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GSE134809

GSE GEO
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Single-cell analysis of Crohn’s disease lesions identifies a pathogenic cellular module associated with resistance to anti-TNF therapy

Organism: Homo sapiens
Platform: GPL18573
Samples: 31
Experiment Types:
Expression profiling by high throughput sequencing
Submitted: Jul 24 2019
Last Updated: May 12 2023
Status: Public on Aug 29 2019
Contact: Mamta,,Giri (Mount Sinai hospital)

Relations

BioProject: https://www.ncbi.nlm.nih.gov/bioproject/PRJNA556461 SRA: https://www.ncbi.nlm.nih.gov/sra?term=SRP216273

Summary

Clinical benefits of cytokine blockade in ileal Crohn’s disease (iCD) are limited to a subset of patients. Here we applied single cell technologies to iCD lesions to address whether cellular heterogeneity contributes to treatment resistance. We found that a subset of patients expressed a unique cellular module in inflamed tissues that consisted of IgG plasma cells, inflammatory mononuclear phagocytes, activated T cells and stromal cells, which we named the GIMATS module. Analysis of ligand-receptor interaction pairs identified a distinct connectivity network that likely drives the GIMATS module. Strikingly, the GIMATS module was also present in a subset of patients in 4 independent iCD cohorts (n=441), and its presence at diagnosis correlated with failure to achieve corticosteroid-free durable remission upon anti-TNF therapy. These results emphasize the limitations of current diagnostic assays and the potential for single cell mapping tools to identify novel biomarkers of treatment response and tailored therapeutic opportunities

Overall Design

Single cell seq analysis of paired resection ileal samples from inflamed and uninflamed area

Analysis (5 steps)

View Data Processing
Processing steps for GSE134809
  1. FASTQ were demultiplexed using Cell Ranger v2.0 and aligned to the Grch38 human
  2. Cell barcodes and unique molecular identifiers (UMIs) were extracted and “Raw” UMI matrix generated for each sample
  3. extracted cell-barcodes associated with at least 800 UMIs from the “Raw” output UMI matrices of CellRanger
  4. Epithelial cells, Red blood cells and cell-barcodess associated with high mitochondrial mRNA content were excluded by "in-silico" gating precedure which computes that fractoin of UMIs assocated with each gene signature.
  5. Thresholds and genes lists are detailed in the manuscripts.

Supplementary Files (1)

GSE134809_RAW.tar Download
GEO Samples (31)
GSM3972009 GSM3972010 GSM3972011 GSM3972012 GSM3972013 GSM3972014 GSM3972015 GSM3972016 GSM3972017 GSM3972018 GSM3972019 GSM3972020 GSM3972021 GSM3972022 GSM3972023 GSM3972024 GSM3972025 GSM3972026 GSM3972027 GSM3972028 GSM3972029 GSM3972030 GSM4761136 GSM4761137 GSM4761138 GSM4761139 GSM4761140 GSM4761141 GSM4761142 GSM4761143 GSM4761144

Dataset Citations (2)

PubMed citation (PMID 31474370)
PubMed citation (PMID 37080976)

SRA Experiments (31) and Runs (159)

