsv (transcript quantifications) 29.8 MB
ENCFF739AOC.bigWig bigWig (minus strand signal of all reads) 101.9 MB
ENCFF741IXD.bigWig bigWig (plus strand signal of unique reads) 85.5 MB
ENCFF776HWW.fastq fastq (reads) 2.0 GB
ENCFF788HVH.bam bam (transcriptome alignments) 4.4 GB
ENCFF794CVB.bigWig bigWig (minus strand signal of unique reads) 83.5 MB
ENCFF795IKB.bigWig bigWig (minus strand signal of unique reads) 73.5 MB
ENCFF800VCE.bam bam (alignments) 3.8 GB
ENCFF825OIW.bam bam (alignments) 3.1 GB
ENCFF855HVT.bigWig bigWig (minus strand signal of unique reads) 83.5 MB
ENCFF863MVV.bigWig bigWig (plus strand signal of all reads) 103.1 MB
ENCFF872MAF.bam bam (transcriptome alignments) 5.4 GB
ENCFF877TVY.tsv tsv (gene quantifications) 10.4 MB
ENCFF877WCQ.bigWig bigWig (minus strand signal of all reads) 85.1 MB
ENCFF883CMP.bigWig bigWig (minus strand signal of all reads) 99.4 MB
ENCFF883UGT.tsv tsv (gene quantifications) 10.4 MB
ENCFF895PIK.bigWig bigWig (plus strand signal of unique reads) 90.5 MB
ENCFF896JOH.bigWig bigWig (plus strand signal of all reads) 95.3 MB
ENCFF908ARI.bigWig bigWig (plus strand signal of unique reads) 80.3 MB
ENCFF919VBZ.tsv tsv (gene quantifications) 9.1 MB
ENCFF926DZS.fastq fastq (reads) 2.2 GB
ENCFF933VGD.bigWig bigWig (plus strand signal of all reads) 94.0 MB
ENCFF945NCG.bigWig bigWig (minus strand signal of all reads) 87.6 MB
ENCFF949DDQ.bigWig bigWig (minus strand signal of unique reads) 89.3 MB
ENCFF951MGW.tsv tsv (differential expression quantifications) 2.0 MB
ENCFF952VZE.fastq fastq (reads) 2.1 GB
ENCFF954SIO.bigWig bigWig (plus strand signal of all reads) 95.3 MB
ENCFF957TZG.tsv tsv (transcript quantifications) 24.9 MB
ENCFF981XDR.bigWig bigWig (plus strand signal of unique reads) 80.2 MB
ENCFF997LNK.bigWig bigWig (minus strand signal of all reads) 92.8 MB
ENCFF998EYK.bigWig bigWig (minus strand signal of unique reads) 88.5 MB
ENCSR496ETJ ENCSR · via encode_api

RNA-seq on HepG2 cells treated with an shRNA knockdown against PES1. (PES1_BGHLV31)

Homo sapiens

92 data files
FileTypeSize
ENCFF011CNH.bigWig bigWig (minus strand signal of all reads) 78.4 MB
ENCFF015IXW.bam bam (transcriptome alignments) 5.1 GB
ENCFF024DGG.bigWig bigWig (minus strand signal of all reads) 74.6 MB
ENCFF038BIM.bigWig bigWig (plus strand signal of unique reads) 76.5 MB
ENCFF039IMU.bigWig bigWig (minus strand signal of all reads) 75.1 MB
ENCFF043BCI.fastq fastq (reads) 2.1 GB
ENCFF043XIO.bigWig bigWig (plus strand signal of unique reads) 78.4 MB
ENCFF048PJQ.bigWig bigWig (minus strand signal of unique reads) 74.4 MB
ENCFF061TVC.bigWig bigWig (plus strand signal of unique reads) 74.8 MB
ENCFF081TIC.tsv tsv (transcript quantifications) 24.9 MB
ENCFF107TWP.bigWig bigWig (minus strand signal of unique reads) 72.6 MB
ENCFF114GSE.bigWig bigWig (minus strand signal of unique reads) 76.3 MB
ENCFF123VKN.bigWig bigWig (minus strand signal of all reads) 84.4 MB
ENCFF132IZD.bigWig bigWig (plus strand signal of unique reads) 70.2 MB
ENCFF134ZXM.tsv tsv (transcript quantifications) 24.9 MB
ENCFF136ELI.tsv tsv (gene quantifications) 10.4 MB
ENCFF146HKV.bigWig bigWig (plus strand signal of all reads) 82.9 MB
ENCFF154HGX.fastq fastq (reads) 2.3 GB
ENCFF156EWA.tsv tsv (differential expression quantifications) 4.1 MB
ENCFF174GQZ.bam bam (alignments) 3.8 GB
ENCFF174WQN.bam bam (transcriptome alignments) 5.1 GB
ENCFF204NQO.bigWig bigWig (minus strand signal of all reads) 84.4 MB
ENCFF206WVG.bigWig bigWig (minus strand signal of unique reads) 76.2 MB
ENCFF214CDO.bigWig bigWig (plus strand signal of all reads) 84.6 MB
ENCFF214ZYC.bam bam (alignments) 3.1 GB
ENCFF224KUI.bigWig bigWig (minus strand signal of unique reads) 69.9 MB
ENCFF265ENQ.tsv tsv (transcript quantifications) 29.8 MB
ENCFF271COV.tsv tsv (differential expression quantifications) 2.0 MB
ENCFF276QCK.bam bam (alignments) 3.0 GB
ENCFF277IDU.tsv tsv (gene quantifications) 9.1 MB
ENCFF306JAY.bam bam (transcriptome alignments) 6.4 GB
ENCFF309HHT.bigWig bigWig (minus strand signal of unique reads) 71.5 MB
ENCFF320NJE.bigWig bigWig (minus strand signal of unique reads) 68.2 MB
ENCFF327BAU.bam bam (transcriptome alignments) 5.5 GB
ENCFF333LCM.bam bam (alignments) 3.6 GB
ENCFF368BEY.bigWig bigWig (plus strand signal of all reads) 77.8 MB
ENCFF368VGD.tsv tsv (transcript quantifications) 25.3 MB
ENCFF369AFY.tsv tsv (gene quantifications) 9.5 MB
ENCFF373EYC.bigWig bigWig (minus strand signal of unique reads) 70.4 MB
ENCFF425ISX.tsv tsv (transcript quantifications) 27.3 MB
ENCFF451MYP.bigWig bigWig (plus strand signal of all reads) 74.6 MB
ENCFF478XWK.bigWig bigWig (minus strand signal of unique reads) 76.2 MB
ENCFF478XXU.bigWig bigWig (plus strand signal of all reads) 76.3 MB
ENCFF486NWZ.tsv tsv (gene quantifications) 9.5 MB
ENCFF486WDT.tsv tsv (gene quantifications) 10.4 MB
ENCFF487JPD.bigWig bigWig (minus strand signal of all reads) 72.8 MB
ENCFF490LLK.bigWig bigWig (minus strand signal of all reads) 83.0 MB
ENCFF511QHO.bigWig bigWig (plus strand signal of unique reads) 76.5 MB
ENCFF519ZGZ.bigWig bigWig (minus strand signal of unique reads) 70.9 MB
ENCFF525YRL.fastq fastq (reads) 2.1 GB
ENCFF532SAD.bigWig bigWig (plus strand signal of unique reads) 72.9 MB
ENCFF543IVO.bigWig bigWig (plus strand signal of unique reads) 78.4 MB
ENCFF544SXC.tar tar (differential splicing quantifications) 3.9 MB
ENCFF553OZS.tsv tsv (transcript quantifications) 27.3 MB
ENCFF563XZD.tsv tsv (transcript quantifications) 29.8 MB
ENCFF575LGG.bam bam (alignments) 3.2 GB
ENCFF588KSK.bigWig bigWig (plus strand signal of all reads) 86.1 MB
ENCFF635AKU.bam bam (transcriptome alignments) 5.9 GB
ENCFF640WGG.bigWig bigWig (minus strand signal of all reads) 84.4 MB
ENCFF678LXX.bam bam (alignments) 3.1 GB
ENCFF679MQN.tar tar (differential splicing quantifications) 17.0 MB
ENCFF682FAA.fastq fastq (reads) 2.3 GB
ENCFF691BSD.bigWig bigWig (minus strand signal of all reads) 76.3 MB
ENCFF749HWO.bigWig bigWig (plus strand signal of unique reads) 78.4 MB
ENCFF750NKF.bam bam (alignments) 4.0 GB
ENCFF770IQJ.bigWig bigWig (plus strand signal of all reads) 80.1 MB
ENCFF772HSB.bigWig bigWig (plus strand signal of all reads) 86.1 MB
ENCFF782YZP.bigWig bigWig (plus strand signal of all reads) 84.6 MB
ENCFF801LBC.bigWig bigWig (minus strand signal of all reads) 83.0 MB
ENCFF803KIH.bigWig bigWig (minus strand signal of unique reads) 74.4 MB
ENCFF804VPG.tar tar (differential splicing quantifications) 3.2 MB
ENCFF812AEQ.bam bam (alignments) 3.8 GB
ENCFF817DZZ.bigWig bigWig (minus strand signal of unique reads) 74.4 MB
ENCFF819NTJ.bigWig bigWig (minus strand signal of all reads) 75.5 MB
ENCFF855RCW.bigWig bigWig (plus strand signal of all reads) 85.9 MB
ENCFF868ILX.bigWig bigWig (plus strand signal of unique reads) 72.2 MB
ENCFF870JSU.bigWig bigWig (minus strand signal of all reads) 81.5 MB
ENCFF875XYO.tsv tsv (differential expression quantifications) 1.8 MB
ENCFF879INN.bam bam (transcriptome alignments) 5.6 GB
ENCFF884ZPW.bigWig bigWig (plus strand signal of all reads) 77.0 MB
ENCFF895CFY.tsv tsv (differential expression quantifications) 2.8 MB
ENCFF906CAC.bam bam (alignments) 4.0 GB
ENCFF909OIF.bigWig bigWig (plus strand signal of unique reads) 73.4 MB
ENCFF912OAO.bam bam (alignments) 3.0 GB
ENCFF912PJU.bigWig bigWig (plus strand signal of unique reads) 72.3 MB
ENCFF914CZH.bigWig bigWig (plus strand signal of unique reads) 76.5 MB
ENCFF924YCA.bam bam (alignments) 3.1 GB
ENCFF930YMG.tsv tsv (transcript quantifications) 25.3 MB
ENCFF962OOR.tsv tsv (differential expression quantifications) 5.5 MB
ENCFF963UYC.tsv tsv (gene quantifications) 9.1 MB
ENCFF964PAH.bam bam (alignments) 3.8 GB
ENCFF984MHR.bigWig bigWig (plus strand signal of all reads) 76.6 MB
ENCSR878HWU ENCSR · via encode_api

eCLIP control experiment on HepG2 against EFTUD2

Homo sapiens

8 data files
FileTypeSize
ENCFF056AWB.bam bam (alignments) 828.7 MB
ENCFF131PIV.bigWig bigWig (plus strand signal of unique reads) 35.5 MB
ENCFF348XHW.bigWig bigWig (minus strand signal of unique reads) 36.0 MB
ENCFF427MYH.bigWig bigWig (plus strand signal of unique reads) 36.1 MB
ENCFF671ZYB.fastq fastq (reads) 744.9 MB
ENCFF723JLV.bam bam (alignments) 845.6 MB
ENCFF826QWS.fastq fastq (reads) 789.1 MB
ENCFF864HJS.bigWig bigWig (minus strand signal of unique reads) 35.4 MB
ENCSR638YHN ENCSR · via encode_api

eCLIP control experiment on HepG2 against GRSF1

Homo sapiens

8 data files
FileTypeSize
ENCFF015RNL.fastq fastq (reads) 489.5 MB
ENCFF073MFR.bam bam (alignments) 328.4 MB
ENCFF172RGZ.bigWig bigWig (plus strand signal of unique reads) 16.2 MB
ENCFF174GAK.bigWig bigWig (minus strand signal of unique reads) 15.8 MB
ENCFF229LHL.bam bam (alignments) 336.4 MB
ENCFF277VRQ.bigWig bigWig (plus strand signal of unique reads) 16.5 MB
ENCFF632IKX.fastq fastq (reads) 448.6 MB
ENCFF865DDM.bigWig bigWig (minus strand signal of unique reads) 16.2 MB
ENCSR000SKS ENCSR · via encode_api

RNA-seq on HepG2 cells treated with a CRISPR gRNA against RPLP0. (RPLP0_BGHcLV03)

Homo sapiens

92 data files
FileTypeSize
ENCFF003UOW.bam bam (alignments) 3.5 GB
ENCFF013HMB.bigWig bigWig (plus strand signal of unique reads) 69.1 MB
ENCFF046RFI.tsv tsv (transcript quantifications) 24.9 MB
ENCFF047CUT.bigWig bigWig (plus strand signal of unique reads) 80.1 MB
ENCFF063DOE.bam bam (alignments) 3.0 GB
ENCFF076YDC.tsv tsv (transcript quantifications) 29.8 MB
ENCFF078CAG.bam bam (alignments) 3.7 GB
ENCFF094BWU.bigWig bigWig (minus strand signal of all reads) 87.3 MB
ENCFF097UGS.bam bam (alignments) 3.4 GB
ENCFF111OSU.bigWig bigWig (minus strand signal of unique reads) 72.1 MB
ENCFF123GER.bigWig bigWig (plus strand signal of unique reads) 73.8 MB
ENCFF125WTY.tsv tsv (gene quantifications) 9.4 MB
ENCFF126RPY.bam bam (alignments) 3.0 GB
ENCFF135BPE.bam bam (alignments) 3.6 GB
ENCFF148CLL.bam bam (alignments) 3.7 GB
ENCFF150RVQ.bigWig bigWig (plus strand signal of unique reads) 73.6 MB
ENCFF154SQP.bigWig bigWig (plus strand signal of unique reads) 80.2 MB
ENCFF157CIE.tsv tsv (differential expression quantifications) 5.6 MB
ENCFF159FVC.bigWig bigWig (plus strand signal of unique reads) 73.1 MB
ENCFF211RRY.bigWig bigWig (minus strand signal of unique reads) 73.8 MB
ENCFF215ISD.fastq fastq (reads) 2.1 GB
ENCFF233IHG.bigWig bigWig (plus strand signal of all reads) 78.4 MB
ENCFF236IMO.tsv tsv (transcript quantifications) 27.4 MB
ENCFF256GEY.bigWig bigWig (plus strand signal of all reads) 81.8 MB
ENCFF269FNL.bigWig bigWig (minus strand signal of all reads) 78.7 MB
ENCFF303ZTL.bigWig bigWig (minus strand signal of unique reads) 73.8 MB
ENCFF373CLA.bigWig bigWig (plus strand signal of all reads) 88.6 MB
ENCFF387UDY.bigWig bigWig (plus strand signal of all reads) 75.8 MB
ENCFF413SIR.bigWig bigWig (plus strand signal of unique reads) 70.3 MB
ENCFF424ASO.bigWig bigWig (minus strand signal of unique reads) 67.7 MB
ENCFF491IQF.bigWig bigWig (minus strand signal of unique reads) 65.4 MB
ENCFF524YQR.bigWig bigWig (minus strand signal of unique reads) 77.4 MB
ENCFF526YWH.tsv tsv (transcript quantifications) 25.3 MB
ENCFF533GMI.bigWig bigWig (plus strand signal of unique reads) 66.9 MB
ENCFF534ISO.bam bam (transcriptome alignments) 5.7 GB
ENCFF540YPZ.fastq fastq (reads) 2.4 GB
ENCFF573CGT.tsv tsv (transcript quantifications) 24.9 MB
ENCFF584XVZ.bigWig bigWig (minus strand signal of all reads) 77.1 MB
ENCFF589FWV.fastq fastq (reads) 2.4 GB
ENCFF605NEB.bigWig bigWig (minus strand signal of all reads) 80.4 MB
ENCFF621JOA.bigWig bigWig (minus strand signal of all reads) 80.7 MB
ENCFF624ZUO.bigWig bigWig (minus strand signal of unique reads) 72.0 MB
ENCFF626LZZ.bigWig bigWig (plus strand signal of all reads) 88.7 MB
ENCFF633BFE.bigWig bigWig (minus strand signal of all reads) 70.2 MB
ENCFF634GVX.bam bam (transcriptome alignments) 4.9 GB
ENCFF641IGT.bam bam (alignments) 3.0 GB
ENCFF644JIA.tar tar (differential splicing quantifications) 4.8 MB
ENCFF647MRE.bigWig bigWig (minus strand signal of all reads) 80.6 MB
ENCFF648IBB.tsv tsv (transcript quantifications) 27.4 MB
ENCFF659GWR.bigWig bigWig (plus strand signal of all reads) 79.9 MB
ENCFF671RTG.bigWig bigWig (minus strand signal of all reads) 79.7 MB
ENCFF683PZA.bigWig bigWig (plus strand signal of unique reads) 75.6 MB
ENCFF686USN.bigWig bigWig (plus strand signal of all reads) 80.6 MB
ENCFF697ZIA.tsv tsv (transcript quantifications) 25.3 MB
ENCFF698XUF.bam bam (transcriptome alignments) 5.6 GB
ENCFF724LQI.tsv tsv (gene quantifications) 9.5 MB
ENCFF724YJK.bigWig bigWig (minus strand signal of unique reads) 72.0 MB
ENCFF732MJQ.tsv tsv (differential expression quantifications) 4.5 MB
ENCFF732ZKL.bigWig bigWig (minus strand signal of unique reads) 78.3 MB
ENCFF745WMO.bigWig bigWig (plus strand signal of unique reads) 75.5 MB
ENCFF769WAA.tsv tsv (gene quantifications) 9.1 MB
ENCFF772GUB.bigWig bigWig (minus strand signal of all reads) 72.3 MB
ENCFF786TVM.bigWig bigWig (minus strand signal of all reads) 87.1 MB
ENCFF795PHK.bam bam (transcriptome alignments) 4.8 GB
ENCFF807ACW.tar tar (differential splicing quantifications) 16.3 MB
ENCFF809HUE.tsv tsv (gene quantifications) 10.4 MB
ENCFF816QYG.bigWig bigWig (minus strand signal of unique reads) 68.8 MB
ENCFF817ALR.tsv tsv (differential expression quantifications) 2.9 MB
ENCFF820CFG.bam bam (transcriptome alignments) 5.5 GB
ENCFF827AVT.fastq fastq (reads) 2.1 GB
ENCFF837IBQ.bigWig bigWig (plus strand signal of all reads) 71.3 MB
ENCFF839ZMT.bam bam (alignments) 4.1 GB
ENCFF847VDX.tsv tsv (differential expression quantifications) 1.7 MB
ENCFF860NRK.bam bam (transcriptome alignments) 6.5 GB
ENCFF866SKC.tsv tsv (gene quantifications) 9.1 MB
ENCFF877LJD.tsv tsv (transcript quantifications) 29.8 MB
ENCFF884SHI.bam bam (alignments) 4.3 GB
ENCFF885LTV.bigWig bigWig (plus strand signal of all reads) 81.8 MB
ENCFF895EMR.bigWig bigWig (minus strand signal of unique reads) 78.2 MB
ENCFF903VIQ.tsv tsv (gene quantifications) 10.4 MB
ENCFF906SME.bigWig bigWig (minus strand signal of all reads) 87.3 MB
ENCFF913LNK.tsv tsv (differential expression quantifications) 2.0 MB
ENCFF919DKR.bigWig bigWig (plus strand signal of unique reads) 79.3 MB
ENCFF922JYA.bigWig bigWig (minus strand signal of all reads) 74.6 MB
ENCFF930DTE.tar tar (differential splicing quantifications) 3.6 MB
ENCFF935VCV.bigWig bigWig (plus strand signal of all reads) 81.8 MB
ENCFF944KFM.bigWig bigWig (plus strand signal of all reads) 88.2 MB
ENCFF966EXF.bigWig bigWig (plus strand signal of unique reads) 73.6 MB
ENCFF968HNL.bigWig bigWig (plus strand signal of all reads) 73.2 MB
ENCFF976NNR.bam bam (alignments) 4.3 GB
ENCFF989YFL.bigWig bigWig (minus strand signal of unique reads) 71.5 MB
ENCFF992YGD.bam bam (alignments) 3.4 GB
ENCSR414RME ENCSR · via encode_api

eCLIP control experiment on HepG2 against RBM5

Homo sapiens

8 data files
FileTypeSize
ENCFF021GAP.fastq fastq (reads) 533.3 MB
ENCFF094MLU.bigWig bigWig (minus strand signal of unique reads) 24.6 MB
ENCFF496ODC.bigWig bigWig (plus strand signal of unique reads) 24.4 MB
ENCFF613LRN.bam bam (alignments) 444.9 MB
ENCFF646LJL.bam bam (alignments) 453.9 MB
ENCFF749SQA.bigWig bigWig (plus strand signal of unique reads) 25.0 MB
ENCFF768UAP.bigWig bigWig (minus strand signal of unique reads) 24.1 MB
ENCFF783GFR.fastq fastq (reads) 612.4 MB
ENCSR825MZS ENCSR · via encode_api

TAF15 ChIP-seq on HepG2

Homo sapiens

62 data files
FileTypeSize
ENCFF019SDP.bam bam (alignments) 553.7 MB
ENCFF020CYV.bigWig bigWig (signal p-value) 1.0 GB
ENCFF032BKA.bigWig bigWig (signal p-value) 915.3 MB
ENCFF046DZK.bam bam (alignments) 553.0 MB
ENCFF061RJA.bigWig bigWig (fold change over control) 484.6 MB
ENCFF076WIF.bigWig bigWig (signal p-value) 828.6 MB
ENCFF081IJX.bigBed bigBed (IDR thresholded peaks) 230.6 KB
ENCFF085HJH.bigWig bigWig (signal p-value) 901.9 MB
ENCFF085QUT.bigWig bigWig (signal p-value) 897.0 MB
ENCFF103IDD.fastq fastq (reads) 2.0 GB
ENCFF110TJN.bigBed bigBed (optimal IDR thresholded peaks) 653.7 KB
ENCFF113SYZ.bed bed (IDR thresholded peaks) 103.9 KB
ENCFF116QSW.bigBed bigBed (optimal IDR thresholded peaks) 655.6 KB
ENCFF137VXT.bed bed (peaks and background as input for IDR) 6.7 MB
ENCFF156XOZ.bam bam (alignments) 519.8 MB
ENCFF158EXB.bam bam (unfiltered alignments) 1.7 GB
ENCFF159TWM.bed bed (IDR ranked peaks) 2.8 MB
ENCFF174ODY.bigWig bigWig (fold change over control) 744.1 MB
ENCFF225HIQ.bigBed bigBed (IDR thresholded peaks) 209.3 KB
ENCFF251TPN.bam bam (alignments) 583.6 MB
ENCFF252UJI.bigBed bigBed (peaks and background as input for IDR) 12.6 MB
ENCFF287BBC.bigBed bigBed (peaks and background as input for IDR) 12.6 MB
ENCFF292SVE.bed bed (peaks and background as input for IDR) 6.7 MB
ENCFF293QPX.bed bed (peaks and background as input for IDR) 5.6 MB
ENCFF302VZC.bam bam (unfiltered alignments) 2.6 GB
ENCFF321XMV.bam bam (alignments) 544.1 MB
ENCFF359WRP.bed bed (peaks and background as input for IDR) 5.9 MB
ENCFF382ELQ.bigWig bigWig (signal p-value) 954.8 MB
ENCFF398JES.bigWig bigWig (fold change over control) 511.2 MB
ENCFF406BOT.bigBed bigBed (conservative IDR thresholded peaks) 631.1 KB
ENCFF418ACX.bam bam (unfiltered alignments) 2.5 GB
ENCFF441XKD.bigWig bigWig (fold change over control) 538.8 MB
ENCFF483HCZ.bed bed (IDR ranked peaks) 5.1 MB
ENCFF490ZAU.bed bed (optimal IDR thresholded peaks) 338.0 KB
ENCFF494TDZ.bigBed bigBed (IDR thresholded peaks) 499.3 KB
ENCFF517BIT.bigWig bigWig (signal p-value) 795.7 MB
ENCFF530XYO.fastq fastq (reads) 611.6 MB
ENCFF581ZUQ.bigWig bigWig (fold change over control) 537.5 MB
ENCFF591OFV.bed bed (IDR ranked peaks) 5.8 MB
ENCFF598BCM.bed bed (IDR thresholded peaks) 234.7 KB
ENCFF602KDK.bed bed (IDR ranked peaks) 2.7 MB
ENCFF626LJK.bigBed bigBed (peaks and background as input for IDR) 12.5 MB
ENCFF627NOR.bam bam (unfiltered alignments) 2.5 GB
ENCFF683TLR.bigWig bigWig (fold change over control) 748.5 MB
ENCFF698PSG.bigWig bigWig (fold change over control) 505.7 MB
ENCFF703CJH.bigWig bigWig (fold change over control) 468.2 MB
ENCFF715SJM.bigWig bigWig (fold change over control) 743.4 MB
ENCFF718RXL.bed bed (optimal IDR thresholded peaks) 338.2 KB
ENCFF726XRN.bigBed bigBed (peaks and background as input for IDR) 12.6 MB
ENCFF747SGR.bigBed bigBed (peaks and background as input for IDR) 12.5 MB
ENCFF759DNX.bam bam (alignments) 520.4 MB
ENCFF762IGQ.bed bed (peaks and background as input for IDR) 5.8 MB
ENCFF840WPW.fastq fastq (reads) 1.1 GB
ENCFF853BNC.bed bed (peaks and background as input for IDR) 5.9 MB
ENCFF868AXQ.bigWig bigWig (signal p-value) 779.6 MB
ENCFF889SKN.bed bed (conservative IDR thresholded peaks) 321.5 KB
ENCFF934JWS.bam bam (unfiltered alignments) 1.7 GB
ENCFF942GBL.bigWig bigWig (signal p-value) 776.1 MB
ENCFF957HCW.fastq fastq (reads) 739.7 MB
ENCFF959AKH.bigBed bigBed (peaks and background as input for IDR) 12.6 MB
ENCFF973TQW.bam bam (unfiltered alignments) 1.7 GB
ENCFF979AYR.bed bed (IDR thresholded peaks) 88.7 KB
ENCSR226KWO ENCSR · via encode_api

Control CRISPR gRNA against no target in K562 cells followed by RNA-seq. (NT_BGKcLV04_B)

