ENCSR339JTP
ENCSR ENCODERBM39 ChIP-seq in HepG2
Organism:
Homo sapiens
Experiment Types:
TF ChIP-seq
Status:
released
Contact:
Xiang-Dong Fu, UCSD
Summary
TF ChIP-seq of RBM39 in Homo sapiens HepG2
Overall Design
RBM39 ChIP-seq in HepG2
Analysis
View Data Processing
Analysis page is available for ENCSR339JTP.
Dataset Citations (1)
A large-scale binding and functional map of human RNA-binding proteins.
PMID 32728246
· 2020
· Nature
Eric L Van Nostrand, Peter Freese, Gabriel A Pratt, Xiaofeng Wang, Xintao Wei, Rui Xiao, Steven M Blue, Jia-Yu Chen, Neal A L Cody, Daniel Dominguez, Sara Olson, Balaji Sundararaman, Lijun Zhan, Cassandra Bazile, Louis Philip Benoit Bouvrette, Julie Bergalet, Michael O Duff, Keri E Garcia, Chelsea Gelboin-Burkhart, Myles Hochman, Nicole J Lambert, Hairi Li, Michael P McGurk, Thai B Nguyen, Tsultrim Palden, Ines Rabano, Shashank Sathe, Rebecca Stanton, Amanda Su, Ruth Wang, Brian A Yee, Bing Zhou, Ashley L Louie, Stefan Aigner, Xiang-Dong Fu, Eric Lécuyer, Christopher B Burge, Brenton R Graveley, Gene W Yeo
ENCODE Metadata
Total file size: 37.0 GBAssay: TF ChIP-seq
Target: RBM39
Biosample: Homo sapiens HepG2
Files: 62
Unique ENC file IDs: 62
File Formats
bigWig (18)
bed (16)
bam (12)
bigBed (12)
fastq (4)
Output types (10)
peaks and background as input for IDR (12)
fold change over control (9)
signal p-value (9)
alignments (6)
IDR thresholded peaks (6)
unfiltered alignments (6)
IDR ranked peaks (4)
optimal IDR thresholded peaks (4)
reads (4)
conservative IDR thresholded peaks (2)
Linked Publications (1)
Data Files (62)
| Accession | File Name | Stored Type | Output Type | Mapping Assembly | Size | Download | |
|---|---|---|---|---|---|---|---|
| ENCFF155SKN | ENCFF155SKN.bam | bam (alignments) | alignments | 430.9 MB | link | ||
| ENCFF165OGY | ENCFF165OGY.bam | bam (alignments) | alignments | 584.6 MB | link | ||
| ENCFF278JXM | ENCFF278JXM.bam | bam (alignments) | alignments | 431.6 MB | link | ||
| ENCFF421JVQ | ENCFF421JVQ.bam | bam (alignments) | alignments | 460.3 MB | link | ||
| ENCFF456RAQ | ENCFF456RAQ.bam | bam (alignments) | alignments | 585.5 MB | link | ||
| ENCFF463TIS | ENCFF463TIS.bam | bam (alignments) | alignments | 627.2 MB | link | ||
| ENCFF035WXZ | ENCFF035WXZ.bam | bam (unfiltered alignments) | unfiltered alignments | 3.7 GB | link | ||
| ENCFF114DFN | ENCFF114DFN.bam | bam (unfiltered alignments) | unfiltered alignments | 1.9 GB | link | ||
| ENCFF115JJP | ENCFF115JJP.bam | bam (unfiltered alignments) | unfiltered alignments | 3.7 GB | link | ||
| ENCFF329PYW | ENCFF329PYW.bam | bam (unfiltered alignments) | unfiltered alignments | 1.9 GB | link | ||
| ENCFF392OZZ | ENCFF392OZZ.bam | bam (unfiltered alignments) | unfiltered alignments | 3.8 GB | link | ||
| ENCFF852KFM | ENCFF852KFM.bam | bam (unfiltered alignments) | unfiltered alignments | 2.0 GB | link | ||
