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Expanded palette of RNA base editors for comprehensive RBP-RNA interactome studies.

Nature communications · 2024 · Vol. 15 (1) · pp. 875

Abstract

RNA binding proteins (RBPs) are key regulators of RNA processing and cellular function. Technologies to discover RNA targets of RBPs such as TRIBE (targets of RNA binding proteins identified by editing) and STAMP (surveying targets by APOBEC1 mediated profiling) utilize fusions of RNA base-editors (rBEs) to RBPs to circumvent the limitations of immunoprecipitation (CLIP)-based methods that require enzymatic digestion and large amounts of input material. To broaden the repertoire of rBEs suitable for editing-based RBP-RNA interaction studies, we have devised experimental and computational assays in a framework called PRINTER (protein-RNA interaction-based triaging of enzymes that edit RNA) to assess over thirty A-to-I and C-to-U rBEs, allowing us to identify rBEs that expand the characterization of binding patterns for both sequence-specific and broad-binding RBPs. We also propose specific rBEs suitable for dual-RBP applications. We show that the choice between single or multiple rBEs to fuse with a given RBP or pair of RBPs hinges on the editing biases of the rBEs and the binding preferences of the RBPs themselves. We believe our study streamlines and enhances the selection of rBEs for the next generation of RBP-RNA target discovery.

Publication Types

["Journal Article"]

Keywords

[]

MeSH Terms

["RNA", "Binding Sites", "RNA-Binding Proteins", "RNA Processing, Post-Transcriptional"]

Funding

U24 HG009889 NHGRI NIH HHS (United States)
R01 HG004659 NHGRI NIH HHS (United States)
U24 HG011735 NHGRI NIH HHS (United States)
RF1 MH126719 NIMH NIH HHS (United States)
R01 HG011864 NHGRI NIH HHS (United States)
T32 CA067754 NCI NIH HHS (United States)
R01 NS103172 NINDS NIH HHS (United States)
U41 HG009889 NHGRI NIH HHS (United States)
K12 GM068524 NIGMS NIH HHS (United States)
R35 GM138317 NIGMS NIH HHS (United States)
T32 GM112584 NIGMS NIH HHS (United States)
R01 HG010646 NHGRI NIH HHS (United States)

Linked Datasets (6)

GSE232515 GSE via ncbi_elink
GEO

Expanded repertoire for RNA-editing-based detection for RNA binding protein interactions (3)

Homo sapiens
96 data files
FileTypeSize
Hugo-A1_S1_L001_R1_001.fastq.gz RNA-Seq 474.9 MB
Hugo-A1_S1_L001_R1_001.fastq.gz RNA-Seq 474.9 MB
Hugo-A1_S1_L001_R1_001.fastq.gz RNA-Seq 474.9 MB
Hugo-A1_S1_L001_R1_001.fastq.gz RNA-Seq 474.9 MB
Hugo-A2_S2_L001_R1_001.fastq.gz RNA-Seq 482.3 MB
Hugo-A2_S2_L001_R1_001.fastq.gz RNA-Seq 482.3 MB
Hugo-A2_S2_L001_R1_001.fastq.gz RNA-Seq 482.3 MB
Hugo-A2_S2_L001_R1_001.fastq.gz RNA-Seq 482.3 MB
Hugo-A3_S11_L001_R1_001.fastq.gz RNA-Seq 342.7 MB
Hugo-A3_S11_L001_R1_001.fastq.gz RNA-Seq 342.7 MB
Hugo-A3_S11_L001_R1_001.fastq.gz RNA-Seq 342.7 MB
Hugo-A3_S11_L001_R1_001.fastq.gz RNA-Seq 342.7 MB
Hugo-B2_S7_L001_R1_001.fastq.gz RNA-Seq 375.6 MB
Hugo-B2_S7_L001_R1_001.fastq.gz RNA-Seq 375.6 MB
Hugo-B2_S7_L001_R1_001.fastq.gz RNA-Seq 375.6 MB
Hugo-B2_S7_L001_R1_001.fastq.gz RNA-Seq 375.6 MB
Hugo-B3_S8_L001_R1_001.fastq.gz RNA-Seq 461.3 MB
Hugo-B3_S8_L001_R1_001.fastq.gz RNA-Seq 461.3 MB
Hugo-B3_S8_L001_R1_001.fastq.gz RNA-Seq 461.3 MB
Hugo-B3_S8_L001_R1_001.fastq.gz RNA-Seq 461.3 MB
Hugo-B4_S14_L001_R1_001.fastq.gz RNA-Seq 437.5 MB
Hugo-B4_S14_L001_R1_001.fastq.gz RNA-Seq 437.5 MB
Hugo-B4_S14_L001_R1_001.fastq.gz RNA-Seq 437.5 MB
Hugo-B4_S14_L001_R1_001.fastq.gz RNA-Seq 437.5 MB
Hugo-B5_S9_L001_R1_001.fastq.gz RNA-Seq 502.8 MB
Hugo-B5_S9_L001_R1_001.fastq.gz RNA-Seq 502.8 MB
Hugo-B5_S9_L001_R1_001.fastq.gz RNA-Seq 502.8 MB
Hugo-B5_S9_L001_R1_001.fastq.gz RNA-Seq 502.8 MB
Hugo-B6_S10_L001_R1_001.fastq.gz RNA-Seq 545.7 MB
Hugo-B6_S10_L001_R1_001.fastq.gz RNA-Seq 545.7 MB
Hugo-B6_S10_L001_R1_001.fastq.gz RNA-Seq 545.7 MB
Hugo-B6_S10_L001_R1_001.fastq.gz RNA-Seq 545.7 MB
Hugo-B7_S15_L001_R1_001.fastq.gz RNA-Seq 366.1 MB
Hugo-B7_S15_L001_R1_001.fastq.gz RNA-Seq 366.1 MB
Hugo-B7_S15_L001_R1_001.fastq.gz RNA-Seq 366.1 MB
Hugo-B7_S15_L001_R1_001.fastq.gz RNA-Seq 366.1 MB
Hugo-D4_S75_L002_R1_001.fastq.gz RNA-Seq 488.1 MB
Hugo-D4_S75_L002_R1_001.fastq.gz RNA-Seq 488.1 MB
Hugo-D4_S75_L002_R1_001.fastq.gz RNA-Seq 488.1 MB
Hugo-D4_S75_L002_R1_001.fastq.gz RNA-Seq 488.1 MB
Hugo-D5_S76_L002_R1_001.fastq.gz RNA-Seq 534.0 MB
Hugo-D5_S76_L002_R1_001.fastq.gz RNA-Seq 534.0 MB
Hugo-D5_S76_L002_R1_001.fastq.gz RNA-Seq 534.0 MB
Hugo-D5_S76_L002_R1_001.fastq.gz RNA-Seq 534.0 MB
Hugo-D6_S30_L002_R1_001.fastq.gz RNA-Seq 439.1 MB
Hugo-D6_S30_L002_R1_001.fastq.gz RNA-Seq 439.1 MB
Hugo-D6_S30_L002_R1_001.fastq.gz RNA-Seq 439.1 MB
Hugo-D6_S30_L002_R1_001.fastq.gz RNA-Seq 439.1 MB
Hugo-D7_S77_L002_R1_001.fastq.gz RNA-Seq 521.1 MB
Hugo-D7_S77_L002_R1_001.fastq.gz RNA-Seq 521.1 MB
Hugo-D7_S77_L002_R1_001.fastq.gz RNA-Seq 521.1 MB
Hugo-D7_S77_L002_R1_001.fastq.gz RNA-Seq 521.1 MB
Hugo-D8_S78_L002_R1_001.fastq.gz RNA-Seq 414.7 MB
Hugo-D8_S78_L002_R1_001.fastq.gz RNA-Seq 414.7 MB
Hugo-D8_S78_L002_R1_001.fastq.gz RNA-Seq 414.7 MB
Hugo-D8_S78_L002_R1_001.fastq.gz RNA-Seq 414.7 MB
Hugo-E1_S31_L002_R1_001.fastq.gz RNA-Seq 432.5 MB
Hugo-E1_S31_L002_R1_001.fastq.gz RNA-Seq 432.5 MB
Hugo-E1_S31_L002_R1_001.fastq.gz RNA-Seq 432.5 MB
Hugo-E1_S31_L002_R1_001.fastq.gz RNA-Seq 432.5 MB
Hugo-E2_S79_L002_R1_001.fastq.gz RNA-Seq 623.7 MB
Hugo-E2_S79_L002_R1_001.fastq.gz RNA-Seq 623.7 MB
Hugo-E2_S79_L002_R1_001.fastq.gz RNA-Seq 623.7 MB
Hugo-E2_S79_L002_R1_001.fastq.gz RNA-Seq 623.7 MB
Hugo-E3_S80_L002_R1_001.fastq.gz RNA-Seq 571.2 MB
Hugo-E3_S80_L002_R1_001.fastq.gz RNA-Seq 571.2 MB
Hugo-E3_S80_L002_R1_001.fastq.gz RNA-Seq 571.2 MB
Hugo-E3_S80_L002_R1_001.fastq.gz RNA-Seq 571.2 MB
Hugo-E4_S32_L002_R1_001.fastq.gz RNA-Seq 550.4 MB
Hugo-E4_S32_L002_R1_001.fastq.gz RNA-Seq 550.4 MB
Hugo-E4_S32_L002_R1_001.fastq.gz RNA-Seq 550.4 MB
Hugo-E4_S32_L002_R1_001.fastq.gz RNA-Seq 550.4 MB
Hugo-E5_S81_L002_R1_001.fastq.gz RNA-Seq 480.7 MB
Hugo-E5_S81_L002_R1_001.fastq.gz RNA-Seq 480.7 MB
Hugo-E5_S81_L002_R1_001.fastq.gz RNA-Seq 480.7 MB
Hugo-E5_S81_L002_R1_001.fastq.gz RNA-Seq 480.7 MB
Hugo-E6_S82_L002_R1_001.fastq.gz RNA-Seq 515.3 MB
Hugo-E6_S82_L002_R1_001.fastq.gz RNA-Seq 515.3 MB
Hugo-E6_S82_L002_R1_001.fastq.gz RNA-Seq 515.3 MB
Hugo-E6_S82_L002_R1_001.fastq.gz RNA-Seq 515.3 MB
Hugo-E7_S33_L002_R1_001.fastq.gz RNA-Seq 456.3 MB
Hugo-E7_S33_L002_R1_001.fastq.gz RNA-Seq 456.3 MB
Hugo-E7_S33_L002_R1_001.fastq.gz RNA-Seq 456.3 MB
Hugo-E7_S33_L002_R1_001.fastq.gz RNA-Seq 456.3 MB
Hugo-E8_S83_L002_R1_001.fastq.gz RNA-Seq 474.5 MB
Hugo-E8_S83_L002_R1_001.fastq.gz RNA-Seq 474.5 MB
Hugo-E8_S83_L002_R1_001.fastq.gz RNA-Seq 474.5 MB
Hugo-E8_S83_L002_R1_001.fastq.gz RNA-Seq 474.5 MB
Hugo-F1_S84_L002_R1_001.fastq.gz RNA-Seq 504.2 MB
Hugo-F1_S84_L002_R1_001.fastq.gz RNA-Seq 504.2 MB
Hugo-F1_S84_L002_R1_001.fastq.gz RNA-Seq 504.2 MB
Hugo-F1_S84_L002_R1_001.fastq.gz RNA-Seq 504.2 MB
Hugo-F2_S34_L002_R1_001.fastq.gz RNA-Seq 498.8 MB
Hugo-F2_S34_L002_R1_001.fastq.gz RNA-Seq 498.8 MB
Hugo-F2_S34_L002_R1_001.fastq.gz RNA-Seq 498.8 MB
Hugo-F2_S34_L002_R1_001.fastq.gz RNA-Seq 498.8 MB
GSE232520 GSE via ncbi_elink
GEO