Homo sapiens

84 data files
FileTypeSize
ENCFF013IJN.fastq fastq (reads) 3.9 GB
ENCFF024IVJ.bigWig bigWig (minus strand signal of unique reads) 130.0 MB
ENCFF037XHR.bam bam (transcriptome alignments) 9.2 GB
ENCFF041IIW.bam bam (transcriptome alignments) 7.8 GB
ENCFF077IXF.tsv tsv (gene quantifications) 10.4 MB
ENCFF095WBT.bigWig bigWig (minus strand signal of all reads) 140.0 MB
ENCFF113CWY.bigWig bigWig (plus strand signal of all reads) 148.1 MB
ENCFF117LMU.bigWig bigWig (plus strand signal of unique reads) 129.7 MB
ENCFF123PGQ.bigWig bigWig (minus strand signal of unique reads) 126.4 MB
ENCFF126ZIM.bigWig bigWig (plus strand signal of all reads) 144.6 MB
ENCFF145QOP.bigWig bigWig (plus strand signal of all reads) 142.5 MB
ENCFF151KER.tsv tsv (gene quantifications) 9.1 MB
ENCFF153XSX.tsv tsv (transcript quantifications) 29.9 MB
ENCFF160MRA.tsv tsv (transcript quantifications) 25.3 MB
ENCFF169ZFR.bigWig bigWig (minus strand signal of unique reads) 117.3 MB
ENCFF174IYS.bigWig bigWig (minus strand signal of all reads) 129.0 MB
ENCFF190SHS.bigWig bigWig (plus strand signal of unique reads) 133.3 MB
ENCFF221VNM.bam bam (alignments) 7.1 GB
ENCFF234QAP.bigWig bigWig (minus strand signal of unique reads) 114.0 MB
ENCFF241TWG.bigWig bigWig (plus strand signal of unique reads) 121.7 MB
ENCFF243TTS.bigWig bigWig (plus strand signal of all reads) 128.4 MB
ENCFF270BRR.bam bam (alignments) 5.7 GB
ENCFF273PFW.bigWig bigWig (minus strand signal of all reads) 142.2 MB
ENCFF300CJZ.tsv tsv (transcript quantifications) 27.4 MB
ENCFF334IWS.bam bam (alignments) 7.1 GB
ENCFF334QNV.bam bam (transcriptome alignments) 9.1 GB
ENCFF391WNN.bigWig bigWig (minus strand signal of all reads) 126.8 MB
ENCFF420EAR.bigWig bigWig (minus strand signal of unique reads) 125.4 MB
ENCFF432ZMG.fastq fastq (reads) 3.9 GB
ENCFF441IEV.tsv tsv (gene quantifications) 9.1 MB
ENCFF450QRH.tsv tsv (transcript quantifications) 25.3 MB
ENCFF480UFL.tsv tsv (transcript quantifications) 24.9 MB
ENCFF500UAJ.bam bam (alignments) 6.9 GB
ENCFF503QGO.bigWig bigWig (minus strand signal of unique reads) 129.5 MB
ENCFF519UZT.bigWig bigWig (plus strand signal of all reads) 129.0 MB
ENCFF530KBT.bigWig bigWig (plus strand signal of unique reads) 132.5 MB
ENCFF533KFP.bigWig bigWig (minus strand signal of all reads) 130.1 MB
ENCFF538KBA.bigWig bigWig (minus strand signal of unique reads) 125.4 MB
ENCFF549YGO.bigWig bigWig (plus strand signal of unique reads) 122.7 MB
ENCFF568QJU.bigWig bigWig (plus strand signal of unique reads) 117.6 MB
ENCFF584SVI.bigWig bigWig (minus strand signal of all reads) 142.2 MB
ENCFF604FCK.bigWig bigWig (minus strand signal of unique reads) 121.8 MB
ENCFF609KRC.bigWig bigWig (plus strand signal of unique reads) 128.9 MB
ENCFF611RKG.bam bam (alignments) 5.6 GB
ENCFF613IBA.tsv tsv (transcript quantifications) 24.9 MB
ENCFF617SQX.tsv tsv (transcript quantifications) 29.9 MB
ENCFF620GZF.bam bam (alignments) 7.1 GB
ENCFF626MPH.tsv tsv (gene quantifications) 9.5 MB
ENCFF632ZGI.bigWig bigWig (plus strand signal of all reads) 133.0 MB
ENCFF650KTP.tsv tsv (transcript quantifications) 27.4 MB
ENCFF665HAX.bigWig bigWig (minus strand signal of unique reads) 118.7 MB
ENCFF675DEH.bigWig bigWig (plus strand signal of unique reads) 125.0 MB
ENCFF691JOG.bigWig bigWig (plus strand signal of all reads) 132.5 MB
ENCFF705IJW.bam bam (alignments) 5.5 GB
ENCFF727IFM.bigWig bigWig (plus strand signal of all reads) 147.6 MB
ENCFF727XWL.bam bam (alignments) 7.1 GB
ENCFF730KOM.tsv tsv (gene quantifications) 9.5 MB
ENCFF733OWJ.bigWig bigWig (minus strand signal of all reads) 145.5 MB
ENCFF756QBL.bigWig bigWig (minus strand signal of all reads) 125.2 MB
ENCFF761TKP.bam bam (transcriptome alignments) 7.9 GB
ENCFF762DZQ.bigWig bigWig (plus strand signal of unique reads) 133.6 MB
ENCFF763GBK.bigWig bigWig (plus strand signal of unique reads) 127.1 MB
ENCFF777YXL.bigWig bigWig (minus strand signal of all reads) 133.2 MB
ENCFF779MXD.tsv tsv (gene quantifications) 10.4 MB
ENCFF804CSA.bam bam (alignments) 6.8 GB
ENCFF804DNX.bigWig bigWig (minus strand signal of all reads) 145.4 MB
ENCFF809BDG.bigWig bigWig (minus strand signal of all reads) 144.9 MB
ENCFF822WNV.bam bam (alignments) 5.5 GB
ENCFF835ATD.bigWig bigWig (plus strand signal of all reads) 136.4 MB
ENCFF840VAD.bigWig bigWig (plus strand signal of unique reads) 128.6 MB
ENCFF868HTD.bigWig bigWig (minus strand signal of all reads) 130.3 MB
ENCFF886OOG.bigWig bigWig (plus strand signal of all reads) 132.7 MB
ENCFF893DSH.bigWig bigWig (plus strand signal of all reads) 148.0 MB
ENCFF901BSH.bam bam (alignments) 5.6 GB
ENCFF902FYU.bigWig bigWig (plus strand signal of unique reads) 120.7 MB
ENCFF908MJE.bam bam (transcriptome alignments) 7.9 GB
ENCFF913HPT.fastq fastq (reads) 3.9 GB
ENCFF916HUV.bigWig bigWig (minus strand signal of unique reads) 123.4 MB
ENCFF927CUY.fastq fastq (reads) 3.8 GB
ENCFF939OSO.bigWig bigWig (minus strand signal of unique reads) 129.0 MB
ENCFF964LED.bigWig bigWig (minus strand signal of unique reads) 118.7 MB
ENCFF965EPO.bam bam (transcriptome alignments) 8.0 GB
ENCFF983NBQ.bam bam (alignments) 5.6 GB
ENCFF992WLI.bigWig bigWig (plus strand signal of all reads) 144.6 MB
ENCSR934TDK ENCSR · via encode_api

RNA Bind-n-Seq (RBNS) pulldown experiment against A1CF

13 data files
FileTypeSize
ENCFF017ISP.tsv tsv (library fraction) 64.4 KB
ENCFF107SCR.tsv tsv (library fraction) 265.0 KB
ENCFF187MDO.fastq fastq (reads) 386.0 MB
ENCFF194FOG.fastq fastq (reads) 639.5 MB
ENCFF274IJN.fastq fastq (reads) 516.0 MB
ENCFF305UGG.fastq fastq (reads) 385.9 MB
ENCFF630YWR.tsv tsv (library fraction) 15.5 KB
ENCFF672ZPY.tsv tsv (enrichment) 10.0 KB
ENCFF708DPS.tsv tsv (library fraction) 1.1 MB
ENCFF884QIH.fastq fastq (reads) 656.2 MB
ENCFF902SNR.tsv tsv (enrichment) 688.0 KB
ENCFF921OBL.tsv tsv (enrichment) 168.0 KB
ENCFF943MNY.tsv tsv (enrichment) 41.0 KB
ENCSR690GUG ENCSR · via encode_api

U2AF1 ChIP-seq in K562

Homo sapiens

64 data files
FileTypeSize
ENCFF004KLH.bam bam (unfiltered alignments) 953.5 MB
ENCFF007RRZ.bigBed bigBed (conservative IDR thresholded peaks) 184.8 KB
ENCFF010TVY.bam bam (alignments) 529.0 MB
ENCFF057SMG.bam bam (alignments) 576.8 MB
ENCFF060WEG.bigWig bigWig (fold change over control) 458.7 MB
ENCFF069LAT.bigBed bigBed (conservative IDR thresholded peaks) 187.3 KB
ENCFF074NKR.bigWig bigWig (signal p-value) 395.4 MB
ENCFF084VEW.bigWig bigWig (fold change over control) 744.3 MB
ENCFF091BCJ.bed bed (IDR ranked peaks) 1.8 MB
ENCFF129HHS.bigBed bigBed (peaks and background as input for IDR) 12.6 MB
ENCFF157FXZ.bigWig bigWig (signal p-value) 469.9 MB
ENCFF192YZO.bam bam (unfiltered alignments) 1.1 GB
ENCFF203ABU.bam bam (alignments) 577.5 MB
ENCFF203JZC.bed bed (IDR ranked peaks) 3.2 MB
ENCFF209UZT.bigWig bigWig (fold change over control) 708.2 MB
ENCFF222PVF.bam bam (alignments) 529.6 MB
ENCFF244ZPN.bam bam (unfiltered alignments) 946.5 MB
ENCFF251STL.bed bed (peaks and background as input for IDR) 5.0 MB
ENCFF256TIZ.bam bam (unfiltered alignments) 1.1 GB
ENCFF309SSK.bed bed (IDR thresholded peaks) 34.0 KB
ENCFF313KEK.bigWig bigWig (signal p-value) 611.0 MB
ENCFF335XBA.bigBed bigBed (optimal IDR thresholded peaks) 204.5 KB
ENCFF342ZVG.bed bed (conservative IDR thresholded peaks) 71.0 KB
ENCFF345IQA.bigWig bigWig (signal p-value) 405.9 MB
ENCFF391ZQG.bed bed (IDR ranked peaks) 1.5 MB
ENCFF403XWW.bigWig bigWig (signal p-value) 587.1 MB
ENCFF413JEY.bed bed (peaks and background as input for IDR) 6.3 MB
ENCFF417XQM.bigBed bigBed (peaks and background as input for IDR) 12.8 MB
ENCFF421IKZ.bam bam (alignments) 590.9 MB
ENCFF447BFV.bigBed bigBed (peaks and background as input for IDR) 12.6 MB
ENCFF473NOQ.bed bed (peaks and background as input for IDR) 6.4 MB
ENCFF474MHB.bigBed bigBed (IDR thresholded peaks) 111.6 KB
ENCFF482DRO.bed bed (optimal IDR thresholded peaks) 81.0 KB
ENCFF498TJC.bigBed bigBed (peaks and background as input for IDR) 12.8 MB
ENCFF503XOK.bed bed (IDR thresholded peaks) 79.6 KB
ENCFF542IUY.bam bam (unfiltered alignments) 1.1 GB
ENCFF542VLD.bigWig bigWig (fold change over control) 425.2 MB
ENCFF546KPY.bigBed bigBed (IDR thresholded peaks) 201.3 KB
ENCFF552CCU.bigWig bigWig (fold change over control) 339.3 MB
ENCFF580PSR.bam bam (unfiltered alignments) 949.9 MB
ENCFF582GZQ.fastq fastq (reads) 855.6 MB
ENCFF620FYM.bigBed bigBed (conservative IDR thresholded peaks) 204.9 KB
ENCFF649HOI.bed bed (IDR ranked peaks) 3.1 MB
ENCFF658SVX.bed bed (peaks and background as input for IDR) 5.1 MB
ENCFF664XDO.bigBed bigBed (peaks and background as input for IDR) 12.6 MB
ENCFF681AZR.bigWig bigWig (fold change over control) 339.4 MB
ENCFF730URE.bed bed (optimal IDR thresholded peaks) 80.2 KB
ENCFF749TGL.bigWig bigWig (fold change over control) 308.9 MB
ENCFF750FVG.bigWig bigWig (fold change over control) 307.6 MB
ENCFF752DQV.bed bed (conservative IDR thresholded peaks) 81.9 KB
ENCFF756ZWM.bigBed bigBed (IDR thresholded peaks) 105.2 KB
ENCFF757WYD.bam bam (alignments) 541.3 MB
ENCFF761ITN.bed bed (conservative IDR thresholded peaks) 70.9 KB
ENCFF763NYG.bed bed (peaks and background as input for IDR) 4.9 MB
ENCFF763QWR.bigBed bigBed (optimal IDR thresholded peaks) 200.7 KB
ENCFF773JAL.bigWig bigWig (signal p-value) 716.0 MB
ENCFF780OBN.bigWig bigWig (signal p-value) 831.6 MB
ENCFF843IKA.bigWig bigWig (signal p-value) 403.6 MB
ENCFF871VOL.fastq fastq (reads) 741.9 MB
ENCFF919KKD.bigWig bigWig (signal p-value) 873.4 MB
ENCFF925DHZ.bigWig bigWig (fold change over control) 708.3 MB
ENCFF948OFI.bed bed (peaks and background as input for IDR) 5.1 MB
ENCFF960XVZ.bigBed bigBed (peaks and background as input for IDR) 12.6 MB
ENCFF977WUQ.bed bed (IDR thresholded peaks) 27.3 KB
ENCSR243LNQ ENCSR · via encode_api

PRPF4 ChIP-seq on HepG2

Homo sapiens

66 data files
FileTypeSize
ENCFF024YWA.bed bed (IDR ranked peaks) 1.5 MB
ENCFF059CKF.bigWig bigWig (fold change over control) 671.1 MB
ENCFF108VEJ.fastq fastq (reads) 1.6 GB
ENCFF117EFY.bigWig bigWig (signal p-value) 655.8 MB
ENCFF142SFP.bed bed (peaks and background as input for IDR) 5.0 MB
ENCFF176BKZ.bigBed bigBed (IDR thresholded peaks) 93.4 KB
ENCFF181JAW.bam bam (unfiltered alignments) 1.5 GB
ENCFF189EKJ.bigWig bigWig (fold change over control) 446.9 MB
ENCFF199LCL.bigBed bigBed (peaks and background as input for IDR) 12.7 MB
ENCFF218HKO.bam bam (alignments) 524.0 MB
ENCFF239MYP.bigWig bigWig (signal p-value) 620.1 MB
ENCFF245ERJ.bigBed bigBed (peaks and background as input for IDR) 12.7 MB
ENCFF254TJR.bigBed bigBed (peaks and background as input for IDR) 10.4 MB
ENCFF255FHE.bam bam (unfiltered alignments) 2.2 GB
ENCFF272TLP.bam bam (unfiltered alignments) 1.5 GB
ENCFF277OCN.bigBed bigBed (peaks and background as input for IDR) 10.4 MB
ENCFF293GKY.fastq fastq (reads) 972.1 MB
ENCFF306RZC.fastq fastq (reads) 635.3 MB
ENCFF308QFT.bed bed (conservative IDR thresholded peaks) 66.8 KB
ENCFF325LSO.bigWig bigWig (signal p-value) 681.9 MB
ENCFF334YZU.bigWig bigWig (signal p-value) 654.8 MB
ENCFF347QOD.bigWig bigWig (fold change over control) 440.7 MB
ENCFF356JET.bigWig bigWig (signal p-value) 678.3 MB
ENCFF373EVI.bam bam (unfiltered alignments) 1.4 GB
ENCFF375RAU.bigBed bigBed (peaks and background as input for IDR) 10.4 MB
ENCFF385HAD.bed bed (conservative IDR thresholded peaks) 67.2 KB
ENCFF431ZRN.bigBed bigBed (optimal IDR thresholded peaks) 184.5 KB
ENCFF436QGN.bed bed (IDR ranked peaks) 3.4 MB
ENCFF447JRJ.bed bed (peaks and background as input for IDR) 4.8 MB
ENCFF458TQI.bigBed bigBed (conservative IDR thresholded peaks) 179.0 KB
ENCFF460EPI.bed bed (peaks and background as input for IDR) 4.8 MB
ENCFF486LMT.bam bam (unfiltered alignments) 2.1 GB
ENCFF501NHW.bed bed (optimal IDR thresholded peaks) 70.8 KB
ENCFF509SNQ.bigBed bigBed (conservative IDR thresholded peaks) 179.9 KB
ENCFF535QFN.bigWig bigWig (fold change over control) 668.6 MB
ENCFF536CSM.bed bed (IDR thresholded peaks) 26.5 KB
ENCFF540SFH.bigBed bigBed (optimal IDR thresholded peaks) 185.2 KB
ENCFF542MVV.bam bam (alignments) 492.6 MB
ENCFF575PHF.bigWig bigWig (fold change over control) 419.0 MB
ENCFF581JYC.bigWig bigWig (fold change over control) 416.7 MB
ENCFF620PEH.bigWig bigWig (signal p-value) 670.0 MB
ENCFF636WWO.bed bed (peaks and background as input for IDR) 5.9 MB
ENCFF645WCL.bigBed bigBed (IDR thresholded peaks) 181.7 KB
ENCFF655VZE.bam bam (alignments) 493.4 MB
ENCFF663BFI.bigWig bigWig (fold change over control) 436.9 MB
ENCFF681DZN.bed bed (IDR ranked peaks) 3.1 MB
ENCFF688BWE.bam bam (alignments) 568.8 MB
ENCFF692TRI.bed bed (IDR thresholded peaks) 67.4 KB
ENCFF719VLD.bed bed (conservative IDR thresholded peaks) 66.1 KB
ENCFF728YOO.bam bam (alignments) 523.2 MB
ENCFF765SIL.bed bed (peaks and background as input for IDR) 6.0 MB
ENCFF769MBT.fastq fastq (reads) 674.4 MB
ENCFF774ZZA.bigWig bigWig (signal p-value) 726.5 MB
ENCFF780LTM.bigBed bigBed (peaks and background as input for IDR) 10.4 MB
ENCFF789WRG.bigBed bigBed (IDR thresholded peaks) 95.3 KB
ENCFF830NAH.bigWig bigWig (fold change over control) 708.0 MB
ENCFF847EQN.bigBed bigBed (conservative IDR thresholded peaks) 179.3 KB
ENCFF868DFT.bam bam (unfiltered alignments) 2.2 GB
ENCFF882MGK.bed bed (IDR ranked peaks) 1.7 MB
ENCFF898ZCW.bigWig bigWig (signal p-value) 747.6 MB
ENCFF908QCS.bed bed (optimal IDR thresholded peaks) 69.8 KB
ENCFF912PLZ.bed bed (peaks and background as input for IDR) 4.8 MB
ENCFF947PCM.bigWig bigWig (fold change over control) 441.8 MB
ENCFF948JSO.bed bed (IDR thresholded peaks) 24.6 KB
ENCFF964EXD.bam bam (alignments) 538.5 MB
ENCFF979CVF.bigWig bigWig (signal p-value) 872.7 MB
ENCSR832DMO ENCSR · via encode_api

SRSF1 ChIP-seq in K562

Homo sapiens

64 data files
FileTypeSize
ENCFF006DVR.bigBed bigBed (conservative IDR thresholded peaks) 105.2 KB
ENCFF025BOT.fastq fastq (reads) 765.3 MB
ENCFF049OJA.bigBed bigBed (peaks and background as input for IDR) 12.7 MB
ENCFF051LTX.bigWig bigWig (fold change over control) 419.2 MB
ENCFF051VYL.bigBed bigBed (peaks and background as input for IDR) 12.8 MB
ENCFF061FXU.bigWig bigWig (fold change over control) 681.0 MB
ENCFF088WHD.bigBed bigBed (IDR thresholded peaks) 105.6 KB
ENCFF097OSL.bigBed bigBed (peaks and background as input for IDR) 12.6 MB
ENCFF159BGM.bam bam (alignments) 459.0 MB
ENCFF186JCA.bigBed bigBed (IDR thresholded peaks) 61.7 KB
ENCFF211SUA.bed bed (peaks and background as input for IDR) 4.9 MB
ENCFF214SOK.fastq fastq (reads) 674.7 MB
ENCFF228HWO.bed bed (peaks and background as input for IDR) 4.9 MB
ENCFF232CEK.bigWig bigWig (fold change over control) 310.9 MB
ENCFF275VNL.bed bed (peaks and background as input for IDR) 6.3 MB
ENCFF300SPQ.bigWig bigWig (signal p-value) 615.3 MB
ENCFF310MRD.bigWig bigWig (fold change over control) 687.9 MB
ENCFF313JFK.bed bed (IDR thresholded peaks) 7.9 KB
ENCFF339BDM.bigBed bigBed (conservative IDR thresholded peaks) 98.9 KB
ENCFF343RPQ.bam bam (unfiltered alignments) 855.3 MB
ENCFF364OZW.bigBed bigBed (peaks and background as input for IDR) 12.5 MB
ENCFF395WWG.bed bed (peaks and background as input for IDR) 4.9 MB
ENCFF406GHM.bigWig bigWig (signal p-value) 662.8 MB
ENCFF408NBP.bigWig bigWig (signal p-value) 450.9 MB
ENCFF415MCC.bam bam (unfiltered alignments) 860.1 MB
ENCFF451TMB.bigWig bigWig (fold change over control) 444.2 MB
ENCFF465NPV.bigWig bigWig (signal p-value) 400.5 MB
ENCFF475SHO.bed bed (conservative IDR thresholded peaks) 24.1 KB
ENCFF484OXN.bam bam (unfiltered alignments) 962.6 MB
ENCFF489HXX.bam bam (unfiltered alignments) 966.9 MB
ENCFF495IHG.bigBed bigBed (peaks and background as input for IDR) 12.5 MB
ENCFF533JRR.bed bed (peaks and background as input for IDR) 5.0 MB
ENCFF552GUO.bigWig bigWig (fold change over control) 290.5 MB
ENCFF564YAS.bam bam (alignments) 500.7 MB
ENCFF588QDJ.bed bed (IDR ranked peaks) 1.4 MB
ENCFF591TUP.bigWig bigWig (signal p-value) 348.3 MB
ENCFF598UEH.bigWig bigWig (fold change over control) 299.9 MB
ENCFF637EQV.bed bed (IDR ranked peaks) 1.1 MB
ENCFF647HLT.bam bam (unfiltered alignments) 957.2 MB
ENCFF650PNU.bigWig bigWig (signal p-value) 355.0 MB
ENCFF657FPA.bed bed (IDR thresholded peaks) 6.7 KB
ENCFF661JDG.bigWig bigWig (signal p-value) 695.1 MB
ENCFF668EJY.bigWig bigWig (fold change over control) 289.4 MB
ENCFF679ZDY.bed bed (conservative IDR thresholded peaks) 20.6 KB
ENCFF684TOA.bed bed (IDR ranked peaks) 3.1 MB
ENCFF702CFH.bam bam (alignments) 487.1 MB
ENCFF703ZSP.bed bed (peaks and background as input for IDR) 6.3 MB
ENCFF704FKY.bigWig bigWig (fold change over control) 689.2 MB
ENCFF710QAZ.bed bed (IDR ranked peaks) 3.1 MB
ENCFF713FDQ.bigBed bigBed (optimal IDR thresholded peaks) 86.1 KB
ENCFF733UON.bigBed bigBed (conservative IDR thresholded peaks) 86.7 KB
ENCFF773OFH.bigBed bigBed (IDR thresholded peaks) 64.4 KB
ENCFF778ZLO.bigBed bigBed (peaks and background as input for IDR) 12.5 MB
ENCFF792SXS.bed bed (IDR thresholded peaks) 24.4 KB
ENCFF798URE.bed bed (optimal IDR thresholded peaks) 21.1 KB
ENCFF832XLJ.bigWig bigWig (signal p-value) 613.2 MB
ENCFF853XFC.bigWig bigWig (signal p-value) 699.8 MB
ENCFF862DEO.bed bed (optimal IDR thresholded peaks) 21.3 KB
ENCFF867VTW.bigBed bigBed (optimal IDR thresholded peaks) 87.8 KB
ENCFF878EYI.bam bam (unfiltered alignments) 863.4 MB
ENCFF906IHF.bam bam (alignments) 471.0 MB
ENCFF923IOC.bam bam (alignments) 487.7 MB
ENCFF975FFH.bam bam (alignments) 459.5 MB
ENCFF986BVH.bed bed (conservative IDR thresholded peaks) 20.9 KB
ENCSR066FXN ENCSR · via encode_api

HNRNPH1 ChIP-seq in HepG2

Homo sapiens

64 data files
FileTypeSize
ENCFF003XSX.bigBed bigBed (conservative IDR thresholded peaks) 135.1 KB
ENCFF013USO.bigWig bigWig (fold change over control) 401.2 MB
ENCFF024RBZ.bigBed bigBed (optimal IDR thresholded peaks) 145.3 KB
ENCFF038HWH.bigBed bigBed (IDR thresholded peaks) 96.5 KB
ENCFF043LEZ.bed bed (peaks and background as input for IDR) 5.2 MB
ENCFF046NUR.bed bed (optimal IDR thresholded peaks) 46.7 KB
ENCFF047DPZ.bigBed bigBed (peaks and background as input for IDR) 12.6 MB
ENCFF055HMB.bed bed (conservative IDR thresholded peaks) 45.7 KB
ENCFF060FQY.bigWig bigWig (signal p-value) 754.8 MB
ENCFF061GXG.bigWig bigWig (fold change over control) 570.5 MB
ENCFF061XHO.bed bed (peaks and background as input for IDR) 6.6 MB
ENCFF081CSM.bigWig bigWig (fold change over control) 395.7 MB
ENCFF108YFR.bed bed (IDR ranked peaks) 4.2 MB
ENCFF206AYJ.bed bed (peaks and background as input for IDR) 6.6 MB
ENCFF211BRY.bigWig bigWig (signal p-value) 599.4 MB
ENCFF227GAF.bigWig bigWig (fold change over control) 882.5 MB
ENCFF256MDO.bigWig bigWig (signal p-value) 549.5 MB
ENCFF271NRW.bigBed bigBed (peaks and background as input for IDR) 12.6 MB
ENCFF272PYD.bam bam (unfiltered alignments) 1.2 GB
ENCFF299DCU.bigWig bigWig (fold change over control) 375.3 MB
ENCFF303FVB.bigWig bigWig (signal p-value) 782.5 MB
ENCFF332TMU.bed bed (IDR ranked peaks) 4.2 MB
ENCFF339QMW.bed bed (peaks and background as input for IDR) 5.4 MB
ENCFF356RKJ.bigBed bigBed (optimal IDR thresholded peaks) 143.4 KB
ENCFF382RJA.bam bam (alignments) 622.2 MB
ENCFF403UNL.bam bam (alignments) 686.1 MB
ENCFF409NUG.bigWig bigWig (fold change over control) 540.0 MB
ENCFF412FBO.bed bed (IDR ranked peaks) 2.9 MB
ENCFF440IUL.bam bam (unfiltered alignments) 1.1 GB
ENCFF447XXO.bam bam (alignments) 622.9 MB
ENCFF453RHM.bed bed (peaks and background as input for IDR) 5.2 MB
ENCFF455GLW.bigBed bigBed (IDR thresholded peaks) 107.3 KB
ENCFF456EQB.bigBed bigBed (peaks and background as input for IDR) 12.6 MB
ENCFF486RNL.bam bam (alignments) 662.9 MB
ENCFF489VRY.bigBed bigBed (conservative IDR thresholded peaks) 134.3 KB
ENCFF506GGI.bed bed (conservative IDR thresholded peaks) 40.1 KB
ENCFF524WWJ.bed bed (IDR thresholded peaks) 25.3 KB
ENCFF527XRI.bam bam (alignments) 643.5 MB
ENCFF569TOO.bigWig bigWig (signal p-value) 477.6 MB
ENCFF581VPI.bed bed (IDR thresholded peaks) 42.3 KB
ENCFF621CCQ.bigBed bigBed (IDR thresholded peaks) 137.4 KB
ENCFF645KVH.fastq fastq (reads) 982.6 MB
ENCFF666ZSK.bed bed (IDR thresholded peaks) 19.5 KB
ENCFF682XFG.bigBed bigBed (peaks and background as input for IDR) 12.6 MB
ENCFF699ETP.bigWig bigWig (fold change over control) 898.8 MB
ENCFF719JYX.bed bed (conservative IDR thresholded peaks) 40.5 KB
ENCFF723EME.bigWig bigWig (signal p-value) 1.0 GB
ENCFF725CKS.bigBed bigBed (conservative IDR thresholded peaks) 142.6 KB
ENCFF729DJN.bigWig bigWig (fold change over control) 414.4 MB
ENCFF730XVO.bam bam (unfiltered alignments) 1.1 GB
ENCFF743UVQ.bigWig bigWig (signal p-value) 479.8 MB
ENCFF793QFH.bigWig bigWig (fold change over control) 846.0 MB
ENCFF800PWU.bigBed bigBed (peaks and background as input for IDR) 12.6 MB
ENCFF809COT.bam bam (alignments) 642.8 MB
ENCFF810III.bam bam (unfiltered alignments) 1.2 GB
ENCFF822AKW.bam bam (unfiltered alignments) 1.2 GB
ENCFF833PJW.bam bam (unfiltered alignments) 1.1 GB
ENCFF850DZC.bed bed (IDR ranked peaks) 3.4 MB
ENCFF925LAI.bigBed bigBed (peaks and background as input for IDR) 12.6 MB
ENCFF937MYV.bed bed (optimal IDR thresholded peaks) 45.6 KB
ENCFF945SAK.bed bed (peaks and background as input for IDR) 5.4 MB
ENCFF948VWT.bigWig bigWig (signal p-value) 943.8 MB
ENCFF952XXJ.bigWig bigWig (signal p-value) 980.2 MB
ENCFF960VKG.fastq fastq (reads) 937.7 MB
ENCSR647PJW ENCSR · via encode_api

