High-sensitivity in situ capture of endogenous RNA-protein interactions in fixed cells and primary tissues.
Qishan Liang,
Tao Yu,
Eric Kofman,
Pratibha Jagannatha,
Kevin Rhine,
Brian A Yee,
Kevin D Corbett,
Gene W Yeo
Nature communications
· 2024
· Vol. 15
(1)
· pp. 7067
Abstract
RNA-binding proteins (RBPs) have pivotal functions in RNA metabolism, but current methods are limited in retrieving RBP-RNA interactions within endogenous biological contexts. Here, we develop INSCRIBE (IN situ Sensitive Capture of RNA-protein Interactions in Biological Environments), circumventing the challenges through in situ RNA labeling by precisely directing a purified APOBEC1-nanobody fusion to the RBP of interest. This method enables highly specific RNA-binding site identification across a diverse range of fixed biological samples such as HEK293T cells and mouse brain tissue and accurately identifies the canonical binding motifs of RBFOX2 (UGCAUG) and TDP-43 (UGUGUG) in native cellular environments. Applicable to any RBP with available primary antibodies, INSCRIBE enables sensitive capture of RBP-RNA interactions from ultra-low input equivalent to ~5 cells. The robust, versatile, and sensitive INSCRIBE workflow is particularly beneficial for precious tissues such as clinical samples, empowering the exploration of genuine RBP-RNA interactions in RNA-related disease contexts.
Publication Types
["Journal Article"]
Keywords
MeSH Terms
["Humans", "Animals", "HEK293 Cells", "Mice", "RNA-Binding Proteins", "RNA", "RNA Splicing Factors", "DNA-Binding Proteins", "Binding Sites", "Protein Binding", "Brain", "Repressor Proteins"]
Funding
S10 OD026929
NIH HHS
(United States)
R01 HG004659
NHGRI NIH HHS
(United States)
U24 HG011735
NHGRI NIH HHS
(United States)
RF1 MH126719
NIMH NIH HHS
(United States)
R01 HG011864
NHGRI NIH HHS
(United States)
R35 GM144121
NIGMS NIH HHS
(United States)
P30 CA014195
NCI NIH HHS
(United States)
S10 OD025052
NIH HHS
(United States)
Linked Datasets (13)
Expanded repertoire for RNA-editing-based detection for RNA binding protein interactions (3)
Homo sapiens96 data files
| File | Type | Size |
|---|---|---|
| Hugo-A1_S1_L001_R1_001.fastq.gz | RNA-Seq | 474.9 MB |
| Hugo-A1_S1_L001_R1_001.fastq.gz | RNA-Seq | 474.9 MB |
| Hugo-A1_S1_L001_R1_001.fastq.gz | RNA-Seq | 474.9 MB |
| Hugo-A1_S1_L001_R1_001.fastq.gz | RNA-Seq | 474.9 MB |
| Hugo-A2_S2_L001_R1_001.fastq.gz | RNA-Seq | 482.3 MB |
| Hugo-A2_S2_L001_R1_001.fastq.gz | RNA-Seq | 482.3 MB |
| Hugo-A2_S2_L001_R1_001.fastq.gz | RNA-Seq | 482.3 MB |
| Hugo-A2_S2_L001_R1_001.fastq.gz | RNA-Seq | 482.3 MB |
| Hugo-A3_S11_L001_R1_001.fastq.gz | RNA-Seq | 342.7 MB |
| Hugo-A3_S11_L001_R1_001.fastq.gz | RNA-Seq | 342.7 MB |
| Hugo-A3_S11_L001_R1_001.fastq.gz | RNA-Seq | 342.7 MB |
| Hugo-A3_S11_L001_R1_001.fastq.gz | RNA-Seq | 342.7 MB |
| Hugo-B2_S7_L001_R1_001.fastq.gz | RNA-Seq | 375.6 MB |
| Hugo-B2_S7_L001_R1_001.fastq.gz | RNA-Seq | 375.6 MB |
| Hugo-B2_S7_L001_R1_001.fastq.gz | RNA-Seq | 375.6 MB |
| Hugo-B2_S7_L001_R1_001.fastq.gz | RNA-Seq | 375.6 MB |
| Hugo-B3_S8_L001_R1_001.fastq.gz | RNA-Seq | 461.3 MB |
| Hugo-B3_S8_L001_R1_001.fastq.gz | RNA-Seq | 461.3 MB |
| Hugo-B3_S8_L001_R1_001.fastq.gz | RNA-Seq | 461.3 MB |
| Hugo-B3_S8_L001_R1_001.fastq.gz | RNA-Seq | 461.3 MB |
| Hugo-B4_S14_L001_R1_001.fastq.gz | RNA-Seq | 437.5 MB |
| Hugo-B4_S14_L001_R1_001.fastq.gz | RNA-Seq | 437.5 MB |
| Hugo-B4_S14_L001_R1_001.fastq.gz | RNA-Seq | 437.5 MB |
| Hugo-B4_S14_L001_R1_001.fastq.gz | RNA-Seq | 437.5 MB |
| Hugo-B5_S9_L001_R1_001.fastq.gz | RNA-Seq | 502.8 MB |
| Hugo-B5_S9_L001_R1_001.fastq.gz | RNA-Seq | 502.8 MB |
| Hugo-B5_S9_L001_R1_001.fastq.gz | RNA-Seq | 502.8 MB |
| Hugo-B5_S9_L001_R1_001.fastq.gz | RNA-Seq | 502.8 MB |
| Hugo-B6_S10_L001_R1_001.fastq.gz | RNA-Seq | 545.7 MB |
| Hugo-B6_S10_L001_R1_001.fastq.gz | RNA-Seq | 545.7 MB |
| Hugo-B6_S10_L001_R1_001.fastq.gz | RNA-Seq | 545.7 MB |
| Hugo-B6_S10_L001_R1_001.fastq.gz | RNA-Seq | 545.7 MB |
| Hugo-B7_S15_L001_R1_001.fastq.gz | RNA-Seq | 366.1 MB |
| Hugo-B7_S15_L001_R1_001.fastq.gz | RNA-Seq | 366.1 MB |
| Hugo-B7_S15_L001_R1_001.fastq.gz | RNA-Seq | 366.1 MB |
| Hugo-B7_S15_L001_R1_001.fastq.gz | RNA-Seq | 366.1 MB |
| Hugo-D4_S75_L002_R1_001.fastq.gz | RNA-Seq | 488.1 MB |
| Hugo-D4_S75_L002_R1_001.fastq.gz | RNA-Seq | 488.1 MB |
| Hugo-D4_S75_L002_R1_001.fastq.gz | RNA-Seq | 488.1 MB |
| Hugo-D4_S75_L002_R1_001.fastq.gz | RNA-Seq | 488.1 MB |
| Hugo-D5_S76_L002_R1_001.fastq.gz | RNA-Seq | 534.0 MB |
| Hugo-D5_S76_L002_R1_001.fastq.gz | RNA-Seq | 534.0 MB |
| Hugo-D5_S76_L002_R1_001.fastq.gz | RNA-Seq | 534.0 MB |
| Hugo-D5_S76_L002_R1_001.fastq.gz | RNA-Seq | 534.0 MB |
| Hugo-D6_S30_L002_R1_001.fastq.gz | RNA-Seq | 439.1 MB |
| Hugo-D6_S30_L002_R1_001.fastq.gz | RNA-Seq | 439.1 MB |
| Hugo-D6_S30_L002_R1_001.fastq.gz | RNA-Seq | 439.1 MB |
| Hugo-D6_S30_L002_R1_001.fastq.gz | RNA-Seq | 439.1 MB |
| Hugo-D7_S77_L002_R1_001.fastq.gz | RNA-Seq | 521.1 MB |
| Hugo-D7_S77_L002_R1_001.fastq.gz | RNA-Seq | 521.1 MB |
| Hugo-D7_S77_L002_R1_001.fastq.gz | RNA-Seq | 521.1 MB |
| Hugo-D7_S77_L002_R1_001.fastq.gz | RNA-Seq | 521.1 MB |
| Hugo-D8_S78_L002_R1_001.fastq.gz | RNA-Seq | 414.7 MB |
| Hugo-D8_S78_L002_R1_001.fastq.gz | RNA-Seq | 414.7 MB |
| Hugo-D8_S78_L002_R1_001.fastq.gz | RNA-Seq | 414.7 MB |
| Hugo-D8_S78_L002_R1_001.fastq.gz | RNA-Seq | 414.7 MB |
| Hugo-E1_S31_L002_R1_001.fastq.gz | RNA-Seq | 432.5 MB |
| Hugo-E1_S31_L002_R1_001.fastq.gz | RNA-Seq | 432.5 MB |
| Hugo-E1_S31_L002_R1_001.fastq.gz | RNA-Seq | 432.5 MB |
| Hugo-E1_S31_L002_R1_001.fastq.gz | RNA-Seq | 432.5 MB |
| Hugo-E2_S79_L002_R1_001.fastq.gz | RNA-Seq | 623.7 MB |
| Hugo-E2_S79_L002_R1_001.fastq.gz | RNA-Seq | 623.7 MB |
| Hugo-E2_S79_L002_R1_001.fastq.gz | RNA-Seq | 623.7 MB |
| Hugo-E2_S79_L002_R1_001.fastq.gz | RNA-Seq | 623.7 MB |
| Hugo-E3_S80_L002_R1_001.fastq.gz | RNA-Seq | 571.2 MB |
| Hugo-E3_S80_L002_R1_001.fastq.gz | RNA-Seq | 571.2 MB |
| Hugo-E3_S80_L002_R1_001.fastq.gz | RNA-Seq | 571.2 MB |
| Hugo-E3_S80_L002_R1_001.fastq.gz | RNA-Seq | 571.2 MB |
| Hugo-E4_S32_L002_R1_001.fastq.gz | RNA-Seq | 550.4 MB |
| Hugo-E4_S32_L002_R1_001.fastq.gz | RNA-Seq | 550.4 MB |
| Hugo-E4_S32_L002_R1_001.fastq.gz | RNA-Seq | 550.4 MB |
| Hugo-E4_S32_L002_R1_001.fastq.gz | RNA-Seq | 550.4 MB |
| Hugo-E5_S81_L002_R1_001.fastq.gz | RNA-Seq | 480.7 MB |
| Hugo-E5_S81_L002_R1_001.fastq.gz | RNA-Seq | 480.7 MB |
| Hugo-E5_S81_L002_R1_001.fastq.gz | RNA-Seq | 480.7 MB |
| Hugo-E5_S81_L002_R1_001.fastq.gz | RNA-Seq | 480.7 MB |
| Hugo-E6_S82_L002_R1_001.fastq.gz | RNA-Seq | 515.3 MB |
