ENCSR575QYE
ENCSR ENCODERNA Bind-n-Seq (RBNS) pulldown experiment against KHDRBS2
Experiment Types:
RNA Bind-n-Seq
Status:
released
Contact:
Chris Burge, MIT
Summary
RNA Bind-n-Seq of KHDRBS2 in
Overall Design
RNA Bind-n-Seq (RBNS) pulldown experiment against KHDRBS2
Analysis
View Data Processing
Analysis page is available for ENCSR575QYE.
Dataset Citations (1)
A large-scale binding and functional map of human RNA-binding proteins.
PMID 32728246
· 2020
· Nature
Eric L Van Nostrand, Peter Freese, Gabriel A Pratt, Xiaofeng Wang, Xintao Wei, Rui Xiao, Steven M Blue, Jia-Yu Chen, Neal A L Cody, Daniel Dominguez, Sara Olson, Balaji Sundararaman, Lijun Zhan, Cassandra Bazile, Louis Philip Benoit Bouvrette, Julie Bergalet, Michael O Duff, Keri E Garcia, Chelsea Gelboin-Burkhart, Myles Hochman, Nicole J Lambert, Hairi Li, Michael P McGurk, Thai B Nguyen, Tsultrim Palden, Ines Rabano, Shashank Sathe, Rebecca Stanton, Amanda Su, Ruth Wang, Brian A Yee, Bing Zhou, Ashley L Louie, Stefan Aigner, Xiang-Dong Fu, Eric Lécuyer, Christopher B Burge, Brenton R Graveley, Gene W Yeo
ENCODE Metadata
Total file size: 3.0 GBFiles: 15
Unique ENC file IDs: 15
File Formats
tsv (9)
fastq (5)
bed (1)
Output types (4)
enrichment (5)
reads (5)
library fraction (4)
peaks (1)
Linked Publications (1)
Data Files (15)
| Accession | File Name | Stored Type | Output Type | Mapping Assembly | Size | Download | |
|---|---|---|---|---|---|---|---|
| ENCFF715SQI | ENCFF715SQI.bed | bed (peaks) | peaks | 109.9 KB | link | ||
| ENCFF234WAZ | ENCFF234WAZ.fastq | fastq (reads) | reads | 657.5 MB | link | ||
| ENCFF276YSZ | ENCFF276YSZ.fastq | fastq (reads) | reads | 580.9 MB | link | ||
| ENCFF725OYS | ENCFF725OYS.fastq | fastq (reads) | reads | 609.4 MB | link | ||
| ENCFF803LHT | ENCFF803LHT.fastq | fastq (reads) | reads | 615.9 MB | link | ||
| ENCFF903TJA | ENCFF903TJA.fastq | fastq (reads) | reads | 629.4 MB | link | ||
| ENCFF083OIG | ENCFF083OIG.tsv | tsv (enrichment) | enrichment | 168.0 KB | link | ||
| ENCFF193FIH | ENCFF193FIH.tsv | tsv (enrichment) | enrichment | 386.0 B | link | ||
| ENCFF388TRM | ENCFF388TRM.tsv | tsv (enrichment) | enrichment | 41.0 KB | link | ||
| ENCFF456XDP | ENCFF456XDP.tsv | tsv (enrichment) | enrichment | 10.0 KB | link | ||
| ENCFF465ZHS | ENCFF465ZHS.tsv | tsv (enrichment) | enrichment | 688.1 KB | link | ||
| ENCFF026GXV | ENCFF026GXV.tsv | tsv (library fraction) | library fraction | 265.2 KB | link | ||
| ENCFF192FTT | ENCFF192FTT.tsv | tsv (library fraction) | library fraction | 64.5 KB | link | ||
| ENCFF193NAZ | ENCFF193NAZ.tsv | tsv (library fraction) | library fraction | 1.1 MB | link | ||
| ENCFF859PTL | ENCFF859PTL.tsv | tsv (library fraction) | library fraction | 15.4 KB | link |