ENCSR006TPX
ENCSR ENCODERNA Bind-n-Seq (RBNS) pulldown experiment against RBM22
Experiment Types:
RNA Bind-n-Seq
Status:
released
Contact:
Chris Burge, MIT
Summary
RNA Bind-n-Seq of RBM22 in
Overall Design
RNA Bind-n-Seq (RBNS) pulldown experiment against RBM22
Analysis
View Data Processing
Analysis page is available for ENCSR006TPX.
Dataset Citations (1)
A large-scale binding and functional map of human RNA-binding proteins.
PMID 32728246
· 2020
· Nature
Eric L Van Nostrand, Peter Freese, Gabriel A Pratt, Xiaofeng Wang, Xintao Wei, Rui Xiao, Steven M Blue, Jia-Yu Chen, Neal A L Cody, Daniel Dominguez, Sara Olson, Balaji Sundararaman, Lijun Zhan, Cassandra Bazile, Louis Philip Benoit Bouvrette, Julie Bergalet, Michael O Duff, Keri E Garcia, Chelsea Gelboin-Burkhart, Myles Hochman, Nicole J Lambert, Hairi Li, Michael P McGurk, Thai B Nguyen, Tsultrim Palden, Ines Rabano, Shashank Sathe, Rebecca Stanton, Amanda Su, Ruth Wang, Brian A Yee, Bing Zhou, Ashley L Louie, Stefan Aigner, Xiang-Dong Fu, Eric Lécuyer, Christopher B Burge, Brenton R Graveley, Gene W Yeo
ENCODE Metadata
Total file size: 3.1 GBFiles: 15
Unique ENC file IDs: 15
File Formats
tsv (8)
fastq (5)
bed (2)
Output types (4)
reads (5)
enrichment (4)
library fraction (4)
peaks (2)
Linked Publications (1)
Data Files (15)
| Accession | File Name | Stored Type | Output Type | Mapping Assembly | Size | Download | |
|---|---|---|---|---|---|---|---|
| ENCFF293KBP | ENCFF293KBP.bed | bed (peaks) | peaks | 115.7 KB | link | ||
| ENCFF864NMG | ENCFF864NMG.bed | bed (peaks) | peaks | 63.7 KB | link | ||
| ENCFF222JFA | ENCFF222JFA.fastq | fastq (reads) | reads | 499.2 MB | link | ||
| ENCFF518QQN | ENCFF518QQN.fastq | fastq (reads) | reads | 553.9 MB | link | ||
| ENCFF576DJF | ENCFF576DJF.fastq | fastq (reads) | reads | 729.8 MB | link | ||
| ENCFF745RRQ | ENCFF745RRQ.fastq | fastq (reads) | reads | 760.8 MB | link | ||
| ENCFF870LSB | ENCFF870LSB.fastq | fastq (reads) | reads | 622.2 MB | link | ||
| ENCFF106RWF | ENCFF106RWF.tsv | tsv (enrichment) | enrichment | 168.0 KB | link | ||
| ENCFF179SVM | ENCFF179SVM.tsv | tsv (enrichment) | enrichment | 10.0 KB | link | ||
| ENCFF581IOZ | ENCFF581IOZ.tsv | tsv (enrichment) | enrichment | 688.1 KB | link | ||
| ENCFF688EDA | ENCFF688EDA.tsv | tsv (enrichment) | enrichment | 41.0 KB | link | ||
| ENCFF488JCO | ENCFF488JCO.tsv | tsv (library fraction) | library fraction | 15.2 KB | link | ||
| ENCFF686ABH | ENCFF686ABH.tsv | tsv (library fraction) | library fraction | 63.9 KB | link | ||
| ENCFF708MRW | ENCFF708MRW.tsv | tsv (library fraction) | library fraction | 265.8 KB | link | ||
| ENCFF849UTP | ENCFF849UTP.tsv | tsv (library fraction) | library fraction | 1.1 MB | link |