GSE173498

GSE GEO

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Discovery and functional interrogation of the virus and host RNA interactome of SARS-CoV-2 proteins [eCLIP]

Organism: Homo sapiens

Platform: GPL11154

Samples: 147

Experiment Types:

Other

Submitted: Apr 28 2021

Last Updated: Mar 31 2022

Status: Public on Mar 09 2022

Contact: Gene,,Yeo (UCSD)

Relations

SubSeries of: GSE173508 BioProject: https://www.ncbi.nlm.nih.gov/bioproject/PRJNA725841 SRA: https://www.ncbi.nlm.nih.gov/sra?term=SRP316737

Summary

The coronavirus disease 2019 (COVID-19) pandemic was caused by severe acute respiratory syndrome-coronavirus-2 (SARS-CoV-2). Understanding the molecular functions of SARS-CoV-2 proteins is thus imperative to developing effective antiviral treatments. Here, we use enhanced crosslinking and immunoprecipitation to investigate SARS-CoV-2 protein interactions with viral and host RNAs. SARS-CoV-2 proteins, NSP8 and NSP12, are found to specifically bind to untranslated regions of the RNA viral genome, with NSP12 additionally binding to all transcription regulatory sequences. This provides evidence for their central roles in replication and transcription. Moreover, we discovered a potential site of NSP12 mediated genome recombination, which could explain the genetic diversity found in coronaviruses. SARS-CoV-2 proteins exogenously expressed in human lung epithelial cells bind to 4,281 unique host RNAs. Nine SARS-CoV-2 proteins upregulate target gene expression, including NSP12 which upregulates mitochondrial electron transport and N-linked glycosylation proteins. Furthermore, siRNA knockdown of NSP12-targeted proteins in human lung organoid cells demonstrates substantial antiviral effects. Conversely, NSP9 inhibits host gene expression via blocking mRNA export and dampens antiviral inflammation response such as interleukin 1Î± (IL1Î±) production. Our extensive viral protein-RNA interactome provides a catalog of potential therapeutic targets and offers insight into the etiology of COVID-19 as a safeguard against future pandemics.

Overall Design

Crosslinking and immunoprecipitation of SARS-CoV-2 protein bound RNA and sequencing from 2 technical replicates.

Analysis (19 steps)

View Data Processing

Processing steps for GSE173498

Sequenced reads were reformatted to include randomers in read headers with umi_tools (1.0.0).
Args: --random-seed 1 --bc-pattern NNNNNNNNNN
Reads were then trimmed with cutadapt (1.14).
Args: --match-read-wildcards -O 1 --times 1 -e 0.1 --quality-cutoff 6 -m 18 -a InvRNA*.fasta (fasta sequences can be found at: https://github.com/YeoLab/eclip/tree/master/example/inputs/)
Reads were then trimmed once more with cutadapt (1.14) to remove double-ligation events.
Args: --match-read-wildcards -O 5 --times 1 -e 0.1 --quality-cutoff 6 -m 18 -a InvRNA*.fasta (fasta sequences can be found at: https://github.com/YeoLab/eclip/tree/master/example/inputs/)
Trimmed reads were then mapped with STAR (2.4.0i) against a repeat element database (RepBase 18.05).
Args: --runThreadN 16 \ --genomeDir human_repbase \ --readFilesIn path/to/read1 \ --outFileNamePrefix out_prefix \ --outReadsUnmapped Fastx \ --outSAMtype BAM Unsorted \ --outSAMattributes All \ --outSAMunmapped Within \ --outSAMattrRGline ID:foo \ --outFilterType BySJout \ --outFilterMultimapNmax 30 \ --outFilterMultimapScoreRange 1 \ --outFilterScoreMin 10 \ --alignEndsType EndToEnd

Showing first 8 steps.

Supplementary Files (445)

GSE173498_E_reproducible_peaks.bed.gz Download

GSE173498_M_reproducible_peaks.bed.gz Download

GSE173498_NSP1-1.vs.NSP1-2.bed.annotated_proxdist_miRlncRNA.WTfiltered.txt.gz Download

GSE173498_NSP1-1.vs.NSP1-2.bed.gz Download

GSE173498_NSP14-1.vs.NSP14-2.bed.gz Download

GSE173498_NSP16-1.vs.NSP16-2.bed.annotated_proxdist_miRlncRNA.WTfiltered.txt.gz Download

GSE173498_NSP16-1.vs.NSP16-2.bed.gz Download

GSE173498_N_reproducible_peaks.bed.gz Download

GSE173498_ORF10-1.vs.ORF10-2.bed.gz Download

GSE173498_ORF3a_reproducible_peaks.bed.gz Download

GSE173498_ORF6_reproducible_peaks.bed.gz Download

GSE173498_ORF7a_reproducible_peaks.bed.gz Download

GSE173498_SPIKE-1.vs.SPIKE-2.bed.gz Download

GSE173498_WT-high_reproducible_peaks.bed.gz Download

GSE173498_WT-low_reproducible_peaks.bed.gz Download

GSE173498_WTH-1.vs.WTH-2.bed.gz Download

GSE173498_WTL-1.vs.WTL-2.bed.gz Download

GSE173498_eCLIP2.E-1-IN.umi.r1.fq.genome-mappedSoSo.rmDupSo.norm.neg.bw Download

GSE173498_eCLIP2.E-1-IN.umi.r1.fq.genome-mappedSoSo.rmDupSo.norm.pos.bw Download

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GSE173498_eCLIP2.E-1-IP.umi.r1.fq.genome-mappedSoSo.rmDupSo.peakClusters.normed.compressed.bed.gz Download

GSE173498_eCLIP2.E-2-IN.umi.r1.fq.genome-mappedSoSo.rmDupSo.norm.neg.bw Download

GSE173498_eCLIP2.E-2-IN.umi.r1.fq.genome-mappedSoSo.rmDupSo.norm.pos.bw Download

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GSE173498_eCLIP2.E-2-IP.umi.r1.fq.genome-mappedSoSo.rmDupSo.peakClusters.normed.compressed.bed.gz Download

GSE173498_eCLIP2.E.bed.annotated_proxdist_miRlncRNA.WTfiltered.txt.gz Download

GSE173498_eCLIP2.M-1-IN.umi.r1.fq.genome-mappedSoSo.rmDupSo.norm.neg.bw Download

GSE173498_eCLIP2.M-1-IN.umi.r1.fq.genome-mappedSoSo.rmDupSo.norm.pos.bw Download

GSE173498_eCLIP2.M-1-IP.umi.r1.fq.genome-mappedSoSo.rmDupSo.norm.neg.bw Download

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GSE173498_eCLIP2.M-1-IP.umi.r1.fq.genome-mappedSoSo.rmDupSo.peakClusters.normed.compressed.bed.gz Download

GSE173498_eCLIP2.M-2-IN.umi.r1.fq.genome-mappedSoSo.rmDupSo.norm.neg.bw Download

GSE173498_eCLIP2.M-2-IN.umi.r1.fq.genome-mappedSoSo.rmDupSo.norm.pos.bw Download

GSE173498_eCLIP2.M-2-IP.umi.r1.fq.genome-mappedSoSo.rmDupSo.norm.neg.bw Download

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GSE173498_eCLIP2.M-2-IP.umi.r1.fq.genome-mappedSoSo.rmDupSo.peakClusters.normed.compressed.bed.gz Download

GSE173498_eCLIP2.M.bed.annotated_proxdist_miRlncRNA.WTfiltered.txt.gz Download

GSE173498_eCLIP2.N-1-IN.umi.r1.fq.genome-mappedSoSo.rmDupSo.norm.neg.bw Download

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GSE173498_eCLIP2.N-1-IP.umi.r1.fq.genome-mappedSoSo.rmDupSo.peakClusters.normed.compressed.bed.gz Download

GSE173498_eCLIP2.N-2-IN.umi.r1.fq.genome-mappedSoSo.rmDupSo.norm.neg.bw Download

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GSE173498_eCLIP2.N-2-IP.umi.r1.fq.genome-mappedSoSo.rmDupSo.norm.neg.bw Download

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GSE173498_eCLIP2.N-2-IP.umi.r1.fq.genome-mappedSoSo.rmDupSo.peakClusters.normed.compressed.bed.gz Download

GSE173498_eCLIP2.N.bed.annotated_proxdist_miRlncRNA.WTfiltered.txt.gz Download

GSE173498_eCLIP2.ORF3a-1-IN.umi.r1.fq.genome-mappedSoSo.rmDupSo.norm.neg.bw Download

GSE173498_eCLIP2.ORF3a-1-IN.umi.r1.fq.genome-mappedSoSo.rmDupSo.norm.pos.bw Download

