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GSE33113

GSE GEO
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AMC colon cancer AJCCII

Organism: Homo sapiens
Platform: GPL570
Samples: 96
Experiment Types:
Expression profiling by array
Submitted: Oct 20 2011
Last Updated: Mar 25 2019
Status: Public on Nov 05 2011
Contact: Richard,,Volckmann (msterdam UMC and University of Amsterdam)

Relations

SubSeries of: GSE33114 BioProject: https://www.ncbi.nlm.nih.gov/bioproject/PRJNA156585

Summary

Profiling project of CRC patient material collected in the Academic Medical Center (AMC) in Amsterdam, The Netherlands. We focused on a set of 90 AJCC stage II patients that underwent intentionally curative surgery in the years 1997-2006 (AMC-AJCCII-90). Extensive medical records are kept from these patients and long-term clinical follow-up is available for the large majority. Both paraffin-embedded as well as fresh frozen tissue is available from all these patients for analysis.

Overall Design

Primary tumor resections from 90 AJCC stage II CRC patients, and matching normal colon tissue from 6 of these patients, are included in the study.

Analysis (1 step)

View Data Processing
Processing steps for GSE33113
  1. Expression data (cel files) were normalized with the MAS5.0 algorithm (target signal = 100) using GCOS software (Affymetrix)

Supplementary Files (1)

GSE33113_RAW.tar Download
GEO Samples (96)
GSM820048 GSM820049 GSM820050 GSM820051 GSM820052 GSM820053 GSM820054 GSM820055 GSM820056 GSM820057 GSM820058 GSM820059 GSM820060 GSM820061 GSM820062 GSM820063 GSM820064 GSM820065 GSM820066 GSM820067 GSM820068 GSM820069 GSM820070 GSM820071 GSM820072 GSM820073 GSM820074 GSM820075 GSM820076 GSM820077 GSM820078 GSM820079 GSM820080 GSM820081 GSM820082 GSM820083 GSM820084 GSM820085 GSM820086 GSM820087 GSM820088 GSM820089 GSM820090 GSM820091 GSM820092 GSM820093 GSM820094 GSM820095 GSM820096 GSM820097 GSM820098 GSM820099 GSM820100 GSM820101 GSM820102 GSM820103 GSM820104 GSM820105 GSM820106 GSM820107 GSM820108 GSM820109 GSM820110 GSM820111 GSM820112 GSM820113 GSM820114 GSM820115 GSM820116 GSM820117 GSM820118 GSM820119 GSM820120 GSM820121 GSM820122 GSM820123 GSM820124 GSM820125 GSM820126 GSM820127 GSM820128 GSM820129 GSM820130 GSM820131 GSM820132 GSM820133 GSM820134 GSM820135 GSM820136 GSM820137 GSM1100477 GSM1100478 GSM1100479 GSM1100480 GSM1100481 GSM1100482

Dataset Citations (2)

PubMed citation (PMID 22056143)
PubMed citation (PMID 22496204)

Linked Publications (1)

DDX5 promotes oncogene C3 and FABP1 expressions and drives intestinal inflammation and tumorigenesis.
Life science alliance · 2020