SFPQ ChIP-seq in K562

Homo sapiens

48 data files
FileTypeSize
ENCFF073RTN.bed bed (IDR thresholded peaks) 3.4 KB
ENCFF078LFQ.bed bed (peaks and background as input for IDR) 6.6 MB
ENCFF084IPL.bam bam (unfiltered alignments) 930.7 MB
ENCFF157AUL.bigWig bigWig (signal p-value) 510.5 MB
ENCFF177THB.bigWig bigWig (fold change over control) 868.0 MB
ENCFF182ANX.bed bed (peaks and background as input for IDR) 5.2 MB
ENCFF209NAC.bam bam (alignments) 660.4 MB
ENCFF231IWC.bigBed bigBed (conservative IDR thresholded peaks) 85.5 KB
ENCFF238SXN.bigWig bigWig (signal p-value) 1.0 GB
ENCFF255QGB.bam bam (alignments) 676.1 MB
ENCFF273BTT.bam bam (alignments) 543.6 MB
ENCFF301WQZ.bam bam (unfiltered alignments) 926.6 MB
ENCFF327UAH.bigBed bigBed (peaks and background as input for IDR) 12.7 MB
ENCFF339ALK.bam bam (alignments) 556.9 MB
ENCFF362XYW.bam bam (alignments) 544.1 MB
ENCFF405FNI.bed bed (conservative IDR thresholded peaks) 3.3 KB
ENCFF432JMU.bigWig bigWig (fold change over control) 420.3 MB
ENCFF459ZIM.bigBed bigBed (peaks and background as input for IDR) 12.8 MB
ENCFF471RUL.fastq fastq (reads) 708.9 MB
ENCFF483MHW.bigWig bigWig (signal p-value) 918.8 MB
ENCFF534NHI.bigBed bigBed (IDR thresholded peaks) 80.0 KB
ENCFF545PTK.bam bam (unfiltered alignments) 1.1 GB
ENCFF569LTB.bed bed (IDR ranked peaks) 1.9 MB
ENCFF569QAG.bigBed bigBed (conservative IDR thresholded peaks) 86.8 KB
ENCFF576NBS.fastq fastq (reads) 822.9 MB
ENCFF610GIZ.bed bed (IDR ranked peaks) 2.8 MB
ENCFF632YBT.bigWig bigWig (signal p-value) 901.5 MB
ENCFF634HZE.bigWig bigWig (fold change over control) 500.0 MB
ENCFF642BEE.bed bed (IDR ranked peaks) 1.3 MB
ENCFF652ZEN.bed bed (IDR thresholded peaks) 4.3 KB
ENCFF657NNZ.bigBed bigBed (IDR thresholded peaks) 84.8 KB
ENCFF671NLJ.bed bed (peaks and background as input for IDR) 5.2 MB
ENCFF705JNE.bigBed bigBed (IDR thresholded peaks) 89.0 KB
ENCFF707SUW.bed bed (IDR ranked peaks) 2.8 MB
ENCFF720GQS.bigWig bigWig (fold change over control) 576.6 MB
ENCFF720XFA.bigWig bigWig (fold change over control) 376.5 MB
ENCFF742OVT.bam bam (alignments) 659.7 MB
ENCFF746EEZ.bigWig bigWig (signal p-value) 730.1 MB
ENCFF752THE.bigBed bigBed (peaks and background as input for IDR) 12.6 MB
ENCFF757ODD.bed bed (optimal IDR thresholded peaks) 4.3 KB
ENCFF888SYZ.bam bam (unfiltered alignments) 1.1 GB
ENCFF898SGI.bam bam (unfiltered alignments) 921.5 MB
ENCFF902EIZ.bigWig bigWig (fold change over control) 889.4 MB
ENCFF910JIW.bigWig bigWig (signal p-value) 504.9 MB
ENCFF923EYZ.bed bed (IDR thresholded peaks) 2.2 KB
ENCFF976IPV.bigBed bigBed (optimal IDR thresholded peaks) 88.5 KB
ENCFF978DPO.bam bam (unfiltered alignments) 1.1 GB
ENCFF995MDH.bed bed (conservative IDR thresholded peaks) 3.7 KB
ENCSR014RCS ENCSR · via encode_api

HNRNPK ChIP-seq in K562

Homo sapiens

66 data files
FileTypeSize
ENCFF037LWJ.bed bed (peaks and background as input for IDR) 5.1 MB
ENCFF052YKV.bed bed (peaks and background as input for IDR) 5.1 MB
ENCFF054IHO.bed bed (peaks and background as input for IDR) 6.5 MB
ENCFF077UMQ.bigBed bigBed (IDR thresholded peaks) 379.0 KB
ENCFF099HSH.bed bed (IDR thresholded peaks) 74.0 KB
ENCFF152TEK.bam bam (alignments) 394.6 MB
ENCFF170ZAQ.bigWig bigWig (fold change over control) 405.1 MB
ENCFF209WLW.bigWig bigWig (signal p-value) 744.1 MB
ENCFF237MTB.bigBed bigBed (optimal IDR thresholded peaks) 393.3 KB
ENCFF253OJD.bigBed bigBed (peaks and background as input for IDR) 12.7 MB
ENCFF261KRC.bed bed (IDR ranked peaks) 1.6 MB
ENCFF262VMC.bam bam (unfiltered alignments) 1.9 GB
ENCFF267ADT.bigWig bigWig (fold change over control) 287.0 MB
ENCFF320ORV.bigWig bigWig (fold change over control) 306.9 MB
ENCFF369OVQ.bigBed bigBed (peaks and background as input for IDR) 12.7 MB
ENCFF382ULC.bigBed bigBed (conservative IDR thresholded peaks) 390.9 KB
ENCFF399ZFX.bigBed bigBed (optimal IDR thresholded peaks) 399.3 KB
ENCFF405IJB.bigWig bigWig (fold change over control) 407.8 MB
ENCFF405TWQ.fastq fastq (reads) 1.5 GB
ENCFF409JZE.bed bed (peaks and background as input for IDR) 6.6 MB
ENCFF421AQS.bigBed bigBed (conservative IDR thresholded peaks) 386.2 KB
ENCFF426HJF.fastq fastq (reads) 1.6 GB
ENCFF428EEB.bed bed (IDR ranked peaks) 4.0 MB
ENCFF439JKZ.bed bed (peaks and background as input for IDR) 5.2 MB
ENCFF455MEZ.fastq fastq (reads) 356.7 MB
ENCFF455OST.bed bed (IDR thresholded peaks) 180.4 KB
ENCFF456YPY.bigBed bigBed (peaks and background as input for IDR) 12.6 MB
ENCFF465JMD.bigWig bigWig (signal p-value) 539.9 MB
ENCFF477QHE.bigBed bigBed (peaks and background as input for IDR) 12.9 MB
ENCFF505RNR.bed bed (conservative IDR thresholded peaks) 199.3 KB
ENCFF539SVN.fastq fastq (reads) 393.3 MB
ENCFF550AVU.bed bed (conservative IDR thresholded peaks) 184.4 KB
ENCFF555QDZ.bed bed (IDR ranked peaks) 1.6 MB
ENCFF584FXT.bigWig bigWig (signal p-value) 829.0 MB
ENCFF584SKU.bam bam (alignments) 355.4 MB
ENCFF588GTL.bam bam (alignments) 354.9 MB
ENCFF589EVC.bigWig bigWig (signal p-value) 494.6 MB
ENCFF634ADT.bam bam (unfiltered alignments) 1.8 GB
ENCFF639KRR.bigWig bigWig (fold change over control) 655.0 MB
ENCFF647ZOW.bigWig bigWig (signal p-value) 791.6 MB
ENCFF665LTF.bam bam (alignments) 369.0 MB
ENCFF695FSW.bam bam (alignments) 408.3 MB
ENCFF706ZDC.bed bed (peaks and background as input for IDR) 5.2 MB
ENCFF714PRB.bam bam (unfiltered alignments) 1.8 GB
ENCFF733NAT.bigWig bigWig (signal p-value) 483.1 MB
ENCFF741DGT.bigBed bigBed (IDR thresholded peaks) 165.1 KB
ENCFF754BMR.bigWig bigWig (fold change over control) 653.7 MB
ENCFF754BWI.bed bed (IDR ranked peaks) 4.3 MB
ENCFF760WGC.bam bam (alignments) 394.1 MB
ENCFF777CWV.bed bed (optimal IDR thresholded peaks) 194.1 KB
ENCFF784XCG.bigWig bigWig (fold change over control) 272.3 MB
ENCFF832BGN.bigBed bigBed (IDR thresholded peaks) 154.5 KB
ENCFF854OYD.bigWig bigWig (fold change over control) 652.7 MB
ENCFF860WYW.bam bam (unfiltered alignments) 1.9 GB
ENCFF866YPS.bam bam (unfiltered alignments) 1.7 GB
ENCFF886ZZG.bed bed (IDR thresholded peaks) 64.0 KB
ENCFF889ZXM.bigBed bigBed (peaks and background as input for IDR) 12.8 MB
ENCFF900MON.bigWig bigWig (fold change over control) 277.2 MB
ENCFF913ATA.bam bam (unfiltered alignments) 1.8 GB
ENCFF936IJD.bed bed (conservative IDR thresholded peaks) 188.6 KB
ENCFF954RNO.bigBed bigBed (conservative IDR thresholded peaks) 407.4 KB
ENCFF958BGI.bigBed bigBed (peaks and background as input for IDR) 12.6 MB
ENCFF965RGF.bigWig bigWig (signal p-value) 771.2 MB
ENCFF982ECU.bigWig bigWig (signal p-value) 877.3 MB
ENCFF984QUV.bed bed (optimal IDR thresholded peaks) 189.9 KB
ENCFF998MVM.bigWig bigWig (signal p-value) 495.9 MB
ENCSR258SXK ENCSR · via encode_api

SFPQ ChIP-seq in HepG2

Homo sapiens

64 data files
FileTypeSize
ENCFF003KWW.bed bed (IDR ranked peaks) 2.5 MB
ENCFF023UED.bigBed bigBed (optimal IDR thresholded peaks) 90.3 KB
ENCFF027EGQ.bed bed (peaks and background as input for IDR) 4.7 MB
ENCFF039AZH.bam bam (unfiltered alignments) 861.4 MB
ENCFF043HEA.bed bed (peaks and background as input for IDR) 4.8 MB
ENCFF054IKS.bam bam (alignments) 499.6 MB
ENCFF054JUM.bigWig bigWig (signal p-value) 813.7 MB
ENCFF067LJV.bam bam (unfiltered alignments) 859.0 MB
ENCFF069ARE.bigWig bigWig (signal p-value) 406.0 MB
ENCFF099UIV.bigBed bigBed (peaks and background as input for IDR) 12.6 MB
ENCFF106SSM.bam bam (alignments) 536.4 MB
ENCFF107VQU.fastq fastq (reads) 591.4 MB
ENCFF119MHU.bigWig bigWig (signal p-value) 701.1 MB
ENCFF143UWZ.bed bed (peaks and background as input for IDR) 4.6 MB
ENCFF160CCK.bigBed bigBed (conservative IDR thresholded peaks) 89.4 KB
ENCFF164BRU.bigWig bigWig (fold change over control) 332.9 MB
ENCFF173HSV.bigWig bigWig (signal p-value) 436.1 MB
ENCFF218MEC.bam bam (alignments) 500.1 MB
ENCFF247JFQ.bigWig bigWig (signal p-value) 752.1 MB
ENCFF290GLV.bigBed bigBed (conservative IDR thresholded peaks) 95.3 KB
ENCFF293HRO.bed bed (IDR thresholded peaks) 8.3 KB
ENCFF304LGY.bigBed bigBed (IDR thresholded peaks) 78.2 KB
ENCFF357IUK.bed bed (peaks and background as input for IDR) 6.0 MB
ENCFF358JJM.bigWig bigWig (fold change over control) 463.8 MB
ENCFF375AXH.bigWig bigWig (fold change over control) 428.4 MB
ENCFF376UPU.bigWig bigWig (signal p-value) 757.2 MB
ENCFF399SZP.bigBed bigBed (peaks and background as input for IDR) 12.8 MB
ENCFF422DEL.bigBed bigBed (peaks and background as input for IDR) 12.8 MB
ENCFF432RAR.fastq fastq (reads) 623.5 MB
ENCFF445ZGA.bam bam (unfiltered alignments) 814.5 MB
ENCFF487UBR.bigWig bigWig (fold change over control) 769.5 MB
ENCFF491IMR.bed bed (conservative IDR thresholded peaks) 7.0 KB
ENCFF491QGH.bam bam (alignments) 560.4 MB
ENCFF508RFK.bed bed (conservative IDR thresholded peaks) 8.2 KB
ENCFF527YVD.bigBed bigBed (peaks and background as input for IDR) 10.5 MB
ENCFF531EBM.bigBed bigBed (peaks and background as input for IDR) 10.4 MB
ENCFF555PDQ.bed bed (IDR ranked peaks) 2.6 MB
ENCFF560QAF.bam bam (alignments) 523.4 MB
ENCFF577QLF.bigWig bigWig (fold change over control) 332.8 MB
ENCFF596DPW.bed bed (IDR ranked peaks) 953.3 KB
ENCFF598JWW.bed bed (IDR thresholded peaks) 2.2 KB
ENCFF599UZL.bigBed bigBed (IDR thresholded peaks) 89.4 KB
ENCFF640HGE.bigWig bigWig (fold change over control) 293.9 MB
ENCFF656QSA.bigWig bigWig (fold change over control) 735.4 MB
ENCFF664WJC.bigBed bigBed (optimal IDR thresholded peaks) 93.1 KB
ENCFF671QBO.bed bed (optimal IDR thresholded peaks) 8.3 KB
ENCFF692DSK.bed bed (conservative IDR thresholded peaks) 6.8 KB
ENCFF698PTR.bigBed bigBed (peaks and background as input for IDR) 10.4 MB
ENCFF750CAX.bam bam (unfiltered alignments) 812.4 MB
ENCFF762LPR.bigWig bigWig (fold change over control) 304.8 MB
ENCFF786GIS.bam bam (unfiltered alignments) 801.0 MB
ENCFF794IRZ.bigWig bigWig (signal p-value) 658.0 MB
ENCFF828YGU.bigWig bigWig (signal p-value) 417.1 MB
ENCFF847BSX.bed bed (IDR ranked peaks) 1.0 MB
ENCFF857OUT.bed bed (peaks and background as input for IDR) 4.7 MB
ENCFF871QIH.bigWig bigWig (signal p-value) 481.1 MB
ENCFF881XJE.bigBed bigBed (conservative IDR thresholded peaks) 94.2 KB
ENCFF882GPG.bigBed bigBed (IDR thresholded peaks) 79.4 KB
ENCFF900OMZ.bam bam (unfiltered alignments) 847.4 MB
ENCFF919CIS.bed bed (IDR thresholded peaks) 2.1 KB
ENCFF922FRH.bed bed (optimal IDR thresholded peaks) 9.7 KB
ENCFF932FDG.bam bam (alignments) 537.0 MB
ENCFF975QZC.bed bed (peaks and background as input for IDR) 5.9 MB
ENCFF976BVR.bigWig bigWig (fold change over control) 746.0 MB
ENCSR313VZG ENCSR · via encode_api

FIP1L1 ChIP-seq on HepG2

Homo sapiens

64 data files
FileTypeSize
ENCFF011DOP.bed bed (conservative IDR thresholded peaks) 37.9 KB
ENCFF015CFL.bigBed bigBed (IDR thresholded peaks) 163.0 KB
ENCFF017VER.bigBed bigBed (IDR thresholded peaks) 120.4 KB
ENCFF018EUF.bigWig bigWig (fold change over control) 681.6 MB
ENCFF020YTL.bed bed (peaks and background as input for IDR) 4.9 MB
ENCFF025MRW.bigWig bigWig (fold change over control) 362.1 MB
ENCFF030WNK.bed bed (IDR ranked peaks) 3.4 MB
ENCFF031LBW.bed bed (optimal IDR thresholded peaks) 61.9 KB
ENCFF062RFF.fastq fastq (reads) 597.4 MB
ENCFF065AIB.bam bam (unfiltered alignments) 792.8 MB
ENCFF085CEK.bed bed (peaks and background as input for IDR) 6.0 MB
ENCFF093OUB.bed bed (optimal IDR thresholded peaks) 67.4 KB
ENCFF125ROT.bigWig bigWig (signal p-value) 799.5 MB
ENCFF130UEI.bigWig bigWig (signal p-value) 831.1 MB
ENCFF173KDL.bigBed bigBed (peaks and background as input for IDR) 10.4 MB
ENCFF175UQI.bigWig bigWig (signal p-value) 790.0 MB
ENCFF211FPA.bigBed bigBed (conservative IDR thresholded peaks) 115.2 KB
ENCFF222TTP.bigWig bigWig (fold change over control) 648.3 MB
ENCFF228MLP.bed bed (conservative IDR thresholded peaks) 37.2 KB
ENCFF248JIX.bigWig bigWig (fold change over control) 341.3 MB
ENCFF269YPC.bam bam (unfiltered alignments) 809.3 MB
ENCFF290TBE.bigBed bigBed (peaks and background as input for IDR) 12.5 MB
ENCFF295CZQ.bigBed bigBed (conservative IDR thresholded peaks) 146.3 KB
ENCFF300ORZ.bigBed bigBed (peaks and background as input for IDR) 12.4 MB
ENCFF316ZVA.bigWig bigWig (fold change over control) 410.2 MB
ENCFF343ZNR.fastq fastq (reads) 578.4 MB
ENCFF354CAP.bed bed (IDR ranked peaks) 3.9 MB
ENCFF362LCQ.bam bam (alignments) 508.9 MB
ENCFF368GIR.bed bed (IDR ranked peaks) 2.0 MB
ENCFF390VZU.bed bed (IDR thresholded peaks) 59.4 KB
ENCFF421GPF.bigWig bigWig (fold change over control) 394.0 MB
ENCFF453LSA.bed bed (IDR thresholded peaks) 33.6 KB
ENCFF469WLB.bigWig bigWig (fold change over control) 373.6 MB
ENCFF508IWP.bigBed bigBed (peaks and background as input for IDR) 12.3 MB
ENCFF564LXA.bigWig bigWig (fold change over control) 649.4 MB
ENCFF610ODH.bigWig bigWig (fold change over control) 415.9 MB
ENCFF635QCK.bigBed bigBed (peaks and background as input for IDR) 10.4 MB
ENCFF639ZRX.bam bam (unfiltered alignments) 812.1 MB
ENCFF640GTY.bam bam (unfiltered alignments) 786.9 MB
ENCFF642HCP.bed bed (IDR ranked peaks) 1.3 MB
ENCFF659RUZ.bigBed bigBed (optimal IDR thresholded peaks) 204.3 KB
ENCFF693PBB.bed bed (peaks and background as input for IDR) 6.0 MB
ENCFF707ALH.bam bam (alignments) 373.9 MB
ENCFF715RSL.bam bam (alignments) 542.6 MB
ENCFF734FJO.bigBed bigBed (peaks and background as input for IDR) 12.6 MB
ENCFF761RXC.bed bed (conservative IDR thresholded peaks) 31.0 KB
ENCFF765HAG.bed bed (IDR thresholded peaks) 8.9 KB
ENCFF766SVL.bigWig bigWig (signal p-value) 843.2 MB
ENCFF774WWH.bed bed (peaks and background as input for IDR) 5.4 MB
ENCFF796TKZ.bigBed bigBed (conservative IDR thresholded peaks) 126.4 KB
ENCFF815PXP.bigWig bigWig (signal p-value) 823.5 MB
ENCFF822EXO.bam bam (alignments) 400.8 MB
ENCFF827BBB.bigWig bigWig (signal p-value) 789.4 MB
ENCFF844GGM.bigBed bigBed (optimal IDR thresholded peaks) 167.6 KB
ENCFF845CKE.bam bam (unfiltered alignments) 770.9 MB
ENCFF886VSQ.bed bed (peaks and background as input for IDR) 5.4 MB
ENCFF894ROM.bam bam (unfiltered alignments) 784.7 MB
ENCFF894VMR.bigWig bigWig (signal p-value) 734.5 MB
ENCFF922LTP.bigWig bigWig (signal p-value) 684.6 MB
ENCFF939QSQ.bigWig bigWig (signal p-value) 697.7 MB
ENCFF940FLJ.bed bed (peaks and background as input for IDR) 4.8 MB
ENCFF954VXM.bam bam (alignments) 508.3 MB
ENCFF994SVB.bam bam (alignments) 374.5 MB
ENCFF996KDK.bigBed bigBed (IDR thresholded peaks) 81.9 KB
ENCSR594BNR ENCSR · via encode_api

HNRNPL ChIP-seq in K562

Homo sapiens

64 data files
FileTypeSize
ENCFF010STZ.bed bed (optimal IDR thresholded peaks) 138.2 KB
ENCFF013REF.bed bed (peaks and background as input for IDR) 5.2 MB
ENCFF025CAN.bigBed bigBed (peaks and background as input for IDR) 12.7 MB
ENCFF026PAK.bam bam (alignments) 538.3 MB
ENCFF039ZBL.bed bed (IDR ranked peaks) 3.2 MB
ENCFF076EFI.bigBed bigBed (peaks and background as input for IDR) 12.9 MB
ENCFF119JMJ.bigBed bigBed (peaks and background as input for IDR) 12.7 MB
ENCFF136KKG.bigWig bigWig (fold change over control) 392.8 MB
ENCFF137KQF.bigWig bigWig (signal p-value) 892.9 MB
ENCFF145MSJ.bigWig bigWig (fold change over control) 559.3 MB
ENCFF151KOR.bam bam (alignments) 551.9 MB
ENCFF174JFC.bigWig bigWig (fold change over control) 843.4 MB
ENCFF185LDC.bed bed (IDR ranked peaks) 3.1 MB
ENCFF245TRX.bam bam (unfiltered alignments) 826.9 MB
ENCFF260ZIQ.bam bam (unfiltered alignments) 823.4 MB
ENCFF283DWT.bigBed bigBed (conservative IDR thresholded peaks) 319.9 KB
ENCFF285OGB.bam bam (unfiltered alignments) 890.6 MB
ENCFF296JLL.bigBed bigBed (IDR thresholded peaks) 341.2 KB
ENCFF301VWT.bam bam (unfiltered alignments) 883.7 MB
ENCFF309DOU.bigWig bigWig (fold change over control) 839.0 MB
ENCFF318WXW.bigWig bigWig (signal p-value) 872.4 MB
ENCFF336VGN.bam bam (unfiltered alignments) 894.6 MB
ENCFF344OQF.bed bed (IDR thresholded peaks) 94.6 KB
ENCFF384TDQ.bed bed (peaks and background as input for IDR) 5.2 MB
ENCFF407BEX.bigWig bigWig (fold change over control) 493.1 MB
ENCFF423RKR.bed bed (conservative IDR thresholded peaks) 128.6 KB
ENCFF439AGS.bam bam (alignments) 557.6 MB
ENCFF447DXS.bigWig bigWig (fold change over control) 850.8 MB
ENCFF490ZXD.bigWig bigWig (fold change over control) 363.3 MB
ENCFF500GKM.bed bed (IDR thresholded peaks) 49.9 KB
ENCFF501SMZ.bed bed (peaks and background as input for IDR) 5.1 MB
ENCFF514LUN.bam bam (alignments) 558.2 MB
ENCFF524TKP.bigBed bigBed (peaks and background as input for IDR) 12.8 MB
ENCFF531SWP.bed bed (IDR ranked peaks) 1.7 MB
ENCFF564AVA.bigWig bigWig (signal p-value) 728.2 MB
ENCFF573SRY.bam bam (alignments) 538.9 MB
ENCFF575MTG.bam bam (unfiltered alignments) 816.4 MB
ENCFF605ZCO.bam bam (alignments) 571.3 MB
ENCFF629GYT.bigBed bigBed (conservative IDR thresholded peaks) 323.4 KB
ENCFF643VQE.bigBed bigBed (optimal IDR thresholded peaks) 341.8 KB
ENCFF650VQU.bed bed (conservative IDR thresholded peaks) 125.5 KB
ENCFF667AJI.bigWig bigWig (signal p-value) 549.7 MB
ENCFF681DNE.bigBed bigBed (peaks and background as input for IDR) 12.7 MB
ENCFF682JRN.bed bed (conservative IDR thresholded peaks) 126.3 KB
ENCFF698TRM.fastq fastq (reads) 668.1 MB
ENCFF731YBN.bigWig bigWig (fold change over control) 392.2 MB
ENCFF736DKR.bigWig bigWig (signal p-value) 944.8 MB
ENCFF738KOC.bed bed (peaks and background as input for IDR) 6.4 MB
ENCFF742YDN.bigWig bigWig (signal p-value) 767.2 MB
ENCFF752BIP.bigBed bigBed (peaks and background as input for IDR) 12.7 MB
ENCFF771OMH.bigBed bigBed (IDR thresholded peaks) 148.1 KB
ENCFF779NTZ.bigBed bigBed (optimal IDR thresholded peaks) 346.5 KB
ENCFF814OEQ.bigBed bigBed (conservative IDR thresholded peaks) 326.9 KB
ENCFF820AIH.bigWig bigWig (signal p-value) 518.8 MB
ENCFF828TKC.bed bed (peaks and background as input for IDR) 5.0 MB
ENCFF838LKB.bed bed (peaks and background as input for IDR) 6.4 MB
ENCFF854WAP.bed bed (IDR thresholded peaks) 136.6 KB
ENCFF906WLY.bigWig bigWig (signal p-value) 523.8 MB
ENCFF932MEL.bed bed (IDR ranked peaks) 1.7 MB
ENCFF941MCR.bigBed bigBed (IDR thresholded peaks) 261.0 KB
ENCFF949TAT.bigWig bigWig (fold change over control) 343.1 MB
ENCFF952MRN.bigWig bigWig (signal p-value) 519.4 MB
ENCFF972RFP.fastq fastq (reads) 610.6 MB
ENCFF984ESZ.bed bed (optimal IDR thresholded peaks) 139.7 KB
ENCSR624GNZ ENCSR · via encode_api

