GSE315347

GSE GEO

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Comprehensive RNA-binding protein analyses using enhanced CLIP (ENCORE) [dataset1]

Platform: GPL20301, GPL24676

Samples: 272

Relations

GSE315407

Summary

RNA-binding proteins (RBPs) orchestrate post-transcriptional processes, including splicing, cleavage and polyadenylation, and translation. This dataset integrates enhanced CLIP (eCLIP) data for comprehensive characterization of RNA elements within human cells.

Overall Design

Enhanced CLIP (eCLIP) experiments were performed for RNA-binding proteins in human K562 and HepG2 cells. Each experiment includes two biological replicates with corresponding size-matched input controls. eCLIP identifies protein-RNA interaction sites at high resolution by UV crosslinking, immunoprecipitation, and high-throughput sequencing.

Analysis

View Data Processing

Analysis page is available for GSE315347.

Supplementary Files (68)

GSE315347_ADAR_K562_4137.reproducible_enriched_windows.tsv.gz Download

GSE315347_ADAT1_K562_4217.reproducible_enriched_windows.tsv.gz Download

GSE315347_AGO2_K562_4116.reproducible_enriched_windows.tsv.gz Download

GSE315347_APEX1_HepG2_4081.reproducible_enriched_windows.tsv.gz Download

GSE315347_APEX1_K562_4028.reproducible_enriched_windows.tsv.gz Download

GSE315347_CACTIN_HepG2_4190.reproducible_enriched_windows.tsv.gz Download

GSE315347_CACTIN_K562_4158.reproducible_enriched_windows.tsv.gz Download

GSE315347_CNOT2_HepG2_4191.reproducible_enriched_windows.tsv.gz Download

GSE315347_CXXC1_K562_4088.reproducible_enriched_windows.tsv.gz Download

GSE315347_DDX1_K562_4231.reproducible_enriched_windows.tsv.gz Download

GSE315347_DDX43_K562_4160.reproducible_enriched_windows.tsv.gz Download

GSE315347_DDX47_K562_4050.reproducible_enriched_windows.tsv.gz Download

GSE315347_DEK_HepG2_4020.reproducible_enriched_windows.tsv.gz Download

GSE315347_DEK_HepG2_4146.reproducible_enriched_windows.tsv.gz Download

GSE315347_DEK_K562_4004.reproducible_enriched_windows.tsv.gz Download

GSE315347_DHX38_HepG2_4202.reproducible_enriched_windows.tsv.gz Download

GSE315347_EED_K562_4223.reproducible_enriched_windows.tsv.gz Download

GSE315347_EEF2_K562_4037.reproducible_enriched_windows.tsv.gz Download

GSE315347_EIF3A_K562_4138.reproducible_enriched_windows.tsv.gz Download

GSE315347_EIF4E_HepG2_4082.reproducible_enriched_windows.tsv.gz Download

GSE315347_EIF4E_K562_4018.reproducible_enriched_windows.tsv.gz Download

GSE315347_EIF6_K562_4222.reproducible_enriched_windows.tsv.gz Download

GSE315347_ELAC2_K562_4224.reproducible_enriched_windows.tsv.gz Download

GSE315347_ELAVL1_HepG2_4083.reproducible_enriched_windows.tsv.gz Download

GSE315347_ELAVL1_K562_4044.reproducible_enriched_windows.tsv.gz Download

GSE315347_EXOSC10_K562_4161.reproducible_enriched_windows.tsv.gz Download

GSE315347_FMRP_K562_4030.reproducible_enriched_windows.tsv.gz Download