GSE173498_eCLIP2.ORF3a-1-IP.umi.r1.fq.genome-mappedSoSo.rmDupSo.norm.neg.bw Download

GSE173498_eCLIP2.ORF3a-1-IP.umi.r1.fq.genome-mappedSoSo.rmDupSo.norm.pos.bw Download

GSE173498_eCLIP2.ORF3a-1-IP.umi.r1.fq.genome-mappedSoSo.rmDupSo.peakClusters.normed.compressed.bed.gz Download

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GSE173498_eCLIP2.ORF3a-2-IP.umi.r1.fq.genome-mappedSoSo.rmDupSo.norm.neg.bw Download

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GSE173498_eCLIP2.ORF3a-2-IP.umi.r1.fq.genome-mappedSoSo.rmDupSo.peakClusters.normed.compressed.bed.gz Download

GSE173498_eCLIP2.ORF3a.bed.annotated_proxdist_miRlncRNA.WTfiltered.txt.gz Download

GSE173498_eCLIP2.ORF6-1-IN.umi.r1.fq.genome-mappedSoSo.rmDupSo.norm.neg.bw Download

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GSE173498_eCLIP2.ORF6-1-IP.umi.r1.fq.genome-mappedSoSo.rmDupSo.peakClusters.normed.compressed.bed.gz Download

GSE173498_eCLIP2.ORF6-2-IN.umi.r1.fq.genome-mappedSoSo.rmDupSo.norm.neg.bw Download

GSE173498_eCLIP2.ORF6-2-IN.umi.r1.fq.genome-mappedSoSo.rmDupSo.norm.pos.bw Download

GSE173498_eCLIP2.ORF6-2-IP.umi.r1.fq.genome-mappedSoSo.rmDupSo.norm.neg.bw Download

GSE173498_eCLIP2.ORF6-2-IP.umi.r1.fq.genome-mappedSoSo.rmDupSo.norm.pos.bw Download

GSE173498_eCLIP2.ORF6-2-IP.umi.r1.fq.genome-mappedSoSo.rmDupSo.peakClusters.normed.compressed.bed.gz Download

GSE173498_eCLIP2.ORF6.bed.annotated_proxdist_miRlncRNA.WTfiltered.txt.gz Download

GSE173498_eCLIP2.ORF7a-1-IN.umi.r1.fq.genome-mappedSoSo.rmDupSo.norm.neg.bw Download

GSE173498_eCLIP2.ORF7a-1-IN.umi.r1.fq.genome-mappedSoSo.rmDupSo.norm.pos.bw Download

GSE173498_eCLIP2.ORF7a-1-IP.umi.r1.fq.genome-mappedSoSo.rmDupSo.norm.neg.bw Download

GSE173498_eCLIP2.ORF7a-1-IP.umi.r1.fq.genome-mappedSoSo.rmDupSo.norm.pos.bw Download

GSE173498_eCLIP2.ORF7a-1-IP.umi.r1.fq.genome-mappedSoSo.rmDupSo.peakClusters.normed.compressed.bed.gz Download

GSE173498_eCLIP2.ORF7a-2-IN.umi.r1.fq.genome-mappedSoSo.rmDupSo.norm.neg.bw Download

GSE173498_eCLIP2.ORF7a-2-IN.umi.r1.fq.genome-mappedSoSo.rmDupSo.norm.pos.bw Download

GSE173498_eCLIP2.ORF7a-2-IP.umi.r1.fq.genome-mappedSoSo.rmDupSo.norm.neg.bw Download

GSE173498_eCLIP2.ORF7a-2-IP.umi.r1.fq.genome-mappedSoSo.rmDupSo.norm.pos.bw Download

GSE173498_eCLIP2.ORF7a-2-IP.umi.r1.fq.genome-mappedSoSo.rmDupSo.peakClusters.normed.compressed.bed.gz Download

GSE173498_eCLIP2.ORF7a.bed.annotated_proxdist_miRlncRNA.WTfiltered.txt.gz Download

GSE173498_eCLIP2.WT-high-1-IN.umi.r1.fq.genome-mappedSoSo.rmDupSo.norm.neg.bw Download

GSE173498_eCLIP2.WT-high-1-IN.umi.r1.fq.genome-mappedSoSo.rmDupSo.norm.pos.bw Download

GSE173498_eCLIP2.WT-high-1-IP.umi.r1.fq.genome-mappedSoSo.rmDupSo.norm.neg.bw Download

GSE173498_eCLIP2.WT-high-1-IP.umi.r1.fq.genome-mappedSoSo.rmDupSo.norm.pos.bw Download

GSE173498_eCLIP2.WT-high-1-IP.umi.r1.fq.genome-mappedSoSo.rmDupSo.peakClusters.normed.compressed.bed.gz Download

GSE173498_eCLIP2.WT-high-2-IN.umi.r1.fq.genome-mappedSoSo.rmDupSo.norm.neg.bw Download

GSE173498_eCLIP2.WT-high-2-IN.umi.r1.fq.genome-mappedSoSo.rmDupSo.norm.pos.bw Download

GSE173498_eCLIP2.WT-high-2-IP.umi.r1.fq.genome-mappedSoSo.rmDupSo.norm.neg.bw Download

GSE173498_eCLIP2.WT-high-2-IP.umi.r1.fq.genome-mappedSoSo.rmDupSo.norm.pos.bw Download

GSE173498_eCLIP2.WT-high-2-IP.umi.r1.fq.genome-mappedSoSo.rmDupSo.peakClusters.normed.compressed.bed.gz Download

GSE173498_eCLIP2.WT-high.bed.annotated_proxdist_miRlncRNA.txt.gz Download

GSE173498_eCLIP2.WT-low-1-IN.umi.r1.fq.genome-mappedSoSo.rmDupSo.norm.neg.bw Download

GSE173498_eCLIP2.WT-low-1-IN.umi.r1.fq.genome-mappedSoSo.rmDupSo.norm.pos.bw Download

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GSE173498_eCLIP2.WT-low-1-IP.umi.r1.fq.genome-mappedSoSo.rmDupSo.peakClusters.normed.compressed.bed.gz Download

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GSE173498_eCLIP2.WT-low-2-IP.umi.r1.fq.genome-mappedSoSo.rmDupSo.peakClusters.normed.compressed.bed.gz Download

GSE173498_eCLIP2.WT-low.bed.annotated_proxdist_miRlncRNA.txt.gz Download

GSE173498_eCLIP2.nsp10-1-IN.umi.r1.fq.genome-mappedSoSo.rmDupSo.norm.neg.bw Download

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GSE173498_eCLIP2.nsp10-1-IP.umi.r1.fq.genome-mappedSoSo.rmDupSo.peakClusters.normed.compressed.bed.gz Download

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GSE173498_eCLIP2.nsp10-2-IP.umi.r1.fq.genome-mappedSoSo.rmDupSo.peakClusters.normed.compressed.bed.gz Download

GSE173498_eCLIP2.nsp10.bed.annotated_proxdist_miRlncRNA.WTfiltered.txt.gz Download

GSE173498_eCLIP2.nsp15-1-IN.umi.r1.fq.genome-mappedSoSo.rmDupSo.norm.neg.bw Download

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GSE173498_eCLIP2.nsp15-1-IP.umi.r1.fq.genome-mappedSoSo.rmDupSo.peakClusters.normed.compressed.bed.gz Download

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GSE173498_eCLIP2.nsp15-2-IP.umi.r1.fq.genome-mappedSoSo.rmDupSo.peakClusters.normed.compressed.bed.gz Download

GSE173498_eCLIP2.nsp15.bed.annotated_proxdist_miRlncRNA.WTfiltered.txt.gz Download

GSE173498_eCLIP2.nsp5-C145A-1-IN.umi.r1.fq.genome-mappedSoSo.rmDupSo.norm.neg.bw Download

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GSE173498_eCLIP2.nsp5_C145A-2-IP.umi.r1.fq.genome-mappedSoSo.rmDupSo.peakClusters.normed.compressed.bed.gz Download

GSE173498_eCLIP2.nsp5_C145A.bed.annotated_proxdist_miRlncRNA.WTfiltered.txt.gz Download

GSE173498_eCLIP3.nsp9.bed.annotated_proxdist_miRlncRNA.WTfiltered.txt.gz Download

GSE173498_eCLIP3_3.nsp9-1-IN.umi.r1.fq.genome-mappedSoSo.rmDupSo.norm.neg.bw Download

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GSE173498_eCLIP4.NSP14.bed.annotated_proxdist_miRlncRNA.WTfiltered.txt.gz Download

GSE173498_eCLIP4.ORF10.bed.annotated_proxdist_miRlncRNA.WTfiltered.txt.gz Download

GSE173498_eCLIP4.SPIKE.bed.annotated_proxdist_miRlncRNA.WTfiltered.txt.gz Download

