ENCSR583NVI
ENCSR ENCODERNA Bind-n-Seq (RBNS) pulldown experiment against KHDRBS3
Experiment Types:
RNA Bind-n-Seq
Status:
released
Contact:
Chris Burge, MIT
Summary
RNA Bind-n-Seq of KHDRBS3 in
Overall Design
RNA Bind-n-Seq (RBNS) pulldown experiment against KHDRBS3
Analysis
View Data Processing
Analysis page is available for ENCSR583NVI.
Dataset Citations (1)
A large-scale binding and functional map of human RNA-binding proteins.
PMID 32728246
· 2020
· Nature
Eric L Van Nostrand, Peter Freese, Gabriel A Pratt, Xiaofeng Wang, Xintao Wei, Rui Xiao, Steven M Blue, Jia-Yu Chen, Neal A L Cody, Daniel Dominguez, Sara Olson, Balaji Sundararaman, Lijun Zhan, Cassandra Bazile, Louis Philip Benoit Bouvrette, Julie Bergalet, Michael O Duff, Keri E Garcia, Chelsea Gelboin-Burkhart, Myles Hochman, Nicole J Lambert, Hairi Li, Michael P McGurk, Thai B Nguyen, Tsultrim Palden, Ines Rabano, Shashank Sathe, Rebecca Stanton, Amanda Su, Ruth Wang, Brian A Yee, Bing Zhou, Ashley L Louie, Stefan Aigner, Xiang-Dong Fu, Eric Lécuyer, Christopher B Burge, Brenton R Graveley, Gene W Yeo
ENCODE Metadata
Total file size: 2.8 GBFiles: 12
Unique ENC file IDs: 12
File Formats
tsv (8)
fastq (4)
Output types (3)
enrichment (4)
library fraction (4)
reads (4)
Linked Publications (1)
Data Files (12)
| Accession | File Name | Stored Type | Output Type | Mapping Assembly | Size | Download | |
|---|---|---|---|---|---|---|---|
| ENCFF118MEC | ENCFF118MEC.fastq | fastq (reads) | reads | 555.6 MB | link | ||
| ENCFF612DYP | ENCFF612DYP.fastq | fastq (reads) | reads | 1.3 GB | link | ||
| ENCFF793XRU | ENCFF793XRU.fastq | fastq (reads) | reads | 558.8 MB | link | ||
| ENCFF993IHW | ENCFF993IHW.fastq | fastq (reads) | reads | 378.4 MB | link | ||
| ENCFF324JGS | ENCFF324JGS.tsv | tsv (enrichment) | enrichment | 140.0 KB | link | ||
| ENCFF378CHX | ENCFF378CHX.tsv | tsv (enrichment) | enrichment | 34.0 KB | link | ||
| ENCFF668MVP | ENCFF668MVP.tsv | tsv (enrichment) | enrichment | 8.3 KB | link | ||
| ENCFF709CRG | ENCFF709CRG.tsv | tsv (enrichment) | enrichment | 576.0 KB | link | ||
| ENCFF130WFJ | ENCFF130WFJ.tsv | tsv (library fraction) | library fraction | 12.4 KB | link | ||
| ENCFF223NMR | ENCFF223NMR.tsv | tsv (library fraction) | library fraction | 52.5 KB | link | ||
| ENCFF667QWI | ENCFF667QWI.tsv | tsv (library fraction) | library fraction | 888.7 KB | link | ||
| ENCFF905COP | ENCFF905COP.tsv | tsv (library fraction) | library fraction | 217.8 KB | link |