| Hugo-E6_S82_L002_R1_001.fastq.gz | RNA-Seq | 515.3 MB |
| Hugo-E6_S82_L002_R1_001.fastq.gz | RNA-Seq | 515.3 MB |
| Hugo-E6_S82_L002_R1_001.fastq.gz | RNA-Seq | 515.3 MB |
| Hugo-E7_S33_L002_R1_001.fastq.gz | RNA-Seq | 456.3 MB |
| Hugo-E7_S33_L002_R1_001.fastq.gz | RNA-Seq | 456.3 MB |
| Hugo-E7_S33_L002_R1_001.fastq.gz | RNA-Seq | 456.3 MB |
| Hugo-E7_S33_L002_R1_001.fastq.gz | RNA-Seq | 456.3 MB |
| Hugo-E8_S83_L002_R1_001.fastq.gz | RNA-Seq | 474.5 MB |
| Hugo-E8_S83_L002_R1_001.fastq.gz | RNA-Seq | 474.5 MB |
| Hugo-E8_S83_L002_R1_001.fastq.gz | RNA-Seq | 474.5 MB |
| Hugo-E8_S83_L002_R1_001.fastq.gz | RNA-Seq | 474.5 MB |
| Hugo-F1_S84_L002_R1_001.fastq.gz | RNA-Seq | 504.2 MB |
| Hugo-F1_S84_L002_R1_001.fastq.gz | RNA-Seq | 504.2 MB |
| Hugo-F1_S84_L002_R1_001.fastq.gz | RNA-Seq | 504.2 MB |
| Hugo-F1_S84_L002_R1_001.fastq.gz | RNA-Seq | 504.2 MB |
| Hugo-F2_S34_L002_R1_001.fastq.gz | RNA-Seq | 498.8 MB |
| Hugo-F2_S34_L002_R1_001.fastq.gz | RNA-Seq | 498.8 MB |
| Hugo-F2_S34_L002_R1_001.fastq.gz | RNA-Seq | 498.8 MB |
| Hugo-F2_S34_L002_R1_001.fastq.gz | RNA-Seq | 498.8 MB |
Expanded repertoire of RNA-editing-based detection for RNA binding protein interactions (1)
Homo sapiens304 data files
| File | Type | Size |
|---|---|---|
| 10_S10_L001_R1_001.fastq.gz | RNA-Seq | 18.7 MB |
| 10_S10_L001_R1_001.fastq.gz | RNA-Seq | 18.7 MB |
| 10_S10_L001_R1_001.fastq.gz | RNA-Seq | 18.7 MB |
| 10_S10_L001_R1_001.fastq.gz | RNA-Seq | 18.7 MB |
| 11_S11_L001_R1_001.fastq.gz | RNA-Seq | 19.1 MB |
| 11_S11_L001_R1_001.fastq.gz | RNA-Seq | 19.1 MB |
| 11_S11_L001_R1_001.fastq.gz | RNA-Seq | 19.1 MB |
| 11_S11_L001_R1_001.fastq.gz | RNA-Seq | 19.1 MB |
| 12_S12_L001_R1_001.fastq.gz | RNA-Seq | 19.7 MB |
| 12_S12_L001_R1_001.fastq.gz | RNA-Seq | 19.7 MB |
| 12_S12_L001_R1_001.fastq.gz | RNA-Seq | 19.7 MB |
| 12_S12_L001_R1_001.fastq.gz | RNA-Seq | 19.7 MB |
| 13_S13_L001_R1_001.fastq.gz | RNA-Seq | 19.2 MB |
| 13_S13_L001_R1_001.fastq.gz | RNA-Seq | 19.2 MB |
| 13_S13_L001_R1_001.fastq.gz | RNA-Seq | 19.2 MB |
| 13_S13_L001_R1_001.fastq.gz | RNA-Seq | 19.2 MB |
| 14_S14_L001_R1_001.fastq.gz | RNA-Seq | 20.5 MB |
| 14_S14_L001_R1_001.fastq.gz | RNA-Seq | 20.5 MB |
| 14_S14_L001_R1_001.fastq.gz | RNA-Seq | 20.5 MB |
| 14_S14_L001_R1_001.fastq.gz | RNA-Seq | 20.5 MB |
| 15_S15_L001_R1_001.fastq.gz | RNA-Seq | 18.6 MB |
| 15_S15_L001_R1_001.fastq.gz | RNA-Seq | 18.6 MB |
| 15_S15_L001_R1_001.fastq.gz | RNA-Seq | 18.6 MB |
| 15_S15_L001_R1_001.fastq.gz | RNA-Seq | 18.6 MB |
| 16_S16_L001_R1_001.fastq.gz | RNA-Seq | 19.7 MB |
| 16_S16_L001_R1_001.fastq.gz | RNA-Seq | 19.7 MB |
| 16_S16_L001_R1_001.fastq.gz | RNA-Seq | 19.7 MB |
| 16_S16_L001_R1_001.fastq.gz | RNA-Seq | 19.7 MB |
| 17_S17_L001_R1_001.fastq.gz | RNA-Seq | 21.5 MB |
| 17_S17_L001_R1_001.fastq.gz | RNA-Seq | 21.5 MB |
| 17_S17_L001_R1_001.fastq.gz | RNA-Seq | 21.5 MB |
| 17_S17_L001_R1_001.fastq.gz | RNA-Seq | 21.5 MB |
| 18_S18_L001_R1_001.fastq.gz | RNA-Seq | 20.6 MB |
| 18_S18_L001_R1_001.fastq.gz | RNA-Seq | 20.6 MB |
| 18_S18_L001_R1_001.fastq.gz | RNA-Seq | 20.6 MB |
| 18_S18_L001_R1_001.fastq.gz | RNA-Seq | 20.6 MB |
| 19_S19_L001_R1_001.fastq.gz | RNA-Seq | 20.4 MB |
| 19_S19_L001_R1_001.fastq.gz | RNA-Seq | 20.4 MB |
| 19_S19_L001_R1_001.fastq.gz | RNA-Seq | 20.4 MB |
| 19_S19_L001_R1_001.fastq.gz | RNA-Seq | 20.4 MB |
| 1_S1_L001_R1_001.fastq.gz | RNA-Seq | 15.9 MB |
| 1_S1_L001_R1_001.fastq.gz | RNA-Seq | 15.9 MB |
| 1_S1_L001_R1_001.fastq.gz | RNA-Seq | 15.9 MB |
| 1_S1_L001_R1_001.fastq.gz | RNA-Seq | 15.9 MB |
| 20_S20_L001_R1_001.fastq.gz | RNA-Seq | 20.4 MB |
| 20_S20_L001_R1_001.fastq.gz | RNA-Seq | 20.4 MB |
| 20_S20_L001_R1_001.fastq.gz | RNA-Seq | 20.4 MB |
| 20_S20_L001_R1_001.fastq.gz | RNA-Seq | 20.4 MB |
| 21_S21_L001_R1_001.fastq.gz | RNA-Seq | 20.2 MB |
| 21_S21_L001_R1_001.fastq.gz | RNA-Seq | 20.2 MB |
| 21_S21_L001_R1_001.fastq.gz | RNA-Seq | 20.2 MB |
| 21_S21_L001_R1_001.fastq.gz | RNA-Seq | 20.2 MB |
| 22_S22_L001_R1_001.fastq.gz | RNA-Seq | 19.9 MB |
| 22_S22_L001_R1_001.fastq.gz | RNA-Seq | 19.9 MB |
| 22_S22_L001_R1_001.fastq.gz | RNA-Seq | 19.9 MB |
| 22_S22_L001_R1_001.fastq.gz | RNA-Seq | 19.9 MB |
| 23_S23_L001_R1_001.fastq.gz | RNA-Seq | 18.9 MB |
| 23_S23_L001_R1_001.fastq.gz | RNA-Seq | 18.9 MB |
| 23_S23_L001_R1_001.fastq.gz | RNA-Seq | 18.9 MB |
| 23_S23_L001_R1_001.fastq.gz | RNA-Seq | 18.9 MB |
| 24_S24_L001_R1_001.fastq.gz | RNA-Seq | 16.6 MB |
| 24_S24_L001_R1_001.fastq.gz | RNA-Seq | 16.6 MB |
| 24_S24_L001_R1_001.fastq.gz | RNA-Seq | 16.6 MB |
| 24_S24_L001_R1_001.fastq.gz | RNA-Seq | 16.6 MB |
| 25_S25_L001_R1_001.fastq.gz | RNA-Seq | 21.9 MB |
| 25_S25_L001_R1_001.fastq.gz | RNA-Seq | 21.9 MB |
| 25_S25_L001_R1_001.fastq.gz | RNA-Seq | 21.9 MB |
| 25_S25_L001_R1_001.fastq.gz | RNA-Seq | 21.9 MB |
| 26_S26_L001_R1_001.fastq.gz | RNA-Seq | 21.1 MB |
| 26_S26_L001_R1_001.fastq.gz | RNA-Seq | 21.1 MB |
| 26_S26_L001_R1_001.fastq.gz | RNA-Seq | 21.1 MB |
| 26_S26_L001_R1_001.fastq.gz | RNA-Seq | 21.1 MB |
| 27_S27_L001_R1_001.fastq.gz | RNA-Seq | 19.0 MB |
| 27_S27_L001_R1_001.fastq.gz | RNA-Seq | 19.0 MB |
| 27_S27_L001_R1_001.fastq.gz | RNA-Seq | 19.0 MB |
| 27_S27_L001_R1_001.fastq.gz | RNA-Seq | 19.0 MB |
| 28_S28_L001_R1_001.fastq.gz | RNA-Seq | 18.9 MB |
| 28_S28_L001_R1_001.fastq.gz | RNA-Seq | 18.9 MB |
| 28_S28_L001_R1_001.fastq.gz | RNA-Seq | 18.9 MB |
| 28_S28_L001_R1_001.fastq.gz | RNA-Seq | 18.9 MB |
| 29_S29_L001_R1_001.fastq.gz | RNA-Seq | 18.7 MB |
| 29_S29_L001_R1_001.fastq.gz | RNA-Seq | 18.7 MB |
| 29_S29_L001_R1_001.fastq.gz | RNA-Seq | 18.7 MB |
| 29_S29_L001_R1_001.fastq.gz | RNA-Seq | 18.7 MB |
| 2_S2_L001_R1_001.fastq.gz | RNA-Seq | 17.6 MB |
| 2_S2_L001_R1_001.fastq.gz | RNA-Seq | 17.6 MB |
| 2_S2_L001_R1_001.fastq.gz | RNA-Seq | 17.6 MB |
| 2_S2_L001_R1_001.fastq.gz | RNA-Seq | 17.6 MB |
| 30_S30_L001_R1_001.fastq.gz | RNA-Seq | 18.2 MB |
| 30_S30_L001_R1_001.fastq.gz | RNA-Seq | 18.2 MB |
| 30_S30_L001_R1_001.fastq.gz | RNA-Seq | 18.2 MB |
| 30_S30_L001_R1_001.fastq.gz | RNA-Seq | 18.2 MB |
| 3_S3_L001_R1_001.fastq.gz | RNA-Seq | 20.2 MB |
| 3_S3_L001_R1_001.fastq.gz | RNA-Seq | 20.2 MB |
| 3_S3_L001_R1_001.fastq.gz | RNA-Seq | 20.2 MB |
| 3_S3_L001_R1_001.fastq.gz | RNA-Seq | 20.2 MB |
| 4_S4_L001_R1_001.fastq.gz | RNA-Seq | 19.0 MB |
| 4_S4_L001_R1_001.fastq.gz | RNA-Seq | 19.0 MB |
| 4_S4_L001_R1_001.fastq.gz | RNA-Seq | 19.0 MB |
| 4_S4_L001_R1_001.fastq.gz | RNA-Seq | 19.0 MB |
| 5_S5_L001_R1_001.fastq.gz | RNA-Seq | 20.1 MB |
| 5_S5_L001_R1_001.fastq.gz | RNA-Seq | 20.1 MB |
| 5_S5_L001_R1_001.fastq.gz | RNA-Seq | 20.1 MB |
