Expanded palette of RNA base editors for comprehensive RBP-RNA interactome studies.
Hugo C Medina-Munoz, Eric Kofman, Pratibha Jagannatha, Evan A Boyle, Tao Yu, Krysten L Jones, Jasmine R Mueller, Grace D Lykins, Andrew T Doudna, Samuel S Park, Steven M Blue, Brodie L Ranzau, Rahul M Kohli, Alexis C Komor, Gene W Yeo
Nature communications · 2024 · Vol. 15 (1) · pp. 875
Abstract
RNA binding proteins (RBPs) are key regulators of RNA processing and cellular function. Technologies to discover RNA targets of RBPs such as TRIBE (targets of RNA binding proteins identified by editing) and STAMP (surveying targets by APOBEC1 mediated profiling) utilize fusions of RNA base-editors (rBEs) to RBPs to circumvent the limitations of immunoprecipitation (CLIP)-based methods that require enzymatic digestion and large amounts of input material. To broaden the repertoire of rBEs suitable for editing-based RBP-RNA interaction studies, we have devised experimental and computational assays in a framework called PRINTER (protein-RNA interaction-based triaging of enzymes that edit RNA) to assess over thirty A-to-I and C-to-U rBEs, allowing us to identify rBEs that expand the characterization of binding patterns for both sequence-specific and broad-binding RBPs. We also propose specific rBEs suitable for dual-RBP applications. We show that the choice between single or multiple rBEs to fuse with a given RBP or pair of RBPs hinges on the editing biases of the rBEs and the binding preferences of the RBPs themselves. We believe our study streamlines and enhances the selection of rBEs for the next generation of RBP-RNA target discovery.
Linked datasets 6
Expanded repertoire for RNA-editing-based detection for RNA binding protein interactions (3)
Homo sapiens
48 data files
| File | Type | Size |
|---|---|---|
| Hugo-A1_S1_L001_R1_001.fastq.gz | RNA-Seq | 474.9 MB |
| Hugo-A2_S2_L001_R1_001.fastq.gz | RNA-Seq | 482.3 MB |
| Hugo-A3_S11_L001_R1_001.fastq.gz | RNA-Seq | 342.7 MB |
| Hugo-B2_S7_L001_R1_001.fastq.gz | RNA-Seq | 375.6 MB |
| Hugo-B3_S8_L001_R1_001.fastq.gz | RNA-Seq | 461.3 MB |
| Hugo-B4_S14_L001_R1_001.fastq.gz | RNA-Seq | 437.5 MB |
| Hugo-B5_S9_L001_R1_001.fastq.gz | RNA-Seq | 502.8 MB |
| Hugo-B6_S10_L001_R1_001.fastq.gz | RNA-Seq | 545.7 MB |
| Hugo-B7_S15_L001_R1_001.fastq.gz | RNA-Seq | 366.1 MB |
| Hugo-D4_S75_L002_R1_001.fastq.gz | RNA-Seq | 488.1 MB |
| Hugo-D5_S76_L002_R1_001.fastq.gz | RNA-Seq | 534.0 MB |
| Hugo-D6_S30_L002_R1_001.fastq.gz | RNA-Seq | 439.1 MB |
| Hugo-D7_S77_L002_R1_001.fastq.gz | RNA-Seq | 521.1 MB |
| Hugo-D8_S78_L002_R1_001.fastq.gz | RNA-Seq | 414.7 MB |
| Hugo-E1_S31_L002_R1_001.fastq.gz | RNA-Seq | 432.5 MB |
| Hugo-E2_S79_L002_R1_001.fastq.gz | RNA-Seq | 623.7 MB |
| Hugo-E3_S80_L002_R1_001.fastq.gz | RNA-Seq | 571.2 MB |
| Hugo-E4_S32_L002_R1_001.fastq.gz | RNA-Seq | 550.4 MB |
| Hugo-E5_S81_L002_R1_001.fastq.gz | RNA-Seq | 480.7 MB |