Expanded palette of RNA base editors for comprehensive RBP-RNA interactome studies

Homo sapiens
GSE232513 GSE via ncbi_elink
GEO

Expanded repertoire of RNA-editing-based detection for RNA binding protein interactions (1)

Homo sapiens
304 data files
FileTypeSize
10_S10_L001_R1_001.fastq.gz RNA-Seq 18.7 MB
10_S10_L001_R1_001.fastq.gz RNA-Seq 18.7 MB
10_S10_L001_R1_001.fastq.gz RNA-Seq 18.7 MB
10_S10_L001_R1_001.fastq.gz RNA-Seq 18.7 MB
11_S11_L001_R1_001.fastq.gz RNA-Seq 19.1 MB
11_S11_L001_R1_001.fastq.gz RNA-Seq 19.1 MB
11_S11_L001_R1_001.fastq.gz RNA-Seq 19.1 MB
11_S11_L001_R1_001.fastq.gz RNA-Seq 19.1 MB
12_S12_L001_R1_001.fastq.gz RNA-Seq 19.7 MB
12_S12_L001_R1_001.fastq.gz RNA-Seq 19.7 MB
12_S12_L001_R1_001.fastq.gz RNA-Seq 19.7 MB
12_S12_L001_R1_001.fastq.gz RNA-Seq 19.7 MB
13_S13_L001_R1_001.fastq.gz RNA-Seq 19.2 MB
13_S13_L001_R1_001.fastq.gz RNA-Seq 19.2 MB
13_S13_L001_R1_001.fastq.gz RNA-Seq 19.2 MB
13_S13_L001_R1_001.fastq.gz RNA-Seq 19.2 MB
14_S14_L001_R1_001.fastq.gz RNA-Seq 20.5 MB
14_S14_L001_R1_001.fastq.gz RNA-Seq 20.5 MB
14_S14_L001_R1_001.fastq.gz RNA-Seq 20.5 MB
14_S14_L001_R1_001.fastq.gz RNA-Seq 20.5 MB
15_S15_L001_R1_001.fastq.gz RNA-Seq 18.6 MB
15_S15_L001_R1_001.fastq.gz RNA-Seq 18.6 MB
15_S15_L001_R1_001.fastq.gz RNA-Seq 18.6 MB
15_S15_L001_R1_001.fastq.gz RNA-Seq 18.6 MB
16_S16_L001_R1_001.fastq.gz RNA-Seq 19.7 MB
16_S16_L001_R1_001.fastq.gz RNA-Seq 19.7 MB
16_S16_L001_R1_001.fastq.gz RNA-Seq 19.7 MB
16_S16_L001_R1_001.fastq.gz RNA-Seq 19.7 MB
17_S17_L001_R1_001.fastq.gz RNA-Seq 21.5 MB
17_S17_L001_R1_001.fastq.gz RNA-Seq 21.5 MB
17_S17_L001_R1_001.fastq.gz RNA-Seq 21.5 MB
17_S17_L001_R1_001.fastq.gz RNA-Seq 21.5 MB
18_S18_L001_R1_001.fastq.gz RNA-Seq 20.6 MB
18_S18_L001_R1_001.fastq.gz RNA-Seq 20.6 MB
18_S18_L001_R1_001.fastq.gz RNA-Seq 20.6 MB
18_S18_L001_R1_001.fastq.gz RNA-Seq 20.6 MB
19_S19_L001_R1_001.fastq.gz RNA-Seq 20.4 MB
19_S19_L001_R1_001.fastq.gz RNA-Seq 20.4 MB
19_S19_L001_R1_001.fastq.gz RNA-Seq 20.4 MB
19_S19_L001_R1_001.fastq.gz RNA-Seq 20.4 MB
1_S1_L001_R1_001.fastq.gz RNA-Seq 15.9 MB
1_S1_L001_R1_001.fastq.gz RNA-Seq 15.9 MB
1_S1_L001_R1_001.fastq.gz RNA-Seq 15.9 MB
1_S1_L001_R1_001.fastq.gz RNA-Seq 15.9 MB
20_S20_L001_R1_001.fastq.gz RNA-Seq 20.4 MB
20_S20_L001_R1_001.fastq.gz RNA-Seq 20.4 MB
20_S20_L001_R1_001.fastq.gz RNA-Seq 20.4 MB
20_S20_L001_R1_001.fastq.gz RNA-Seq 20.4 MB
21_S21_L001_R1_001.fastq.gz RNA-Seq 20.2 MB
21_S21_L001_R1_001.fastq.gz RNA-Seq 20.2 MB
21_S21_L001_R1_001.fastq.gz RNA-Seq 20.2 MB
21_S21_L001_R1_001.fastq.gz RNA-Seq 20.2 MB
22_S22_L001_R1_001.fastq.gz RNA-Seq 19.9 MB
22_S22_L001_R1_001.fastq.gz RNA-Seq 19.9 MB
22_S22_L001_R1_001.fastq.gz RNA-Seq 19.9 MB
22_S22_L001_R1_001.fastq.gz RNA-Seq 19.9 MB
23_S23_L001_R1_001.fastq.gz RNA-Seq 18.9 MB
23_S23_L001_R1_001.fastq.gz RNA-Seq 18.9 MB
23_S23_L001_R1_001.fastq.gz RNA-Seq 18.9 MB
23_S23_L001_R1_001.fastq.gz RNA-Seq 18.9 MB
24_S24_L001_R1_001.fastq.gz RNA-Seq 16.6 MB
24_S24_L001_R1_001.fastq.gz RNA-Seq 16.6 MB
24_S24_L001_R1_001.fastq.gz RNA-Seq 16.6 MB
24_S24_L001_R1_001.fastq.gz RNA-Seq 16.6 MB
25_S25_L001_R1_001.fastq.gz RNA-Seq 21.9 MB
25_S25_L001_R1_001.fastq.gz RNA-Seq 21.9 MB
25_S25_L001_R1_001.fastq.gz RNA-Seq 21.9 MB
25_S25_L001_R1_001.fastq.gz RNA-Seq 21.9 MB
26_S26_L001_R1_001.fastq.gz RNA-Seq 21.1 MB
26_S26_L001_R1_001.fastq.gz RNA-Seq 21.1 MB
26_S26_L001_R1_001.fastq.gz RNA-Seq 21.1 MB
26_S26_L001_R1_001.fastq.gz RNA-Seq 21.1 MB
27_S27_L001_R1_001.fastq.gz RNA-Seq 19.0 MB
27_S27_L001_R1_001.fastq.gz RNA-Seq 19.0 MB
27_S27_L001_R1_001.fastq.gz RNA-Seq 19.0 MB
27_S27_L001_R1_001.fastq.gz RNA-Seq 19.0 MB
28_S28_L001_R1_001.fastq.gz RNA-Seq 18.9 MB
28_S28_L001_R1_001.fastq.gz RNA-Seq 18.9 MB
28_S28_L001_R1_001.fastq.gz RNA-Seq 18.9 MB
28_S28_L001_R1_001.fastq.gz RNA-Seq 18.9 MB
29_S29_L001_R1_001.fastq.gz RNA-Seq 18.7 MB
29_S29_L001_R1_001.fastq.gz RNA-Seq 18.7 MB
29_S29_L001_R1_001.fastq.gz RNA-Seq 18.7 MB
29_S29_L001_R1_001.fastq.gz RNA-Seq 18.7 MB
2_S2_L001_R1_001.fastq.gz RNA-Seq 17.6 MB
2_S2_L001_R1_001.fastq.gz RNA-Seq 17.6 MB
2_S2_L001_R1_001.fastq.gz RNA-Seq 17.6 MB
2_S2_L001_R1_001.fastq.gz RNA-Seq 17.6 MB
30_S30_L001_R1_001.fastq.gz RNA-Seq 18.2 MB
30_S30_L001_R1_001.fastq.gz RNA-Seq 18.2 MB
30_S30_L001_R1_001.fastq.gz RNA-Seq 18.2 MB
30_S30_L001_R1_001.fastq.gz RNA-Seq 18.2 MB
3_S3_L001_R1_001.fastq.gz RNA-Seq 20.2 MB
3_S3_L001_R1_001.fastq.gz RNA-Seq 20.2 MB
3_S3_L001_R1_001.fastq.gz RNA-Seq 20.2 MB
3_S3_L001_R1_001.fastq.gz RNA-Seq 20.2 MB
4_S4_L001_R1_001.fastq.gz RNA-Seq 19.0 MB
4_S4_L001_R1_001.fastq.gz RNA-Seq 19.0 MB