| 5_S5_L001_R1_001.fastq.gz | RNA-Seq | 20.1 MB |
| 6_S6_L001_R1_001.fastq.gz | RNA-Seq | 18.8 MB |
| 6_S6_L001_R1_001.fastq.gz | RNA-Seq | 18.8 MB |
| 6_S6_L001_R1_001.fastq.gz | RNA-Seq | 18.8 MB |
| 6_S6_L001_R1_001.fastq.gz | RNA-Seq | 18.8 MB |
| 7_S7_L001_R1_001.fastq.gz | RNA-Seq | 16.4 MB |
| 7_S7_L001_R1_001.fastq.gz | RNA-Seq | 16.4 MB |
| 7_S7_L001_R1_001.fastq.gz | RNA-Seq | 16.4 MB |
| 7_S7_L001_R1_001.fastq.gz | RNA-Seq | 16.4 MB |
| 8_S8_L001_R1_001.fastq.gz | RNA-Seq | 20.0 MB |
| 8_S8_L001_R1_001.fastq.gz | RNA-Seq | 20.0 MB |
| 8_S8_L001_R1_001.fastq.gz | RNA-Seq | 20.0 MB |
| 8_S8_L001_R1_001.fastq.gz | RNA-Seq | 20.0 MB |
| 9_S9_L001_R1_001.fastq.gz | RNA-Seq | 18.7 MB |
| 9_S9_L001_R1_001.fastq.gz | RNA-Seq | 18.7 MB |
| 9_S9_L001_R1_001.fastq.gz | RNA-Seq | 18.7 MB |
| 9_S9_L001_R1_001.fastq.gz | RNA-Seq | 18.7 MB |
| A10_S8_L001_R1_001.fastq.gz | RNA-Seq | 73.0 MB |
| A10_S8_L001_R1_001.fastq.gz | RNA-Seq | 73.0 MB |
| A10_S8_L001_R1_001.fastq.gz | RNA-Seq | 73.0 MB |
| A10_S8_L001_R1_001.fastq.gz | RNA-Seq | 73.0 MB |
| A11_S9_L001_R1_001.fastq.gz | RNA-Seq | 84.0 MB |
| A11_S9_L001_R1_001.fastq.gz | RNA-Seq | 84.0 MB |
| A11_S9_L001_R1_001.fastq.gz | RNA-Seq | 84.0 MB |
| A11_S9_L001_R1_001.fastq.gz | RNA-Seq | 84.0 MB |
| A12_S10_L001_R1_001.fastq.gz | RNA-Seq | 96.3 MB |
| A12_S10_L001_R1_001.fastq.gz | RNA-Seq | 96.3 MB |
| A12_S10_L001_R1_001.fastq.gz | RNA-Seq | 96.3 MB |
| A12_S10_L001_R1_001.fastq.gz | RNA-Seq | 96.3 MB |
| A3_S1_L001_R1_001.fastq.gz | RNA-Seq | 83.2 MB |
| A3_S1_L001_R1_001.fastq.gz | RNA-Seq | 83.2 MB |
| A3_S1_L001_R1_001.fastq.gz | RNA-Seq | 83.2 MB |
| A3_S1_L001_R1_001.fastq.gz | RNA-Seq | 83.2 MB |
| A4_S2_L001_R1_001.fastq.gz | RNA-Seq | 68.2 MB |
| A4_S2_L001_R1_001.fastq.gz | RNA-Seq | 68.2 MB |
| A4_S2_L001_R1_001.fastq.gz | RNA-Seq | 68.2 MB |
| A4_S2_L001_R1_001.fastq.gz | RNA-Seq | 68.2 MB |
| A5_S3_L001_R1_001.fastq.gz | RNA-Seq | 79.7 MB |
| A5_S3_L001_R1_001.fastq.gz | RNA-Seq | 79.7 MB |
| A5_S3_L001_R1_001.fastq.gz | RNA-Seq | 79.7 MB |
| A5_S3_L001_R1_001.fastq.gz | RNA-Seq | 79.7 MB |
| A6_S4_L001_R1_001.fastq.gz | RNA-Seq | 79.9 MB |
| A6_S4_L001_R1_001.fastq.gz | RNA-Seq | 79.9 MB |
| A6_S4_L001_R1_001.fastq.gz | RNA-Seq | 79.9 MB |
| A6_S4_L001_R1_001.fastq.gz | RNA-Seq | 79.9 MB |
| A7_S5_L001_R1_001.fastq.gz | RNA-Seq | 75.8 MB |
| A7_S5_L001_R1_001.fastq.gz | RNA-Seq | 75.8 MB |
| A7_S5_L001_R1_001.fastq.gz | RNA-Seq | 75.8 MB |
| A7_S5_L001_R1_001.fastq.gz | RNA-Seq | 75.8 MB |
| A8_S6_L001_R1_001.fastq.gz | RNA-Seq | 75.5 MB |
| A8_S6_L001_R1_001.fastq.gz | RNA-Seq | 75.5 MB |
| A8_S6_L001_R1_001.fastq.gz | RNA-Seq | 75.5 MB |
| A8_S6_L001_R1_001.fastq.gz | RNA-Seq | 75.5 MB |
| A9_S7_L001_R1_001.fastq.gz | RNA-Seq | 83.8 MB |
| A9_S7_L001_R1_001.fastq.gz | RNA-Seq | 83.8 MB |
| A9_S7_L001_R1_001.fastq.gz | RNA-Seq | 83.8 MB |
| A9_S7_L001_R1_001.fastq.gz | RNA-Seq | 83.8 MB |
| B10_S20_L001_R1_001.fastq.gz | RNA-Seq | 83.5 MB |
| B10_S20_L001_R1_001.fastq.gz | RNA-Seq | 83.5 MB |
| B10_S20_L001_R1_001.fastq.gz | RNA-Seq | 83.5 MB |
| B10_S20_L001_R1_001.fastq.gz | RNA-Seq | 83.5 MB |
| B11_S21_L001_R1_001.fastq.gz | RNA-Seq | 94.7 MB |
| B11_S21_L001_R1_001.fastq.gz | RNA-Seq | 94.7 MB |
| B11_S21_L001_R1_001.fastq.gz | RNA-Seq | 94.7 MB |
| B11_S21_L001_R1_001.fastq.gz | RNA-Seq | 94.7 MB |
| B12_S22_L001_R1_001.fastq.gz | RNA-Seq | 125.3 MB |
| B12_S22_L001_R1_001.fastq.gz | RNA-Seq | 125.3 MB |
| B12_S22_L001_R1_001.fastq.gz | RNA-Seq | 125.3 MB |
| B12_S22_L001_R1_001.fastq.gz | RNA-Seq | 125.3 MB |
| B1_S11_L001_R1_001.fastq.gz | RNA-Seq | 94.4 MB |
| B1_S11_L001_R1_001.fastq.gz | RNA-Seq | 94.4 MB |
| B1_S11_L001_R1_001.fastq.gz | RNA-Seq | 94.4 MB |
| B1_S11_L001_R1_001.fastq.gz | RNA-Seq | 94.4 MB |
| B2_S12_L001_R1_001.fastq.gz | RNA-Seq | 76.3 MB |
| B2_S12_L001_R1_001.fastq.gz | RNA-Seq | 76.3 MB |
| B2_S12_L001_R1_001.fastq.gz | RNA-Seq | 76.3 MB |
| B2_S12_L001_R1_001.fastq.gz | RNA-Seq | 76.3 MB |
| B3_S13_L001_R1_001.fastq.gz | RNA-Seq | 70.7 MB |
| B3_S13_L001_R1_001.fastq.gz | RNA-Seq | 70.7 MB |
| B3_S13_L001_R1_001.fastq.gz | RNA-Seq | 70.7 MB |
| B3_S13_L001_R1_001.fastq.gz | RNA-Seq | 70.7 MB |
| B4_S14_L001_R1_001.fastq.gz | RNA-Seq | 81.2 MB |
| B4_S14_L001_R1_001.fastq.gz | RNA-Seq | 81.2 MB |
| B4_S14_L001_R1_001.fastq.gz | RNA-Seq | 81.2 MB |
| B4_S14_L001_R1_001.fastq.gz | RNA-Seq | 81.2 MB |
| B5_S15_L001_R1_001.fastq.gz | RNA-Seq | 41.7 MB |
| B5_S15_L001_R1_001.fastq.gz | RNA-Seq | 41.7 MB |
| B5_S15_L001_R1_001.fastq.gz | RNA-Seq | 41.7 MB |
| B5_S15_L001_R1_001.fastq.gz | RNA-Seq | 41.7 MB |
| B6_S16_L001_R1_001.fastq.gz | RNA-Seq | 44.8 MB |
| B6_S16_L001_R1_001.fastq.gz | RNA-Seq | 44.8 MB |
| B6_S16_L001_R1_001.fastq.gz | RNA-Seq | 44.8 MB |
| B6_S16_L001_R1_001.fastq.gz | RNA-Seq | 44.8 MB |
| B7_S17_L001_R1_001.fastq.gz | RNA-Seq | 76.3 MB |
| B7_S17_L001_R1_001.fastq.gz | RNA-Seq | 76.3 MB |
| B7_S17_L001_R1_001.fastq.gz | RNA-Seq | 76.3 MB |
| B7_S17_L001_R1_001.fastq.gz | RNA-Seq | 76.3 MB |
| B8_S18_L001_R1_001.fastq.gz | RNA-Seq | 78.7 MB |
| B8_S18_L001_R1_001.fastq.gz | RNA-Seq | 78.7 MB |
| B8_S18_L001_R1_001.fastq.gz | RNA-Seq | 78.7 MB |
| B8_S18_L001_R1_001.fastq.gz | RNA-Seq | 78.7 MB |
| B9_S19_L001_R1_001.fastq.gz | RNA-Seq | 86.7 MB |
| B9_S19_L001_R1_001.fastq.gz | RNA-Seq | 86.7 MB |
| B9_S19_L001_R1_001.fastq.gz | RNA-Seq | 86.7 MB |
| B9_S19_L001_R1_001.fastq.gz | RNA-Seq | 86.7 MB |
| C10_S8_L001_R1_001.fastq.gz | RNA-Seq | 321.2 MB |
| C10_S8_L001_R1_001.fastq.gz | RNA-Seq | 321.2 MB |
| C10_S8_L001_R1_001.fastq.gz | RNA-Seq | 321.2 MB |
| C10_S8_L001_R1_001.fastq.gz | RNA-Seq | 321.2 MB |
| C11_S9_L001_R1_001.fastq.gz | RNA-Seq | 304.0 MB |
| C11_S9_L001_R1_001.fastq.gz | RNA-Seq | 304.0 MB |
| C11_S9_L001_R1_001.fastq.gz | RNA-Seq | 304.0 MB |
| C11_S9_L001_R1_001.fastq.gz | RNA-Seq | 304.0 MB |
| C12_S10_L001_R1_001.fastq.gz | RNA-Seq | 696.3 KB |
| C12_S10_L001_R1_001.fastq.gz | RNA-Seq | 696.3 KB |
| C12_S10_L001_R1_001.fastq.gz | RNA-Seq | 696.3 KB |
| C12_S10_L001_R1_001.fastq.gz | RNA-Seq | 696.3 KB |
| C1_S23_L001_R1_001.fastq.gz | RNA-Seq | 107.5 MB |
| C1_S23_L001_R1_001.fastq.gz | RNA-Seq | 107.5 MB |
| C1_S23_L001_R1_001.fastq.gz | RNA-Seq | 107.5 MB |
| C1_S23_L001_R1_001.fastq.gz | RNA-Seq | 107.5 MB |
| C2_S24_L001_R1_001.fastq.gz | RNA-Seq | 123.1 MB |
| C2_S24_L001_R1_001.fastq.gz | RNA-Seq | 123.1 MB |
| C2_S24_L001_R1_001.fastq.gz | RNA-Seq | 123.1 MB |
| C2_S24_L001_R1_001.fastq.gz | RNA-Seq | 123.1 MB |
| C3_S1_L001_R1_001.fastq.gz | RNA-Seq | 291.9 MB |
| C3_S1_L001_R1_001.fastq.gz | RNA-Seq | 291.9 MB |