Total: 134196 MB
SRX6584252 SRP216273 RNA-Seq PAIRED
GSM3972009: Ileal Involved 69; Homo sapiens; RNA-Seq
Sample: SRS5149947
BioProject: PRJNA556461
BioSample: SAMN12356585
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Homo sapiens
Sample attributes
source_name: Surgical resection
tissue: ileal
status: Involved
10x chemistry: V1
Original files (1)
Surgical resection
Runs (16)
Run Spots Bases Size (MB) Files Link
SRR9827631 5690582 517842962 331.88 69_P5_infla_S13_L001_I1_001.fastq.gz, 69_P5_infla_S13_L001_R1_001.fas… SRA
SRR9827632 4481538 407819958 262.43 69_P5_infla_S15_L002_I1_001.fastq.gz, 69_P5_infla_S15_L002_R1_001.fas… SRA
SRR9827633 4453864 405301624 259.75 69_P5_infla_S15_L003_I1_001.fastq.gz, 69_P5_infla_S15_L003_R1_001.fas… SRA
SRR9827634 4335980 394574180 253.88 69_P5_infla_S15_L004_I1_001.fastq.gz, 69_P5_infla_S15_L004_R1_001.fas… SRA
SRR9827635 3156209 287215019 184.33 69_P5_infla_S16_L001_I1_001.fastq.gz, 69_P5_infla_S16_L001_R1_001.fas… SRA
SRR9827636 3157231 287308021 185.33 69_P5_infla_S16_L002_I1_001.fastq.gz, 69_P5_infla_S16_L002_R1_001.fas… SRA
SRR9827637 3127754 284625614 182.88 69_P5_infla_S16_L003_I1_001.fastq.gz, 69_P5_infla_S16_L003_R1_001.fas… SRA
SRR9827638 3048921 277451811 179.04 69_P5_infla_S16_L004_I1_001.fastq.gz, 69_P5_infla_S16_L004_R1_001.fas… SRA
SRR9827639 5635655 512844605 330.43 69_P5_infla_S13_L002_I1_001.fastq.gz, 69_P5_infla_S13_L002_R1_001.fas… SRA
SRR9827640 5610944 510595904 327.55 69_P5_infla_S13_L003_I1_001.fastq.gz, 69_P5_infla_S13_L003_R1_001.fas… SRA
SRR9827641 5429790 494110890 318.38 69_P5_infla_S13_L004_I1_001.fastq.gz, 69_P5_infla_S13_L004_R1_001.fas… SRA
SRR9827642 6714450 611014950 390.84 69_P5_infla_S14_L001_I1_001.fastq.gz, 69_P5_infla_S14_L001_R1_001.fas… SRA
SRR9827643 6656731 605762521 389.52 69_P5_infla_S14_L002_I1_001.fastq.gz, 69_P5_infla_S14_L002_R1_001.fas… SRA
SRR9827644 6635441 603825131 386.61 69_P5_infla_S14_L003_I1_001.fastq.gz, 69_P5_infla_S14_L003_R1_001.fas… SRA
SRR9827645 6426802 584838982 375.99 69_P5_infla_S14_L004_I1_001.fastq.gz, 69_P5_infla_S14_L004_R1_001.fas… SRA
SRR9827646 4493759 408932069 261.84 69_P5_infla_S15_L001_I1_001.fastq.gz, 69_P5_infla_S15_L001_R1_001.fas… SRA
SRX6584253 SRP216273 RNA-Seq PAIRED
GSM3972010: Ileal Uninvolved 68; Homo sapiens; RNA-Seq
Sample: SRS5149948
BioProject: PRJNA556461
BioSample: SAMN12356584
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Homo sapiens
Sample attributes
source_name: Surgical resection
tissue: ileal
status: Uninvolved
10x chemistry: V1
Original files (1)
Surgical resection
Runs (16)
Run Spots Bases Size (MB) Files Link
SRR9827647 5174444 470874404 300.02 68_P5_uninfl_S10_L001_I1_001.fastq.gz, 68_P5_uninfl_S10_L001_R1_001.f… SRA
SRR9827648 4416526 401903866 257.87 SRR9827648.sralite, SRR9827648, 68_P5_uninfl_S12_L002_R3_001.fastq.gz… SRA
SRR9827649 4382521 398809411 254.78 68_P5_uninfl_S12_L003_I1_001.fastq.gz, 68_P5_uninfl_S12_L003_R1_001.f… SRA
SRR9827650 4250126 386761466 248.08 68_P5_uninfl_S12_L004_I1_001.fastq.gz, 68_P5_uninfl_S12_L004_R1_001.f… SRA
SRR9827651 4011514 365047774 233.73 68_P5_uninfl_S9_L001_I1_001.fastq.gz, 68_P5_uninfl_S9_L001_R1_001.fas… SRA
SRR9827652 4022598 366056418 235.62 68_P5_uninfl_S9_L002_I1_001.fastq.gz, 68_P5_uninfl_S9_L002_R1_001.fas… SRA
SRR9827653 3993508 363409228 232.9 68_P5_uninfl_S9_L003_I1_001.fastq.gz, 68_P5_uninfl_S9_L003_R1_001.fas… SRA
SRR9827654 3897190 354644290 228.32 68_P5_uninfl_S9_L004_I1_001.fastq.gz, 68_P5_uninfl_S9_L004_R1_001.fas… SRA
SRR9827727 5174045 470838095 301.7 68_P5_uninfl_S10_L002_I1_001.fastq.gz, 68_P5_uninfl_S10_L002_R1_001.f… SRA
SRR9827728 5141696 467894336 298.48 68_P5_uninfl_S10_L003_I1_001.fastq.gz, 68_P5_uninfl_S10_L003_R1_001.f… SRA
SRR9827729 4985792 453707072 290.64 68_P5_uninfl_S10_L004_I1_001.fastq.gz, 68_P5_uninfl_S10_L004_R1_001.f… SRA
SRR9827730 5098433 463957403 296.47 68_P5_uninfl_S11_L001_I1_001.fastq.gz, 68_P5_uninfl_S11_L001_R1_001.f… SRA
SRR9827731 5076163 461930833 296.79 68_P5_uninfl_S11_L002_I1_001.fastq.gz, 68_P5_uninfl_S11_L002_R1_001.f… SRA
SRR9827732 5054135 459926285 294.23 68_P5_uninfl_S11_L003_I1_001.fastq.gz, 68_P5_uninfl_S11_L003_R1_001.f… SRA
SRR9827733 4898709 445782519 286.41 68_P5_uninfl_S11_L004_I1_001.fastq.gz, 68_P5_uninfl_S11_L004_R1_001.f… SRA
SRR9827734 4408555 401178505 256.0 68_P5_uninfl_S12_L001_I1_001.fastq.gz, 68_P5_uninfl_S12_L001_R1_001.f… SRA
SRX6584254 SRP216273 RNA-Seq PAIRED
GSM3972011: Ileal Involved 122; Homo sapiens; RNA-Seq
Sample: SRS5149949
BioProject: PRJNA556461
BioSample: SAMN12356583
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Homo sapiens
Sample attributes
source_name: Surgical resection
tissue: ileal
status: Involved
10x chemistry: V2
Original files (1)
Surgical resection
Runs (4)
Run Spots Bases Size (MB) Files Link
SRR9827735 23039135 2050483015 1216.32 122_S1_L001_I1_001.fastq.gz, 122_S1_L001_R1_001.fastq.gz, 122_S1_L001… SRA
SRR9827736 22849782 2033630598 1216.93 122_S1_L002_I1_001.fastq.gz, 122_S1_L002_R1_001.fastq.gz, 122_S1_L002… SRA
SRR9827737 22608595 2012164955 1202.23 122_S1_L003_I1_001.fastq.gz, 122_S1_L003_R1_001.fastq.gz, 122_S1_L003… SRA
SRR9827738 22103066 1967172874 1179.21 122_S1_L004_I1_001.fastq.gz, 122_S1_L004_R1_001.fastq.gz, 122_S1_L004… SRA
SRX6584255 SRP216273 RNA-Seq PAIRED
GSM3972012: Ileal Uninvolved 123; Homo sapiens; RNA-Seq
Sample: SRS5149950
BioProject: PRJNA556461
BioSample: SAMN12356582
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Homo sapiens
Sample attributes
source_name: Surgical resection
tissue: ileal
status: Uninvolved
10x chemistry: V2
Original files (1)
Surgical resection
Runs (4)
Run Spots Bases Size (MB) Files Link
SRR9827739 21345415 1899741935 1124.04 123_S2_L001_I1_001.fastq.gz, 123_S2_L001_R1_001.fastq.gz, 123_S2_L001… SRA
SRR9827740 21303096 1895975544 1131.82 SRR9827740.sralite, SRR9827740, 123_S2_L002_R2_001.fastq.gz, 123_S2_L… SRA
SRR9827741 20978492 1867085788 1112.64 SRR9827741.sralite, SRR9827741, 123_S2_L003_R2_001.fastq.gz, 123_S2_L… SRA