SRSF9 ChIP-seq on HepG2

Homo sapiens

66 data files
FileTypeSize
ENCFF012UBI.bigWig bigWig (fold change over control) 534.9 MB
ENCFF014JSQ.bigWig bigWig (fold change over control) 212.6 MB
ENCFF047AMP.bigWig bigWig (signal p-value) 896.1 MB
ENCFF052NOL.bam bam (unfiltered alignments) 1.6 GB
ENCFF077RDY.bigBed bigBed (peaks and background as input for IDR) 8.6 MB
ENCFF082ONT.bigBed bigBed (IDR thresholded peaks) 56.0 KB
ENCFF083ZXX.bed bed (peaks and background as input for IDR) 4.6 MB
ENCFF120XKW.bam bam (alignments) 658.9 MB
ENCFF121PED.bed bed (optimal IDR thresholded peaks) 16.6 KB
ENCFF125RFK.bed bed (IDR thresholded peaks) 8.5 KB
ENCFF161TMP.bam bam (unfiltered alignments) 1.3 GB
ENCFF232FDK.bigBed bigBed (IDR thresholded peaks) 16.1 KB
ENCFF250TLW.bam bam (alignments) 679.2 MB
ENCFF284HXN.bed bed (conservative IDR thresholded peaks) 12.0 KB
ENCFF301RXW.bigBed bigBed (conservative IDR thresholded peaks) 72.7 KB
ENCFF302DUJ.bed bed (peaks and background as input for IDR) 6.4 MB
ENCFF332BZZ.bam bam (alignments) 325.0 MB
ENCFF333FNS.bigWig bigWig (signal p-value) 457.2 MB
ENCFF337GLC.bed bed (IDR ranked peaks) 541.2 KB
ENCFF342SIN.bed bed (conservative IDR thresholded peaks) 16.1 KB
ENCFF361CHG.bam bam (alignments) 324.7 MB
ENCFF375IKN.bed bed (peaks and background as input for IDR) 5.3 MB
ENCFF405TRF.bigWig bigWig (fold change over control) 357.0 MB
ENCFF408WZC.fastq fastq (reads) 311.2 MB
ENCFF415MSN.bigWig bigWig (fold change over control) 360.7 MB
ENCFF423CSH.bigWig bigWig (signal p-value) 1018.6 MB
ENCFF424EUW.bigWig bigWig (fold change over control) 216.8 MB
ENCFF468XEP.bigWig bigWig (signal p-value) 512.2 MB
ENCFF500JKK.bigBed bigBed (peaks and background as input for IDR) 12.6 MB
ENCFF509JCI.bed bed (IDR ranked peaks) 3.0 MB
ENCFF517BYU.bigBed bigBed (optimal IDR thresholded peaks) 80.6 KB
ENCFF531WTZ.bigWig bigWig (fold change over control) 307.9 MB
ENCFF534BBH.bam bam (alignments) 659.4 MB
ENCFF570VVZ.fastq fastq (reads) 1.3 GB
ENCFF576GKJ.bed bed (IDR thresholded peaks) 1.1 KB
ENCFF582XEU.bigWig bigWig (signal p-value) 837.6 MB
ENCFF587VAQ.bigBed bigBed (peaks and background as input for IDR) 12.6 MB
ENCFF615DJU.bed bed (conservative IDR thresholded peaks) 12.4 KB
ENCFF639YQS.bigWig bigWig (signal p-value) 806.2 MB
ENCFF640SRL.bam bam (unfiltered alignments) 1.3 GB
ENCFF652VHE.fastq fastq (reads) 284.8 MB
ENCFF669YFC.bigBed bigBed (peaks and background as input for IDR) 12.6 MB
ENCFF686SQQ.bigWig bigWig (signal p-value) 635.2 MB
ENCFF697LIJ.bigWig bigWig (signal p-value) 466.0 MB
ENCFF697OIL.bigBed bigBed (peaks and background as input for IDR) 12.6 MB
ENCFF697WEU.bigWig bigWig (fold change over control) 682.9 MB
ENCFF712VDD.bigBed bigBed (peaks and background as input for IDR) 11.5 MB
ENCFF714JWD.bed bed (peaks and background as input for IDR) 3.8 MB
ENCFF720QXQ.bam bam (unfiltered alignments) 1.6 GB
ENCFF759NLF.bigWig bigWig (signal p-value) 945.7 MB
ENCFF763SMP.bed bed (IDR ranked peaks) 3.4 MB
ENCFF771KFA.bigBed bigBed (conservative IDR thresholded peaks) 71.2 KB
ENCFF807AVS.bam bam (unfiltered alignments) 1.3 GB
ENCFF813YZR.bigWig bigWig (fold change over control) 682.1 MB
ENCFF820KHP.bigBed bigBed (conservative IDR thresholded peaks) 89.7 KB
ENCFF822DEN.bigBed bigBed (optimal IDR thresholded peaks) 79.8 KB
ENCFF826DAL.bam bam (unfiltered alignments) 1.6 GB
ENCFF849RZK.bed bed (peaks and background as input for IDR) 6.3 MB
ENCFF851DRP.bed bed (IDR thresholded peaks) 18.3 KB
ENCFF868WXR.bed bed (optimal IDR thresholded peaks) 17.1 KB
ENCFF924UXY.fastq fastq (reads) 1.1 GB
ENCFF935WYH.bigBed bigBed (IDR thresholded peaks) 82.0 KB
ENCFF940WDW.bed bed (peaks and background as input for IDR) 5.3 MB
ENCFF956EBO.bam bam (alignments) 334.7 MB
ENCFF972WCD.bed bed (IDR ranked peaks) 2.3 MB
ENCFF984LPW.bigWig bigWig (fold change over control) 713.8 MB
ENCSR641BSL ENCSR · via encode_api

AGO1 ChIP-seq in K562

Homo sapiens

64 data files
FileTypeSize
ENCFF014EIR.bed bed (IDR ranked peaks) 2.9 MB
ENCFF020OLK.bigWig bigWig (fold change over control) 454.0 MB
ENCFF023SZR.bigBed bigBed (peaks and background as input for IDR) 12.4 MB
ENCFF025NLP.bigBed bigBed (IDR thresholded peaks) 529.1 KB
ENCFF036MFX.bigBed bigBed (IDR thresholded peaks) 416.0 KB
ENCFF054VBS.bigWig bigWig (fold change over control) 689.8 MB
ENCFF057BCB.bigWig bigWig (fold change over control) 277.6 MB
ENCFF100VYA.bed bed (optimal IDR thresholded peaks) 204.6 KB
ENCFF107MPX.bigBed bigBed (peaks and background as input for IDR) 12.3 MB
ENCFF110JOA.bed bed (peaks and background as input for IDR) 6.8 MB
ENCFF115WOM.bigWig bigWig (signal p-value) 792.7 MB
ENCFF117VZX.bigWig bigWig (signal p-value) 434.7 MB
ENCFF124PJH.bigBed bigBed (peaks and background as input for IDR) 12.3 MB
ENCFF132NIO.bed bed (conservative IDR thresholded peaks) 195.2 KB
ENCFF134LMY.bam bam (unfiltered alignments) 1.0 GB
ENCFF184DGL.bam bam (alignments) 523.0 MB
ENCFF188QXQ.bam bam (unfiltered alignments) 1.0 GB
ENCFF191KLS.bed bed (peaks and background as input for IDR) 5.9 MB
ENCFF195LIB.bigWig bigWig (fold change over control) 346.1 MB
ENCFF197LLD.bigWig bigWig (signal p-value) 450.2 MB
ENCFF200JEU.bigBed bigBed (conservative IDR thresholded peaks) 503.2 KB
ENCFF242XOG.bigBed bigBed (conservative IDR thresholded peaks) 516.1 KB
ENCFF257DAB.bed bed (IDR ranked peaks) 5.2 MB
ENCFF303OIT.bigWig bigWig (signal p-value) 789.2 MB
ENCFF308CCV.bigWig bigWig (signal p-value) 558.4 MB
ENCFF355HTE.bam bam (alignments) 456.0 MB
ENCFF360QAB.bam bam (alignments) 514.3 MB
ENCFF385CBB.bam bam (unfiltered alignments) 1.1 GB
ENCFF431XVO.bam bam (alignments) 448.6 MB
ENCFF471TDC.bam bam (alignments) 448.0 MB
ENCFF490RQI.bam bam (unfiltered alignments) 1.1 GB
ENCFF497HRN.bigBed bigBed (peaks and background as input for IDR) 12.3 MB
ENCFF502HMU.bam bam (unfiltered alignments) 1.1 GB
ENCFF521JBC.bigWig bigWig (fold change over control) 401.5 MB
ENCFF556KWA.bed bed (conservative IDR thresholded peaks) 195.1 KB
ENCFF577CIY.bed bed (peaks and background as input for IDR) 5.7 MB
ENCFF583LSH.bigWig bigWig (fold change over control) 682.4 MB
ENCFF593VAW.bigWig bigWig (fold change over control) 335.7 MB
ENCFF601MYL.bigBed bigBed (optimal IDR thresholded peaks) 544.9 KB
ENCFF648AFL.bam bam (alignments) 515.0 MB
ENCFF717NDQ.bed bed (peaks and background as input for IDR) 5.9 MB
ENCFF738DPN.bigWig bigWig (signal p-value) 732.1 MB
ENCFF739PXE.bigWig bigWig (fold change over control) 283.9 MB
ENCFF741BCI.bigBed bigBed (optimal IDR thresholded peaks) 543.9 KB
ENCFF743ILZ.bed bed (IDR thresholded peaks) 103.2 KB
ENCFF765RPA.bigBed bigBed (IDR thresholded peaks) 319.8 KB
ENCFF775IVB.bigWig bigWig (signal p-value) 394.0 MB
ENCFF790CEE.bed bed (peaks and background as input for IDR) 6.8 MB
ENCFF794IRP.bed bed (IDR thresholded peaks) 199.2 KB
ENCFF825QGS.bed bed (IDR thresholded peaks) 147.6 KB
ENCFF836CBD.fastq fastq (reads) 880.5 MB
ENCFF836VRV.bed bed (optimal IDR thresholded peaks) 208.4 KB
ENCFF838MBW.bed bed (IDR ranked peaks) 5.1 MB
ENCFF849NJM.bigWig bigWig (fold change over control) 688.2 MB
ENCFF889EEB.bam bam (unfiltered alignments) 1.0 GB
ENCFF893JPR.bigBed bigBed (peaks and background as input for IDR) 12.3 MB
ENCFF896BJW.bed bed (IDR ranked peaks) 3.7 MB
ENCFF927SOS.bed bed (conservative IDR thresholded peaks) 185.4 KB
ENCFF927VWO.bigWig bigWig (signal p-value) 704.7 MB
ENCFF936QHP.bigBed bigBed (conservative IDR thresholded peaks) 523.3 KB
ENCFF939GVX.bigBed bigBed (peaks and background as input for IDR) 12.3 MB
ENCFF968KYK.bigWig bigWig (signal p-value) 812.0 MB
ENCFF980ENB.bed bed (peaks and background as input for IDR) 5.7 MB
ENCFF994KPK.fastq fastq (reads) 915.0 MB
ENCSR156APP ENCSR · via encode_api

PTBP1 ChIP-seq on HepG2

Homo sapiens

66 data files
FileTypeSize
ENCFF008YMP.bigWig bigWig (signal p-value) 928.2 MB
ENCFF022QNU.bigBed bigBed (optimal IDR thresholded peaks) 200.5 KB
ENCFF024DUK.bed bed (peaks and background as input for IDR) 4.8 MB
ENCFF027EGW.bam bam (unfiltered alignments) 1.7 GB
ENCFF042QVS.bigWig bigWig (fold change over control) 325.1 MB
ENCFF046OVF.bigBed bigBed (IDR thresholded peaks) 197.4 KB
ENCFF081QKL.bam bam (alignments) 483.5 MB
ENCFF123FYD.bigWig bigWig (fold change over control) 804.7 MB
ENCFF129THB.bed bed (peaks and background as input for IDR) 4.9 MB
ENCFF133PYQ.bigWig bigWig (fold change over control) 803.4 MB
ENCFF144XUD.bam bam (alignments) 484.2 MB
ENCFF153IOE.bigWig bigWig (fold change over control) 345.5 MB
ENCFF182LNH.bigBed bigBed (peaks and background as input for IDR) 12.5 MB
ENCFF230VSL.bigBed bigBed (peaks and background as input for IDR) 12.3 MB
ENCFF238PXC.bam bam (unfiltered alignments) 2.0 GB
ENCFF240ZTM.bam bam (alignments) 556.6 MB
ENCFF250LKC.bigBed bigBed (IDR thresholded peaks) 76.9 KB
ENCFF265FQX.bam bam (unfiltered alignments) 1.8 GB
ENCFF265KYA.bigWig bigWig (fold change over control) 335.9 MB
ENCFF271EVQ.bigBed bigBed (peaks and background as input for IDR) 12.5 MB
ENCFF304TGO.bed bed (IDR ranked peaks) 2.4 MB
ENCFF341IRG.bigWig bigWig (signal p-value) 506.3 MB
ENCFF345LZT.bigBed bigBed (conservative IDR thresholded peaks) 154.1 KB
ENCFF372MYD.bigBed bigBed (conservative IDR thresholded peaks) 154.8 KB
ENCFF412ETL.bed bed (IDR thresholded peaks) 15.8 KB
ENCFF423VMC.bigWig bigWig (fold change over control) 819.6 MB
ENCFF472NST.bigBed bigBed (optimal IDR thresholded peaks) 206.6 KB
ENCFF477CSW.bigWig bigWig (signal p-value) 499.9 MB
ENCFF482MDB.bigWig bigWig (signal p-value) 973.7 MB
ENCFF493LIW.bed bed (IDR ranked peaks) 1.8 MB
ENCFF497EQS.bed bed (peaks and background as input for IDR) 4.9 MB
ENCFF507YYD.bed bed (IDR ranked peaks) 4.5 MB
ENCFF509CZV.bigBed bigBed (peaks and background as input for IDR) 12.3 MB
ENCFF509TID.bed bed (IDR ranked peaks) 3.9 MB
ENCFF531POO.fastq fastq (reads) 811.9 MB
ENCFF553QQK.bigWig bigWig (fold change over control) 489.8 MB
ENCFF586ZST.fastq fastq (reads) 1.5 GB
ENCFF592NWC.bigBed bigBed (peaks and background as input for IDR) 12.5 MB
ENCFF601GSA.bigWig bigWig (signal p-value) 1010.0 MB
ENCFF605CXY.bigWig bigWig (signal p-value) 498.0 MB
ENCFF607XLP.bam bam (unfiltered alignments) 2.1 GB
ENCFF611CVN.bigBed bigBed (peaks and background as input for IDR) 12.4 MB
ENCFF623DYE.bed bed (conservative IDR thresholded peaks) 53.2 KB
ENCFF630MSZ.bed bed (conservative IDR thresholded peaks) 52.0 KB
ENCFF639IOF.bigBed bigBed (IDR thresholded peaks) 90.7 KB
ENCFF673SKG.bed bed (peaks and background as input for IDR) 6.3 MB
ENCFF685RJG.bed bed (peaks and background as input for IDR) 6.3 MB
ENCFF694HVC.bed bed (peaks and background as input for IDR) 5.1 MB
ENCFF720KWW.bam bam (unfiltered alignments) 1.8 GB
ENCFF744SCS.fastq fastq (reads) 661.6 MB
ENCFF776NZQ.bam bam (alignments) 510.4 MB
ENCFF790DOB.bed bed (IDR thresholded peaks) 24.7 KB
ENCFF793YIO.bed bed (conservative IDR thresholded peaks) 50.3 KB
ENCFF803CWD.bed bed (IDR thresholded peaks) 79.9 KB
ENCFF842EBN.bigWig bigWig (signal p-value) 594.8 MB
ENCFF848PEZ.bam bam (alignments) 511.4 MB
ENCFF850LIO.bigWig bigWig (signal p-value) 890.3 MB
ENCFF856MEV.bigWig bigWig (fold change over control) 315.3 MB
ENCFF875ZPV.bed bed (optimal IDR thresholded peaks) 84.7 KB
ENCFF885UDL.bam bam (alignments) 511.1 MB
ENCFF887JKP.bam bam (unfiltered alignments) 2.1 GB
ENCFF897ZXQ.bigWig bigWig (fold change over control) 479.2 MB
ENCFF908HDA.bed bed (optimal IDR thresholded peaks) 82.2 KB
ENCFF924OVI.bigBed bigBed (conservative IDR thresholded peaks) 150.8 KB
ENCFF935TCV.bigWig bigWig (signal p-value) 972.3 MB
ENCFF992OBB.fastq fastq (reads) 1.2 GB
ENCSR151NQL ENCSR · via encode_api

AGO2 ChIP-seq in HepG2

Homo sapiens

64 data files
FileTypeSize
ENCFF010SVM.bigWig bigWig (fold change over control) 818.9 MB
ENCFF035KVZ.bam bam (unfiltered alignments) 1.0 GB
ENCFF083TUJ.bigBed bigBed (conservative IDR thresholded peaks) 1.6 MB
ENCFF097LEQ.bigWig bigWig (fold change over control) 818.2 MB
ENCFF101OYM.bed bed (peaks and background as input for IDR) 6.4 MB
ENCFF103EYP.bigWig bigWig (signal p-value) 468.7 MB
ENCFF111QQE.bigWig bigWig (fold change over control) 491.5 MB
ENCFF141NVO.bigBed bigBed (optimal IDR thresholded peaks) 1.6 MB
ENCFF201NAO.bed bed (peaks and background as input for IDR) 6.4 MB
ENCFF209ZGU.bam bam (alignments) 505.1 MB
ENCFF215SIW.bigWig bigWig (fold change over control) 349.4 MB
ENCFF223LSB.bed bed (IDR ranked peaks) 8.4 MB
ENCFF230VTM.bed bed (IDR ranked peaks) 8.3 MB
ENCFF231FLV.bigBed bigBed (peaks and background as input for IDR) 11.2 MB
ENCFF245KXX.bigWig bigWig (fold change over control) 362.5 MB
ENCFF251XXO.fastq fastq (reads) 873.5 MB
ENCFF252VFI.bigBed bigBed (conservative IDR thresholded peaks) 1.6 MB
ENCFF266ZTS.bam bam (alignments) 534.3 MB
ENCFF282BTD.bed bed (IDR ranked peaks) 9.5 MB
ENCFF290KWI.bigBed bigBed (peaks and background as input for IDR) 11.0 MB
ENCFF295ZNT.bigBed bigBed (peaks and background as input for IDR) 11.3 MB
ENCFF309WTZ.bigWig bigWig (signal p-value) 878.5 MB
ENCFF313NNG.bigWig bigWig (signal p-value) 839.8 MB
ENCFF333DOX.bed bed (peaks and background as input for IDR) 6.7 MB
ENCFF348MDS.bed bed (conservative IDR thresholded peaks) 783.2 KB
ENCFF352TDU.bed bed (IDR thresholded peaks) 540.1 KB
ENCFF361PHT.bigWig bigWig (signal p-value) 770.3 MB
ENCFF382ZIG.bed bed (conservative IDR thresholded peaks) 775.8 KB
ENCFF385YDL.bed bed (peaks and background as input for IDR) 6.5 MB
ENCFF401ZDI.bigBed bigBed (conservative IDR thresholded peaks) 1.6 MB
ENCFF420CJD.bigBed bigBed (peaks and background as input for IDR) 11.2 MB
ENCFF426UGN.bam bam (alignments) 529.1 MB
ENCFF443ZCQ.bed bed (peaks and background as input for IDR) 6.3 MB
ENCFF450MDW.bigWig bigWig (signal p-value) 489.5 MB
ENCFF465FII.bed bed (optimal IDR thresholded peaks) 790.8 KB
ENCFF495VQA.bigWig bigWig (signal p-value) 762.5 MB
ENCFF504KFK.bed bed (IDR thresholded peaks) 535.6 KB
ENCFF504UCS.bigWig bigWig (fold change over control) 349.8 MB
ENCFF512OQM.bam bam (unfiltered alignments) 1.0 GB
ENCFF535XIF.bigWig bigWig (signal p-value) 487.3 MB
ENCFF546VED.bigWig bigWig (fold change over control) 519.9 MB
ENCFF598NFT.bed bed (IDR thresholded peaks) 777.6 KB
ENCFF622VSV.bed bed (optimal IDR thresholded peaks) 792.8 KB
ENCFF637GAD.bam bam (alignments) 504.3 MB
ENCFF651CWU.bigWig bigWig (signal p-value) 507.2 MB
ENCFF665ADO.bigBed bigBed (peaks and background as input for IDR) 11.1 MB
ENCFF702OYB.bigBed bigBed (IDR thresholded peaks) 1.2 MB
ENCFF720IUW.bigWig bigWig (signal p-value) 933.8 MB
ENCFF724GZW.fastq fastq (reads) 789.0 MB
ENCFF741WVA.bam bam (alignments) 528.2 MB
ENCFF744WUO.bam bam (unfiltered alignments) 1.0 GB
ENCFF762PXH.bed bed (peaks and background as input for IDR) 6.7 MB
ENCFF768GGW.bigWig bigWig (fold change over control) 363.2 MB
ENCFF773YDL.bigBed bigBed (optimal IDR thresholded peaks) 1.6 MB
ENCFF780SHQ.bigBed bigBed (peaks and background as input for IDR) 11.3 MB
ENCFF794BAU.bam bam (unfiltered alignments) 969.9 MB
ENCFF808CTN.bigWig bigWig (fold change over control) 805.7 MB
ENCFF848FVO.bed bed (conservative IDR thresholded peaks) 774.7 KB
ENCFF863NLT.bam bam (unfiltered alignments) 955.6 MB
ENCFF871OKQ.bed bed (IDR ranked peaks) 9.4 MB
ENCFF877NNQ.bigBed bigBed (IDR thresholded peaks) 1.6 MB
ENCFF907AZS.bam bam (unfiltered alignments) 971.4 MB
ENCFF912MCA.bam bam (alignments) 559.9 MB
ENCFF998ZFC.bigBed bigBed (IDR thresholded peaks) 1.2 MB
ENCSR822LBD ENCSR · via encode_api

RBFOX2 ChIP-seq in K562

Homo sapiens

64 data files
FileTypeSize
ENCFF019KNC.bigBed bigBed (IDR thresholded peaks) 1.6 MB
ENCFF027DFU.bigBed bigBed (peaks and background as input for IDR) 10.7 MB
ENCFF028KSH.bigBed bigBed (peaks and background as input for IDR) 11.1 MB
ENCFF051NQJ.bigWig bigWig (fold change over control) 567.6 MB
ENCFF059MVL.bed bed (conservative IDR thresholded peaks) 964.2 KB
ENCFF081QLL.bed bed (IDR thresholded peaks) 791.5 KB
ENCFF102HGA.bed bed (peaks and background as input for IDR) 6.7 MB
ENCFF120IDE.bed bed (optimal IDR thresholded peaks) 975.0 KB
ENCFF140GXH.bed bed (conservative IDR thresholded peaks) 942.8 KB
ENCFF146CEH.bam bam (alignments) 440.1 MB
ENCFF150BYW.fastq fastq (reads) 802.8 MB
ENCFF155BGN.bigWig bigWig (signal p-value) 452.5 MB
ENCFF156OFZ.bam bam (alignments) 476.8 MB
ENCFF161VHM.bam bam (alignments) 420.4 MB
ENCFF169LXA.bed bed (IDR ranked peaks) 6.9 MB
ENCFF189IDV.bigWig bigWig (fold change over control) 252.0 MB
ENCFF192IAK.bam bam (unfiltered alignments) 871.3 MB
ENCFF196WTG.bigBed bigBed (optimal IDR thresholded peaks) 1.8 MB
ENCFF206PDH.bigWig bigWig (signal p-value) 833.8 MB
ENCFF232ASB.bed bed (optimal IDR thresholded peaks) 984.9 KB
ENCFF240ELJ.bigWig bigWig (fold change over control) 270.1 MB
ENCFF247OHX.bam bam (unfiltered alignments) 1022.4 MB
ENCFF284BNL.bed bed (IDR ranked peaks) 6.3 MB
ENCFF294HYU.bed bed (peaks and background as input for IDR) 5.9 MB
ENCFF309FGP.bed bed (peaks and background as input for IDR) 6.1 MB
ENCFF309KWD.bed bed (IDR thresholded peaks) 742.6 KB
ENCFF314GFC.bed bed (peaks and background as input for IDR) 6.1 MB
ENCFF345RZC.bam bam (unfiltered alignments) 1010.6 MB
ENCFF384XHS.bigWig bigWig (signal p-value) 431.8 MB
ENCFF425VIX.bam bam (alignments) 477.6 MB
ENCFF442XYK.bigBed bigBed (conservative IDR thresholded peaks) 1.8 MB
ENCFF443CVW.bigWig bigWig (signal p-value) 780.2 MB
ENCFF450WHV.bigBed bigBed (optimal IDR thresholded peaks) 1.8 MB
ENCFF453JCJ.fastq fastq (reads) 952.7 MB
ENCFF466CZE.bigWig bigWig (signal p-value) 772.6 MB
ENCFF470QLV.bed bed (peaks and background as input for IDR) 5.9 MB
ENCFF491VAU.bam bam (alignments) 499.4 MB
ENCFF520WLS.bam bam (unfiltered alignments) 871.5 MB
ENCFF538ACI.bed bed (IDR thresholded peaks) 987.8 KB
ENCFF562UGM.bed bed (IDR ranked peaks) 9.4 MB
ENCFF570RKI.bam bam (unfiltered alignments) 1022.2 MB
ENCFF590JZV.bed bed (peaks and background as input for IDR) 6.6 MB
ENCFF600MKI.bigWig bigWig (fold change over control) 560.0 MB
ENCFF665GUF.bam bam (unfiltered alignments) 861.3 MB
ENCFF677XMK.bigBed bigBed (conservative IDR thresholded peaks) 1.8 MB
ENCFF758FDS.bigBed bigBed (peaks and background as input for IDR) 10.8 MB
ENCFF782SMH.bigBed bigBed (peaks and background as input for IDR) 11.0 MB
ENCFF793LSM.bigBed bigBed (conservative IDR thresholded peaks) 1.8 MB
ENCFF806OQG.bigBed bigBed (peaks and background as input for IDR) 11.1 MB
ENCFF821KXU.bigWig bigWig (fold change over control) 381.1 MB
ENCFF821XXA.bigWig bigWig (fold change over control) 576.1 MB
ENCFF825HZH.bigBed bigBed (peaks and background as input for IDR) 10.7 MB
ENCFF834PRZ.bed bed (conservative IDR thresholded peaks) 948.3 KB
ENCFF844IJR.bigBed bigBed (IDR thresholded peaks) 1.5 MB
ENCFF891FJT.bigWig bigWig (fold change over control) 345.8 MB
ENCFF908TUZ.bigWig bigWig (signal p-value) 494.5 MB
ENCFF938LDN.bam bam (alignments) 421.1 MB
ENCFF938QBJ.bigWig bigWig (signal p-value) 444.8 MB
ENCFF967GRF.bigBed bigBed (IDR thresholded peaks) 1.8 MB
ENCFF977TIV.bigWig bigWig (signal p-value) 698.1 MB
ENCFF979NUD.bigWig bigWig (fold change over control) 268.0 MB
ENCFF980LKI.bigWig bigWig (signal p-value) 641.6 MB
ENCFF985IJP.bigWig bigWig (fold change over control) 251.0 MB
ENCFF990IYR.bed bed (IDR ranked peaks) 9.4 MB
ENCSR283ZRI ENCSR · via encode_api