| C3_S1_L001_R1_001.fastq.gz | RNA-Seq | 291.9 MB |
| C3_S1_L001_R1_001.fastq.gz | RNA-Seq | 291.9 MB |
| C4_S2_L001_R1_001.fastq.gz | RNA-Seq | 367.6 MB |
| C4_S2_L001_R1_001.fastq.gz | RNA-Seq | 367.6 MB |
| C4_S2_L001_R1_001.fastq.gz | RNA-Seq | 367.6 MB |
| C4_S2_L001_R1_001.fastq.gz | RNA-Seq | 367.6 MB |
| C5_S3_L001_R1_001.fastq.gz | RNA-Seq | 301.4 MB |
| C5_S3_L001_R1_001.fastq.gz | RNA-Seq | 301.4 MB |
| C5_S3_L001_R1_001.fastq.gz | RNA-Seq | 301.4 MB |
| C5_S3_L001_R1_001.fastq.gz | RNA-Seq | 301.4 MB |
| C6_S4_L001_R1_001.fastq.gz | RNA-Seq | 289.3 MB |
| C6_S4_L001_R1_001.fastq.gz | RNA-Seq | 289.3 MB |
| C6_S4_L001_R1_001.fastq.gz | RNA-Seq | 289.3 MB |
| C6_S4_L001_R1_001.fastq.gz | RNA-Seq | 289.3 MB |
| C7_S5_L001_R1_001.fastq.gz | RNA-Seq | 292.9 MB |
| C7_S5_L001_R1_001.fastq.gz | RNA-Seq | 292.9 MB |
| C7_S5_L001_R1_001.fastq.gz | RNA-Seq | 292.9 MB |
| C7_S5_L001_R1_001.fastq.gz | RNA-Seq | 292.9 MB |
| C8_S6_L001_R1_001.fastq.gz | RNA-Seq | 295.3 MB |
| C8_S6_L001_R1_001.fastq.gz | RNA-Seq | 295.3 MB |
| C8_S6_L001_R1_001.fastq.gz | RNA-Seq | 295.3 MB |
| C8_S6_L001_R1_001.fastq.gz | RNA-Seq | 295.3 MB |
| C9_S7_L001_R1_001.fastq.gz | RNA-Seq | 283.4 MB |
| C9_S7_L001_R1_001.fastq.gz | RNA-Seq | 283.4 MB |
| C9_S7_L001_R1_001.fastq.gz | RNA-Seq | 283.4 MB |
| C9_S7_L001_R1_001.fastq.gz | RNA-Seq | 283.4 MB |
| D10_S18_L001_R1_001.fastq.gz | RNA-Seq | 273.6 MB |
| D10_S18_L001_R1_001.fastq.gz | RNA-Seq | 273.6 MB |
| D10_S18_L001_R1_001.fastq.gz | RNA-Seq | 273.6 MB |
| D10_S18_L001_R1_001.fastq.gz | RNA-Seq | 273.6 MB |
| D11_S19_L001_R1_001.fastq.gz | RNA-Seq | 124.6 MB |
| D11_S19_L001_R1_001.fastq.gz | RNA-Seq | 124.6 MB |
| D11_S19_L001_R1_001.fastq.gz | RNA-Seq | 124.6 MB |
| D11_S19_L001_R1_001.fastq.gz | RNA-Seq | 124.6 MB |
| D12_S20_L001_R1_001.fastq.gz | RNA-Seq | 406.1 MB |
| D12_S20_L001_R1_001.fastq.gz | RNA-Seq | 406.1 MB |
| D12_S20_L001_R1_001.fastq.gz | RNA-Seq | 406.1 MB |
| D12_S20_L001_R1_001.fastq.gz | RNA-Seq | 406.1 MB |
| D1_S11_L001_R1_001.fastq.gz | RNA-Seq | 253.5 MB |
| D1_S11_L001_R1_001.fastq.gz | RNA-Seq | 253.5 MB |
| D1_S11_L001_R1_001.fastq.gz | RNA-Seq | 253.5 MB |
| D1_S11_L001_R1_001.fastq.gz | RNA-Seq | 253.5 MB |
| D2_S12_L001_R1_001.fastq.gz | RNA-Seq | 270.0 MB |
| D2_S12_L001_R1_001.fastq.gz | RNA-Seq | 270.0 MB |
| D2_S12_L001_R1_001.fastq.gz | RNA-Seq | 270.0 MB |
| D2_S12_L001_R1_001.fastq.gz | RNA-Seq | 270.0 MB |
| D3_S13_L001_R1_001.fastq.gz | RNA-Seq | 243.5 MB |
| D3_S13_L001_R1_001.fastq.gz | RNA-Seq | 243.5 MB |
| D3_S13_L001_R1_001.fastq.gz | RNA-Seq | 243.5 MB |
| D3_S13_L001_R1_001.fastq.gz | RNA-Seq | 243.5 MB |
| D4_S14_L001_R1_001.fastq.gz | RNA-Seq | 314.6 MB |
| D4_S14_L001_R1_001.fastq.gz | RNA-Seq | 314.6 MB |
| D4_S14_L001_R1_001.fastq.gz | RNA-Seq | 314.6 MB |
| D4_S14_L001_R1_001.fastq.gz | RNA-Seq | 314.6 MB |
| D5_S15_L001_R1_001.fastq.gz | RNA-Seq | 269.5 MB |
| D5_S15_L001_R1_001.fastq.gz | RNA-Seq | 269.5 MB |
| D5_S15_L001_R1_001.fastq.gz | RNA-Seq | 269.5 MB |
| D5_S15_L001_R1_001.fastq.gz | RNA-Seq | 269.5 MB |
| D8_S16_L001_R1_001.fastq.gz | RNA-Seq | 280.6 MB |
| D8_S16_L001_R1_001.fastq.gz | RNA-Seq | 280.6 MB |
| D8_S16_L001_R1_001.fastq.gz | RNA-Seq | 280.6 MB |
| D8_S16_L001_R1_001.fastq.gz | RNA-Seq | 280.6 MB |
| D9_S17_L001_R1_001.fastq.gz | RNA-Seq | 235.0 MB |
| D9_S17_L001_R1_001.fastq.gz | RNA-Seq | 235.0 MB |
| D9_S17_L001_R1_001.fastq.gz | RNA-Seq | 235.0 MB |
| D9_S17_L001_R1_001.fastq.gz | RNA-Seq | 235.0 MB |
| H1_S21_L001_R1_001.fastq.gz | RNA-Seq | 300.6 MB |
| H1_S21_L001_R1_001.fastq.gz | RNA-Seq | 300.6 MB |
| H1_S21_L001_R1_001.fastq.gz | RNA-Seq | 300.6 MB |
| H1_S21_L001_R1_001.fastq.gz | RNA-Seq | 300.6 MB |
| H2_S22_L001_R1_001.fastq.gz | RNA-Seq | 118.0 MB |
| H2_S22_L001_R1_001.fastq.gz | RNA-Seq | 118.0 MB |
| H2_S22_L001_R1_001.fastq.gz | RNA-Seq | 118.0 MB |
| H2_S22_L001_R1_001.fastq.gz | RNA-Seq | 118.0 MB |
Expanded repertoire of RNA-editing-based detection for RNA binding protein interactions (2)
Homo sapiens120 data files
| File | Type | Size |
|---|---|---|
| A1_S1_L001_R1_001.fastq.gz | RNA-Seq | 1.3 GB |
| A1_S1_L001_R1_001.fastq.gz | RNA-Seq | 1.3 GB |
| A1_S1_L001_R1_001.fastq.gz | RNA-Seq | 1.3 GB |
| A1_S1_L001_R1_001.fastq.gz | RNA-Seq | 1.3 GB |
| A2_S4_L001_R1_001.fastq.gz | RNA-Seq | 1.1 GB |
| A2_S4_L001_R1_001.fastq.gz | RNA-Seq | 1.1 GB |
| A2_S4_L001_R1_001.fastq.gz | RNA-Seq | 1.1 GB |
| A2_S4_L001_R1_001.fastq.gz | RNA-Seq | 1.1 GB |
| A3_S8_L001_R1_001.fastq.gz | RNA-Seq | 1.6 GB |
| A3_S8_L001_R1_001.fastq.gz | RNA-Seq | 1.6 GB |
| A3_S8_L001_R1_001.fastq.gz | RNA-Seq | 1.6 GB |
| A3_S8_L001_R1_001.fastq.gz | RNA-Seq | 1.6 GB |
| A4_S1_L001_R1_001.fastq.gz | RNA-Seq | 1.7 GB |
| A4_S1_L001_R1_001.fastq.gz | RNA-Seq | 1.7 GB |
| A4_S1_L001_R1_001.fastq.gz | RNA-Seq | 1.7 GB |
| A4_S1_L001_R1_001.fastq.gz | RNA-Seq | 1.7 GB |
| B1_S2_L001_R1_001.fastq.gz | RNA-Seq | 1.4 GB |
| B1_S2_L001_R1_001.fastq.gz | RNA-Seq | 1.4 GB |
| B1_S2_L001_R1_001.fastq.gz | RNA-Seq | 1.4 GB |
| B1_S2_L001_R1_001.fastq.gz | RNA-Seq | 1.4 GB |
| B2_S6_L001_R1_001.fastq.gz | RNA-Seq | 1.6 GB |
| B2_S6_L001_R1_001.fastq.gz | RNA-Seq | 1.6 GB |
| B2_S6_L001_R1_001.fastq.gz | RNA-Seq | 1.6 GB |
| B2_S6_L001_R1_001.fastq.gz | RNA-Seq | 1.6 GB |
| B3_S9_L001_R1_001.fastq.gz | RNA-Seq | 1.9 GB |
| B3_S9_L001_R1_001.fastq.gz | RNA-Seq | 1.9 GB |
| B3_S9_L001_R1_001.fastq.gz | RNA-Seq | 1.9 GB |
| B3_S9_L001_R1_001.fastq.gz | RNA-Seq | 1.9 GB |
| B4_S2_L001_R1_001.fastq.gz | RNA-Seq | 1.2 GB |
| B4_S2_L001_R1_001.fastq.gz | RNA-Seq | 1.2 GB |
| B4_S2_L001_R1_001.fastq.gz | RNA-Seq | 1.2 GB |
| B4_S2_L001_R1_001.fastq.gz | RNA-Seq | 1.2 GB |
| B5_S5_L001_R1_001.fastq.gz | RNA-Seq | 1.1 GB |
| B5_S5_L001_R1_001.fastq.gz | RNA-Seq | 1.1 GB |
| B5_S5_L001_R1_001.fastq.gz | RNA-Seq | 1.1 GB |
| B5_S5_L001_R1_001.fastq.gz | RNA-Seq | 1.1 GB |
| B6_S19_L002_R1_001.fastq.gz | RNA-Seq | 1.7 GB |
| B6_S19_L002_R1_001.fastq.gz | RNA-Seq | 1.7 GB |
| B6_S19_L002_R1_001.fastq.gz | RNA-Seq | 1.7 GB |
| B6_S19_L002_R1_001.fastq.gz | RNA-Seq | 1.7 GB |
| B7_S12_L002_R1_001.fastq.gz | RNA-Seq | 1.5 GB |
| B7_S12_L002_R1_001.fastq.gz | RNA-Seq | 1.5 GB |
| B7_S12_L002_R1_001.fastq.gz | RNA-Seq | 1.5 GB |
| B7_S12_L002_R1_001.fastq.gz | RNA-Seq | 1.5 GB |
| B8_S15_L002_R1_001.fastq.gz | RNA-Seq | 1.6 GB |
| B8_S15_L002_R1_001.fastq.gz | RNA-Seq | 1.6 GB |
| B8_S15_L002_R1_001.fastq.gz | RNA-Seq | 1.6 GB |
| B8_S15_L002_R1_001.fastq.gz | RNA-Seq | 1.6 GB |
| C1_S3_L001_R1_001.fastq.gz | RNA-Seq | 1.2 GB |
| C1_S3_L001_R1_001.fastq.gz | RNA-Seq | 1.2 GB |