| Hugo-E6_S82_L002_R1_001.fastq.gz | RNA-Seq | 515.3 MB |
| Hugo-E7_S33_L002_R1_001.fastq.gz | RNA-Seq | 456.3 MB |
| Hugo-E8_S83_L002_R1_001.fastq.gz | RNA-Seq | 474.5 MB |
| Hugo-F1_S84_L002_R1_001.fastq.gz | RNA-Seq | 504.2 MB |
| Hugo-F2_S34_L002_R1_001.fastq.gz | RNA-Seq | 498.8 MB |
| SRR24557344_GSM7349672 | RNA-Seq | 498.0 MB |
| SRR24557345_GSM7349671 | RNA-Seq | 504.0 MB |
| SRR24557346_GSM7349670 | RNA-Seq | 474.0 MB |
| SRR24557347_GSM7349669 | RNA-Seq | 456.0 MB |
| SRR24557348_GSM7349668 | RNA-Seq | 515.0 MB |
| SRR24557349_GSM7349667 | RNA-Seq | 480.0 MB |
| SRR24557350_GSM7349666 | RNA-Seq | 550.0 MB |
| SRR24557351_GSM7349665 | RNA-Seq | 571.0 MB |
| SRR24557352_GSM7349664 | RNA-Seq | 623.0 MB |
| SRR24557353_GSM7349663 | RNA-Seq | 432.0 MB |
| SRR24557354_GSM7349662 | RNA-Seq | 414.0 MB |
| SRR24557355_GSM7349661 | RNA-Seq | 521.0 MB |
| SRR24557356_GSM7349660 | RNA-Seq | 366.0 MB |
| SRR24557357_GSM7349659 | RNA-Seq | 545.0 MB |
| SRR24557358_GSM7349658 | RNA-Seq | 502.0 MB |
| SRR24557359_GSM7349657 | RNA-Seq | 437.0 MB |
| SRR24557360_GSM7349656 | RNA-Seq | 461.0 MB |
| SRR24557361_GSM7349655 | RNA-Seq | 375.0 MB |
| SRR24557362_GSM7349654 | RNA-Seq | 439.0 MB |
| SRR24557363_GSM7349653 | RNA-Seq | 534.0 MB |
| SRR24557364_GSM7349652 | RNA-Seq | 488.0 MB |
| SRR24557365_GSM7349651 | RNA-Seq | 342.0 MB |
| SRR24557366_GSM7349650 | RNA-Seq | 482.0 MB |
| SRR24557367_GSM7349649 | RNA-Seq | 474.0 MB |
Expanded palette of RNA base editors for comprehensive RBP-RNA interactome studies
Homo sapiens
Expanded repertoire of RNA-editing-based detection for RNA binding protein interactions (1)
Homo sapiens
152 data files
| File | Type | Size |
|---|---|---|
| 10_S10_L001_R1_001.fastq.gz | RNA-Seq | 18.7 MB |
| 11_S11_L001_R1_001.fastq.gz | RNA-Seq | 19.1 MB |
| 12_S12_L001_R1_001.fastq.gz | RNA-Seq | 19.7 MB |
| 13_S13_L001_R1_001.fastq.gz | RNA-Seq | 19.2 MB |
| 14_S14_L001_R1_001.fastq.gz | RNA-Seq | 20.5 MB |
| 15_S15_L001_R1_001.fastq.gz | RNA-Seq | 18.6 MB |
| 16_S16_L001_R1_001.fastq.gz | RNA-Seq | 19.7 MB |
| 17_S17_L001_R1_001.fastq.gz | RNA-Seq | 21.5 MB |
| 18_S18_L001_R1_001.fastq.gz | RNA-Seq | 20.6 MB |
| 19_S19_L001_R1_001.fastq.gz | RNA-Seq | 20.4 MB |
| 1_S1_L001_R1_001.fastq.gz | RNA-Seq | 15.9 MB |
| 20_S20_L001_R1_001.fastq.gz | RNA-Seq | 20.4 MB |
| 21_S21_L001_R1_001.fastq.gz | RNA-Seq | 20.2 MB |
| 22_S22_L001_R1_001.fastq.gz | RNA-Seq | 19.9 MB |
| 23_S23_L001_R1_001.fastq.gz | RNA-Seq | 18.9 MB |
| 24_S24_L001_R1_001.fastq.gz | RNA-Seq | 16.6 MB |
| 25_S25_L001_R1_001.fastq.gz | RNA-Seq | 21.9 MB |
| 26_S26_L001_R1_001.fastq.gz | RNA-Seq | 21.1 MB |
| 27_S27_L001_R1_001.fastq.gz | RNA-Seq | 19.0 MB |
| 28_S28_L001_R1_001.fastq.gz | RNA-Seq | 18.9 MB |
| 29_S29_L001_R1_001.fastq.gz | RNA-Seq | 18.7 MB |
| 2_S2_L001_R1_001.fastq.gz | RNA-Seq | 17.6 MB |