4_S4_L001_R1_001.fastq.gz RNA-Seq 19.0 MB
4_S4_L001_R1_001.fastq.gz RNA-Seq 19.0 MB
5_S5_L001_R1_001.fastq.gz RNA-Seq 20.1 MB
5_S5_L001_R1_001.fastq.gz RNA-Seq 20.1 MB
5_S5_L001_R1_001.fastq.gz RNA-Seq 20.1 MB
5_S5_L001_R1_001.fastq.gz RNA-Seq 20.1 MB
6_S6_L001_R1_001.fastq.gz RNA-Seq 18.8 MB
6_S6_L001_R1_001.fastq.gz RNA-Seq 18.8 MB
6_S6_L001_R1_001.fastq.gz RNA-Seq 18.8 MB
6_S6_L001_R1_001.fastq.gz RNA-Seq 18.8 MB
7_S7_L001_R1_001.fastq.gz RNA-Seq 16.4 MB
7_S7_L001_R1_001.fastq.gz RNA-Seq 16.4 MB
7_S7_L001_R1_001.fastq.gz RNA-Seq 16.4 MB
7_S7_L001_R1_001.fastq.gz RNA-Seq 16.4 MB
8_S8_L001_R1_001.fastq.gz RNA-Seq 20.0 MB
8_S8_L001_R1_001.fastq.gz RNA-Seq 20.0 MB
8_S8_L001_R1_001.fastq.gz RNA-Seq 20.0 MB
8_S8_L001_R1_001.fastq.gz RNA-Seq 20.0 MB
9_S9_L001_R1_001.fastq.gz RNA-Seq 18.7 MB
9_S9_L001_R1_001.fastq.gz RNA-Seq 18.7 MB
9_S9_L001_R1_001.fastq.gz RNA-Seq 18.7 MB
9_S9_L001_R1_001.fastq.gz RNA-Seq 18.7 MB
A10_S8_L001_R1_001.fastq.gz RNA-Seq 73.0 MB
A10_S8_L001_R1_001.fastq.gz RNA-Seq 73.0 MB
A10_S8_L001_R1_001.fastq.gz RNA-Seq 73.0 MB
A10_S8_L001_R1_001.fastq.gz RNA-Seq 73.0 MB
A11_S9_L001_R1_001.fastq.gz RNA-Seq 84.0 MB
A11_S9_L001_R1_001.fastq.gz RNA-Seq 84.0 MB
A11_S9_L001_R1_001.fastq.gz RNA-Seq 84.0 MB
A11_S9_L001_R1_001.fastq.gz RNA-Seq 84.0 MB
A12_S10_L001_R1_001.fastq.gz RNA-Seq 96.3 MB
A12_S10_L001_R1_001.fastq.gz RNA-Seq 96.3 MB
A12_S10_L001_R1_001.fastq.gz RNA-Seq 96.3 MB
A12_S10_L001_R1_001.fastq.gz RNA-Seq 96.3 MB
A3_S1_L001_R1_001.fastq.gz RNA-Seq 83.2 MB
A3_S1_L001_R1_001.fastq.gz RNA-Seq 83.2 MB
A3_S1_L001_R1_001.fastq.gz RNA-Seq 83.2 MB
A3_S1_L001_R1_001.fastq.gz RNA-Seq 83.2 MB
A4_S2_L001_R1_001.fastq.gz RNA-Seq 68.2 MB
A4_S2_L001_R1_001.fastq.gz RNA-Seq 68.2 MB
A4_S2_L001_R1_001.fastq.gz RNA-Seq 68.2 MB
A4_S2_L001_R1_001.fastq.gz RNA-Seq 68.2 MB
A5_S3_L001_R1_001.fastq.gz RNA-Seq 79.7 MB
A5_S3_L001_R1_001.fastq.gz RNA-Seq 79.7 MB
A5_S3_L001_R1_001.fastq.gz RNA-Seq 79.7 MB
A5_S3_L001_R1_001.fastq.gz RNA-Seq 79.7 MB
A6_S4_L001_R1_001.fastq.gz RNA-Seq 79.9 MB
A6_S4_L001_R1_001.fastq.gz RNA-Seq 79.9 MB
A6_S4_L001_R1_001.fastq.gz RNA-Seq 79.9 MB
A6_S4_L001_R1_001.fastq.gz RNA-Seq 79.9 MB
A7_S5_L001_R1_001.fastq.gz RNA-Seq 75.8 MB
A7_S5_L001_R1_001.fastq.gz RNA-Seq 75.8 MB
A7_S5_L001_R1_001.fastq.gz RNA-Seq 75.8 MB
A7_S5_L001_R1_001.fastq.gz RNA-Seq 75.8 MB
A8_S6_L001_R1_001.fastq.gz RNA-Seq 75.5 MB
A8_S6_L001_R1_001.fastq.gz RNA-Seq 75.5 MB
A8_S6_L001_R1_001.fastq.gz RNA-Seq 75.5 MB
A8_S6_L001_R1_001.fastq.gz RNA-Seq 75.5 MB
A9_S7_L001_R1_001.fastq.gz RNA-Seq 83.8 MB
A9_S7_L001_R1_001.fastq.gz RNA-Seq 83.8 MB
A9_S7_L001_R1_001.fastq.gz RNA-Seq 83.8 MB
A9_S7_L001_R1_001.fastq.gz RNA-Seq 83.8 MB
B10_S20_L001_R1_001.fastq.gz RNA-Seq 83.5 MB
B10_S20_L001_R1_001.fastq.gz RNA-Seq 83.5 MB
B10_S20_L001_R1_001.fastq.gz RNA-Seq 83.5 MB
B10_S20_L001_R1_001.fastq.gz RNA-Seq 83.5 MB
B11_S21_L001_R1_001.fastq.gz RNA-Seq 94.7 MB
B11_S21_L001_R1_001.fastq.gz RNA-Seq 94.7 MB
B11_S21_L001_R1_001.fastq.gz RNA-Seq 94.7 MB
B11_S21_L001_R1_001.fastq.gz RNA-Seq 94.7 MB
B12_S22_L001_R1_001.fastq.gz RNA-Seq 125.3 MB
B12_S22_L001_R1_001.fastq.gz RNA-Seq 125.3 MB
B12_S22_L001_R1_001.fastq.gz RNA-Seq 125.3 MB
B12_S22_L001_R1_001.fastq.gz RNA-Seq 125.3 MB
B1_S11_L001_R1_001.fastq.gz RNA-Seq 94.4 MB
B1_S11_L001_R1_001.fastq.gz RNA-Seq 94.4 MB
B1_S11_L001_R1_001.fastq.gz RNA-Seq 94.4 MB
B1_S11_L001_R1_001.fastq.gz RNA-Seq 94.4 MB
B2_S12_L001_R1_001.fastq.gz RNA-Seq 76.3 MB
B2_S12_L001_R1_001.fastq.gz RNA-Seq 76.3 MB
B2_S12_L001_R1_001.fastq.gz RNA-Seq 76.3 MB
B2_S12_L001_R1_001.fastq.gz RNA-Seq 76.3 MB
B3_S13_L001_R1_001.fastq.gz RNA-Seq 70.7 MB
B3_S13_L001_R1_001.fastq.gz RNA-Seq 70.7 MB
B3_S13_L001_R1_001.fastq.gz RNA-Seq 70.7 MB
B3_S13_L001_R1_001.fastq.gz RNA-Seq 70.7 MB
B4_S14_L001_R1_001.fastq.gz RNA-Seq 81.2 MB
B4_S14_L001_R1_001.fastq.gz RNA-Seq 81.2 MB
B4_S14_L001_R1_001.fastq.gz RNA-Seq 81.2 MB
B4_S14_L001_R1_001.fastq.gz RNA-Seq 81.2 MB
B5_S15_L001_R1_001.fastq.gz RNA-Seq 41.7 MB
B5_S15_L001_R1_001.fastq.gz RNA-Seq 41.7 MB
B5_S15_L001_R1_001.fastq.gz RNA-Seq 41.7 MB
B5_S15_L001_R1_001.fastq.gz RNA-Seq 41.7 MB
B6_S16_L001_R1_001.fastq.gz RNA-Seq 44.8 MB
B6_S16_L001_R1_001.fastq.gz RNA-Seq 44.8 MB
B6_S16_L001_R1_001.fastq.gz RNA-Seq 44.8 MB
B6_S16_L001_R1_001.fastq.gz RNA-Seq 44.8 MB
B7_S17_L001_R1_001.fastq.gz RNA-Seq 76.3 MB
B7_S17_L001_R1_001.fastq.gz RNA-Seq 76.3 MB
B7_S17_L001_R1_001.fastq.gz RNA-Seq 76.3 MB
B7_S17_L001_R1_001.fastq.gz RNA-Seq 76.3 MB
B8_S18_L001_R1_001.fastq.gz RNA-Seq 78.7 MB
B8_S18_L001_R1_001.fastq.gz RNA-Seq 78.7 MB
B8_S18_L001_R1_001.fastq.gz RNA-Seq 78.7 MB