GSE173498_eCLIP4.WTH.bed.annotated_proxdist_miRlncRNA.txt.gz Download

GSE173498_eCLIP4.WTL.bed.annotated_proxdist_miRlncRNA.txt.gz Download

GSE173498_eCLIP4.nsp8.bed.annotated_proxdist_miRlncRNA.WTfiltered.txt.gz Download

GSE173498_eCLIP4_0.NSP11-2-IN.umi.r1.fq.genome-mappedSoSo.rmDupSo.norm.neg.bw Download

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GSE173498_eCLIP5_6.orf8-1-IN.umi.r1.fq.genome-mappedSoSo.rmDupSo.norm.neg.bw Download

GSE173498_eCLIP5_6.orf8-1-IN.umi.r1.fq.genome-mappedSoSo.rmDupSo.norm.pos.bw Download

GSE173498_eCLIP5_6.orf8-1-IP.umi.r1.fq.genome-mappedSoSo.rmDupSo.norm.neg.bw Download

GSE173498_eCLIP5_6.orf8-1-IP.umi.r1.fq.genome-mappedSoSo.rmDupSo.norm.pos.bw Download

GSE173498_eCLIP5_6.orf8-1-IP.umi.r1.fq.genome-mappedSoSo.rmDupSo.peakClusters.normed.compressed.bed.gz Download

GSE173498_eCLIP5_6.orf8-2-IN.umi.r1.fq.genome-mappedSoSo.rmDupSo.norm.neg.bw Download

GSE173498_eCLIP5_6.orf8-2-IN.umi.r1.fq.genome-mappedSoSo.rmDupSo.norm.pos.bw Download

GSE173498_eCLIP5_6.orf8-2-IP.umi.r1.fq.genome-mappedSoSo.rmDupSo.norm.neg.bw Download

GSE173498_eCLIP5_6.orf8-2-IP.umi.r1.fq.genome-mappedSoSo.rmDupSo.norm.pos.bw Download

GSE173498_eCLIP5_6.orf8-2-IP.umi.r1.fq.genome-mappedSoSo.rmDupSo.peakClusters.normed.compressed.bed.gz Download

GSE173498_eCLIP5_6.orf9b-1-IN.umi.r1.fq.genome-mappedSoSo.rmDupSo.norm.neg.bw Download

GSE173498_eCLIP5_6.orf9b-1-IN.umi.r1.fq.genome-mappedSoSo.rmDupSo.norm.pos.bw Download

GSE173498_eCLIP5_6.orf9b-1-IP.umi.r1.fq.genome-mappedSoSo.rmDupSo.norm.neg.bw Download

GSE173498_eCLIP5_6.orf9b-1-IP.umi.r1.fq.genome-mappedSoSo.rmDupSo.norm.pos.bw Download

GSE173498_eCLIP5_6.orf9b-1-IP.umi.r1.fq.genome-mappedSoSo.rmDupSo.peakClusters.normed.compressed.bed.gz Download

GSE173498_eCLIP5_6.orf9b-2-IN.umi.r1.fq.genome-mappedSoSo.rmDupSo.norm.neg.bw Download

GSE173498_eCLIP5_6.orf9b-2-IN.umi.r1.fq.genome-mappedSoSo.rmDupSo.norm.pos.bw Download

GSE173498_eCLIP5_6.orf9b-2-IP.umi.r1.fq.genome-mappedSoSo.rmDupSo.norm.neg.bw Download

GSE173498_eCLIP5_6.orf9b-2-IP.umi.r1.fq.genome-mappedSoSo.rmDupSo.norm.pos.bw Download

GSE173498_eCLIP5_6.orf9b-2-IP.umi.r1.fq.genome-mappedSoSo.rmDupSo.peakClusters.normed.compressed.bed.gz Download

GSE173498_eCLIP5_7.orf9c-1-IN.umi.r1.fq.genome-mappedSoSo.rmDupSo.norm.neg.bw Download

GSE173498_eCLIP5_7.orf9c-1-IN.umi.r1.fq.genome-mappedSoSo.rmDupSo.norm.pos.bw Download

GSE173498_eCLIP5_7.orf9c-1-IP.umi.r1.fq.genome-mappedSoSo.rmDupSo.norm.neg.bw Download

GSE173498_eCLIP5_7.orf9c-1-IP.umi.r1.fq.genome-mappedSoSo.rmDupSo.norm.pos.bw Download

GSE173498_eCLIP5_7.orf9c-1-IP.umi.r1.fq.genome-mappedSoSo.rmDupSo.peakClusters.normed.compressed.bed.gz Download

GSE173498_eCLIP5_7.orf9c-2-IN.umi.r1.fq.genome-mappedSoSo.rmDupSo.norm.neg.bw Download

GSE173498_eCLIP5_7.orf9c-2-IN.umi.r1.fq.genome-mappedSoSo.rmDupSo.norm.pos.bw Download

GSE173498_eCLIP5_7.orf9c-2-IP.umi.r1.fq.genome-mappedSoSo.rmDupSo.norm.neg.bw Download

GSE173498_eCLIP5_7.orf9c-2-IP.umi.r1.fq.genome-mappedSoSo.rmDupSo.norm.pos.bw Download

GSE173498_eCLIP5_7.orf9c-2-IP.umi.r1.fq.genome-mappedSoSo.rmDupSo.peakClusters.normed.compressed.bed.gz Download

GSE173498_eCLIP6.NSP11-1-IN.umi.r1.fq.genome-mappedSoSo.rmDupSo.norm.neg.bw Download

GSE173498_eCLIP6.NSP11-1-IN.umi.r1.fq.genome-mappedSoSo.rmDupSo.norm.pos.bw Download

GSE173498_eCLIP6.NSP11-1-IP.umi.r1.fq.genome-mappedSoSo.rmDupSo.norm.neg.bw Download

GSE173498_eCLIP6.NSP11-1-IP.umi.r1.fq.genome-mappedSoSo.rmDupSo.norm.pos.bw Download

GSE173498_eCLIP6.NSP11-1-IP.umi.r1.fq.genome-mappedSoSo.rmDupSo.peakClusters.normed.compressed.bed.gz Download

GSE173498_eCLIP6.NSP13-2-IN.umi.r1.fq.genome-mappedSoSo.rmDupSo.norm.neg.bw Download

GSE173498_eCLIP6.NSP13-2-IN.umi.r1.fq.genome-mappedSoSo.rmDupSo.norm.pos.bw Download

GSE173498_eCLIP6.NSP13-2-IP.umi.r1.fq.genome-mappedSoSo.rmDupSo.norm.neg.bw Download

GSE173498_eCLIP6.NSP13-2-IP.umi.r1.fq.genome-mappedSoSo.rmDupSo.norm.pos.bw Download

GSE173498_eCLIP6.NSP13-2-IP.umi.r1.fq.genome-mappedSoSo.rmDupSo.peakClusters.normed.compressed.bed.gz Download

GSE173498_eCLIP6.NSP4-1-IN.umi.r1.fq.genome-mappedSoSo.rmDupSo.norm.neg.bw Download

GSE173498_eCLIP6.NSP4-1-IN.umi.r1.fq.genome-mappedSoSo.rmDupSo.norm.pos.bw Download

GSE173498_eCLIP6.NSP4-1-IP.umi.r1.fq.genome-mappedSoSo.rmDupSo.norm.neg.bw Download

GSE173498_eCLIP6.NSP4-1-IP.umi.r1.fq.genome-mappedSoSo.rmDupSo.norm.pos.bw Download

GSE173498_eCLIP6.NSP4-1-IP.umi.r1.fq.genome-mappedSoSo.rmDupSo.peakClusters.normed.compressed.bed.gz Download

GSE173498_eCLIP6.nsp11.bed.annotated_proxdist_miRlncRNA.WTfiltered.txt.gz Download

GSE173498_eCLIP6.nsp13.bed.annotated_proxdist_miRlncRNA.WTfiltered.txt.gz Download

GSE173498_eCLIP6.nsp4.bed.annotated_proxdist_miRlncRNA.WTfiltered.txt.gz Download

GSE173498_eCLIP7.NSP1-1-IN.umi.r1.fq.genome-mappedSoSo.rmDupSo.norm.neg.bw Download

GSE173498_eCLIP7.NSP1-1-IN.umi.r1.fq.genome-mappedSoSo.rmDupSo.norm.pos.bw Download

GSE173498_eCLIP7.NSP1-1-IP.umi.r1.fq.genome-mappedSoSo.rmDupSo.norm.neg.bw Download

GSE173498_eCLIP7.NSP1-1-IP.umi.r1.fq.genome-mappedSoSo.rmDupSo.norm.pos.bw Download

