ENCSR569UIU
ENCSR ENCODERNA Bind-n-Seq (RBNS) pulldown experiment against hnRNPC
Experiment Types:
RNA Bind-n-Seq
Status:
released
Contact:
Chris Burge, MIT
Summary
RNA Bind-n-Seq of HNRNPC in
Overall Design
RNA Bind-n-Seq (RBNS) pulldown experiment against hnRNPC
Analysis
View Data Processing
Analysis page is available for ENCSR569UIU.
Dataset Citations (1)
A large-scale binding and functional map of human RNA-binding proteins.
PMID 32728246
· 2020
· Nature
Eric L Van Nostrand, Peter Freese, Gabriel A Pratt, Xiaofeng Wang, Xintao Wei, Rui Xiao, Steven M Blue, Jia-Yu Chen, Neal A L Cody, Daniel Dominguez, Sara Olson, Balaji Sundararaman, Lijun Zhan, Cassandra Bazile, Louis Philip Benoit Bouvrette, Julie Bergalet, Michael O Duff, Keri E Garcia, Chelsea Gelboin-Burkhart, Myles Hochman, Nicole J Lambert, Hairi Li, Michael P McGurk, Thai B Nguyen, Tsultrim Palden, Ines Rabano, Shashank Sathe, Rebecca Stanton, Amanda Su, Ruth Wang, Brian A Yee, Bing Zhou, Ashley L Louie, Stefan Aigner, Xiang-Dong Fu, Eric Lécuyer, Christopher B Burge, Brenton R Graveley, Gene W Yeo
ENCODE Metadata
Total file size: 1.5 GBFiles: 13
Unique ENC file IDs: 13
File Formats
tsv (6)
fastq (5)
bed (2)
Output types (4)
reads (5)
enrichment (3)
library fraction (3)
peaks (2)
Linked Publications (1)
Data Files (13)
| Accession | File Name | Stored Type | Output Type | Mapping Assembly | Size | Download | |
|---|---|---|---|---|---|---|---|
| ENCFF370OUE | ENCFF370OUE.bed | bed (peaks) | peaks | 40.7 KB | link | ||
| ENCFF910BCQ | ENCFF910BCQ.bed | bed (peaks) | peaks | 223.8 KB | link | ||
| ENCFF083JEO | ENCFF083JEO.fastq | fastq (reads) | reads | 270.9 MB | link | ||
| ENCFF161YRQ | ENCFF161YRQ.fastq | fastq (reads) | reads | 379.0 MB | link | ||
| ENCFF235WCJ | ENCFF235WCJ.fastq | fastq (reads) | reads | 249.1 MB | link | ||
| ENCFF304NRR | ENCFF304NRR.fastq | fastq (reads) | reads | 244.9 MB | link | ||
| ENCFF366SWO | ENCFF366SWO.fastq | fastq (reads) | reads | 340.5 MB | link | ||
| ENCFF266NJN | ENCFF266NJN.tsv | tsv (enrichment) | enrichment | 14.8 KB | link | ||
| ENCFF380JJG | ENCFF380JJG.tsv | tsv (enrichment) | enrichment | 244.0 KB | link | ||
| ENCFF592FMJ | ENCFF592FMJ.tsv | tsv (enrichment) | enrichment | 60.0 KB | link | ||
| ENCFF437UNW | ENCFF437UNW.tsv | tsv (library fraction) | library fraction | 17.8 KB | link | ||
| ENCFF660VBL | ENCFF660VBL.tsv | tsv (library fraction) | library fraction | 75.3 KB | link | ||
| ENCFF762UHX | ENCFF762UHX.tsv | tsv (library fraction) | library fraction | 313.0 KB | link |