ENCSR951YCV
ENCSR ENCODERNA Bind-n-Seq (RBNS) pulldown experiment against SFPQ
Experiment Types:
RNA Bind-n-Seq
Status:
released
Contact:
Chris Burge, MIT
Summary
RNA Bind-n-Seq of SFPQ in
Overall Design
RNA Bind-n-Seq (RBNS) pulldown experiment against SFPQ
Analysis
View Data Processing
Analysis page is available for ENCSR951YCV.
Dataset Citations (1)
A large-scale binding and functional map of human RNA-binding proteins.
PMID 32728246
· 2020
· Nature
Eric L Van Nostrand, Peter Freese, Gabriel A Pratt, Xiaofeng Wang, Xintao Wei, Rui Xiao, Steven M Blue, Jia-Yu Chen, Neal A L Cody, Daniel Dominguez, Sara Olson, Balaji Sundararaman, Lijun Zhan, Cassandra Bazile, Louis Philip Benoit Bouvrette, Julie Bergalet, Michael O Duff, Keri E Garcia, Chelsea Gelboin-Burkhart, Myles Hochman, Nicole J Lambert, Hairi Li, Michael P McGurk, Thai B Nguyen, Tsultrim Palden, Ines Rabano, Shashank Sathe, Rebecca Stanton, Amanda Su, Ruth Wang, Brian A Yee, Bing Zhou, Ashley L Louie, Stefan Aigner, Xiang-Dong Fu, Eric Lécuyer, Christopher B Burge, Brenton R Graveley, Gene W Yeo
ENCODE Metadata
Total file size: 2.4 GBFiles: 14
Unique ENC file IDs: 14
File Formats
tsv (8)
fastq (5)
bed (1)
Output types (4)
reads (5)
enrichment (4)
library fraction (4)
peaks (1)
Linked Publications (1)
Data Files (14)
| Accession | File Name | Stored Type | Output Type | Mapping Assembly | Size | Download | |
|---|---|---|---|---|---|---|---|
| ENCFF728KCD | ENCFF728KCD.bed | bed (peaks) | peaks | 171.5 KB | link | ||
| ENCFF092VIT | ENCFF092VIT.fastq | fastq (reads) | reads | 480.7 MB | link | ||
| ENCFF597YAL | ENCFF597YAL.fastq | fastq (reads) | reads | 368.4 MB | link | ||
| ENCFF642XCH | ENCFF642XCH.fastq | fastq (reads) | reads | 535.5 MB | link | ||
| ENCFF852PPY | ENCFF852PPY.fastq | fastq (reads) | reads | 504.0 MB | link | ||
| ENCFF980WQW | ENCFF980WQW.fastq | fastq (reads) | reads | 521.0 MB | link | ||
| ENCFF234GJL | ENCFF234GJL.tsv | tsv (enrichment) | enrichment | 10.0 KB | link | ||
| ENCFF360OVB | ENCFF360OVB.tsv | tsv (enrichment) | enrichment | 686.0 KB | link | ||
| ENCFF494LLV | ENCFF494LLV.tsv | tsv (enrichment) | enrichment | 167.7 KB | link | ||
| ENCFF890ORL | ENCFF890ORL.tsv | tsv (enrichment) | enrichment | 41.0 KB | link | ||
| ENCFF020VFS | ENCFF020VFS.tsv | tsv (library fraction) | library fraction | 1.1 MB | link | ||
| ENCFF187CTW | ENCFF187CTW.tsv | tsv (library fraction) | library fraction | 264.5 KB | link | ||
| ENCFF702OTR | ENCFF702OTR.tsv | tsv (library fraction) | library fraction | 15.3 KB | link | ||
| ENCFF859JYQ | ENCFF859JYQ.tsv | tsv (library fraction) | library fraction | 64.1 KB | link |