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GSE73211

GSE GEO
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Comparing isogenic pairs of hESC and hiPSC lines reveals genetic background and reprogramming method as primary sources of transcriptional variation

Organism: Homo sapiens
Platform: GPL11154
Samples: 74
Experiment Types:
Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing
Submitted: Sep 18 2015
Last Updated: Aug 07 2019
Status: Public on Oct 26 2015
Contact: Soohyun,,Lee (Harvard Medical School)

Relations

BioProject: https://www.ncbi.nlm.nih.gov/bioproject/PRJNA296379 SRA: https://www.ncbi.nlm.nih.gov/sra?term=SRP063867

Summary

The equivalency of human induced pluripotent stem cells (hiPSCs) with human embryonic stem cells (hESCs) remains controversial. Here, we devised a strategy to assess the contribution of clonal growth, reprogramming method and genetic background to transcriptional patterns in hESCs and hiPSCs. Surprisingly, transcriptional variation originating from two different genetic backgrounds was dominant over variation due to the reprogramming method or cell type of origin of pluripotent cell lines. Moreover, the few differences we detected between isogenic hESCs and hiPSCs neither predicted functional outcome, nor distinguished an independently derived, larger set of unmatched hESC/hiPSC lines. We conclude that hESCs and hiPSCs are transcriptionally and functionally highly similar and cannot be distinguished by a consistent gene expression signature. Our data further imply that genetic background variation is a major confounding factor for transcriptional comparisons of pluripotent cell lines, explaining some of the previously observed expression differences between unmatched hESCs and hiPSCs.

Overall Design

Expression profiling of human embryonic stem cells (ESCs), induced pluripotent stem cells (iPSCs) and fibroblasts, mostly in triplicates.

Analysis (2 steps)

View Data Processing
Processing steps for GSE73211
  1. Sequence reads were aligned to GRCh37.67 transcriptome using bowtie 0.12.7.
  2. TPM and readcount values were obtained using EMSAR v1.0

Supplementary Files (5)

GSE73211_RAW.tar Download
GSE73211_isogenic.TPM.txt.gz Download
GSE73211_isogenic.gReadcount.txt.gz Download
GSE73211_nonisogenic.TPM.txt.gz Download
GSE73211_nonisogenic.gReadcount.txt.gz Download
GEO Samples (74)
GSM1888619 GSM1888620 GSM1888621 GSM1888622 GSM1888623 GSM1888624 GSM1888625 GSM1888626 GSM1888627 GSM1888628 GSM1888629 GSM1888630 GSM1888631 GSM1888632 GSM1888633 GSM1888634 GSM1888635 GSM1888636 GSM1888637 GSM1888638 GSM1888639 GSM1888640 GSM1888641 GSM1888642 GSM1888643 GSM1888644 GSM1888645 GSM1888646 GSM1888647 GSM1888648 GSM1888649 GSM1888650 GSM1888651 GSM1888652 GSM1888653 GSM1888654 GSM1888655 GSM1888656 GSM1888657 GSM1888658 GSM1888659 GSM1888660 GSM1888661 GSM1888662 GSM1888663 GSM1888664 GSM1888665 GSM1888666 GSM1888667 GSM1888668 GSM1888669 GSM1888670 GSM1888671 GSM1888672 GSM1888673 GSM1888674 GSM1888675 GSM1888676 GSM1888677 GSM1888678 GSM1888679 GSM1888680 GSM1888681 GSM4007715 GSM4007716 GSM4007717 GSM4007718 GSM4007719 GSM4007720 GSM4007721 GSM4007722 GSM4007723 GSM4007724 GSM4007725

Dataset Citations (1)

PubMed citation (PMID 26501951)

SRA Experiments (74) and Runs (95)

