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GSE279064

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LARP6 shapes the mRNA translation of fibrogenic genes [RNA-seq]

Platform: GPL24676
Samples: 8

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GSE279065

Summary

Metabolic syndrome and excessive alcohol consumption result in liver injury and fibrosis, which is characterized by an increased collagen production by activated Hepatic Stellate Cells (HSCs). LARP6, an RNA-binding protein, was shown to facilitate collagen production. However, LARP6 expression and functionality as a regulator of fibrosis development in a disease relevant model remains elusive. By using snRNA-seq, we show that LARP6 and collagen-associated genes are upregulated mainly in HSCs of hepatic fibrosis patients. Moreover, LARP6 knockdown in isolated HSCs suppressed fibrogenic genes expression. By integrating eCLIP analysis and ribosome profiling in HSCs, we show that LARP6 interacts with mature mRNAs comprising over three hundred genes, including RNA structural elements within COL1A1, COL1A2, and COL3A1 to regulate mRNA expression and translation. Furthermore, LARP6 reduction attenuates fibrosis in human liver spheroids. Altogether, our results suggest that targeting LARP6 in human HSCs may provide new strategies for anti-fibrotic prevention and therapy.

Overall Design

eCLIP for LARP6 in TGFb treated HSCs or untreated.

Analysis page is available for GSE279064.

Supplementary Files (2)

GSE279064_RAW.tar Download
GSE279064_translation_efficiency.txt.gz Download
GEO Samples (8)

SRA Experiments (8) and Runs (8)

Total: 13074 MB
SRX26322250 SRP537317 RNA-Seq SINGLE
Sample: SRS22849309
BioProject: PRJNA1170287
BioSample: SAMN44108986
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR30919188 27725973 2772597300 827.0 SRA
SRX26322251 SRP537317 RNA-Seq SINGLE
Sample: SRS22849310
BioProject: PRJNA1170287
BioSample: SAMN44108985
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR30919187 35458874 3545887400 1058.0 SRA
SRX26322252 SRP537317 RNA-Seq SINGLE
Sample: SRS22849312
BioProject: PRJNA1170287
BioSample: SAMN44108984
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR30919186 63700732 6370073200 1943.0 SRA
SRX26322253 SRP537317 RNA-Seq SINGLE
Sample: SRS22849311
BioProject: PRJNA1170287
BioSample: SAMN44108983
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR30919185 41452740 4145274000 1251.0 SRA
SRX26322254 SRP537317 RNA-Seq SINGLE
Sample: SRS22849313
BioProject: PRJNA1170287
BioSample: SAMN44108982
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR30919184 69654185 6965418500 2224.0 SRA
SRX26322255 SRP537317 RNA-Seq SINGLE
Sample: SRS22849314
BioProject: PRJNA1170287
BioSample: SAMN44108981
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR30919183 52142587 5214258700 1675.0 SRA
SRX26322256 SRP537317 RNA-Seq SINGLE
Sample: SRS22849315
BioProject: PRJNA1170287
BioSample: SAMN44108980
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR30919182 61828604 6182860400 1972.0 SRA
SRX26322257 SRP537317 RNA-Seq SINGLE
Sample: SRS22849316
BioProject: PRJNA1170287
BioSample: SAMN44108979
Platform: ILLUMINA
Instrument: Illumina NovaSeq 6000
Organism: Homo sapiens
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR30919181 66903659 6690365900 2124.0 SRA

Linked Publications (1)

LARP6 regulates the mRNA translation of fibrogenic genes in liver fibrosis.
bioRxiv : the preprint server for biology · 2025

Data Files (8)

Accession File Name Stored Type Output Type Mapping Assembly Size Download
— SRR30919181_GSM8560367 RNA-Seq 2.1 GB link
— SRR30919182_GSM8560366 RNA-Seq 1.9 GB link
— SRR30919183_GSM8560365 RNA-Seq 1.6 GB link
— SRR30919184_GSM8560364 RNA-Seq 2.2 GB link
— SRR30919185_GSM8560363 RNA-Seq 1.2 GB link
— SRR30919186_GSM8560362 RNA-Seq 1.9 GB link
— SRR30919187_GSM8560361 RNA-Seq 1.0 GB link
— SRR30919188_GSM8560360 RNA-Seq 827.0 MB link