GSE315347_FUBP1_K562_4055.reproducible_enriched_windows.tsv.gz Download

GSE315347_FXR1_K562_4036.reproducible_enriched_windows.tsv.gz Download

GSE315347_FXR2_HepG2_4098.reproducible_enriched_windows.tsv.gz Download

GSE315347_FXR2_K562_4002.reproducible_enriched_windows.tsv.gz Download

GSE315347_GARS_HepG2_4108.reproducible_enriched_windows.tsv.gz Download

GSE315347_GARS_K562_4040.reproducible_enriched_windows.tsv.gz Download

GSE315347_HNRNPK_K562_4006.reproducible_enriched_windows.tsv.gz Download

GSE315347_MBNL1_K562_4056.reproducible_enriched_windows.tsv.gz Download

GSE315347_METTL1_K562_4225.reproducible_enriched_windows.tsv.gz Download

GSE315347_MFAP1_K562_4169.reproducible_enriched_windows.tsv.gz Download

GSE315347_MORC2_K562_4139.reproducible_enriched_windows.tsv.gz Download

GSE315347_NCL_K562_4035.reproducible_enriched_windows.tsv.gz Download

GSE315347_NONO_HepG2_4084.reproducible_enriched_windows.tsv.gz Download

GSE315347_NONO_K562_4001.reproducible_enriched_windows.tsv.gz Download

GSE315347_NPM1_K562_4010.reproducible_enriched_windows.tsv.gz Download

GSE315347_NSUN2_HepG2_4215.reproducible_enriched_windows.tsv.gz Download

GSE315347_NSUN4_K562_4047.reproducible_enriched_windows.tsv.gz Download

GSE315347_PARP_HepG2_4214.reproducible_enriched_windows.tsv.gz Download

GSE315347_PPP1R10_HepG2_4148.reproducible_enriched_windows.tsv.gz Download

GSE315347_PRPF39_HepG2_4114.reproducible_enriched_windows.tsv.gz Download

GSE315347_PRPF39_HepG2_4149.reproducible_enriched_windows.tsv.gz Download

GSE315347_PRPF39_K562_4068.reproducible_enriched_windows.tsv.gz Download

GSE315347_RAW.tar Download

GSE315347_RECQ1_K562_4049.reproducible_enriched_windows.tsv.gz Download

GSE315347_RPS6_K562_4012.reproducible_enriched_windows.tsv.gz Download

GSE315347_RYBP_K562_4140.reproducible_enriched_windows.tsv.gz Download

GSE315347_SF3A1_HepG2_4117.reproducible_enriched_windows.tsv.gz Download

GSE315347_SF3A1_K562_4048.reproducible_enriched_windows.tsv.gz Download

GSE315347_SNRNP200_HepG2_4212.reproducible_enriched_windows.tsv.gz Download

GSE315347_SNRNP200_K562_4152.reproducible_enriched_windows.tsv.gz Download

GSE315347_SNRPA1_HepG2_4203.reproducible_enriched_windows.tsv.gz Download

GSE315347_SNRPC_HepG2_4187.reproducible_enriched_windows.tsv.gz Download

GSE315347_SNRPC_K562_4164.reproducible_enriched_windows.tsv.gz Download

GSE315347_SNRPD3_HepG2_4204.reproducible_enriched_windows.tsv.gz Download

GSE315347_SNRPD3_K562_4155.reproducible_enriched_windows.tsv.gz Download

GSE315347_SRSF1_K562_4045.reproducible_enriched_windows.tsv.gz Download

GSE315347_SRSF5_K562_4058.reproducible_enriched_windows.tsv.gz Download

GSE315347_SRSF9_K562_4132.reproducible_enriched_windows.tsv.gz Download

GSE315347_TARDBP_HepG2_4110.reproducible_enriched_windows.tsv.gz Download

GSE315347_TDP43_K562_4014.reproducible_enriched_windows.tsv.gz Download

GSE315347_TIAL1_K562_4221.reproducible_enriched_windows.tsv.gz Download

GEO Samples (272)

