GSE315406

GSE GEO

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Comprehensive RNA-binding protein analyses using enhanced CLIP (ENCORE) [dataset2]

Platform: GPL20301, GPL24676, GPL34284

Samples: 228

Relations

GSE315407

Summary

RNA-binding proteins (RBPs) orchestrate post-transcriptional processes, including splicing, cleavage and polyadenylation, and translation. This dataset integrates enhanced CLIP (eCLIP) data for comprehensive characterization of RNA elements within human cells.

Overall Design

Enhanced CLIP (eCLIP) experiments were performed for RNA-binding proteins in human K562 and HepG2 cells. Each experiment includes two biological replicates with corresponding size-matched input controls. eCLIP identifies protein-RNA interaction sites at high resolution by UV crosslinking, immunoprecipitation, and high-throughput sequencing.

Analysis

View Data Processing

Analysis page is available for GSE315406.

Supplementary Files (57)

GSE315406_BCAT2_K562_5120.reproducible_enriched_windows.tsv.gz Download

GSE315406_BRD4_K562_5079.reproducible_enriched_windows.tsv.gz Download

GSE315406_CDC40_K562_5006.reproducible_enriched_windows.tsv.gz Download

GSE315406_CDK9_HepG2_5063.reproducible_enriched_windows.tsv.gz Download

GSE315406_CELF1_K562_5041.reproducible_enriched_windows.tsv.gz Download

GSE315406_CNOT3_K562_5133.reproducible_enriched_windows.tsv.gz Download

GSE315406_DDX41_K562_5081.reproducible_enriched_windows.tsv.gz Download

GSE315406_DDX5_K562_5094.reproducible_enriched_windows.tsv.gz Download

GSE315406_DNAJC2_K562_5084.reproducible_enriched_windows.tsv.gz Download

GSE315406_EIF1_K562_5134.reproducible_enriched_windows.tsv.gz Download

GSE315406_EIF2B4_K562_5019.reproducible_enriched_windows.tsv.gz Download

GSE315406_EIF2B5_K562_5020.reproducible_enriched_windows.tsv.gz Download

GSE315406_EIF2S1_K562_5130.reproducible_enriched_windows.tsv.gz Download

GSE315406_EIF2S2_K562_5023.reproducible_enriched_windows.tsv.gz Download

GSE315406_EIF3B_K562_5061.reproducible_enriched_windows.tsv.gz Download

GSE315406_EIF3C_K562_5060.reproducible_enriched_windows.tsv.gz Download

GSE315406_EIF3E_K562_5025.reproducible_enriched_windows.tsv.gz Download

GSE315406_EIF4G2_K562_5065.reproducible_enriched_windows.tsv.gz Download

GSE315406_EIF4H_K562_5074.reproducible_enriched_windows.tsv.gz Download

GSE315406_FUBP3_K562_5040.reproducible_enriched_windows.tsv.gz Download

GSE315406_FUS_K562_5012.reproducible_enriched_windows.tsv.gz Download

GSE315406_GFPT1_K562_5078.reproducible_enriched_windows.tsv.gz Download

GSE315406_IGF2BP1_K562_5093.reproducible_enriched_windows.tsv.gz Download

GSE315406_KARS_K562_5104.reproducible_enriched_windows.tsv.gz Download

GSE315406_KHSRP_K562_5001.reproducible_enriched_windows.tsv.gz Download

GSE315406_LARP1_K562_5110.reproducible_enriched_windows.tsv.gz Download

GSE315406_LARS_K562_5082.reproducible_enriched_windows.tsv.gz Download

GSE315406_NCBP1_K562_5121.reproducible_enriched_windows.tsv.gz Download

GSE315406_NCL_K562_5086.reproducible_enriched_windows.tsv.gz Download

GSE315406_NKRF_K562_5005.reproducible_enriched_windows.tsv.gz Download

GSE315406_NOP2_K562_5098.reproducible_enriched_windows.tsv.gz Download

GSE315406_PABPC1_K562_5117.reproducible_enriched_windows.tsv.gz Download

GSE315406_PDCD4_K562_5075.reproducible_enriched_windows.tsv.gz Download

GSE315406_PRK2_K562_5064.reproducible_enriched_windows.tsv.gz Download

GSE315406_PRKRA_K562_5068.reproducible_enriched_windows.tsv.gz Download

GSE315406_PSMD4_K562_5077.reproducible_enriched_windows.tsv.gz Download

GSE315406_PTBP1_K562_5015.reproducible_enriched_windows.tsv.gz Download

GSE315406_PTBP1_K562_5030.reproducible_enriched_windows.tsv.gz Download

GSE315406_QKI_K562_5007.reproducible_enriched_windows.tsv.gz Download

GSE315406_RAW.tar Download

GSE315406_RBM10_K562_5113.reproducible_enriched_windows.tsv.gz Download