| C1_S3_L001_R1_001.fastq.gz | RNA-Seq | 1.2 GB |
| C1_S3_L001_R1_001.fastq.gz | RNA-Seq | 1.2 GB |
| C2_S7_L001_R1_001.fastq.gz | RNA-Seq | 1.4 GB |
| C2_S7_L001_R1_001.fastq.gz | RNA-Seq | 1.4 GB |
| C2_S7_L001_R1_001.fastq.gz | RNA-Seq | 1.4 GB |
| C2_S7_L001_R1_001.fastq.gz | RNA-Seq | 1.4 GB |
| C3_S10_L001_R1_001.fastq.gz | RNA-Seq | 1.8 GB |
| C3_S10_L001_R1_001.fastq.gz | RNA-Seq | 1.8 GB |
| C3_S10_L001_R1_001.fastq.gz | RNA-Seq | 1.8 GB |
| C3_S10_L001_R1_001.fastq.gz | RNA-Seq | 1.8 GB |
| C4_S13_L002_R1_001.fastq.gz | RNA-Seq | 1.4 GB |
| C4_S13_L002_R1_001.fastq.gz | RNA-Seq | 1.4 GB |
| C4_S13_L002_R1_001.fastq.gz | RNA-Seq | 1.4 GB |
| C4_S13_L002_R1_001.fastq.gz | RNA-Seq | 1.4 GB |
| HM-OT-10_S10_L001_R1_001.fastq.gz | RNA-Seq | 813.2 MB |
| HM-OT-10_S10_L001_R1_001.fastq.gz | RNA-Seq | 813.2 MB |
| HM-OT-10_S10_L001_R1_001.fastq.gz | RNA-Seq | 813.2 MB |
| HM-OT-10_S10_L001_R1_001.fastq.gz | RNA-Seq | 813.2 MB |
| HM-OT-11_S11_L001_R1_001.fastq.gz | RNA-Seq | 508.4 MB |
| HM-OT-11_S11_L001_R1_001.fastq.gz | RNA-Seq | 508.4 MB |
| HM-OT-11_S11_L001_R1_001.fastq.gz | RNA-Seq | 508.4 MB |
| HM-OT-11_S11_L001_R1_001.fastq.gz | RNA-Seq | 508.4 MB |
| HM-OT-12_S12_L001_R1_001.fastq.gz | RNA-Seq | 563.3 MB |
| HM-OT-12_S12_L001_R1_001.fastq.gz | RNA-Seq | 563.3 MB |
| HM-OT-12_S12_L001_R1_001.fastq.gz | RNA-Seq | 563.3 MB |
| HM-OT-12_S12_L001_R1_001.fastq.gz | RNA-Seq | 563.3 MB |
| HM-OT-13_S13_L001_R1_001.fastq.gz | RNA-Seq | 724.0 MB |
| HM-OT-13_S13_L001_R1_001.fastq.gz | RNA-Seq | 724.0 MB |
| HM-OT-13_S13_L001_R1_001.fastq.gz | RNA-Seq | 724.0 MB |
| HM-OT-13_S13_L001_R1_001.fastq.gz | RNA-Seq | 724.0 MB |
| HM-OT-14_S14_L001_R1_001.fastq.gz | RNA-Seq | 568.2 MB |
| HM-OT-14_S14_L001_R1_001.fastq.gz | RNA-Seq | 568.2 MB |
| HM-OT-14_S14_L001_R1_001.fastq.gz | RNA-Seq | 568.2 MB |
| HM-OT-14_S14_L001_R1_001.fastq.gz | RNA-Seq | 568.2 MB |
| HM-OT-1_S1_L001_R1_001.fastq.gz | RNA-Seq | 746.6 MB |
| HM-OT-1_S1_L001_R1_001.fastq.gz | RNA-Seq | 746.6 MB |
| HM-OT-1_S1_L001_R1_001.fastq.gz | RNA-Seq | 746.6 MB |
| HM-OT-1_S1_L001_R1_001.fastq.gz | RNA-Seq | 746.6 MB |
| HM-OT-2_S2_L001_R1_001.fastq.gz | RNA-Seq | 567.3 MB |
| HM-OT-2_S2_L001_R1_001.fastq.gz | RNA-Seq | 567.3 MB |
| HM-OT-2_S2_L001_R1_001.fastq.gz | RNA-Seq | 567.3 MB |
| HM-OT-2_S2_L001_R1_001.fastq.gz | RNA-Seq | 567.3 MB |
| HM-OT-3_S3_L001_R1_001.fastq.gz | RNA-Seq | 450.6 MB |
| HM-OT-3_S3_L001_R1_001.fastq.gz | RNA-Seq | 450.6 MB |
| HM-OT-3_S3_L001_R1_001.fastq.gz | RNA-Seq | 450.6 MB |
| HM-OT-3_S3_L001_R1_001.fastq.gz | RNA-Seq | 450.6 MB |
| HM-OT-4_S4_L001_R1_001.fastq.gz | RNA-Seq | 596.1 MB |
| HM-OT-4_S4_L001_R1_001.fastq.gz | RNA-Seq | 596.1 MB |
| HM-OT-4_S4_L001_R1_001.fastq.gz | RNA-Seq | 596.1 MB |
| HM-OT-4_S4_L001_R1_001.fastq.gz | RNA-Seq | 596.1 MB |
| HM-OT-5_S5_L001_R1_001.fastq.gz | RNA-Seq | 663.2 MB |
| HM-OT-5_S5_L001_R1_001.fastq.gz | RNA-Seq | 663.2 MB |
| HM-OT-5_S5_L001_R1_001.fastq.gz | RNA-Seq | 663.2 MB |
| HM-OT-5_S5_L001_R1_001.fastq.gz | RNA-Seq | 663.2 MB |
| HM-OT-6_S6_L001_R1_001.fastq.gz | RNA-Seq | 681.5 MB |
| HM-OT-6_S6_L001_R1_001.fastq.gz | RNA-Seq | 681.5 MB |
| HM-OT-6_S6_L001_R1_001.fastq.gz | RNA-Seq | 681.5 MB |
| HM-OT-6_S6_L001_R1_001.fastq.gz | RNA-Seq | 681.5 MB |
| HM-OT-7_S7_L001_R1_001.fastq.gz | RNA-Seq | 632.3 MB |
| HM-OT-7_S7_L001_R1_001.fastq.gz | RNA-Seq | 632.3 MB |
| HM-OT-7_S7_L001_R1_001.fastq.gz | RNA-Seq | 632.3 MB |
| HM-OT-7_S7_L001_R1_001.fastq.gz | RNA-Seq | 632.3 MB |
| HM-OT-8_S8_L001_R1_001.fastq.gz | RNA-Seq | 544.0 MB |
| HM-OT-8_S8_L001_R1_001.fastq.gz | RNA-Seq | 544.0 MB |
| HM-OT-8_S8_L001_R1_001.fastq.gz | RNA-Seq | 544.0 MB |
| HM-OT-8_S8_L001_R1_001.fastq.gz | RNA-Seq | 544.0 MB |
| HM-OT-9_S9_L001_R1_001.fastq.gz | RNA-Seq | 715.2 MB |
| HM-OT-9_S9_L001_R1_001.fastq.gz | RNA-Seq | 715.2 MB |
| HM-OT-9_S9_L001_R1_001.fastq.gz | RNA-Seq | 715.2 MB |
| HM-OT-9_S9_L001_R1_001.fastq.gz | RNA-Seq | 715.2 MB |
An in situ method for identification of transcriptome-wide protein-RNA interactions in cells [in_situ_STAMP - Long-Read]"
Homo sapiens4 data files
| File | Type | Size |
|---|---|---|
| m64278e_230504_212705.reads.bam | RNA-Seq | 6.7 GB |
| m64278e_230504_212705.reads.bam | RNA-Seq | 6.7 GB |
| m64278e_230505_212742.reads.bam | RNA-Seq | 7.4 GB |
| m64278e_230505_212742.reads.bam | RNA-Seq | 7.4 GB |
Expanded repertoire of RNA-editing-based detection for RNA binding protein interactions (4)
Homo sapiens96 data files
| File | Type | Size |
|---|---|---|
| Torin_RS_01_S1_L004_R1_001.fastq.gz | RNA-Seq | 2.0 GB |
| Torin_RS_01_S1_L004_R1_001.fastq.gz | RNA-Seq | 2.0 GB |
| Torin_RS_01_S1_L004_R1_001.fastq.gz | RNA-Seq | 2.0 GB |
| Torin_RS_01_S1_L004_R1_001.fastq.gz | RNA-Seq | 2.0 GB |
| Torin_RS_02_S2_L004_R1_001.fastq.gz | RNA-Seq | 4.8 GB |
| Torin_RS_02_S2_L004_R1_001.fastq.gz | RNA-Seq | 4.8 GB |
| Torin_RS_02_S2_L004_R1_001.fastq.gz | RNA-Seq | 4.8 GB |
| Torin_RS_02_S2_L004_R1_001.fastq.gz | RNA-Seq | 4.8 GB |
| Torin_RS_03_S3_L004_R1_001.fastq.gz | RNA-Seq | 3.4 GB |
| Torin_RS_03_S3_L004_R1_001.fastq.gz | RNA-Seq | 3.4 GB |
| Torin_RS_03_S3_L004_R1_001.fastq.gz | RNA-Seq | 3.4 GB |
| Torin_RS_03_S3_L004_R1_001.fastq.gz | RNA-Seq | 3.4 GB |
| Torin_RS_04_S4_L004_R1_001.fastq.gz | RNA-Seq | 4.2 GB |
| Torin_RS_04_S4_L004_R1_001.fastq.gz | RNA-Seq | 4.2 GB |
| Torin_RS_04_S4_L004_R1_001.fastq.gz | RNA-Seq | 4.2 GB |
| Torin_RS_04_S4_L004_R1_001.fastq.gz | RNA-Seq | 4.2 GB |
| Torin_RS_05_S5_L004_R1_001.fastq.gz | RNA-Seq | 3.9 GB |
| Torin_RS_05_S5_L004_R1_001.fastq.gz | RNA-Seq | 3.9 GB |
| Torin_RS_05_S5_L004_R1_001.fastq.gz | RNA-Seq | 3.9 GB |
| Torin_RS_05_S5_L004_R1_001.fastq.gz | RNA-Seq | 3.9 GB |
| Torin_RS_06_S6_L004_R1_001.fastq.gz | RNA-Seq | 2.9 GB |
| Torin_RS_06_S6_L004_R1_001.fastq.gz | RNA-Seq | 2.9 GB |
| Torin_RS_06_S6_L004_R1_001.fastq.gz | RNA-Seq | 2.9 GB |
| Torin_RS_06_S6_L004_R1_001.fastq.gz | RNA-Seq | 2.9 GB |
| Torin_RS_07_S7_L004_R1_001.fastq.gz | RNA-Seq | 4.3 GB |
| Torin_RS_07_S7_L004_R1_001.fastq.gz | RNA-Seq | 4.3 GB |
| Torin_RS_07_S7_L004_R1_001.fastq.gz | RNA-Seq | 4.3 GB |
| Torin_RS_07_S7_L004_R1_001.fastq.gz | RNA-Seq | 4.3 GB |
| Torin_RS_08_S8_L004_R1_001.fastq.gz | RNA-Seq | 3.4 GB |
| Torin_RS_08_S8_L004_R1_001.fastq.gz | RNA-Seq | 3.4 GB |
| Torin_RS_08_S8_L004_R1_001.fastq.gz | RNA-Seq | 3.4 GB |
| Torin_RS_08_S8_L004_R1_001.fastq.gz | RNA-Seq | 3.4 GB |
| Torin_RS_09_S9_L004_R1_001.fastq.gz | RNA-Seq | 2.9 GB |
| Torin_RS_09_S9_L004_R1_001.fastq.gz | RNA-Seq | 2.9 GB |
| Torin_RS_09_S9_L004_R1_001.fastq.gz | RNA-Seq | 2.9 GB |