SRR9827742 20559305 1829778145 1093.73 SRR9827742, SRR9827742.sralite, 123_S2_L004_R2_001.fastq.gz, 123_S2_L… SRA
SRX6584256 SRP216273 RNA-Seq PAIRED
GSM3972013: Ileal Involved 128; Homo sapiens; RNA-Seq
Sample: SRS5149951
BioProject: PRJNA556461
BioSample: SAMN12356581
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Homo sapiens
Sample attributes
source_name: Surgical resection
tissue: ileal
status: Involved
10x chemistry: V2
Original files (1)
Surgical resection
Runs (4)
Run Spots Bases Size (MB) Files Link
SRR9827743 19034228 1694046292 1019.4 128_S2_L001_I1_001.fastq.gz, 128_S2_L001_R1_001.fastq.gz, 128_S2_L001… SRA
SRR9827744 19286902 1716534278 1039.92 128_S2_L002_I1_001.fastq.gz, 128_S2_L002_R1_001.fastq.gz, 128_S2_L002… SRA
SRR9827745 19036981 1694291309 1023.39 128_S2_L003_I1_001.fastq.gz, 128_S2_L003_R1_001.fastq.gz, 128_S2_L003… SRA
SRR9827746 18596165 1655058685 1005.13 128_S2_L004_I1_001.fastq.gz, 128_S2_L004_R1_001.fastq.gz, 128_S2_L004… SRA
SRX6584257 SRP216273 RNA-Seq PAIRED
GSM3972014: Ileal Uninvolved 129; Homo sapiens; RNA-Seq
Sample: SRS5149952
BioProject: PRJNA556461
BioSample: SAMN12356580
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Homo sapiens
Sample attributes
source_name: Surgical resection
tissue: ileal
status: Uninvolved
10x chemistry: V2
Original files (1)
Surgical resection
Runs (4)
Run Spots Bases Size (MB) Files Link
SRR9827747 18820751 1675046839 998.4 SRR9827747.sralite, SRR9827747, 129_S3_L001_R2_001.fastq.gz, 129_S3_L… SRA
SRR9827748 19118312 1701529768 1021.83 129_S3_L002_I1_001.fastq.gz, 129_S3_L002_R1_001.fastq.gz, 129_S3_L002… SRA
SRR9827749 18879722 1680295258 1005.62 SRR9827749.sralite, SRR9827749, 129_S3_L003_R2_001.fastq.gz, 129_S3_L… SRA
SRR9827750 18437130 1640904570 987.56 SRR9827750.sralite, SRR9827750, 129_S3_L004_R2_001.fastq.gz, 129_S3_L… SRA
SRX6584258 SRP216273 RNA-Seq PAIRED
GSM3972015: Ileal Uninvolved 135; Homo sapiens; RNA-Seq
Sample: SRS5149953
BioProject: PRJNA556461
BioSample: SAMN12356579
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Homo sapiens
Sample attributes
source_name: Surgical resection
tissue: ileal
status: Uninvolved
10x chemistry: V2
Original files (1)
Surgical resection
Runs (4)
Run Spots Bases Size (MB) Files Link
SRR9827751 22067675 1964023075 1201.99 135_S2_L001_I1_001.fastq.gz, 135_S2_L001_R1_001.fastq.gz, 135_S2_L001… SRA
SRR9827752 22063302 1963633878 1209.01 135_S2_L002_I1_001.fastq.gz, 135_S2_L002_R1_001.fastq.gz, 135_S2_L002… SRA
SRR9827753 21344699 1899678211 1173.72 135_S2_L003_I1_001.fastq.gz, 135_S2_L003_R1_001.fastq.gz, 135_S2_L003… SRA
SRR9827754 20879876 1858308964 1145.86 135_S2_L004_I1_001.fastq.gz, 135_S2_L004_R1_001.fastq.gz, 135_S2_L004… SRA
SRX6584259 SRP216273 RNA-Seq PAIRED
GSM3972016: Ileal Involved 138; Homo sapiens; RNA-Seq
Sample: SRS5149954
BioProject: PRJNA556461
BioSample: SAMN12356578
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Homo sapiens
Sample attributes
source_name: Surgical resection
tissue: ileal
status: Involved
10x chemistry: V2
Original files (1)
Surgical resection
Runs (4)
Run Spots Bases Size (MB) Files Link
SRR9827655 20725902 1844605278 1141.78 138_S5_L003_I1_001.fastq.gz, 138_S5_L003_R1_001.fastq.gz, 138_S5_L003… SRA
SRR9827656 20229695 1800442855 1111.96 138_S5_L004_I1_001.fastq.gz, 138_S5_L004_R1_001.fastq.gz, 138_S5_L004… SRA
SRR9827755 21255619 1891750091 1160.1 138_S5_L001_I1_001.fastq.gz, 138_S5_L001_R1_001.fastq.gz, 138_S5_L001… SRA
SRR9827756 21349103 1900070167 1171.98 138_S5_L002_I1_001.fastq.gz, 138_S5_L002_R1_001.fastq.gz, 138_S5_L002… SRA
SRX6584260 SRP216273 RNA-Seq PAIRED
GSM3972017: Ileal Involved 158; Homo sapiens; RNA-Seq
Sample: SRS5149955
BioProject: PRJNA556461
BioSample: SAMN12356577
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Homo sapiens
Sample attributes
source_name: Surgical resection
tissue: ileal
status: Involved
10x chemistry: V2
Original files (1)
Surgical resection
Runs (4)
Run Spots Bases Size (MB) Files Link
SRR9827657 34855437 3102133893 1827.02 158_S2_L001_I1_001.fastq.gz, 158_S2_L001_R1_001.fastq.gz, 158_S2_L001… SRA
SRR9827658 36375132 3237386748 1871.64 158_S2_L002_I1_001.fastq.gz, 158_S2_L002_R1_001.fastq.gz, 158_S2_L002… SRA
SRR9827659 34467085 3067570565 1815.36 158_S2_L003_I1_001.fastq.gz, 158_S2_L003_R1_001.fastq.gz, 158_S2_L003… SRA
SRR9827660 34599662 3079369918 1784.37 158_S2_L004_I1_001.fastq.gz, 158_S2_L004_R1_001.fastq.gz, 158_S2_L004… SRA
SRX6584261 SRP216273 RNA-Seq PAIRED
GSM3972018: Ileal Uninvolved 159; Homo sapiens; RNA-Seq
Sample: SRS5149956
BioProject: PRJNA556461
BioSample: SAMN12356576
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Homo sapiens
Sample attributes
source_name: Surgical resection
tissue: ileal
status: Uninvolved
10x chemistry: V2
Original files (1)
Surgical resection
Runs (4)
Run Spots Bases Size (MB) Files Link
SRR9827661 31869411 2836377579 1664.85 159_S3_L001_I1_001.fastq.gz, 159_S3_L001_R1_001.fastq.gz, 159_S3_L001… SRA
SRR9827662 33193436 2954215804 1701.63 159_S3_L002_I1_001.fastq.gz, 159_S3_L002_R1_001.fastq.gz, 159_S3_L002… SRA
SRR9827663 31509725 2804365525 1654.53 159_S3_L003_I1_001.fastq.gz, 159_S3_L003_R1_001.fastq.gz, 159_S3_L003… SRA
SRR9827664 31578682 2810502698 1622.96 159_S3_L004_I1_001.fastq.gz, 159_S3_L004_R1_001.fastq.gz, 159_S3_L004… SRA
SRX6584262 SRP216273 RNA-Seq PAIRED
GSM3972019: Ileal Uninvolved 180; Homo sapiens; RNA-Seq
Sample: SRS5149957
BioProject: PRJNA556461
BioSample: SAMN12356575
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Homo sapiens
Sample attributes
source_name: Surgical resection
tissue: ileal
status: Uninvolved
10x chemistry: V2
Original files (1)
Surgical resection
Runs (8)
Run Spots Bases Size (MB) Files Link
SRR9827665 9750391 867784799 563.51 run230_180_S2_L001_I1_001.fastq.gz, run230_180_S2_L001_R1_001.fastq.g… SRA
SRR9827666 10115589 900287421 585.17 run230_180_S2_L002_I1_001.fastq.gz, run230_180_S2_L002_R1_001.fastq.g… SRA
SRR9827667 9903573 881417997 569.9 run230_180_S2_L003_I1_001.fastq.gz, run230_180_S2_L003_R1_001.fastq.g… SRA