| 30_S30_L001_R1_001.fastq.gz | RNA-Seq | 18.2 MB |
| 3_S3_L001_R1_001.fastq.gz | RNA-Seq | 20.2 MB |
| 4_S4_L001_R1_001.fastq.gz | RNA-Seq | 19.0 MB |
| 5_S5_L001_R1_001.fastq.gz | RNA-Seq | 20.1 MB |
| 6_S6_L001_R1_001.fastq.gz | RNA-Seq | 18.8 MB |
| 7_S7_L001_R1_001.fastq.gz | RNA-Seq | 16.4 MB |
| 8_S8_L001_R1_001.fastq.gz | RNA-Seq | 20.0 MB |
| 9_S9_L001_R1_001.fastq.gz | RNA-Seq | 18.7 MB |
| A10_S8_L001_R1_001.fastq.gz | RNA-Seq | 73.0 MB |
| A11_S9_L001_R1_001.fastq.gz | RNA-Seq | 84.0 MB |
| A12_S10_L001_R1_001.fastq.gz | RNA-Seq | 96.3 MB |
| A3_S1_L001_R1_001.fastq.gz | RNA-Seq | 83.2 MB |
| A4_S2_L001_R1_001.fastq.gz | RNA-Seq | 68.2 MB |
| A5_S3_L001_R1_001.fastq.gz | RNA-Seq | 79.7 MB |
| A6_S4_L001_R1_001.fastq.gz | RNA-Seq | 79.9 MB |
| A7_S5_L001_R1_001.fastq.gz | RNA-Seq | 75.8 MB |
| A8_S6_L001_R1_001.fastq.gz | RNA-Seq | 75.5 MB |
| A9_S7_L001_R1_001.fastq.gz | RNA-Seq | 83.8 MB |
| B10_S20_L001_R1_001.fastq.gz | RNA-Seq | 83.5 MB |
| B11_S21_L001_R1_001.fastq.gz | RNA-Seq | 94.7 MB |
| B12_S22_L001_R1_001.fastq.gz | RNA-Seq | 125.3 MB |
| B1_S11_L001_R1_001.fastq.gz | RNA-Seq | 94.4 MB |
| B2_S12_L001_R1_001.fastq.gz | RNA-Seq | 76.3 MB |
| B3_S13_L001_R1_001.fastq.gz | RNA-Seq | 70.7 MB |
| B4_S14_L001_R1_001.fastq.gz | RNA-Seq | 81.2 MB |
| B5_S15_L001_R1_001.fastq.gz | RNA-Seq | 41.7 MB |
| B6_S16_L001_R1_001.fastq.gz | RNA-Seq | 44.8 MB |
| B7_S17_L001_R1_001.fastq.gz | RNA-Seq | 76.3 MB |
| B8_S18_L001_R1_001.fastq.gz | RNA-Seq | 78.7 MB |
| B9_S19_L001_R1_001.fastq.gz | RNA-Seq | 86.7 MB |
| C10_S8_L001_R1_001.fastq.gz | RNA-Seq | 321.2 MB |
| C11_S9_L001_R1_001.fastq.gz | RNA-Seq | 304.0 MB |
| C12_S10_L001_R1_001.fastq.gz | RNA-Seq | 696.3 KB |
| C1_S23_L001_R1_001.fastq.gz | RNA-Seq | 107.5 MB |
| C2_S24_L001_R1_001.fastq.gz | RNA-Seq | 123.1 MB |
| C3_S1_L001_R1_001.fastq.gz | RNA-Seq | 291.9 MB |
| C4_S2_L001_R1_001.fastq.gz | RNA-Seq | 367.6 MB |
| C5_S3_L001_R1_001.fastq.gz | RNA-Seq | 301.4 MB |
| C6_S4_L001_R1_001.fastq.gz | RNA-Seq | 289.3 MB |
| C7_S5_L001_R1_001.fastq.gz | RNA-Seq | 292.9 MB |
| C8_S6_L001_R1_001.fastq.gz | RNA-Seq | 295.3 MB |
| C9_S7_L001_R1_001.fastq.gz | RNA-Seq | 283.4 MB |
| D10_S18_L001_R1_001.fastq.gz | RNA-Seq | 273.6 MB |
| D11_S19_L001_R1_001.fastq.gz | RNA-Seq | 124.6 MB |
| D12_S20_L001_R1_001.fastq.gz | RNA-Seq | 406.1 MB |
| D1_S11_L001_R1_001.fastq.gz | RNA-Seq | 253.5 MB |
| D2_S12_L001_R1_001.fastq.gz | RNA-Seq | 270.0 MB |
| D3_S13_L001_R1_001.fastq.gz | RNA-Seq | 243.5 MB |
| D4_S14_L001_R1_001.fastq.gz | RNA-Seq | 314.6 MB |
| D5_S15_L001_R1_001.fastq.gz | RNA-Seq | 269.5 MB |
| D8_S16_L001_R1_001.fastq.gz | RNA-Seq | 280.6 MB |
| D9_S17_L001_R1_001.fastq.gz | RNA-Seq | 235.0 MB |
| H1_S21_L001_R1_001.fastq.gz | RNA-Seq | 300.6 MB |
| H2_S22_L001_R1_001.fastq.gz | RNA-Seq | 118.0 MB |
| SRR24557267_GSM7349587 | RNA-Seq | 300.0 MB |
| SRR24557268_GSM7349586 | RNA-Seq | 406.0 MB |
