ENCSR845GNW
ENCSR ENCODERNA Bind-n-Seq (RBNS) pulldown experiment against PUM1
Experiment Types:
RNA Bind-n-Seq
Status:
released
Contact:
Chris Burge, MIT
Summary
RNA Bind-n-Seq of PUM1 in
Overall Design
RNA Bind-n-Seq (RBNS) pulldown experiment against PUM1
Analysis
View Data Processing
Analysis page is available for ENCSR845GNW.
Dataset Citations (1)
A large-scale binding and functional map of human RNA-binding proteins.
PMID 32728246
· 2020
· Nature
Eric L Van Nostrand, Peter Freese, Gabriel A Pratt, Xiaofeng Wang, Xintao Wei, Rui Xiao, Steven M Blue, Jia-Yu Chen, Neal A L Cody, Daniel Dominguez, Sara Olson, Balaji Sundararaman, Lijun Zhan, Cassandra Bazile, Louis Philip Benoit Bouvrette, Julie Bergalet, Michael O Duff, Keri E Garcia, Chelsea Gelboin-Burkhart, Myles Hochman, Nicole J Lambert, Hairi Li, Michael P McGurk, Thai B Nguyen, Tsultrim Palden, Ines Rabano, Shashank Sathe, Rebecca Stanton, Amanda Su, Ruth Wang, Brian A Yee, Bing Zhou, Ashley L Louie, Stefan Aigner, Xiang-Dong Fu, Eric Lécuyer, Christopher B Burge, Brenton R Graveley, Gene W Yeo
ENCODE Metadata
Total file size: 1.3 GBFiles: 15
Unique ENC file IDs: 15
File Formats
tsv (8)
fastq (5)
bed (2)
Output types (4)
reads (5)
enrichment (4)
library fraction (4)
peaks (2)
Linked Publications (1)
Data Files (15)
| Accession | File Name | Stored Type | Output Type | Mapping Assembly | Size | Download | |
|---|---|---|---|---|---|---|---|
| ENCFF126IQM | ENCFF126IQM.bed | bed (peaks) | peaks | 418.0 KB | link | ||
| ENCFF648TBV | ENCFF648TBV.bed | bed (peaks) | peaks | 167.2 KB | link | ||
| ENCFF090QVU | ENCFF090QVU.fastq | fastq (reads) | reads | 270.7 MB | link | ||
| ENCFF266PHU | ENCFF266PHU.fastq | fastq (reads) | reads | 287.5 MB | link | ||
| ENCFF345UJY | ENCFF345UJY.fastq | fastq (reads) | reads | 299.7 MB | link | ||
| ENCFF574TBN | ENCFF574TBN.fastq | fastq (reads) | reads | 212.6 MB | link | ||
| ENCFF894MLG | ENCFF894MLG.fastq | fastq (reads) | reads | 270.8 MB | link | ||
| ENCFF031GWM | ENCFF031GWM.tsv | tsv (enrichment) | enrichment | 688.1 KB | link | ||
| ENCFF056YLH | ENCFF056YLH.tsv | tsv (enrichment) | enrichment | 41.0 KB | link | ||
| ENCFF519SMF | ENCFF519SMF.tsv | tsv (enrichment) | enrichment | 10.0 KB | link | ||
| ENCFF966LVC | ENCFF966LVC.tsv | tsv (enrichment) | enrichment | 168.0 KB | link | ||
| ENCFF400IBT | ENCFF400IBT.tsv | tsv (library fraction) | library fraction | 1.1 MB | link | ||
| ENCFF537LES | ENCFF537LES.tsv | tsv (library fraction) | library fraction | 265.1 KB | link | ||
| ENCFF704EBI | ENCFF704EBI.tsv | tsv (library fraction) | library fraction | 64.4 KB | link | ||
| ENCFF955ZGE | ENCFF955ZGE.tsv | tsv (library fraction) | library fraction | 15.3 KB | link |