B8_S18_L001_R1_001.fastq.gz RNA-Seq 78.7 MB
B9_S19_L001_R1_001.fastq.gz RNA-Seq 86.7 MB
B9_S19_L001_R1_001.fastq.gz RNA-Seq 86.7 MB
B9_S19_L001_R1_001.fastq.gz RNA-Seq 86.7 MB
B9_S19_L001_R1_001.fastq.gz RNA-Seq 86.7 MB
C10_S8_L001_R1_001.fastq.gz RNA-Seq 321.2 MB
C10_S8_L001_R1_001.fastq.gz RNA-Seq 321.2 MB
C10_S8_L001_R1_001.fastq.gz RNA-Seq 321.2 MB
C10_S8_L001_R1_001.fastq.gz RNA-Seq 321.2 MB
C11_S9_L001_R1_001.fastq.gz RNA-Seq 304.0 MB
C11_S9_L001_R1_001.fastq.gz RNA-Seq 304.0 MB
C11_S9_L001_R1_001.fastq.gz RNA-Seq 304.0 MB
C11_S9_L001_R1_001.fastq.gz RNA-Seq 304.0 MB
C12_S10_L001_R1_001.fastq.gz RNA-Seq 696.3 KB
C12_S10_L001_R1_001.fastq.gz RNA-Seq 696.3 KB
C12_S10_L001_R1_001.fastq.gz RNA-Seq 696.3 KB
C12_S10_L001_R1_001.fastq.gz RNA-Seq 696.3 KB
C1_S23_L001_R1_001.fastq.gz RNA-Seq 107.5 MB
C1_S23_L001_R1_001.fastq.gz RNA-Seq 107.5 MB
C1_S23_L001_R1_001.fastq.gz RNA-Seq 107.5 MB
C1_S23_L001_R1_001.fastq.gz RNA-Seq 107.5 MB
C2_S24_L001_R1_001.fastq.gz RNA-Seq 123.1 MB
C2_S24_L001_R1_001.fastq.gz RNA-Seq 123.1 MB
C2_S24_L001_R1_001.fastq.gz RNA-Seq 123.1 MB
C2_S24_L001_R1_001.fastq.gz RNA-Seq 123.1 MB
C3_S1_L001_R1_001.fastq.gz RNA-Seq 291.9 MB
C3_S1_L001_R1_001.fastq.gz RNA-Seq 291.9 MB
C3_S1_L001_R1_001.fastq.gz RNA-Seq 291.9 MB
C3_S1_L001_R1_001.fastq.gz RNA-Seq 291.9 MB
C4_S2_L001_R1_001.fastq.gz RNA-Seq 367.6 MB
C4_S2_L001_R1_001.fastq.gz RNA-Seq 367.6 MB
C4_S2_L001_R1_001.fastq.gz RNA-Seq 367.6 MB
C4_S2_L001_R1_001.fastq.gz RNA-Seq 367.6 MB
C5_S3_L001_R1_001.fastq.gz RNA-Seq 301.4 MB
C5_S3_L001_R1_001.fastq.gz RNA-Seq 301.4 MB
C5_S3_L001_R1_001.fastq.gz RNA-Seq 301.4 MB
C5_S3_L001_R1_001.fastq.gz RNA-Seq 301.4 MB
C6_S4_L001_R1_001.fastq.gz RNA-Seq 289.3 MB
C6_S4_L001_R1_001.fastq.gz RNA-Seq 289.3 MB
C6_S4_L001_R1_001.fastq.gz RNA-Seq 289.3 MB
C6_S4_L001_R1_001.fastq.gz RNA-Seq 289.3 MB
C7_S5_L001_R1_001.fastq.gz RNA-Seq 292.9 MB
C7_S5_L001_R1_001.fastq.gz RNA-Seq 292.9 MB
C7_S5_L001_R1_001.fastq.gz RNA-Seq 292.9 MB
C7_S5_L001_R1_001.fastq.gz RNA-Seq 292.9 MB
C8_S6_L001_R1_001.fastq.gz RNA-Seq 295.3 MB
C8_S6_L001_R1_001.fastq.gz RNA-Seq 295.3 MB
C8_S6_L001_R1_001.fastq.gz RNA-Seq 295.3 MB
C8_S6_L001_R1_001.fastq.gz RNA-Seq 295.3 MB
C9_S7_L001_R1_001.fastq.gz RNA-Seq 283.4 MB
C9_S7_L001_R1_001.fastq.gz RNA-Seq 283.4 MB
C9_S7_L001_R1_001.fastq.gz RNA-Seq 283.4 MB
C9_S7_L001_R1_001.fastq.gz RNA-Seq 283.4 MB
D10_S18_L001_R1_001.fastq.gz RNA-Seq 273.6 MB
D10_S18_L001_R1_001.fastq.gz RNA-Seq 273.6 MB
D10_S18_L001_R1_001.fastq.gz RNA-Seq 273.6 MB
D10_S18_L001_R1_001.fastq.gz RNA-Seq 273.6 MB
D11_S19_L001_R1_001.fastq.gz RNA-Seq 124.6 MB
D11_S19_L001_R1_001.fastq.gz RNA-Seq 124.6 MB
D11_S19_L001_R1_001.fastq.gz RNA-Seq 124.6 MB
D11_S19_L001_R1_001.fastq.gz RNA-Seq 124.6 MB
D12_S20_L001_R1_001.fastq.gz RNA-Seq 406.1 MB
D12_S20_L001_R1_001.fastq.gz RNA-Seq 406.1 MB
D12_S20_L001_R1_001.fastq.gz RNA-Seq 406.1 MB
D12_S20_L001_R1_001.fastq.gz RNA-Seq 406.1 MB
D1_S11_L001_R1_001.fastq.gz RNA-Seq 253.5 MB
D1_S11_L001_R1_001.fastq.gz RNA-Seq 253.5 MB
D1_S11_L001_R1_001.fastq.gz RNA-Seq 253.5 MB
D1_S11_L001_R1_001.fastq.gz RNA-Seq 253.5 MB
D2_S12_L001_R1_001.fastq.gz RNA-Seq 270.0 MB
D2_S12_L001_R1_001.fastq.gz RNA-Seq 270.0 MB
D2_S12_L001_R1_001.fastq.gz RNA-Seq 270.0 MB
D2_S12_L001_R1_001.fastq.gz RNA-Seq 270.0 MB
D3_S13_L001_R1_001.fastq.gz RNA-Seq 243.5 MB
D3_S13_L001_R1_001.fastq.gz RNA-Seq 243.5 MB
D3_S13_L001_R1_001.fastq.gz RNA-Seq 243.5 MB
D3_S13_L001_R1_001.fastq.gz RNA-Seq 243.5 MB
D4_S14_L001_R1_001.fastq.gz RNA-Seq 314.6 MB
D4_S14_L001_R1_001.fastq.gz RNA-Seq 314.6 MB
D4_S14_L001_R1_001.fastq.gz RNA-Seq 314.6 MB
D4_S14_L001_R1_001.fastq.gz RNA-Seq 314.6 MB
D5_S15_L001_R1_001.fastq.gz RNA-Seq 269.5 MB
D5_S15_L001_R1_001.fastq.gz RNA-Seq 269.5 MB
D5_S15_L001_R1_001.fastq.gz RNA-Seq 269.5 MB
D5_S15_L001_R1_001.fastq.gz RNA-Seq 269.5 MB
D8_S16_L001_R1_001.fastq.gz RNA-Seq 280.6 MB
D8_S16_L001_R1_001.fastq.gz RNA-Seq 280.6 MB
D8_S16_L001_R1_001.fastq.gz RNA-Seq 280.6 MB
D8_S16_L001_R1_001.fastq.gz RNA-Seq 280.6 MB
D9_S17_L001_R1_001.fastq.gz RNA-Seq 235.0 MB
D9_S17_L001_R1_001.fastq.gz RNA-Seq 235.0 MB
D9_S17_L001_R1_001.fastq.gz RNA-Seq 235.0 MB
D9_S17_L001_R1_001.fastq.gz RNA-Seq 235.0 MB
H1_S21_L001_R1_001.fastq.gz RNA-Seq 300.6 MB
H1_S21_L001_R1_001.fastq.gz RNA-Seq 300.6 MB
H1_S21_L001_R1_001.fastq.gz RNA-Seq 300.6 MB
H1_S21_L001_R1_001.fastq.gz RNA-Seq 300.6 MB
H2_S22_L001_R1_001.fastq.gz RNA-Seq 118.0 MB
H2_S22_L001_R1_001.fastq.gz RNA-Seq 118.0 MB
H2_S22_L001_R1_001.fastq.gz RNA-Seq 118.0 MB
H2_S22_L001_R1_001.fastq.gz RNA-Seq 118.0 MB
GSE232514 GSE via ncbi_elink
GEO