GSE173498_eCLIP7.NSP1-1-IP.umi.r1.fq.genome-mappedSoSo.rmDupSo.peakClusters.normed.compressed.bed.gz Download

GSE173498_eCLIP7.NSP1-2-IN.umi.r1.fq.genome-mappedSoSo.rmDupSo.norm.neg.bw Download

GSE173498_eCLIP7.NSP1-2-IN.umi.r1.fq.genome-mappedSoSo.rmDupSo.norm.pos.bw Download

GSE173498_eCLIP7.NSP1-2-IP.umi.r1.fq.genome-mappedSoSo.rmDupSo.norm.neg.bw Download

GSE173498_eCLIP7.NSP1-2-IP.umi.r1.fq.genome-mappedSoSo.rmDupSo.norm.pos.bw Download

GSE173498_eCLIP7.NSP1-2-IP.umi.r1.fq.genome-mappedSoSo.rmDupSo.peakClusters.normed.compressed.bed.gz Download

GSE173498_eCLIP7.NSP16-1-IN.umi.r1.fq.genome-mappedSoSo.rmDupSo.norm.neg.bw Download

GSE173498_eCLIP7.NSP16-1-IN.umi.r1.fq.genome-mappedSoSo.rmDupSo.norm.pos.bw Download

GSE173498_eCLIP7.NSP16-1-IP.umi.r1.fq.genome-mappedSoSo.rmDupSo.norm.neg.bw Download

GSE173498_eCLIP7.NSP16-1-IP.umi.r1.fq.genome-mappedSoSo.rmDupSo.norm.pos.bw Download

GSE173498_eCLIP7.NSP16-1-IP.umi.r1.fq.genome-mappedSoSo.rmDupSo.peakClusters.normed.compressed.bed.gz Download

GSE173498_eCLIP7.NSP16-2-IN.umi.r1.fq.genome-mappedSoSo.rmDupSo.norm.neg.bw Download

GSE173498_eCLIP7.NSP16-2-IN.umi.r1.fq.genome-mappedSoSo.rmDupSo.norm.pos.bw Download

GSE173498_eCLIP7.NSP16-2-IP.umi.r1.fq.genome-mappedSoSo.rmDupSo.norm.neg.bw Download

GSE173498_eCLIP7.NSP16-2-IP.umi.r1.fq.genome-mappedSoSo.rmDupSo.norm.pos.bw Download

GSE173498_eCLIP7.NSP16-2-IP.umi.r1.fq.genome-mappedSoSo.rmDupSo.peakClusters.normed.compressed.bed.gz Download

GSE173498_eCLIP8_1.Vero_N-1-IN.umi.r1.fq.genome-mappedSoSo.rmDupSo.norm.neg.bw Download

GSE173498_eCLIP8_1.Vero_N-1-IN.umi.r1.fq.genome-mappedSoSo.rmDupSo.norm.pos.bw Download

GSE173498_eCLIP8_1.Vero_N-1-IP.umi.r1.fq.genome-mappedSoSo.rmDupSo.norm.neg.bw Download

GSE173498_eCLIP8_1.Vero_N-1-IP.umi.r1.fq.genome-mappedSoSo.rmDupSo.norm.pos.bw Download

GSE173498_eCLIP8_1.Vero_N-1-IP.umi.r1.fq.genome-mappedSoSo.rmDupSo.peakClusters.normed.compressed.bed.gz Download

GSE173498_eCLIP8_1.Vero_N-2-IN.umi.r1.fq.genome-mappedSoSo.rmDupSo.norm.neg.bw Download

GSE173498_eCLIP8_1.Vero_N-2-IN.umi.r1.fq.genome-mappedSoSo.rmDupSo.norm.pos.bw Download

GSE173498_eCLIP8_1.Vero_N-2-IP.umi.r1.fq.genome-mappedSoSo.rmDupSo.norm.neg.bw Download

GSE173498_eCLIP8_1.Vero_N-2-IP.umi.r1.fq.genome-mappedSoSo.rmDupSo.norm.pos.bw Download

GSE173498_eCLIP8_1.Vero_N-2-IP.umi.r1.fq.genome-mappedSoSo.rmDupSo.peakClusters.normed.compressed.bed.gz Download

GSE173498_eCLIP8_1.Vero_NSP12-1-IN.umi.r1.fq.genome-mappedSoSo.rmDupSo.norm.neg.bw Download

GSE173498_eCLIP8_1.Vero_NSP12-1-IN.umi.r1.fq.genome-mappedSoSo.rmDupSo.norm.pos.bw Download

GSE173498_eCLIP8_1.Vero_NSP12-1-IP.umi.r1.fq.genome-mappedSoSo.rmDupSo.norm.neg.bw Download

GSE173498_eCLIP8_1.Vero_NSP12-1-IP.umi.r1.fq.genome-mappedSoSo.rmDupSo.norm.pos.bw Download

GSE173498_eCLIP8_1.Vero_NSP12-1-IP.umi.r1.fq.genome-mappedSoSo.rmDupSo.peakClusters.normed.compressed.bed.gz Download

GSE173498_eCLIP8_1.Vero_NSP12-2-IN.umi.r1.fq.genome-mappedSoSo.rmDupSo.norm.neg.bw Download

GSE173498_eCLIP8_1.Vero_NSP12-2-IN.umi.r1.fq.genome-mappedSoSo.rmDupSo.norm.pos.bw Download

GSE173498_eCLIP8_1.Vero_NSP12-2-IP.umi.r1.fq.genome-mappedSoSo.rmDupSo.norm.neg.bw Download

GSE173498_eCLIP8_1.Vero_NSP12-2-IP.umi.r1.fq.genome-mappedSoSo.rmDupSo.norm.pos.bw Download

GSE173498_eCLIP8_1.Vero_NSP12-2-IP.umi.r1.fq.genome-mappedSoSo.rmDupSo.peakClusters.normed.compressed.bed.gz Download

GSE173498_eCLIP8_1.Vero_NSP8-1-IN.umi.r1.fq.genome-mappedSoSo.rmDupSo.norm.neg.bw Download

GSE173498_eCLIP8_1.Vero_NSP8-1-IN.umi.r1.fq.genome-mappedSoSo.rmDupSo.norm.pos.bw Download

GSE173498_eCLIP8_1.Vero_NSP8-1-IP.umi.r1.fq.genome-mappedSoSo.rmDupSo.norm.neg.bw Download

GSE173498_eCLIP8_1.Vero_NSP8-1-IP.umi.r1.fq.genome-mappedSoSo.rmDupSo.norm.pos.bw Download

GSE173498_eCLIP8_1.Vero_NSP8-1-IP.umi.r1.fq.genome-mappedSoSo.rmDupSo.peakClusters.normed.compressed.bed.gz Download

GSE173498_eCLIP8_1.Vero_NSP8-2-IN.umi.r1.fq.genome-mappedSoSo.rmDupSo.norm.neg.bw Download

GSE173498_eCLIP8_1.Vero_NSP8-2-IN.umi.r1.fq.genome-mappedSoSo.rmDupSo.norm.pos.bw Download

GSE173498_eCLIP8_1.Vero_NSP8-2-IP.umi.r1.fq.genome-mappedSoSo.rmDupSo.norm.neg.bw Download

GSE173498_eCLIP8_1.Vero_NSP8-2-IP.umi.r1.fq.genome-mappedSoSo.rmDupSo.norm.pos.bw Download

GSE173498_eCLIP8_1.Vero_NSP8-2-IP.umi.r1.fq.genome-mappedSoSo.rmDupSo.peakClusters.normed.compressed.bed.gz Download

GSE173498_eCLIP8_1.Vero_RbIgG_LMW-1-IN.umi.r1.fq.genome-mappedSoSo.rmDupSo.norm.neg.bw Download

GSE173498_eCLIP8_1.Vero_RbIgG_LMW-1-IN.umi.r1.fq.genome-mappedSoSo.rmDupSo.norm.pos.bw Download

GSE173498_eCLIP8_1.Vero_RbIgG_LMW-1-IP.umi.r1.fq.genome-mappedSoSo.rmDupSo.norm.neg.bw Download

GSE173498_eCLIP8_1.Vero_RbIgG_LMW-1-IP.umi.r1.fq.genome-mappedSoSo.rmDupSo.norm.pos.bw Download