Total: 284442 MB
SRX1261729 SRP063867 RNA-Seq PAIRED
GSM1888619: hiPSC11 Fibroblast; Homo sapiens; RNA-Seq
Sample: SRS1074358
BioProject: PRJNA296379
BioSample: SAMN04096433
Platform: ILLUMINA
Instrument: Illumina HiSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: Fibroblast
data set: isogenic
cell type: Fibroblast
Original files (1)
Fibroblast
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR2453299 21321622 4306967644 2522.17 Sample_hJ-11_iPS_Fibroblast.R1.3VFXHS1_243_D0RC7ACXX_1.fastq.gz, Samp… SRA
SRR2453300 31399742 6342747884 3679.24 Sample_hJ-11_iPS_Fibroblast.R1.3VFXHS1_264_D0T8EACXX_2.fastq.gz, Samp… SRA
SRX1261730 SRP063867 RNA-Seq PAIRED
GSM1888620: hiPSC11; Homo sapiens; RNA-Seq
Sample: SRS1074357
BioProject: PRJNA296379
BioSample: SAMN04096434
Platform: ILLUMINA
Instrument: Illumina HiSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: iPSC
data set: isogenic
cell type: iPSC
Original files (1)
iPSC
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2453301 61215922 12365616244 7550.57 Sample_hJ-11_iPS_p38.R1.fastq.gz, Sample_hJ-11_iPS_p38.R2.fastq.gz, S… SRA
SRX1261731 SRP063867 RNA-Seq PAIRED
GSM1888621: hiPSC1 Fibroblast; Homo sapiens; RNA-Seq
Sample: SRS1074356
BioProject: PRJNA296379
BioSample: SAMN04096435
Platform: ILLUMINA
Instrument: Illumina HiSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: Fibroblast
data set: isogenic
cell type: Fibroblast
Original files (1)
Fibroblast
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2453302 65203039 13171013878 8261.24 Sample_hJ-1_iPS_Fibroblast.R1.fastq.gz, Sample_hJ-1_iPS_Fibroblast.R2… SRA
SRX1261732 SRP063867 RNA-Seq PAIRED
GSM1888622: hiPSC1; Homo sapiens; RNA-Seq
Sample: SRS1074355
BioProject: PRJNA296379
BioSample: SAMN04096436
Platform: ILLUMINA
Instrument: Illumina HiSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: iPSC
data set: isogenic
cell type: iPSC
Original files (1)
iPSC
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR2453303 39018108 7881657816 4669.61 Sample_hJ-1_iPS_p38.R1.3VFXHS1_243_D0RC7ACXX_7.fastq.gz, Sample_hJ-1_… SRA
SRR2453304 4552027 919509454 535.0 Sample_hJ-1_iPS_p38.R1.3VFXHS1_264_D0T8EACXX_2.fastq.gz, Sample_hJ-1_… SRA
SRX1261733 SRP063867 RNA-Seq PAIRED
GSM1888623: hiPSC2 Fibroblast; Homo sapiens; RNA-Seq
Sample: SRS1074354
BioProject: PRJNA296379
BioSample: SAMN04096437
Platform: ILLUMINA
Instrument: Illumina HiSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: Fibroblast
data set: isogenic
cell type: Fibroblast
Original files (1)
Fibroblast
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2453305 56453290 11403564580 7111.16 Sample_hJ-2_iPS_Fibroblast.R1.fastq.gz, Sample_hJ-2_iPS_Fibroblast.R2… SRA
SRX1261734 SRP063867 RNA-Seq PAIRED
GSM1888624: hiPSC2; Homo sapiens; RNA-Seq
Sample: SRS1074353
BioProject: PRJNA296379
BioSample: SAMN04096438
Platform: ILLUMINA
Instrument: Illumina HiSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: iPSC
data set: isogenic
cell type: iPSC
Original files (1)
iPSC
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2453306 44499332 8988865064 5303.84 Sample_hJ-2_iPS_p38.R1.fastq.gz, Sample_hJ-2_iPS_p38.R2.fastq.gz, SRR… SRA
SRX1261735 SRP063867 RNA-Seq PAIRED
GSM1888625: hiPSC3 Fibroblast; Homo sapiens; RNA-Seq
Sample: SRS1074352
BioProject: PRJNA296379
BioSample: SAMN04096439
Platform: ILLUMINA
Instrument: Illumina HiSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: Fibroblast
data set: isogenic
cell type: Fibroblast
Original files (1)
Fibroblast
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2453307 53095898 10725371396 6646.15 Sample_hJ-3_iPS_Fibroblast.R1.fastq.gz, Sample_hJ-3_iPS_Fibroblast.R2… SRA
SRX1261736 SRP063867 RNA-Seq PAIRED
GSM1888626: hiPSC3; Homo sapiens; RNA-Seq
Sample: SRS1074351
BioProject: PRJNA296379
BioSample: SAMN04096440
Platform: ILLUMINA
Instrument: Illumina HiSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: iPSC
data set: isogenic
cell type: iPSC
Original files (1)
iPSC
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2453308 54697510 11048897020 6502.08 Sample_hJ-3_iPS_p38.R1.fastq.gz, Sample_hJ-3_iPS_p38.R2.fastq.gz, SRR… SRA
SRX1261737 SRP063867 RNA-Seq PAIRED
GSM1888627: hiPSC8 Fibroblast; Homo sapiens; RNA-Seq
Sample: SRS1074350
BioProject: PRJNA296379
BioSample: SAMN04096441
Platform: ILLUMINA
Instrument: Illumina HiSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: Fibroblast
data set: isogenic
cell type: Fibroblast
Original files (1)
Fibroblast
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2453309 51386006 10379973212 6055.74 Sample_hJ-8_iPS_Fibroblast.R1.fastq.gz, Sample_hJ-8_iPS_Fibroblast.R2… SRA
SRX1261738 SRP063867 RNA-Seq PAIRED
GSM1888628: hiPSC8; Homo sapiens; RNA-Seq
Sample: SRS1074349
BioProject: PRJNA296379
BioSample: SAMN04096442
Platform: ILLUMINA
Instrument: Illumina HiSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: iPSC
data set: isogenic
cell type: iPSC
Original files (1)
iPSC
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2453310 80583068 16277779736 9914.6 Sample_hJ-8_iPS_p39.R1.fastq.gz, Sample_hJ-8_iPS_p39.R2.fastq.gz, SRR… SRA
SRX1261739 SRP063867 RNA-Seq PAIRED
GSM1888629: hiPSC9 Fibroblast; Homo sapiens; RNA-Seq
Sample: SRS1074348
BioProject: PRJNA296379
BioSample: SAMN04096443
Platform: ILLUMINA
Instrument: Illumina HiSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: Fibroblast
data set: isogenic
cell type: Fibroblast
Original files (1)
Fibroblast
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2453311 59400841 11998969882 7010.41 Sample_hJ-9_iPS_Fibroblast.R1.fastq.gz, Sample_hJ-9_iPS_Fibroblast.R2… SRA
SRX1261740 SRP063867 RNA-Seq PAIRED
GSM1888630: hiPSC9; Homo sapiens; RNA-Seq
Sample: SRS1074347
BioProject: PRJNA296379
BioSample: SAMN04096444
Platform: ILLUMINA
Instrument: Illumina HiSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: iPSC
data set: isogenic
cell type: iPSC
Original files (1)
iPSC
Runs (3)
Run Spots Bases Size (MB) Files Link
