Seryl-tRNA synthetase promotes translational readthrough by mRNA binding and involvement of the selenocysteine incorporation machinery.
Ze Liu, Justin Wang, Yi Shi, Brian A Yee, Markus Terrey, Qian Zhang, Jenq-Chang Lee, Kuo-I Lin, Andrew H-J Wang, Susan L Ackerman, Gene W Yeo, Haissi Cui, Xiang-Lei Yang
Nucleic acids research · 2023 · Vol. 51 (19) · pp. 10768-10781
Abstract
Translational readthrough of UGA stop codons by selenocysteine-specific tRNA (tRNASec) enables the synthesis of selenoproteins. Seryl-tRNA synthetase (SerRS) charges tRNASec with serine, which is modified into selenocysteine and delivered to the ribosome by a designated elongation factor (eEFSec in eukaryotes). Here we found that components of the human selenocysteine incorporation machinery (SerRS, tRNASec, and eEFSec) also increased translational readthrough of non-selenocysteine genes, including VEGFA, to create C-terminally extended isoforms. SerRS recognizes target mRNAs through a stem-loop structure that resembles the variable loop of its cognate tRNAs. This function of SerRS depends on both its enzymatic activity and a vertebrate-specific domain. Through eCLIP-seq, we identified additional SerRS-interacting mRNAs as potential readthrough genes. Moreover, SerRS overexpression was sufficient to reverse premature termination caused by a pathogenic nonsense mutation. Our findings expand the repertoire of selenoprotein biosynthesis machinery and suggest an avenue for therapeutic targeting of nonsense mutations using endogenous factors.
Linked datasets 2
Seryl-tRNA synthetase promotes translational readthrough via mRNA binding by involving the selenocysteine incorporation machinery
Homo sapiens
12 data files
| File | Type | Size |
|---|---|---|
| SLA_101.fastq.gz | OTHER | 1.7 GB |
| SLA_102.fastq.gz | OTHER | 1.5 GB |
| SLA_89.fastq.gz | OTHER | 1.5 GB |
| SLA_95.fastq.gz | OTHER | 1.9 GB |
| SLA_97.fastq.gz | OTHER | 1.7 GB |
| SLA_99.fastq.gz | OTHER | 1.8 GB |
| SRR24267132_GSM7220275 | OTHER | 1.5 GB |
| SRR24267133_GSM7220274 | OTHER | 1.7 GB |
| SRR24267134_GSM7220273 | OTHER | 1.8 GB |
| SRR24267135_GSM7220272 | OTHER | 1.7 GB |
| SRR24267136_GSM7220271 | OTHER | 1.9 GB |
| SRR24267137_GSM7220270 | OTHER | 1.5 GB |
SerRS mediates translational readthrough of through engagement of the selenocysteine incorporation machinery
Homo sapiens
6 data files
| File | Type | Size |
|---|---|---|
| SRR19783291_GSM6260348 | RIP-Seq | 1.1 GB |
| SRR19783292_GSM6260347 | RIP-Seq | 944.0 MB |
| SRR19783293_GSM6260346 | RIP-Seq | 1020.0 MB |
| SRR19783294_GSM6260345 | RIP-Seq | 1.1 GB |
| SRR19783295_GSM6260344 | RIP-Seq | 1.7 GB |
| SRR19783296_GSM6260343 | RIP-Seq | 1003.0 MB |
Potentially related datasets 2
These accessions were text-mined from the PMC full text. They may be referenced for comparison, cited from other studies, or otherwise mentioned without being primary data for this paper.
| Accession | Source | Title |
|---|---|---|
| GSE206674 | GSE · GEO GEO ↗ | SerRS mediates translational readthrough of through engagement of the selenocysteine incorporation machinery |
| GSE230349 | GSE · GEO GEO ↗ | Seryl-tRNA synthetase promotes translational readthrough via mRNA binding by involving the selenocysteine incorporation machinery |
Analysis pipelines 2
| Pipeline | Assay | Steps | Dataset |
|---|---|---|---|
| GSE206674 eCLIP Data Processing geo_data_processing | eCLIP | 10 | GSE206674 |
| GSE230349 Ribo-seq Data Processing geo_data_processing | Ribo-seq | 8 | GSE230349 |
Funding 5 grants
| Grant | Funder |
|---|---|
| U24 HG009889 | NHGRI NIH HHS (United States) |
| R01 HG004659 | NHGRI NIH HHS (United States) |
| U41 HG009889 | NHGRI NIH HHS (United States) |
| R35 GM139627 | NIH HHS (United States) |
| R35 GM139627 | NIGMS NIH HHS (United States) |