Expanded repertoire of RNA-editing-based detection for RNA binding protein interactions (2)

Homo sapiens
120 data files
FileTypeSize
A1_S1_L001_R1_001.fastq.gz RNA-Seq 1.3 GB
A1_S1_L001_R1_001.fastq.gz RNA-Seq 1.3 GB
A1_S1_L001_R1_001.fastq.gz RNA-Seq 1.3 GB
A1_S1_L001_R1_001.fastq.gz RNA-Seq 1.3 GB
A2_S4_L001_R1_001.fastq.gz RNA-Seq 1.1 GB
A2_S4_L001_R1_001.fastq.gz RNA-Seq 1.1 GB
A2_S4_L001_R1_001.fastq.gz RNA-Seq 1.1 GB
A2_S4_L001_R1_001.fastq.gz RNA-Seq 1.1 GB
A3_S8_L001_R1_001.fastq.gz RNA-Seq 1.6 GB
A3_S8_L001_R1_001.fastq.gz RNA-Seq 1.6 GB
A3_S8_L001_R1_001.fastq.gz RNA-Seq 1.6 GB
A3_S8_L001_R1_001.fastq.gz RNA-Seq 1.6 GB
A4_S1_L001_R1_001.fastq.gz RNA-Seq 1.7 GB
A4_S1_L001_R1_001.fastq.gz RNA-Seq 1.7 GB
A4_S1_L001_R1_001.fastq.gz RNA-Seq 1.7 GB
A4_S1_L001_R1_001.fastq.gz RNA-Seq 1.7 GB
B1_S2_L001_R1_001.fastq.gz RNA-Seq 1.4 GB
B1_S2_L001_R1_001.fastq.gz RNA-Seq 1.4 GB
B1_S2_L001_R1_001.fastq.gz RNA-Seq 1.4 GB
B1_S2_L001_R1_001.fastq.gz RNA-Seq 1.4 GB
B2_S6_L001_R1_001.fastq.gz RNA-Seq 1.6 GB
B2_S6_L001_R1_001.fastq.gz RNA-Seq 1.6 GB
B2_S6_L001_R1_001.fastq.gz RNA-Seq 1.6 GB
B2_S6_L001_R1_001.fastq.gz RNA-Seq 1.6 GB
B3_S9_L001_R1_001.fastq.gz RNA-Seq 1.9 GB
B3_S9_L001_R1_001.fastq.gz RNA-Seq 1.9 GB
B3_S9_L001_R1_001.fastq.gz RNA-Seq 1.9 GB
B3_S9_L001_R1_001.fastq.gz RNA-Seq 1.9 GB
B4_S2_L001_R1_001.fastq.gz RNA-Seq 1.2 GB
B4_S2_L001_R1_001.fastq.gz RNA-Seq 1.2 GB
B4_S2_L001_R1_001.fastq.gz RNA-Seq 1.2 GB
B4_S2_L001_R1_001.fastq.gz RNA-Seq 1.2 GB
B5_S5_L001_R1_001.fastq.gz RNA-Seq 1.1 GB
B5_S5_L001_R1_001.fastq.gz RNA-Seq 1.1 GB
B5_S5_L001_R1_001.fastq.gz RNA-Seq 1.1 GB
B5_S5_L001_R1_001.fastq.gz RNA-Seq 1.1 GB
B6_S19_L002_R1_001.fastq.gz RNA-Seq 1.7 GB
B6_S19_L002_R1_001.fastq.gz RNA-Seq 1.7 GB
B6_S19_L002_R1_001.fastq.gz RNA-Seq 1.7 GB
B6_S19_L002_R1_001.fastq.gz RNA-Seq 1.7 GB
B7_S12_L002_R1_001.fastq.gz RNA-Seq 1.5 GB
B7_S12_L002_R1_001.fastq.gz RNA-Seq 1.5 GB
B7_S12_L002_R1_001.fastq.gz RNA-Seq 1.5 GB
B7_S12_L002_R1_001.fastq.gz RNA-Seq 1.5 GB
B8_S15_L002_R1_001.fastq.gz RNA-Seq 1.6 GB
B8_S15_L002_R1_001.fastq.gz RNA-Seq 1.6 GB
B8_S15_L002_R1_001.fastq.gz RNA-Seq 1.6 GB
B8_S15_L002_R1_001.fastq.gz RNA-Seq 1.6 GB
C1_S3_L001_R1_001.fastq.gz RNA-Seq 1.2 GB
C1_S3_L001_R1_001.fastq.gz RNA-Seq 1.2 GB
C1_S3_L001_R1_001.fastq.gz RNA-Seq 1.2 GB
C1_S3_L001_R1_001.fastq.gz RNA-Seq 1.2 GB
C2_S7_L001_R1_001.fastq.gz RNA-Seq 1.4 GB
C2_S7_L001_R1_001.fastq.gz RNA-Seq 1.4 GB
C2_S7_L001_R1_001.fastq.gz RNA-Seq 1.4 GB
C2_S7_L001_R1_001.fastq.gz RNA-Seq 1.4 GB
C3_S10_L001_R1_001.fastq.gz RNA-Seq 1.8 GB
C3_S10_L001_R1_001.fastq.gz RNA-Seq 1.8 GB
C3_S10_L001_R1_001.fastq.gz RNA-Seq 1.8 GB
C3_S10_L001_R1_001.fastq.gz RNA-Seq 1.8 GB
C4_S13_L002_R1_001.fastq.gz RNA-Seq 1.4 GB
C4_S13_L002_R1_001.fastq.gz RNA-Seq 1.4 GB
C4_S13_L002_R1_001.fastq.gz RNA-Seq 1.4 GB
C4_S13_L002_R1_001.fastq.gz RNA-Seq 1.4 GB
HM-OT-10_S10_L001_R1_001.fastq.gz RNA-Seq 813.2 MB
HM-OT-10_S10_L001_R1_001.fastq.gz RNA-Seq 813.2 MB
HM-OT-10_S10_L001_R1_001.fastq.gz RNA-Seq 813.2 MB
HM-OT-10_S10_L001_R1_001.fastq.gz RNA-Seq 813.2 MB
HM-OT-11_S11_L001_R1_001.fastq.gz RNA-Seq 508.4 MB
HM-OT-11_S11_L001_R1_001.fastq.gz RNA-Seq 508.4 MB
HM-OT-11_S11_L001_R1_001.fastq.gz RNA-Seq 508.4 MB
HM-OT-11_S11_L001_R1_001.fastq.gz RNA-Seq 508.4 MB
HM-OT-12_S12_L001_R1_001.fastq.gz RNA-Seq 563.3 MB
HM-OT-12_S12_L001_R1_001.fastq.gz RNA-Seq 563.3 MB
HM-OT-12_S12_L001_R1_001.fastq.gz RNA-Seq 563.3 MB
HM-OT-12_S12_L001_R1_001.fastq.gz RNA-Seq 563.3 MB
HM-OT-13_S13_L001_R1_001.fastq.gz RNA-Seq 724.0 MB
HM-OT-13_S13_L001_R1_001.fastq.gz RNA-Seq 724.0 MB
HM-OT-13_S13_L001_R1_001.fastq.gz RNA-Seq 724.0 MB
HM-OT-13_S13_L001_R1_001.fastq.gz RNA-Seq 724.0 MB
HM-OT-14_S14_L001_R1_001.fastq.gz RNA-Seq 568.2 MB
HM-OT-14_S14_L001_R1_001.fastq.gz RNA-Seq 568.2 MB
HM-OT-14_S14_L001_R1_001.fastq.gz RNA-Seq 568.2 MB
HM-OT-14_S14_L001_R1_001.fastq.gz RNA-Seq 568.2 MB
HM-OT-1_S1_L001_R1_001.fastq.gz RNA-Seq 746.6 MB
HM-OT-1_S1_L001_R1_001.fastq.gz RNA-Seq 746.6 MB
HM-OT-1_S1_L001_R1_001.fastq.gz RNA-Seq 746.6 MB
HM-OT-1_S1_L001_R1_001.fastq.gz RNA-Seq 746.6 MB
HM-OT-2_S2_L001_R1_001.fastq.gz RNA-Seq 567.3 MB
HM-OT-2_S2_L001_R1_001.fastq.gz RNA-Seq 567.3 MB
HM-OT-2_S2_L001_R1_001.fastq.gz RNA-Seq 567.3 MB
HM-OT-2_S2_L001_R1_001.fastq.gz RNA-Seq 567.3 MB
HM-OT-3_S3_L001_R1_001.fastq.gz RNA-Seq 450.6 MB
HM-OT-3_S3_L001_R1_001.fastq.gz RNA-Seq 450.6 MB
HM-OT-3_S3_L001_R1_001.fastq.gz RNA-Seq 450.6 MB
HM-OT-3_S3_L001_R1_001.fastq.gz RNA-Seq 450.6 MB
HM-OT-4_S4_L001_R1_001.fastq.gz RNA-Seq 596.1 MB
HM-OT-4_S4_L001_R1_001.fastq.gz RNA-Seq 596.1 MB
HM-OT-4_S4_L001_R1_001.fastq.gz RNA-Seq 596.1 MB
HM-OT-4_S4_L001_R1_001.fastq.gz RNA-Seq 596.1 MB
HM-OT-5_S5_L001_R1_001.fastq.gz RNA-Seq 663.2 MB
HM-OT-5_S5_L001_R1_001.fastq.gz RNA-Seq 663.2 MB
HM-OT-5_S5_L001_R1_001.fastq.gz RNA-Seq 663.2 MB
HM-OT-5_S5_L001_R1_001.fastq.gz RNA-Seq 663.2 MB
HM-OT-6_S6_L001_R1_001.fastq.gz RNA-Seq 681.5 MB
HM-OT-6_S6_L001_R1_001.fastq.gz RNA-Seq 681.5 MB
HM-OT-6_S6_L001_R1_001.fastq.gz RNA-Seq 681.5 MB
HM-OT-6_S6_L001_R1_001.fastq.gz RNA-Seq 681.5 MB
HM-OT-7_S7_L001_R1_001.fastq.gz RNA-Seq 632.3 MB
HM-OT-7_S7_L001_R1_001.fastq.gz RNA-Seq 632.3 MB
HM-OT-7_S7_L001_R1_001.fastq.gz RNA-Seq 632.3 MB
HM-OT-7_S7_L001_R1_001.fastq.gz RNA-Seq 632.3 MB
HM-OT-8_S8_L001_R1_001.fastq.gz RNA-Seq 544.0 MB
HM-OT-8_S8_L001_R1_001.fastq.gz RNA-Seq 544.0 MB
HM-OT-8_S8_L001_R1_001.fastq.gz RNA-Seq 544.0 MB
HM-OT-8_S8_L001_R1_001.fastq.gz RNA-Seq 544.0 MB
HM-OT-9_S9_L001_R1_001.fastq.gz RNA-Seq 715.2 MB
HM-OT-9_S9_L001_R1_001.fastq.gz RNA-Seq 715.2 MB
HM-OT-9_S9_L001_R1_001.fastq.gz RNA-Seq 715.2 MB
HM-OT-9_S9_L001_R1_001.fastq.gz RNA-Seq 715.2 MB
GSE232518 GSE via ncbi_elink
GEO