SRR2453312 21390342 4320849084 2644.57 Sample_hJ-9_iPS_p38.R1.3VFXHS1_257_D0RBJACXX_2.fastq.gz, Sample_hJ-9_… SRA
SRR2453313 515486 104128172 57.82 Sample_hJ-9_iPS_p38.R1.3VFXHS1_257_D0RBJACXX_3.fastq.gz, Sample_hJ-9_… SRA
SRR2453314 15415896 3114010992 1798.49 Sample_hJ-9_iPS_p38.R1.3VFXHS1_264_D0T8EACXX_2.fastq.gz, Sample_hJ-9_… SRA
SRX1261741 SRP063867 RNA-Seq PAIRED
GSM1888631: hESC2.1; Homo sapiens; RNA-Seq
Sample: SRS1074346
BioProject: PRJNA296379
BioSample: SAMN04096445
Platform: ILLUMINA
Instrument: Illumina HiSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: ESC
data set: isogenic
cell type: ESC
Original files (1)
ESC
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2453315 52067083 10517550766 6434.08 Sample_HUES_2-1-p41plus8.R1.fastq.gz, Sample_HUES_2-1-p41plus8.R2.fas… SRA
SRX1261742 SRP063867 RNA-Seq PAIRED
GSM1888632: hESC2.2; Homo sapiens; RNA-Seq
Sample: SRS1074345
BioProject: PRJNA296379
BioSample: SAMN04096446
Platform: ILLUMINA
Instrument: Illumina HiSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: ESC
data set: isogenic
cell type: ESC
Original files (1)
ESC
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2453316 50447610 10190417220 6221.4 Sample_HUES_2-2-p41plus8.R1.fastq.gz, Sample_HUES_2-2-p41plus8.R2.fas… SRA
SRX1261743 SRP063867 RNA-Seq PAIRED
GSM1888633: hESC2.3; Homo sapiens; RNA-Seq
Sample: SRS1074344
BioProject: PRJNA296379
BioSample: SAMN04096447
Platform: ILLUMINA
Instrument: Illumina HiSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: ESC
data set: isogenic
cell type: ESC
Original files (1)
ESC
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2453317 53795798 10866751196 6631.81 Sample_HUES_2-3-p41plus8.R1.fastq.gz, Sample_HUES_2-3-p41plus8.R2.fas… SRA
SRX1261744 SRP063867 RNA-Seq PAIRED
GSM1888634: hESC2.6 Fib; Homo sapiens; RNA-Seq
Sample: SRS1074343
BioProject: PRJNA296379
BioSample: SAMN04096448
Platform: ILLUMINA
Instrument: Illumina HiSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: Fibroblast
data set: isogenic
cell type: Fibroblast
Original files (1)
Fibroblast
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2453318 51462888 10395503376 6019.12 Sample_HUES_2-6_Fibroblast.R1.fastq.gz, Sample_HUES_2-6_Fibroblast.R2… SRA
SRX1261745 SRP063867 RNA-Seq PAIRED
GSM1888635: hESC2.6 G5 Fib; Homo sapiens; RNA-Seq
Sample: SRS1074342
BioProject: PRJNA296379
BioSample: SAMN04096449
Platform: ILLUMINA
Instrument: Illumina HiSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: Fibroblast
data set: isogenic
cell type: Fibroblast
Original files (1)
Fibroblast
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2453319 42742430 8633970860 5098.35 Sample_HUES_2-6_GFP_05_Fibroblast.R1.fastq.gz, Sample_HUES_2-6_GFP_05… SRA
SRX1261746 SRP063867 RNA-Seq PAIRED
GSM1888636: hESC2.6 G12 Fib; Homo sapiens; RNA-Seq
Sample: SRS1074341
BioProject: PRJNA296379
BioSample: SAMN04096450
Platform: ILLUMINA
Instrument: Illumina HiSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: Fibroblast
data set: isogenic
cell type: Fibroblast
Original files (1)
Fibroblast
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2453320 48242657 9745016714 5739.58 Sample_HUES_2-6_GFP_12_Fibroblast.R1.fastq.gz, Sample_HUES_2-6_GFP_12… SRA
SRX1261747 SRP063867 RNA-Seq PAIRED
GSM1888637: hESC2.6 G12; Homo sapiens; RNA-Seq
Sample: SRS1074340
BioProject: PRJNA296379
BioSample: SAMN04096451
Platform: ILLUMINA
Instrument: Illumina HiSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: ESC
data set: isogenic
cell type: ESC
Original files (1)
ESC
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR2453321 36402438 7353292476 4082.71 Sample_HUES_2-6_GFP-12_p32.R1.3VFXHS1_257_D0RBJACXX_3.fastq.gz, Sampl… SRA
SRR2453322 8528323 1722721246 1002.88 Sample_HUES_2-6_GFP-12_p32.R1.3VFXHS1_264_D0T8EACXX_2.fastq.gz, Sampl… SRA
SRX1261748 SRP063867 RNA-Seq PAIRED
GSM1888638: hESC2.6 G13 Fib; Homo sapiens; RNA-Seq
Sample: SRS1074339
BioProject: PRJNA296379
BioSample: SAMN04096452
Platform: ILLUMINA
Instrument: Illumina HiSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: Fibroblast
data set: isogenic
cell type: Fibroblast
Original files (1)
Fibroblast
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2453323 43706748 8828763096 5204.15 Sample_HUES_2-6_GFP_13_Fibroblast.R1.fastq.gz, Sample_HUES_2-6_GFP_13… SRA
SRX1261749 SRP063867 RNA-Seq PAIRED
GSM1888639: hESC2.6 G13; Homo sapiens; RNA-Seq
Sample: SRS1074338
BioProject: PRJNA296379
BioSample: SAMN04096453
Platform: ILLUMINA
Instrument: Illumina HiSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: ESC
data set: isogenic
cell type: ESC
Original files (1)
ESC
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR2453324 24154051 4879118302 2690.28 Sample_HUES_2-6_GFP-13_p32.R1.3VFXHS1_257_D0RBJACXX_3.fastq.gz, Sampl… SRA
SRR2453325 20977914 4237538628 2444.74 Sample_HUES_2-6_GFP-13_p32.R1.3VFXHS1_264_D0T8EACXX_2.fastq.gz, Sampl… SRA
SRX1261750 SRP063867 RNA-Seq PAIRED
GSM1888640: hESC2.6 G5; Homo sapiens; RNA-Seq
Sample: SRS1074404
BioProject: PRJNA296379
BioSample: SAMN04096454
Platform: ILLUMINA
Instrument: Illumina HiSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: ESC
data set: isogenic
cell type: ESC
Original files (1)
ESC
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR2453326 15096001 3049392202 1700.1 Sample_HUES_2-6_GFP-5_p32.R1.3VFXHS1_257_D0RBJACXX_3.fastq.gz, Sample… SRA
SRR2453327 25055928 5061297456 2950.3 Sample_HUES_2-6_GFP-5_p32.R1.3VFXHS1_264_D0T8EACXX_2.fastq.gz, Sample… SRA
SRX1261751 SRP063867 RNA-Seq PAIRED
GSM1888641: hESC3.1; Homo sapiens; RNA-Seq
Sample: SRS1074403
BioProject: PRJNA296379
BioSample: SAMN04096455
Platform: ILLUMINA
Instrument: Illumina HiSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: ESC
data set: isogenic
cell type: ESC
Original files (1)
ESC
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2453328 46999458 9493890516 5631.03 Sample_HUES_3-1_p51plus7.R1.fastq.gz, Sample_HUES_3-1_p51plus7.R2.fas… SRA
SRX1261752 SRP063867 RNA-Seq PAIRED
GSM1888642: hESC3.2; Homo sapiens; RNA-Seq