GSE173498_eCLIP8b_Vero_N-1.vs.eCLIP8b_Vero_N-2.bed.gz Download

GSE173498_eCLIP8b_Vero_NSP12-1.vs.eCLIP8b_Vero_NSP12-2.bed.gz Download

GSE173498_eCLIP8b_Vero_NSP8-1.vs.eCLIP8b_Vero_NSP8-2.bed.gz Download

GSE173498_nsp10_reproducible_peaks.bed.gz Download

GSE173498_nsp11-1.vs.nsp11-2.bed.gz Download

GSE173498_nsp12-1.vs.nsp12-2.bed.gz Download

GSE173498_nsp13-1.vs.nsp13-2.bed.gz Download

GSE173498_nsp15_reproducible_peaks.bed.gz Download

GSE173498_nsp2-1.vs.nsp2-2.bed.gz Download

GSE173498_nsp3-1.vs.nsp3-2.bed.gz Download

GSE173498_nsp4-1.vs.nsp4-2.bed.gz Download

GSE173498_nsp5-1.vs.nsp5-2.bed.gz Download

GSE173498_nsp5_C145A_reproducible_peaks.bed.gz Download

GSE173498_nsp6-1.vs.nsp6-2.bed.gz Download

GSE173498_nsp7-1.vs.nsp7-2.bed.gz Download

GSE173498_nsp8-1.vs.nsp8-2.bed.gz Download

GSE173498_nsp9-1.vs.nsp9-2.bed.gz Download

GSE173498_orf3b-1.vs.orf3b-2.bed.gz Download

GSE173498_orf7b-1.vs.orf7b-2.bed.gz Download

GSE173498_orf8-1.vs.orf8-2.bed.gz Download

GSE173498_orf9b-1.vs.orf9b-2.bed.gz Download

GSE173498_orf9c-1.vs.orf9c-2.bed.gz Download

GEO Samples (147)

GSM5268670 GSM5268671 GSM5268672 GSM5268673 GSM5268674 GSM5268675 GSM5268676 GSM5268677 GSM5268678 GSM5268679 GSM5268680 GSM5268681 GSM5268682 GSM5268683 GSM5268684 GSM5268685 GSM5268686 GSM5268687 GSM5268688 GSM5268689 GSM5268690 GSM5268691 GSM5268692 GSM5268693 GSM5268694 GSM5268695 GSM5268696 GSM5268697 GSM5268698 GSM5268699 GSM5268700 GSM5268701 GSM5268702 GSM5268703 GSM5268704 GSM5268705 GSM5268706 GSM5268707 GSM5268708 GSM5268709 GSM5268710 GSM5268711 GSM5268712 GSM5268713 GSM5268714 GSM5268715 GSM5268716 GSM5268717 GSM5268718 GSM5268719 GSM5268720 GSM5268721 GSM5268722 GSM5268723 GSM5268724 GSM5268725 GSM5268726 GSM5268727 GSM5268728 GSM5268729 GSM5268730 GSM5268731 GSM5268732 GSM5268733 GSM5268734 GSM5268735 GSM5268736 GSM5268737 GSM5268738 GSM5268739 GSM5268740 GSM5268741 GSM5268742 GSM5268743 GSM5268744 GSM5268745 GSM5268746 GSM5268747 GSM5268748 GSM5268749 GSM5268750 GSM5268751 GSM5268752 GSM5268753 GSM5268754 GSM5268755 GSM5268756 GSM5268757 GSM5268758 GSM5268759 GSM5268760 GSM5268761 GSM5268762 GSM5268763 GSM5268764 GSM5268765 GSM5268766 GSM5268767 GSM5268768 GSM5268769 GSM5268770 GSM5268771 GSM5268772 GSM5268773 GSM5268774 GSM5268775 GSM5268776 GSM5268777 GSM5268778 GSM5268779 GSM5268780 GSM5268781 GSM5268782 GSM5268783 GSM5268784 GSM5268785 GSM5268786 GSM5268787 GSM5268788 GSM5268789 GSM5268790 GSM5268791 GSM5268792 GSM5268793 GSM5268794 GSM5268795 GSM5268796 GSM5268797 GSM5268798 GSM5268799 GSM5268800 GSM5268801 GSM5268802 GSM5268803 GSM5268804 GSM5268805 GSM5268806 GSM5268807 GSM5268808 GSM5268809 GSM5268810 GSM5268811 GSM5268812 GSM5268813 GSM5268814 GSM5268815 GSM5268816

Dataset Citations (2)

Discovery and functional interrogation of SARS-CoV-2 protein-RNA interactions.

PMID 35233578 · 2022 · bioRxiv : the preprint server for biology

Joy S Xiang, Jasmine R Mueller, En-Ching Luo, Brian A Yee, Danielle Schafer, Jonathan C Schmok, Frederick E Tan, Katherine Rothamel, Rachael N McVicar, Elizabeth M Kwong, Krysten L Jones, Hsuan-Lin Her, Chun-Yuan Chen, Anthony Q Vu, Wenhao Jin, Samuel S Park, Phuong Le, Kristopher W Brannan, Eric R Kofman, Yanhua Li, Alexandra T Tankka, Kevin D Dong, Yan Song, Aaron F Carlin, Eric L Van Nostrand, Sandra L Leibel, Gene W Yeo

Discovery and functional interrogation of SARS-CoV-2 protein-RNA interactions.

PMID 35313591 · 2022 · Research square

Joy S Xiang, Jasmine R Mueller, En-Ching Luo, Brian A Yee, Danielle Schafer, Jonathan C Schmok, Frederick E Tan, Katherine Rothamel, Rachael N McVicar, Elizabeth M Kwong, Ben A Croker, Krysten L Jones, Hsuan-Lin Her, Chun-Yuan Chen, Anthony Q Vu, Wenhao Jin, Samuel S Park, Phuong Le, Kristopher W Brannan, Eric R Kofman, Yanhua Li, Alexandra T Tankka, Kevin D Dong, Yan Song, Alex E Clark, Aaron F Carlin, Eric L Van Nostrand, Sandra L Leibel, Gene W Yeo

SRA Experiments (147) and Runs (147)

Total: 165834 MB

SRX10697838 SRP316737 OTHER SINGLE

GSM5268670: NSP1 rep1 IP; Homo sapiens; OTHER

Sample: SRS8787251

BioProject: PRJNA725841

BioSample: SAMN18906542

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Homo sapiens

Sample attributes

source_name: BEAS-2B expressing NSP1

antibody manufacturer: Sigma-Aldrich

antibody: 3XFLAG tag

adapter: InvRNA1

Original files (1)

BEAS-2B expressing NSP1

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14343981	57316077	4356021852	1468.61	NSP1-1-IP_S2_L002_R1_001.fastq.gz, SRR14343981, SRR14343981.lite	SRA

SRX10697839 SRP316737 OTHER SINGLE

GSM5268671: NSP1 rep2 IP; Homo sapiens; OTHER

Sample: SRS8787252

BioProject: PRJNA725841

BioSample: SAMN18906541

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Homo sapiens

Sample attributes

source_name: BEAS-2B expressing NSP1

antibody manufacturer: Sigma-Aldrich

antibody: 3XFLAG tag

adapter: InvRNA2

Original files (1)

BEAS-2B expressing NSP1

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14343982	20658055	1570012180	533.05	NSP1-2-IP_S4_L002_R1_001.fastq.gz, SRR14343982, SRR14343982.lite	SRA

SRX10697840 SRP316737 OTHER SINGLE

GSM5268672: NSP2 rep1 IP; Homo sapiens; OTHER

Sample: SRS8787253

BioProject: PRJNA725841

BioSample: SAMN18906540

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Homo sapiens

Sample attributes

source_name: BEAS-2B expressing NSP2

antibody manufacturer: IBA Lifesciences

antibody: 2xStrep tag

adapter: InvRNA1

Original files (1)

BEAS-2B expressing NSP2

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14343983	53171630	5370334630	1686.64	nsp2-1-IP_S8_L004_R1_001.fastq.gz, SRR14343983, SRR14343983.lite	SRA

SRX10697841 SRP316737 OTHER SINGLE

GSM5268673: NSP2 rep2 IP; Homo sapiens; OTHER

Sample: SRS8787254

BioProject: PRJNA725841

BioSample: SAMN18906539

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Homo sapiens

Sample attributes

source_name: BEAS-2B expressing NSP2

antibody manufacturer: IBA Lifesciences

antibody: 2xStrep tag

adapter: InvRNA2

Original files (1)

BEAS-2B expressing NSP2

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14343984	53231691	5376400791	1684.2	nsp2-2-IP_S11_L004_R1_001.fastq.gz, SRR14343984, SRR14343984.lite	SRA

SRX10697842 SRP316737 OTHER SINGLE

GSM5268674: NSP3 rep1 IP; Homo sapiens; OTHER

Sample: SRS8787255

BioProject: PRJNA725841

BioSample: SAMN18906538

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Homo sapiens

Sample attributes

source_name: BEAS-2B expressing NSP3

antibody manufacturer: Sigma-Aldrich

antibody: 3XFLAG tag

adapter: InvRNA3

Original files (1)