POLR2G ChIP-seq in K562

Homo sapiens

64 data files
FileTypeSize
ENCFF015NSS.bigWig bigWig (fold change over control) 210.1 MB
ENCFF032MPI.bigWig bigWig (fold change over control) 268.7 MB
ENCFF047BLG.bigBed bigBed (IDR thresholded peaks) 2.0 MB
ENCFF082TXS.bigBed bigBed (optimal IDR thresholded peaks) 2.0 MB
ENCFF085WDR.bigWig bigWig (signal p-value) 714.9 MB
ENCFF102MCA.bed bed (peaks and background as input for IDR) 5.9 MB
ENCFF106SGM.bigWig bigWig (signal p-value) 444.7 MB
ENCFF116IUC.bam bam (alignments) 404.1 MB
ENCFF121RZC.bam bam (alignments) 386.5 MB
ENCFF151PMX.bigWig bigWig (fold change over control) 411.9 MB
ENCFF215VGS.bigWig bigWig (signal p-value) 667.5 MB
ENCFF226OGI.bigWig bigWig (fold change over control) 185.3 MB
ENCFF236RMG.bigBed bigBed (peaks and background as input for IDR) 10.5 MB
ENCFF248FID.bam bam (unfiltered alignments) 785.9 MB
ENCFF260USW.bed bed (peaks and background as input for IDR) 5.7 MB
ENCFF273EYJ.bed bed (optimal IDR thresholded peaks) 1000.7 KB
ENCFF274KYK.bed bed (peaks and background as input for IDR) 6.5 MB
ENCFF274TIG.bam bam (unfiltered alignments) 777.6 MB
ENCFF283CUY.bed bed (optimal IDR thresholded peaks) 998.9 KB
ENCFF288DEY.bed bed (IDR thresholded peaks) 707.2 KB
ENCFF301BHU.bigWig bigWig (signal p-value) 709.2 MB
ENCFF314OJG.bam bam (alignments) 371.6 MB
ENCFF314SZG.bigWig bigWig (fold change over control) 210.2 MB
ENCFF319SPS.bam bam (unfiltered alignments) 838.5 MB
ENCFF334OXO.bam bam (unfiltered alignments) 847.9 MB
ENCFF341UPU.bed bed (IDR ranked peaks) 6.8 MB
ENCFF355VVD.fastq fastq (reads) 796.5 MB
ENCFF356RYY.fastq fastq (reads) 733.1 MB
ENCFF363HBF.bigWig bigWig (signal p-value) 404.2 MB
ENCFF407HBE.bed bed (conservative IDR thresholded peaks) 980.8 KB
ENCFF413LLO.bed bed (IDR thresholded peaks) 1002.5 KB
ENCFF429REA.bigBed bigBed (peaks and background as input for IDR) 10.4 MB
ENCFF433VMF.bigBed bigBed (peaks and background as input for IDR) 10.6 MB
ENCFF484EVD.bigWig bigWig (signal p-value) 770.2 MB
ENCFF497OUR.bed bed (IDR ranked peaks) 9.8 MB
ENCFF540CYY.bigWig bigWig (fold change over control) 414.9 MB
ENCFF556PHC.bed bed (IDR ranked peaks) 6.3 MB
ENCFF574LQA.bigBed bigBed (peaks and background as input for IDR) 10.5 MB
ENCFF589PPB.bam bam (unfiltered alignments) 786.2 MB
ENCFF603VZJ.bigBed bigBed (conservative IDR thresholded peaks) 1.9 MB
ENCFF614CGD.bigBed bigBed (conservative IDR thresholded peaks) 2.0 MB
ENCFF633IKF.bam bam (unfiltered alignments) 847.7 MB
ENCFF635IJT.bam bam (alignments) 355.8 MB
ENCFF648YPL.bigBed bigBed (optimal IDR thresholded peaks) 2.0 MB
ENCFF659APN.bigBed bigBed (IDR thresholded peaks) 1.7 MB
ENCFF659OHO.bigWig bigWig (signal p-value) 456.0 MB
ENCFF663NYD.bed bed (peaks and background as input for IDR) 6.5 MB
ENCFF665FQH.bigWig bigWig (fold change over control) 186.7 MB
ENCFF693PVI.bigBed bigBed (conservative IDR thresholded peaks) 1.9 MB
ENCFF720NRD.bam bam (alignments) 387.2 MB
ENCFF750RMQ.bigWig bigWig (signal p-value) 680.1 MB
ENCFF779KUH.bigBed bigBed (peaks and background as input for IDR) 10.6 MB
ENCFF781FPI.bed bed (IDR ranked peaks) 10.0 MB
ENCFF782XCM.bigWig bigWig (signal p-value) 508.8 MB
ENCFF791JTK.bed bed (conservative IDR thresholded peaks) 965.9 KB
ENCFF791LFD.bed bed (peaks and background as input for IDR) 5.9 MB
ENCFF832NSN.bigBed bigBed (IDR thresholded peaks) 1.6 MB
ENCFF846OXY.bigBed bigBed (peaks and background as input for IDR) 10.7 MB
ENCFF852IKH.bed bed (conservative IDR thresholded peaks) 966.5 KB
ENCFF856WKJ.bed bed (peaks and background as input for IDR) 6.1 MB
ENCFF873HRN.bigWig bigWig (fold change over control) 278.9 MB
ENCFF923SQO.bigWig bigWig (fold change over control) 429.2 MB
ENCFF927RYQ.bed bed (IDR thresholded peaks) 769.1 KB
ENCFF958KLM.bam bam (alignments) 356.5 MB
ENCSR047LSJ ENCSR · via encode_api

TAF15 ChIP-seq in K562

Homo sapiens

64 data files
FileTypeSize
ENCFF010DBI.bed bed (peaks and background as input for IDR) 4.5 MB
ENCFF017LTH.bigWig bigWig (signal p-value) 446.4 MB
ENCFF017MQV.bigBed bigBed (IDR thresholded peaks) 92.8 KB
ENCFF030GJB.bigBed bigBed (peaks and background as input for IDR) 10.5 MB
ENCFF076NZJ.bam bam (unfiltered alignments) 921.9 MB
ENCFF095GRH.bigBed bigBed (peaks and background as input for IDR) 12.8 MB
ENCFF133HAS.bigBed bigBed (conservative IDR thresholded peaks) 90.7 KB
ENCFF139MMQ.bigBed bigBed (IDR thresholded peaks) 82.5 KB
ENCFF148EMJ.bigWig bigWig (signal p-value) 820.8 MB
ENCFF151HYU.bed bed (peaks and background as input for IDR) 6.1 MB
ENCFF176TKM.bigBed bigBed (peaks and background as input for IDR) 12.5 MB
ENCFF178DJB.bed bed (IDR thresholded peaks) 6.4 KB
ENCFF178QOE.bam bam (unfiltered alignments) 759.3 MB
ENCFF183YMK.bigWig bigWig (fold change over control) 358.2 MB
ENCFF189KCM.bigBed bigBed (peaks and background as input for IDR) 10.4 MB
ENCFF217MUJ.bigWig bigWig (fold change over control) 467.9 MB
ENCFF224GTG.bam bam (alignments) 487.3 MB
ENCFF231KJG.bed bed (IDR ranked peaks) 1.4 MB
ENCFF306AZB.bam bam (unfiltered alignments) 747.0 MB
ENCFF331JDA.bigWig bigWig (signal p-value) 489.6 MB
ENCFF337IVP.bed bed (conservative IDR thresholded peaks) 11.0 KB
ENCFF346NMC.bed bed (conservative IDR thresholded peaks) 9.0 KB
ENCFF392KOM.bigBed bigBed (optimal IDR thresholded peaks) 104.7 KB
ENCFF402PFE.bigBed bigBed (peaks and background as input for IDR) 12.8 MB
ENCFF405IFO.bigWig bigWig (fold change over control) 800.2 MB
ENCFF408AOV.bam bam (unfiltered alignments) 925.3 MB
ENCFF408GAN.bam bam (alignments) 486.7 MB
ENCFF409XKG.bigWig bigWig (signal p-value) 1004.6 MB
ENCFF455LGO.bigWig bigWig (signal p-value) 749.4 MB
ENCFF477ZCJ.bigBed bigBed (peaks and background as input for IDR) 10.5 MB
ENCFF480OSG.bed bed (IDR ranked peaks) 2.8 MB
ENCFF485IHI.fastq fastq (reads) 561.5 MB
ENCFF485PMQ.bigWig bigWig (fold change over control) 320.0 MB
ENCFF501RLO.bigBed bigBed (conservative IDR thresholded peaks) 93.8 KB
ENCFF505PKX.bed bed (IDR thresholded peaks) 3.5 KB
ENCFF540MEH.bigWig bigWig (fold change over control) 514.7 MB
ENCFF547PES.bed bed (IDR thresholded peaks) 14.3 KB
ENCFF574SQO.bam bam (unfiltered alignments) 910.0 MB
ENCFF603GHG.bed bed (peaks and background as input for IDR) 4.7 MB
ENCFF617CAZ.bed bed (optimal IDR thresholded peaks) 14.4 KB
ENCFF629KZP.bigWig bigWig (signal p-value) 481.0 MB
ENCFF641HRH.bam bam (alignments) 470.7 MB
ENCFF641OBF.bam bam (alignments) 447.9 MB
ENCFF646NOB.bed bed (IDR ranked peaks) 757.3 KB
ENCFF672AMR.bigBed bigBed (IDR thresholded peaks) 76.9 KB
ENCFF673ROZ.bigWig bigWig (signal p-value) 929.3 MB
ENCFF676SIM.fastq fastq (reads) 701.8 MB
ENCFF690XXK.bed bed (peaks and background as input for IDR) 4.8 MB
ENCFF710LLF.bed bed (optimal IDR thresholded peaks) 13.1 KB
ENCFF713VPX.bigBed bigBed (conservative IDR thresholded peaks) 93.0 KB
ENCFF783FTH.bigWig bigWig (signal p-value) 433.7 MB
ENCFF789HHG.bed bed (peaks and background as input for IDR) 4.6 MB
ENCFF816BOD.bed bed (IDR ranked peaks) 3.0 MB
ENCFF818HIH.bam bam (alignments) 448.5 MB
ENCFF890FHB.bigWig bigWig (fold change over control) 319.6 MB
ENCFF927TRB.bigWig bigWig (signal p-value) 813.0 MB
ENCFF932TEL.bigBed bigBed (optimal IDR thresholded peaks) 103.6 KB
ENCFF935VKI.bigWig bigWig (fold change over control) 799.3 MB
ENCFF973ZPV.bam bam (alignments) 502.5 MB
ENCFF974IYP.bam bam (unfiltered alignments) 761.5 MB
ENCFF975SNX.bed bed (conservative IDR thresholded peaks) 10.7 KB
ENCFF979TPQ.bed bed (peaks and background as input for IDR) 5.9 MB
ENCFF985GIN.bigWig bigWig (fold change over control) 364.9 MB
ENCFF998ZUC.bigWig bigWig (fold change over control) 771.2 MB
ENCSR031URL ENCSR · via encode_api

XRCC5 ChIP-seq in HepG2

Homo sapiens

64 data files
FileTypeSize
ENCFF027RDE.bigWig bigWig (signal p-value) 661.7 MB
ENCFF044XKH.bam bam (unfiltered alignments) 1.3 GB
ENCFF051VIU.bigBed bigBed (conservative IDR thresholded peaks) 952.1 KB
ENCFF059LDO.bam bam (unfiltered alignments) 1.3 GB
ENCFF088HIS.fastq fastq (reads) 991.8 MB
ENCFF117KAP.bam bam (alignments) 711.3 MB
ENCFF131SCG.bed bed (peaks and background as input for IDR) 6.2 MB
ENCFF157JVZ.bam bam (alignments) 815.4 MB
ENCFF163RUV.bed bed (peaks and background as input for IDR) 6.2 MB
ENCFF195HJZ.bam bam (alignments) 773.6 MB
ENCFF199QOE.bigBed bigBed (peaks and background as input for IDR) 12.2 MB
ENCFF199TUN.bed bed (peaks and background as input for IDR) 6.7 MB
ENCFF235QJH.bed bed (IDR ranked peaks) 5.9 MB
ENCFF235VSC.bigBed bigBed (IDR thresholded peaks) 1.0 MB
ENCFF241OMA.bam bam (alignments) 712.0 MB
ENCFF244PJM.bed bed (conservative IDR thresholded peaks) 495.7 KB
ENCFF252JSZ.bigBed bigBed (IDR thresholded peaks) 473.3 KB
ENCFF265QTC.bam bam (unfiltered alignments) 1.1 GB
ENCFF281XGE.bigBed bigBed (optimal IDR thresholded peaks) 1.0 MB
ENCFF292AJA.bigWig bigWig (signal p-value) 922.8 MB
ENCFF305SZV.bed bed (conservative IDR thresholded peaks) 537.2 KB
ENCFF329ZXO.bed bed (peaks and background as input for IDR) 6.3 MB
ENCFF330PDO.bigBed bigBed (optimal IDR thresholded peaks) 1.0 MB
ENCFF359XBS.fastq fastq (reads) 854.7 MB
ENCFF383DHE.bigWig bigWig (fold change over control) 963.3 MB
ENCFF390KAD.bigBed bigBed (peaks and background as input for IDR) 12.3 MB
ENCFF406KDQ.bigWig bigWig (fold change over control) 1004.4 MB
ENCFF413PTD.bigBed bigBed (peaks and background as input for IDR) 12.1 MB
ENCFF415ITA.bigBed bigBed (conservative IDR thresholded peaks) 985.5 KB
ENCFF420LJV.bam bam (alignments) 886.4 MB
ENCFF437EJV.bam bam (unfiltered alignments) 1.1 GB
ENCFF461AQB.bigWig bigWig (fold change over control) 457.9 MB
ENCFF466CIM.bigBed bigBed (peaks and background as input for IDR) 12.2 MB
ENCFF469DLB.bam bam (unfiltered alignments) 1.3 GB
ENCFF486AQR.bigWig bigWig (fold change over control) 465.3 MB
ENCFF486TEV.bigWig bigWig (fold change over control) 587.1 MB
ENCFF487DMS.bigBed bigBed (IDR thresholded peaks) 648.3 KB
ENCFF504BWJ.bed bed (IDR ranked peaks) 6.9 MB
ENCFF566FCI.bigWig bigWig (signal p-value) 633.7 MB
ENCFF570HIS.bed bed (IDR thresholded peaks) 307.9 KB
ENCFF631VBZ.bed bed (peaks and background as input for IDR) 6.3 MB
ENCFF633RHE.bed bed (peaks and background as input for IDR) 6.8 MB
ENCFF640VSD.bed bed (IDR ranked peaks) 6.2 MB
ENCFF644QJO.bigWig bigWig (fold change over control) 473.5 MB
ENCFF668MHE.bigWig bigWig (fold change over control) 448.0 MB
ENCFF676ART.bed bed (IDR thresholded peaks) 270.3 KB
ENCFF680LVJ.bigBed bigBed (conservative IDR thresholded peaks) 1.0 MB
ENCFF705LQZ.bam bam (alignments) 814.7 MB
ENCFF749INU.bigWig bigWig (signal p-value) 601.7 MB
ENCFF761MRO.bigBed bigBed (peaks and background as input for IDR) 12.2 MB
ENCFF775MER.bigWig bigWig (signal p-value) 564.3 MB
ENCFF778OGY.bigWig bigWig (fold change over control) 946.0 MB
ENCFF790ZAQ.bed bed (optimal IDR thresholded peaks) 553.6 KB
ENCFF810PVS.bigBed bigBed (peaks and background as input for IDR) 12.2 MB
ENCFF837IBY.bed bed (conservative IDR thresholded peaks) 475.9 KB
ENCFF838DXO.bigWig bigWig (signal p-value) 1.0 GB
ENCFF844AMK.bed bed (IDR thresholded peaks) 530.8 KB
ENCFF845GIK.bed bed (optimal IDR thresholded peaks) 527.5 KB
ENCFF854OAL.bigWig bigWig (fold change over control) 658.1 MB
ENCFF874HFW.bigWig bigWig (signal p-value) 966.8 MB
ENCFF882MLI.bam bam (unfiltered alignments) 1.1 GB
ENCFF883RME.bigWig bigWig (signal p-value) 989.4 MB
ENCFF908WLI.bed bed (IDR ranked peaks) 6.9 MB
ENCFF948HBY.bigWig bigWig (signal p-value) 821.9 MB
ENCSR791OZM ENCSR · via encode_api

RBM25 ChIP-seq in K562

Homo sapiens

66 data files
FileTypeSize
ENCFF011DOM.bigWig bigWig (signal p-value) 704.6 MB
ENCFF031ANY.bigBed bigBed (peaks and background as input for IDR) 10.8 MB
ENCFF055SDX.bigBed bigBed (peaks and background as input for IDR) 13.3 MB
ENCFF068IHC.bam bam (unfiltered alignments) 1.2 GB
ENCFF077TWK.bigBed bigBed (peaks and background as input for IDR) 10.9 MB
ENCFF079IZF.fastq fastq (reads) 403.2 MB
ENCFF079KBD.bed bed (IDR ranked peaks) 4.1 MB
ENCFF102XVH.bed bed (optimal IDR thresholded peaks) 821.3 KB
ENCFF104JRH.bam bam (unfiltered alignments) 1.2 GB
ENCFF113JKF.bigWig bigWig (signal p-value) 671.0 MB
ENCFF151HYJ.bigBed bigBed (IDR thresholded peaks) 918.1 KB
ENCFF180WYS.bam bam (alignments) 579.2 MB
ENCFF182RFF.bed bed (IDR thresholded peaks) 555.9 KB
ENCFF199EYR.bed bed (peaks and background as input for IDR) 6.5 MB
ENCFF213WHL.bigBed bigBed (conservative IDR thresholded peaks) 1.6 MB
ENCFF214QGI.bam bam (alignments) 635.8 MB
ENCFF216VGS.bed bed (conservative IDR thresholded peaks) 838.9 KB
ENCFF218VKE.bigWig bigWig (fold change over control) 1.0 GB
ENCFF248CGR.bigBed bigBed (optimal IDR thresholded peaks) 1.6 MB
ENCFF248ZYN.bigWig bigWig (signal p-value) 1.1 GB
ENCFF252IOK.bigBed bigBed (optimal IDR thresholded peaks) 1.6 MB
ENCFF258BLV.bigBed bigBed (peaks and background as input for IDR) 10.8 MB
ENCFF261HID.bigBed bigBed (IDR thresholded peaks) 891.7 KB
ENCFF281TJW.bigWig bigWig (fold change over control) 1.0 GB
ENCFF353CFY.bigWig bigWig (fold change over control) 685.3 MB
ENCFF372LNZ.bed bed (conservative IDR thresholded peaks) 801.5 KB
ENCFF414UHE.bigWig bigWig (signal p-value) 932.6 MB
ENCFF451ACZ.bigWig bigWig (fold change over control) 475.6 MB
ENCFF461GUF.bed bed (IDR ranked peaks) 5.7 MB
ENCFF479WQQ.bam bam (unfiltered alignments) 1.2 GB
ENCFF492QXQ.bigWig bigWig (fold change over control) 476.3 MB
ENCFF513SVQ.bam bam (unfiltered alignments) 1.1 GB
ENCFF545YLD.bigWig bigWig (signal p-value) 951.2 MB
ENCFF562TIU.bed bed (peaks and background as input for IDR) 6.5 MB
ENCFF562ZMN.fastq fastq (reads) 752.2 MB
ENCFF575DBM.bed bed (IDR thresholded peaks) 535.8 KB
ENCFF586HOB.bigWig bigWig (fold change over control) 470.1 MB
ENCFF590KDQ.bigWig bigWig (signal p-value) 623.7 MB
ENCFF609FFL.bam bam (alignments) 635.3 MB
ENCFF639JRY.bed bed (IDR ranked peaks) 4.0 MB
ENCFF673CKZ.bam bam (unfiltered alignments) 1.2 GB
ENCFF674VUM.bigWig bigWig (fold change over control) 726.5 MB
ENCFF680WBN.bed bed (optimal IDR thresholded peaks) 834.1 KB
ENCFF681CMB.bed bed (peaks and background as input for IDR) 5.5 MB
ENCFF752TPO.fastq fastq (reads) 752.6 MB
ENCFF765PXM.bigBed bigBed (conservative IDR thresholded peaks) 1.6 MB
ENCFF769FPU.bigBed bigBed (peaks and background as input for IDR) 10.9 MB
ENCFF770ZXV.bed bed (IDR ranked peaks) 5.8 MB
ENCFF786GFI.bed bed (peaks and background as input for IDR) 5.4 MB
ENCFF788PVG.bigBed bigBed (conservative IDR thresholded peaks) 1.6 MB
ENCFF800WHJ.fastq fastq (reads) 431.2 MB
ENCFF818ZFX.bigWig bigWig (signal p-value) 1.2 GB
ENCFF821EKT.bam bam (unfiltered alignments) 1.1 GB
ENCFF821RCB.bigWig bigWig (fold change over control) 1.0 GB
ENCFF849VEO.bed bed (IDR thresholded peaks) 843.5 KB
ENCFF897BPO.bed bed (peaks and background as input for IDR) 5.4 MB
ENCFF920UTV.bigWig bigWig (signal p-value) 1.2 GB
ENCFF920XYR.bigBed bigBed (peaks and background as input for IDR) 13.3 MB
ENCFF924YHM.bam bam (alignments) 664.4 MB
ENCFF932EHN.bam bam (alignments) 606.3 MB
ENCFF933VEZ.bigWig bigWig (fold change over control) 472.7 MB
ENCFF940QNN.bigWig bigWig (signal p-value) 634.4 MB
ENCFF957ORK.bigBed bigBed (IDR thresholded peaks) 1.6 MB
ENCFF966SQD.bed bed (conservative IDR thresholded peaks) 807.3 KB
ENCFF970GFH.bed bed (peaks and background as input for IDR) 5.5 MB
ENCFF998LKC.bam bam (alignments) 578.7 MB
ENCSR465BWW ENCSR · via encode_api

SRSF1 ChIP-seq in HepG2

Homo sapiens

64 data files
FileTypeSize
ENCFF007MQI.bigWig bigWig (signal p-value) 392.5 MB
ENCFF026YWK.bam bam (alignments) 407.9 MB
ENCFF044ACD.fastq fastq (reads) 788.8 MB
ENCFF046BRA.bed bed (optimal IDR thresholded peaks) 199.2 KB
ENCFF055ILN.bigBed bigBed (IDR thresholded peaks) 404.5 KB
ENCFF055WLP.bam bam (unfiltered alignments) 901.0 MB
ENCFF058WGO.bigBed bigBed (peaks and background as input for IDR) 12.4 MB
ENCFF068JHR.bigWig bigWig (signal p-value) 677.4 MB
ENCFF073CHY.bed bed (IDR thresholded peaks) 180.9 KB
ENCFF112UFC.bam bam (alignments) 408.5 MB
ENCFF130POB.bed bed (peaks and background as input for IDR) 5.3 MB
ENCFF131DDP.bed bed (optimal IDR thresholded peaks) 202.5 KB
ENCFF143VYB.bed bed (peaks and background as input for IDR) 6.6 MB
ENCFF160DAF.bigBed bigBed (peaks and background as input for IDR) 12.4 MB
ENCFF210LTR.bed bed (IDR thresholded peaks) 68.1 KB
ENCFF248HDP.bigWig bigWig (fold change over control) 629.6 MB
ENCFF263RJD.bigBed bigBed (conservative IDR thresholded peaks) 421.8 KB
ENCFF309PCJ.bed bed (IDR ranked peaks) 4.8 MB
ENCFF313ATB.bed bed (peaks and background as input for IDR) 6.6 MB
ENCFF321UQK.bed bed (conservative IDR thresholded peaks) 188.2 KB
ENCFF340KLC.bed bed (IDR thresholded peaks) 50.1 KB
ENCFF341CGR.bigWig bigWig (signal p-value) 451.8 MB
ENCFF347VQM.bigWig bigWig (fold change over control) 280.2 MB
ENCFF355QWQ.bigBed bigBed (IDR thresholded peaks) 176.3 KB
ENCFF365FEO.bed bed (peaks and background as input for IDR) 5.4 MB
ENCFF376YFF.bigBed bigBed (peaks and background as input for IDR) 12.5 MB
ENCFF378JHP.bigWig bigWig (signal p-value) 657.4 MB
ENCFF430RNA.fastq fastq (reads) 719.6 MB
ENCFF449CKA.bigBed bigBed (optimal IDR thresholded peaks) 433.3 KB
ENCFF452ZUK.bigBed bigBed (peaks and background as input for IDR) 12.4 MB
ENCFF469VWD.bigWig bigWig (signal p-value) 623.5 MB
ENCFF492UUY.bigWig bigWig (signal p-value) 421.9 MB
ENCFF509LHO.bigBed bigBed (optimal IDR thresholded peaks) 438.5 KB
ENCFF524VYB.bed bed (conservative IDR thresholded peaks) 190.8 KB
ENCFF546XTE.bed bed (IDR ranked peaks) 2.1 MB
ENCFF587MXU.bed bed (peaks and background as input for IDR) 5.3 MB
ENCFF613VMS.bed bed (conservative IDR thresholded peaks) 191.9 KB
ENCFF637EIT.bigWig bigWig (fold change over control) 405.9 MB
ENCFF660KVS.bam bam (unfiltered alignments) 963.8 MB
ENCFF666RVW.bigBed bigBed (conservative IDR thresholded peaks) 416.1 KB
ENCFF675XWW.bed bed (peaks and background as input for IDR) 5.4 MB
ENCFF686JYL.bam bam (unfiltered alignments) 973.8 MB
ENCFF707YKE.bam bam (unfiltered alignments) 977.0 MB
ENCFF725FTW.bigWig bigWig (fold change over control) 633.8 MB
ENCFF730TAM.bigWig bigWig (fold change over control) 626.2 MB
ENCFF753EAN.bam bam (alignments) 401.8 MB
ENCFF759WKT.bam bam (alignments) 429.9 MB
ENCFF771QRW.bigWig bigWig (fold change over control) 272.8 MB
ENCFF773ABR.bam bam (unfiltered alignments) 903.1 MB
ENCFF788EYT.bed bed (IDR ranked peaks) 5.0 MB
ENCFF812MLJ.bam bam (unfiltered alignments) 892.4 MB
ENCFF832IYI.bigWig bigWig (signal p-value) 725.1 MB
ENCFF835HTG.bigWig bigWig (fold change over control) 271.6 MB
ENCFF849QZN.bigBed bigBed (conservative IDR thresholded peaks) 420.0 KB
ENCFF850NYN.bigBed bigBed (peaks and background as input for IDR) 12.3 MB
ENCFF869RRG.bigWig bigWig (fold change over control) 397.3 MB
ENCFF902NLB.bigWig bigWig (signal p-value) 462.5 MB
ENCFF907KLT.bam bam (alignments) 401.2 MB
ENCFF927MRT.bigWig bigWig (fold change over control) 282.4 MB
ENCFF931XPQ.bigWig bigWig (signal p-value) 760.3 MB
ENCFF942PWH.bam bam (alignments) 422.1 MB
ENCFF944LDA.bed bed (IDR ranked peaks) 2.8 MB
ENCFF967OUZ.bigBed bigBed (IDR thresholded peaks) 148.0 KB
ENCFF970WZX.bigBed bigBed (peaks and background as input for IDR) 12.3 MB
ENCSR112RNT ENCSR · via encode_api