| SRR24557269_GSM7349585 | RNA-Seq | 124.0 MB |
| SRR24557270_GSM7349584 | RNA-Seq | 273.0 MB |
| SRR24557271_GSM7349583 | RNA-Seq | 235.0 MB |
| SRR24557272_GSM7349582 | RNA-Seq | 280.0 MB |
| SRR24557273_GSM7349581 | RNA-Seq | 269.0 MB |
| SRR24557274_GSM7349580 | RNA-Seq | 314.0 MB |
| SRR24557275_GSM7349579 | RNA-Seq | 243.0 MB |
| SRR24557276_GSM7349578 | RNA-Seq | 270.0 MB |
| SRR24557277_GSM7349577 | RNA-Seq | 253.0 MB |
| SRR24557278_GSM7349576 | RNA-Seq | |
| SRR24557279_GSM7349575 | RNA-Seq | 303.0 MB |
| SRR24557280_GSM7349574 | RNA-Seq | 321.0 MB |
| SRR24557281_GSM7349573 | RNA-Seq | 283.0 MB |
| SRR24557282_GSM7349572 | RNA-Seq | 295.0 MB |
| SRR24557283_GSM7349571 | RNA-Seq | 292.0 MB |
| SRR24557284_GSM7349570 | RNA-Seq | 289.0 MB |
| SRR24557285_GSM7349569 | RNA-Seq | 301.0 MB |
| SRR24557286_GSM7349568 | RNA-Seq | 367.0 MB |
| SRR24557287_GSM7349567 | RNA-Seq | 291.0 MB |
| SRR24557288_GSM7349566 | RNA-Seq | 123.0 MB |
| SRR24557289_GSM7349565 | RNA-Seq | 107.0 MB |
| SRR24557290_GSM7349564 | RNA-Seq | 125.0 MB |
| SRR24557291_GSM7349618 | RNA-Seq | 18.0 MB |
| SRR24557292_GSM7349617 | RNA-Seq | 18.0 MB |
| SRR24557293_GSM7349616 | RNA-Seq | 18.0 MB |
| SRR24557294_GSM7349615 | RNA-Seq | 18.0 MB |
| SRR24557295_GSM7349614 | RNA-Seq | 21.0 MB |
| SRR24557296_GSM7349613 | RNA-Seq | 21.0 MB |
| SRR24557297_GSM7349612 | RNA-Seq | 16.0 MB |
| SRR24557298_GSM7349611 | RNA-Seq | 18.0 MB |
| SRR24557299_GSM7349610 | RNA-Seq | 19.0 MB |
| SRR24557300_GSM7349609 | RNA-Seq | 20.0 MB |
| SRR24557301_GSM7349608 | RNA-Seq | 20.0 MB |
| SRR24557302_GSM7349607 | RNA-Seq | 20.0 MB |
| SRR24557303_GSM7349606 | RNA-Seq | 20.0 MB |
| SRR24557304_GSM7349605 | RNA-Seq | 21.0 MB |
| SRR24557305_GSM7349604 | RNA-Seq | 19.0 MB |
| SRR24557306_GSM7349603 | RNA-Seq | 18.0 MB |
| SRR24557307_GSM7349602 | RNA-Seq | 20.0 MB |
| SRR24557308_GSM7349601 | RNA-Seq | 19.0 MB |
| SRR24557309_GSM7349600 | RNA-Seq | 19.0 MB |
| SRR24557310_GSM7349599 | RNA-Seq | 19.0 MB |
| SRR24557311_GSM7349598 | RNA-Seq | 18.0 MB |
| SRR24557312_GSM7349597 | RNA-Seq | 18.0 MB |
| SRR24557313_GSM7349596 | RNA-Seq | 20.0 MB |
| SRR24557314_GSM7349595 | RNA-Seq | 16.0 MB |
| SRR24557315_GSM7349594 | RNA-Seq | 18.0 MB |
| SRR24557316_GSM7349593 | RNA-Seq | 20.0 MB |
| SRR24557317_GSM7349592 | RNA-Seq | 18.0 MB |
| SRR24557318_GSM7349591 | RNA-Seq | 20.0 MB |
| SRR24557319_GSM7349590 | RNA-Seq | 17.0 MB |
| SRR24557320_GSM7349589 | RNA-Seq | 15.0 MB |
| SRR24557321_GSM7349588 | RNA-Seq | 117.0 MB |
| SRR24557322_GSM7349563 | RNA-Seq | 94.0 MB |
| SRR24557323_GSM7349562 | RNA-Seq | 83.0 MB |
| SRR24557324_GSM7349561 | RNA-Seq | 86.0 MB |
| SRR24557325_GSM7349560 | RNA-Seq | 78.0 MB |
| SRR24557326_GSM7349559 | RNA-Seq | 76.0 MB |
| SRR24557327_GSM7349558 | RNA-Seq | 44.0 MB |
| SRR24557328_GSM7349557 | RNA-Seq | 41.0 MB |
| SRR24557329_GSM7349556 | RNA-Seq | 81.0 MB |