Sample: SRS1074402
BioProject: PRJNA296379
BioSample: SAMN04096456
Platform: ILLUMINA
Instrument: Illumina HiSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: ESC
data set: isogenic
cell type: ESC
Original files (1)
ESC
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR2453329 33082247 6682613894 3966.73 Sample_HUES_3-2_p51plus7.R1.3VFXHS1_257_D0RBJACXX_7.fastq.gz, Sample_… SRA
SRR2453330 8444834 1705856468 970.7 Sample_HUES_3-2_p51plus7.R1.3VFXHS1_264_D0T8EACXX_1.fastq.gz, Sample_… SRA
SRX1261753 SRP063867 RNA-Seq PAIRED
GSM1888643: hESC3.3; Homo sapiens; RNA-Seq
Sample: SRS1074401
BioProject: PRJNA296379
BioSample: SAMN04096459
Platform: ILLUMINA
Instrument: Illumina HiSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: ESC
data set: isogenic
cell type: ESC
Original files (1)
ESC
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2453331 56673489 11448044778 6784.28 Sample_HUES_3-3_p51plus7.R1.fastq.gz, Sample_HUES_3-3_p51plus7.R2.fas… SRA
SRX1261754 SRP063867 RNA-Seq PAIRED
GSM1888644: hESC3.6 Fib; Homo sapiens; RNA-Seq
Sample: SRS1074399
BioProject: PRJNA296379
BioSample: SAMN04096460
Platform: ILLUMINA
Instrument: Illumina HiSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: Fibroblast
data set: isogenic
cell type: Fibroblast
Original files (1)
Fibroblast
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR2453332 31546699 6372433198 3708.35 Sample_HUES_3-6_Fibroblast.R2.3VFXHS1_243_D0RC7ACXX_6.fastq.gz, SRR24… SRA
SRR2453333 12654190 2556146380 1490.26 Sample_HUES_3-6_Fibroblast.R1.3VFXHS1_264_D0T8EACXX_2.fastq.gz, Sampl… SRA
SRX1261755 SRP063867 RNA-Seq PAIRED
GSM1888645: hESC3.6 G2 Fib; Homo sapiens; RNA-Seq
Sample: SRS1074398
BioProject: PRJNA296379
BioSample: SAMN04096461
Platform: ILLUMINA
Instrument: Illumina HiSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: Fibroblast
data set: isogenic
cell type: Fibroblast
Original files (1)
Fibroblast
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2453334 41558234 8394763268 5082.17 Sample_HUES_3-6_GFP_02_Fibroblast.R1.fastq.gz, SRR2453334, SRR2453334… SRA
SRX1261756 SRP063867 RNA-Seq PAIRED
GSM1888646: hESC3.6 G3 Fib; Homo sapiens; RNA-Seq
Sample: SRS1074397
BioProject: PRJNA296379
BioSample: SAMN04096462
Platform: ILLUMINA
Instrument: Illumina HiSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: Fibroblast
data set: isogenic
cell type: Fibroblast
Original files (1)
Fibroblast
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2453335 33806949 6829003698 4107.05 Sample_HUES_3-6_GFP_03_Fibroblast.R2.fastq.gz, SRR2453335.sralite, SR… SRA
SRX1261757 SRP063867 RNA-Seq PAIRED
GSM1888647: hESC3.6 G15 Fib; Homo sapiens; RNA-Seq
Sample: SRS1074396
BioProject: PRJNA296379
BioSample: SAMN04096403
Platform: ILLUMINA
Instrument: Illumina HiSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: Fibroblast
data set: isogenic
cell type: Fibroblast
Original files (1)
Fibroblast
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2453336 79175419 15993434638 9674.74 Sample_HUES_3-6_GFP_15_Fibroblast.R1.fastq.gz, SRR2453336, SRR2453336… SRA
SRX1261758 SRP063867 RNA-Seq PAIRED
GSM1888648: hESC3.6 G15; Homo sapiens; RNA-Seq
Sample: SRS1074395
BioProject: PRJNA296379
BioSample: SAMN04096404
Platform: ILLUMINA
Instrument: Illumina HiSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: ESC
data set: isogenic
cell type: ESC
Original files (1)
ESC
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR2453337 26752665 5404038330 3169.05 SRR2453337.sralite, SRR2453337, Sample_HUES_3-6_GFP-15_p32.R2.3VFXHS1… SRA
SRR2453338 11186228 2259618056 1282.66 Sample_HUES_3-6_GFP-15_p32.R1.3VFXHS1_264_D0T8EACXX_1.fastq.gz, Sampl… SRA
SRX1261759 SRP063867 RNA-Seq PAIRED
GSM1888649: hESC3.6 G2; Homo sapiens; RNA-Seq
Sample: SRS1074394
BioProject: PRJNA296379
BioSample: SAMN04096457
Platform: ILLUMINA
Instrument: Illumina HiSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: ESC
data set: isogenic
cell type: ESC
Original files (1)
ESC
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2453339 49496090 9998210180 5858.18 Sample_HUES_3-6_GFP-2_p32.R1.fastq.gz, SRR2453339, SRR2453339.sralite… SRA
SRX1261760 SRP063867 RNA-Seq PAIRED
GSM1888650: hESC3.6 G3; Homo sapiens; RNA-Seq
Sample: SRS1074393
BioProject: PRJNA296379
BioSample: SAMN04096458
Platform: ILLUMINA
Instrument: Illumina HiSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: ESC
data set: isogenic
cell type: ESC
Original files (1)
ESC
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2453340 50572302 10215605004 5987.44 Sample_HUES_3-6_GFP-3_p32.R1.fastq.gz, Sample_HUES_3-6_GFP-3_p32.R2.f… SRA
SRX1261761 SRP063867 RNA-Seq PAIRED
GSM1888651: Human_Dermal_Fibroblast; Homo sapiens; RNA-Seq
Sample: SRS1074392
BioProject: PRJNA296379
BioSample: SAMN04096405
Platform: ILLUMINA
Instrument: Illumina HiSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: Fibroblast
data set: isogenic
cell type: Fibroblast
Original files (1)
Fibroblast
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2453341 39655519 8010414838 4640.63 SRR2453341, SRR2453341.sralite, Sample_Human_Dermal_Fibroblast.R2.fas… SRA
SRX1261762 SRP063867 RNA-Seq PAIRED
GSM1888652: HUES44; Homo sapiens; RNA-Seq
Sample: SRS1074400
BioProject: PRJNA296379
BioSample: SAMN04096406
Platform: ILLUMINA
Instrument: Illumina HiSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: ESC
data set: nonisogenic
cell type: ESC
Original files (1)
ESC
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2453342 26872067 5428157534 3134.27 SRR2453342.sralite, SRR2453342 SRA
SRX1261763 SRP063867 RNA-Seq PAIRED
GSM1888653: HUES13; Homo sapiens; RNA-Seq
Sample: SRS1074390
BioProject: PRJNA296379
BioSample: SAMN04096407
Platform: ILLUMINA
Instrument: Illumina HiSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: ESC
data set: nonisogenic
cell type: ESC
Original files (1)
ESC
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2453343 18347943 3706284486 2140.71 SRR2453343, SRR2453343.sralite SRA
SRX1261764 SRP063867 RNA-Seq PAIRED