HNRNPLL ChIP-seq in K562

Homo sapiens

64 data files
FileTypeSize
ENCFF013TMO.bigWig bigWig (signal p-value) 484.5 MB
ENCFF039WOE.bigBed bigBed (optimal IDR thresholded peaks) 599.9 KB
ENCFF069FZQ.bed bed (conservative IDR thresholded peaks) 248.4 KB
ENCFF087YUB.bed bed (peaks and background as input for IDR) 5.8 MB
ENCFF105DAM.bigWig bigWig (fold change over control) 394.4 MB
ENCFF107VTI.bed bed (conservative IDR thresholded peaks) 251.3 KB
ENCFF110XKX.bigWig bigWig (fold change over control) 676.0 MB
ENCFF122QSN.bed bed (optimal IDR thresholded peaks) 267.3 KB
ENCFF156DEC.bigBed bigBed (peaks and background as input for IDR) 12.4 MB
ENCFF201JRP.bam bam (unfiltered alignments) 2.0 GB
ENCFF209WQK.bigWig bigWig (fold change over control) 958.6 MB
ENCFF218JDY.fastq fastq (reads) 1.8 GB
ENCFF236YAX.bigBed bigBed (conservative IDR thresholded peaks) 570.3 KB
ENCFF247AFE.bam bam (unfiltered alignments) 2.0 GB
ENCFF250BGK.bigWig bigWig (fold change over control) 470.9 MB
ENCFF266ZJD.bigWig bigWig (signal p-value) 508.7 MB
ENCFF306RJB.bigBed bigBed (peaks and background as input for IDR) 12.4 MB
ENCFF311ZUL.bigBed bigBed (IDR thresholded peaks) 455.3 KB
ENCFF332AOU.bed bed (IDR ranked peaks) 5.0 MB
ENCFF342XVN.bam bam (unfiltered alignments) 2.0 GB
ENCFF343RFS.bed bed (peaks and background as input for IDR) 6.8 MB
ENCFF343WVR.bigWig bigWig (signal p-value) 527.9 MB
ENCFF345SRH.fastq fastq (reads) 1.7 GB
ENCFF355JQI.bed bed (IDR thresholded peaks) 185.1 KB
ENCFF391GBE.bed bed (peaks and background as input for IDR) 6.8 MB
ENCFF410PQV.bed bed (IDR ranked peaks) 5.0 MB
ENCFF424HUP.bam bam (unfiltered alignments) 2.0 GB
ENCFF431UER.bigBed bigBed (peaks and background as input for IDR) 12.5 MB
ENCFF433KJT.bed bed (peaks and background as input for IDR) 6.0 MB
ENCFF453NII.bigBed bigBed (conservative IDR thresholded peaks) 591.4 KB
ENCFF456UCJ.bigBed bigBed (peaks and background as input for IDR) 12.4 MB
ENCFF479DMK.bed bed (peaks and background as input for IDR) 6.0 MB
ENCFF481EBR.bigBed bigBed (peaks and background as input for IDR) 12.5 MB
ENCFF484FMV.bam bam (alignments) 755.5 MB
ENCFF541ZGX.bigBed bigBed (optimal IDR thresholded peaks) 600.6 KB
ENCFF549DWS.bed bed (IDR ranked peaks) 4.3 MB
ENCFF553QWJ.bigWig bigWig (signal p-value) 957.1 MB
ENCFF562PTA.bigWig bigWig (signal p-value) 550.1 MB
ENCFF598PWW.bigBed bigBed (IDR thresholded peaks) 596.4 KB
ENCFF642HUK.bigBed bigBed (conservative IDR thresholded peaks) 576.1 KB
ENCFF657LPF.bed bed (peaks and background as input for IDR) 5.8 MB
ENCFF662WPN.bed bed (optimal IDR thresholded peaks) 266.7 KB
ENCFF687PFH.bigWig bigWig (fold change over control) 549.8 MB
ENCFF694KEE.bigWig bigWig (signal p-value) 1.0 GB
ENCFF716JTW.bigBed bigBed (IDR thresholded peaks) 517.8 KB
ENCFF744STE.bam bam (alignments) 566.0 MB
ENCFF755UFL.bigBed bigBed (peaks and background as input for IDR) 12.5 MB
ENCFF768SVS.bam bam (alignments) 692.4 MB
ENCFF779GAL.bigWig bigWig (fold change over control) 976.9 MB
ENCFF788ABQ.bigWig bigWig (signal p-value) 825.7 MB
ENCFF804IEN.bigWig bigWig (signal p-value) 772.9 MB
ENCFF813BQH.bed bed (conservative IDR thresholded peaks) 261.3 KB
ENCFF813JWE.bam bam (alignments) 516.7 MB
ENCFF820XPW.bam bam (unfiltered alignments) 2.0 GB
ENCFF833ZNA.bed bed (IDR thresholded peaks) 265.2 KB
ENCFF852CUQ.bed bed (IDR ranked peaks) 4.1 MB
ENCFF867KPE.bed bed (IDR thresholded peaks) 220.5 KB
ENCFF886ZRM.bigWig bigWig (fold change over control) 470.4 MB
ENCFF903JDP.bigWig bigWig (signal p-value) 971.5 MB
ENCFF909BWR.bam bam (alignments) 516.0 MB
ENCFF921QEE.bam bam (unfiltered alignments) 1.9 GB
ENCFF973NPC.bigWig bigWig (fold change over control) 965.1 MB
ENCFF987VPA.bigWig bigWig (fold change over control) 388.8 MB
ENCFF994GKJ.bam bam (alignments) 691.5 MB
ENCSR784FYS ENCSR · via encode_api

RBFOX2 ChIP-seq in HepG2

Homo sapiens

64 data files
FileTypeSize
ENCFF014SMJ.bed bed (peaks and background as input for IDR) 5.5 MB
ENCFF025DFU.bigWig bigWig (fold change over control) 453.8 MB
ENCFF032PLO.bigWig bigWig (fold change over control) 205.7 MB
ENCFF033FQC.bigBed bigBed (IDR thresholded peaks) 1.4 MB
ENCFF033GIO.bam bam (alignments) 370.1 MB
ENCFF062TEI.bigBed bigBed (peaks and background as input for IDR) 9.7 MB
ENCFF092QIG.bigWig bigWig (signal p-value) 697.8 MB
ENCFF104WCC.bigBed bigBed (conservative IDR thresholded peaks) 1.6 MB
ENCFF122EKJ.bed bed (IDR thresholded peaks) 621.8 KB
ENCFF133SEO.bigWig bigWig (signal p-value) 780.3 MB
ENCFF141AHN.bam bam (unfiltered alignments) 570.7 MB
ENCFF154CXD.bigWig bigWig (signal p-value) 465.2 MB
ENCFF161NZP.bed bed (peaks and background as input for IDR) 5.7 MB
ENCFF176EEQ.bed bed (peaks and background as input for IDR) 6.5 MB
ENCFF198IJO.bam bam (alignments) 370.8 MB
ENCFF205XMX.bigWig bigWig (signal p-value) 867.0 MB
ENCFF216SBP.bigBed bigBed (peaks and background as input for IDR) 10.4 MB
ENCFF237RIA.bigWig bigWig (fold change over control) 204.8 MB
ENCFF251CER.fastq fastq (reads) 457.2 MB
ENCFF271UHE.bed bed (IDR ranked peaks) 6.8 MB
ENCFF275WHJ.bam bam (unfiltered alignments) 555.9 MB
ENCFF292DUC.bed bed (IDR thresholded peaks) 618.8 KB
ENCFF308IPC.bam bam (unfiltered alignments) 571.4 MB
ENCFF325DOM.bigBed bigBed (optimal IDR thresholded peaks) 1.7 MB
ENCFF339LAJ.bigBed bigBed (IDR thresholded peaks) 1.3 MB
ENCFF361POA.bam bam (unfiltered alignments) 566.4 MB
ENCFF390PNX.bed bed (conservative IDR thresholded peaks) 850.9 KB
ENCFF431NBI.bed bed (IDR ranked peaks) 9.8 MB
ENCFF435JRI.bigWig bigWig (fold change over control) 204.9 MB
ENCFF449IBC.bigWig bigWig (signal p-value) 778.8 MB
ENCFF470DSR.bigWig bigWig (fold change over control) 293.8 MB
ENCFF476ONS.bigWig bigWig (signal p-value) 457.7 MB
ENCFF508KLE.bigWig bigWig (fold change over control) 275.5 MB
ENCFF508TBN.bigWig bigWig (fold change over control) 207.1 MB
ENCFF525AZD.bigBed bigBed (peaks and background as input for IDR) 10.4 MB
ENCFF535XNA.bed bed (conservative IDR thresholded peaks) 850.8 KB
ENCFF540VCA.bigWig bigWig (fold change over control) 466.8 MB
ENCFF543ACC.bed bed (peaks and background as input for IDR) 5.9 MB
ENCFF554DMZ.bigBed bigBed (IDR thresholded peaks) 1.7 MB
ENCFF572QRZ.bed bed (IDR ranked peaks) 6.6 MB
ENCFF583CGC.bam bam (alignments) 382.0 MB
ENCFF651HVB.bigBed bigBed (peaks and background as input for IDR) 9.7 MB
ENCFF663YBI.bed bed (optimal IDR thresholded peaks) 863.8 KB
ENCFF704VGU.bam bam (unfiltered alignments) 550.3 MB
ENCFF719ZLM.bigBed bigBed (peaks and background as input for IDR) 10.1 MB
ENCFF720TPS.bam bam (unfiltered alignments) 555.2 MB
ENCFF733YBM.fastq fastq (reads) 478.4 MB
ENCFF739WOA.bam bam (alignments) 374.6 MB
ENCFF741YAI.bigWig bigWig (signal p-value) 415.2 MB
ENCFF743KRF.bed bed (peaks and background as input for IDR) 5.5 MB
ENCFF744YFO.bed bed (peaks and background as input for IDR) 6.5 MB
ENCFF756RMH.bed bed (conservative IDR thresholded peaks) 853.9 KB
ENCFF791LAK.bigBed bigBed (conservative IDR thresholded peaks) 1.6 MB
ENCFF800WHN.bed bed (IDR ranked peaks) 9.8 MB
ENCFF807JYY.bam bam (alignments) 375.3 MB
ENCFF833VNB.bed bed (IDR thresholded peaks) 863.4 KB
ENCFF836XQE.bigBed bigBed (conservative IDR thresholded peaks) 1.6 MB
ENCFF871YRG.bed bed (optimal IDR thresholded peaks) 864.4 KB
ENCFF920RWB.bigBed bigBed (peaks and background as input for IDR) 10.3 MB
ENCFF921QAQ.bigWig bigWig (signal p-value) 464.1 MB
ENCFF939HTZ.bigBed bigBed (optimal IDR thresholded peaks) 1.7 MB
ENCFF960MBV.bigWig bigWig (fold change over control) 454.9 MB
ENCFF961GAA.bigWig bigWig (signal p-value) 682.9 MB
ENCFF986ZID.bam bam (alignments) 377.2 MB
ENCSR603REQ ENCSR · via encode_api

PCBP2 ChIP-seq in K562

Homo sapiens

65 data files
FileTypeSize
ENCFF016WHL.bed bed (peaks and background as input for IDR) 6.4 MB
ENCFF020EYY.bigWig bigWig (signal p-value) 486.1 MB
ENCFF052JGO.bed bed (IDR ranked peaks) 3.0 MB
ENCFF060ZSF.bigWig bigWig (signal p-value) 839.6 MB
ENCFF064TWD.bigWig bigWig (fold change over control) 726.5 MB
ENCFF098EOS.bam bam (alignments) 418.0 MB
ENCFF108SNZ.bam bam (alignments) 385.7 MB
ENCFF114VUJ.bigWig bigWig (fold change over control) 731.6 MB
ENCFF118JPH.fastq fastq (reads) 429.5 MB
ENCFF140KEX.bam bam (alignments) 386.1 MB
ENCFF162PTT.bed bed (IDR ranked peaks) 1.1 MB
ENCFF165DUD.bam bam (unfiltered alignments) 1.5 GB
ENCFF165SYN.bam bam (alignments) 432.6 MB
ENCFF175XYE.bigWig bigWig (fold change over control) 732.3 MB
ENCFF190FHT.bigWig bigWig (fold change over control) 328.4 MB
ENCFF193JXF.bigBed bigBed (peaks and background as input for IDR) 12.6 MB
ENCFF201PAF.bed bed (peaks and background as input for IDR) 5.1 MB
ENCFF241ICS.bed bed (IDR ranked peaks) 3.1 MB
ENCFF246QEB.bigWig bigWig (signal p-value) 494.9 MB
ENCFF250WGH.bed bed (peaks and background as input for IDR) 4.6 MB
ENCFF257JFV.bigBed bigBed (conservative IDR thresholded peaks) 109.1 KB
ENCFF299ETM.bigBed bigBed (IDR thresholded peaks) 129.5 KB
ENCFF308RAP.bigWig bigWig (fold change over control) 312.4 MB
ENCFF316TNC.bigWig bigWig (signal p-value) 476.9 MB
ENCFF342UCZ.bam bam (unfiltered alignments) 1.6 GB
ENCFF347OFI.bam bam (unfiltered alignments) 771.8 MB
ENCFF347WVZ.bigWig bigWig (signal p-value) 802.9 MB
ENCFF369IJD.bigBed bigBed (peaks and background as input for IDR) 12.8 MB
ENCFF406TAS.bam bam (unfiltered alignments) 1.6 GB
ENCFF436ZDM.bigWig bigWig (fold change over control) 473.8 MB
ENCFF438OBK.fastq fastq (reads) 599.0 MB
ENCFF439KLP.bed bed (peaks and background as input for IDR) 6.4 MB
ENCFF458JNU.bam bam (alignments) 417.6 MB
ENCFF467EXO.bed bed (peaks and background as input for IDR) 5.0 MB
ENCFF499CMT.bigWig bigWig (signal p-value) 753.3 MB
ENCFF503VBD.bed bed (IDR thresholded peaks) 16.6 KB
ENCFF520LYV.bigBed bigBed (conservative IDR thresholded peaks) 111.1 KB
ENCFF554MYS.bed bed (peaks and background as input for IDR) 5.2 MB
ENCFF567SMD.bigWig bigWig (fold change over control) 325.1 MB
ENCFF573DIV.bigBed bigBed (peaks and background as input for IDR) 12.8 MB
ENCFF589RRD.bed bed (IDR ranked peaks) 1.1 MB
ENCFF599BTP.bed bed (IDR thresholded peaks) 11.0 KB
ENCFF599TBQ.bigWig bigWig (signal p-value) 505.0 MB
ENCFF612KRU.bigBed bigBed (optimal IDR thresholded peaks) 128.0 KB
ENCFF617EDT.bigWig bigWig (fold change over control) 424.2 MB
ENCFF650AZW.bam bam (unfiltered alignments) 781.4 MB
ENCFF655DJE.bigWig bigWig (signal p-value) 800.6 MB
ENCFF732IRT.bed bed (IDR thresholded peaks) 47.2 KB
ENCFF739EZC.bigBed bigBed (optimal IDR thresholded peaks) 133.7 KB
ENCFF775MCF.bigWig bigWig (signal p-value) 706.5 MB
ENCFF797TIR.bam bam (alignments) 401.0 MB
ENCFF811WMX.bed bed (conservative IDR thresholded peaks) 36.8 KB
ENCFF815ESE.bigWig bigWig (fold change over control) 295.8 MB
ENCFF851MOQ.bed bed (conservative IDR thresholded peaks) 34.3 KB
ENCFF856DXD.bigBed bigBed (peaks and background as input for IDR) 12.7 MB
ENCFF860VMS.bigBed bigBed (IDR thresholded peaks) 70.0 KB
ENCFF862PIF.bigBed bigBed (peaks and background as input for IDR) 12.5 MB
ENCFF881XQF.bed bed (optimal IDR thresholded peaks) 46.3 KB
ENCFF910JIA.bigBed bigBed (conservative IDR thresholded peaks) 114.5 KB
ENCFF920GPR.bigBed bigBed (peaks and background as input for IDR) 12.6 MB
ENCFF926CUN.fastq fastq (reads) 1.3 GB
ENCFF941XZW.bed bed (optimal IDR thresholded peaks) 49.5 KB
ENCFF946HSG.bam bam (unfiltered alignments) 778.2 MB
ENCFF970WJK.bed bed (conservative IDR thresholded peaks) 33.7 KB
ENCFF998SZA.bigBed bigBed (IDR thresholded peaks) 68.6 KB
ENCSR222MYK ENCSR · via encode_api

SRSF7 ChIP-seq in K562

Homo sapiens

64 data files
FileTypeSize
ENCFF014HAG.bed bed (IDR ranked peaks) 1.7 MB
ENCFF014OQM.bed bed (IDR ranked peaks) 1.8 MB
ENCFF020OIR.bigWig bigWig (fold change over control) 278.3 MB
ENCFF029IKY.bigWig bigWig (signal p-value) 424.4 MB
ENCFF030QYO.bed bed (IDR thresholded peaks) 4.5 KB
ENCFF031UQD.bam bam (unfiltered alignments) 777.6 MB
ENCFF037TEH.bed bed (peaks and background as input for IDR) 4.5 MB
ENCFF041XBV.bigWig bigWig (signal p-value) 427.0 MB
ENCFF043DHK.bed bed (IDR ranked peaks) 517.9 KB
ENCFF056YCN.bed bed (IDR thresholded peaks) 543.0 B
ENCFF059WVE.bed bed (optimal IDR thresholded peaks) 3.7 KB
ENCFF071HOZ.bigWig bigWig (signal p-value) 844.4 MB
ENCFF087ZHG.bed bed (peaks and background as input for IDR) 4.5 MB
ENCFF101IEH.bigBed bigBed (optimal IDR thresholded peaks) 58.6 KB
ENCFF108VFC.bigBed bigBed (peaks and background as input for IDR) 10.5 MB
ENCFF111TXR.bigWig bigWig (fold change over control) 343.0 MB
ENCFF127HYV.fastq fastq (reads) 460.7 MB
ENCFF128NOD.bed bed (peaks and background as input for IDR) 5.7 MB
ENCFF129NIH.bigWig bigWig (fold change over control) 763.3 MB
ENCFF130UBB.bigWig bigWig (fold change over control) 730.7 MB
ENCFF139QHI.bam bam (unfiltered alignments) 765.2 MB
ENCFF161FHO.fastq fastq (reads) 550.7 MB
ENCFF168ZCS.bigBed bigBed (conservative IDR thresholded peaks) 86.2 KB
ENCFF189QPY.bigBed bigBed (conservative IDR thresholded peaks) 57.2 KB
ENCFF212ZOU.bed bed (IDR thresholded peaks) 1.4 KB
ENCFF217MBF.bed bed (conservative IDR thresholded peaks) 4.6 KB
ENCFF218FHN.bam bam (alignments) 398.8 MB
ENCFF239PLR.bigWig bigWig (fold change over control) 406.5 MB
ENCFF257RQC.bigWig bigWig (fold change over control) 476.2 MB
ENCFF287CQO.bigWig bigWig (fold change over control) 338.4 MB
ENCFF295KEI.bed bed (conservative IDR thresholded peaks) 3.2 KB
ENCFF318AVP.bigBed bigBed (peaks and background as input for IDR) 10.5 MB
ENCFF397XSH.bigWig bigWig (fold change over control) 291.5 MB
ENCFF401QBU.bam bam (unfiltered alignments) 630.5 MB
ENCFF429IRH.bigBed bigBed (peaks and background as input for IDR) 10.9 MB
ENCFF440PPR.bam bam (alignments) 515.0 MB
ENCFF464HMJ.bed bed (peaks and background as input for IDR) 4.5 MB
ENCFF550VUN.bed bed (optimal IDR thresholded peaks) 5.0 KB
ENCFF555GJI.bigBed bigBed (peaks and background as input for IDR) 10.9 MB
ENCFF560KJC.bigBed bigBed (optimal IDR thresholded peaks) 55.5 KB
ENCFF560UVY.bigBed bigBed (IDR thresholded peaks) 57.3 KB
ENCFF572MUD.bam bam (alignments) 382.4 MB
ENCFF584SCO.bed bed (peaks and background as input for IDR) 5.6 MB
ENCFF589TAO.bigWig bigWig (signal p-value) 453.8 MB
ENCFF589UQA.bigBed bigBed (peaks and background as input for IDR) 10.4 MB
ENCFF600TNX.bam bam (alignments) 515.5 MB
ENCFF615GWF.bed bed (peaks and background as input for IDR) 4.4 MB
ENCFF636MOG.bigWig bigWig (signal p-value) 776.9 MB
ENCFF651QWP.bigBed bigBed (IDR thresholded peaks) 16.6 KB
ENCFF705HIC.bam bam (unfiltered alignments) 622.5 MB
ENCFF708FFD.bam bam (alignments) 536.0 MB
ENCFF716DBD.bam bam (unfiltered alignments) 632.9 MB
ENCFF720XTH.bam bam (alignments) 382.9 MB
ENCFF751PWV.bigWig bigWig (signal p-value) 788.2 MB
ENCFF753NWI.bigWig bigWig (signal p-value) 729.0 MB
ENCFF771EYZ.bam bam (unfiltered alignments) 774.2 MB
ENCFF774NSL.bigWig bigWig (signal p-value) 855.9 MB
ENCFF786AEW.bigWig bigWig (fold change over control) 741.4 MB
ENCFF797YXH.bigBed bigBed (conservative IDR thresholded peaks) 77.0 KB
ENCFF866KWV.bigBed bigBed (peaks and background as input for IDR) 10.4 MB
ENCFF941LVZ.bigBed bigBed (IDR thresholded peaks) 21.5 KB
ENCFF964DJM.bigWig bigWig (signal p-value) 420.3 MB
ENCFF973ITD.bed bed (conservative IDR thresholded peaks) 3.6 KB
ENCFF977RBR.bed bed (IDR ranked peaks) 512.5 KB
ENCSR220YXI ENCSR · via encode_api

PRPF4 ChIP-seq in K562

Homo sapiens

70 data files
FileTypeSize
ENCFF035SWM.bigWig bigWig (fold change over control) 305.0 MB
ENCFF046WLD.bigBed bigBed (conservative IDR thresholded peaks) 317.6 KB
ENCFF058KNJ.bigWig bigWig (signal p-value) 844.0 MB
ENCFF072JIS.bam bam (unfiltered alignments) 450.1 MB
ENCFF103MEZ.bam bam (alignments) 371.8 MB
ENCFF106XAK.bigWig bigWig (fold change over control) 625.3 MB
ENCFF187QGT.bigWig bigWig (fold change over control) 285.9 MB
ENCFF194LUL.bigBed bigBed (peaks and background as input for IDR) 12.5 MB
ENCFF202AJJ.bigBed bigBed (optimal IDR thresholded peaks) 311.1 KB
ENCFF261XHJ.bigBed bigBed (IDR thresholded peaks) 221.6 KB
ENCFF273SJD.bed bed (IDR ranked peaks) 1.5 MB
ENCFF308HCL.fastq fastq (reads) 2.7 GB
ENCFF309AFO.bam bam (alignments) 195.7 MB
ENCFF310EMX.bed bed (peaks and background as input for IDR) 6.8 MB
ENCFF313SOS.bigWig bigWig (signal p-value) 835.2 MB
ENCFF331BDZ.fastq fastq (reads) 366.4 MB
ENCFF352PPM.bam bam (alignments) 195.4 MB
ENCFF367OYT.bam bam (alignments) 327.4 MB
ENCFF406DQD.bed bed (peaks and background as input for IDR) 5.5 MB
ENCFF417RQZ.bed bed (optimal IDR thresholded peaks) 121.8 KB
ENCFF450JYN.bigWig bigWig (fold change over control) 411.2 MB
ENCFF472ISV.bigWig bigWig (fold change over control) 644.6 MB
ENCFF486FVK.fastq fastq (reads) 2.4 GB
ENCFF520LVQ.bed bed (peaks and background as input for IDR) 5.4 MB
ENCFF585GPW.bam bam (alignments) 385.7 MB
ENCFF585IBD.bam bam (alignments) 340.3 MB
ENCFF588AWO.bigWig bigWig (signal p-value) 850.0 MB
ENCFF588RFX.bigBed bigBed (IDR thresholded peaks) 305.1 KB
ENCFF591WWL.bigWig bigWig (signal p-value) 443.0 MB
ENCFF594PWI.bed bed (IDR thresholded peaks) 75.6 KB
ENCFF596NRP.bam bam (unfiltered alignments) 2.7 GB
ENCFF619FVA.bigBed bigBed (conservative IDR thresholded peaks) 310.8 KB
ENCFF630RXB.bam bam (unfiltered alignments) 2.7 GB
ENCFF648YCS.bed bed (conservative IDR thresholded peaks) 121.2 KB
ENCFF654BRU.bam bam (unfiltered alignments) 2.7 GB
ENCFF684SIQ.bigWig bigWig (fold change over control) 305.8 MB
ENCFF691CZV.bam bam (unfiltered alignments) 2.4 GB
ENCFF692UVD.bed bed (peaks and background as input for IDR) 5.5 MB
ENCFF699GMR.bigWig bigWig (signal p-value) 429.3 MB
ENCFF705IRU.bigWig bigWig (fold change over control) 646.6 MB
ENCFF709DMO.bed bed (IDR thresholded peaks) 119.0 KB
ENCFF724KTU.bigWig bigWig (signal p-value) 720.1 MB
ENCFF729VEX.bigWig bigWig (fold change over control) 369.7 MB
ENCFF733JWK.bigWig bigWig (signal p-value) 795.4 MB
ENCFF743VWB.bam bam (unfiltered alignments) 2.4 GB
ENCFF749IGW.bigBed bigBed (IDR thresholded peaks) 178.2 KB
ENCFF751GIZ.bed bed (IDR thresholded peaks) 51.8 KB
ENCFF756RFF.bigBed bigBed (peaks and background as input for IDR) 12.4 MB
ENCFF783OQY.bed bed (IDR ranked peaks) 4.5 MB
ENCFF785ACI.bed bed (optimal IDR thresholded peaks) 117.0 KB
ENCFF787SYP.bam bam (alignments) 184.7 MB
ENCFF817OVD.bed bed (peaks and background as input for IDR) 6.8 MB
ENCFF830DKY.bigBed bigBed (peaks and background as input for IDR) 12.5 MB
ENCFF835LTJ.bigWig bigWig (signal p-value) 428.2 MB
ENCFF869HMG.bam bam (unfiltered alignments) 481.5 MB
ENCFF872PFO.bigBed bigBed (peaks and background as input for IDR) 12.5 MB
ENCFF875DDX.bed bed (IDR ranked peaks) 1.6 MB
ENCFF876REW.bam bam (unfiltered alignments) 2.4 GB
ENCFF886UMM.bed bed (conservative IDR thresholded peaks) 126.5 KB
ENCFF889DCH.bam bam (alignments) 327.9 MB
ENCFF894WLR.bed bed (peaks and background as input for IDR) 5.6 MB
ENCFF895DLK.bam bam (alignments) 371.3 MB
ENCFF902BIO.bigBed bigBed (optimal IDR thresholded peaks) 302.5 KB
ENCFF905KPT.bigBed bigBed (peaks and background as input for IDR) 12.5 MB
ENCFF915JHD.bed bed (IDR ranked peaks) 4.1 MB
ENCFF922FDO.bam bam (alignments) 184.4 MB
ENCFF959ALN.bigBed bigBed (peaks and background as input for IDR) 12.4 MB
ENCFF966OSI.bigWig bigWig (signal p-value) 541.6 MB
ENCFF984DIG.fastq fastq (reads) 394.3 MB
ENCFF988DTQ.bigWig bigWig (fold change over control) 285.0 MB
ENCSR072VUO ENCSR · via encode_api

