ENCSR945NSF
ENCSR ENCODEPCBP2 ChIP-seq on HepG2
Organism:
Homo sapiens
Experiment Types:
TF ChIP-seq
Status:
released
Contact:
Xiang-Dong Fu, UCSD
Summary
TF ChIP-seq of PCBP2 in Homo sapiens HepG2
Overall Design
PCBP2 ChIP-seq on HepG2
Analysis
View Data Processing
Analysis page is available for ENCSR945NSF.
Dataset Citations (1)
A large-scale binding and functional map of human RNA-binding proteins.
PMID 32728246
· 2020
· Nature
Eric L Van Nostrand, Peter Freese, Gabriel A Pratt, Xiaofeng Wang, Xintao Wei, Rui Xiao, Steven M Blue, Jia-Yu Chen, Neal A L Cody, Daniel Dominguez, Sara Olson, Balaji Sundararaman, Lijun Zhan, Cassandra Bazile, Louis Philip Benoit Bouvrette, Julie Bergalet, Michael O Duff, Keri E Garcia, Chelsea Gelboin-Burkhart, Myles Hochman, Nicole J Lambert, Hairi Li, Michael P McGurk, Thai B Nguyen, Tsultrim Palden, Ines Rabano, Shashank Sathe, Rebecca Stanton, Amanda Su, Ruth Wang, Brian A Yee, Bing Zhou, Ashley L Louie, Stefan Aigner, Xiang-Dong Fu, Eric Lécuyer, Christopher B Burge, Brenton R Graveley, Gene W Yeo
ENCODE Metadata
Total file size: 20.5 GBAssay: TF ChIP-seq
Target: PCBP2
Biosample: Homo sapiens HepG2
Files: 44
Unique ENC file IDs: 44
File Formats
bigWig (12)
bed (10)
bigBed (10)
bam (8)
fastq (4)
Output types (8)
peaks and background as input for IDR (12)
fold change over control (6)
signal p-value (6)
alignments (4)
conservative IDR thresholded peaks (4)
optimal IDR thresholded peaks (4)
reads (4)
unfiltered alignments (4)
Linked Publications (1)
Data Files (44)
| Accession | File Name | Stored Type | Output Type | Mapping Assembly | Size | Download | |
|---|---|---|---|---|---|---|---|
| ENCFF178TOV | ENCFF178TOV.bam | bam (alignments); assembly: GRCh38 | alignments | GRCh38 | 529.8 MB | link | |
| ENCFF479DBP | ENCFF479DBP.bam | bam (alignments); assembly: GRCh38 | alignments | GRCh38 | 499.9 MB | link | |
| ENCFF366PYR | ENCFF366PYR.bam | bam (alignments); assembly: hg19 | alignments | hg19 | 530.4 MB | link | |
| ENCFF910NGM | ENCFF910NGM.bam | bam (alignments); assembly: hg19 | alignments | hg19 | 500.5 MB | link | |
| ENCFF616NXH | ENCFF616NXH.bam | bam (unfiltered alignments); assembly: GRCh38 | unfiltered alignments | GRCh38 | 1.9 GB | link | |
| ENCFF629GVZ | ENCFF629GVZ.bam | bam (unfiltered alignments); assembly: GRCh38 | unfiltered alignments | GRCh38 | 1.8 GB | link | |
| ENCFF025TLA | ENCFF025TLA.bam | bam (unfiltered alignments); assembly: hg19 | unfiltered alignments | hg19 | 1.9 GB | link | |
| ENCFF910CBX | ENCFF910CBX.bam | bam (unfiltered alignments); assembly: hg19 | unfiltered alignments | hg19 | 1.8 GB | link | |
| ENCFF057DYX | ENCFF057DYX.bed | bed (conservative IDR thresholded peaks); assembly: GRCh38 | conservative IDR thresholded peaks | GRCh38 | 63.4 KB | link | |
| ENCFF882EOS | ENCFF882EOS.bed | bed (conservative IDR thresholded peaks); assembly: hg19 | conservative IDR thresholded peaks | hg19 | 68.1 KB | link | |
| ENCFF642XRH | ENCFF642XRH.bed | bed (optimal IDR thresholded peaks); assembly: GRCh38 | optimal IDR thresholded peaks | GRCh38 | 70.2 KB | link | |
| ENCFF460OWI | ENCFF460OWI.bed | bed (optimal IDR thresholded peaks); assembly: hg19 | optimal IDR thresholded peaks | hg19 | 71.7 KB | link | |
| ENCFF308JXP | ENCFF308JXP.bed | bed (peaks and background as input for IDR); assembly: GRCh38 | peaks and background as input for IDR | GRCh38 | 6.1 MB | link | |
| ENCFF433SRS | ENCFF433SRS.bed | bed (peaks and background as input for IDR); assembly: GRCh38 | peaks and background as input for IDR | GRCh38 | 5.0 MB | link | |
| ENCFF547YIN | ENCFF547YIN.bed | bed (peaks and background as input for IDR); assembly: GRCh38 | peaks and background as input for IDR | GRCh38 | 5.1 MB | link | |
| ENCFF155AMR | ENCFF155AMR.bed | bed (peaks and background as input for IDR); assembly: hg19 | peaks and background as input for IDR | hg19 | 5.0 MB | link | |
