ENCSR915BDY
ENCSR ENCODERNA Bind-n-Seq (RBNS) pulldown experiment against KHSRP
Experiment Types:
RNA Bind-n-Seq
Status:
released
Contact:
Chris Burge, MIT
Summary
RNA Bind-n-Seq of KHSRP in
Overall Design
RNA Bind-n-Seq (RBNS) pulldown experiment against KHSRP
Analysis
View Data Processing
Analysis page is available for ENCSR915BDY.
Dataset Citations (1)
A large-scale binding and functional map of human RNA-binding proteins.
PMID 32728246
· 2020
· Nature
Eric L Van Nostrand, Peter Freese, Gabriel A Pratt, Xiaofeng Wang, Xintao Wei, Rui Xiao, Steven M Blue, Jia-Yu Chen, Neal A L Cody, Daniel Dominguez, Sara Olson, Balaji Sundararaman, Lijun Zhan, Cassandra Bazile, Louis Philip Benoit Bouvrette, Julie Bergalet, Michael O Duff, Keri E Garcia, Chelsea Gelboin-Burkhart, Myles Hochman, Nicole J Lambert, Hairi Li, Michael P McGurk, Thai B Nguyen, Tsultrim Palden, Ines Rabano, Shashank Sathe, Rebecca Stanton, Amanda Su, Ruth Wang, Brian A Yee, Bing Zhou, Ashley L Louie, Stefan Aigner, Xiang-Dong Fu, Eric Lécuyer, Christopher B Burge, Brenton R Graveley, Gene W Yeo
ENCODE Metadata
Total file size: 2.9 GBFiles: 15
Unique ENC file IDs: 15
File Formats
tsv (8)
fastq (5)
bed (2)
Output types (4)
reads (5)
enrichment (4)
library fraction (4)
peaks (2)
Linked Publications (1)
Data Files (15)
| Accession | File Name | Stored Type | Output Type | Mapping Assembly | Size | Download | |
|---|---|---|---|---|---|---|---|
| ENCFF464UVC | ENCFF464UVC.bed | bed (peaks); assembly: hg19 | peaks | hg19 | 408.1 KB | link | |
| ENCFF712ZAK | ENCFF712ZAK.bed | bed (peaks); assembly: hg19 | peaks | hg19 | 1.8 MB | link | |
| ENCFF385FOT | ENCFF385FOT.fastq | fastq (reads) | reads | 541.3 MB | link | ||
| ENCFF487JGC | ENCFF487JGC.fastq | fastq (reads) | reads | 451.3 MB | link | ||
| ENCFF608BCN | ENCFF608BCN.fastq | fastq (reads) | reads | 619.0 MB | link | ||
| ENCFF641RTT | ENCFF641RTT.fastq | fastq (reads) | reads | 514.0 MB | link | ||
| ENCFF778ABV | ENCFF778ABV.fastq | fastq (reads) | reads | 835.8 MB | link | ||
| ENCFF356DWW | ENCFF356DWW.tsv | tsv (enrichment) | enrichment | 168.0 KB | link | ||
| ENCFF757NUT | ENCFF757NUT.tsv | tsv (enrichment) | enrichment | 688.0 KB | link | ||
| ENCFF865YVO | ENCFF865YVO.tsv | tsv (enrichment) | enrichment | 41.0 KB | link | ||
| ENCFF924TSO | ENCFF924TSO.tsv | tsv (enrichment) | enrichment | 10.0 KB | link | ||
| ENCFF402TCU | ENCFF402TCU.tsv | tsv (library fraction) | library fraction | 63.9 KB | link | ||
| ENCFF708KEI | ENCFF708KEI.tsv | tsv (library fraction) | library fraction | 265.2 KB | link | ||
| ENCFF739ZKH | ENCFF739ZKH.tsv | tsv (library fraction) | library fraction | 1.1 MB | link | ||
| ENCFF931GAS | ENCFF931GAS.tsv | tsv (library fraction) | library fraction | 15.2 KB | link |