Expanded repertoire of RNA-editing-based detection for RNA binding protein interactions (4)

Homo sapiens
96 data files
FileTypeSize
Torin_RS_01_S1_L004_R1_001.fastq.gz RNA-Seq 2.0 GB
Torin_RS_01_S1_L004_R1_001.fastq.gz RNA-Seq 2.0 GB
Torin_RS_01_S1_L004_R1_001.fastq.gz RNA-Seq 2.0 GB
Torin_RS_01_S1_L004_R1_001.fastq.gz RNA-Seq 2.0 GB
Torin_RS_02_S2_L004_R1_001.fastq.gz RNA-Seq 4.8 GB
Torin_RS_02_S2_L004_R1_001.fastq.gz RNA-Seq 4.8 GB
Torin_RS_02_S2_L004_R1_001.fastq.gz RNA-Seq 4.8 GB
Torin_RS_02_S2_L004_R1_001.fastq.gz RNA-Seq 4.8 GB
Torin_RS_03_S3_L004_R1_001.fastq.gz RNA-Seq 3.4 GB
Torin_RS_03_S3_L004_R1_001.fastq.gz RNA-Seq 3.4 GB
Torin_RS_03_S3_L004_R1_001.fastq.gz RNA-Seq 3.4 GB
Torin_RS_03_S3_L004_R1_001.fastq.gz RNA-Seq 3.4 GB
Torin_RS_04_S4_L004_R1_001.fastq.gz RNA-Seq 4.2 GB
Torin_RS_04_S4_L004_R1_001.fastq.gz RNA-Seq 4.2 GB
Torin_RS_04_S4_L004_R1_001.fastq.gz RNA-Seq 4.2 GB
Torin_RS_04_S4_L004_R1_001.fastq.gz RNA-Seq 4.2 GB
Torin_RS_05_S5_L004_R1_001.fastq.gz RNA-Seq 3.9 GB
Torin_RS_05_S5_L004_R1_001.fastq.gz RNA-Seq 3.9 GB
Torin_RS_05_S5_L004_R1_001.fastq.gz RNA-Seq 3.9 GB
Torin_RS_05_S5_L004_R1_001.fastq.gz RNA-Seq 3.9 GB
Torin_RS_06_S6_L004_R1_001.fastq.gz RNA-Seq 2.9 GB
Torin_RS_06_S6_L004_R1_001.fastq.gz RNA-Seq 2.9 GB
Torin_RS_06_S6_L004_R1_001.fastq.gz RNA-Seq 2.9 GB
Torin_RS_06_S6_L004_R1_001.fastq.gz RNA-Seq 2.9 GB
Torin_RS_07_S7_L004_R1_001.fastq.gz RNA-Seq 4.3 GB
Torin_RS_07_S7_L004_R1_001.fastq.gz RNA-Seq 4.3 GB
Torin_RS_07_S7_L004_R1_001.fastq.gz RNA-Seq 4.3 GB
Torin_RS_07_S7_L004_R1_001.fastq.gz RNA-Seq 4.3 GB
Torin_RS_08_S8_L004_R1_001.fastq.gz RNA-Seq 3.4 GB
Torin_RS_08_S8_L004_R1_001.fastq.gz RNA-Seq 3.4 GB
Torin_RS_08_S8_L004_R1_001.fastq.gz RNA-Seq 3.4 GB
Torin_RS_08_S8_L004_R1_001.fastq.gz RNA-Seq 3.4 GB
Torin_RS_09_S9_L004_R1_001.fastq.gz RNA-Seq 2.9 GB
Torin_RS_09_S9_L004_R1_001.fastq.gz RNA-Seq 2.9 GB
Torin_RS_09_S9_L004_R1_001.fastq.gz RNA-Seq 2.9 GB
Torin_RS_09_S9_L004_R1_001.fastq.gz RNA-Seq 2.9 GB
Torin_RS_10_S10_L004_R1_001.fastq.gz RNA-Seq 4.2 GB
Torin_RS_10_S10_L004_R1_001.fastq.gz RNA-Seq 4.2 GB
Torin_RS_10_S10_L004_R1_001.fastq.gz RNA-Seq 4.2 GB
Torin_RS_10_S10_L004_R1_001.fastq.gz RNA-Seq 4.2 GB
Torin_RS_11_S11_L004_R1_001.fastq.gz RNA-Seq 3.1 GB
Torin_RS_11_S11_L004_R1_001.fastq.gz RNA-Seq 3.1 GB
Torin_RS_11_S11_L004_R1_001.fastq.gz RNA-Seq 3.1 GB
Torin_RS_11_S11_L004_R1_001.fastq.gz RNA-Seq 3.1 GB
Torin_RS_12_S12_L004_R1_001.fastq.gz RNA-Seq 4.5 GB
Torin_RS_12_S12_L004_R1_001.fastq.gz RNA-Seq 4.5 GB
Torin_RS_12_S12_L004_R1_001.fastq.gz RNA-Seq 4.5 GB
Torin_RS_12_S12_L004_R1_001.fastq.gz RNA-Seq 4.5 GB
Torin_RS_13_S13_L004_R1_001.fastq.gz RNA-Seq 3.0 GB
Torin_RS_13_S13_L004_R1_001.fastq.gz RNA-Seq 3.0 GB
Torin_RS_13_S13_L004_R1_001.fastq.gz RNA-Seq 3.0 GB
Torin_RS_13_S13_L004_R1_001.fastq.gz RNA-Seq 3.0 GB
Torin_RS_14_S14_L004_R1_001.fastq.gz RNA-Seq 3.6 GB
Torin_RS_14_S14_L004_R1_001.fastq.gz RNA-Seq 3.6 GB
Torin_RS_14_S14_L004_R1_001.fastq.gz RNA-Seq 3.6 GB
Torin_RS_14_S14_L004_R1_001.fastq.gz RNA-Seq 3.6 GB
Torin_RS_15_S15_L004_R1_001.fastq.gz RNA-Seq 6.1 GB
Torin_RS_15_S15_L004_R1_001.fastq.gz RNA-Seq 6.1 GB
Torin_RS_15_S15_L004_R1_001.fastq.gz RNA-Seq 6.1 GB
Torin_RS_15_S15_L004_R1_001.fastq.gz RNA-Seq 6.1 GB
Torin_RS_16_S16_L004_R1_001.fastq.gz RNA-Seq 3.2 GB
Torin_RS_16_S16_L004_R1_001.fastq.gz RNA-Seq 3.2 GB
Torin_RS_16_S16_L004_R1_001.fastq.gz RNA-Seq 3.2 GB
Torin_RS_16_S16_L004_R1_001.fastq.gz RNA-Seq 3.2 GB
Torin_RS_17_S17_L004_R1_001.fastq.gz RNA-Seq 3.2 GB
Torin_RS_17_S17_L004_R1_001.fastq.gz RNA-Seq 3.2 GB
Torin_RS_17_S17_L004_R1_001.fastq.gz RNA-Seq 3.2 GB
Torin_RS_17_S17_L004_R1_001.fastq.gz RNA-Seq 3.2 GB
Torin_RS_18_S18_L004_R1_001.fastq.gz RNA-Seq 6.5 GB
Torin_RS_18_S18_L004_R1_001.fastq.gz RNA-Seq 6.5 GB
Torin_RS_18_S18_L004_R1_001.fastq.gz RNA-Seq 6.5 GB
Torin_RS_18_S18_L004_R1_001.fastq.gz RNA-Seq 6.5 GB
Torin_RS_19_S19_L004_R1_001.fastq.gz RNA-Seq 6.1 GB
Torin_RS_19_S19_L004_R1_001.fastq.gz RNA-Seq 6.1 GB
Torin_RS_19_S19_L004_R1_001.fastq.gz RNA-Seq 6.1 GB
Torin_RS_19_S19_L004_R1_001.fastq.gz RNA-Seq 6.1 GB
Torin_RS_20_S20_L004_R1_001.fastq.gz RNA-Seq 5.1 GB
Torin_RS_20_S20_L004_R1_001.fastq.gz RNA-Seq 5.1 GB
Torin_RS_20_S20_L004_R1_001.fastq.gz RNA-Seq 5.1 GB
Torin_RS_20_S20_L004_R1_001.fastq.gz RNA-Seq 5.1 GB
Torin_RS_21_S21_L004_R1_001.fastq.gz RNA-Seq 3.6 GB
Torin_RS_21_S21_L004_R1_001.fastq.gz RNA-Seq 3.6 GB
Torin_RS_21_S21_L004_R1_001.fastq.gz RNA-Seq 3.6 GB
Torin_RS_21_S21_L004_R1_001.fastq.gz RNA-Seq 3.6 GB
Torin_RS_22_S22_L004_R1_001.fastq.gz RNA-Seq 6.7 GB
Torin_RS_22_S22_L004_R1_001.fastq.gz RNA-Seq 6.7 GB
Torin_RS_22_S22_L004_R1_001.fastq.gz RNA-Seq 6.7 GB
Torin_RS_22_S22_L004_R1_001.fastq.gz RNA-Seq 6.7 GB
Torin_RS_23_S23_L004_R1_001.fastq.gz RNA-Seq 3.2 GB
Torin_RS_23_S23_L004_R1_001.fastq.gz RNA-Seq 3.2 GB
Torin_RS_23_S23_L004_R1_001.fastq.gz RNA-Seq 3.2 GB
Torin_RS_23_S23_L004_R1_001.fastq.gz RNA-Seq 3.2 GB
Torin_RS_24_S24_L004_R1_001.fastq.gz RNA-Seq 1.8 GB
Torin_RS_24_S24_L004_R1_001.fastq.gz RNA-Seq 1.8 GB
Torin_RS_24_S24_L004_R1_001.fastq.gz RNA-Seq 1.8 GB
Torin_RS_24_S24_L004_R1_001.fastq.gz RNA-Seq 1.8 GB
GSE232519 GSE via ncbi_elink
GEO

Expanded repertoire of RNA-editing-based detection for RNA binding protein interactions (5)

