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RNA binding protein DDX5 restricts RORγt<sup>+</sup> T<sub>reg</sub> suppressor function to promote intestine inflammation.

Science advances · 2023 · Vol. 9 (5) · pp. eadd6165

Abstract

Retinoid-related orphan receptor (RAR) gamma (RORγt)-expressing regulatory T cells (RORγt<sup>+</sup> T<sub>regs</sub>) play pivotal roles in preventing T cell hyperactivation and maintaining tissue homeostasis, in part by secreting the anti-inflammation cytokine interleukin-10 (IL-10). Here, we report that hypoxia-induced factor 1α (HIF1α) is the master transcription factor for <i>Il10</i> in RORγt<sup>+</sup> T<sub>regs</sub>. This critical anti-inflammatory pathway is negatively regulated by an RNA binding protein DEAD box helicase 5 (DDX5). As a transcriptional corepressor, DDX5 restricts the expression of HIF1α and its downstream target gene <i>Il10</i> in RORγt<sup>+</sup> T<sub>regs</sub>. T cell-specific <i>Ddx5</i> knockout (DDX5<sup>ΔT</sup>) mice have augmented RORγt<sup>+</sup> T<sub>reg</sub> suppressor activities and are better protected from intestinal inflammation. Genetic ablation or pharmacologic inhibition of HIF1α restores enteropathy susceptibility in DDX5<sup>ΔT</sup> mice. The DDX5-HIF1α-IL-10 pathway is conserved in mice and humans. These findings reveal potential therapeutic targets for intestinal inflammatory diseases.

Publication Types

["Journal Article"]

Keywords

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MeSH Terms

["Humans", "Mice", "Animals", "Interleukin-10", "Nuclear Receptor Subfamily 1, Group F, Member 3", "Gene Expression Regulation", "Transcription Factors", "RNA-Binding Proteins", "DEAD-box RNA Helicases", "Protein Binding"]

Funding

S10 OD026929 NIH HHS (United States)
R01 HG004659 NHGRI NIH HHS (United States)
P30 CA023100 NCI NIH HHS (United States)
U41 HG009889 NHGRI NIH HHS (United States)
P30 CA014195 NCI NIH HHS (United States)
R01 AI151123 NIAID NIH HHS (United States)
R21 AI178938 NIAID NIH HHS (United States)
R00 DK110534 NIDDK NIH HHS (United States)
R01 AI107027 NIAID NIH HHS (United States)
R21 AI154919 NIAID NIH HHS (United States)
R01 GM124494 NIGMS NIH HHS (United States)

Linked Datasets (1)

GSE157259 GSE via ncbi_elink
GEO

DDX5 RNA interactome in cultured T cells

Mus musculus
4 data files
FileTypeSize
COLLAB16_DDX5-R1-input_S115_L008_R1_001.fastq.gz RIP-Seq 901.7 MB
COLLAB17_DDX5-R2-input_S116_L008_R1_001.fastq.gz RIP-Seq 790.7 MB
COLLAB18_DDX5-R1-IP_S117_L008_R1_001.fastq.gz RIP-Seq 1.2 GB
COLLAB19_DDX5-R2-IP_S118_L008_R1_001.fastq.gz RIP-Seq 912.7 MB

Potentially Related Datasets (3)

These accessions were text-mined from the PMC full text. They may be referenced for comparison, cited from other studies, or otherwise mentioned without being primary data for this paper.

Single-cell analysis of Crohn’s disease lesions identifies a pathogenic cellular module associated with resistance to anti-TNF therapy

Transcriptional Survey of Ileal-Anal Pouch Immune Cells from Ulcerative Colitis

DDX5 RNA interactome in cultured T cells

Analysis Pipelines (3)

geo_data_processing GSE134809
eCLIP geo_data_processing GSE157259
scRNA-seq geo_data_processing GSE162335