SRR9827668 9580195 852637355 557.4 run230_180_S2_L004_I1_001.fastq.gz, run230_180_S2_L004_R1_001.fastq.g… SRA
SRR9827669 10008529 890759081 576.78 run231_180_S2_L001_I1_001.fastq.gz, run231_180_S2_L001_R1_001.fastq.g… SRA
SRR9827670 11377489 1012596521 657.34 run231_180_S2_L002_I1_001.fastq.gz, run231_180_S2_L002_R1_001.fastq.g… SRA
SRR9827671 10718714 953965546 616.36 run231_180_S2_L003_I1_001.fastq.gz, run231_180_S2_L003_R1_001.fastq.g… SRA
SRR9827672 10679065 950436785 620.65 run231_180_S2_L004_I1_001.fastq.gz, run231_180_S2_L004_R1_001.fastq.g… SRA
SRX6584263 SRP216273 RNA-Seq PAIRED
GSM3972020: Ileal Involved 181; Homo sapiens; RNA-Seq
Sample: SRS5149958
BioProject: PRJNA556461
BioSample: SAMN12356574
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Homo sapiens
Sample attributes
source_name: Surgical resection
tissue: ileal
status: Involved
10x chemistry: V2
Original files (1)
Surgical resection
Runs (8)
Run Spots Bases Size (MB) Files Link
SRR9827673 8797836 783007404 508.89 run230_181_S3_L001_I1_001.fastq.gz, run230_181_S3_L001_R1_001.fastq.g… SRA
SRR9827674 9122247 811879983 528.19 SRR9827674.sralite, SRR9827674, run230_181_S3_L002_R2_001.fastq.gz, r… SRA
SRR9827675 8940551 795709039 514.78 run230_181_S3_L003_I1_001.fastq.gz, run230_181_S3_L003_R1_001.fastq.g… SRA
SRR9827676 8652717 770091813 503.93 run230_181_S3_L004_I1_001.fastq.gz, run230_181_S3_L004_R1_001.fastq.g… SRA
SRR9827677 8933232 795057648 515.21 SRR9827677.sralite, SRR9827677, run231_181_S3_L001_R2_001.fastq.gz, r… SRA
SRR9827678 10169300 905067700 588.08 SRR9827678.sralite, SRR9827678, run231_181_S3_L002_R2_001.fastq.gz, r… SRA
SRR9827679 9589328 853450192 551.52 run231_181_S3_L003_I1_001.fastq.gz, run231_181_S3_L003_R1_001.fastq.g… SRA
SRR9827680 9554675 850366075 555.59 SRR9827680, SRR9827680.sralite, run231_181_S3_L004_R2_001.fastq.gz, r… SRA
SRX6584264 SRP216273 RNA-Seq PAIRED
GSM3972021: Ileal Uninvolved 186; Homo sapiens; RNA-Seq
Sample: SRS5149959
BioProject: PRJNA556461
BioSample: SAMN12356573
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Homo sapiens
Sample attributes
source_name: Surgical resection
tissue: ileal
status: Uninvolved
10x chemistry: V2
Original files (1)
Surgical resection
Runs (8)
Run Spots Bases Size (MB) Files Link
SRR9827681 9198891 818701299 531.17 run230_186_S5_L001_I1_001.fastq.gz, run230_186_S5_L001_R1_001.fastq.g… SRA
SRR9827682 9532347 848378883 551.02 run230_186_S5_L002_I1_001.fastq.gz, run230_186_S5_L002_R1_001.fastq.g… SRA
SRR9827683 9346578 831845442 537.19 run230_186_S5_L003_I1_001.fastq.gz, run230_186_S5_L003_R1_001.fastq.g… SRA
SRR9827684 9031293 803785077 525.13 run230_186_S5_L004_I1_001.fastq.gz, run230_186_S5_L004_R1_001.fastq.g… SRA
SRR9827685 9520074 847286586 548.08 run231_186_S5_L001_I1_001.fastq.gz, run231_186_S5_L001_R1_001.fastq.g… SRA
SRR9827686 10860341 966570349 626.98 run231_186_S5_L002_I1_001.fastq.gz, run231_186_S5_L002_R1_001.fastq.g… SRA
SRR9827687 10243976 911713864 588.18 run231_186_S5_L003_I1_001.fastq.gz, run231_186_S5_L003_R1_001.fastq.g… SRA
SRR9827688 10217891 909392299 593.25 run231_186_S5_L004_I1_001.fastq.gz, run231_186_S5_L004_R1_001.fastq.g… SRA
SRX6584265 SRP216273 RNA-Seq PAIRED
GSM3972022: Ileal Involved 187; Homo sapiens; RNA-Seq
Sample: SRS5149960
BioProject: PRJNA556461
BioSample: SAMN12356572
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Homo sapiens
Sample attributes
source_name: Surgical resection
tissue: ileal
status: Involved
10x chemistry: V2
Original files (1)
Surgical resection
Runs (8)
Run Spots Bases Size (MB) Files Link
SRR9827689 9286843 826529027 536.55 run230_187_S6_L001_I1_001.fastq.gz, run230_187_S6_L001_R1_001.fastq.g… SRA
SRR9827690 9645640 858461960 557.78 run230_187_S6_L002_I1_001.fastq.gz, run230_187_S6_L002_R1_001.fastq.g… SRA
SRR9827691 9445001 840605089 543.39 run230_187_S6_L003_I1_001.fastq.gz, run230_187_S6_L003_R1_001.fastq.g… SRA
SRR9827692 9133816 812909624 531.35 run230_187_S6_L004_I1_001.fastq.gz, run230_187_S6_L004_R1_001.fastq.g… SRA
SRR9827693 9543915 849408435 549.89 run231_187_S6_L001_I1_001.fastq.gz, run231_187_S6_L001_R1_001.fastq.g… SRA
SRR9827694 10874168 967800952 628.17 run231_187_S6_L002_I1_001.fastq.gz, run231_187_S6_L002_R1_001.fastq.g… SRA
SRR9827695 10256118 912794502 589.82 run231_187_S6_L003_I1_001.fastq.gz, run231_187_S6_L003_R1_001.fastq.g… SRA
SRR9827696 10218059 909407251 593.99 run231_187_S6_L004_I1_001.fastq.gz, run231_187_S6_L004_R1_001.fastq.g… SRA
SRX6584266 SRP216273 RNA-Seq PAIRED
GSM3972023: Ileal Uninvolved 189; Homo sapiens; RNA-Seq
Sample: SRS5149961
BioProject: PRJNA556461
BioSample: SAMN12356571
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Homo sapiens
Sample attributes
source_name: Surgical resection
tissue: ileal
status: Uninvolved
10x chemistry: V2
Original files (1)
Surgical resection
Runs (4)
Run Spots Bases Size (MB) Files Link
SRR9827697 26311218 2341698402 1447.11 189_S2_L001_I1_001.fastq.gz, 189_S2_L001_R1_001.fastq.gz, 189_S2_L001… SRA
SRR9827698 26101298 2323015522 1454.85 189_S2_L002_I1_001.fastq.gz, 189_S2_L002_R1_001.fastq.gz, 189_S2_L002… SRA
SRR9827699 25818113 2297812057 1448.16 189_S2_L003_I1_001.fastq.gz, 189_S2_L003_R1_001.fastq.gz, 189_S2_L003… SRA
SRR9827700 25960998 2310528822 1455.46 189_S2_L004_I1_001.fastq.gz, 189_S2_L004_R1_001.fastq.gz, 189_S2_L004… SRA
SRX6584267 SRP216273 RNA-Seq PAIRED
GSM3972024: Ileal Involved 190; Homo sapiens; RNA-Seq
Sample: SRS5149962
BioProject: PRJNA556461
BioSample: SAMN12356570
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Homo sapiens
Sample attributes
source_name: Surgical resection
tissue: ileal
status: Involved
10x chemistry: V2
Original files (1)
Surgical resection
Runs (4)
Run Spots Bases Size (MB) Files Link
SRR9827701 26089575 2321972175 1432.96 190_S3_L001_I1_001.fastq.gz, 190_S3_L001_R1_001.fastq.gz, 190_S3_L001… SRA
SRR9827702 25931821 2307932069 1443.91 190_S3_L002_I1_001.fastq.gz, 190_S3_L002_R1_001.fastq.gz, 190_S3_L002… SRA
SRR9827703 25557717 2274636813 1431.87 190_S3_L003_I1_001.fastq.gz, 190_S3_L003_R1_001.fastq.gz, 190_S3_L003… SRA