| Torin_RS_09_S9_L004_R1_001.fastq.gz | RNA-Seq | 2.9 GB |
| Torin_RS_10_S10_L004_R1_001.fastq.gz | RNA-Seq | 4.2 GB |
| Torin_RS_10_S10_L004_R1_001.fastq.gz | RNA-Seq | 4.2 GB |
| Torin_RS_10_S10_L004_R1_001.fastq.gz | RNA-Seq | 4.2 GB |
| Torin_RS_10_S10_L004_R1_001.fastq.gz | RNA-Seq | 4.2 GB |
| Torin_RS_11_S11_L004_R1_001.fastq.gz | RNA-Seq | 3.1 GB |
| Torin_RS_11_S11_L004_R1_001.fastq.gz | RNA-Seq | 3.1 GB |
| Torin_RS_11_S11_L004_R1_001.fastq.gz | RNA-Seq | 3.1 GB |
| Torin_RS_11_S11_L004_R1_001.fastq.gz | RNA-Seq | 3.1 GB |
| Torin_RS_12_S12_L004_R1_001.fastq.gz | RNA-Seq | 4.5 GB |
| Torin_RS_12_S12_L004_R1_001.fastq.gz | RNA-Seq | 4.5 GB |
| Torin_RS_12_S12_L004_R1_001.fastq.gz | RNA-Seq | 4.5 GB |
| Torin_RS_12_S12_L004_R1_001.fastq.gz | RNA-Seq | 4.5 GB |
| Torin_RS_13_S13_L004_R1_001.fastq.gz | RNA-Seq | 3.0 GB |
| Torin_RS_13_S13_L004_R1_001.fastq.gz | RNA-Seq | 3.0 GB |
| Torin_RS_13_S13_L004_R1_001.fastq.gz | RNA-Seq | 3.0 GB |
| Torin_RS_13_S13_L004_R1_001.fastq.gz | RNA-Seq | 3.0 GB |
| Torin_RS_14_S14_L004_R1_001.fastq.gz | RNA-Seq | 3.6 GB |
| Torin_RS_14_S14_L004_R1_001.fastq.gz | RNA-Seq | 3.6 GB |
| Torin_RS_14_S14_L004_R1_001.fastq.gz | RNA-Seq | 3.6 GB |
| Torin_RS_14_S14_L004_R1_001.fastq.gz | RNA-Seq | 3.6 GB |
| Torin_RS_15_S15_L004_R1_001.fastq.gz | RNA-Seq | 6.1 GB |
| Torin_RS_15_S15_L004_R1_001.fastq.gz | RNA-Seq | 6.1 GB |
| Torin_RS_15_S15_L004_R1_001.fastq.gz | RNA-Seq | 6.1 GB |
| Torin_RS_15_S15_L004_R1_001.fastq.gz | RNA-Seq | 6.1 GB |
| Torin_RS_16_S16_L004_R1_001.fastq.gz | RNA-Seq | 3.2 GB |
| Torin_RS_16_S16_L004_R1_001.fastq.gz | RNA-Seq | 3.2 GB |
| Torin_RS_16_S16_L004_R1_001.fastq.gz | RNA-Seq | 3.2 GB |
| Torin_RS_16_S16_L004_R1_001.fastq.gz | RNA-Seq | 3.2 GB |
| Torin_RS_17_S17_L004_R1_001.fastq.gz | RNA-Seq | 3.2 GB |
| Torin_RS_17_S17_L004_R1_001.fastq.gz | RNA-Seq | 3.2 GB |
| Torin_RS_17_S17_L004_R1_001.fastq.gz | RNA-Seq | 3.2 GB |
| Torin_RS_17_S17_L004_R1_001.fastq.gz | RNA-Seq | 3.2 GB |
| Torin_RS_18_S18_L004_R1_001.fastq.gz | RNA-Seq | 6.5 GB |
| Torin_RS_18_S18_L004_R1_001.fastq.gz | RNA-Seq | 6.5 GB |
| Torin_RS_18_S18_L004_R1_001.fastq.gz | RNA-Seq | 6.5 GB |
| Torin_RS_18_S18_L004_R1_001.fastq.gz | RNA-Seq | 6.5 GB |
| Torin_RS_19_S19_L004_R1_001.fastq.gz | RNA-Seq | 6.1 GB |
| Torin_RS_19_S19_L004_R1_001.fastq.gz | RNA-Seq | 6.1 GB |
| Torin_RS_19_S19_L004_R1_001.fastq.gz | RNA-Seq | 6.1 GB |
| Torin_RS_19_S19_L004_R1_001.fastq.gz | RNA-Seq | 6.1 GB |
| Torin_RS_20_S20_L004_R1_001.fastq.gz | RNA-Seq | 5.1 GB |
| Torin_RS_20_S20_L004_R1_001.fastq.gz | RNA-Seq | 5.1 GB |
| Torin_RS_20_S20_L004_R1_001.fastq.gz | RNA-Seq | 5.1 GB |
| Torin_RS_20_S20_L004_R1_001.fastq.gz | RNA-Seq | 5.1 GB |
| Torin_RS_21_S21_L004_R1_001.fastq.gz | RNA-Seq | 3.6 GB |
| Torin_RS_21_S21_L004_R1_001.fastq.gz | RNA-Seq | 3.6 GB |
| Torin_RS_21_S21_L004_R1_001.fastq.gz | RNA-Seq | 3.6 GB |
| Torin_RS_21_S21_L004_R1_001.fastq.gz | RNA-Seq | 3.6 GB |
| Torin_RS_22_S22_L004_R1_001.fastq.gz | RNA-Seq | 6.7 GB |
| Torin_RS_22_S22_L004_R1_001.fastq.gz | RNA-Seq | 6.7 GB |
| Torin_RS_22_S22_L004_R1_001.fastq.gz | RNA-Seq | 6.7 GB |
| Torin_RS_22_S22_L004_R1_001.fastq.gz | RNA-Seq | 6.7 GB |
| Torin_RS_23_S23_L004_R1_001.fastq.gz | RNA-Seq | 3.2 GB |
| Torin_RS_23_S23_L004_R1_001.fastq.gz | RNA-Seq | 3.2 GB |
| Torin_RS_23_S23_L004_R1_001.fastq.gz | RNA-Seq | 3.2 GB |
| Torin_RS_23_S23_L004_R1_001.fastq.gz | RNA-Seq | 3.2 GB |
| Torin_RS_24_S24_L004_R1_001.fastq.gz | RNA-Seq | 1.8 GB |
| Torin_RS_24_S24_L004_R1_001.fastq.gz | RNA-Seq | 1.8 GB |
| Torin_RS_24_S24_L004_R1_001.fastq.gz | RNA-Seq | 1.8 GB |
| Torin_RS_24_S24_L004_R1_001.fastq.gz | RNA-Seq | 1.8 GB |
An in situ method for identification of transcriptome-wide protein-RNA interactions in cells [isstamp_lr]
Homo sapiens12 data files
| File | Type | Size |
|---|---|---|
| APOBEC1_rep2.aligned.bam | OTHER | 916.8 MB |
| APOBEC1_rep2.aligned.bam | OTHER | 916.8 MB |
| APOBEC1_rep3.aligned.bam | OTHER | 1.4 GB |
| APOBEC1_rep3.aligned.bam | OTHER | 1.4 GB |
| BUFFER_rep1.aligned.bam | OTHER | 1.4 GB |
| BUFFER_rep1.aligned.bam | OTHER | 1.4 GB |
| BUFFER_rep2.aligned.bam | OTHER | 1.4 GB |
| BUFFER_rep2.aligned.bam | OTHER | 1.4 GB |
| RBFOX2_rep1.aligned.bam | OTHER | 1.4 GB |
| RBFOX2_rep1.aligned.bam | OTHER | 1.4 GB |
| RBFOX2_rep2.aligned.bam | OTHER | 1.5 GB |
| RBFOX2_rep2.aligned.bam | OTHER | 1.5 GB |
An in situ method for identification of transcriptome-wide protein-RNA interactions in cells [in_situ_STAMP II]
Homo sapiens28 data files
| File | Type | Size |
|---|---|---|
| 100pg_19_S8_L001_R1_001.fastq.gz | RNA-Seq | 1.7 GB |
| 100pg_19_S8_L001_R1_001.fastq.gz | RNA-Seq | 1.7 GB |
| 100pg_20_S9_L001_R1_001.fastq.gz | RNA-Seq | 1.8 GB |
| 100pg_20_S9_L001_R1_001.fastq.gz | RNA-Seq | 1.8 GB |
| 100pg_21_S10_L001_R1_001.fastq.gz | RNA-Seq | 1.9 GB |
| 100pg_21_S10_L001_R1_001.fastq.gz | RNA-Seq | 1.9 GB |
| 100pg_33_S11_L001_R1_001.fastq.gz | RNA-Seq | 1.8 GB |
| 100pg_33_S11_L001_R1_001.fastq.gz | RNA-Seq | 1.8 GB |
| 100pg_34_S12_L001_R1_001.fastq.gz | RNA-Seq | 1.9 GB |
| 100pg_34_S12_L001_R1_001.fastq.gz | RNA-Seq | 1.9 GB |
| 100pg_35_S13_L001_R1_001.fastq.gz | RNA-Seq | 1.8 GB |
| 100pg_35_S13_L001_R1_001.fastq.gz | RNA-Seq | 1.8 GB |
| 100pg_36_S14_L001_R1_001.fastq.gz | RNA-Seq | 1.6 GB |
| 100pg_36_S14_L001_R1_001.fastq.gz | RNA-Seq | 1.6 GB |
| 1ng_19_S1_L001_R1_001.fastq.gz | RNA-Seq | 1.8 GB |
| 1ng_19_S1_L001_R1_001.fastq.gz | RNA-Seq | 1.8 GB |
| 1ng_20_S2_L001_R1_001.fastq.gz | RNA-Seq | 1.8 GB |
| 1ng_20_S2_L001_R1_001.fastq.gz | RNA-Seq | 1.8 GB |
| 1ng_21_S3_L001_R1_001.fastq.gz | RNA-Seq | 1.9 GB |
| 1ng_33_S4_L001_R1_001.fastq.gz | RNA-Seq | 2.0 GB |
| 1ng_33_S4_L001_R1_001.fastq.gz | RNA-Seq | 2.0 GB |
| 1ng_34_S5_L001_R1_001.fastq.gz | RNA-Seq | 1.8 GB |
| 1ng_34_S5_L001_R1_001.fastq.gz | RNA-Seq | 1.8 GB |
| 1ng_35_S6_L001_R1_001.fastq.gz | RNA-Seq | 2.0 GB |
| 1ng_35_S6_L001_R1_001.fastq.gz | RNA-Seq | 2.0 GB |
| 1ng_36_S7_L001_R1_001.fastq.gz | RNA-Seq | 2.0 GB |
| 1ng_36_S7_L001_R1_001.fastq.gz | RNA-Seq | 2.0 GB |
| SRR26918586.lite | RNA-Seq | 1.9 GB |
Expanded repertoire of RNA-editing-based detection for RNA binding protein interactions (5)
Homo sapiens144 data files
| File | Type | Size |
|---|---|---|
| 10_S10_L001_R1_001.fastq.gz | RNA-Seq | 15.7 MB |
| 10_S10_L001_R1_001.fastq.gz | RNA-Seq | 15.7 MB |
| 10_S10_L001_R1_001.fastq.gz | RNA-Seq | 15.7 MB |
| 10_S10_L001_R1_001.fastq.gz | RNA-Seq | 15.7 MB |
| 11_S11_L001_R1_001.fastq.gz | RNA-Seq | 9.7 MB |
| 11_S11_L001_R1_001.fastq.gz | RNA-Seq | 9.7 MB |
| 11_S11_L001_R1_001.fastq.gz | RNA-Seq | 9.7 MB |