SAFB ChIP-seq in K562

Homo sapiens

64 data files
FileTypeSize
ENCFF032QDH.bigBed bigBed (peaks and background as input for IDR) 10.6 MB
ENCFF042GZI.bed bed (IDR ranked peaks) 2.4 MB
ENCFF063ZIT.bed bed (conservative IDR thresholded peaks) 69.2 KB
ENCFF088FWS.bigWig bigWig (signal p-value) 906.6 MB
ENCFF112WOA.bam bam (unfiltered alignments) 732.3 MB
ENCFF135WKL.fastq fastq (reads) 584.8 MB
ENCFF157CME.bed bed (peaks and background as input for IDR) 4.9 MB
ENCFF163TQK.bigWig bigWig (fold change over control) 823.4 MB
ENCFF164HNV.bam bam (unfiltered alignments) 730.3 MB
ENCFF189QCJ.bed bed (conservative IDR thresholded peaks) 70.0 KB
ENCFF202SBS.bed bed (IDR ranked peaks) 1.5 MB
ENCFF215LQF.bigWig bigWig (fold change over control) 847.7 MB
ENCFF228GOX.fastq fastq (reads) 524.7 MB
ENCFF256POS.bigBed bigBed (IDR thresholded peaks) 121.0 KB
ENCFF260ZZE.bed bed (IDR ranked peaks) 1.8 MB
ENCFF284KYS.bed bed (IDR thresholded peaks) 39.6 KB
ENCFF297NXF.bed bed (peaks and background as input for IDR) 4.9 MB
ENCFF302KAH.bigBed bigBed (IDR thresholded peaks) 220.0 KB
ENCFF308BWW.bigWig bigWig (fold change over control) 375.0 MB
ENCFF328WUR.bed bed (peaks and background as input for IDR) 4.8 MB
ENCFF334JVX.bam bam (unfiltered alignments) 798.4 MB
ENCFF361RLX.bigBed bigBed (peaks and background as input for IDR) 10.6 MB
ENCFF377YBU.bam bam (alignments) 555.2 MB
ENCFF411YVY.bed bed (optimal IDR thresholded peaks) 101.1 KB
ENCFF415VFS.bed bed (peaks and background as input for IDR) 4.8 MB
ENCFF425SPA.bigBed bigBed (conservative IDR thresholded peaks) 167.8 KB
ENCFF428NSD.bed bed (peaks and background as input for IDR) 6.0 MB
ENCFF433PJA.bigWig bigWig (signal p-value) 571.6 MB
ENCFF444EXX.bigBed bigBed (optimal IDR thresholded peaks) 252.6 KB
ENCFF454SGO.bigBed bigBed (peaks and background as input for IDR) 13.0 MB
ENCFF468BOJ.bigWig bigWig (signal p-value) 550.1 MB
ENCFF478MPX.bed bed (optimal IDR thresholded peaks) 101.0 KB
ENCFF508UZH.bam bam (unfiltered alignments) 810.7 MB
ENCFF537RNU.bed bed (IDR thresholded peaks) 102.6 KB
ENCFF564MXL.bam bam (unfiltered alignments) 807.6 MB
ENCFF592JAD.bigBed bigBed (peaks and background as input for IDR) 10.6 MB
ENCFF599ZUM.bigWig bigWig (signal p-value) 987.6 MB
ENCFF614EIC.bigBed bigBed (peaks and background as input for IDR) 10.6 MB
ENCFF635MIW.bed bed (IDR thresholded peaks) 83.6 KB
ENCFF677EHH.bed bed (peaks and background as input for IDR) 6.0 MB
ENCFF697GOT.bigWig bigWig (fold change over control) 356.5 MB
ENCFF711WLJ.bigWig bigWig (fold change over control) 823.0 MB
ENCFF737CHN.bam bam (unfiltered alignments) 717.5 MB
ENCFF739APB.bigWig bigWig (signal p-value) 496.4 MB
ENCFF742EUP.bigWig bigWig (fold change over control) 509.3 MB
ENCFF751EVN.bam bam (alignments) 477.6 MB
ENCFF752EXU.bigWig bigWig (fold change over control) 375.8 MB
ENCFF758DRJ.bigWig bigWig (signal p-value) 758.6 MB
ENCFF765XSF.bigBed bigBed (IDR thresholded peaks) 254.3 KB
ENCFF767JNB.bigBed bigBed (conservative IDR thresholded peaks) 167.4 KB
ENCFF769YOO.bigWig bigWig (fold change over control) 544.2 MB
ENCFF792LFJ.bigBed bigBed (conservative IDR thresholded peaks) 167.1 KB
ENCFF793KTT.bed bed (IDR ranked peaks) 1.1 MB
ENCFF840ICU.bigWig bigWig (signal p-value) 565.0 MB
ENCFF867CUF.bigWig bigWig (fold change over control) 357.4 MB
ENCFF908KFH.bam bam (alignments) 555.8 MB
ENCFF916WYW.bigBed bigBed (optimal IDR thresholded peaks) 253.2 KB
ENCFF925YOK.bigWig bigWig (signal p-value) 870.2 MB
ENCFF937ONB.bam bam (alignments) 478.3 MB
ENCFF952MFS.bigBed bigBed (peaks and background as input for IDR) 13.0 MB
ENCFF960ZBN.bigWig bigWig (signal p-value) 946.4 MB
ENCFF969HXX.bed bed (conservative IDR thresholded peaks) 70.1 KB
ENCFF976LCQ.bam bam (alignments) 574.2 MB
ENCFF979DVB.bam bam (alignments) 502.1 MB
ENCSR868JLS ENCSR · via encode_api

U2AF1 ChIP-seq in HepG2

Homo sapiens

64 data files
FileTypeSize
ENCFF034KUO.bed bed (optimal IDR thresholded peaks) 115.3 KB
ENCFF045AXJ.bam bam (unfiltered alignments) 1.0 GB
ENCFF050SKN.bigWig bigWig (fold change over control) 321.0 MB
ENCFF055MVR.bed bed (optimal IDR thresholded peaks) 105.5 KB
ENCFF056YOB.bed bed (IDR ranked peaks) 4.8 MB
ENCFF057MJF.bed bed (conservative IDR thresholded peaks) 104.8 KB
ENCFF071QZJ.bed bed (IDR ranked peaks) 5.4 MB
ENCFF077FVH.bam bam (unfiltered alignments) 891.2 MB
ENCFF143SCA.bigWig bigWig (signal p-value) 779.7 MB
ENCFF165QYR.bigWig bigWig (fold change over control) 341.8 MB
ENCFF177JNT.bigWig bigWig (fold change over control) 336.5 MB
ENCFF183NCZ.bed bed (IDR thresholded peaks) 101.6 KB
ENCFF190TFD.bigBed bigBed (conservative IDR thresholded peaks) 252.0 KB
ENCFF195PUP.bigWig bigWig (signal p-value) 779.1 MB
ENCFF205VRL.bigWig bigWig (fold change over control) 345.5 MB
ENCFF210EIU.fastq fastq (reads) 671.4 MB
ENCFF212BKY.bigWig bigWig (fold change over control) 497.9 MB
ENCFF242XQC.bigWig bigWig (fold change over control) 779.3 MB
ENCFF311ZPR.bigWig bigWig (fold change over control) 801.1 MB
ENCFF329EIJ.bigWig bigWig (signal p-value) 517.3 MB
ENCFF340KKU.bigWig bigWig (signal p-value) 680.2 MB
ENCFF340XFF.bigBed bigBed (IDR thresholded peaks) 163.4 KB
ENCFF366QWO.bed bed (IDR thresholded peaks) 61.1 KB
ENCFF375YPL.bigWig bigWig (fold change over control) 462.3 MB
ENCFF396MRU.bigBed bigBed (conservative IDR thresholded peaks) 238.3 KB
ENCFF429PCJ.bed bed (peaks and background as input for IDR) 5.8 MB
ENCFF459BPD.bed bed (peaks and background as input for IDR) 5.8 MB
ENCFF466HRK.bed bed (peaks and background as input for IDR) 5.6 MB
ENCFF491RBM.bam bam (alignments) 508.4 MB
ENCFF520GWA.bed bed (IDR ranked peaks) 5.4 MB
ENCFF546DJZ.bam bam (unfiltered alignments) 909.7 MB
ENCFF548XGJ.bigBed bigBed (optimal IDR thresholded peaks) 289.3 KB
ENCFF550BKL.bam bam (alignments) 598.6 MB
ENCFF586AFS.fastq fastq (reads) 785.0 MB
ENCFF588HJQ.bed bed (IDR thresholded peaks) 25.0 KB
ENCFF615FNO.bam bam (unfiltered alignments) 1.0 GB
ENCFF616DBT.bed bed (IDR ranked peaks) 3.2 MB
ENCFF621SFJ.bam bam (unfiltered alignments) 906.5 MB
ENCFF625IZR.bigBed bigBed (peaks and background as input for IDR) 12.4 MB
ENCFF630NXC.bigWig bigWig (signal p-value) 887.8 MB
ENCFF662SGF.bam bam (alignments) 534.3 MB
ENCFF678KJQ.bam bam (unfiltered alignments) 1.0 GB
ENCFF696MJA.bigWig bigWig (signal p-value) 434.7 MB
ENCFF701EPB.bigBed bigBed (peaks and background as input for IDR) 12.2 MB
ENCFF705LOO.bigBed bigBed (optimal IDR thresholded peaks) 271.1 KB
ENCFF722NWU.bigWig bigWig (signal p-value) 726.3 MB
ENCFF724AXN.bigBed bigBed (IDR thresholded peaks) 264.3 KB
ENCFF730XII.bigBed bigBed (peaks and background as input for IDR) 12.3 MB
ENCFF740GLK.bam bam (alignments) 597.9 MB
ENCFF749HXW.bed bed (conservative IDR thresholded peaks) 87.3 KB
ENCFF758IXU.bigBed bigBed (conservative IDR thresholded peaks) 269.5 KB
ENCFF773TNP.bigWig bigWig (fold change over control) 778.0 MB
ENCFF794ONM.bigWig bigWig (signal p-value) 444.9 MB
ENCFF825GMZ.bigBed bigBed (peaks and background as input for IDR) 12.4 MB
ENCFF830FZB.bigBed bigBed (IDR thresholded peaks) 104.4 KB
ENCFF845LTZ.bigBed bigBed (peaks and background as input for IDR) 12.2 MB
ENCFF880BHR.bed bed (peaks and background as input for IDR) 5.5 MB
ENCFF881XYD.bam bam (alignments) 507.7 MB
ENCFF886AIM.bed bed (conservative IDR thresholded peaks) 94.0 KB
ENCFF914GJU.bam bam (alignments) 630.8 MB
ENCFF921HUN.bigWig bigWig (signal p-value) 499.3 MB
ENCFF931FHX.bigBed bigBed (peaks and background as input for IDR) 12.3 MB
ENCFF942SJF.bed bed (peaks and background as input for IDR) 6.7 MB
ENCFF947PDR.bed bed (peaks and background as input for IDR) 6.7 MB
ENCSR382PVA ENCSR · via encode_api

GTF2F1 ChIP-seq in HepG2

Homo sapiens

64 data files
FileTypeSize
ENCFF006EWE.bed bed (IDR ranked peaks) 3.8 MB
ENCFF019ZST.bigBed bigBed (IDR thresholded peaks) 113.0 KB
ENCFF022DFQ.bam bam (unfiltered alignments) 750.5 MB
ENCFF033HQM.bigBed bigBed (IDR thresholded peaks) 233.5 KB
ENCFF033KIA.bed bed (peaks and background as input for IDR) 6.2 MB
ENCFF053FAE.bam bam (unfiltered alignments) 739.5 MB
ENCFF065JBC.bam bam (alignments) 413.4 MB
ENCFF069LKD.bigBed bigBed (peaks and background as input for IDR) 12.5 MB
ENCFF092HMG.bed bed (peaks and background as input for IDR) 5.0 MB
ENCFF095TYO.bed bed (optimal IDR thresholded peaks) 107.6 KB
ENCFF122RRV.bigWig bigWig (signal p-value) 889.6 MB
ENCFF128DCK.bam bam (alignments) 485.4 MB
ENCFF146GKO.bigWig bigWig (signal p-value) 643.0 MB
ENCFF168XVH.bigWig bigWig (fold change over control) 457.2 MB
ENCFF171VVS.bed bed (conservative IDR thresholded peaks) 100.7 KB
ENCFF187SKG.bigWig bigWig (signal p-value) 463.4 MB
ENCFF188YUB.bigWig bigWig (signal p-value) 384.1 MB
ENCFF199NEL.bam bam (alignments) 412.8 MB
ENCFF215OIS.fastq fastq (reads) 565.1 MB
ENCFF219UKS.bam bam (unfiltered alignments) 881.7 MB
ENCFF224MFN.bed bed (conservative IDR thresholded peaks) 99.4 KB
ENCFF266MOP.bed bed (peaks and background as input for IDR) 4.9 MB
ENCFF287HTO.bam bam (unfiltered alignments) 901.1 MB
ENCFF330RTC.bigBed bigBed (conservative IDR thresholded peaks) 244.7 KB
ENCFF332PST.bigWig bigWig (fold change over control) 373.7 MB
ENCFF349ZCH.bam bam (unfiltered alignments) 895.6 MB
ENCFF361ZLP.bed bed (IDR thresholded peaks) 100.3 KB
ENCFF362KTZ.bigWig bigWig (signal p-value) 513.5 MB
ENCFF366ELK.bed bed (peaks and background as input for IDR) 5.0 MB
ENCFF378VHQ.bam bam (unfiltered alignments) 754.4 MB
ENCFF413SCT.bigWig bigWig (fold change over control) 321.0 MB
ENCFF414RTP.bigBed bigBed (peaks and background as input for IDR) 12.7 MB
ENCFF418SGE.bam bam (alignments) 484.7 MB
ENCFF433IKN.bigWig bigWig (signal p-value) 721.7 MB
ENCFF433KGK.bed bed (conservative IDR thresholded peaks) 107.3 KB
ENCFF436FGZ.bigBed bigBed (peaks and background as input for IDR) 12.7 MB
ENCFF450JNX.bigBed bigBed (peaks and background as input for IDR) 12.3 MB
ENCFF456BDR.bigBed bigBed (peaks and background as input for IDR) 12.5 MB
ENCFF538ADD.bed bed (IDR ranked peaks) 1.7 MB
ENCFF559WUR.bigBed bigBed (IDR thresholded peaks) 108.8 KB
ENCFF573BUV.bigBed bigBed (peaks and background as input for IDR) 12.3 MB
ENCFF597MAC.bigBed bigBed (optimal IDR thresholded peaks) 244.9 KB
ENCFF599TWF.bed bed (optimal IDR thresholded peaks) 117.1 KB
ENCFF617WKV.bed bed (peaks and background as input for IDR) 4.8 MB
ENCFF633ADO.bigWig bigWig (signal p-value) 521.7 MB
ENCFF656MNI.bigBed bigBed (optimal IDR thresholded peaks) 307.0 KB
ENCFF659IUJ.bigWig bigWig (fold change over control) 319.9 MB
ENCFF660LGC.bed bed (peaks and background as input for IDR) 6.2 MB
ENCFF688SFG.bigWig bigWig (fold change over control) 251.9 MB
ENCFF746CQZ.bed bed (IDR thresholded peaks) 35.2 KB
ENCFF753WWT.bed bed (IDR ranked peaks) 3.7 MB
ENCFF765AEA.bed bed (IDR ranked peaks) 1.9 MB
ENCFF766LRM.bigWig bigWig (fold change over control) 261.7 MB
ENCFF808HTG.bed bed (IDR thresholded peaks) 38.2 KB
ENCFF811WLG.bigWig bigWig (signal p-value) 807.3 MB
ENCFF816NNH.fastq fastq (reads) 675.2 MB
ENCFF890BML.bigWig bigWig (fold change over control) 690.3 MB
ENCFF892VRK.bigWig bigWig (fold change over control) 678.0 MB
ENCFF918PMU.bigBed bigBed (conservative IDR thresholded peaks) 234.1 KB
ENCFF947XYO.bam bam (alignments) 439.8 MB
ENCFF951RFH.bam bam (alignments) 517.5 MB
ENCFF967OKU.bigWig bigWig (fold change over control) 684.2 MB
ENCFF974XMU.bigBed bigBed (conservative IDR thresholded peaks) 232.2 KB
ENCFF983SCG.bigWig bigWig (signal p-value) 736.7 MB
ENCSR754ZHU ENCSR · via encode_api

SNRNP70 ChIP-seq in K562

Homo sapiens

64 data files
FileTypeSize
ENCFF012DPW.bed bed (conservative IDR thresholded peaks) 14.6 KB
ENCFF033KXY.bed bed (optimal IDR thresholded peaks) 17.2 KB
ENCFF044JID.bigWig bigWig (fold change over control) 332.1 MB
ENCFF105WKL.bigWig bigWig (signal p-value) 863.7 MB
ENCFF110EDY.fastq fastq (reads) 644.5 MB
ENCFF152KZE.bigBed bigBed (peaks and background as input for IDR) 10.3 MB
ENCFF157WFG.bam bam (alignments) 566.4 MB
ENCFF166CCA.bigBed bigBed (peaks and background as input for IDR) 10.3 MB
ENCFF190QFS.bigBed bigBed (conservative IDR thresholded peaks) 103.7 KB
ENCFF206MJS.bed bed (optimal IDR thresholded peaks) 15.2 KB
ENCFF206MLH.bigBed bigBed (optimal IDR thresholded peaks) 108.3 KB
ENCFF228XZD.bigBed bigBed (IDR thresholded peaks) 86.6 KB
ENCFF260IOV.bed bed (conservative IDR thresholded peaks) 15.6 KB
ENCFF299PKB.bed bed (IDR ranked peaks) 2.9 MB
ENCFF306TAD.bed bed (conservative IDR thresholded peaks) 15.7 KB
ENCFF317XGT.bam bam (unfiltered alignments) 949.9 MB
ENCFF352GQK.bigBed bigBed (peaks and background as input for IDR) 10.3 MB
ENCFF362RUB.bigWig bigWig (signal p-value) 389.9 MB
ENCFF363KCU.bed bed (peaks and background as input for IDR) 4.5 MB
ENCFF372NDR.bam bam (alignments) 604.6 MB
ENCFF384YAO.bigWig bigWig (signal p-value) 688.5 MB
ENCFF403WEJ.bam bam (unfiltered alignments) 897.0 MB
ENCFF404SDU.bigWig bigWig (fold change over control) 345.7 MB
ENCFF420FOF.bam bam (unfiltered alignments) 933.1 MB
ENCFF438HVZ.bam bam (unfiltered alignments) 952.7 MB
ENCFF447IRW.bed bed (IDR thresholded peaks) 7.8 KB
ENCFF452GBY.bed bed (IDR thresholded peaks) 7.1 KB
ENCFF466MIW.fastq fastq (reads) 682.0 MB
ENCFF470XDL.bigBed bigBed (optimal IDR thresholded peaks) 104.9 KB
ENCFF507MYK.bam bam (alignments) 599.7 MB
ENCFF546AFS.bam bam (alignments) 605.2 MB
ENCFF551QCK.bam bam (alignments) 567.1 MB
ENCFF557SXK.bigWig bigWig (fold change over control) 779.6 MB
ENCFF570NLH.bam bam (alignments) 638.9 MB
ENCFF586LJA.bed bed (peaks and background as input for IDR) 4.5 MB
ENCFF591EEZ.bigBed bigBed (conservative IDR thresholded peaks) 102.6 KB
ENCFF611MZX.bigWig bigWig (signal p-value) 766.9 MB
ENCFF622THV.bed bed (peaks and background as input for IDR) 4.6 MB
ENCFF626AAZ.bed bed (peaks and background as input for IDR) 6.0 MB
ENCFF641GWB.bigBed bigBed (IDR thresholded peaks) 104.9 KB
ENCFF647LCC.bigWig bigWig (signal p-value) 397.2 MB
ENCFF649AIW.bam bam (unfiltered alignments) 880.8 MB
ENCFF704ZRB.bigBed bigBed (peaks and background as input for IDR) 12.7 MB
ENCFF716CUK.bigBed bigBed (conservative IDR thresholded peaks) 105.2 KB
ENCFF725OUP.bigBed bigBed (peaks and background as input for IDR) 12.7 MB
ENCFF744FLC.bed bed (IDR thresholded peaks) 15.7 KB
ENCFF769MWV.bed bed (peaks and background as input for IDR) 4.5 MB
ENCFF774YIJ.bigWig bigWig (signal p-value) 821.4 MB
ENCFF786WEP.bigWig bigWig (signal p-value) 408.9 MB
ENCFF800WMI.bed bed (peaks and background as input for IDR) 5.9 MB
ENCFF833FDT.bigWig bigWig (signal p-value) 490.4 MB
ENCFF896TLD.bigBed bigBed (peaks and background as input for IDR) 10.3 MB
ENCFF905UZN.bigBed bigBed (IDR thresholded peaks) 84.8 KB
ENCFF911XTN.bigWig bigWig (fold change over control) 498.5 MB
ENCFF917XAY.bam bam (unfiltered alignments) 899.4 MB
ENCFF937ZFO.bigWig bigWig (fold change over control) 465.0 MB
ENCFF940AKZ.bed bed (IDR ranked peaks) 2.9 MB
ENCFF943AAW.bed bed (IDR ranked peaks) 1.5 MB
ENCFF949ZNG.bigWig bigWig (signal p-value) 706.9 MB
ENCFF962VDO.bed bed (IDR ranked peaks) 1.6 MB
ENCFF962YWD.bigWig bigWig (fold change over control) 743.4 MB
ENCFF978NDZ.bigWig bigWig (fold change over control) 344.9 MB
ENCFF989OXX.bigWig bigWig (fold change over control) 761.4 MB
ENCFF996CLC.bigWig bigWig (fold change over control) 334.0 MB
ENCSR804HMZ ENCSR · via encode_api

HNRNPLL ChIP-seq in HepG2

Homo sapiens

64 data files
FileTypeSize
ENCFF020IGC.bigWig bigWig (fold change over control) 424.9 MB
ENCFF020PYP.bigWig bigWig (fold change over control) 683.9 MB
ENCFF026ZCX.bed bed (conservative IDR thresholded peaks) 446.1 KB
ENCFF028NSO.bed bed (IDR ranked peaks) 3.1 MB
ENCFF035RUB.bigWig bigWig (signal p-value) 783.5 MB
ENCFF043DRX.bed bed (peaks and background as input for IDR) 5.4 MB
ENCFF043PMJ.bigWig bigWig (signal p-value) 934.7 MB
ENCFF043QFM.bed bed (peaks and background as input for IDR) 6.4 MB
ENCFF061IBN.bed bed (IDR ranked peaks) 2.9 MB
ENCFF093CYZ.bigWig bigWig (fold change over control) 287.5 MB
ENCFF101MNR.bigWig bigWig (signal p-value) 909.3 MB
ENCFF155CTJ.bigWig bigWig (signal p-value) 431.4 MB
ENCFF185QJQ.bed bed (IDR ranked peaks) 5.3 MB
ENCFF187VTL.bam bam (unfiltered alignments) 1.8 GB
ENCFF236DXP.bigWig bigWig (fold change over control) 676.9 MB
ENCFF241BXH.bigBed bigBed (conservative IDR thresholded peaks) 876.4 KB
ENCFF252CYF.bed bed (peaks and background as input for IDR) 5.3 MB
ENCFF265HES.bam bam (unfiltered alignments) 1.2 GB
ENCFF273BMN.bam bam (unfiltered alignments) 1.2 GB
ENCFF292OSF.fastq fastq (reads) 1.7 GB
ENCFF321VUE.fastq fastq (reads) 1.1 GB
ENCFF322ION.bigWig bigWig (signal p-value) 684.6 MB
ENCFF330AWY.bam bam (alignments) 397.5 MB
ENCFF355PIC.bigBed bigBed (IDR thresholded peaks) 1.1 MB
ENCFF387YNH.bigWig bigWig (signal p-value) 433.0 MB
ENCFF401IWU.bigWig bigWig (fold change over control) 288.9 MB
ENCFF427GLC.bam bam (alignments) 393.2 MB
ENCFF441TYX.bigWig bigWig (fold change over control) 298.2 MB
ENCFF452XHA.bigBed bigBed (IDR thresholded peaks) 666.4 KB
ENCFF463QUS.bed bed (IDR thresholded peaks) 459.5 KB
ENCFF463UUZ.bam bam (alignments) 407.7 MB
ENCFF482ZCR.bed bed (peaks and background as input for IDR) 5.4 MB
ENCFF483RRM.bed bed (peaks and background as input for IDR) 6.4 MB
ENCFF487NEW.bed bed (IDR thresholded peaks) 284.4 KB
ENCFF488SGU.bigBed bigBed (conservative IDR thresholded peaks) 871.0 KB
ENCFF491WYJ.bigBed bigBed (peaks and background as input for IDR) 12.3 MB
ENCFF498ADL.bigWig bigWig (signal p-value) 798.1 MB
ENCFF505FAJ.bigBed bigBed (peaks and background as input for IDR) 12.4 MB
ENCFF563BOF.bam bam (unfiltered alignments) 1.8 GB
ENCFF588RGM.bigWig bigWig (fold change over control) 404.9 MB
ENCFF592QMX.bigWig bigWig (fold change over control) 690.2 MB
ENCFF619VKF.bed bed (peaks and background as input for IDR) 5.3 MB
ENCFF661CTX.bam bam (alignments) 380.4 MB
ENCFF769LFO.bigWig bigWig (signal p-value) 397.3 MB
ENCFF773IOA.bigBed bigBed (IDR thresholded peaks) 637.0 KB
ENCFF773YJP.bed bed (IDR ranked peaks) 5.3 MB
ENCFF778VAW.bigWig bigWig (signal p-value) 458.4 MB
ENCFF787FUW.bam bam (alignments) 392.6 MB
ENCFF842MNK.bigBed bigBed (peaks and background as input for IDR) 12.3 MB
ENCFF863GUM.bigBed bigBed (peaks and background as input for IDR) 12.5 MB
ENCFF873JXV.bigBed bigBed (conservative IDR thresholded peaks) 873.7 KB
ENCFF883CDF.bed bed (optimal IDR thresholded peaks) 461.6 KB
ENCFF886DRH.bed bed (conservative IDR thresholded peaks) 449.0 KB
ENCFF890KTX.bed bed (optimal IDR thresholded peaks) 466.3 KB
ENCFF897BJD.bam bam (unfiltered alignments) 1.8 GB
ENCFF906QNP.bigBed bigBed (peaks and background as input for IDR) 12.4 MB
ENCFF910TET.bigBed bigBed (optimal IDR thresholded peaks) 1.1 MB
ENCFF922AYX.bigBed bigBed (peaks and background as input for IDR) 12.5 MB
ENCFF925TIA.bed bed (conservative IDR thresholded peaks) 447.2 KB
ENCFF943MHS.bam bam (unfiltered alignments) 1.2 GB
ENCFF952XAB.bigBed bigBed (optimal IDR thresholded peaks) 1.1 MB
ENCFF992NGF.bed bed (IDR thresholded peaks) 310.7 KB
ENCFF994DCW.bigWig bigWig (fold change over control) 292.6 MB
ENCFF995FJU.bam bam (alignments) 381.0 MB
ENCSR423FCW ENCSR · via encode_api