GSM9425776 GSM9425777 GSM9425778 GSM9425779 GSM9425780 GSM9425781 GSM9425782 GSM9425783 GSM9425784 GSM9425785 GSM9425786 GSM9425787 GSM9425788 GSM9425789 GSM9425790 GSM9425791 GSM9425792 GSM9425793 GSM9425794 GSM9425795 GSM9425796 GSM9425797 GSM9425798 GSM9425799 GSM9425800 GSM9425801 GSM9425802 GSM9425803 GSM9425804 GSM9425805 GSM9425806 GSM9425807 GSM9425808 GSM9425809 GSM9425810 GSM9425811 GSM9425812 GSM9425813 GSM9425814 GSM9425815 GSM9425816 GSM9425817 GSM9425818 GSM9425819 GSM9425820 GSM9425821 GSM9425822 GSM9425823 GSM9425824 GSM9425825 GSM9425826 GSM9425827 GSM9425828 GSM9425829 GSM9425830 GSM9425831 GSM9425832 GSM9425833 GSM9425834 GSM9425835 GSM9425836 GSM9425837 GSM9425838 GSM9425839 GSM9425840 GSM9425841 GSM9425842 GSM9425843 GSM9425844 GSM9425845 GSM9425846 GSM9425847 GSM9425848 GSM9425849 GSM9425850 GSM9425851 GSM9425852 GSM9425853 GSM9425854 GSM9425855 GSM9425856 GSM9425857 GSM9425858 GSM9425859 GSM9425860 GSM9425861 GSM9425862 GSM9425863 GSM9425864 GSM9425865 GSM9425866 GSM9425867 GSM9425868 GSM9425869 GSM9425870 GSM9425871 GSM9425872 GSM9425873 GSM9425874 GSM9425875 GSM9425876 GSM9425877 GSM9425878 GSM9425879 GSM9425880 GSM9425881 GSM9425882 GSM9425883 GSM9425884 GSM9425885 GSM9425886 GSM9425887 GSM9425888 GSM9425889 GSM9425890 GSM9425891 GSM9425892 GSM9425893 GSM9425894 GSM9425895 GSM9425896 GSM9425897 GSM9425898 GSM9425899 GSM9425900 GSM9425901 GSM9425902 GSM9425903 GSM9425904 GSM9425905 GSM9425906 GSM9425907 GSM9425908 GSM9425909 GSM9425910 GSM9425911 GSM9425912 GSM9425913 GSM9425914 GSM9425915 GSM9425916 GSM9425917 GSM9425918 GSM9425919 GSM9425920 GSM9425921 GSM9425922 GSM9425923 GSM9425924 GSM9425925 GSM9425926 GSM9425927 GSM9425928 GSM9425929 GSM9425930 GSM9425931 GSM9425932 GSM9425933 GSM9425934 GSM9425935 GSM9425936 GSM9425937 GSM9425938 GSM9425939 GSM9425940 GSM9425941 GSM9425942 GSM9425943 GSM9425944 GSM9425945 GSM9425946 GSM9425947 GSM9425948 GSM9425949 GSM9425950 GSM9425951 GSM9425952 GSM9425953 GSM9425954 GSM9425955 GSM9425956 GSM9425957 GSM9425958 GSM9425959 GSM9425960 GSM9425961 GSM9425962 GSM9425963 GSM9425964 GSM9425965 GSM9425966 GSM9425967 GSM9425968 GSM9425969 GSM9425970 GSM9425971 GSM9425972 GSM9425973 GSM9425974 GSM9425975 GSM9425976 GSM9425977 GSM9425978 GSM9425979 GSM9425980 GSM9425981 GSM9425982 GSM9425983 GSM9425984 GSM9425985 GSM9425986 GSM9425987 GSM9425988 GSM9425989 GSM9425990 GSM9425991 GSM9425992 GSM9425993 GSM9425994 GSM9425995 GSM9425996 GSM9425997 GSM9425998 GSM9425999 GSM9426000 GSM9426001 GSM9426002 GSM9426003 GSM9426004 GSM9426005 GSM9426006 GSM9426007 GSM9426008 GSM9426009 GSM9426010 GSM9426011 GSM9426012 GSM9426013 GSM9426014 GSM9426015 GSM9426016 GSM9426017 GSM9426018 GSM9426019 GSM9426020 GSM9426021 GSM9426022 GSM9426023 GSM9426024 GSM9426025 GSM9426026 GSM9426027 GSM9426028 GSM9426029 GSM9426030 GSM9426031 GSM9426032 GSM9426033 GSM9426034 GSM9426035 GSM9426036 GSM9426037 GSM9426038 GSM9426039 GSM9426040 GSM9426041 GSM9426042 GSM9426043 GSM9426044 GSM9426045 GSM9426046 GSM9426047

Linked Publications (1)

Comprehensive RNA-binding protein analyses and deep learning uncover genetic constraints and disease associations in protein-RNA interfaces.

Cell systems · 2026