| 11_S11_L001_R1_001.fastq.gz | RNA-Seq | 9.7 MB |
| 12_S12_L001_R1_001.fastq.gz | RNA-Seq | 12.0 MB |
| 12_S12_L001_R1_001.fastq.gz | RNA-Seq | 12.0 MB |
| 12_S12_L001_R1_001.fastq.gz | RNA-Seq | 12.0 MB |
| 12_S12_L001_R1_001.fastq.gz | RNA-Seq | 12.0 MB |
| 13_S13_L001_R1_001.fastq.gz | RNA-Seq | 15.1 MB |
| 13_S13_L001_R1_001.fastq.gz | RNA-Seq | 15.1 MB |
| 13_S13_L001_R1_001.fastq.gz | RNA-Seq | 15.1 MB |
| 13_S13_L001_R1_001.fastq.gz | RNA-Seq | 15.1 MB |
| 14_S14_L001_R1_001.fastq.gz | RNA-Seq | 12.2 MB |
| 14_S14_L001_R1_001.fastq.gz | RNA-Seq | 12.2 MB |
| 14_S14_L001_R1_001.fastq.gz | RNA-Seq | 12.2 MB |
| 14_S14_L001_R1_001.fastq.gz | RNA-Seq | 12.2 MB |
| 15_S15_L001_R1_001.fastq.gz | RNA-Seq | 12.8 MB |
| 15_S15_L001_R1_001.fastq.gz | RNA-Seq | 12.8 MB |
| 15_S15_L001_R1_001.fastq.gz | RNA-Seq | 12.8 MB |
| 15_S15_L001_R1_001.fastq.gz | RNA-Seq | 12.8 MB |
| 16_S16_L001_R1_001.fastq.gz | RNA-Seq | 13.9 MB |
| 16_S16_L001_R1_001.fastq.gz | RNA-Seq | 13.9 MB |
| 16_S16_L001_R1_001.fastq.gz | RNA-Seq | 13.9 MB |
| 16_S16_L001_R1_001.fastq.gz | RNA-Seq | 13.9 MB |
| 17_S17_L001_R1_001.fastq.gz | RNA-Seq | 12.4 MB |
| 17_S17_L001_R1_001.fastq.gz | RNA-Seq | 12.4 MB |
| 17_S17_L001_R1_001.fastq.gz | RNA-Seq | 12.4 MB |
| 17_S17_L001_R1_001.fastq.gz | RNA-Seq | 12.4 MB |
| 18_S18_L001_R1_001.fastq.gz | RNA-Seq | 9.8 MB |
| 18_S18_L001_R1_001.fastq.gz | RNA-Seq | 9.8 MB |
| 18_S18_L001_R1_001.fastq.gz | RNA-Seq | 9.8 MB |
| 18_S18_L001_R1_001.fastq.gz | RNA-Seq | 9.8 MB |
| 19_S19_L001_R1_001.fastq.gz | RNA-Seq | 14.2 MB |
| 19_S19_L001_R1_001.fastq.gz | RNA-Seq | 14.2 MB |
| 19_S19_L001_R1_001.fastq.gz | RNA-Seq | 14.2 MB |
| 19_S19_L001_R1_001.fastq.gz | RNA-Seq | 14.2 MB |
| 1_S1_L001_R1_001.fastq.gz | RNA-Seq | 15.8 MB |
| 1_S1_L001_R1_001.fastq.gz | RNA-Seq | 15.8 MB |
| 1_S1_L001_R1_001.fastq.gz | RNA-Seq | 15.8 MB |
| 1_S1_L001_R1_001.fastq.gz | RNA-Seq | 15.8 MB |
| 20_S20_L001_R1_001.fastq.gz | RNA-Seq | 14.9 MB |
| 20_S20_L001_R1_001.fastq.gz | RNA-Seq | 14.9 MB |
| 20_S20_L001_R1_001.fastq.gz | RNA-Seq | 14.9 MB |
| 20_S20_L001_R1_001.fastq.gz | RNA-Seq | 14.9 MB |
| 21_S21_L001_R1_001.fastq.gz | RNA-Seq | 8.8 MB |
| 21_S21_L001_R1_001.fastq.gz | RNA-Seq | 8.8 MB |
| 21_S21_L001_R1_001.fastq.gz | RNA-Seq | 8.8 MB |
| 21_S21_L001_R1_001.fastq.gz | RNA-Seq | 8.8 MB |
| 22_S22_L001_R1_001.fastq.gz | RNA-Seq | 7.9 MB |
| 22_S22_L001_R1_001.fastq.gz | RNA-Seq | 7.9 MB |
| 22_S22_L001_R1_001.fastq.gz | RNA-Seq | 7.9 MB |
| 22_S22_L001_R1_001.fastq.gz | RNA-Seq | 7.9 MB |
| 23_S23_L001_R1_001.fastq.gz | RNA-Seq | 11.1 MB |
| 23_S23_L001_R1_001.fastq.gz | RNA-Seq | 11.1 MB |
| 23_S23_L001_R1_001.fastq.gz | RNA-Seq | 11.1 MB |
| 23_S23_L001_R1_001.fastq.gz | RNA-Seq | 11.1 MB |
| 24_S24_L001_R1_001.fastq.gz | RNA-Seq | 9.7 MB |
| 24_S24_L001_R1_001.fastq.gz | RNA-Seq | 9.7 MB |
| 24_S24_L001_R1_001.fastq.gz | RNA-Seq | 9.7 MB |
| 24_S24_L001_R1_001.fastq.gz | RNA-Seq | 9.7 MB |
| 2_S2_L001_R1_001.fastq.gz | RNA-Seq | 15.8 MB |
| 2_S2_L001_R1_001.fastq.gz | RNA-Seq | 15.8 MB |
| 2_S2_L001_R1_001.fastq.gz | RNA-Seq | 15.8 MB |
| 2_S2_L001_R1_001.fastq.gz | RNA-Seq | 15.8 MB |
| 3_S3_L001_R1_001.fastq.gz | RNA-Seq | 13.6 MB |
| 3_S3_L001_R1_001.fastq.gz | RNA-Seq | 13.6 MB |
| 3_S3_L001_R1_001.fastq.gz | RNA-Seq | 13.6 MB |
| 3_S3_L001_R1_001.fastq.gz | RNA-Seq | 13.6 MB |
| 40_S40_L001_R1_001.fastq.gz | RNA-Seq | 19.7 MB |
| 40_S40_L001_R1_001.fastq.gz | RNA-Seq | 19.7 MB |
| 40_S40_L001_R1_001.fastq.gz | RNA-Seq | 19.7 MB |
| 40_S40_L001_R1_001.fastq.gz | RNA-Seq | 19.7 MB |
| 41_S41_L001_R1_001.fastq.gz | RNA-Seq | 18.2 MB |
| 41_S41_L001_R1_001.fastq.gz | RNA-Seq | 18.2 MB |
| 41_S41_L001_R1_001.fastq.gz | RNA-Seq | 18.2 MB |
| 41_S41_L001_R1_001.fastq.gz | RNA-Seq | 18.2 MB |
| 42_S42_L001_R1_001.fastq.gz | RNA-Seq | 17.6 MB |
| 42_S42_L001_R1_001.fastq.gz | RNA-Seq | 17.6 MB |
| 42_S42_L001_R1_001.fastq.gz | RNA-Seq | 17.6 MB |
| 42_S42_L001_R1_001.fastq.gz | RNA-Seq | 17.6 MB |
| 43_S43_L001_R1_001.fastq.gz | RNA-Seq | 18.9 MB |
| 43_S43_L001_R1_001.fastq.gz | RNA-Seq | 18.9 MB |
| 43_S43_L001_R1_001.fastq.gz | RNA-Seq | 18.9 MB |
| 43_S43_L001_R1_001.fastq.gz | RNA-Seq | 18.9 MB |
| 44_S44_L001_R1_001.fastq.gz | RNA-Seq | 17.4 MB |
| 44_S44_L001_R1_001.fastq.gz | RNA-Seq | 17.4 MB |
| 44_S44_L001_R1_001.fastq.gz | RNA-Seq | 17.4 MB |
| 44_S44_L001_R1_001.fastq.gz | RNA-Seq | 17.4 MB |
| 45_S45_L001_R1_001.fastq.gz | RNA-Seq | 17.6 MB |
| 45_S45_L001_R1_001.fastq.gz | RNA-Seq | 17.6 MB |
| 45_S45_L001_R1_001.fastq.gz | RNA-Seq | 17.6 MB |
| 45_S45_L001_R1_001.fastq.gz | RNA-Seq | 17.6 MB |
| 46_S46_L001_R1_001.fastq.gz | RNA-Seq | 17.4 MB |
| 46_S46_L001_R1_001.fastq.gz | RNA-Seq | 17.4 MB |
| 46_S46_L001_R1_001.fastq.gz | RNA-Seq | 17.4 MB |
| 46_S46_L001_R1_001.fastq.gz | RNA-Seq | 17.4 MB |
| 47_S47_L001_R1_001.fastq.gz | RNA-Seq | 21.0 MB |
| 47_S47_L001_R1_001.fastq.gz | RNA-Seq | 21.0 MB |
| 47_S47_L001_R1_001.fastq.gz | RNA-Seq | 21.0 MB |
| 47_S47_L001_R1_001.fastq.gz | RNA-Seq | 21.0 MB |
| 48_S48_L001_R1_001.fastq.gz | RNA-Seq | 19.4 MB |
| 48_S48_L001_R1_001.fastq.gz | RNA-Seq | 19.4 MB |
| 48_S48_L001_R1_001.fastq.gz | RNA-Seq | 19.4 MB |
| 48_S48_L001_R1_001.fastq.gz | RNA-Seq | 19.4 MB |
| 49_S49_L001_R1_001.fastq.gz | RNA-Seq | 17.6 MB |
| 49_S49_L001_R1_001.fastq.gz | RNA-Seq | 17.6 MB |
| 49_S49_L001_R1_001.fastq.gz | RNA-Seq | 17.6 MB |
| 49_S49_L001_R1_001.fastq.gz | RNA-Seq | 17.6 MB |
| 4_S4_L001_R1_001.fastq.gz | RNA-Seq | 18.2 MB |
| 4_S4_L001_R1_001.fastq.gz | RNA-Seq | 18.2 MB |
| 4_S4_L001_R1_001.fastq.gz | RNA-Seq | 18.2 MB |
| 4_S4_L001_R1_001.fastq.gz | RNA-Seq | 18.2 MB |
| 50_S50_L001_R1_001.fastq.gz | RNA-Seq | 18.4 MB |
| 50_S50_L001_R1_001.fastq.gz | RNA-Seq | 18.4 MB |
| 50_S50_L001_R1_001.fastq.gz | RNA-Seq | 18.4 MB |
| 50_S50_L001_R1_001.fastq.gz | RNA-Seq | 18.4 MB |
| 51_S51_L001_R1_001.fastq.gz | RNA-Seq | 19.7 MB |
| 51_S51_L001_R1_001.fastq.gz | RNA-Seq | 19.7 MB |
| 51_S51_L001_R1_001.fastq.gz | RNA-Seq | 19.7 MB |
| 51_S51_L001_R1_001.fastq.gz | RNA-Seq | 19.7 MB |
| 5_S5_L001_R1_001.fastq.gz | RNA-Seq | 10.9 MB |
| 5_S5_L001_R1_001.fastq.gz | RNA-Seq | 10.9 MB |
| 5_S5_L001_R1_001.fastq.gz | RNA-Seq | 10.9 MB |
| 5_S5_L001_R1_001.fastq.gz | RNA-Seq | 10.9 MB |
| 6_S6_L001_R1_001.fastq.gz | RNA-Seq | 14.1 MB |
| 6_S6_L001_R1_001.fastq.gz | RNA-Seq | 14.1 MB |
| 6_S6_L001_R1_001.fastq.gz | RNA-Seq | 14.1 MB |
| 6_S6_L001_R1_001.fastq.gz | RNA-Seq | 14.1 MB |
| 7_S7_L001_R1_001.fastq.gz | RNA-Seq | 14.4 MB |
| 7_S7_L001_R1_001.fastq.gz | RNA-Seq | 14.4 MB |
| 7_S7_L001_R1_001.fastq.gz | RNA-Seq | 14.4 MB |