GSE315406_RBM15_K562_5008.reproducible_enriched_windows.tsv.gz Download

GSE315406_RBM5_K562_5018.reproducible_enriched_windows.tsv.gz Download

GSE315406_SFPQ_K562_5125.reproducible_enriched_windows.tsv.gz Download

GSE315406_SUZ12_K562_5033.reproducible_enriched_windows.tsv.gz Download

GSE315406_TAF15_K562_5013.reproducible_enriched_windows.tsv.gz Download

GSE315406_TFAM_K562_5069.reproducible_enriched_windows.tsv.gz Download

GSE315406_THOC4_K562_5123.reproducible_enriched_windows.tsv.gz Download

GSE315406_TIAL1_K562_5014.reproducible_enriched_windows.tsv.gz Download

GSE315406_TIAL1_K562_5080.reproducible_enriched_windows.tsv.gz Download

GSE315406_UBAP2L_K562_5090.reproducible_enriched_windows.tsv.gz Download

GSE315406_UPF1_K562_5002.reproducible_enriched_windows.tsv.gz Download

GSE315406_USP10_K562_5089.reproducible_enriched_windows.tsv.gz Download

GSE315406_USP39_K562_5116.reproducible_enriched_windows.tsv.gz Download

GSE315406_WDR77_K562_5076.reproducible_enriched_windows.tsv.gz Download

GSE315406_YTHDC1_K562_5096.reproducible_enriched_windows.tsv.gz Download

GSE315406_YTHDF2_K562_5108.reproducible_enriched_windows.tsv.gz Download

GEO Samples (228)

GSM9426909 GSM9426910 GSM9426911 GSM9426912 GSM9426913 GSM9426914 GSM9426915 GSM9426916 GSM9426917 GSM9426918 GSM9426919 GSM9426920 GSM9426921 GSM9426922 GSM9426923 GSM9426924 GSM9426925 GSM9426926 GSM9426927 GSM9426928 GSM9426929 GSM9426930 GSM9426931 GSM9426932 GSM9426933 GSM9426934 GSM9426935 GSM9426936 GSM9426937 GSM9426938 GSM9426939 GSM9426940 GSM9426941 GSM9426942 GSM9426943 GSM9426944 GSM9426945 GSM9426946 GSM9426947 GSM9426948 GSM9426949 GSM9426950 GSM9426951 GSM9426952 GSM9426953 GSM9426954 GSM9426955 GSM9426956 GSM9426957 GSM9426958 GSM9426959 GSM9426960 GSM9426961 GSM9426962 GSM9426963 GSM9426964 GSM9426965 GSM9426966 GSM9426967 GSM9426968 GSM9426969 GSM9426970 GSM9426971 GSM9426972 GSM9426973 GSM9426974 GSM9426975 GSM9426976 GSM9426977 GSM9426978 GSM9426979 GSM9426980 GSM9426981 GSM9426982 GSM9426983 GSM9426984 GSM9426985 GSM9426986 GSM9426987 GSM9426988 GSM9426989 GSM9426990 GSM9426991 GSM9426992 GSM9426993 GSM9426994 GSM9426995 GSM9426996 GSM9426997 GSM9426998 GSM9426999 GSM9427000 GSM9427001 GSM9427002 GSM9427003 GSM9427004 GSM9427005 GSM9427006 GSM9427007 GSM9427008 GSM9427009 GSM9427010 GSM9427011 GSM9427012 GSM9427013 GSM9427014 GSM9427015 GSM9427016 GSM9427017 GSM9427018 GSM9427019 GSM9427020 GSM9427021 GSM9427022 GSM9427023 GSM9427024 GSM9427025 GSM9427026 GSM9427027 GSM9427028 GSM9427029 GSM9427030 GSM9427031 GSM9427032 GSM9427033 GSM9427034 GSM9427035 GSM9427036 GSM9427037 GSM9427038 GSM9427039 GSM9427040 GSM9427041 GSM9427042 GSM9427043 GSM9427044 GSM9427045 GSM9427046 GSM9427047 GSM9427048 GSM9427049 GSM9427050 GSM9427051 GSM9427052 GSM9427053 GSM9427054 GSM9427055 GSM9427056 GSM9427057 GSM9427058 GSM9427059 GSM9427060 GSM9427061 GSM9427062 GSM9427063 GSM9427064 GSM9427065 GSM9427066 GSM9427067 GSM9427068 GSM9427069 GSM9427070 GSM9427071 GSM9427072 GSM9427073 GSM9427074 GSM9427075 GSM9427076 GSM9427077 GSM9427078 GSM9427079 GSM9427080 GSM9427081 GSM9427082 GSM9427083 GSM9427084 GSM9427085 GSM9427086 GSM9427087 GSM9427088 GSM9427089 GSM9427090 GSM9427091 GSM9427092 GSM9427093 GSM9427094 GSM9427095 GSM9427096 GSM9427097 GSM9427098 GSM9427099 GSM9427100 GSM9427101 GSM9427102 GSM9427103 GSM9427104 GSM9427105 GSM9427106 GSM9427107 GSM9427108 GSM9427109 GSM9427110 GSM9427111 GSM9427112 GSM9427113 GSM9427114 GSM9427115 GSM9427116 GSM9427117 GSM9427118 GSM9427119 GSM9427120 GSM9427121 GSM9427122 GSM9427123 GSM9427124 GSM9427125 GSM9427126 GSM9427127 GSM9427128 GSM9427129 GSM9427130 GSM9427131 GSM9427132 GSM9427133 GSM9427134 GSM9427135 GSM9427136

Linked Publications (1)

Comprehensive RNA-binding protein analyses and deep learning uncover genetic constraints and disease associations in protein-RNA interfaces.

Cell systems · 2026