GSM1888654: iPS18b; Homo sapiens; RNA-Seq
Sample: SRS1074391
BioProject: PRJNA296379
BioSample: SAMN04096408
Platform: ILLUMINA
Instrument: Illumina HiSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: iPSC
data set: nonisogenic
cell type: iPSC
Original files (1)
iPSC
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2453344 14407727 2910360854 1688.34 SRR2453344.sralite, SRR2453344 SRA
SRX1261765 SRP063867 RNA-Seq PAIRED
GSM1888655: iPS18; Homo sapiens; RNA-Seq
Sample: SRS1074389
BioProject: PRJNA296379
BioSample: SAMN04096409
Platform: ILLUMINA
Instrument: Illumina HiSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: iPSC
data set: nonisogenic
cell type: iPSC
Original files (1)
iPSC
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2453345 20085034 4057176868 2354.42 SRR2453345.sralite, SRR2453345 SRA
SRX1261766 SRP063867 RNA-Seq PAIRED
GSM1888656: HUES49; Homo sapiens; RNA-Seq
Sample: SRS1074387
BioProject: PRJNA296379
BioSample: SAMN04096410
Platform: ILLUMINA
Instrument: Illumina HiSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: ESC
data set: nonisogenic
cell type: ESC
Original files (1)
ESC
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2453346 33510349 6769090498 4062.21 SRR2453346.sralite, SRR2453346 SRA
SRX1261767 SRP063867 RNA-Seq PAIRED
GSM1888657: iPS17a; Homo sapiens; RNA-Seq
Sample: SRS1074388
BioProject: PRJNA296379
BioSample: SAMN04096411
Platform: ILLUMINA
Instrument: Illumina HiSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: iPSC
data set: nonisogenic
cell type: iPSC
Original files (1)
iPSC
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2453347 24159546 4880228292 2923.29 SRR2453347, SRR2453347.sralite SRA
SRX1261768 SRP063867 RNA-Seq PAIRED
GSM1888658: iPS17b; Homo sapiens; RNA-Seq
Sample: SRS1074386
BioProject: PRJNA296379
BioSample: SAMN04096412
Platform: ILLUMINA
Instrument: Illumina HiSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: iPSC
data set: nonisogenic
cell type: iPSC
Original files (1)
iPSC
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2453348 22526251 4550302702 2730.5 SRR2453348.sralite, SRR2453348 SRA
SRX1261769 SRP063867 RNA-Seq PAIRED
GSM1888659: iPS27e; Homo sapiens; RNA-Seq
Sample: SRS1074385
BioProject: PRJNA296379
BioSample: SAMN04096413
Platform: ILLUMINA
Instrument: Illumina HiSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: iPSC
data set: nonisogenic
cell type: iPSC
Original files (1)
iPSC
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2453349 23248065 4696109130 2822.09 SRR2453349, SRR2453349.sralite SRA
SRX1261770 SRP063867 RNA-Seq PAIRED
GSM1888660: iPS15b; Homo sapiens; RNA-Seq
Sample: SRS1074384
BioProject: PRJNA296379
BioSample: SAMN04096414
Platform: ILLUMINA
Instrument: Illumina HiSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: iPSC
data set: nonisogenic
cell type: iPSC
Original files (1)
iPSC
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2453350 26909725 5435764450 3272.92 SRR2453350, SRR2453350.sralite SRA
SRX1261771 SRP063867 RNA-Seq PAIRED
GSM1888661: H9; Homo sapiens; RNA-Seq
Sample: SRS1074383
BioProject: PRJNA296379
BioSample: SAMN04096415
Platform: ILLUMINA
Instrument: Illumina HiSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: ESC
data set: nonisogenic
cell type: ESC
Original files (1)
ESC
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2453351 30765767 6214684934 3695.0 SRR2453351.sralite, SRR2453351 SRA
SRX1261772 SRP063867 RNA-Seq PAIRED
GSM1888662: iPS11b; Homo sapiens; RNA-Seq
Sample: SRS1074382
BioProject: PRJNA296379
BioSample: SAMN04096416
Platform: ILLUMINA
Instrument: Illumina HiSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: iPSC
data set: nonisogenic
cell type: iPSC
Original files (1)
iPSC
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2453352 19781445 3995851890 2370.09 SRR2453352.sralite, SRR2453352 SRA
SRX1261773 SRP063867 RNA-Seq PAIRED
GSM1888663: iPS20b; Homo sapiens; RNA-Seq
Sample: SRS1074381
BioProject: PRJNA296379
BioSample: SAMN04096417
Platform: ILLUMINA
Instrument: Illumina HiSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: iPSC
data set: nonisogenic
cell type: iPSC
Original files (1)
iPSC
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2453353 23290762 4704733924 2797.45 SRR2453353, SRR2453353.sralite SRA
SRX1261774 SRP063867 RNA-Seq PAIRED
GSM1888664: HUES1; Homo sapiens; RNA-Seq
Sample: SRS1074380
BioProject: PRJNA296379
BioSample: SAMN04096418
Platform: ILLUMINA
Instrument: Illumina HiSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: ESC
data set: nonisogenic
cell type: ESC
Original files (1)
ESC
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2453354 25915559 5234942918 3122.47 SRR2453354.sralite, SRR2453354 SRA
SRX1261775 SRP063867 RNA-Seq PAIRED
GSM1888665: HUES45; Homo sapiens; RNA-Seq
Sample: SRS1074379
BioProject: PRJNA296379
BioSample: SAMN04096419
Platform: ILLUMINA
Instrument: Illumina HiSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: ESC
data set: nonisogenic
cell type: ESC
Original files (1)
ESC
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2453355 24782776 5006120752 2966.87 SRR2453355, SRR2453355.sralite SRA
SRX1261776 SRP063867 RNA-Seq PAIRED
GSM1888666: HUES62; Homo sapiens; RNA-Seq
Sample: SRS1074377
BioProject: PRJNA296379
BioSample: SAMN04096420
Platform: ILLUMINA
Instrument: Illumina HiSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: ESC
data set: nonisogenic
cell type: ESC
Original files (1)
ESC
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2453356 21467173 4336368946 2543.97 SRR2453356.sralite, SRR2453356 SRA
SRX1261777 SRP063867 RNA-Seq PAIRED
GSM1888667: iPS29e; Homo sapiens; RNA-Seq
Sample: SRS1074376
BioProject: PRJNA296379
BioSample: SAMN04096421
Platform: ILLUMINA
Instrument: Illumina HiSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: iPSC
data set: nonisogenic
cell type: iPSC
Original files (1)
iPSC
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2453357 23490830 4745147660 2777.07 SRR2453357, SRR2453357.sralite SRA