BEAS-2B expressing NSP3

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14343985	63144788	6377623588	1940.82	nsp3-1-IP_S9_L004_R1_001.fastq.gz, SRR14343985, SRR14343985.lite	SRA

SRX10697843 SRP316737 OTHER SINGLE

GSM5268675: NSP3 rep2 IP; Homo sapiens; OTHER

Sample: SRS8787256

BioProject: PRJNA725841

BioSample: SAMN18906537

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Homo sapiens

Sample attributes

source_name: BEAS-2B expressing NSP3

antibody manufacturer: Sigma-Aldrich

antibody: 3XFLAG tag

adapter: InvRNA4

Original files (1)

BEAS-2B expressing NSP3

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14343986	52230914	5275322314	1615.38	nsp3-2-IP_S12_L004_R1_001.fastq.gz, SRR14343986, SRR14343986.lite	SRA

SRX10697844 SRP316737 OTHER SINGLE

GSM5268676: NSP4 rep1 IP; Homo sapiens; OTHER

Sample: SRS8787257

BioProject: PRJNA725841

BioSample: SAMN18906536

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Homo sapiens

Sample attributes

source_name: BEAS-2B expressing NSP4

antibody manufacturer: Sigma-Aldrich

antibody: 3XFLAG tag

adapter: InvRNA1

Original files (1)

BEAS-2B expressing NSP4

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14343987	13082827	994294852	396.03	Nsp4-1-IP_S27_L007_R1_001.fastq.gz, SRR14343987, SRR14343987.lite	SRA

SRX10697845 SRP316737 OTHER SINGLE

GSM5268677: NSP4 rep2 IP; Homo sapiens; OTHER

Sample: SRS8787258

BioProject: PRJNA725841

BioSample: SAMN18906535

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Homo sapiens

Sample attributes

source_name: BEAS-2B expressing NSP4

antibody manufacturer: Sigma-Aldrich

antibody: 3XFLAG tag

adapter: InvRNA2

Original files (1)

BEAS-2B expressing NSP4

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14343988	23353118	2358664918	737.62	NSP4_2_IP_S28_L003_R1_001.fastq.gz, SRR14343988, SRR14343988.lite	SRA

SRX10697846 SRP316737 OTHER SINGLE

GSM5268678: NSP5 rep1 IP; Homo sapiens; OTHER

Sample: SRS8787259

BioProject: PRJNA725841

BioSample: SAMN18906534

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Homo sapiens

Sample attributes

source_name: BEAS-2B expressing NSP5

antibody manufacturer: Sigma-Aldrich

antibody: 3XFLAG tag

adapter: InvRNA1

Original files (1)

BEAS-2B expressing NSP5

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14343989	56409204	5697329604	1774.73	nsp5-1-IP_S44_L004_R1_001.fastq.gz, SRR14343989, SRR14343989.lite	SRA

SRX10697847 SRP316737 OTHER SINGLE

GSM5268679: NSP5 rep2 IP; Homo sapiens; OTHER

Sample: SRS8787260

BioProject: PRJNA725841

BioSample: SAMN18906533

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Homo sapiens

Sample attributes

source_name: BEAS-2B expressing NSP5

antibody manufacturer: Sigma-Aldrich

antibody: 3XFLAG tag

adapter: InvRNA2

Original files (1)

BEAS-2B expressing NSP5

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14343990	89536724	9043209124	2790.43	nsp5-2-IP_S39_L004_R1_001.fastq.gz, SRR14343990, SRR14343990.lite	SRA

SRX10697848 SRP316737 OTHER SINGLE

GSM5268680: NSP5_C145A rep1 IP; Homo sapiens; OTHER

Sample: SRS8787261

BioProject: PRJNA725841

BioSample: SAMN18906532

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Homo sapiens

Sample attributes

source_name: BEAS-2B expressing NSP5_C145A

antibody manufacturer: IBA Lifesciences

antibody: 2xStrep tag

adapter: InvRNA1

Original files (1)

BEAS-2B expressing NSP5_C145A

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14343991	16102553	1626357853	522.02	nsp5_C145A-IP1_S48_L002_R1_001.fastq.gz, SRR14343991, SRR14343991.lite	SRA

SRX10697849 SRP316737 OTHER SINGLE

GSM5268681: NSP5_C145A rep2 IP; Homo sapiens; OTHER

Sample: SRS8787262

BioProject: PRJNA725841

BioSample: SAMN18906531

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Homo sapiens

Sample attributes

source_name: BEAS-2B expressing NSP5_C145A

antibody manufacturer: IBA Lifesciences

antibody: 2xStrep tag

adapter: InvRNA2

Original files (1)

BEAS-2B expressing NSP5_C145A

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14343992	16121345	1628255845	528.5	nsp5_C145A-IP2_S50_L002_R1_001.fastq.gz, SRR14343992, SRR14343992.lite	SRA

SRX10697850 SRP316737 OTHER SINGLE

GSM5268682: NSP6 rep1 IP; Homo sapiens; OTHER

Sample: SRS8787263

BioProject: PRJNA725841

BioSample: SAMN18906530

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Homo sapiens

Sample attributes

source_name: BEAS-2B expressing NSP6

antibody manufacturer: Sigma-Aldrich

antibody: 3XFLAG tag

adapter: InvRNA1

Original files (1)

BEAS-2B expressing NSP6

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14343993	53592386	5412830986	1663.0	nsp6-1-IP_S10_L004_R1_001.fastq.gz, SRR14343993, SRR14343993.lite	SRA

SRX10697851 SRP316737 OTHER SINGLE

GSM5268683: NSP6 rep2 IP; Homo sapiens; OTHER

Sample: SRS8787264

BioProject: PRJNA725841

BioSample: SAMN18906529

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Homo sapiens

Sample attributes

source_name: BEAS-2B expressing NSP6

antibody manufacturer: Sigma-Aldrich

antibody: 3XFLAG tag

adapter: InvRNA2

Original files (1)

BEAS-2B expressing NSP6

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14343994	63064464	6369510864	1938.18	nsp6-2-IP_S7_L004_R1_001.fastq.gz, SRR14343994, SRR14343994.lite	SRA

SRX10697852 SRP316737 OTHER SINGLE

GSM5268684: NSP7 rep1 IP; Homo sapiens; OTHER

Sample: SRS8787265

BioProject: PRJNA725841

BioSample: SAMN18906528

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Homo sapiens

Sample attributes

source_name: BEAS-2B expressing NSP7

antibody manufacturer: Sigma-Aldrich

antibody: 3XFLAG tag

adapter: InvRNA3

Original files (1)

BEAS-2B expressing NSP7

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14343995	26691125	2695803625	829.74	nsp7-1-IP_S16_L004_R1_001.fastq.gz, SRR14343995, SRR14343995.lite	SRA

SRX10697853 SRP316737 OTHER SINGLE

GSM5268685: NSP7 rep2 IP; Homo sapiens; OTHER

Sample: SRS8787266

BioProject: PRJNA725841

BioSample: SAMN18906597

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Homo sapiens

Sample attributes

source_name: BEAS-2B expressing NSP7

antibody manufacturer: Sigma-Aldrich

antibody: 3XFLAG tag

adapter: InvRNA4

Original files (1)

BEAS-2B expressing NSP7

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14343996	38558144	3894372544	1221.07	nsp7-2-IP_S15_L004_R1_001.fastq.gz, SRR14343996, SRR14343996.lite	SRA

SRX10697854 SRP316737 OTHER SINGLE

GSM5268686: NSP8 rep1 IP; Homo sapiens; OTHER

Sample: SRS8787267

BioProject: PRJNA725841

BioSample: SAMN18906596

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Homo sapiens

Sample attributes

source_name: BEAS-2B expressing NSP8

antibody manufacturer: Sigma-Aldrich

antibody: 3XFLAG tag

adapter: InvRNA1

Original files (1)

BEAS-2B expressing NSP8

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14343997	33370055	3370375555	1040.57	NSP8_1_IP_S39_L003_R1_001.fastq.gz, SRR14343997, SRR14343997.lite	SRA

SRX10697855 SRP316737 OTHER SINGLE

GSM5268687: NSP8 rep2 IP; Homo sapiens; OTHER

Sample: SRS8787268

BioProject: PRJNA725841

BioSample: SAMN18906595

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Homo sapiens

Sample attributes

source_name: BEAS-2B expressing NSP8

antibody manufacturer: Sigma-Aldrich

antibody: 3XFLAG tag

adapter: InvRNA2

Original files (1)

BEAS-2B expressing NSP8

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14343998	29967426	3026710026	942.77	NSP8_2_IP_S43_L003_R1_001.fastq.gz, SRR14343998, SRR14343998.lite	SRA

