ENCSR724HZI
ENCSR ENCODERNA Bind-n-Seq (RBNS) pulldown experiment against SRSF9
Experiment Types:
RNA Bind-n-Seq
Status:
released
Contact:
Chris Burge, MIT
Summary
RNA Bind-n-Seq of SRSF9 in
Overall Design
RNA Bind-n-Seq (RBNS) pulldown experiment against SRSF9
Analysis
View Data Processing
Analysis page is available for ENCSR724HZI.
Dataset Citations (1)
A large-scale binding and functional map of human RNA-binding proteins.
PMID 32728246
· 2020
· Nature
Eric L Van Nostrand, Peter Freese, Gabriel A Pratt, Xiaofeng Wang, Xintao Wei, Rui Xiao, Steven M Blue, Jia-Yu Chen, Neal A L Cody, Daniel Dominguez, Sara Olson, Balaji Sundararaman, Lijun Zhan, Cassandra Bazile, Louis Philip Benoit Bouvrette, Julie Bergalet, Michael O Duff, Keri E Garcia, Chelsea Gelboin-Burkhart, Myles Hochman, Nicole J Lambert, Hairi Li, Michael P McGurk, Thai B Nguyen, Tsultrim Palden, Ines Rabano, Shashank Sathe, Rebecca Stanton, Amanda Su, Ruth Wang, Brian A Yee, Bing Zhou, Ashley L Louie, Stefan Aigner, Xiang-Dong Fu, Eric Lécuyer, Christopher B Burge, Brenton R Graveley, Gene W Yeo
ENCODE Metadata
Total file size: 2.0 GBFiles: 14
Unique ENC file IDs: 14
File Formats
tsv (8)
fastq (5)
bed (1)
Output types (4)
reads (5)
enrichment (4)
library fraction (4)
peaks (1)
Linked Publications (1)
Data Files (14)
| Accession | File Name | Stored Type | Output Type | Mapping Assembly | Size | Download | |
|---|---|---|---|---|---|---|---|
| ENCFF349NQV | ENCFF349NQV.bed | bed (peaks) | peaks | 52.0 KB | link | ||
| ENCFF042JZR | ENCFF042JZR.fastq | fastq (reads) | reads | 375.3 MB | link | ||
| ENCFF305KBH | ENCFF305KBH.fastq | fastq (reads) | reads | 403.1 MB | link | ||
| ENCFF413ETY | ENCFF413ETY.fastq | fastq (reads) | reads | 399.3 MB | link | ||
| ENCFF779KVV | ENCFF779KVV.fastq | fastq (reads) | reads | 469.0 MB | link | ||
| ENCFF927STX | ENCFF927STX.fastq | fastq (reads) | reads | 407.0 MB | link | ||
| ENCFF081SZX | ENCFF081SZX.tsv | tsv (enrichment) | enrichment | 10.0 KB | link | ||
| ENCFF131QFS | ENCFF131QFS.tsv | tsv (enrichment) | enrichment | 688.0 KB | link | ||
| ENCFF518QQO | ENCFF518QQO.tsv | tsv (enrichment) | enrichment | 41.0 KB | link | ||
| ENCFF808FRG | ENCFF808FRG.tsv | tsv (enrichment) | enrichment | 168.0 KB | link | ||
| ENCFF434EMZ | ENCFF434EMZ.tsv | tsv (library fraction) | library fraction | 1.1 MB | link | ||
| ENCFF902PZM | ENCFF902PZM.tsv | tsv (library fraction) | library fraction | 15.1 KB | link | ||
| ENCFF904PHM | ENCFF904PHM.tsv | tsv (library fraction) | library fraction | 265.5 KB | link | ||
| ENCFF930MUF | ENCFF930MUF.tsv | tsv (library fraction) | library fraction | 63.8 KB | link |