| SRR24557330_GSM7349555 | RNA-Seq | 70.0 MB |
| SRR24557331_GSM7349554 | RNA-Seq | 76.0 MB |
| SRR24557332_GSM7349553 | RNA-Seq | 94.0 MB |
| SRR24557333_GSM7349552 | RNA-Seq | 96.0 MB |
| SRR24557334_GSM7349551 | RNA-Seq | 83.0 MB |
| SRR24557335_GSM7349550 | RNA-Seq | 73.0 MB |
| SRR24557336_GSM7349549 | RNA-Seq | 83.0 MB |
| SRR24557337_GSM7349548 | RNA-Seq | 75.0 MB |
| SRR24557338_GSM7349547 | RNA-Seq | 75.0 MB |
| SRR24557339_GSM7349546 | RNA-Seq | 79.0 MB |
| SRR24557340_GSM7349545 | RNA-Seq | 79.0 MB |
| SRR24557341_GSM7349544 | RNA-Seq | 68.0 MB |
| SRR24557342_GSM7349543 | RNA-Seq | 83.0 MB |
Expanded repertoire of RNA-editing-based detection for RNA binding protein interactions (2)
Homo sapiens
60 data files
| File | Type | Size |
|---|---|---|
| A1_S1_L001_R1_001.fastq.gz | RNA-Seq | 1.3 GB |
| A2_S4_L001_R1_001.fastq.gz | RNA-Seq | 1.1 GB |
| A3_S8_L001_R1_001.fastq.gz | RNA-Seq | 1.6 GB |
| A4_S1_L001_R1_001.fastq.gz | RNA-Seq | 1.7 GB |
| B1_S2_L001_R1_001.fastq.gz | RNA-Seq | 1.4 GB |
| B2_S6_L001_R1_001.fastq.gz | RNA-Seq | 1.6 GB |
| B3_S9_L001_R1_001.fastq.gz | RNA-Seq | 1.9 GB |
| B4_S2_L001_R1_001.fastq.gz | RNA-Seq | 1.2 GB |
| B5_S5_L001_R1_001.fastq.gz | RNA-Seq | 1.1 GB |
| B6_S19_L002_R1_001.fastq.gz | RNA-Seq | 1.7 GB |
| B7_S12_L002_R1_001.fastq.gz | RNA-Seq | 1.5 GB |
| B8_S15_L002_R1_001.fastq.gz | RNA-Seq | 1.6 GB |
| C1_S3_L001_R1_001.fastq.gz | RNA-Seq | 1.2 GB |
| C2_S7_L001_R1_001.fastq.gz | RNA-Seq | 1.4 GB |
| C3_S10_L001_R1_001.fastq.gz | RNA-Seq | 1.8 GB |
| C4_S13_L002_R1_001.fastq.gz | RNA-Seq | 1.4 GB |
| HM-OT-10_S10_L001_R1_001.fastq.gz | RNA-Seq | 813.2 MB |
| HM-OT-11_S11_L001_R1_001.fastq.gz | RNA-Seq | 508.4 MB |
| HM-OT-12_S12_L001_R1_001.fastq.gz | RNA-Seq | 563.3 MB |
| HM-OT-13_S13_L001_R1_001.fastq.gz | RNA-Seq | 724.0 MB |
| HM-OT-14_S14_L001_R1_001.fastq.gz | RNA-Seq | 568.2 MB |
| HM-OT-1_S1_L001_R1_001.fastq.gz | RNA-Seq | 746.6 MB |
| HM-OT-2_S2_L001_R1_001.fastq.gz | RNA-Seq | 567.3 MB |
| HM-OT-3_S3_L001_R1_001.fastq.gz | RNA-Seq | 450.6 MB |
| HM-OT-4_S4_L001_R1_001.fastq.gz | RNA-Seq | 596.1 MB |
| HM-OT-5_S5_L001_R1_001.fastq.gz | RNA-Seq | 663.2 MB |
| HM-OT-6_S6_L001_R1_001.fastq.gz | RNA-Seq | 681.5 MB |
| HM-OT-7_S7_L001_R1_001.fastq.gz | RNA-Seq | 632.3 MB |
| HM-OT-8_S8_L001_R1_001.fastq.gz | RNA-Seq | 544.0 MB |
| HM-OT-9_S9_L001_R1_001.fastq.gz | RNA-Seq | 715.2 MB |
| SRR24557412_GSM7349648 | RNA-Seq | 568.0 MB |
| SRR24557413_GSM7349647 | RNA-Seq | 724.0 MB |
| SRR24557414_GSM7349646 | RNA-Seq | 563.0 MB |
| SRR24557415_GSM7349645 | RNA-Seq | 508.0 MB |
| SRR24557416_GSM7349644 | RNA-Seq | 813.0 MB |
| SRR24557417_GSM7349643 | RNA-Seq | 715.0 MB |
| SRR24557418_GSM7349642 | RNA-Seq | 544.0 MB |
| SRR24557419_GSM7349641 | RNA-Seq | 632.0 MB |
| SRR24557420_GSM7349640 | RNA-Seq | 681.0 MB |
| SRR24557421_GSM7349639 | RNA-Seq | 663.0 MB |