Homo sapiens
144 data files
FileTypeSize
10_S10_L001_R1_001.fastq.gz RNA-Seq 15.7 MB
10_S10_L001_R1_001.fastq.gz RNA-Seq 15.7 MB
10_S10_L001_R1_001.fastq.gz RNA-Seq 15.7 MB
10_S10_L001_R1_001.fastq.gz RNA-Seq 15.7 MB
11_S11_L001_R1_001.fastq.gz RNA-Seq 9.7 MB
11_S11_L001_R1_001.fastq.gz RNA-Seq 9.7 MB
11_S11_L001_R1_001.fastq.gz RNA-Seq 9.7 MB
11_S11_L001_R1_001.fastq.gz RNA-Seq 9.7 MB
12_S12_L001_R1_001.fastq.gz RNA-Seq 12.0 MB
12_S12_L001_R1_001.fastq.gz RNA-Seq 12.0 MB
12_S12_L001_R1_001.fastq.gz RNA-Seq 12.0 MB
12_S12_L001_R1_001.fastq.gz RNA-Seq 12.0 MB
13_S13_L001_R1_001.fastq.gz RNA-Seq 15.1 MB
13_S13_L001_R1_001.fastq.gz RNA-Seq 15.1 MB
13_S13_L001_R1_001.fastq.gz RNA-Seq 15.1 MB
13_S13_L001_R1_001.fastq.gz RNA-Seq 15.1 MB
14_S14_L001_R1_001.fastq.gz RNA-Seq 12.2 MB
14_S14_L001_R1_001.fastq.gz RNA-Seq 12.2 MB
14_S14_L001_R1_001.fastq.gz RNA-Seq 12.2 MB
14_S14_L001_R1_001.fastq.gz RNA-Seq 12.2 MB
15_S15_L001_R1_001.fastq.gz RNA-Seq 12.8 MB
15_S15_L001_R1_001.fastq.gz RNA-Seq 12.8 MB
15_S15_L001_R1_001.fastq.gz RNA-Seq 12.8 MB
15_S15_L001_R1_001.fastq.gz RNA-Seq 12.8 MB
16_S16_L001_R1_001.fastq.gz RNA-Seq 13.9 MB
16_S16_L001_R1_001.fastq.gz RNA-Seq 13.9 MB
16_S16_L001_R1_001.fastq.gz RNA-Seq 13.9 MB
16_S16_L001_R1_001.fastq.gz RNA-Seq 13.9 MB
17_S17_L001_R1_001.fastq.gz RNA-Seq 12.4 MB
17_S17_L001_R1_001.fastq.gz RNA-Seq 12.4 MB
17_S17_L001_R1_001.fastq.gz RNA-Seq 12.4 MB
17_S17_L001_R1_001.fastq.gz RNA-Seq 12.4 MB
18_S18_L001_R1_001.fastq.gz RNA-Seq 9.8 MB
18_S18_L001_R1_001.fastq.gz RNA-Seq 9.8 MB
18_S18_L001_R1_001.fastq.gz RNA-Seq 9.8 MB
18_S18_L001_R1_001.fastq.gz RNA-Seq 9.8 MB
19_S19_L001_R1_001.fastq.gz RNA-Seq 14.2 MB
19_S19_L001_R1_001.fastq.gz RNA-Seq 14.2 MB
19_S19_L001_R1_001.fastq.gz RNA-Seq 14.2 MB
19_S19_L001_R1_001.fastq.gz RNA-Seq 14.2 MB
1_S1_L001_R1_001.fastq.gz RNA-Seq 15.8 MB
1_S1_L001_R1_001.fastq.gz RNA-Seq 15.8 MB
1_S1_L001_R1_001.fastq.gz RNA-Seq 15.8 MB
1_S1_L001_R1_001.fastq.gz RNA-Seq 15.8 MB
20_S20_L001_R1_001.fastq.gz RNA-Seq 14.9 MB
20_S20_L001_R1_001.fastq.gz RNA-Seq 14.9 MB
20_S20_L001_R1_001.fastq.gz RNA-Seq 14.9 MB
20_S20_L001_R1_001.fastq.gz RNA-Seq 14.9 MB
21_S21_L001_R1_001.fastq.gz RNA-Seq 8.8 MB
21_S21_L001_R1_001.fastq.gz RNA-Seq 8.8 MB
21_S21_L001_R1_001.fastq.gz RNA-Seq 8.8 MB
21_S21_L001_R1_001.fastq.gz RNA-Seq 8.8 MB
22_S22_L001_R1_001.fastq.gz RNA-Seq 7.9 MB
22_S22_L001_R1_001.fastq.gz RNA-Seq 7.9 MB
22_S22_L001_R1_001.fastq.gz RNA-Seq 7.9 MB
22_S22_L001_R1_001.fastq.gz RNA-Seq 7.9 MB
23_S23_L001_R1_001.fastq.gz RNA-Seq 11.1 MB
23_S23_L001_R1_001.fastq.gz RNA-Seq 11.1 MB
23_S23_L001_R1_001.fastq.gz RNA-Seq 11.1 MB
23_S23_L001_R1_001.fastq.gz RNA-Seq 11.1 MB
24_S24_L001_R1_001.fastq.gz RNA-Seq 9.7 MB
24_S24_L001_R1_001.fastq.gz RNA-Seq 9.7 MB
24_S24_L001_R1_001.fastq.gz RNA-Seq 9.7 MB
24_S24_L001_R1_001.fastq.gz RNA-Seq 9.7 MB
2_S2_L001_R1_001.fastq.gz RNA-Seq 15.8 MB
2_S2_L001_R1_001.fastq.gz RNA-Seq 15.8 MB
2_S2_L001_R1_001.fastq.gz RNA-Seq 15.8 MB
2_S2_L001_R1_001.fastq.gz RNA-Seq 15.8 MB
3_S3_L001_R1_001.fastq.gz RNA-Seq 13.6 MB
3_S3_L001_R1_001.fastq.gz RNA-Seq 13.6 MB
3_S3_L001_R1_001.fastq.gz RNA-Seq 13.6 MB
3_S3_L001_R1_001.fastq.gz RNA-Seq 13.6 MB
40_S40_L001_R1_001.fastq.gz RNA-Seq 19.7 MB
40_S40_L001_R1_001.fastq.gz RNA-Seq 19.7 MB
40_S40_L001_R1_001.fastq.gz RNA-Seq 19.7 MB
40_S40_L001_R1_001.fastq.gz RNA-Seq 19.7 MB
41_S41_L001_R1_001.fastq.gz RNA-Seq 18.2 MB
41_S41_L001_R1_001.fastq.gz RNA-Seq 18.2 MB
