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GSE278725

GSE GEO
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LARP6 shapes the mRNA translation of fibrogenic genes [eCLIP]

Platform: GPL24676
Samples: 8

Relations

GSE279065

Summary

Metabolic syndrome and excessive alcohol consumption result in liver injury and fibrosis, which is characterized by an increased collagen production by activated Hepatic Stellate Cells (HSCs). LARP6, an RNA-binding protein, was shown to facilitate collagen production. However, LARP6 expression and functionality as a regulator of fibrosis development in a disease relevant model remains elusive. By using snRNA-seq, we show that LARP6 and collagen-associated genes are upregulated mainly in HSCs of hepatic fibrosis patients. Moreover, LARP6 knockdown in isolated HSCs suppressed fibrogenic genes expression. By integrating eCLIP analysis and ribosome profiling in HSCs, we show that LARP6 interacts with mature mRNAs comprising over three hundred genes, including RNA structural elements within COL1A1, COL1A2, and COL3A1 to regulate mRNA expression and translation. Furthermore, LARP6 reduction attenuates fibrosis in human liver spheroids. Altogether, our results suggest that targeting LARP6 in human HSCs may provide new strategies for anti-fibrotic prevention and therapy.

Overall Design

eCLIP for LARP6 in TGFb treated HSCs or untreated.

Analysis page is available for GSE278725.

Supplementary Files (3)

GSE278725_CTRL_rep1.vs.CTRL_rep2.bed.gz Download
GSE278725_RAW.tar Download
GSE278725_TGFb_rep1.vs.TGFb_rep2.bed.gz Download
GEO Samples (8)

SRA Experiments (8) and Runs (8)

Total: 3241 MB
SRX26274383 SRP536455 RIP-Seq SINGLE
Sample: SRS22812074
BioProject: PRJNA1168517
BioSample: SAMN44051767
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR30877074 10458314 1045831400 337.0 SRA
SRX26274384 SRP536455 RNA-Seq SINGLE
Sample: SRS22812075
BioProject: PRJNA1168517
BioSample: SAMN44051766
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR30877073 9281656 928165600 299.0 SRA
SRX26274385 SRP536455 RIP-Seq SINGLE
Sample: SRS22812076
BioProject: PRJNA1168517
BioSample: SAMN44051765
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR30877072 10969190 1096919000 355.0 SRA
SRX26274386 SRP536455 RNA-Seq SINGLE
Sample: SRS22812077
BioProject: PRJNA1168517
BioSample: SAMN44051764
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR30877071 11030709 1103070900 359.0 SRA
SRX26274387 SRP536455 RIP-Seq SINGLE
Sample: SRS22812078
BioProject: PRJNA1168517
BioSample: SAMN44051763
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR30877070 10125435 1012543500 327.0 SRA
SRX26274388 SRP536455 RNA-Seq SINGLE
Sample: SRS22812079
BioProject: PRJNA1168517
BioSample: SAMN44051762
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR30877069 10930084 1093008400 356.0 SRA
SRX26274389 SRP536455 RIP-Seq SINGLE
Sample: SRS22812082
BioProject: PRJNA1168517
BioSample: SAMN44051761
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR30877068 17739348 1773934800 580.0 SRA
SRX26274390 SRP536455 RNA-Seq SINGLE
Sample: SRS22812080
BioProject: PRJNA1168517
BioSample: SAMN44051760
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR30877067 19127583 1912758300 628.0 SRA

Linked Publications (1)

LARP6 regulates the mRNA translation of fibrogenic genes in liver fibrosis.
bioRxiv : the preprint server for biology · 2025

Data Files (8)

Accession File Name Stored Type Output Type Mapping Assembly Size Download
— SRR30877068_GSM8553796 RIP-Seq 580.0 MB link
— SRR30877070_GSM8553794 RIP-Seq 327.0 MB link
— SRR30877072_GSM8553792 RIP-Seq 355.0 MB link
— SRR30877074_GSM8553790 RIP-Seq 337.0 MB link
— SRR30877067_GSM8553797 RNA-Seq 628.0 MB link
— SRR30877069_GSM8553795 RNA-Seq 356.0 MB link
— SRR30877071_GSM8553793 RNA-Seq 359.0 MB link
— SRR30877073_GSM8553791 RNA-Seq 299.0 MB link