ENCSR954TYO
ENCSR ENCODERNA Bind-n-Seq (RBNS) pulldown experiment against HNRNPL
Experiment Types:
RNA Bind-n-Seq
Status:
released
Contact:
Chris Burge, MIT
Summary
RNA Bind-n-Seq of HNRNPL in
Overall Design
RNA Bind-n-Seq (RBNS) pulldown experiment against HNRNPL
Analysis
View Data Processing
Analysis page is available for ENCSR954TYO.
Dataset Citations (1)
A large-scale binding and functional map of human RNA-binding proteins.
PMID 32728246
· 2020
· Nature
Eric L Van Nostrand, Peter Freese, Gabriel A Pratt, Xiaofeng Wang, Xintao Wei, Rui Xiao, Steven M Blue, Jia-Yu Chen, Neal A L Cody, Daniel Dominguez, Sara Olson, Balaji Sundararaman, Lijun Zhan, Cassandra Bazile, Louis Philip Benoit Bouvrette, Julie Bergalet, Michael O Duff, Keri E Garcia, Chelsea Gelboin-Burkhart, Myles Hochman, Nicole J Lambert, Hairi Li, Michael P McGurk, Thai B Nguyen, Tsultrim Palden, Ines Rabano, Shashank Sathe, Rebecca Stanton, Amanda Su, Ruth Wang, Brian A Yee, Bing Zhou, Ashley L Louie, Stefan Aigner, Xiang-Dong Fu, Eric Lécuyer, Christopher B Burge, Brenton R Graveley, Gene W Yeo
ENCODE Metadata
Total file size: 2.7 GBFiles: 15
Unique ENC file IDs: 15
File Formats
tsv (8)
fastq (5)
bed (2)
Output types (4)
reads (5)
enrichment (4)
library fraction (4)
peaks (2)
Linked Publications (1)
Data Files (15)
| Accession | File Name | Stored Type | Output Type | Mapping Assembly | Size | Download | |
|---|---|---|---|---|---|---|---|
| ENCFF117QKP | ENCFF117QKP.bed | bed (peaks); assembly: hg19 | peaks | hg19 | 725.4 KB | link | |
| ENCFF134FRX | ENCFF134FRX.bed | bed (peaks); assembly: hg19 | peaks | hg19 | 465.1 KB | link | |
| ENCFF004ECZ | ENCFF004ECZ.fastq | fastq (reads) | reads | 537.9 MB | link | ||
| ENCFF066AFW | ENCFF066AFW.fastq | fastq (reads) | reads | 720.2 MB | link | ||
| ENCFF086FCD | ENCFF086FCD.fastq | fastq (reads) | reads | 439.2 MB | link | ||
| ENCFF407TKA | ENCFF407TKA.fastq | fastq (reads) | reads | 457.1 MB | link | ||
| ENCFF929YDP | ENCFF929YDP.fastq | fastq (reads) | reads | 570.5 MB | link | ||
| ENCFF029EII | ENCFF029EII.tsv | tsv (enrichment) | enrichment | 168.0 KB | link | ||
| ENCFF262PXW | ENCFF262PXW.tsv | tsv (enrichment) | enrichment | 10.0 KB | link | ||
| ENCFF422OAC | ENCFF422OAC.tsv | tsv (enrichment) | enrichment | 41.0 KB | link | ||
| ENCFF941VVI | ENCFF941VVI.tsv | tsv (enrichment) | enrichment | 688.0 KB | link | ||
| ENCFF035BST | ENCFF035BST.tsv | tsv (library fraction) | library fraction | 265.1 KB | link | ||
| ENCFF044BEP | ENCFF044BEP.tsv | tsv (library fraction) | library fraction | 64.1 KB | link | ||
| ENCFF410KFS | ENCFF410KFS.tsv | tsv (library fraction) | library fraction | 1.1 MB | link | ||
| ENCFF640IUJ | ENCFF640IUJ.tsv | tsv (library fraction) | library fraction | 15.4 KB | link |