SRR9827704 25696611 2286998379 1438.89 190_S3_L004_I1_001.fastq.gz, 190_S3_L004_R1_001.fastq.gz, 190_S3_L004… SRA
SRX6584268 SRP216273 RNA-Seq PAIRED
GSM3972025: Ileal Uninvolved 192; Homo sapiens; RNA-Seq
Sample: SRS5149963
BioProject: PRJNA556461
BioSample: SAMN12356569
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Homo sapiens
Sample attributes
source_name: Surgical resection
tissue: ileal
status: Uninvolved
10x chemistry: V2
Original files (1)
Surgical resection
Runs (4)
Run Spots Bases Size (MB) Files Link
SRR9827705 37286153 3318467617 1984.03 192_S6_L001_I1_001.fastq.gz, 192_S6_L001_R1_001.fastq.gz, 192_S6_L001… SRA
SRR9827706 38801319 3453317391 2083.31 192_S6_L002_I1_001.fastq.gz, 192_S6_L002_R1_001.fastq.gz, 192_S6_L002… SRA
SRR9827707 37374351 3326317239 2036.6 192_S6_L003_I1_001.fastq.gz, 192_S6_L003_R1_001.fastq.gz, 192_S6_L003… SRA
SRR9827708 37233448 3313776872 2023.92 192_S6_L004_I1_001.fastq.gz, 192_S6_L004_R1_001.fastq.gz, 192_S6_L004… SRA
SRX6584269 SRP216273 RNA-Seq PAIRED
GSM3972026: Ileal Involved 193; Homo sapiens; RNA-Seq
Sample: SRS5149964
BioProject: PRJNA556461
BioSample: SAMN12356568
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Homo sapiens
Sample attributes
source_name: Surgical resection
tissue: ileal
status: Involved
10x chemistry: V2
Original files (1)
Surgical resection
Runs (4)
Run Spots Bases Size (MB) Files Link
SRR9827709 38871395 3459554155 2070.26 193_S5_L001_I1_001.fastq.gz, 193_S5_L001_R1_001.fastq.gz, 193_S5_L001… SRA
SRR9827710 40519500 3606235500 2177.36 193_S5_L002_I1_001.fastq.gz, 193_S5_L002_R1_001.fastq.gz, 193_S5_L002… SRA
SRR9827711 39091553 3479148217 2131.36 193_S5_L003_I1_001.fastq.gz, 193_S5_L003_R1_001.fastq.gz, 193_S5_L003… SRA
SRR9827712 38911915 3463160435 2116.47 193_S5_L004_I1_001.fastq.gz, 193_S5_L004_R1_001.fastq.gz, 193_S5_L004… SRA
SRX6584270 SRP216273 RNA-Seq PAIRED
GSM3972027: Ileal Uninvolved 195; Homo sapiens; RNA-Seq
Sample: SRS5149965
BioProject: PRJNA556461
BioSample: SAMN12356589
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Homo sapiens
Sample attributes
source_name: Surgical resection
tissue: ileal
status: Uninvolved
10x chemistry: V2
Original files (1)
Surgical resection
Runs (3)
Run Spots Bases Size (MB) Files Link
SRR9827713 17772722 1581772258 965.65 195_S5_L002_I1_001.fastq.gz, 195_S5_L002_R1_001.fastq.gz, 195_S5_L002… SRA
SRR9827714 18220298 1621606522 980.37 195_S5_L003_I1_001.fastq.gz, 195_S5_L003_R1_001.fastq.gz, 195_S5_L003… SRA
SRR9827715 17699085 1575218565 952.68 195_S5_L004_I1_001.fastq.gz, 195_S5_L004_R1_001.fastq.gz, 195_S5_L004… SRA
SRX6584271 SRP216273 RNA-Seq PAIRED
GSM3972028: Ileal Involved 196; Homo sapiens; RNA-Seq
Sample: SRS5149966
BioProject: PRJNA556461
BioSample: SAMN12356588
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Homo sapiens
Sample attributes
source_name: Surgical resection
tissue: ileal
status: Involved
10x chemistry: V2
Original files (1)
Surgical resection
Runs (3)
Run Spots Bases Size (MB) Files Link
SRR9827716 23962576 2132669264 1293.19 196_S4_L001_I1_001.fastq.gz, 196_S4_L001_R1_001.fastq.gz, 196_S4_L001… SRA
SRR9827717 24596708 2189107012 1335.49 196_S4_L002_I1_001.fastq.gz, 196_S4_L002_R1_001.fastq.gz, 196_S4_L002… SRA
SRR9827718 25368677 2257812253 1359.61 196_S4_L003_I1_001.fastq.gz, 196_S4_L003_R1_001.fastq.gz, 196_S4_L003… SRA
SRX6584272 SRP216273 RNA-Seq PAIRED
GSM3972029: Ileal Uninvolved 208; Homo sapiens; RNA-Seq
Sample: SRS5149967
BioProject: PRJNA556461
BioSample: SAMN12356587
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Homo sapiens
Sample attributes
source_name: Surgical resection
tissue: ileal
status: Uninvolved
10x chemistry: V2
Original files (1)
Surgical resection
Runs (4)
Run Spots Bases Size (MB) Files Link
SRR9827719 28930323 2574798747 1476.37 208_S2_L001_I1_001.fastq.gz, 208_S2_L001_R1_001.fastq.gz, 208_S2_L001… SRA
SRR9827720 29238719 2602245991 1496.49 208_S2_L002_I1_001.fastq.gz, 208_S2_L002_R1_001.fastq.gz, 208_S2_L002… SRA
SRR9827721 29526380 2627847820 1515.41 208_S2_L003_I1_001.fastq.gz, 208_S2_L003_R1_001.fastq.gz, 208_S2_L003… SRA
SRR9827722 28606479 2545976631 1460.26 208_S2_L004_I1_001.fastq.gz, 208_S2_L004_R1_001.fastq.gz, 208_S2_L004… SRA
SRX6584273 SRP216273 RNA-Seq PAIRED
GSM3972030: Ileal Involved 209; Homo sapiens; RNA-Seq
Sample: SRS5149968
BioProject: PRJNA556461
BioSample: SAMN12356586
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Homo sapiens
Sample attributes
source_name: Surgical resection
tissue: ileal
status: Involved
10x chemistry: V2
Original files (1)
Surgical resection
Runs (4)
Run Spots Bases Size (MB) Files Link
SRR9827723 27128586 2414444154 1387.45 209_S1_L001_I1_001.fastq.gz, 209_S1_L001_R1_001.fastq.gz, 209_S1_L001… SRA
SRR9827724 27415685 2439995965 1405.75 209_S1_L002_I1_001.fastq.gz, 209_S1_L002_R1_001.fastq.gz, 209_S1_L002… SRA
SRR9827725 27707025 2465925225 1424.05 209_S1_L003_I1_001.fastq.gz, 209_S1_L003_R1_001.fastq.gz, 209_S1_L003… SRA
SRR9827726 26834681 2388286609 1372.5 209_S1_L004_I1_001.fastq.gz, 209_S1_L004_R1_001.fastq.gz, 209_S1_L004… SRA
SRX9053446 SRP216273 RNA-Seq PAIRED
GSM4761136: 67; PBMC; Homo sapiens; RNA-Seq
Sample: SRS7303365
BioProject: PRJNA556461
BioSample: SAMN15960933
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Homo sapiens
Sample attributes
source_name: PBMC
patient id: 67
tissue: Blood
10x chemistry: V1
Original files (1)
PBMC
Runs (4)
Run Spots Bases Size (MB) Files Link
SRR12565234 336384 30610944 14.82 67_P5_PBMC_S5_L001_I1_001.fastq.gz, 67_P5_PBMC_S5_L001_R1_001.fastq.g… SRA
SRR12565235 329873 30018443 14.65 67_P5_PBMC_S5_L002_I1_001.fastq.gz, 67_P5_PBMC_S5_L002_R1_001.fastq.g… SRA
SRR12565236 337708 30731428 14.89 67_P5_PBMC_S5_L003_I1_001.fastq.gz, 67_P5_PBMC_S5_L003_R1_001.fastq.g… SRA
SRR12565237 305766 27824706 13.57 67_P5_PBMC_S5_L004_I1_001.fastq.gz, 67_P5_PBMC_S5_L004_R1_001.fastq.g… SRA
SRX9053447 SRP216273 RNA-Seq PAIRED
GSM4761137: 126; PBMC; Homo sapiens; RNA-Seq
Sample: SRS7303366
BioProject: PRJNA556461
BioSample: SAMN15960932