| ENCFF796LVD | ENCFF796LVD.bed | bed (conservative IDR thresholded peaks) | conservative IDR thresholded peaks | 552.7 KB | link | ||
| ENCFF123KOI | ENCFF123KOI.bed | bed (IDR ranked peaks) | IDR ranked peaks | 8.1 MB | link | ||
| ENCFF477UDC | ENCFF477UDC.bed | bed (IDR ranked peaks) | IDR ranked peaks | 5.8 MB | link | ||
| ENCFF532MRI | ENCFF532MRI.bed | bed (IDR ranked peaks) | IDR ranked peaks | 4.2 MB | link | ||
| ENCFF669NRR | ENCFF669NRR.bed | bed (IDR ranked peaks) | IDR ranked peaks | 6.9 MB | link | ||
| ENCFF195AFS | ENCFF195AFS.bed | bed (IDR thresholded peaks) | IDR thresholded peaks | 176.7 KB | link | ||
| ENCFF399WWB | ENCFF399WWB.bed | bed (IDR thresholded peaks) | IDR thresholded peaks | 254.7 KB | link | ||
| ENCFF668CJJ | ENCFF668CJJ.bed | bed (IDR thresholded peaks) | IDR thresholded peaks | 366.5 KB | link | ||
| ENCFF221GWO | ENCFF221GWO.bed | bed (optimal IDR thresholded peaks) | optimal IDR thresholded peaks | 580.6 KB | link | ||
| ENCFF420ALF | ENCFF420ALF.bed | bed (optimal IDR thresholded peaks) | optimal IDR thresholded peaks | 574.9 KB | link | ||
| ENCFF160DKY | ENCFF160DKY.bed | bed (peaks and background as input for IDR) | peaks and background as input for IDR | 6.2 MB | link | ||
| ENCFF208QUF | ENCFF208QUF.bed | bed (peaks and background as input for IDR) | peaks and background as input for IDR | 6.8 MB | link | ||
| ENCFF464APE | ENCFF464APE.bed | bed (peaks and background as input for IDR) | peaks and background as input for IDR | 6.7 MB | link | ||
| ENCFF650BJE | ENCFF650BJE.bed | bed (peaks and background as input for IDR) | peaks and background as input for IDR | 6.4 MB | link | ||
| ENCFF948VIO | ENCFF948VIO.bed | bed (peaks and background as input for IDR) | peaks and background as input for IDR | 6.2 MB | link | ||
| ENCFF956IIT | ENCFF956IIT.bed | bed (peaks and background as input for IDR) | peaks and background as input for IDR | 6.4 MB | link | ||
| ENCFF801JUH | ENCFF801JUH.bigBed | bigBed (conservative IDR thresholded peaks) | conservative IDR thresholded peaks | 1.1 MB | link | ||
| ENCFF055REI | ENCFF055REI.bigBed | bigBed (IDR thresholded peaks) | IDR thresholded peaks | 510.0 KB | link | ||
| ENCFF315ODQ | ENCFF315ODQ.bigBed | bigBed (IDR thresholded peaks) | IDR thresholded peaks | 862.8 KB | link | ||
| ENCFF398BYU | ENCFF398BYU.bigBed | bigBed (IDR thresholded peaks) | IDR thresholded peaks | 387.4 KB | link | ||
| ENCFF084YZE | ENCFF084YZE.bigBed | bigBed (optimal IDR thresholded peaks) | optimal IDR thresholded peaks | 1.2 MB | link | ||
| ENCFF319LNQ | ENCFF319LNQ.bigBed | bigBed (optimal IDR thresholded peaks) | optimal IDR thresholded peaks | 1.2 MB | link | ||
| ENCFF045YCX | ENCFF045YCX.bigBed | bigBed (peaks and background as input for IDR) | peaks and background as input for IDR | 12.0 MB | link | ||
| ENCFF261CIP | ENCFF261CIP.bigBed | bigBed (peaks and background as input for IDR) | peaks and background as input for IDR | 12.1 MB | link | ||
