ENCSR539RTM
ENCSR ENCODERNA Bind-n-Seq (RBNS) pulldown experiment against PCBP1
Experiment Types:
RNA Bind-n-Seq
Status:
released
Contact:
Chris Burge, MIT
Summary
RNA Bind-n-Seq of PCBP1 in
Overall Design
RNA Bind-n-Seq (RBNS) pulldown experiment against PCBP1
Analysis
View Data Processing
Analysis page is available for ENCSR539RTM.
Dataset Citations (1)
A large-scale binding and functional map of human RNA-binding proteins.
PMID 32728246
· 2020
· Nature
Eric L Van Nostrand, Peter Freese, Gabriel A Pratt, Xiaofeng Wang, Xintao Wei, Rui Xiao, Steven M Blue, Jia-Yu Chen, Neal A L Cody, Daniel Dominguez, Sara Olson, Balaji Sundararaman, Lijun Zhan, Cassandra Bazile, Louis Philip Benoit Bouvrette, Julie Bergalet, Michael O Duff, Keri E Garcia, Chelsea Gelboin-Burkhart, Myles Hochman, Nicole J Lambert, Hairi Li, Michael P McGurk, Thai B Nguyen, Tsultrim Palden, Ines Rabano, Shashank Sathe, Rebecca Stanton, Amanda Su, Ruth Wang, Brian A Yee, Bing Zhou, Ashley L Louie, Stefan Aigner, Xiang-Dong Fu, Eric Lécuyer, Christopher B Burge, Brenton R Graveley, Gene W Yeo
ENCODE Metadata
Total file size: 2.0 GBFiles: 15
Unique ENC file IDs: 15
File Formats
tsv (8)
fastq (5)
bed (2)
Output types (4)
reads (5)
enrichment (4)
library fraction (4)
peaks (2)
Linked Publications (1)
Data Files (15)
| Accession | File Name | Stored Type | Output Type | Mapping Assembly | Size | Download | |
|---|---|---|---|---|---|---|---|
| ENCFF319TDW | ENCFF319TDW.bed | bed (peaks) | peaks | 169.9 KB | link | ||
| ENCFF544DRZ | ENCFF544DRZ.bed | bed (peaks) | peaks | 71.8 KB | link | ||
| ENCFF015VYZ | ENCFF015VYZ.fastq | fastq (reads) | reads | 276.5 MB | link | ||
| ENCFF111WYI | ENCFF111WYI.fastq | fastq (reads) | reads | 310.1 MB | link | ||
| ENCFF134JFO | ENCFF134JFO.fastq | fastq (reads) | reads | 397.7 MB | link | ||
| ENCFF965AGF | ENCFF965AGF.fastq | fastq (reads) | reads | 328.4 MB | link | ||
| ENCFF975PLP | ENCFF975PLP.fastq | fastq (reads) | reads | 702.3 MB | link | ||
| ENCFF268RKR | ENCFF268RKR.tsv | tsv (enrichment) | enrichment | 41.0 KB | link | ||
| ENCFF564LBJ | ENCFF564LBJ.tsv | tsv (enrichment) | enrichment | 168.0 KB | link | ||
| ENCFF669GAJ | ENCFF669GAJ.tsv | tsv (enrichment) | enrichment | 688.0 KB | link | ||
| ENCFF894ONZ | ENCFF894ONZ.tsv | tsv (enrichment) | enrichment | 10.0 KB | link | ||
| ENCFF153TFF | ENCFF153TFF.tsv | tsv (library fraction) | library fraction | 64.0 KB | link | ||
| ENCFF391AFQ | ENCFF391AFQ.tsv | tsv (library fraction) | library fraction | 1.1 MB | link | ||
| ENCFF488GYB | ENCFF488GYB.tsv | tsv (library fraction) | library fraction | 15.2 KB | link | ||
| ENCFF730IXM | ENCFF730IXM.tsv | tsv (library fraction) | library fraction | 265.1 KB | link |