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GSE206674

GSE GEO
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SerRS mediates translational readthrough of through engagement of the selenocysteine incorporation machinery

Organism: Homo sapiens
Platform: GPL30173
Samples: 6

Summary

Translational readthrough of UGA stop codons by selenocysteine-specific tRNAs (tRNASec) provide the basis for selenoprotein biosynthesis. Seryl-tRNA synthetase (SerRS) charges tRNASec with serine, which is modified into selenocysteine, and delivered to the ribosome by a designated elongation factor (eEFSec). We found that the selenocysteine incorporation machinery, including SerRS, tRNASec, and eEFSec, also mediated translational readthrough of non-selenocysteine genes, including VEGFA, to create C-terminally extended protein isoforms. SerRS bound a subset of non-selenocysteine mRNAs to facilitate serine insertion. SerRS-mediated readthrough is sufficient to reverse premature termination caused by a disease-causing nonsense mutation. Genes involved in hypoxia, angiogenesis, and adhesion are enriched among SerRS-bound genes. This regulatory function of SerRS in mRNA translation is dependent on its enzymatic activity but also a vertebrate-specific domain involved in non-tRNA nucleic acid interaction. Our findings offer an avenue for therapeutic targeting of nonsense mutations through regulation of existing protein synthesis machinery exclusively using unmodified factors.

Overall Design

eCLIP-seq for seryl-tRNA synthetase (SerRS) in MDA-MB-231 cells.

Analysis page is available for GSE206674.

Supplementary Files (1)

GSE206674_RAW.tar Download
GEO Samples (6)

SRA Experiments (6) and Runs (6)

Total: 6936 MB
SRX15827491 SRP383087 RIP-Seq SINGLE
Sample: SRS13518871
BioProject: PRJNA851750
BioSample: SAMN29249366
Platform: ILLUMINA
Instrument: NextSeq 2000
Organism: Homo sapiens
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR19783296 27338095 2733809500 1003.0 SRA
SRX15827492 SRP383087 RIP-Seq SINGLE
Sample: SRS13518873
BioProject: PRJNA851750
BioSample: SAMN29249365
Platform: ILLUMINA
Instrument: NextSeq 2000
Organism: Homo sapiens
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR19783295 47950502 4795050200 1703.0 SRA
SRX15827493 SRP383087 RIP-Seq SINGLE
Sample: SRS13518872
BioProject: PRJNA851750
BioSample: SAMN29249364
Platform: ILLUMINA
Instrument: NextSeq 2000
Organism: Homo sapiens
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR19783294 31158595 3115859500 1094.0 SRA
SRX15827494 SRP383087 RIP-Seq SINGLE
Sample: SRS13518874
BioProject: PRJNA851750
BioSample: SAMN29249363
Platform: ILLUMINA
Instrument: NextSeq 2000
Organism: Homo sapiens
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR19783293 29984285 2998428500 1020.0 SRA
SRX15827495 SRP383087 RIP-Seq SINGLE
Sample: SRS13518876
BioProject: PRJNA851750
BioSample: SAMN29249362
Platform: ILLUMINA
Instrument: NextSeq 2000
Organism: Homo sapiens
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR19783292 27911052 2791105200 944.0 SRA
SRX15827496 SRP383087 RIP-Seq SINGLE
Sample: SRS13518875
BioProject: PRJNA851750
BioSample: SAMN29249361
Platform: ILLUMINA
Instrument: NextSeq 2000
Organism: Homo sapiens
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR19783291 34457983 3445798300 1172.0 SRA

Linked Publications (1)

Potentially Related Publications (1)

This accession was text-mined from the PMC full text of these publications. It may be referenced for comparison or reused from another study rather than generated for them.

Data Files (6)

Accession File Name Stored Type Output Type Mapping Assembly Size Download
— SRR19783291_GSM6260348 RIP-Seq 1.1 GB link
— SRR19783292_GSM6260347 RIP-Seq 944.0 MB link
— SRR19783293_GSM6260346 RIP-Seq 1020.0 MB link
— SRR19783294_GSM6260345 RIP-Seq 1.1 GB link
— SRR19783295_GSM6260344 RIP-Seq 1.7 GB link
— SRR19783296_GSM6260343 RIP-Seq 1003.0 MB link