SRX10697856 SRP316737 OTHER SINGLE

GSM5268688: NSP9 rep1 IP; Homo sapiens; OTHER

Sample: SRS8787269

BioProject: PRJNA725841

BioSample: SAMN18906594

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Homo sapiens

Sample attributes

source_name: BEAS-2B expressing NSP9

antibody manufacturer: IBA Lifesciences

antibody: 2xStrep tag

adapter: InvRNA4

Original files (1)

BEAS-2B expressing NSP9

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14343999	23931876	2417119476	775.22	nsp9-1-IP_S36_L001_R1_001.fastq.gz, SRR14343999, SRR14343999.lite	SRA

SRX10697857 SRP316737 OTHER SINGLE

GSM5268689: NSP9 rep2 IP; Homo sapiens; OTHER

Sample: SRS8787270

BioProject: PRJNA725841

BioSample: SAMN18906593

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Homo sapiens

Sample attributes

source_name: BEAS-2B expressing NSP9

antibody manufacturer: IBA Lifesciences

antibody: 2xStrep tag

adapter: InvRNA2

Original files (1)

BEAS-2B expressing NSP9

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14344000	36447000	3681147000	1166.24	nsp9-2-IP_S31_L001_R1_001.fastq.gz, SRR14344000, SRR14344000.lite	SRA

SRX10697858 SRP316737 OTHER SINGLE

GSM5268690: NSP10 rep1 IP; Homo sapiens; OTHER

Sample: SRS8787271

BioProject: PRJNA725841

BioSample: SAMN18906592

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Homo sapiens

Sample attributes

source_name: BEAS-2B expressing NSP10

antibody manufacturer: IBA Lifesciences

antibody: 2xStrep tag

adapter: InvRNA1

Original files (1)

BEAS-2B expressing NSP10

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14344001	24929845	2517914345	813.39	nsp10-IP1_S103_L002_R1_001.fastq.gz, SRR14344001, SRR14344001.lite	SRA

SRX10697859 SRP316737 OTHER SINGLE

GSM5268691: NSP10 rep2 IP; Homo sapiens; OTHER

Sample: SRS8787272

BioProject: PRJNA725841

BioSample: SAMN18906591

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Homo sapiens

Sample attributes

source_name: BEAS-2B expressing NSP10

antibody manufacturer: IBA Lifesciences

antibody: 2xStrep tag

adapter: InvRNA2

Original files (1)

BEAS-2B expressing NSP10

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14344002	22231970	2245428970	721.53	nsp10-IP2_S104_L002_R1_001.fastq.gz, SRR14344002, SRR14344002.lite	SRA

SRX10697860 SRP316737 OTHER SINGLE

GSM5268692: NSP11 rep1 IP; Homo sapiens; OTHER

Sample: SRS8787273

BioProject: PRJNA725841

BioSample: SAMN18906590

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Homo sapiens

Sample attributes

source_name: BEAS-2B expressing NSP11

antibody manufacturer: Sigma-Aldrich

antibody: 3XFLAG tag

adapter: InvRNA3

Original files (1)

BEAS-2B expressing NSP11

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14344003	23675765	2391252265	734.58	NSP11_1_IP_S47_L003_R1_001.fastq.gz, SRR14344003, SRR14344003.lite	SRA

SRX10697861 SRP316737 OTHER SINGLE

GSM5268693: NSP11 rep2 IP; Homo sapiens; OTHER

Sample: SRS8787274

BioProject: PRJNA725841

BioSample: SAMN18906589

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Homo sapiens

Sample attributes

source_name: BEAS-2B expressing NSP11

antibody manufacturer: Sigma-Aldrich

antibody: 3XFLAG tag

adapter: InvRNA4

Original files (1)

BEAS-2B expressing NSP11

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14344004	22579049	2280483949	727.58	NSP11_2_IP_S44_L003_R1_001.fastq.gz, SRR14344004, SRR14344004.lite	SRA

SRX10697862 SRP316737 OTHER SINGLE

GSM5268694: NSP12 rep1 IP; Homo sapiens; OTHER

Sample: SRS8787275

BioProject: PRJNA725841

BioSample: SAMN18906588

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Homo sapiens

Sample attributes

source_name: BEAS-2B expressing NSP12

antibody manufacturer: Sigma-Aldrich

antibody: 3XFLAG tag

adapter: InvRNA1

Original files (1)

BEAS-2B expressing NSP12

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14344005	47309989	4778308889	1474.14	nsp12-1-IP_S42_L004_R1_001.fastq.gz, SRR14344005, SRR14344005.lite	SRA

SRX10697863 SRP316737 OTHER SINGLE

GSM5268695: NSP12 rep2 IP; Homo sapiens; OTHER

Sample: SRS8787276

BioProject: PRJNA725841

BioSample: SAMN18906587

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Homo sapiens

Sample attributes

source_name: BEAS-2B expressing NSP12

antibody manufacturer: Sigma-Aldrich

antibody: 3XFLAG tag

adapter: InvRNA2

Original files (1)

BEAS-2B expressing NSP12

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14344006	45183130	4563496130	1414.77	nsp12-2-IP_S43_L004_R1_001.fastq.gz, SRR14344006, SRR14344006.lite	SRA

SRX10697864 SRP316737 OTHER SINGLE

GSM5268696: NSP13 rep1 IP; Homo sapiens; OTHER

Sample: SRS8787277

BioProject: PRJNA725841

BioSample: SAMN18906586

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Homo sapiens

Sample attributes

source_name: BEAS-2B expressing NSP13

antibody manufacturer: Sigma-Aldrich

antibody: 3XFLAG tag

adapter: InvRNA1

Original files (1)

BEAS-2B expressing NSP13

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14344007	24367630	2461130630	771.88	NSP13_1_IP_S45_L003_R1_001.fastq.gz, SRR14344007, SRR14344007.lite	SRA

SRX10697865 SRP316737 OTHER SINGLE

GSM5268697: NSP13 rep2 IP; Homo sapiens; OTHER

Sample: SRS8787278

BioProject: PRJNA725841

BioSample: SAMN18906584

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Homo sapiens

Sample attributes

source_name: BEAS-2B expressing NSP13

antibody manufacturer: Sigma-Aldrich

antibody: 3XFLAG tag

adapter: InvRNA2

Original files (1)

BEAS-2B expressing NSP13

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14344008	25371704	2562542104	804.84	NSP13_2_IP_S38_L003_R1_001.fastq.gz, SRR14344008, SRR14344008.lite	SRA

SRX10697866 SRP316737 OTHER SINGLE

GSM5268698: NSP14 rep1 IP; Homo sapiens; OTHER

Sample: SRS8787279

BioProject: PRJNA725841

BioSample: SAMN18906460

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Homo sapiens

Sample attributes

source_name: BEAS-2B expressing NSP14

antibody manufacturer: Sigma-Aldrich

antibody: 3XFLAG tag

adapter: InvRNA3

Original files (1)

BEAS-2B expressing NSP14

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14344009	20857230	2106580230	641.11	NSP14_1_IP_S31_L003_R1_001.fastq.gz, SRR14344009, SRR14344009.lite	SRA

SRX10697867 SRP316737 OTHER SINGLE

GSM5268699: NSP14 rep2 IP; Homo sapiens; OTHER

Sample: SRS8787280

BioProject: PRJNA725841

BioSample: SAMN18906459

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Homo sapiens

Sample attributes

source_name: BEAS-2B expressing NSP14

antibody manufacturer: Sigma-Aldrich

antibody: 3XFLAG tag

adapter: InvRNA4

Original files (1)

BEAS-2B expressing NSP14

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14344010	23126369	2335763269	719.28	NSP14_2_IP_S22_L003_R1_001.fastq.gz, SRR14344010, SRR14344010.lite	SRA

SRX10697868 SRP316737 OTHER SINGLE

GSM5268700: NSP15 rep1 IP; Homo sapiens; OTHER

Sample: SRS8787281

BioProject: PRJNA725841

BioSample: SAMN18906585

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Homo sapiens

Sample attributes

source_name: BEAS-2B expressing NSP15

antibody manufacturer: IBA Lifesciences

antibody: 2xStrep tag

adapter: InvRNA3

Original files (1)

BEAS-2B expressing NSP15

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14344011	18973909	1916364809	613.08	nsp15-IP1_S45_L002_R1_001.fastq.gz, SRR14344011, SRR14344011.lite	SRA

SRX10697869 SRP316737 OTHER SINGLE

GSM5268701: NSP15 rep2 IP; Homo sapiens; OTHER

Sample: SRS8787282

BioProject: PRJNA725841

BioSample: SAMN18906458

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Homo sapiens

Sample attributes

source_name: BEAS-2B expressing NSP15

antibody manufacturer: IBA Lifesciences

antibody: 2xStrep tag

adapter: InvRNA4

Original files (1)