| ENCFF446DEE | ENCFF446DEE.bigBed | bigBed (peaks and background as input for IDR) | peaks and background as input for IDR | 12.2 MB | link | ||
| ENCFF546VOE | ENCFF546VOE.bigBed | bigBed (peaks and background as input for IDR) | peaks and background as input for IDR | 12.1 MB | link | ||
| ENCFF755VUR | ENCFF755VUR.bigBed | bigBed (peaks and background as input for IDR) | peaks and background as input for IDR | 11.9 MB | link | ||
| ENCFF830CAJ | ENCFF830CAJ.bigBed | bigBed (peaks and background as input for IDR) | peaks and background as input for IDR | 12.2 MB | link | ||
| ENCFF050OGO | ENCFF050OGO.bigWig | bigWig (fold change over control) | fold change over control | 413.6 MB | link | ||
| ENCFF080BMZ | ENCFF080BMZ.bigWig | bigWig (fold change over control) | fold change over control | 411.2 MB | link | ||
| ENCFF110LLV | ENCFF110LLV.bigWig | bigWig (fold change over control) | fold change over control | 429.6 MB | link | ||
| ENCFF154AYA | ENCFF154AYA.bigWig | bigWig (fold change over control) | fold change over control | 546.9 MB | link | ||
| ENCFF229ZKH | ENCFF229ZKH.bigWig | bigWig (fold change over control) | fold change over control | 521.8 MB | link | ||
| ENCFF614GWM | ENCFF614GWM.bigWig | bigWig (fold change over control) | fold change over control | 619.0 MB | link | ||
| ENCFF764IIZ | ENCFF764IIZ.bigWig | bigWig (fold change over control) | fold change over control | 617.3 MB | link | ||
| ENCFF830QBU | ENCFF830QBU.bigWig | bigWig (fold change over control) | fold change over control | 650.0 MB | link | ||
| ENCFF946TCI | ENCFF946TCI.bigWig | bigWig (fold change over control) | fold change over control | 513.7 MB | link | ||
| ENCFF055MJF | ENCFF055MJF.bigWig | bigWig (signal p-value) | signal p-value | 800.0 MB | link | ||
| ENCFF066SXN | ENCFF066SXN.bigWig | bigWig (signal p-value) | signal p-value | 819.5 MB | link | ||
| ENCFF161LJS | ENCFF161LJS.bigWig | bigWig (signal p-value) | signal p-value | 658.4 MB | link | ||
| ENCFF464FHS | ENCFF464FHS.bigWig | bigWig (signal p-value) | signal p-value | 720.4 MB | link | ||
| ENCFF510EAY | ENCFF510EAY.bigWig | bigWig (signal p-value) | signal p-value | 736.9 MB | link | ||
| ENCFF721BWZ | ENCFF721BWZ.bigWig | bigWig (signal p-value) | signal p-value | 835.3 MB | link | ||
| ENCFF771JTA | ENCFF771JTA.bigWig | bigWig (signal p-value) | signal p-value | 643.1 MB | link | ||
| ENCFF805SAD | ENCFF805SAD.bigWig | bigWig (signal p-value) | signal p-value | 652.3 MB | link | ||
| ENCFF962FFL | ENCFF962FFL.bigWig | bigWig (signal p-value) | signal p-value | 803.4 MB | link | ||
| ENCFF380WBW | ENCFF380WBW.fastq | fastq (reads) | reads | 3.0 GB | link | ||
| ENCFF395MZU | ENCFF395MZU.fastq | fastq (reads) | reads | 427.9 MB | link | ||
| ENCFF422CIB | ENCFF422CIB.fastq | fastq (reads) | reads | 1.8 GB | link | ||
| ENCFF604MMC | ENCFF604MMC.fastq | fastq (reads) | reads | 434.3 MB | link |