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GSE14333

GSE GEO
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Expression data from 290 primary colorectal cancers

Organism: Homo sapiens
Platform: GPL570
Samples: 290
Experiment Types:
Expression profiling by array
Submitted: Jan 08 2009
Last Updated: Mar 25 2019
Status: Public on Jan 08 2010
Contact: Oliver,,Sieber (Ludwig Institute for Cancer Research)

Relations

BioProject: https://www.ncbi.nlm.nih.gov/bioproject/PRJNA111511

Summary

Samples were taken from colorectal cancers in surgically resected specimens in 290 colorectal cancer patients. The expression profiles were determined using Affymetrix Human Genome U133Plus 2.0 arrays. The training set of our prognosis classifier included the stage A and D samples. Validation used our stage B and C samples. Keywords: Expression profiling by array

Overall Design

mRNA from 290 primary colorectal tumour samples were extracted and hybridized to HG-U133Plus 2.0 expression arrays. The MAS5.0 procedure was used to make calls of expression. Data from the Stage A and D samples were quantile normalized and used with microarray data from the expO set to build a classifier. The Stage B and C samples were were quantile normalized with reference to a training set prior to application of our prognosis classifier.

Analysis (2 steps)

View Data Processing
Processing steps for GSE14333
  1. Use the simpleaffy package in R/Bioconductor to calculate MAS5.0 calls.
  2. These values were subsequently normalized using quantile normalization.

Supplementary Files (1)

GSE14333_RAW.tar Download
GEO Samples (290)
GSM358341 GSM358342 GSM358343 GSM358344 GSM358345 GSM358346 GSM358347 GSM358348 GSM358349 GSM358350 GSM358351 GSM358352 GSM358353 GSM358354 GSM358355 GSM358356 GSM358357 GSM358358 GSM358359 GSM358360 GSM358361 GSM358362 GSM358363 GSM358364 GSM358365 GSM358366 GSM358367 GSM358368 GSM358369 GSM358370 GSM358371 GSM358372 GSM358373 GSM358374 GSM358375 GSM358376 GSM358377 GSM358378 GSM358379 GSM358380 GSM358381 GSM358382 GSM358383 GSM358384 GSM358385 GSM358386 GSM358387 GSM358388 GSM358389 GSM358390 GSM358391 GSM358392 GSM358393 GSM358394 GSM358395 GSM358396 GSM358397 GSM358398 GSM358399 GSM358400 GSM358401 GSM358402 GSM358403 GSM358404 GSM358405 GSM358406 GSM358407 GSM358408 GSM358409 GSM358410 GSM358411 GSM358412 GSM358413 GSM358414 GSM358415 GSM358416 GSM358417 GSM358418 GSM358419 GSM358420 GSM358421 GSM358422 GSM358423 GSM358424 GSM358425 GSM358426 GSM358427 GSM358428 GSM358429 GSM358430 GSM358431 GSM358432 GSM358433 GSM358434 GSM358435 GSM358436 GSM358437 GSM358438 GSM358439 GSM358440 GSM358441 GSM358442 GSM358443 GSM358444 GSM358445 GSM358446 GSM358447 GSM358448 GSM358449 GSM358450 GSM358451 GSM358452 GSM358453 GSM358454 GSM358455 GSM358456 GSM358457 GSM358458 GSM358459 GSM358460 GSM358461 GSM358462 GSM358463 GSM358464 GSM358465 GSM358466 GSM358467 GSM358468 GSM358469 GSM358470 GSM358471 GSM358472 GSM358473 GSM358474 GSM358475 GSM358476 GSM358477 GSM358478 GSM358479 GSM358480 GSM358481 GSM358482 GSM358483 GSM358484 GSM358485 GSM358486 GSM358487 GSM358488 GSM358489 GSM358490 GSM358491 GSM358492 GSM358493 GSM358494 GSM358495 GSM358496 GSM358497 GSM358498 GSM358499 GSM358500 GSM358501 GSM358502 GSM358503 GSM358504 GSM358505 GSM358506 GSM358507 GSM358508 GSM358509 GSM358510 GSM358511 GSM358512 GSM358513 GSM358514 GSM358515 GSM358516 GSM358517 GSM358518 GSM358519 GSM358520 GSM358521 GSM358522 GSM358523 GSM358524 GSM358525 GSM358526 GSM358527 GSM358528 GSM358529 GSM358530 GSM358531 GSM358532 GSM358533 GSM358534 GSM358535 GSM358536 GSM358537 GSM358538 GSM358539 GSM358540 GSM358541 GSM358542 GSM358543 GSM358544 GSM358545 GSM358546 GSM358547 GSM358548 GSM358549 GSM358550 GSM358551 GSM358552 GSM358553 GSM358554 GSM358555 GSM358556 GSM358557 GSM358558 GSM358559 GSM358560 GSM358561 GSM358562 GSM358563 GSM358564 GSM358565 GSM358566 GSM358567 GSM358568 GSM358569 GSM358570 GSM358571 GSM358572 GSM358573 GSM358574 GSM358575 GSM358576 GSM358577 GSM358578 GSM358579 GSM358580 GSM358581 GSM358582 GSM358583 GSM358584 GSM358585 GSM358586 GSM358587 GSM358588 GSM358589 GSM358590 GSM358591 GSM358592 GSM358593 GSM358594 GSM358595 GSM358596 GSM358597 GSM358598 GSM358599 GSM358600 GSM358601 GSM358602 GSM358603 GSM358604 GSM358605 GSM358606 GSM358607 GSM358608 GSM358609 GSM358610 GSM358611 GSM358612 GSM358613 GSM358614 GSM358615 GSM358616 GSM358617 GSM358618 GSM358619 GSM358620 GSM358621 GSM358622 GSM358623 GSM358624 GSM358625 GSM358626 GSM358627 GSM358628 GSM358629 GSM358630

Dataset Citations (1)

PubMed citation (PMID 19996206)

Linked Publications (1)

DDX5 promotes oncogene C3 and FABP1 expressions and drives intestinal inflammation and tumorigenesis.
Life science alliance · 2020