| ENCFF174MCF | ENCFF174MCF.bed | bed (peaks and background as input for IDR); assembly: hg19 | peaks and background as input for IDR | hg19 | 5.1 MB | link | |
| ENCFF574KTG | ENCFF574KTG.bed | bed (peaks and background as input for IDR); assembly: hg19 | peaks and background as input for IDR | hg19 | 6.1 MB | link | |
| ENCFF476UCM | ENCFF476UCM.bigBed | bigBed (conservative IDR thresholded peaks); assembly: GRCh38 | conservative IDR thresholded peaks | GRCh38 | 151.7 KB | link | |
| ENCFF043DMT | ENCFF043DMT.bigBed | bigBed (conservative IDR thresholded peaks); assembly: hg19 | conservative IDR thresholded peaks | hg19 | 186.0 KB | link | |
| ENCFF033VWK | ENCFF033VWK.bigBed | bigBed (optimal IDR thresholded peaks); assembly: GRCh38 | optimal IDR thresholded peaks | GRCh38 | 161.7 KB | link | |
| ENCFF068FIG | ENCFF068FIG.bigBed | bigBed (optimal IDR thresholded peaks); assembly: hg19 | optimal IDR thresholded peaks | hg19 | 191.5 KB | link | |
| ENCFF235GEZ | ENCFF235GEZ.bigBed | bigBed (peaks and background as input for IDR); assembly: GRCh38 | peaks and background as input for IDR | GRCh38 | 12.8 MB | link | |
| ENCFF336JMA | ENCFF336JMA.bigBed | bigBed (peaks and background as input for IDR); assembly: GRCh38 | peaks and background as input for IDR | GRCh38 | 10.6 MB | link | |
| ENCFF879NWR | ENCFF879NWR.bigBed | bigBed (peaks and background as input for IDR); assembly: GRCh38 | peaks and background as input for IDR | GRCh38 | 10.6 MB | link | |
| ENCFF047XOP | ENCFF047XOP.bigBed | bigBed (peaks and background as input for IDR); assembly: hg19 | peaks and background as input for IDR | hg19 | 10.6 MB | link | |
| ENCFF526LXS | ENCFF526LXS.bigBed | bigBed (peaks and background as input for IDR); assembly: hg19 | peaks and background as input for IDR | hg19 | 12.8 MB | link | |
| ENCFF616IMX | ENCFF616IMX.bigBed | bigBed (peaks and background as input for IDR); assembly: hg19 | peaks and background as input for IDR | hg19 | 10.5 MB | link | |
| ENCFF667WJG | ENCFF667WJG.bigWig | bigWig (fold change over control); assembly: GRCh38 | fold change over control | GRCh38 | 452.5 MB | link | |
| ENCFF707DIF | ENCFF707DIF.bigWig | bigWig (fold change over control); assembly: GRCh38 | fold change over control | GRCh38 | 710.2 MB | link | |
| ENCFF970PDE | ENCFF970PDE.bigWig | bigWig (fold change over control); assembly: GRCh38 | fold change over control | GRCh38 | 446.4 MB | link | |
| ENCFF215BZF | ENCFF215BZF.bigWig | bigWig (fold change over control); assembly: hg19 | fold change over control | hg19 | 444.0 MB | link | |
| ENCFF320TJQ | ENCFF320TJQ.bigWig | bigWig (fold change over control); assembly: hg19 | fold change over control | hg19 | 718.9 MB | link | |
| ENCFF376FRT | ENCFF376FRT.bigWig | bigWig (fold change over control); assembly: hg19 | fold change over control | hg19 | 461.8 MB | link | |
| ENCFF272PBW | ENCFF272PBW.bigWig | bigWig (signal p-value); assembly: GRCh38 | signal p-value | GRCh38 | 672.1 MB | link | |
| ENCFF487FNL | ENCFF487FNL.bigWig | bigWig (signal p-value); assembly: GRCh38 | signal p-value | GRCh38 | 795.1 MB | link | |
| ENCFF889WJX | ENCFF889WJX.bigWig | bigWig (signal p-value); assembly: GRCh38 | signal p-value | GRCh38 | 673.0 MB | link | |
| ENCFF110RBL | ENCFF110RBL.bigWig | bigWig (signal p-value); assembly: hg19 | signal p-value | hg19 | 682.5 MB | link | |
| ENCFF331BYR | ENCFF331BYR.bigWig | bigWig (signal p-value); assembly: hg19 | signal p-value | hg19 | 662.9 MB | link | |
| ENCFF966JON | ENCFF966JON.bigWig | bigWig (signal p-value); assembly: hg19 | signal p-value | hg19 | 730.8 MB | link | |
| ENCFF223XLR | ENCFF223XLR.fastq | fastq (reads) | reads | 1.2 GB | link | ||
| ENCFF238LLZ | ENCFF238LLZ.fastq | fastq (reads) | reads | 683.6 MB | link | ||
| ENCFF774WWF | ENCFF774WWF.fastq | fastq (reads) | reads | 718.7 MB | link | ||
| ENCFF915BDU | ENCFF915BDU.fastq | fastq (reads) | reads | 1.3 GB | link |