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LARP6 regulates the mRNA translation of fibrogenic genes in liver fibrosis.

Hyun Young Kim, Orel Mizrahi, Wonseok Lee, Sara B Rosenthal, Cuijuan Han, Brian A Yee, Steven M Blue, Jesiel Diaz, Jyotiprakash Jonnalagadda, Kanani Hokutan, Haeum Jang, Chen-Ting Ma, Andrey Bobkov, Eduard Sergienko, Michael R Jackson, Branko Stefanovic, Tatiana Kisseleva, Gene W Yeo, David A Brenner

bioRxiv : the preprint server for biology · 2025

Abstract

Metabolic syndrome and excessive alcohol consumption result in liver injury and fibrosis, which is characterized by increased collagen production by activated Hepatic Stellate Cells (HSCs). LARP6, an RNA-binding protein, was shown to facilitate collagen production. However, LARP6 expression and functionality as a regulator of fibrosis development in a disease relevant model remains elusive. By using snRNA-sequencing, we show that LARP6 is upregulated mainly in HSCs of liver fibrosis patients. Moreover, LARP6 knockdown in human HSCs suppresses fibrogenic gene expression. By integrating eCLIP analysis and ribosome profiling in HSCs, we show that LARP6 interacts with mature mRNAs comprising over 300 genes, including RNA structural elements within <i>COL1A1</i> , <i>COL1A2</i> , and <i>COL3A1</i> to regulate mRNA expression and translation. Furthermore, LARP6 knockdown in HSC attenuates fibrosis development in human liver spheroids. Altogether, our results suggest that targeting LARP6 in human HSCs may provide new strategies for anti-fibrotic therapy. LARP6 is upregulated in liver fibrosis, mainly in HSCs.LARP6 knockdown in human HSCs reduces liver fibrosis development.Of the hundreds of gene targets, LARP6 interacts most with collagen mRNAs.LARP6 regulates mRNA translation via interaction with 5'UTRs.

Linked datasets 3

GSE278725 GSE · via ncbi_elink
GEO ↗

LARP6 shapes the mRNA translation of fibrogenic genes [eCLIP]

8 data files
FileTypeSize
SRR30877067_GSM8553797 RNA-Seq 628.0 MB
SRR30877068_GSM8553796 RIP-Seq 580.0 MB
SRR30877069_GSM8553795 RNA-Seq 356.0 MB
SRR30877070_GSM8553794 RIP-Seq 327.0 MB
SRR30877071_GSM8553793 RNA-Seq 359.0 MB
SRR30877072_GSM8553792 RIP-Seq 355.0 MB
SRR30877073_GSM8553791 RNA-Seq 299.0 MB
SRR30877074_GSM8553790 RIP-Seq 337.0 MB
GSE279064 GSE · via ncbi_elink
GEO ↗

LARP6 shapes the mRNA translation of fibrogenic genes [RNA-seq]

8 data files
FileTypeSize
SRR30919181_GSM8560367 RNA-Seq 2.1 GB
SRR30919182_GSM8560366 RNA-Seq 1.9 GB
SRR30919183_GSM8560365 RNA-Seq 1.6 GB
SRR30919184_GSM8560364 RNA-Seq 2.2 GB
SRR30919185_GSM8560363 RNA-Seq 1.2 GB
SRR30919186_GSM8560362 RNA-Seq 1.9 GB
SRR30919187_GSM8560361 RNA-Seq 1.0 GB
SRR30919188_GSM8560360 RNA-Seq 827.0 MB
GSE279065 GSE · via ncbi_elink
GEO ↗

LARP6 shapes the mRNA translation of fibrogenic genes

Analysis pipelines 3

Pipeline Assay Steps Dataset
GSE278725 eCLIP Data Processing geo_data_processing eCLIP 9 GSE278725
GSE279064 eCLIP Data Processing geo_data_processing eCLIP 3 GSE279064
GSE279065 eCLIP Data Processing geo_data_processing eCLIP 9 GSE279065
Funding 1 grant
Grant Funder
T32 HL115505 NHLBI NIH HHS (United States)