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GSE278725

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LARP6 shapes the mRNA translation of fibrogenic genes [eCLIP]

Platform: GPL24676
Samples: 8

Relations

GSE279065

Summary

Metabolic syndrome and excessive alcohol consumption result in liver injury and fibrosis, which is characterized by an increased collagen production by activated Hepatic Stellate Cells (HSCs). LARP6, an RNA-binding protein, was shown to facilitate collagen production. However, LARP6 expression and functionality as a regulator of fibrosis development in a disease relevant model remains elusive. By using snRNA-seq, we show that LARP6 and collagen-associated genes are upregulated mainly in HSCs of hepatic fibrosis patients. Moreover, LARP6 knockdown in isolated HSCs suppressed fibrogenic genes expression. By integrating eCLIP analysis and ribosome profiling in HSCs, we show that LARP6 interacts with mature mRNAs comprising over three hundred genes, including RNA structural elements within COL1A1, COL1A2, and COL3A1 to regulate mRNA expression and translation. Furthermore, LARP6 reduction attenuates fibrosis in human liver spheroids. Altogether, our results suggest that targeting LARP6 in human HSCs may provide new strategies for anti-fibrotic prevention and therapy.

Overall Design

eCLIP for LARP6 in TGFb treated HSCs or untreated.

Analysis page is available for GSE278725.

Supplementary Files (3)

GSE278725_CTRL_rep1.vs.CTRL_rep2.bed.gz Download
GSE278725_RAW.tar Download
GSE278725_TGFb_rep1.vs.TGFb_rep2.bed.gz Download
GEO Samples (8)

Linked Publications (1)

LARP6 regulates the mRNA translation of fibrogenic genes in liver fibrosis.
bioRxiv : the preprint server for biology · 2025