| SRR24557422_GSM7349638 | RNA-Seq | 596.0 MB |
| SRR24557423_GSM7349637 | RNA-Seq | 450.0 MB |
| SRR24557424_GSM7349636 | RNA-Seq | 567.0 MB |
| SRR24557425_GSM7349635 | RNA-Seq | 746.0 MB |
| SRR24557426_GSM7349634 | RNA-Seq | 1.4 GB |
| SRR24557427_GSM7349633 | RNA-Seq | 1.8 GB |
| SRR24557428_GSM7349632 | RNA-Seq | 1.4 GB |
| SRR24557429_GSM7349631 | RNA-Seq | 1.2 GB |
| SRR24557430_GSM7349630 | RNA-Seq | 1.6 GB |
| SRR24557431_GSM7349629 | RNA-Seq | 1.5 GB |
| SRR24557432_GSM7349628 | RNA-Seq | 1.7 GB |
| SRR24557433_GSM7349627 | RNA-Seq | 1.1 GB |
| SRR24557434_GSM7349626 | RNA-Seq | 1.2 GB |
| SRR24557435_GSM7349625 | RNA-Seq | 1.9 GB |
| SRR24557436_GSM7349624 | RNA-Seq | 1.6 GB |
| SRR24557437_GSM7349623 | RNA-Seq | 1.4 GB |
| SRR24557438_GSM7349622 | RNA-Seq | 1.7 GB |
| SRR24557439_GSM7349621 | RNA-Seq | 1.5 GB |
| SRR24557440_GSM7349620 | RNA-Seq | 1.1 GB |
| SRR24557441_GSM7349619 | RNA-Seq | 1.3 GB |
Expanded repertoire of RNA-editing-based detection for RNA binding protein interactions (4)
Homo sapiens
48 data files
| File | Type | Size |
|---|---|---|
| SRR24557488_GSM7349701 | RNA-Seq | 2.9 GB |
| SRR24557489_GSM7349700 | RNA-Seq | 3.9 GB |
| SRR24557490_GSM7349699 | RNA-Seq | 4.2 GB |
| SRR24557491_GSM7349698 | RNA-Seq | 4.5 GB |
| SRR24557492_GSM7349697 | RNA-Seq | 3.1 GB |
| SRR24557493_GSM7349696 | RNA-Seq | 4.2 GB |
| SRR24557494_GSM7349695 | RNA-Seq | 3.4 GB |
| SRR24557495_GSM7349694 | RNA-Seq | 4.8 GB |
| SRR24557496_GSM7349693 | RNA-Seq | 2.0 GB |
| SRR24557497_GSM7349692 | RNA-Seq | 2.9 GB |
| SRR24557498_GSM7349691 | RNA-Seq | 3.4 GB |
| SRR24557499_GSM7349690 | RNA-Seq | 4.3 GB |
| SRR24557500_GSM7349689 | RNA-Seq | 6.5 GB |
| SRR24557501_GSM7349688 | RNA-Seq | 3.2 GB |
| SRR24557502_GSM7349687 | RNA-Seq | 3.2 GB |
| SRR24557503_GSM7349686 | RNA-Seq | 1.8 GB |
| SRR24557504_GSM7349685 | RNA-Seq | 3.2 GB |
| SRR24557505_GSM7349684 | RNA-Seq | 6.7 GB |
| SRR24557506_GSM7349683 | RNA-Seq | 6.1 GB |
| SRR24557507_GSM7349682 | RNA-Seq | 3.6 GB |
| SRR24557508_GSM7349681 | RNA-Seq | 3.0 GB |
| SRR24557509_GSM7349680 | RNA-Seq | 3.6 GB |
| SRR24557510_GSM7349679 | RNA-Seq | 5.1 GB |
| SRR24557511_GSM7349678 | RNA-Seq | 6.1 GB |
| Torin_RS_01_S1_L004_R1_001.fastq.gz | RNA-Seq | 2.0 GB |
| Torin_RS_02_S2_L004_R1_001.fastq.gz | RNA-Seq | 4.8 GB |
| Torin_RS_03_S3_L004_R1_001.fastq.gz | RNA-Seq | 3.4 GB |
| Torin_RS_04_S4_L004_R1_001.fastq.gz | RNA-Seq | 4.2 GB |
| Torin_RS_05_S5_L004_R1_001.fastq.gz | RNA-Seq | 3.9 GB |
| Torin_RS_06_S6_L004_R1_001.fastq.gz | RNA-Seq | 2.9 GB |
| Torin_RS_07_S7_L004_R1_001.fastq.gz | RNA-Seq | 4.3 GB |
| Torin_RS_08_S8_L004_R1_001.fastq.gz | RNA-Seq | 3.4 GB |
| Torin_RS_09_S9_L004_R1_001.fastq.gz | RNA-Seq | 2.9 GB |
| Torin_RS_10_S10_L004_R1_001.fastq.gz | RNA-Seq | 4.2 GB |
| Torin_RS_11_S11_L004_R1_001.fastq.gz | RNA-Seq | 3.1 GB |
| Torin_RS_12_S12_L004_R1_001.fastq.gz | RNA-Seq | 4.5 GB |