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Homo sapiens
Sample attributes
source_name: PBMC
patient id: 126
tissue: Blood
10x chemistry: V2
Original files (1)
PBMC
Runs (3)
Run Spots Bases Size (MB) Files Link
SRR12565238 18974169 1688701041 698.89 126_S5_L001_I1_001.fastq.gz, 126_S5_L001_R1_001.fastq.gz, 126_S5_L001… SRA
SRR12565239 19251030 1713341670 718.95 126_S5_L002_I1_001.fastq.gz, 126_S5_L002_R1_001.fastq.gz, 126_S5_L002… SRA
SRR12565240 18800267 1673223763 699.71 126_S5_L003_I1_001.fastq.gz, 126_S5_L003_R1_001.fastq.gz, 126_S5_L003… SRA
SRX9053448 SRP216273 RNA-Seq PAIRED
GSM4761138: 127; PBMC; Homo sapiens; RNA-Seq
Sample: SRS7303367
BioProject: PRJNA556461
BioSample: SAMN15960931
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Homo sapiens
Sample attributes
source_name: PBMC
patient id: 127
tissue: Blood
10x chemistry: V2
Original files (1)
PBMC
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR12565241 27122934 2413941126 1019.9 127_S1_L003_I1_001.fastq.gz, 127_S1_L003_R1_001.fastq.gz, 127_S1_L003… SRA
SRR12565242 26515319 2359863391 1004.81 127_S1_L004_I1_001.fastq.gz, 127_S1_L004_R1_001.fastq.gz, 127_S1_L004… SRA
SRX9053449 SRP216273 RNA-Seq PAIRED
GSM4761139: 134; PBMC; Homo sapiens; RNA-Seq
Sample: SRS7303368
BioProject: PRJNA556461
BioSample: SAMN15960939
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Homo sapiens
Sample attributes
source_name: PBMC
patient id: 134
tissue: Blood
10x chemistry: V2
Original files (1)
PBMC
Runs (4)
Run Spots Bases Size (MB) Files Link
SRR12565243 24946060 2220199340 962.3 134_S1_L001_I1_001.fastq.gz, 134_S1_L001_R1_001.fastq.gz, 134_S1_L001… SRA
SRR12565244 25173521 2240443369 979.35 134_S1_L002_I1_001.fastq.gz, 134_S1_L002_R1_001.fastq.gz, 134_S1_L002… SRA
SRR12565245 24349838 2167135582 952.44 134_S1_L003_I1_001.fastq.gz, 134_S1_L003_R1_001.fastq.gz, 134_S1_L003… SRA
SRR12565246 23786360 2116986040 927.05 134_S1_L004_I1_001.fastq.gz, 134_S1_L004_R1_001.fastq.gz, 134_S1_L004… SRA
SRX9053450 SRP216273 RNA-Seq PAIRED
GSM4761140: 157; PBMC; Homo sapiens; RNA-Seq
Sample: SRS7303369
BioProject: PRJNA556461
BioSample: SAMN15960935
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Homo sapiens
Sample attributes
source_name: PBMC
patient id: 157
tissue: Blood
10x chemistry: V2
Original files (1)
PBMC
Runs (4)
Run Spots Bases Size (MB) Files Link
SRR12565247 38312152 3103284312 1220.47 157_S1_L001_R1_001.fastq.gz, 157_S1_L001_R2_001.fastq.gz, SRR12565247… SRA
SRR12565248 39971816 3237717096 1236.32 157_S1_L002_R1_001.fastq.gz, 157_S1_L002_R2_001.fastq.gz, SRR12565248… SRA
SRR12565249 37894395 3069445995 1216.64 157_S1_L003_R1_001.fastq.gz, 157_S1_L003_R2_001.fastq.gz, SRR12565249… SRA
SRR12565250 38035257 3080855817 1179.63 157_S1_L004_R1_001.fastq.gz, 157_S1_L004_R2_001.fastq.gz, SRR12565250… SRA
SRX9053451 SRP216273 RNA-Seq PAIRED
GSM4761141: 179; PBMC; Homo sapiens; RNA-Seq
Sample: SRS7303370
BioProject: PRJNA556461
BioSample: SAMN15960934
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Homo sapiens
Sample attributes
source_name: PBMC
patient id: 179
tissue: Blood
10x chemistry: V2
Original files (1)
PBMC
Runs (4)
Run Spots Bases Size (MB) Files Link
SRR12565251 10344264 920639496 446.12 179_S1_L001_I1_001.fastq.gz, 179_S1_L001_R1_001.fastq.gz, 179_S1_L001… SRA
SRR12565252 10715432 953673448 462.7 179_S1_L002_I1_001.fastq.gz, 179_S1_L002_R1_001.fastq.gz, 179_S1_L002… SRA
SRR12565253 10494380 933999820 450.06 179_S1_L003_I1_001.fastq.gz, 179_S1_L003_R1_001.fastq.gz, 179_S1_L003… SRA
SRR12565254 10164387 904630443 442.31 179_S1_L004_I1_001.fastq.gz, 179_S1_L004_R1_001.fastq.gz, 179_S1_L004… SRA
SRX9053452 SRP216273 RNA-Seq PAIRED
GSM4761142: 185; PBMC; Homo sapiens; RNA-Seq
Sample: SRS7303371
BioProject: PRJNA556461
BioSample: SAMN15960938
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Homo sapiens
Sample attributes
source_name: PBMC
patient id: 185
tissue: Blood
10x chemistry: V2
Original files (1)
PBMC
Runs (4)
Run Spots Bases Size (MB) Files Link
SRR12565255 8728966 776877974 375.73 185_S4_L001_I1_001.fastq.gz, 185_S4_L001_R1_001.fastq.gz, 185_S4_L001… SRA
SRR12565256 9042156 804751884 389.77 185_S4_L002_I1_001.fastq.gz, 185_S4_L002_R1_001.fastq.gz, 185_S4_L002… SRA
SRR12565257 8862723 788782347 379.15 185_S4_L003_I1_001.fastq.gz, 185_S4_L003_R1_001.fastq.gz, 185_S4_L003… SRA
SRR12565258 8564700 762258300 372.08 185_S4_L004_I1_001.fastq.gz, 185_S4_L004_R1_001.fastq.gz, 185_S4_L004… SRA
SRX9053453 SRP216273 RNA-Seq PAIRED
GSM4761143: 191; PBMC; Homo sapiens; RNA-Seq
Sample: SRS7303372
BioProject: PRJNA556461
BioSample: SAMN15960937
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Homo sapiens
Sample attributes
source_name: PBMC
patient id: CD14P
tissue: Blood
10x chemistry: V2
Original files (1)
PBMC
Runs (4)
Run Spots Bases Size (MB) Files Link
SRR12565259 818 72802 0.11 CD14P_S4_L001_I1_001.fastq.gz, CD14P_S4_L001_R1_001.fastq.gz, CD14P_S… SRA
SRR12565260 847 75383 0.11 CD14P_S4_L002_I1_001.fastq.gz, CD14P_S4_L002_R1_001.fastq.gz, CD14P_S… SRA
SRR12565261 886 78854 0.12 CD14P_S4_L003_I1_001.fastq.gz, CD14P_S4_L003_R1_001.fastq.gz, CD14P_S… SRA
SRR12565262 556 49484 0.1 CD14P_S4_L004_I1_001.fastq.gz, CD14P_S4_L004_R1_001.fastq.gz, CD14P_S… SRA
SRX9053454 SRP216273 RNA-Seq PAIRED
GSM4761144: 194; PBMC; Homo sapiens; RNA-Seq
Sample: SRS7303373
BioProject: PRJNA556461
BioSample: SAMN15960936
Platform: ILLUMINA
Instrument: NextSeq 500
Organism: Homo sapiens
Sample attributes
source_name: PBMC
patient id: CD15P
tissue: Blood
10x chemistry: V2
Original files (1)
PBMC
Runs (4)
Run Spots Bases Size (MB) Files Link
SRR12565263 24265692 2159646588 925.1 CD15P_S3_L001_I1_001.fastq.gz, CD15P_S3_L001_R1_001.fastq.gz, CD15P_S… SRA
SRR12565264 24965496 2221929144 961.1 CD15P_S3_L002_I1_001.fastq.gz, CD15P_S3_L002_R1_001.fastq.gz, CD15P_S… SRA
SRR12565265 25451186 2265155554 963.45 CD15P_S3_L003_I1_001.fastq.gz, CD15P_S3_L003_R1_001.fastq.gz, CD15P_S… SRA
SRR12565266 24719784 2200060776 936.43 CD15P_S3_L004_I1_001.fastq.gz, CD15P_S3_L004_R1_001.fastq.gz, CD15P_S… SRA