RBM14 ChIP-seq in K562

Homo sapiens

64 data files
FileTypeSize
ENCFF075HGP.bigBed bigBed (conservative IDR thresholded peaks) 131.5 KB
ENCFF081RGA.bigWig bigWig (fold change over control) 212.8 MB
ENCFF082WQA.bam bam (unfiltered alignments) 547.8 MB
ENCFF092DLN.bed bed (IDR thresholded peaks) 51.8 KB
ENCFF104NGZ.bigWig bigWig (signal p-value) 675.4 MB
ENCFF110MJO.bigWig bigWig (signal p-value) 891.9 MB
ENCFF113VET.bigBed bigBed (peaks and background as input for IDR) 8.7 MB
ENCFF117LLI.bigBed bigBed (optimal IDR thresholded peaks) 144.0 KB
ENCFF118FCO.bigBed bigBed (IDR thresholded peaks) 150.0 KB
ENCFF122HCE.bed bed (peaks and background as input for IDR) 3.8 MB
ENCFF133DUX.bigWig bigWig (fold change over control) 278.2 MB
ENCFF207MZH.bigBed bigBed (conservative IDR thresholded peaks) 107.4 KB
ENCFF215APQ.bigWig bigWig (signal p-value) 796.9 MB
ENCFF231EIU.bed bed (IDR ranked peaks) 2.5 MB
ENCFF268RNC.bed bed (IDR ranked peaks) 1.2 MB
ENCFF269JDR.bam bam (unfiltered alignments) 744.4 MB
ENCFF300XPS.bam bam (alignments) 382.8 MB
ENCFF309MTV.bam bam (unfiltered alignments) 540.9 MB
ENCFF320DMB.fastq fastq (reads) 570.8 MB
ENCFF339MGM.bed bed (peaks and background as input for IDR) 4.5 MB
ENCFF345LZQ.bigBed bigBed (conservative IDR thresholded peaks) 134.5 KB
ENCFF350KZF.bigBed bigBed (IDR thresholded peaks) 17.4 KB
ENCFF351IAK.bigWig bigWig (signal p-value) 430.6 MB
ENCFF352IEY.bam bam (unfiltered alignments) 741.2 MB
ENCFF388WKQ.bigWig bigWig (signal p-value) 500.1 MB
ENCFF395ZWB.bed bed (peaks and background as input for IDR) 5.9 MB
ENCFF418DIO.bigBed bigBed (peaks and background as input for IDR) 12.8 MB
ENCFF427SNN.bigBed bigBed (peaks and background as input for IDR) 12.8 MB
ENCFF449EAD.bigWig bigWig (fold change over control) 616.0 MB
ENCFF450TEZ.bed bed (conservative IDR thresholded peaks) 40.1 KB
ENCFF451MAQ.bed bed (IDR thresholded peaks) 13.7 KB
ENCFF465UMU.bed bed (optimal IDR thresholded peaks) 52.4 KB
ENCFF485JOX.bam bam (unfiltered alignments) 550.0 MB
ENCFF514RGZ.bigWig bigWig (fold change over control) 274.1 MB
ENCFF519IFN.bigWig bigWig (signal p-value) 789.8 MB
ENCFF544ANN.bam bam (alignments) 301.1 MB
ENCFF573SYG.bigWig bigWig (signal p-value) 737.4 MB
ENCFF583VZW.bam bam (alignments) 288.2 MB
ENCFF594WOK.bam bam (alignments) 288.6 MB
ENCFF647MGD.bigWig bigWig (fold change over control) 329.0 MB
ENCFF670UTH.bed bed (IDR thresholded peaks) 1.8 KB
ENCFF682SIY.bed bed (optimal IDR thresholded peaks) 46.7 KB
ENCFF700ANZ.bam bam (unfiltered alignments) 730.1 MB
ENCFF707TKH.bigWig bigWig (fold change over control) 596.6 MB
ENCFF713DPH.bed bed (peaks and background as input for IDR) 5.1 MB
ENCFF719ZHN.bed bed (conservative IDR thresholded peaks) 41.2 KB
ENCFF725OXP.bigWig bigWig (fold change over control) 406.4 MB
ENCFF727HDV.bigBed bigBed (peaks and background as input for IDR) 12.6 MB
ENCFF730DRK.bed bed (peaks and background as input for IDR) 4.0 MB
ENCFF765WAJ.bigBed bigBed (peaks and background as input for IDR) 10.3 MB
ENCFF857JAI.bigBed bigBed (optimal IDR thresholded peaks) 153.6 KB
ENCFF869YZV.bed bed (IDR ranked peaks) 2.9 MB
ENCFF871OPM.bed bed (peaks and background as input for IDR) 6.1 MB
ENCFF873HXR.bed bed (IDR ranked peaks) 428.0 KB
ENCFF884QPD.bam bam (alignments) 365.7 MB
ENCFF892RWK.bigWig bigWig (fold change over control) 597.2 MB
ENCFF903IYX.bigBed bigBed (peaks and background as input for IDR) 8.9 MB
ENCFF909ZXH.bigWig bigWig (signal p-value) 397.7 MB
ENCFF953XJD.bigWig bigWig (signal p-value) 391.7 MB
ENCFF957SXO.bam bam (alignments) 366.2 MB
ENCFF966YCV.bigBed bigBed (IDR thresholded peaks) 84.2 KB
ENCFF967OVS.bigWig bigWig (fold change over control) 216.9 MB
ENCFF982SSS.bed bed (conservative IDR thresholded peaks) 36.5 KB
ENCFF996EOY.fastq fastq (reads) 417.3 MB
ENCSR052PTN ENCSR · via encode_api

PCBP1 ChIP-seq in K562

Homo sapiens

66 data files
FileTypeSize
ENCFF039SFF.bigWig bigWig (signal p-value) 871.2 MB
ENCFF048VNL.bigBed bigBed (optimal IDR thresholded peaks) 427.0 KB
ENCFF086XWF.bed bed (peaks and background as input for IDR) 6.5 MB
ENCFF100USV.bigWig bigWig (fold change over control) 461.8 MB
ENCFF103HVZ.bed bed (conservative IDR thresholded peaks) 185.0 KB
ENCFF119AKS.bam bam (alignments) 382.4 MB
ENCFF120HAV.bigWig bigWig (signal p-value) 452.1 MB
ENCFF121LOV.bigBed bigBed (optimal IDR thresholded peaks) 418.2 KB
ENCFF136XJO.bigBed bigBed (IDR thresholded peaks) 198.1 KB
ENCFF139VSG.bam bam (alignments) 426.9 MB
ENCFF144CHJ.bed bed (conservative IDR thresholded peaks) 171.7 KB
ENCFF150WBW.bam bam (unfiltered alignments) 1.6 GB
ENCFF215TXN.bed bed (IDR thresholded peaks) 81.8 KB
ENCFF232TEF.bigBed bigBed (conservative IDR thresholded peaks) 414.8 KB
ENCFF289DTU.bam bam (unfiltered alignments) 1.6 GB
ENCFF329IGW.bed bed (IDR ranked peaks) 2.0 MB
ENCFF334DTH.bigBed bigBed (peaks and background as input for IDR) 12.5 MB
ENCFF340HZR.bigWig bigWig (fold change over control) 725.8 MB
ENCFF350OTU.bigBed bigBed (peaks and background as input for IDR) 12.6 MB
ENCFF351TEZ.bed bed (IDR ranked peaks) 4.0 MB
ENCFF382QWQ.bigBed bigBed (IDR thresholded peaks) 431.2 KB
ENCFF388PGZ.bigBed bigBed (peaks and background as input for IDR) 12.5 MB
ENCFF395QCV.bigBed bigBed (conservative IDR thresholded peaks) 406.8 KB
ENCFF398PTK.bigWig bigWig (signal p-value) 836.4 MB
ENCFF402WTE.bigWig bigWig (signal p-value) 458.3 MB
ENCFF430KJL.bigWig bigWig (signal p-value) 473.1 MB
ENCFF467RYH.bed bed (optimal IDR thresholded peaks) 184.9 KB
ENCFF476JMC.bigBed bigBed (peaks and background as input for IDR) 12.6 MB
ENCFF480SRL.bigWig bigWig (fold change over control) 319.8 MB
ENCFF481WGG.fastq fastq (reads) 1.2 GB
ENCFF497YTO.bigWig bigWig (signal p-value) 866.1 MB
ENCFF500CGR.bigBed bigBed (conservative IDR thresholded peaks) 395.3 KB
ENCFF508YDG.bed bed (IDR thresholded peaks) 52.1 KB
ENCFF521VPM.bigWig bigWig (fold change over control) 707.2 MB
ENCFF539TFD.bam bam (alignments) 410.4 MB
ENCFF543YPC.bigBed bigBed (peaks and background as input for IDR) 12.7 MB
ENCFF570KJN.bigWig bigWig (signal p-value) 814.7 MB
ENCFF608BOH.bigWig bigWig (fold change over control) 699.4 MB
ENCFF609JWE.bigWig bigWig (fold change over control) 286.1 MB
ENCFF612KIF.bigBed bigBed (peaks and background as input for IDR) 12.6 MB
ENCFF632GIY.bed bed (conservative IDR thresholded peaks) 181.3 KB
ENCFF641MET.fastq fastq (reads) 371.7 MB
ENCFF644FQD.fastq fastq (reads) 457.6 MB
ENCFF656LKP.bed bed (peaks and background as input for IDR) 5.5 MB
ENCFF661UAG.bed bed (peaks and background as input for IDR) 5.4 MB
ENCFF689IIZ.bed bed (IDR ranked peaks) 1.9 MB
ENCFF722HLE.bed bed (peaks and background as input for IDR) 5.3 MB
ENCFF732PIN.bam bam (unfiltered alignments) 1.4 GB
ENCFF748GCS.bed bed (peaks and background as input for IDR) 6.4 MB
ENCFF781ERK.bam bam (alignments) 399.0 MB
ENCFF806CJS.bam bam (alignments) 411.0 MB
ENCFF839MTO.bigWig bigWig (signal p-value) 491.4 MB
ENCFF850EDP.bigWig bigWig (signal p-value) 882.8 MB
ENCFF881LTT.bam bam (alignments) 381.8 MB
ENCFF882OWS.bigWig bigWig (fold change over control) 319.7 MB
ENCFF889CIT.fastq fastq (reads) 1.1 GB
ENCFF910GMC.bigWig bigWig (fold change over control) 288.6 MB
ENCFF919SCU.bigBed bigBed (IDR thresholded peaks) 151.2 KB
ENCFF921JTC.bed bed (peaks and background as input for IDR) 5.4 MB
ENCFF941RVL.bed bed (optimal IDR thresholded peaks) 193.8 KB
ENCFF944AWD.bigWig bigWig (fold change over control) 427.6 MB
ENCFF946JVA.bed bed (IDR ranked peaks) 4.0 MB
ENCFF956MGE.bed bed (IDR thresholded peaks) 194.7 KB
ENCFF975QBS.bam bam (unfiltered alignments) 1.5 GB
ENCFF984LCY.bam bam (unfiltered alignments) 1.4 GB
ENCFF990UAV.bam bam (unfiltered alignments) 1.4 GB
ENCSR339JTP ENCSR · via encode_api

RBM39 ChIP-seq in HepG2

Homo sapiens

62 data files
FileTypeSize
ENCFF035WXZ.bam bam (unfiltered alignments) 3.7 GB
ENCFF045YCX.bigBed bigBed (peaks and background as input for IDR) 12.0 MB
ENCFF050OGO.bigWig bigWig (fold change over control) 413.6 MB
ENCFF055MJF.bigWig bigWig (signal p-value) 800.0 MB
ENCFF055REI.bigBed bigBed (IDR thresholded peaks) 510.0 KB
ENCFF066SXN.bigWig bigWig (signal p-value) 819.5 MB
ENCFF080BMZ.bigWig bigWig (fold change over control) 411.2 MB
ENCFF084YZE.bigBed bigBed (optimal IDR thresholded peaks) 1.2 MB
ENCFF110LLV.bigWig bigWig (fold change over control) 429.6 MB
ENCFF114DFN.bam bam (unfiltered alignments) 1.9 GB
ENCFF115JJP.bam bam (unfiltered alignments) 3.7 GB
ENCFF123KOI.bed bed (IDR ranked peaks) 8.1 MB
ENCFF154AYA.bigWig bigWig (fold change over control) 546.9 MB
ENCFF155SKN.bam bam (alignments) 430.9 MB
ENCFF160DKY.bed bed (peaks and background as input for IDR) 6.2 MB
ENCFF161LJS.bigWig bigWig (signal p-value) 658.4 MB
ENCFF165OGY.bam bam (alignments) 584.6 MB
ENCFF195AFS.bed bed (IDR thresholded peaks) 176.7 KB
ENCFF208QUF.bed bed (peaks and background as input for IDR) 6.8 MB
ENCFF221GWO.bed bed (optimal IDR thresholded peaks) 580.6 KB
ENCFF229ZKH.bigWig bigWig (fold change over control) 521.8 MB
ENCFF261CIP.bigBed bigBed (peaks and background as input for IDR) 12.1 MB
ENCFF278JXM.bam bam (alignments) 431.6 MB
ENCFF315ODQ.bigBed bigBed (IDR thresholded peaks) 862.8 KB
ENCFF319LNQ.bigBed bigBed (optimal IDR thresholded peaks) 1.2 MB
ENCFF329PYW.bam bam (unfiltered alignments) 1.9 GB
ENCFF380WBW.fastq fastq (reads) 3.0 GB
ENCFF392OZZ.bam bam (unfiltered alignments) 3.8 GB
ENCFF395MZU.fastq fastq (reads) 427.9 MB
ENCFF398BYU.bigBed bigBed (IDR thresholded peaks) 387.4 KB
ENCFF399WWB.bed bed (IDR thresholded peaks) 254.7 KB
ENCFF420ALF.bed bed (optimal IDR thresholded peaks) 574.9 KB
ENCFF421JVQ.bam bam (alignments) 460.3 MB
ENCFF422CIB.fastq fastq (reads) 1.8 GB
ENCFF446DEE.bigBed bigBed (peaks and background as input for IDR) 12.2 MB
ENCFF456RAQ.bam bam (alignments) 585.5 MB
ENCFF463TIS.bam bam (alignments) 627.2 MB
ENCFF464APE.bed bed (peaks and background as input for IDR) 6.7 MB
ENCFF464FHS.bigWig bigWig (signal p-value) 720.4 MB
ENCFF477UDC.bed bed (IDR ranked peaks) 5.8 MB
ENCFF510EAY.bigWig bigWig (signal p-value) 736.9 MB
ENCFF532MRI.bed bed (IDR ranked peaks) 4.2 MB
ENCFF546VOE.bigBed bigBed (peaks and background as input for IDR) 12.1 MB
ENCFF604MMC.fastq fastq (reads) 434.3 MB
ENCFF614GWM.bigWig bigWig (fold change over control) 619.0 MB
ENCFF650BJE.bed bed (peaks and background as input for IDR) 6.4 MB
ENCFF668CJJ.bed bed (IDR thresholded peaks) 366.5 KB
ENCFF669NRR.bed bed (IDR ranked peaks) 6.9 MB
ENCFF721BWZ.bigWig bigWig (signal p-value) 835.3 MB
ENCFF755VUR.bigBed bigBed (peaks and background as input for IDR) 11.9 MB
ENCFF764IIZ.bigWig bigWig (fold change over control) 617.3 MB
ENCFF771JTA.bigWig bigWig (signal p-value) 643.1 MB
ENCFF796LVD.bed bed (conservative IDR thresholded peaks) 552.7 KB
ENCFF801JUH.bigBed bigBed (conservative IDR thresholded peaks) 1.1 MB
ENCFF805SAD.bigWig bigWig (signal p-value) 652.3 MB
ENCFF830CAJ.bigBed bigBed (peaks and background as input for IDR) 12.2 MB
ENCFF830QBU.bigWig bigWig (fold change over control) 650.0 MB
ENCFF852KFM.bam bam (unfiltered alignments) 2.0 GB
ENCFF946TCI.bigWig bigWig (fold change over control) 513.7 MB
ENCFF948VIO.bed bed (peaks and background as input for IDR) 6.2 MB
ENCFF956IIT.bed bed (peaks and background as input for IDR) 6.4 MB
ENCFF962FFL.bigWig bigWig (signal p-value) 803.4 MB
ENCSR429XTR ENCSR · via encode_api

TARDBP ChIP-seq in K562

Homo sapiens

64 data files
FileTypeSize
ENCFF003EQP.bigBed bigBed (optimal IDR thresholded peaks) 301.5 KB
ENCFF021QCU.bigBed bigBed (optimal IDR thresholded peaks) 383.7 KB
ENCFF022SPT.bigBed bigBed (IDR thresholded peaks) 380.3 KB
ENCFF059VEO.bed bed (conservative IDR thresholded peaks) 138.4 KB
ENCFF059WCS.bigBed bigBed (conservative IDR thresholded peaks) 382.9 KB
ENCFF070ZYL.bigWig bigWig (fold change over control) 428.5 MB
ENCFF073WKE.bam bam (alignments) 426.9 MB
ENCFF081LPP.bam bam (unfiltered alignments) 992.1 MB
ENCFF101NHJ.bigWig bigWig (signal p-value) 526.9 MB
ENCFF134EIU.bigWig bigWig (fold change over control) 668.3 MB
ENCFF156DSB.bed bed (IDR thresholded peaks) 157.9 KB
ENCFF165COO.bam bam (alignments) 391.9 MB
ENCFF216EBS.bam bam (alignments) 382.0 MB
ENCFF232QFN.bam bam (unfiltered alignments) 1.0 GB
ENCFF258RWG.bam bam (unfiltered alignments) 1004.9 MB
ENCFF269GTJ.bigBed bigBed (peaks and background as input for IDR) 12.2 MB
ENCFF282WIP.bed bed (conservative IDR thresholded peaks) 148.8 KB
ENCFF285OCH.bed bed (peaks and background as input for IDR) 6.5 MB
ENCFF295PNX.bigBed bigBed (peaks and background as input for IDR) 12.4 MB
ENCFF299MKR.bigWig bigWig (signal p-value) 804.6 MB
ENCFF308BXW.bigWig bigWig (fold change over control) 280.6 MB
ENCFF328UKA.bam bam (unfiltered alignments) 1.0 GB
ENCFF334YSY.bigWig bigWig (fold change over control) 278.9 MB
ENCFF349KWJ.bed bed (IDR thresholded peaks) 66.1 KB
ENCFF354NXH.bam bam (alignments) 415.9 MB
ENCFF368IHM.bed bed (peaks and background as input for IDR) 5.4 MB
ENCFF381RHV.bed bed (IDR ranked peaks) 4.9 MB
ENCFF443QPE.bigWig bigWig (signal p-value) 517.9 MB
ENCFF448YOS.bed bed (optimal IDR thresholded peaks) 157.8 KB
ENCFF465BRR.bigWig bigWig (fold change over control) 411.9 MB
ENCFF466OLG.bam bam (alignments) 381.4 MB
ENCFF468LRV.bam bam (unfiltered alignments) 1005.0 MB
ENCFF485CYK.bigBed bigBed (IDR thresholded peaks) 175.5 KB
ENCFF494CKB.bigWig bigWig (fold change over control) 285.8 MB
ENCFF499TQE.bigWig bigWig (fold change over control) 690.8 MB
ENCFF546RAG.bed bed (peaks and background as input for IDR) 5.4 MB
ENCFF564QOL.bed bed (conservative IDR thresholded peaks) 159.0 KB
ENCFF588VYL.bigWig bigWig (signal p-value) 465.6 MB
ENCFF590TBW.fastq fastq (reads) 963.5 MB
ENCFF595HIY.bigBed bigBed (peaks and background as input for IDR) 12.3 MB
ENCFF605WCC.bed bed (IDR ranked peaks) 2.5 MB
ENCFF627LCF.bed bed (IDR ranked peaks) 4.9 MB
ENCFF632WCQ.bigBed bigBed (peaks and background as input for IDR) 12.4 MB
ENCFF655XOA.bigWig bigWig (signal p-value) 717.0 MB
ENCFF668ZZF.bed bed (IDR thresholded peaks) 62.2 KB
ENCFF674XPK.bigWig bigWig (fold change over control) 296.9 MB
ENCFF682NGE.bam bam (alignments) 391.4 MB
ENCFF700XRO.bed bed (peaks and background as input for IDR) 6.5 MB
ENCFF711XQJ.bigWig bigWig (signal p-value) 650.2 MB
ENCFF722QBM.bigWig bigWig (signal p-value) 788.4 MB
ENCFF736RIM.bigBed bigBed (IDR thresholded peaks) 181.6 KB
ENCFF738CUO.bam bam (unfiltered alignments) 1.0 GB
ENCFF751WRF.bed bed (IDR ranked peaks) 2.5 MB
ENCFF794XXK.bigWig bigWig (fold change over control) 652.7 MB
ENCFF799NWP.bigWig bigWig (signal p-value) 885.8 MB
ENCFF809AYK.bed bed (peaks and background as input for IDR) 5.0 MB
ENCFF853JGP.bigBed bigBed (peaks and background as input for IDR) 12.3 MB
ENCFF862VLY.bigBed bigBed (conservative IDR thresholded peaks) 369.6 KB
ENCFF899AVP.bigWig bigWig (signal p-value) 446.5 MB
ENCFF905VXX.bed bed (optimal IDR thresholded peaks) 145.1 KB
ENCFF919ERM.bigBed bigBed (peaks and background as input for IDR) 12.3 MB
ENCFF958WJN.bed bed (peaks and background as input for IDR) 5.2 MB
ENCFF967VHN.bigBed bigBed (conservative IDR thresholded peaks) 292.5 KB
ENCFF983DFB.fastq fastq (reads) 923.8 MB
ENCSR519QAA ENCSR · via encode_api

HNRNPK ChIP-seq on HepG2

Homo sapiens

65 data files
FileTypeSize
ENCFF003ARN.bed bed (peaks and background as input for IDR) 5.4 MB
ENCFF004IMK.bigWig bigWig (fold change over control) 294.6 MB
ENCFF013TMF.bam bam (alignments) 495.2 MB
ENCFF034KZB.bed bed (peaks and background as input for IDR) 5.4 MB
ENCFF035OPG.bed bed (IDR thresholded peaks) 430.7 KB
ENCFF047RDW.bigBed bigBed (peaks and background as input for IDR) 12.7 MB
ENCFF071PKX.bigBed bigBed (peaks and background as input for IDR) 12.8 MB
ENCFF080YDK.fastq fastq (reads) 1.1 GB
ENCFF090ZXV.bed bed (IDR ranked peaks) 5.7 MB
ENCFF099BZU.bed bed (optimal IDR thresholded peaks) 421.0 KB
ENCFF126YPQ.bigWig bigWig (fold change over control) 666.6 MB
ENCFF144ONE.bigWig bigWig (signal p-value) 675.1 MB
ENCFF151QDV.bed bed (peaks and background as input for IDR) 5.4 MB
ENCFF183DGH.bigWig bigWig (signal p-value) 740.2 MB
ENCFF183ORE.bigWig bigWig (signal p-value) 399.7 MB
ENCFF208WUP.bam bam (unfiltered alignments) 1.6 GB
ENCFF221QCF.bam bam (unfiltered alignments) 908.5 MB
ENCFF251ZGT.bed bed (peaks and background as input for IDR) 5.4 MB
ENCFF261WPW.bed bed (IDR ranked peaks) 5.6 MB
ENCFF263GAL.bed bed (IDR thresholded peaks) 202.0 KB
ENCFF292JAR.bigWig bigWig (fold change over control) 301.7 MB
ENCFF310ACP.bigWig bigWig (signal p-value) 392.9 MB
ENCFF311IWM.bigBed bigBed (peaks and background as input for IDR) 12.7 MB
ENCFF315KSA.bigWig bigWig (fold change over control) 300.7 MB
ENCFF325BJT.bigWig bigWig (fold change over control) 414.8 MB
ENCFF336LWQ.bam bam (alignments) 507.1 MB
ENCFF339OYP.bigBed bigBed (peaks and background as input for IDR) 12.9 MB
ENCFF344SKX.bigWig bigWig (fold change over control) 685.3 MB
ENCFF348LMA.bam bam (unfiltered alignments) 893.2 MB
ENCFF371OHJ.bigWig bigWig (signal p-value) 666.7 MB
ENCFF395GAQ.bigWig bigWig (signal p-value) 449.5 MB
ENCFF407UHM.bed bed (peaks and background as input for IDR) 6.5 MB
ENCFF461MQJ.bed bed (IDR ranked peaks) 3.4 MB
ENCFF463MRT.bed bed (conservative IDR thresholded peaks) 391.1 KB
ENCFF493GNS.bigBed bigBed (IDR thresholded peaks) 917.3 KB
ENCFF497ROV.bigBed bigBed (peaks and background as input for IDR) 12.9 MB
ENCFF512YXS.bigWig bigWig (signal p-value) 739.8 MB
ENCFF542LXI.bed bed (conservative IDR thresholded peaks) 415.9 KB
ENCFF569ZLS.bam bam (alignments) 494.7 MB
ENCFF620ALT.bam bam (unfiltered alignments) 1.5 GB
ENCFF629IKB.bam bam (unfiltered alignments) 906.0 MB
ENCFF640TPX.fastq fastq (reads) 672.9 MB
ENCFF662AGT.bigWig bigWig (fold change over control) 417.7 MB
ENCFF695YNI.bigWig bigWig (fold change over control) 295.3 MB
ENCFF707DOC.bigBed bigBed (conservative IDR thresholded peaks) 896.6 KB
ENCFF779JTS.bigWig bigWig (signal p-value) 771.4 MB
ENCFF792GAN.bed bed (peaks and background as input for IDR) 6.5 MB
ENCFF794NZW.bigWig bigWig (fold change over control) 669.7 MB
ENCFF794QRP.bed bed (IDR thresholded peaks) 196.3 KB
ENCFF797XQG.bigBed bigBed (IDR thresholded peaks) 398.4 KB
ENCFF801WEN.bam bam (alignments) 518.4 MB
ENCFF813MAV.bigWig bigWig (signal p-value) 407.5 MB
ENCFF826MXP.bigBed bigBed (optimal IDR thresholded peaks) 915.6 KB
ENCFF828KXG.bed bed (optimal IDR thresholded peaks) 428.7 KB
ENCFF832WCX.bigBed bigBed (conservative IDR thresholded peaks) 690.6 KB
ENCFF845FAT.bigBed bigBed (IDR thresholded peaks) 403.8 KB
ENCFF872IMK.fastq fastq (reads) 692.5 MB
ENCFF899PGY.bed bed (conservative IDR thresholded peaks) 386.7 KB
ENCFF905BWU.bigBed bigBed (optimal IDR thresholded peaks) 904.2 KB
ENCFF920LBM.bigBed bigBed (conservative IDR thresholded peaks) 684.4 KB
ENCFF921UWK.bam bam (unfiltered alignments) 1.6 GB
ENCFF922BCC.bigBed bigBed (peaks and background as input for IDR) 12.7 MB
ENCFF930SNF.bed bed (IDR ranked peaks) 3.6 MB
ENCFF968IOT.bam bam (alignments) 505.3 MB
ENCFF979WGI.bam bam (alignments) 504.8 MB

Potentially related datasets 13

These accessions were text-mined from the PMC full text. They may be referenced for comparison, cited from other studies, or otherwise mentioned without being primary data for this paper.

Accession Source Title
GSE78509 GSE · GEO GEO ↗ Enhanced CLIP uncovers IMP protein-RNA targets in human pluripotent stem cells important for cell adhesion and survival
ENCSR795JHH ENCSR · ENCODE No title in the index
ENCSR369TWP ENCSR · ENCODE No title in the index
ENCSR876DCD ENCSR · ENCODE No title in the index
ENCSR413YAF ENCSR · ENCODE No title in the index
ENCSR870OLK ENCSR · ENCODE No title in the index
ENCSR456FVU ENCSR · ENCODE No title in the index
ENCSR999WIC ENCSR · ENCODE No title in the index
ENCFF533XPJ ENCFF · ENCODE No title in the index
ENCFF321JIT ENCFF · ENCODE No title in the index
ENCFF986DBN ENCFF · ENCODE No title in the index
ENCFF286GLL ENCFF · ENCODE No title in the index
GSE107768 GSE · GEO GEO ↗ Best practices for eCLIP experiments and analysis
Funding 8 grants
Grant Funder
R01 HG004659 NHGRI NIH HHS (United States)
R00 HG009530 NHGRI NIH HHS (United States)
U41 HG009889 NHGRI NIH HHS (United States)
K99 HG009530 NHGRI NIH HHS (United States)
T32 GM087237 NIGMS NIH HHS (United States)
U54 HG007005 NHGRI NIH HHS (United States)
R01 CA226898 NCI NIH HHS (United States)
R01 CA233477 NCI NIH HHS (United States)