| Torin_RS_13_S13_L004_R1_001.fastq.gz | RNA-Seq | 3.0 GB |
| Torin_RS_14_S14_L004_R1_001.fastq.gz | RNA-Seq | 3.6 GB |
| Torin_RS_15_S15_L004_R1_001.fastq.gz | RNA-Seq | 6.1 GB |
| Torin_RS_16_S16_L004_R1_001.fastq.gz | RNA-Seq | 3.2 GB |
| Torin_RS_17_S17_L004_R1_001.fastq.gz | RNA-Seq | 3.2 GB |
| Torin_RS_18_S18_L004_R1_001.fastq.gz | RNA-Seq | 6.5 GB |
| Torin_RS_19_S19_L004_R1_001.fastq.gz | RNA-Seq | 6.1 GB |
| Torin_RS_20_S20_L004_R1_001.fastq.gz | RNA-Seq | 5.1 GB |
| Torin_RS_21_S21_L004_R1_001.fastq.gz | RNA-Seq | 3.6 GB |
| Torin_RS_22_S22_L004_R1_001.fastq.gz | RNA-Seq | 6.7 GB |
| Torin_RS_23_S23_L004_R1_001.fastq.gz | RNA-Seq | 3.2 GB |
| Torin_RS_24_S24_L004_R1_001.fastq.gz | RNA-Seq | 1.8 GB |
Expanded repertoire of RNA-editing-based detection for RNA binding protein interactions (5)
Homo sapiens
72 data files
| File | Type | Size |
|---|---|---|
| 10_S10_L001_R1_001.fastq.gz | RNA-Seq | 15.7 MB |
| 11_S11_L001_R1_001.fastq.gz | RNA-Seq | 9.7 MB |
| 12_S12_L001_R1_001.fastq.gz | RNA-Seq | 12.0 MB |
| 13_S13_L001_R1_001.fastq.gz | RNA-Seq | 15.1 MB |
| 14_S14_L001_R1_001.fastq.gz | RNA-Seq | 12.2 MB |
| 15_S15_L001_R1_001.fastq.gz | RNA-Seq | 12.8 MB |
| 16_S16_L001_R1_001.fastq.gz | RNA-Seq | 13.9 MB |
| 17_S17_L001_R1_001.fastq.gz | RNA-Seq | 12.4 MB |
| 18_S18_L001_R1_001.fastq.gz | RNA-Seq | 9.8 MB |
| 19_S19_L001_R1_001.fastq.gz | RNA-Seq | 14.2 MB |
| 1_S1_L001_R1_001.fastq.gz | RNA-Seq | 15.8 MB |
| 20_S20_L001_R1_001.fastq.gz | RNA-Seq | 14.9 MB |
| 21_S21_L001_R1_001.fastq.gz | RNA-Seq | 8.8 MB |
| 22_S22_L001_R1_001.fastq.gz | RNA-Seq | 7.9 MB |
| 23_S23_L001_R1_001.fastq.gz | RNA-Seq | 11.1 MB |
| 24_S24_L001_R1_001.fastq.gz | RNA-Seq | 9.7 MB |
| 2_S2_L001_R1_001.fastq.gz | RNA-Seq | 15.8 MB |
| 3_S3_L001_R1_001.fastq.gz | RNA-Seq | 13.6 MB |
| 40_S40_L001_R1_001.fastq.gz | RNA-Seq | 19.7 MB |
| 41_S41_L001_R1_001.fastq.gz | RNA-Seq | 18.2 MB |
| 42_S42_L001_R1_001.fastq.gz | RNA-Seq | 17.6 MB |
| 43_S43_L001_R1_001.fastq.gz | RNA-Seq | 18.9 MB |
| 44_S44_L001_R1_001.fastq.gz | RNA-Seq | 17.4 MB |
| 45_S45_L001_R1_001.fastq.gz | RNA-Seq | 17.6 MB |
| 46_S46_L001_R1_001.fastq.gz | RNA-Seq | 17.4 MB |
| 47_S47_L001_R1_001.fastq.gz | RNA-Seq | 21.0 MB |
| 48_S48_L001_R1_001.fastq.gz | RNA-Seq | 19.4 MB |
| 49_S49_L001_R1_001.fastq.gz | RNA-Seq | 17.6 MB |
| 4_S4_L001_R1_001.fastq.gz | RNA-Seq | 18.2 MB |
| 50_S50_L001_R1_001.fastq.gz | RNA-Seq | 18.4 MB |
| 51_S51_L001_R1_001.fastq.gz | RNA-Seq | 19.7 MB |
| 5_S5_L001_R1_001.fastq.gz | RNA-Seq | 10.9 MB |
| 6_S6_L001_R1_001.fastq.gz | RNA-Seq | 14.1 MB |
| 7_S7_L001_R1_001.fastq.gz | RNA-Seq | 14.4 MB |
| 8_S8_L001_R1_001.fastq.gz | RNA-Seq | 15.7 MB |
| 9_S9_L001_R1_001.fastq.gz | RNA-Seq | 15.4 MB |
| SRR24557450_GSM7349737 | RNA-Seq | 9.0 MB |
| SRR24557451_GSM7349736 | RNA-Seq | 11.0 MB |
| SRR24557452_GSM7349735 | RNA-Seq | 7.0 MB |
| SRR24557453_GSM7349734 | RNA-Seq | 8.0 MB |