| 7_S7_L001_R1_001.fastq.gz | RNA-Seq | 14.4 MB |
| 8_S8_L001_R1_001.fastq.gz | RNA-Seq | 15.7 MB |
| 8_S8_L001_R1_001.fastq.gz | RNA-Seq | 15.7 MB |
| 8_S8_L001_R1_001.fastq.gz | RNA-Seq | 15.7 MB |
| 8_S8_L001_R1_001.fastq.gz | RNA-Seq | 15.7 MB |
| 9_S9_L001_R1_001.fastq.gz | RNA-Seq | 15.4 MB |
| 9_S9_L001_R1_001.fastq.gz | RNA-Seq | 15.4 MB |
| 9_S9_L001_R1_001.fastq.gz | RNA-Seq | 15.4 MB |
| 9_S9_L001_R1_001.fastq.gz | RNA-Seq | 15.4 MB |
Expanded palette of RNA base editors for comprehensive RBP-RNA interactome studies
Homo sapiensAn in situ method for identification of transcriptome-wide protein-RNA interactions in cells
Mus musculusAn in situ method for identification of transcriptome-wide protein-RNA interactions in cells [in_situ_STAMP]
Mus musculus52 data files
| File | Type | Size |
|---|---|---|
| isSTAMP08_09_S9_L002_R1_001.fastq.gz | RNA-Seq | 1.4 GB |
| isSTAMP08_10_S10_L002_R1_001.fastq.gz | RNA-Seq | 1.4 GB |
| isSTAMP08_11_S11_L002_R1_001.fastq.gz | RNA-Seq | 1.6 GB |
| isSTAMP08_12_S12_L002_R1_001.fastq.gz | RNA-Seq | 1.5 GB |
| isSTAMP08_13_S13_L002_R1_001.fastq.gz | RNA-Seq | 1.7 GB |
| isSTAMP08_14_S14_L002_R1_001.fastq.gz | RNA-Seq | 1.5 GB |
| isSTAMP10_01_S1_L004_R1_001.fastq.gz | RNA-Seq | 1.7 GB |
| isSTAMP10_02_S2_L004_R1_001.fastq.gz | RNA-Seq | 1.7 GB |
| isSTAMP10_03_S3_L004_R1_001.fastq.gz | RNA-Seq | 2.0 GB |
| isSTAMP10_08_S8_L004_R1_001.fastq.gz | RNA-Seq | 1.6 GB |
| isSTAMP10_09_S9_L004_R1_001.fastq.gz | RNA-Seq | 2.0 GB |
| isSTAMP10_13_S13_L004_R1_001.fastq.gz | RNA-Seq | 1.6 GB |
| isSTAMP10_14_S14_L004_R1_001.fastq.gz | RNA-Seq | 1.7 GB |
| isSTAMP10_15_S15_L004_R1_001.fastq.gz | RNA-Seq | 1.3 GB |
| isSTAMP10_16_S16_L004_R1_001.fastq.gz | RNA-Seq | 1.8 GB |
| isSTAMP10_17_S17_L004_R1_001.fastq.gz | RNA-Seq | 1.5 GB |
| isSTAMP10_18_S18_L004_R1_001.fastq.gz | RNA-Seq | 1.6 GB |
| isSTAMP10_20_S20_L004_R1_001.fastq.gz | RNA-Seq | 3.1 GB |
| isSTAMP10_21_S21_L004_R1_001.fastq.gz | RNA-Seq | 3.2 GB |
| isSTAMP10_25_S25_L004_R1_001.fastq.gz | RNA-Seq | 1.4 GB |
| isSTAMP10_25_S59_L001_R1_001.fastq.gz | RNA-Seq | 317.1 MB |
| isSTAMP10_25_S59_L002_R1_001.fastq.gz | RNA-Seq | 367.0 MB |
| isSTAMP10_26_S26_L004_R1_001.fastq.gz | RNA-Seq | 1.8 GB |
| isSTAMP10_27_S27_L004_R1_001.fastq.gz | RNA-Seq | 1.9 GB |
| isSTAMP10_32_S32_L004_R1_001.fastq.gz | RNA-Seq | 3.1 GB |
| isSTAMP10_33_S33_L004_R1_001.fastq.gz | RNA-Seq | 2.5 GB |
| isSTAMP10_34_S34_L004_R1_001.fastq.gz | RNA-Seq | 3.3 GB |
| isSTAMP10_35_S35_L004_R1_001.fastq.gz | RNA-Seq | 5.3 GB |
| isSTAMP10_36_S36_L004_R1_001.fastq.gz | RNA-Seq | 2.2 GB |
| isSTAMP10_36_S60_L001_R1_001.fastq.gz | RNA-Seq | 266.2 MB |
| isSTAMP10_36_S60_L002_R1_001.fastq.gz | RNA-Seq | 301.9 MB |
| isSTAMP12-01_S1_L001_R1_001.fastq.gz | RNA-Seq | 640.2 MB |
| isSTAMP12-01_S1_L002_R1_001.fastq.gz | RNA-Seq | 634.3 MB |
| isSTAMP12-02_S2_L001_R1_001.fastq.gz | RNA-Seq | 699.3 MB |
| isSTAMP12-02_S2_L002_R1_001.fastq.gz | RNA-Seq | 688.1 MB |
| isSTAMP12-03_S3_L001_R1_001.fastq.gz | RNA-Seq | 587.1 MB |
| isSTAMP12-03_S3_L002_R1_001.fastq.gz | RNA-Seq | 577.6 MB |
| isSTAMP12-04_S4_L001_R1_001.fastq.gz | RNA-Seq | 549.7 MB |
| isSTAMP12-04_S4_L002_R1_001.fastq.gz | RNA-Seq | 540.0 MB |
| isSTAMP12-05_S5_L001_R1_001.fastq.gz | RNA-Seq | 758.5 MB |
| isSTAMP12-05_S5_L002_R1_001.fastq.gz | RNA-Seq | 750.0 MB |
| isSTAMP12-06_S6_L001_R1_001.fastq.gz | RNA-Seq | 682.2 MB |
| isSTAMP12-06_S6_L002_R1_001.fastq.gz | RNA-Seq | 670.9 MB |
| isSTAMP12-07_S7_L001_R1_001.fastq.gz | RNA-Seq | 1.2 GB |
| isSTAMP12-07_S7_L002_R1_001.fastq.gz | RNA-Seq | 1.2 GB |
| isSTAMP12-08_S8_L001_R1_001.fastq.gz | RNA-Seq | 683.6 MB |
| isSTAMP12-08_S8_L002_R1_001.fastq.gz | RNA-Seq | 672.1 MB |
| isSTAMP12-09_S9_L001_R1_001.fastq.gz | RNA-Seq | 629.1 MB |
| isSTAMP12-09_S9_L002_R1_001.fastq.gz | RNA-Seq | 618.9 MB |
| SRR25508756.lite | RNA-Seq | 2.8 GB |
| SRR25508764.lite | RNA-Seq | 3.7 GB |
| SRR25508773.lite | RNA-Seq | 1.9 GB |
An in situ method for identification of transcriptome-wide protein-RNA interactions in cells [eCLIP-seq ]
Mus musculus2 data files
| File | Type | Size |
|---|---|---|
| YS4_S14_L002_R1_001.fastq.gz | RIP-Seq | 2.0 GB |
| YS6_S2_L001_R1_001.fastq.gz | RIP-Seq | 513.3 MB |
An in situ method for identification of transcriptome-wide protein-RNA interactions in cells [isSTAMP]
Mus musculus15 data files
| File | Type | Size |
|---|---|---|
| isSTAMP08_sd_01_S10_L001_R1_001.fastq.gz | OTHER | 1.6 GB |
| isSTAMP08_sd_02_S11_L001_R1_001.fastq.gz | OTHER | 2.3 GB |
| isSTAMP08_sd_03_S12_L001_R1_001.fastq.gz | OTHER | 2.1 GB |
| isSTAMP08_sd_04_S13_L001_R1_001.fastq.gz | OTHER | 2.0 GB |
| isSTAMP08_sd_05_S14_L001_R1_001.fastq.gz | OTHER | 1.9 GB |
| isSTAMP08_sd_06_S15_L001_R1_001.fastq.gz | OTHER | 2.0 GB |
| isSTAMP15_01_S1_L001_R1_001.fastq.gz | OTHER | 2.9 GB |
| isSTAMP15_02_S2_L001_R1_001.fastq.gz | OTHER | 3.2 GB |
| isSTAMP15_03_S3_L001_R1_001.fastq.gz | OTHER | 2.4 GB |
| isSTAMP15_04_S4_L001_R1_001.fastq.gz | OTHER | 2.4 GB |
| isSTAMP15_05_S5_L001_R1_001.fastq.gz | OTHER | 2.6 GB |
| isSTAMP15_06_S6_L001_R1_001.fastq.gz | OTHER | 2.3 GB |
| isSTAMP15_07_S7_L001_R1_001.fastq.gz | OTHER | 3.2 GB |
| isSTAMP15_08_S8_L001_R1_001.fastq.gz | OTHER | 2.6 GB |
| isSTAMP15_09_S9_L001_R1_001.fastq.gz | OTHER | 2.3 GB |
Potentially Related Datasets (8)
These accessions were text-mined from the PMC full text. They may be referenced for comparison, cited from other studies, or otherwise mentioned without being primary data for this paper.
An in situ method for identification of transcriptome-wide protein-RNA interactions in cells [isSTAMP]
Enhanced CLIP (eCLIP) enables robust and scalable transcriptome-wide discovery and characterization of RNA binding protein binding sites
An in situ method for identification of transcriptome-wide protein-RNA interactions in cells [eCLIP-seq ]
Robust single-cell discovery of RNA targets of RNA binding proteins and ribosomes
An in situ method for identification of transcriptome-wide protein-RNA interactions in cells [in_situ_STAMP]
An in situ method for identification of transcriptome-wide protein-RNA interactions in cells
Analysis Pipelines (8)
GSE240014 Data Processing
6 steps
geo_data_processing
GSE240014
GSE240325 Data Processing
7 steps
geo_data_processing
GSE240325
GSE240326 Data Processing
6 steps
geo_data_processing
GSE240326
GSE240521 eCLIP Data Processing
9 steps
GSE248461 Data Processing
6 steps
geo_data_processing
GSE248461
GSE263371 Data Processing
6 steps
geo_data_processing
GSE263371
GSE263870 Data Processing
9 steps
geo_data_processing
GSE263870