GSE5851 Processing Pipeline

GSE code_examples 1 step

Publication

DDX5 promotes oncogene C3 and FABP1 expressions and drives intestinal inflammation and tumorigenesis.

Life science alliance (2020) — PMID 32817263

Dataset

GSE5851

Phase II exploratory pharmacogenomics study of cetuximab monotherapy in patients with advanced metastatic CRC

Warning: Pipeline descriptions and code snippets may be inferred or AI-generated. Use them only as a starting point to guide analysis, and validate before use.

Processing Steps

Generate Jupyter Notebook
  1. 1

    Data scaled to 1500 mean signal intensity value using GCOS 1.1.1.052

    GCOS v1.1.1.052
    $ Bash example 
    gcos_cli scale_data --input_file raw_array_data.cel --target_mean_intensity 1500 --output_file scaled_array_data.cel
Raw Source Text 
Data scaled to 1500 mean signal intensity value using GCOS 1.1.1.052
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