SRX1261778 SRP063867 RNA-Seq PAIRED
GSM1888668: iPS11c; Homo sapiens; RNA-Seq
Sample: SRS1074378
BioProject: PRJNA296379
BioSample: SAMN04096422
Platform: ILLUMINA
Instrument: Illumina HiSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: iPSC
data set: nonisogenic
cell type: iPSC
Original files (1)
iPSC
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2453358 17914590 3618747180 2118.18 SRR2453358.sralite, SRR2453358 SRA
SRX1261779 SRP063867 RNA-Seq PAIRED
GSM1888669: H1; Homo sapiens; RNA-Seq
Sample: SRS1074374
BioProject: PRJNA296379
BioSample: SAMN04096423
Platform: ILLUMINA
Instrument: Illumina HiSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: ESC
data set: nonisogenic
cell type: ESC
Original files (1)
ESC
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2453359 23006881 4647389962 2731.07 SRR2453359, SRR2453359.sralite SRA
SRX1261780 SRP063867 RNA-Seq PAIRED
GSM1888670: HUES8; Homo sapiens; RNA-Seq
Sample: SRS1074375
BioProject: PRJNA296379
BioSample: SAMN04096424
Platform: ILLUMINA
Instrument: Illumina HiSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: ESC
data set: nonisogenic
cell type: ESC
Original files (1)
ESC
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2453360 21837612 4411197624 2576.82 SRR2453360, SRR2453360.sralite SRA
SRX1261781 SRP063867 RNA-Seq PAIRED
GSM1888671: HUES66; Homo sapiens; RNA-Seq
Sample: SRS1074373
BioProject: PRJNA296379
BioSample: SAMN04096425
Platform: ILLUMINA
Instrument: Illumina HiSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: ESC
data set: nonisogenic
cell type: ESC
Original files (1)
ESC
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2453361 19130266 3864313732 2267.46 SRR2453361, SRR2453361.sralite SRA
SRX1261782 SRP063867 RNA-Seq PAIRED
GSM1888672: HUES28; Homo sapiens; RNA-Seq
Sample: SRS1074372
BioProject: PRJNA296379
BioSample: SAMN04096426
Platform: ILLUMINA
Instrument: Illumina HiSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: ESC
data set: nonisogenic
cell type: ESC
Original files (1)
ESC
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2453362 23839464 4815571728 2814.34 SRR2453362, SRR2453362.sralite SRA
SRX1261783 SRP063867 RNA-Seq PAIRED
GSM1888673: iPS27b; Homo sapiens; RNA-Seq
Sample: SRS1074371
BioProject: PRJNA296379
BioSample: SAMN04096427
Platform: ILLUMINA
Instrument: Illumina HiSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: iPSC
data set: nonisogenic
cell type: iPSC
Original files (1)
iPSC
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2453363 18587328 3754640256 2193.53 SRR2453363, SRR2453363.sralite SRA
SRX1261784 SRP063867 RNA-Seq PAIRED
GSM1888674: HUES48; Homo sapiens; RNA-Seq
Sample: SRS1074370
BioProject: PRJNA296379
BioSample: SAMN04096428
Platform: ILLUMINA
Instrument: Illumina HiSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: ESC
data set: nonisogenic
cell type: ESC
Original files (1)
ESC
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2453364 23781821 4803927842 2824.67 SRR2453364, SRR2453364.sralite SRA
SRX1261785 SRP063867 RNA-Seq PAIRED
GSM1888675: HUES64; Homo sapiens; RNA-Seq
Sample: SRS1074369
BioProject: PRJNA296379
BioSample: SAMN04096432
Platform: ILLUMINA
Instrument: Illumina HiSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: ESC
data set: nonisogenic
cell type: ESC
Original files (1)
ESC
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2453365 24253377 4899182154 2864.25 SRR2453365, SRR2453365.sralite SRA
SRX1261786 SRP063867 RNA-Seq PAIRED
GSM1888676: HUES9; Homo sapiens; RNA-Seq
Sample: SRS1074365
BioProject: PRJNA296379
BioSample: SAMN04096463
Platform: ILLUMINA
Instrument: Illumina HiSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: ESC
data set: nonisogenic
cell type: ESC
Original files (1)
ESC
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2453366 21034976 4249065152 2465.45 SRR2453366, SRR2453366.sralite SRA
SRX1261787 SRP063867 RNA-Seq PAIRED
GSM1888677: HUES65; Homo sapiens; RNA-Seq
Sample: SRS1074366
BioProject: PRJNA296379
BioSample: SAMN04096464
Platform: ILLUMINA
Instrument: Illumina HiSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: ESC
data set: nonisogenic
cell type: ESC
Original files (1)
ESC
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2453367 19321003 3902842606 2251.36 SRR2453367, SRR2453367.sralite SRA
SRX1261788 SRP063867 RNA-Seq PAIRED
GSM1888678: HUES53; Homo sapiens; RNA-Seq
Sample: SRS1074367
BioProject: PRJNA296379
BioSample: SAMN04096465
Platform: ILLUMINA
Instrument: Illumina HiSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: ESC
data set: nonisogenic
cell type: ESC
Original files (1)
ESC
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2453368 19478248 3934606096 2270.74 SRR2453368, SRR2453368.sralite SRA
SRX1261789 SRP063867 RNA-Seq PAIRED
GSM1888679: iPS18c; Homo sapiens; RNA-Seq
Sample: SRS1074364
BioProject: PRJNA296379
BioSample: SAMN04096429
Platform: ILLUMINA
Instrument: Illumina HiSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: iPSC
data set: nonisogenic
cell type: iPSC
Original files (1)
iPSC
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2453369 22874718 4620693036 2675.79 SRR2453369, SRR2453369.sralite SRA
SRX1261790 SRP063867 RNA-Seq PAIRED
GSM1888680: HUES3; Homo sapiens; RNA-Seq
Sample: SRS1074363
BioProject: PRJNA296379
BioSample: SAMN04096430
Platform: ILLUMINA
Instrument: Illumina HiSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: ESC
data set: nonisogenic
cell type: ESC
Original files (1)
ESC
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2453370 22292754 4503136308 2598.41 SRR2453370, SRR2453370.sralite SRA
SRX1261791 SRP063867 RNA-Seq PAIRED
GSM1888681: HUES63; Homo sapiens; RNA-Seq
Sample: SRS1074362
BioProject: PRJNA296379
BioSample: SAMN04096431
Platform: ILLUMINA
Instrument: Illumina HiSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: ESC
data set: nonisogenic
cell type: ESC
Original files (1)
ESC
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR2453371 36239240 7320326480 4299.31 SRR2453371, SRR2453371.sralite SRA