| SRR24557454_GSM7349733 | RNA-Seq | 14.0 MB |
| SRR24557455_GSM7349732 | RNA-Seq | 14.0 MB |
| SRR24557456_GSM7349731 | RNA-Seq | 9.0 MB |
| SRR24557457_GSM7349730 | RNA-Seq | 12.0 MB |
| SRR24557458_GSM7349729 | RNA-Seq | 13.0 MB |
| SRR24557459_GSM7349728 | RNA-Seq | 12.0 MB |
| SRR24557460_GSM7349727 | RNA-Seq | 12.0 MB |
| SRR24557461_GSM7349726 | RNA-Seq | 15.0 MB |
| SRR24557462_GSM7349725 | RNA-Seq | 11.0 MB |
| SRR24557463_GSM7349724 | RNA-Seq | 9.0 MB |
| SRR24557464_GSM7349723 | RNA-Seq | 15.0 MB |
| SRR24557465_GSM7349722 | RNA-Seq | 15.0 MB |
| SRR24557466_GSM7349721 | RNA-Seq | 15.0 MB |
| SRR24557467_GSM7349720 | RNA-Seq | 14.0 MB |
| SRR24557468_GSM7349719 | RNA-Seq | 14.0 MB |
| SRR24557469_GSM7349718 | RNA-Seq | 10.0 MB |
| SRR24557470_GSM7349717 | RNA-Seq | 18.0 MB |
| SRR24557471_GSM7349716 | RNA-Seq | 13.0 MB |
| SRR24557472_GSM7349715 | RNA-Seq | 15.0 MB |
| SRR24557473_GSM7349714 | RNA-Seq | 15.0 MB |
| SRR24557474_GSM7349713 | RNA-Seq | 19.0 MB |
| SRR24557475_GSM7349712 | RNA-Seq | 18.0 MB |
| SRR24557476_GSM7349711 | RNA-Seq | 17.0 MB |
| SRR24557477_GSM7349710 | RNA-Seq | 19.0 MB |
| SRR24557478_GSM7349709 | RNA-Seq | 20.0 MB |
| SRR24557479_GSM7349708 | RNA-Seq | 17.0 MB |
| SRR24557480_GSM7349707 | RNA-Seq | 17.0 MB |
| SRR24557481_GSM7349706 | RNA-Seq | 17.0 MB |
| SRR24557482_GSM7349705 | RNA-Seq | 18.0 MB |
| SRR24557483_GSM7349704 | RNA-Seq | 17.0 MB |
| SRR24557484_GSM7349703 | RNA-Seq | 18.0 MB |
| SRR24557485_GSM7349702 | RNA-Seq | 19.0 MB |
Potentially related datasets 2
These accessions were text-mined from the PMC full text. They may be referenced for comparison, cited from other studies, or otherwise mentioned without being primary data for this paper.
Analysis pipelines 6
| Pipeline | Assay | Steps | Dataset |
|---|---|---|---|
| GSE232513 Data Processing geo_data_processing | — | 3 | GSE232513 |
| GSE232514 RNA-seq Data Processing geo_data_processing | RNA-seq | 5 | GSE232514 |
| GSE232515 Data Processing geo_data_processing | — | 4 | GSE232515 |
| GSE232518 Data Processing geo_data_processing | — | 3 | GSE232518 |
| GSE232519 Data Processing geo_data_processing | — | 3 | GSE232519 |
| GSE232520 Data Processing geo_data_processing | — | 3 | GSE232520 |
Funding 12 grants
| Grant | Funder |
|---|---|
| U24 HG009889 | NHGRI NIH HHS (United States) |
| R01 HG004659 | NHGRI NIH HHS (United States) |
| U24 HG011735 | NHGRI NIH HHS (United States) |
| RF1 MH126719 | NIMH NIH HHS (United States) |
| R01 HG011864 | NHGRI NIH HHS (United States) |
| T32 CA067754 | NCI NIH HHS (United States) |
| R01 NS103172 | NINDS NIH HHS (United States) |
| U41 HG009889 | NHGRI NIH HHS (United States) |
| K12 GM068524 | NIGMS NIH HHS (United States) |
| R35 GM138317 | NIGMS NIH HHS (United States) |
| T32 GM112584 | NIGMS NIH HHS (United States) |
| R01 HG010646 | NHGRI NIH HHS (United States) |