GSE206674
GSE GEOSerRS mediates translational readthrough of through engagement of the selenocysteine incorporation machinery
Summary
Translational readthrough of UGA stop codons by selenocysteine-specific tRNAs (tRNASec) provide the basis for selenoprotein biosynthesis. Seryl-tRNA synthetase (SerRS) charges tRNASec with serine, which is modified into selenocysteine, and delivered to the ribosome by a designated elongation factor (eEFSec). We found that the selenocysteine incorporation machinery, including SerRS, tRNASec, and eEFSec, also mediated translational readthrough of non-selenocysteine genes, including VEGFA, to create C-terminally extended protein isoforms. SerRS bound a subset of non-selenocysteine mRNAs to facilitate serine insertion. SerRS-mediated readthrough is sufficient to reverse premature termination caused by a disease-causing nonsense mutation. Genes involved in hypoxia, angiogenesis, and adhesion are enriched among SerRS-bound genes. This regulatory function of SerRS in mRNA translation is dependent on its enzymatic activity but also a vertebrate-specific domain involved in non-tRNA nucleic acid interaction. Our findings offer an avenue for therapeutic targeting of nonsense mutations through regulation of existing protein synthesis machinery exclusively using unmodified factors.
Overall Design
eCLIP-seq for seryl-tRNA synthetase (SerRS) in MDA-MB-231 cells.
Analysis
View Data ProcessingSupplementary Files (1)
GEO Samples (6)
SRA Experiments (6) and Runs (6)
Total: 6936 MBRuns (1)
| Run | Spots | Bases | Size (MB) | Files | Link |
|---|---|---|---|---|---|
| SRR19783296 | 27338095 | 2733809500 | 1003.0 | SRA |
Runs (1)
| Run | Spots | Bases | Size (MB) | Files | Link |
|---|---|---|---|---|---|
| SRR19783295 | 47950502 | 4795050200 | 1703.0 | SRA |
Runs (1)
| Run | Spots | Bases | Size (MB) | Files | Link |
|---|---|---|---|---|---|
| SRR19783294 | 31158595 | 3115859500 | 1094.0 | SRA |
Runs (1)
| Run | Spots | Bases | Size (MB) | Files | Link |
|---|---|---|---|---|---|
| SRR19783293 | 29984285 | 2998428500 | 1020.0 | SRA |
Runs (1)
| Run | Spots | Bases | Size (MB) | Files | Link |
|---|---|---|---|---|---|
| SRR19783292 | 27911052 | 2791105200 | 944.0 | SRA |
Runs (1)
| Run | Spots | Bases | Size (MB) | Files | Link |
|---|---|---|---|---|---|
| SRR19783291 | 34457983 | 3445798300 | 1172.0 | SRA |
Linked Publications (1)
Potentially Related Publications (1)
This accession was text-mined from the PMC full text of these publications. It may be referenced for comparison or reused from another study rather than generated for them.
Data Files (6)
| Accession | File Name | Stored Type | Output Type | Mapping Assembly | Size | Download | |
|---|---|---|---|---|---|---|---|
| — | SRR19783291_GSM6260348 | RIP-Seq | 1.1 GB | link | |||
| — | SRR19783292_GSM6260347 | RIP-Seq | 944.0 MB | link | |||
| — | SRR19783293_GSM6260346 | RIP-Seq | 1020.0 MB | link | |||
| — | SRR19783294_GSM6260345 | RIP-Seq | 1.1 GB | link | |||
| — | SRR19783295_GSM6260344 | RIP-Seq | 1.7 GB | link | |||
| — | SRR19783296_GSM6260343 | RIP-Seq | 1003.0 MB | link |