Linked Publications (1)

RNA binding protein DDX5 restricts RORγt<sup>+</sup> T<sub>reg</sub> suppressor function to promote intestine inflammation.
Science advances · 2023

Data Files (159)

Accession File Name Stored Type Output Type Mapping Assembly Size Download
— 122_S1_L001_I1_001.fastq.gz RNA-Seq 1.2 GB link
— 122_S1_L002_I1_001.fastq.gz RNA-Seq 1.2 GB link
— 122_S1_L003_I1_001.fastq.gz RNA-Seq 1.2 GB link
— 122_S1_L004_I1_001.fastq.gz RNA-Seq 1.2 GB link
— 123_S2_L001_I1_001.fastq.gz RNA-Seq 1.1 GB link
— 126_S5_L001_I1_001.fastq.gz RNA-Seq 698.9 MB link
— 126_S5_L002_I1_001.fastq.gz RNA-Seq 718.9 MB link
— 126_S5_L003_I1_001.fastq.gz RNA-Seq 699.7 MB link
— 127_S1_L003_I1_001.fastq.gz RNA-Seq 1019.9 MB link
— 127_S1_L004_I1_001.fastq.gz RNA-Seq 1004.8 MB link
— 128_S2_L001_I1_001.fastq.gz RNA-Seq 1019.4 MB link
— 128_S2_L002_I1_001.fastq.gz RNA-Seq 1.0 GB link
— 128_S2_L003_I1_001.fastq.gz RNA-Seq 1023.4 MB link
— 128_S2_L004_I1_001.fastq.gz RNA-Seq 1005.1 MB link
— 129_S3_L002_I1_001.fastq.gz RNA-Seq 1021.8 MB link
— 134_S1_L001_I1_001.fastq.gz RNA-Seq 962.3 MB link
— 134_S1_L002_I1_001.fastq.gz RNA-Seq 979.3 MB link
— 134_S1_L003_I1_001.fastq.gz RNA-Seq 952.4 MB link
— 134_S1_L004_I1_001.fastq.gz RNA-Seq 927.0 MB link
— 135_S2_L001_I1_001.fastq.gz RNA-Seq 1.2 GB link
— 135_S2_L002_I1_001.fastq.gz RNA-Seq 1.2 GB link
— 135_S2_L003_I1_001.fastq.gz RNA-Seq 1.1 GB link
— 135_S2_L004_I1_001.fastq.gz RNA-Seq 1.1 GB link
— 138_S5_L001_I1_001.fastq.gz RNA-Seq 1.1 GB link
— 138_S5_L002_I1_001.fastq.gz RNA-Seq 1.1 GB link
— 138_S5_L003_I1_001.fastq.gz RNA-Seq 1.1 GB link
— 138_S5_L004_I1_001.fastq.gz RNA-Seq 1.1 GB link
— 157_S1_L001_R1_001.fastq.gz RNA-Seq 1.2 GB link
— 157_S1_L002_R1_001.fastq.gz RNA-Seq 1.2 GB link
— 157_S1_L003_R1_001.fastq.gz RNA-Seq 1.2 GB link
— 157_S1_L004_R1_001.fastq.gz RNA-Seq 1.2 GB link
— 158_S2_L001_I1_001.fastq.gz RNA-Seq 1.8 GB link
— 158_S2_L002_I1_001.fastq.gz RNA-Seq 1.8 GB link
— 158_S2_L003_I1_001.fastq.gz RNA-Seq 1.8 GB link
— 158_S2_L004_I1_001.fastq.gz RNA-Seq 1.7 GB link
— 159_S3_L001_I1_001.fastq.gz RNA-Seq 1.6 GB link
— 159_S3_L002_I1_001.fastq.gz RNA-Seq 1.7 GB link
— 159_S3_L003_I1_001.fastq.gz RNA-Seq 1.6 GB link
— 159_S3_L004_I1_001.fastq.gz RNA-Seq 1.6 GB link
— 179_S1_L001_I1_001.fastq.gz RNA-Seq 446.1 MB link
— 179_S1_L002_I1_001.fastq.gz RNA-Seq 462.7 MB link
— 179_S1_L003_I1_001.fastq.gz RNA-Seq 450.1 MB link
— 179_S1_L004_I1_001.fastq.gz RNA-Seq 442.3 MB link
— 185_S4_L001_I1_001.fastq.gz RNA-Seq 375.7 MB link
— 185_S4_L002_I1_001.fastq.gz RNA-Seq 389.8 MB link
— 185_S4_L003_I1_001.fastq.gz RNA-Seq 379.1 MB link
— 185_S4_L004_I1_001.fastq.gz RNA-Seq 372.1 MB link
— 189_S2_L001_I1_001.fastq.gz RNA-Seq 1.4 GB link
— 189_S2_L002_I1_001.fastq.gz RNA-Seq 1.4 GB link
— 189_S2_L003_I1_001.fastq.gz RNA-Seq 1.4 GB link
— 189_S2_L004_I1_001.fastq.gz RNA-Seq 1.4 GB link
— 190_S3_L001_I1_001.fastq.gz RNA-Seq 1.4 GB link
— 190_S3_L002_I1_001.fastq.gz RNA-Seq 1.4 GB link
— 190_S3_L003_I1_001.fastq.gz RNA-Seq 1.4 GB link
— 190_S3_L004_I1_001.fastq.gz RNA-Seq 1.4 GB link
— 192_S6_L001_I1_001.fastq.gz RNA-Seq 1.9 GB link
— 192_S6_L002_I1_001.fastq.gz RNA-Seq 2.0 GB link
— 192_S6_L003_I1_001.fastq.gz RNA-Seq 2.0 GB link
— 192_S6_L004_I1_001.fastq.gz RNA-Seq 2.0 GB link
— 193_S5_L001_I1_001.fastq.gz RNA-Seq 2.0 GB link
— 193_S5_L002_I1_001.fastq.gz RNA-Seq 2.1 GB link
— 193_S5_L003_I1_001.fastq.gz RNA-Seq 2.1 GB link
— 193_S5_L004_I1_001.fastq.gz RNA-Seq 2.1 GB link
— 195_S5_L002_I1_001.fastq.gz RNA-Seq 965.6 MB link
— 195_S5_L003_I1_001.fastq.gz RNA-Seq 980.4 MB link
— 195_S5_L004_I1_001.fastq.gz RNA-Seq 952.7 MB link
— 196_S4_L001_I1_001.fastq.gz RNA-Seq 1.3 GB link
— 196_S4_L002_I1_001.fastq.gz RNA-Seq 1.3 GB link
— 196_S4_L003_I1_001.fastq.gz RNA-Seq 1.3 GB link
— 208_S2_L001_I1_001.fastq.gz RNA-Seq 1.4 GB link
— 208_S2_L002_I1_001.fastq.gz RNA-Seq 1.5 GB link
— 208_S2_L003_I1_001.fastq.gz RNA-Seq 1.5 GB link
— 208_S2_L004_I1_001.fastq.gz RNA-Seq 1.4 GB link
— 209_S1_L001_I1_001.fastq.gz RNA-Seq 1.4 GB link
— 209_S1_L002_I1_001.fastq.gz RNA-Seq 1.4 GB link
— 209_S1_L003_I1_001.fastq.gz RNA-Seq 1.4 GB link
— 209_S1_L004_I1_001.fastq.gz RNA-Seq 1.3 GB link
— 67_P5_PBMC_S5_L001_I1_001.fastq.gz RNA-Seq 14.8 MB link
— 67_P5_PBMC_S5_L002_I1_001.fastq.gz RNA-Seq 14.6 MB link
— 67_P5_PBMC_S5_L003_I1_001.fastq.gz RNA-Seq 14.9 MB link
— 67_P5_PBMC_S5_L004_I1_001.fastq.gz RNA-Seq 13.6 MB link
