GSE232520
GSE GEOExpanded palette of RNA base editors for comprehensive RBP-RNA interactome studies
Organism:
Homo sapiens
Platform:
GPL15520
Samples:
190
Experiment Types:
Other
Expression profiling by high throughput sequencing
Submitted:
May 15 2023
Last Updated:
Sep 27 2024
Status:
Public on Jan 31 2024
Contact:
Brian,,Yee (UCSD)
Relations
SuperSeries of: GSE232513
SuperSeries of: GSE232514
SuperSeries of: GSE232515
SuperSeries of: GSE232518
SuperSeries of: GSE232519
BioProject: https://www.ncbi.nlm.nih.gov/bioproject/PRJNA972650
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall Design
Refer to individual Series
Analysis (3 steps)
View Data Processing
Processing steps for GSE232520
- remove adapter with Cutadapt
- align to genome using bowtie2 or bwa-mem
- generate count tables along reporter sequence using Pysamstats
Supplementary Files (1)
GSE232520_RAW.tar
Download
GEO Samples (190)
GSM7349543
GSM7349544
GSM7349545
GSM7349546
GSM7349547
GSM7349548
GSM7349549
GSM7349550
GSM7349551
GSM7349552
GSM7349553
GSM7349554
GSM7349555
GSM7349556
GSM7349557
GSM7349558
GSM7349559
GSM7349560
GSM7349561
GSM7349562
GSM7349563
GSM7349564
GSM7349565
GSM7349566
GSM7349567
GSM7349568
GSM7349569
GSM7349570
GSM7349571
GSM7349572
GSM7349573
GSM7349574
GSM7349575
GSM7349576
GSM7349577
GSM7349578
GSM7349579
GSM7349580
GSM7349581
GSM7349582
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GSM7349595
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GSM7349599
GSM7349600
GSM7349601
GSM7349602
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GSM7349606
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GSM7349608
GSM7349609
GSM7349610
GSM7349611
GSM7349612
GSM7349613
GSM7349614
GSM7349615
GSM7349616
GSM7349617
GSM7349618
GSM7349619
GSM7349620
GSM7349621
GSM7349622
GSM7349623
GSM7349624
GSM7349625
GSM7349626
GSM7349627
GSM7349628
GSM7349629
GSM7349630
GSM7349631
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GSM7349633
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GSM7349641
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GSM7349650
GSM7349651
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GSM7349656
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GSM7349658
GSM7349659
GSM7349660
GSM7349661
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GSM7349664
GSM7349665
GSM7349666
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GSM7349668
GSM7349669
GSM7349670
GSM7349671
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GSM7349678
GSM7349679
GSM7349680
GSM7349681
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GSM7349700
GSM7349701
GSM7349702
GSM7349703
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GSM7349705
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GSM7349707
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GSM7349709
GSM7349710
GSM7349711
GSM7349712
GSM7349713
GSM7349714
GSM7349715
GSM7349716
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GSM7349718
GSM7349719
GSM7349720
GSM7349721
GSM7349722
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GSM7349724
GSM7349725
GSM7349726
GSM7349727
GSM7349728
GSM7349729
GSM7349730
GSM7349731
GSM7349732
GSM7349733
GSM7349734
GSM7349735
GSM7349736
GSM7349737
Dataset Citations (2)
Expanded palette of RNA base editors for comprehensive RBP-RNA interactome studies.
PMID 38287010
· 2024
· Nature communications
Hugo C Medina-Munoz, Eric Kofman, Pratibha Jagannatha, Evan A Boyle, Tao Yu, Krysten L Jones, Jasmine R Mueller, Grace D Lykins, Andrew T Doudna, Samuel S Park, Steven M Blue, Brodie L Ranzau, Rahul M Kohli, Alexis C Komor, Gene W Yeo
High-sensitivity in situ capture of endogenous RNA-protein interactions in fixed cells and primary tissues.
PMID 39152130
· 2024
· Nature communications
Qishan Liang, Tao Yu, Eric Kofman, Pratibha Jagannatha, Kevin Rhine, Brian A Yee, Kevin D Corbett, Gene W Yeo
Linked Publications (4)
High-sensitivity in situ capture of endogenous RNA-protein interactions in fixed cells and primary tissues.
Nature communications · 2024
Expanded palette of RNA base editors for comprehensive RBP-RNA interactome studies.
Nature communications · 2024
Expanded palette of RNA base editors for comprehensive RBP-RNA interactome studies.
Nature communications · 2024
High-sensitivity in situ capture of endogenous RNA-protein interactions in fixed cells and primary tissues.
Nature communications · 2024