ENCSR466JPT
ENCSR ENCODERNA Bind-n-Seq (RBNS) pulldown experiment against TARDBP
Experiment Types:
RNA Bind-n-Seq
Status:
released
Contact:
Chris Burge, MIT
Summary
RNA Bind-n-Seq of TARDBP in
Overall Design
RNA Bind-n-Seq (RBNS) pulldown experiment against TARDBP
Analysis
View Data Processing
Analysis page is available for ENCSR466JPT.
Dataset Citations (1)
A large-scale binding and functional map of human RNA-binding proteins.
PMID 32728246
· 2020
· Nature
Eric L Van Nostrand, Peter Freese, Gabriel A Pratt, Xiaofeng Wang, Xintao Wei, Rui Xiao, Steven M Blue, Jia-Yu Chen, Neal A L Cody, Daniel Dominguez, Sara Olson, Balaji Sundararaman, Lijun Zhan, Cassandra Bazile, Louis Philip Benoit Bouvrette, Julie Bergalet, Michael O Duff, Keri E Garcia, Chelsea Gelboin-Burkhart, Myles Hochman, Nicole J Lambert, Hairi Li, Michael P McGurk, Thai B Nguyen, Tsultrim Palden, Ines Rabano, Shashank Sathe, Rebecca Stanton, Amanda Su, Ruth Wang, Brian A Yee, Bing Zhou, Ashley L Louie, Stefan Aigner, Xiang-Dong Fu, Eric Lécuyer, Christopher B Burge, Brenton R Graveley, Gene W Yeo
ENCODE Metadata
Total file size: 2.6 GBFiles: 14
Unique ENC file IDs: 14
File Formats
tsv (8)
fastq (5)
bed (1)
Output types (4)
reads (5)
enrichment (4)
library fraction (4)
peaks (1)
Linked Publications (1)
Data Files (14)
| Accession | File Name | Stored Type | Output Type | Mapping Assembly | Size | Download | |
|---|---|---|---|---|---|---|---|
| ENCFF878HMC | ENCFF878HMC.bed | bed (peaks) | peaks | 630.4 KB | link | ||
| ENCFF023PUC | ENCFF023PUC.fastq | fastq (reads) | reads | 401.5 MB | link | ||
| ENCFF044GED | ENCFF044GED.fastq | fastq (reads) | reads | 435.0 MB | link | ||
| ENCFF147IXH | ENCFF147IXH.fastq | fastq (reads) | reads | 1.0 GB | link | ||
| ENCFF552GCD | ENCFF552GCD.fastq | fastq (reads) | reads | 371.1 MB | link | ||
| ENCFF864BPI | ENCFF864BPI.fastq | fastq (reads) | reads | 388.5 MB | link | ||
| ENCFF022PDN | ENCFF022PDN.tsv | tsv (enrichment) | enrichment | 41.0 KB | link | ||
| ENCFF484TAR | ENCFF484TAR.tsv | tsv (enrichment) | enrichment | 168.0 KB | link | ||
| ENCFF769CCM | ENCFF769CCM.tsv | tsv (enrichment) | enrichment | 688.0 KB | link | ||
| ENCFF979SDN | ENCFF979SDN.tsv | tsv (enrichment) | enrichment | 10.0 KB | link | ||
| ENCFF059ZUY | ENCFF059ZUY.tsv | tsv (library fraction) | library fraction | 63.8 KB | link | ||
| ENCFF363GNB | ENCFF363GNB.tsv | tsv (library fraction) | library fraction | 1.1 MB | link | ||
| ENCFF422VRS | ENCFF422VRS.tsv | tsv (library fraction) | library fraction | 15.1 KB | link | ||
| ENCFF652LRF | ENCFF652LRF.tsv | tsv (library fraction) | library fraction | 265.4 KB | link |