41_S41_L001_R1_001.fastq.gz RNA-Seq 18.2 MB
41_S41_L001_R1_001.fastq.gz RNA-Seq 18.2 MB
42_S42_L001_R1_001.fastq.gz RNA-Seq 17.6 MB
42_S42_L001_R1_001.fastq.gz RNA-Seq 17.6 MB
42_S42_L001_R1_001.fastq.gz RNA-Seq 17.6 MB
42_S42_L001_R1_001.fastq.gz RNA-Seq 17.6 MB
43_S43_L001_R1_001.fastq.gz RNA-Seq 18.9 MB
43_S43_L001_R1_001.fastq.gz RNA-Seq 18.9 MB
43_S43_L001_R1_001.fastq.gz RNA-Seq 18.9 MB
43_S43_L001_R1_001.fastq.gz RNA-Seq 18.9 MB
44_S44_L001_R1_001.fastq.gz RNA-Seq 17.4 MB
44_S44_L001_R1_001.fastq.gz RNA-Seq 17.4 MB
44_S44_L001_R1_001.fastq.gz RNA-Seq 17.4 MB
44_S44_L001_R1_001.fastq.gz RNA-Seq 17.4 MB
45_S45_L001_R1_001.fastq.gz RNA-Seq 17.6 MB
45_S45_L001_R1_001.fastq.gz RNA-Seq 17.6 MB
45_S45_L001_R1_001.fastq.gz RNA-Seq 17.6 MB
45_S45_L001_R1_001.fastq.gz RNA-Seq 17.6 MB
46_S46_L001_R1_001.fastq.gz RNA-Seq 17.4 MB
46_S46_L001_R1_001.fastq.gz RNA-Seq 17.4 MB
46_S46_L001_R1_001.fastq.gz RNA-Seq 17.4 MB
46_S46_L001_R1_001.fastq.gz RNA-Seq 17.4 MB
47_S47_L001_R1_001.fastq.gz RNA-Seq 21.0 MB
47_S47_L001_R1_001.fastq.gz RNA-Seq 21.0 MB
47_S47_L001_R1_001.fastq.gz RNA-Seq 21.0 MB
47_S47_L001_R1_001.fastq.gz RNA-Seq 21.0 MB
48_S48_L001_R1_001.fastq.gz RNA-Seq 19.4 MB
48_S48_L001_R1_001.fastq.gz RNA-Seq 19.4 MB
48_S48_L001_R1_001.fastq.gz RNA-Seq 19.4 MB
48_S48_L001_R1_001.fastq.gz RNA-Seq 19.4 MB
49_S49_L001_R1_001.fastq.gz RNA-Seq 17.6 MB
49_S49_L001_R1_001.fastq.gz RNA-Seq 17.6 MB
49_S49_L001_R1_001.fastq.gz RNA-Seq 17.6 MB
49_S49_L001_R1_001.fastq.gz RNA-Seq 17.6 MB
4_S4_L001_R1_001.fastq.gz RNA-Seq 18.2 MB
4_S4_L001_R1_001.fastq.gz RNA-Seq 18.2 MB
4_S4_L001_R1_001.fastq.gz RNA-Seq 18.2 MB
4_S4_L001_R1_001.fastq.gz RNA-Seq 18.2 MB
50_S50_L001_R1_001.fastq.gz RNA-Seq 18.4 MB
50_S50_L001_R1_001.fastq.gz RNA-Seq 18.4 MB
50_S50_L001_R1_001.fastq.gz RNA-Seq 18.4 MB
50_S50_L001_R1_001.fastq.gz RNA-Seq 18.4 MB
51_S51_L001_R1_001.fastq.gz RNA-Seq 19.7 MB
51_S51_L001_R1_001.fastq.gz RNA-Seq 19.7 MB
51_S51_L001_R1_001.fastq.gz RNA-Seq 19.7 MB
51_S51_L001_R1_001.fastq.gz RNA-Seq 19.7 MB
5_S5_L001_R1_001.fastq.gz RNA-Seq 10.9 MB
5_S5_L001_R1_001.fastq.gz RNA-Seq 10.9 MB
5_S5_L001_R1_001.fastq.gz RNA-Seq 10.9 MB
5_S5_L001_R1_001.fastq.gz RNA-Seq 10.9 MB
6_S6_L001_R1_001.fastq.gz RNA-Seq 14.1 MB
6_S6_L001_R1_001.fastq.gz RNA-Seq 14.1 MB
6_S6_L001_R1_001.fastq.gz RNA-Seq 14.1 MB
6_S6_L001_R1_001.fastq.gz RNA-Seq 14.1 MB
7_S7_L001_R1_001.fastq.gz RNA-Seq 14.4 MB
7_S7_L001_R1_001.fastq.gz RNA-Seq 14.4 MB
7_S7_L001_R1_001.fastq.gz RNA-Seq 14.4 MB
7_S7_L001_R1_001.fastq.gz RNA-Seq 14.4 MB
8_S8_L001_R1_001.fastq.gz RNA-Seq 15.7 MB
8_S8_L001_R1_001.fastq.gz RNA-Seq 15.7 MB
8_S8_L001_R1_001.fastq.gz RNA-Seq 15.7 MB
8_S8_L001_R1_001.fastq.gz RNA-Seq 15.7 MB
9_S9_L001_R1_001.fastq.gz RNA-Seq 15.4 MB
9_S9_L001_R1_001.fastq.gz RNA-Seq 15.4 MB
9_S9_L001_R1_001.fastq.gz RNA-Seq 15.4 MB
9_S9_L001_R1_001.fastq.gz RNA-Seq 15.4 MB

Potentially Related Datasets (2)

These accessions were text-mined from the PMC full text. They may be referenced for comparison, cited from other studies, or otherwise mentioned without being primary data for this paper.

FLARE: A fast and flexible peak-calling pipeline for identifying RNA editing foci

Expanded palette of RNA base editors for comprehensive RBP-RNA interactome studies

Analysis Pipelines (6)

geo_data_processing GSE232513
RNA-seq geo_data_processing GSE232514
geo_data_processing GSE232515
geo_data_processing GSE232518
geo_data_processing GSE232519
geo_data_processing GSE232520