ENCSR419XDN
ENCSR ENCODERNA Bind-n-Seq (RBNS) pulldown experiment against SECP43
Experiment Types:
RNA Bind-n-Seq
Status:
released
Contact:
Chris Burge, MIT
Summary
RNA Bind-n-Seq of TRNAU1AP in
Overall Design
RNA Bind-n-Seq (RBNS) pulldown experiment against SECP43
Analysis
View Data Processing
Analysis page is available for ENCSR419XDN.
Dataset Citations (1)
A large-scale binding and functional map of human RNA-binding proteins.
PMID 32728246
· 2020
· Nature
Eric L Van Nostrand, Peter Freese, Gabriel A Pratt, Xiaofeng Wang, Xintao Wei, Rui Xiao, Steven M Blue, Jia-Yu Chen, Neal A L Cody, Daniel Dominguez, Sara Olson, Balaji Sundararaman, Lijun Zhan, Cassandra Bazile, Louis Philip Benoit Bouvrette, Julie Bergalet, Michael O Duff, Keri E Garcia, Chelsea Gelboin-Burkhart, Myles Hochman, Nicole J Lambert, Hairi Li, Michael P McGurk, Thai B Nguyen, Tsultrim Palden, Ines Rabano, Shashank Sathe, Rebecca Stanton, Amanda Su, Ruth Wang, Brian A Yee, Bing Zhou, Ashley L Louie, Stefan Aigner, Xiang-Dong Fu, Eric Lécuyer, Christopher B Burge, Brenton R Graveley, Gene W Yeo
ENCODE Metadata
Total file size: 2.0 GBFiles: 13
Unique ENC file IDs: 13
File Formats
tsv (8)
fastq (5)
Output types (3)
reads (5)
enrichment (4)
library fraction (4)
Linked Publications (1)
Data Files (13)
| Accession | File Name | Stored Type | Output Type | Mapping Assembly | Size | Download | |
|---|---|---|---|---|---|---|---|
| ENCFF228IGY | ENCFF228IGY.fastq | fastq (reads) | reads | 318.5 MB | link | ||
| ENCFF330UOX | ENCFF330UOX.fastq | fastq (reads) | reads | 566.3 MB | link | ||
| ENCFF339GLP | ENCFF339GLP.fastq | fastq (reads) | reads | 325.7 MB | link | ||
| ENCFF369WZD | ENCFF369WZD.fastq | fastq (reads) | reads | 332.6 MB | link | ||
| ENCFF823RGZ | ENCFF823RGZ.fastq | fastq (reads) | reads | 474.2 MB | link | ||
| ENCFF174NLG | ENCFF174NLG.tsv | tsv (enrichment) | enrichment | 168.0 KB | link | ||
| ENCFF232FXD | ENCFF232FXD.tsv | tsv (enrichment) | enrichment | 688.1 KB | link | ||
| ENCFF315DBD | ENCFF315DBD.tsv | tsv (enrichment) | enrichment | 41.0 KB | link | ||
| ENCFF848YLS | ENCFF848YLS.tsv | tsv (enrichment) | enrichment | 10.0 KB | link | ||
| ENCFF077FYY | ENCFF077FYY.tsv | tsv (library fraction) | library fraction | 1.1 MB | link | ||
| ENCFF361MIR | ENCFF361MIR.tsv | tsv (library fraction) | library fraction | 15.5 KB | link | ||
| ENCFF850VYB | ENCFF850VYB.tsv | tsv (library fraction) | library fraction | 64.5 KB | link | ||
| ENCFF858OFZ | ENCFF858OFZ.tsv | tsv (library fraction) | library fraction | 264.9 KB | link |