ENCSR741ZPT
ENCSR ENCODERNA Bind-n-Seq (RBNS) pulldown experiment against PTBP3
Experiment Types:
RNA Bind-n-Seq
Status:
released
Contact:
Chris Burge, MIT
Summary
RNA Bind-n-Seq of PTBP3 in
Overall Design
RNA Bind-n-Seq (RBNS) pulldown experiment against PTBP3
Analysis
View Data Processing
Analysis page is available for ENCSR741ZPT.
Dataset Citations (1)
A large-scale binding and functional map of human RNA-binding proteins.
PMID 32728246
· 2020
· Nature
Eric L Van Nostrand, Peter Freese, Gabriel A Pratt, Xiaofeng Wang, Xintao Wei, Rui Xiao, Steven M Blue, Jia-Yu Chen, Neal A L Cody, Daniel Dominguez, Sara Olson, Balaji Sundararaman, Lijun Zhan, Cassandra Bazile, Louis Philip Benoit Bouvrette, Julie Bergalet, Michael O Duff, Keri E Garcia, Chelsea Gelboin-Burkhart, Myles Hochman, Nicole J Lambert, Hairi Li, Michael P McGurk, Thai B Nguyen, Tsultrim Palden, Ines Rabano, Shashank Sathe, Rebecca Stanton, Amanda Su, Ruth Wang, Brian A Yee, Bing Zhou, Ashley L Louie, Stefan Aigner, Xiang-Dong Fu, Eric Lécuyer, Christopher B Burge, Brenton R Graveley, Gene W Yeo
ENCODE Metadata
Total file size: 8.4 GBFiles: 14
Unique ENC file IDs: 14
File Formats
fastq (6)
tsv (6)
bed (2)
Output types (4)
reads (6)
enrichment (3)
library fraction (3)
peaks (2)
Linked Publications (1)
Data Files (14)
| Accession | File Name | Stored Type | Output Type | Mapping Assembly | Size | Download | |
|---|---|---|---|---|---|---|---|
| ENCFF817UKQ | ENCFF817UKQ.bed | bed (peaks) | peaks | 667.7 KB | link | ||
| ENCFF988VZT | ENCFF988VZT.bed | bed (peaks) | peaks | 789.4 KB | link | ||
| ENCFF002BYJ | ENCFF002BYJ.fastq | fastq (reads) | reads | 1.2 GB | link | ||
| ENCFF002BYK | ENCFF002BYK.fastq | fastq (reads) | reads | 1.1 GB | link | ||
| ENCFF002BYL | ENCFF002BYL.fastq | fastq (reads) | reads | 1.4 GB | link | ||
| ENCFF002BYM | ENCFF002BYM.fastq | fastq (reads) | reads | 2.0 GB | link | ||
| ENCFF002BYO | ENCFF002BYO.fastq | fastq (reads) | reads | 1.5 GB | link | ||
| ENCFF002BYP | ENCFF002BYP.fastq | fastq (reads) | reads | 1.3 GB | link | ||
| ENCFF002EVE | ENCFF002EVE.tsv | tsv (enrichment) | enrichment | 244.0 KB | link | ||
| ENCFF002EVF | ENCFF002EVF.tsv | tsv (enrichment) | enrichment | 992.0 KB | link | ||
| ENCFF002EVI | ENCFF002EVI.tsv | tsv (enrichment) | enrichment | 60.0 KB | link | ||
| ENCFF002EVG | ENCFF002EVG.tsv | tsv (library fraction) | library fraction | 311.6 KB | link | ||
| ENCFF002EVH | ENCFF002EVH.tsv | tsv (library fraction) | library fraction | 1.2 MB | link | ||
| ENCFF002EVJ | ENCFF002EVJ.tsv | tsv (library fraction) | library fraction | 76.1 KB | link |