ENCSR697VZN
ENCSR ENCODERNA Bind-n-Seq (RBNS) pulldown experiment against FUBP3
Experiment Types:
RNA Bind-n-Seq
Status:
released
Contact:
Chris Burge, MIT
Summary
RNA Bind-n-Seq of FUBP3 in
Overall Design
RNA Bind-n-Seq (RBNS) pulldown experiment against FUBP3
Analysis
View Data Processing
Analysis page is available for ENCSR697VZN.
Dataset Citations (1)
A large-scale binding and functional map of human RNA-binding proteins.
PMID 32728246
· 2020
· Nature
Eric L Van Nostrand, Peter Freese, Gabriel A Pratt, Xiaofeng Wang, Xintao Wei, Rui Xiao, Steven M Blue, Jia-Yu Chen, Neal A L Cody, Daniel Dominguez, Sara Olson, Balaji Sundararaman, Lijun Zhan, Cassandra Bazile, Louis Philip Benoit Bouvrette, Julie Bergalet, Michael O Duff, Keri E Garcia, Chelsea Gelboin-Burkhart, Myles Hochman, Nicole J Lambert, Hairi Li, Michael P McGurk, Thai B Nguyen, Tsultrim Palden, Ines Rabano, Shashank Sathe, Rebecca Stanton, Amanda Su, Ruth Wang, Brian A Yee, Bing Zhou, Ashley L Louie, Stefan Aigner, Xiang-Dong Fu, Eric Lécuyer, Christopher B Burge, Brenton R Graveley, Gene W Yeo
ENCODE Metadata
Total file size: 1.8 GBFiles: 14
Unique ENC file IDs: 14
File Formats
tsv (8)
fastq (5)
bed (1)
Output types (4)
reads (5)
enrichment (4)
library fraction (4)
peaks (1)
Linked Publications (1)
Data Files (14)
| Accession | File Name | Stored Type | Output Type | Mapping Assembly | Size | Download | |
|---|---|---|---|---|---|---|---|
| ENCFF325TXM | ENCFF325TXM.bed | bed (peaks) | peaks | 211.4 KB | link | ||
| ENCFF012DBP | ENCFF012DBP.fastq | fastq (reads) | reads | 300.2 MB | link | ||
| ENCFF071WGX | ENCFF071WGX.fastq | fastq (reads) | reads | 488.5 MB | link | ||
| ENCFF130HUZ | ENCFF130HUZ.fastq | fastq (reads) | reads | 328.9 MB | link | ||
| ENCFF146YJF | ENCFF146YJF.fastq | fastq (reads) | reads | 313.1 MB | link | ||
| ENCFF626IFM | ENCFF626IFM.fastq | fastq (reads) | reads | 458.1 MB | link | ||
| ENCFF415RLT | ENCFF415RLT.tsv | tsv (enrichment) | enrichment | 10.0 KB | link | ||
| ENCFF610YNE | ENCFF610YNE.tsv | tsv (enrichment) | enrichment | 688.0 KB | link | ||
| ENCFF826BAQ | ENCFF826BAQ.tsv | tsv (enrichment) | enrichment | 41.0 KB | link | ||
| ENCFF891TDY | ENCFF891TDY.tsv | tsv (enrichment) | enrichment | 168.0 KB | link | ||
| ENCFF229MQG | ENCFF229MQG.tsv | tsv (library fraction) | library fraction | 64.4 KB | link | ||
| ENCFF340APJ | ENCFF340APJ.tsv | tsv (library fraction) | library fraction | 264.8 KB | link | ||
| ENCFF771NBD | ENCFF771NBD.tsv | tsv (library fraction) | library fraction | 15.5 KB | link | ||
| ENCFF901VSN | ENCFF901VSN.tsv | tsv (library fraction) | library fraction | 1.1 MB | link |