— 68_P5_uninfl_S10_L001_I1_001.fastq.gz RNA-Seq 300.0 MB link
— 68_P5_uninfl_S10_L002_I1_001.fastq.gz RNA-Seq 301.7 MB link
— 68_P5_uninfl_S10_L003_I1_001.fastq.gz RNA-Seq 298.5 MB link
— 68_P5_uninfl_S10_L004_I1_001.fastq.gz RNA-Seq 290.6 MB link
— 68_P5_uninfl_S11_L001_I1_001.fastq.gz RNA-Seq 296.5 MB link
— 68_P5_uninfl_S11_L002_I1_001.fastq.gz RNA-Seq 296.8 MB link
— 68_P5_uninfl_S11_L003_I1_001.fastq.gz RNA-Seq 294.2 MB link
— 68_P5_uninfl_S11_L004_I1_001.fastq.gz RNA-Seq 286.4 MB link
— 68_P5_uninfl_S12_L001_I1_001.fastq.gz RNA-Seq 256.0 MB link
— 68_P5_uninfl_S12_L003_I1_001.fastq.gz RNA-Seq 254.8 MB link
— 68_P5_uninfl_S12_L004_I1_001.fastq.gz RNA-Seq 248.1 MB link
— 68_P5_uninfl_S9_L001_I1_001.fastq.gz RNA-Seq 233.7 MB link
— 68_P5_uninfl_S9_L002_I1_001.fastq.gz RNA-Seq 235.6 MB link
— 68_P5_uninfl_S9_L003_I1_001.fastq.gz RNA-Seq 232.9 MB link
— 68_P5_uninfl_S9_L004_I1_001.fastq.gz RNA-Seq 228.3 MB link
— 69_P5_infla_S13_L001_I1_001.fastq.gz RNA-Seq 331.9 MB link
— 69_P5_infla_S13_L002_I1_001.fastq.gz RNA-Seq 330.4 MB link
— 69_P5_infla_S13_L003_I1_001.fastq.gz RNA-Seq 327.5 MB link
— 69_P5_infla_S13_L004_I1_001.fastq.gz RNA-Seq 318.4 MB link
— 69_P5_infla_S14_L001_I1_001.fastq.gz RNA-Seq 390.8 MB link
— 69_P5_infla_S14_L002_I1_001.fastq.gz RNA-Seq 389.5 MB link
— 69_P5_infla_S14_L003_I1_001.fastq.gz RNA-Seq 386.6 MB link
— 69_P5_infla_S14_L004_I1_001.fastq.gz RNA-Seq 376.0 MB link
— 69_P5_infla_S15_L001_I1_001.fastq.gz RNA-Seq 261.8 MB link
— 69_P5_infla_S15_L002_I1_001.fastq.gz RNA-Seq 262.4 MB link
— 69_P5_infla_S15_L003_I1_001.fastq.gz RNA-Seq 259.8 MB link
— 69_P5_infla_S15_L004_I1_001.fastq.gz RNA-Seq 253.9 MB link
— 69_P5_infla_S16_L001_I1_001.fastq.gz RNA-Seq 184.3 MB link
— 69_P5_infla_S16_L002_I1_001.fastq.gz RNA-Seq 185.3 MB link
— 69_P5_infla_S16_L003_I1_001.fastq.gz RNA-Seq 182.9 MB link
— 69_P5_infla_S16_L004_I1_001.fastq.gz RNA-Seq 179.0 MB link
— CD14P_S4_L001_I1_001.fastq.gz RNA-Seq 112.6 KB link
— CD14P_S4_L002_I1_001.fastq.gz RNA-Seq 112.6 KB link
— CD14P_S4_L003_I1_001.fastq.gz RNA-Seq 122.9 KB link
— CD14P_S4_L004_I1_001.fastq.gz RNA-Seq 102.4 KB link
— CD15P_S3_L001_I1_001.fastq.gz RNA-Seq 925.1 MB link
— CD15P_S3_L002_I1_001.fastq.gz RNA-Seq 961.1 MB link
— CD15P_S3_L003_I1_001.fastq.gz RNA-Seq 963.4 MB link
— CD15P_S3_L004_I1_001.fastq.gz RNA-Seq 936.4 MB link
— run230_180_S2_L001_I1_001.fastq.gz RNA-Seq 563.5 MB link
— run230_180_S2_L002_I1_001.fastq.gz RNA-Seq 585.2 MB link
— run230_180_S2_L003_I1_001.fastq.gz RNA-Seq 569.9 MB link
— run230_180_S2_L004_I1_001.fastq.gz RNA-Seq 557.4 MB link
— run230_181_S3_L001_I1_001.fastq.gz RNA-Seq 508.9 MB link
— run230_181_S3_L003_I1_001.fastq.gz RNA-Seq 514.8 MB link
— run230_181_S3_L004_I1_001.fastq.gz RNA-Seq 503.9 MB link
— run230_186_S5_L001_I1_001.fastq.gz RNA-Seq 531.2 MB link
— run230_186_S5_L002_I1_001.fastq.gz RNA-Seq 551.0 MB link
— run230_186_S5_L003_I1_001.fastq.gz RNA-Seq 537.2 MB link
— run230_186_S5_L004_I1_001.fastq.gz RNA-Seq 525.1 MB link
— run230_187_S6_L001_I1_001.fastq.gz RNA-Seq 536.5 MB link
— run230_187_S6_L002_I1_001.fastq.gz RNA-Seq 557.8 MB link
— run230_187_S6_L003_I1_001.fastq.gz RNA-Seq 543.4 MB link
— run230_187_S6_L004_I1_001.fastq.gz RNA-Seq 531.3 MB link
— run231_180_S2_L001_I1_001.fastq.gz RNA-Seq 576.8 MB link
— run231_180_S2_L002_I1_001.fastq.gz RNA-Seq 657.3 MB link
— run231_180_S2_L003_I1_001.fastq.gz RNA-Seq 616.4 MB link
— run231_180_S2_L004_I1_001.fastq.gz RNA-Seq 620.6 MB link
— run231_181_S3_L003_I1_001.fastq.gz RNA-Seq 551.5 MB link
— run231_186_S5_L001_I1_001.fastq.gz RNA-Seq 548.1 MB link
— run231_186_S5_L002_I1_001.fastq.gz RNA-Seq 627.0 MB link
— run231_186_S5_L003_I1_001.fastq.gz RNA-Seq 588.2 MB link
— run231_186_S5_L004_I1_001.fastq.gz RNA-Seq 593.2 MB link
— run231_187_S6_L001_I1_001.fastq.gz RNA-Seq 549.9 MB link
— run231_187_S6_L002_I1_001.fastq.gz RNA-Seq 628.2 MB link
— run231_187_S6_L003_I1_001.fastq.gz RNA-Seq 589.8 MB link
— run231_187_S6_L004_I1_001.fastq.gz RNA-Seq 594.0 MB link
— SRR9827648.sralite RNA-Seq 257.9 MB link
— SRR9827674.sralite RNA-Seq 528.2 MB link
— SRR9827677.sralite RNA-Seq 515.2 MB link
— SRR9827678.sralite RNA-Seq 588.1 MB link
— SRR9827680 RNA-Seq 555.6 MB link
— SRR9827740.sralite RNA-Seq 1.1 GB link
— SRR9827741.sralite RNA-Seq 1.1 GB link
— SRR9827742 RNA-Seq 1.1 GB link
— SRR9827747.sralite RNA-Seq 998.4 MB link
— SRR9827749.sralite RNA-Seq 1005.6 MB link
— SRR9827750.sralite RNA-Seq 987.6 MB link