SRX6658463 SRP063867 Bisulfite-Seq SINGLE
GSM4007715: hESC2.6 Fib; Homo sapiens; Bisulfite-Seq
Sample: SRS5218924
BioProject: PRJNA296379
BioSample: SAMN12497963
Platform: ILLUMINA
Instrument: Illumina HiSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: HUES2
cell type: Fibroblast
Original files (1)
HUES2
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR9908388 22696489 658198181 363.76 hESC_SC2_6_Fibroblase_721805.RRBS.0.bam, SRR9908388, SRR9908388.srali… SRA
SRX6658464 SRP063867 Bisulfite-Seq SINGLE
GSM4007716: hESC3.6 Fib; Homo sapiens; Bisulfite-Seq
Sample: SRS5218925
BioProject: PRJNA296379
BioSample: SAMN12497962
Platform: ILLUMINA
Instrument: Illumina HiSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: HUES3
cell type: Fibroblast
Original files (1)
HUES3
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR9908389 25780129 747623741 409.08 hESC_SC3_6_Fibroblase_721806.RRBS.0.bam, SRR9908389, SRR9908389.srali… SRA
SRX6658465 SRP063867 Bisulfite-Seq SINGLE
GSM4007717: hESC2.6 G5; Homo sapiens; Bisulfite-Seq
Sample: SRS5218926
BioProject: PRJNA296379
BioSample: SAMN12497961
Platform: ILLUMINA
Instrument: Illumina HiSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: HUES2
cell type: ESC
Original files (1)
HUES2
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR9908390 11989594 347698226 193.71 hESC_GFP5_721807.RRBS.0.bam, SRR9908390, SRR9908390.sralite SRA
SRX6658466 SRP063867 Bisulfite-Seq SINGLE
GSM4007718: hiPSC1; Homo sapiens; Bisulfite-Seq
Sample: SRS5218927
BioProject: PRJNA296379
BioSample: SAMN12497960
Platform: ILLUMINA
Instrument: Illumina HiSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: HUES2
cell type: iPSC
Original files (1)
HUES2
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR9908391 16248845 471216505 257.28 hiPSC1_721808.RRBS.0.bam, SRR9908391, SRR9908391.sralite SRA
SRX6658467 SRP063867 Bisulfite-Seq SINGLE
GSM4007719: hiPSC9; Homo sapiens; Bisulfite-Seq
Sample: SRS5218928
BioProject: PRJNA296379
BioSample: SAMN12497959
Platform: ILLUMINA
Instrument: Illumina HiSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: HUES3
cell type: iPSC
Original files (1)
HUES3
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR9908392 22964655 665974995 365.1 hiPSC9_721809.RRBS.0.bam, SRR9908392, SRR9908392.sralite SRA
SRX6658468 SRP063867 Bisulfite-Seq SINGLE
GSM4007720: HUES3; Homo sapiens; Bisulfite-Seq
Sample: SRS5218929
BioProject: PRJNA296379
BioSample: SAMN12497958
Platform: ILLUMINA
Instrument: Illumina HiSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: HUES3
cell type: ESC
Original files (1)
HUES3
Runs (2)
Run Spots Bases Size (MB) Files Link
SRR9908393 30623270 1102437720 390.92 hES_HUES3_p27_46660.RRBS.0.bam, SRR9908393, SRR9908393.sralite SRA
SRR9908394 31438817 1131797412 368.9 hES_HUES3_p27_46660.RRBS.1.bam, SRR9908394, SRR9908394.sralite SRA
SRX6658469 SRP063867 Bisulfite-Seq SINGLE
GSM4007721: hiPSC3; Homo sapiens; Bisulfite-Seq
Sample: SRS5218930
BioProject: PRJNA296379
BioSample: SAMN12497957
Platform: ILLUMINA
Instrument: Illumina HiSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: HUES2
cell type: iPSC
Original files (1)
HUES2
Runs (3)
Run Spots Bases Size (MB) Files Link
SRR9908395 57780 2959430 1.55 hiPSC_3.RRBS.0.bam, SRR9908395, SRR9908395.sralite SRA
SRR9908396 498552 26044968 9.27 hiPSC_3.RRBS.1.bam, SRR9908396, SRR9908396.sralite SRA
SRR9908397 774723 40540832 14.39 hiPSC_3.RRBS.2.bam, SRR9908397, SRR9908397.sralite SRA
SRX6658470 SRP063867 Bisulfite-Seq SINGLE
GSM4007722: hiPSC8; Homo sapiens; Bisulfite-Seq
Sample: SRS5218931
BioProject: PRJNA296379
BioSample: SAMN12497954
Platform: ILLUMINA
Instrument: Illumina HiSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: HUES3
cell type: iPSC
Original files (1)
HUES3
Runs (3)
Run Spots Bases Size (MB) Files Link
SRR9908398 1181014 59986600 20.91 hiPSC_8.RRBS.0.bam, SRR9908398, SRR9908398.sralite SRA
SRR9908399 9968221 517727689 138.3 hiPSC_8.RRBS.1.bam, SRR9908399, SRR9908399.sralite SRA
SRR9908400 16073799 835742570 225.84 hiPSC_8.RRBS.2.bam, SRR9908400, SRR9908400.sralite SRA
SRX6658471 SRP063867 Bisulfite-Seq SINGLE
GSM4007723: hESC3.6 G2; Homo sapiens; Bisulfite-Seq
Sample: SRS5218932
BioProject: PRJNA296379
BioSample: SAMN12497951
Platform: ILLUMINA
Instrument: Illumina HiSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: HUES3
cell type: ESC
Original files (1)
HUES3
Runs (3)
Run Spots Bases Size (MB) Files Link
SRR9908401 62855 3216832 1.62 hESCGFP2.RRBS.0.bam, SRR9908401, SRR9908401.sralite SRA
SRR9908402 3446805 179674558 52.84 hESCGFP2.RRBS.1.bam, SRR9908402, SRR9908402.sralite SRA
SRR9908403 5607741 292625228 97.03 hESCGFP2.RRBS.2.bam, SRR9908403, SRR9908403.sralite SRA
SRX6658472 SRP063867 Bisulfite-Seq SINGLE
GSM4007724: hESC3.6 G3; Homo sapiens; Bisulfite-Seq
Sample: SRS5218933
BioProject: PRJNA296379
BioSample: SAMN12497949
Platform: ILLUMINA
Instrument: Illumina HiSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: HUES3
cell type: ESC
Original files (1)
HUES3
Runs (3)
Run Spots Bases Size (MB) Files Link
SRR9908404 503807 25532358 9.59 hESCGFP3.RRBS.0.bam, SRR9908404, SRR9908404.sralite SRA
SRR9908405 5679364 296087642 79.96 hESCGFP3.RRBS.1.bam, SRR9908405, SRR9908405.sralite SRA
SRR9908406 9187219 479693575 143.78 hESCGFP3.RRBS.2.bam, SRR9908406, SRR9908406.sralite SRA
SRX6658473 SRP063867 Bisulfite-Seq SINGLE
GSM4007725: hESC2.6 G12; Homo sapiens; Bisulfite-Seq
Sample: SRS5218934
BioProject: PRJNA296379
BioSample: SAMN12497947
Platform: ILLUMINA
Instrument: Illumina HiSeq 2000
Organism: Homo sapiens
Sample attributes
source_name: HUES2
cell type: ESC
Original files (1)
HUES2
Runs (3)
Run Spots Bases Size (MB) Files Link
SRR9908407 39947 2033092 1.15 hESCGFP12.RRBS.0.bam, SRR9908407, SRR9908407.sralite SRA
SRR9908408 2444691 126791870 39.56 hESCGFP12.RRBS.1.bam, SRR9908408, SRR9908408.sralite SRA
SRR9908409 4132063 214640771 68.62 hESCGFP12.RRBS.2.bam, SRR9908409, SRR9908409.sralite SRA

Linked Publications (1)

iPSCORE: A Resource of 222 iPSC Lines Enabling Functional Characterization of Genetic Variation across a Variety of Cell Types.
Stem cell reports · 2017

Data Files (95)

Accession File Name Stored Type Output Type Mapping Assembly Size Download
— hESCGFP12.RRBS.0.bam Bisulfite-Seq 1.1 MB link
— hESCGFP12.RRBS.1.bam Bisulfite-Seq 39.6 MB link
— hESCGFP12.RRBS.2.bam Bisulfite-Seq 68.6 MB link
— hESCGFP2.RRBS.0.bam Bisulfite-Seq 1.6 MB link
— hESCGFP2.RRBS.1.bam Bisulfite-Seq 52.8 MB link
— hESCGFP2.RRBS.2.bam Bisulfite-Seq 97.0 MB link
— hESCGFP3.RRBS.0.bam Bisulfite-Seq 9.6 MB link
— hESCGFP3.RRBS.1.bam Bisulfite-Seq 80.0 MB link
— hESCGFP3.RRBS.2.bam Bisulfite-Seq 143.8 MB link
— hESC_GFP5_721807.RRBS.0.bam Bisulfite-Seq 193.7 MB link
— hESC_SC2_6_Fibroblase_721805.RRBS.0.bam Bisulfite-Seq 363.8 MB link
— hESC_SC3_6_Fibroblase_721806.RRBS.0.bam Bisulfite-Seq 409.1 MB link
— hES_HUES3_p27_46660.RRBS.0.bam Bisulfite-Seq 390.9 MB link
— hES_HUES3_p27_46660.RRBS.1.bam Bisulfite-Seq 368.9 MB link
— hiPSC1_721808.RRBS.0.bam Bisulfite-Seq 257.3 MB link
— hiPSC_3.RRBS.0.bam Bisulfite-Seq 1.5 MB link
— hiPSC_3.RRBS.1.bam Bisulfite-Seq 9.3 MB link
— hiPSC_3.RRBS.2.bam Bisulfite-Seq 14.4 MB link
— hiPSC_8.RRBS.0.bam Bisulfite-Seq 20.9 MB link
— hiPSC_8.RRBS.1.bam Bisulfite-Seq 138.3 MB link
— hiPSC_8.RRBS.2.bam Bisulfite-Seq 225.8 MB link
— hiPSC9_721809.RRBS.0.bam Bisulfite-Seq 365.1 MB link
— Sample_hJ-11_iPS_Fibroblast.R1.3VFXHS1_243_D0RC7ACXX_1… RNA-Seq 2.5 GB link
— Sample_hJ-11_iPS_Fibroblast.R1.3VFXHS1_264_D0T8EACXX_2… RNA-Seq 3.6 GB link
— Sample_hJ-11_iPS_p38.R1.fastq.gz RNA-Seq 7.4 GB link
— Sample_hJ-1_iPS_Fibroblast.R1.fastq.gz RNA-Seq 8.1 GB link
— Sample_hJ-1_iPS_p38.R1.3VFXHS1_243_D0RC7ACXX_7.fastq.gz RNA-Seq 4.6 GB link
— Sample_hJ-1_iPS_p38.R1.3VFXHS1_264_D0T8EACXX_2.fastq.gz RNA-Seq 535.0 MB link
— Sample_hJ-2_iPS_Fibroblast.R1.fastq.gz RNA-Seq 6.9 GB link
— Sample_hJ-2_iPS_p38.R1.fastq.gz RNA-Seq 5.2 GB link
— Sample_hJ-3_iPS_Fibroblast.R1.fastq.gz RNA-Seq 6.5 GB link
— Sample_hJ-3_iPS_p38.R1.fastq.gz RNA-Seq 6.3 GB link
— Sample_hJ-8_iPS_Fibroblast.R1.fastq.gz RNA-Seq 5.9 GB link
— Sample_hJ-8_iPS_p39.R1.fastq.gz RNA-Seq 9.7 GB link
— Sample_hJ-9_iPS_Fibroblast.R1.fastq.gz RNA-Seq 6.8 GB link
— Sample_hJ-9_iPS_p38.R1.3VFXHS1_257_D0RBJACXX_2.fastq.gz RNA-Seq 2.6 GB link
— Sample_hJ-9_iPS_p38.R1.3VFXHS1_257_D0RBJACXX_3.fastq.gz RNA-Seq 57.8 MB link
— Sample_hJ-9_iPS_p38.R1.3VFXHS1_264_D0T8EACXX_2.fastq.gz RNA-Seq 1.8 GB link
— Sample_HUES_2-1-p41plus8.R1.fastq.gz RNA-Seq 6.3 GB link
— Sample_HUES_2-2-p41plus8.R1.fastq.gz RNA-Seq 6.1 GB link
— Sample_HUES_2-3-p41plus8.R1.fastq.gz RNA-Seq 6.5 GB link
— Sample_HUES_2-6_Fibroblast.R1.fastq.gz RNA-Seq 5.9 GB link
— Sample_HUES_2-6_GFP_05_Fibroblast.R1.fastq.gz RNA-Seq 5.0 GB link
— Sample_HUES_2-6_GFP_12_Fibroblast.R1.fastq.gz RNA-Seq 5.6 GB link
— Sample_HUES_2-6_GFP-12_p32.R1.3VFXHS1_257_D0RBJACXX_3.… RNA-Seq 4.0 GB link
— Sample_HUES_2-6_GFP-12_p32.R1.3VFXHS1_264_D0T8EACXX_2.… RNA-Seq 1002.9 MB link
— Sample_HUES_2-6_GFP_13_Fibroblast.R1.fastq.gz RNA-Seq 5.1 GB link
— Sample_HUES_2-6_GFP-13_p32.R1.3VFXHS1_257_D0RBJACXX_3.… RNA-Seq 2.6 GB link
— Sample_HUES_2-6_GFP-13_p32.R1.3VFXHS1_264_D0T8EACXX_2.… RNA-Seq 2.4 GB link
— Sample_HUES_2-6_GFP-5_p32.R1.3VFXHS1_257_D0RBJACXX_3.f… RNA-Seq 1.7 GB link
— Sample_HUES_2-6_GFP-5_p32.R1.3VFXHS1_264_D0T8EACXX_2.f… RNA-Seq 2.9 GB link
— Sample_HUES_3-1_p51plus7.R1.fastq.gz RNA-Seq 5.5 GB link
— Sample_HUES_3-2_p51plus7.R1.3VFXHS1_257_D0RBJACXX_7.fa… RNA-Seq 3.9 GB link
— Sample_HUES_3-2_p51plus7.R1.3VFXHS1_264_D0T8EACXX_1.fa… RNA-Seq 970.7 MB link
— Sample_HUES_3-3_p51plus7.R1.fastq.gz RNA-Seq 6.6 GB link
— Sample_HUES_3-6_Fibroblast.R1.3VFXHS1_264_D0T8EACXX_2.… RNA-Seq 1.5 GB link
— Sample_HUES_3-6_Fibroblast.R2.3VFXHS1_243_D0RC7ACXX_6.… RNA-Seq 3.6 GB link
— Sample_HUES_3-6_GFP_02_Fibroblast.R1.fastq.gz RNA-Seq 5.0 GB link
— Sample_HUES_3-6_GFP_03_Fibroblast.R2.fastq.gz RNA-Seq 4.0 GB link
— Sample_HUES_3-6_GFP_15_Fibroblast.R1.fastq.gz RNA-Seq 9.4 GB link
— Sample_HUES_3-6_GFP-15_p32.R1.3VFXHS1_264_D0T8EACXX_1.… RNA-Seq 1.3 GB link
— Sample_HUES_3-6_GFP-2_p32.R1.fastq.gz RNA-Seq 5.7 GB link
— Sample_HUES_3-6_GFP-3_p32.R1.fastq.gz RNA-Seq 5.8 GB link
— SRR2453337.sralite RNA-Seq 3.1 GB link
— SRR2453341 RNA-Seq 4.5 GB link
— SRR2453342.sralite RNA-Seq 3.1 GB link
— SRR2453343 RNA-Seq 2.1 GB link
— SRR2453344.sralite RNA-Seq 1.6 GB link
— SRR2453345.sralite RNA-Seq 2.3 GB link
— SRR2453346.sralite RNA-Seq 4.0 GB link
— SRR2453347 RNA-Seq 2.9 GB link
— SRR2453348.sralite RNA-Seq 2.7 GB link
— SRR2453349 RNA-Seq 2.8 GB link
— SRR2453350 RNA-Seq 3.2 GB link
— SRR2453351.sralite RNA-Seq 3.6 GB link
— SRR2453352.sralite RNA-Seq 2.3 GB link
— SRR2453353 RNA-Seq 2.7 GB link
— SRR2453354.sralite RNA-Seq 3.0 GB link
— SRR2453355 RNA-Seq 2.9 GB link
— SRR2453356.sralite RNA-Seq 2.5 GB link
— SRR2453357 RNA-Seq 2.7 GB link
— SRR2453358.sralite RNA-Seq 2.1 GB link
— SRR2453359 RNA-Seq 2.7 GB link
— SRR2453360 RNA-Seq 2.5 GB link
— SRR2453361 RNA-Seq 2.2 GB link
— SRR2453362 RNA-Seq 2.7 GB link
— SRR2453363 RNA-Seq 2.1 GB link
— SRR2453364 RNA-Seq 2.8 GB link
— SRR2453365 RNA-Seq 2.8 GB link
— SRR2453366 RNA-Seq 2.4 GB link
— SRR2453367 RNA-Seq 2.2 GB link
— SRR2453368 RNA-Seq 2.2 GB link
— SRR2453369 RNA-Seq 2.6 GB link
— SRR2453370 RNA-Seq 2.5 GB link
— SRR2453371 RNA-Seq 4.2 GB link