BEAS-2B expressing NSP15

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14344012	14385582	1452943782	470.85	nsp15-IP2_S46_L002_R1_001.fastq.gz, SRR14344012, SRR14344012.lite	SRA

SRX10697870 SRP316737 OTHER SINGLE

GSM5268702: NSP16 rep1 IP; Homo sapiens; OTHER

Sample: SRS8787283

BioProject: PRJNA725841

BioSample: SAMN18906457

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Homo sapiens

Sample attributes

source_name: BEAS-2B expressing NSP16

antibody manufacturer: Sigma-Aldrich

antibody: 3XFLAG tag

adapter: InvRNA1

Original files (1)

BEAS-2B expressing NSP16

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14344013	17868160	1357980160	465.33	NSP16-1-IP_S10_L002_R1_001.fastq.gz, SRR14344013, SRR14344013.lite	SRA

SRX10697871 SRP316737 OTHER SINGLE

GSM5268703: NSP16 rep2 IP; Homo sapiens; OTHER

Sample: SRS8787284

BioProject: PRJNA725841

BioSample: SAMN18906456

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Homo sapiens

Sample attributes

source_name: BEAS-2B expressing NSP16

antibody manufacturer: Sigma-Aldrich

antibody: 3XFLAG tag

adapter: InvRNA2

Original files (1)

BEAS-2B expressing NSP16

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14344014	16763660	1274038160	436.77	NSP16-2-IP_S12_L002_R1_001.fastq.gz, SRR14344014, SRR14344014.lite	SRA

SRX10697872 SRP316737 OTHER SINGLE

GSM5268704: SPIKE rep1 IP; Homo sapiens; OTHER

Sample: SRS8787285

BioProject: PRJNA725841

BioSample: SAMN18906455

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Homo sapiens

Sample attributes

source_name: BEAS-2B expressing SPIKE

antibody manufacturer: Sigma-Aldrich

antibody: 3XFLAG tag

adapter: InvRNA3

Original files (1)

BEAS-2B expressing SPIKE

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14344015	32728101	3305538201	1002.8	SPIKE_1_IP_S42_L003_R1_001.fastq.gz, SRR14344015, SRR14344015.lite	SRA

SRX10697873 SRP316737 OTHER SINGLE

GSM5268705: SPIKE rep2 IP; Homo sapiens; OTHER

Sample: SRS8787286

BioProject: PRJNA725841

BioSample: SAMN18906454

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Homo sapiens

Sample attributes

source_name: BEAS-2B expressing SPIKE

antibody manufacturer: Sigma-Aldrich

antibody: 3XFLAG tag

adapter: InvRNA4

Original files (1)

BEAS-2B expressing SPIKE

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14344016	21476115	2169087615	668.72	SPIKE_2_IP_S34_L003_R1_001.fastq.gz, SRR14344016, SRR14344016.lite	SRA

SRX10697874 SRP316737 OTHER SINGLE

GSM5268706: ORF3a rep1 IP; Homo sapiens; OTHER

Sample: SRS8787287

BioProject: PRJNA725841

BioSample: SAMN18906453

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Homo sapiens

Sample attributes

source_name: BEAS-2B expressing ORF3a

antibody manufacturer: IBA Lifesciences

antibody: 2xStrep tag

adapter: InvRNA3

Original files (1)

BEAS-2B expressing ORF3a

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14344017	18258463	1844104763	601.04	ORF3a-IP1_S51_L002_R1_001.fastq.gz, SRR14344017, SRR14344017.lite	SRA

SRX10697875 SRP316737 OTHER SINGLE

GSM5268707: ORF3a rep2 IP; Homo sapiens; OTHER

Sample: SRS8787288

BioProject: PRJNA725841

BioSample: SAMN18906452

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Homo sapiens

Sample attributes

source_name: BEAS-2B expressing ORF3a

antibody manufacturer: IBA Lifesciences

antibody: 2xStrep tag

adapter: InvRNA4

Original files (1)

BEAS-2B expressing ORF3a

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14344018	19533639	1972897539	631.96	ORF3a-IP2_S52_L002_R1_001.fastq.gz, SRR14344018, SRR14344018.lite	SRA

SRX10697876 SRP316737 OTHER SINGLE

GSM5268708: ORF3b rep1 IP; Homo sapiens; OTHER

Sample: SRS8787289

BioProject: PRJNA725841

BioSample: SAMN18906527

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Homo sapiens

Sample attributes

source_name: BEAS-2B expressing ORF3b

antibody manufacturer: Sigma-Aldrich

antibody: 3XFLAG tag

adapter: InvRNA3

Original files (1)

BEAS-2B expressing ORF3b

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14344019	40755527	4116308227	1260.43	orf3b-1-IP_S46_L004_R1_001.fastq.gz, SRR14344019, SRR14344019.lite	SRA

SRX10697877 SRP316737 OTHER SINGLE

GSM5268709: ORF3b rep2 IP; Homo sapiens; OTHER

Sample: SRS8787290

BioProject: PRJNA725841

BioSample: SAMN18906526

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Homo sapiens

Sample attributes

source_name: BEAS-2B expressing ORF3b

antibody manufacturer: Sigma-Aldrich

antibody: 3XFLAG tag

adapter: InvRNA4

Original files (1)

BEAS-2B expressing ORF3b

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14344020	49865426	5036408026	1570.7	orf3b-2-IP_S40_L004_R1_001.fastq.gz, SRR14344020, SRR14344020.lite	SRA

SRX10697878 SRP316737 OTHER SINGLE

GSM5268710: E rep1 IP; Homo sapiens; OTHER

Sample: SRS8787291

BioProject: PRJNA725841

BioSample: SAMN18906583

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Homo sapiens

Sample attributes

source_name: BEAS-2B expressing E

antibody manufacturer: IBA Lifesciences

antibody: 2xStrep tag

adapter: InvRNA3

Original files (1)

BEAS-2B expressing E

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14344021	65157317	6580889017	2102.23	E-IP1_S65_L002_R1_001.fastq.gz, SRR14344021, SRR14344021.lite	SRA

SRX10697879 SRP316737 OTHER SINGLE

GSM5268711: E rep2 IP; Homo sapiens; OTHER

Sample: SRS8787292

BioProject: PRJNA725841

BioSample: SAMN18906582

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Homo sapiens

Sample attributes

source_name: BEAS-2B expressing E

antibody manufacturer: IBA Lifesciences

antibody: 2xStrep tag

adapter: InvRNA4

Original files (1)

BEAS-2B expressing E

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14344022	34246824	3458929224	1095.12	E-IP2_S66_L002_R1_001.fastq.gz, SRR14344022, SRR14344022.lite	SRA

SRX10697880 SRP316737 OTHER SINGLE

GSM5268712: M rep1 IP; Homo sapiens; OTHER

Sample: SRS8787293

BioProject: PRJNA725841

BioSample: SAMN18906581

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Homo sapiens

Sample attributes

source_name: BEAS-2B expressing M

antibody manufacturer: IBA Lifesciences

antibody: 2xStrep tag

adapter: InvRNA1

Original files (1)

BEAS-2B expressing M

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14344023	20383788	2058762588	661.85	M-IP1_S97_L002_R1_001.fastq.gz, SRR14344023, SRR14344023.lite	SRA

SRX10697881 SRP316737 OTHER SINGLE

GSM5268713: M rep2 IP; Homo sapiens; OTHER

Sample: SRS8787294

BioProject: PRJNA725841

BioSample: SAMN18906580

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Homo sapiens

Sample attributes

source_name: BEAS-2B expressing M

antibody manufacturer: IBA Lifesciences

antibody: 2xStrep tag

adapter: InvRNA2

Original files (1)

BEAS-2B expressing M

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14344024	18833440	1902177440	605.69	M-IP2_S98_L002_R1_001.fastq.gz, SRR14344024, SRR14344024.lite	SRA

SRX10697882 SRP316737 OTHER SINGLE

GSM5268714: ORF6 rep1 IP; Homo sapiens; OTHER

Sample: SRS8787295

BioProject: PRJNA725841

BioSample: SAMN18906579

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Homo sapiens

Sample attributes

source_name: BEAS-2B expressing ORF6

antibody manufacturer: IBA Lifesciences

antibody: 2xStrep tag

adapter: InvRNA1

Original files (1)

BEAS-2B expressing ORF6

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14344025	27261565	2753418065	874.8	ORF6-IP1_S67_L002_R1_001.fastq.gz, SRR14344025, SRR14344025.lite	SRA

SRX10697883 SRP316737 OTHER SINGLE

GSM5268715: ORF6 rep2 IP; Homo sapiens; OTHER

Sample: SRS8787296

BioProject: PRJNA725841

BioSample: SAMN18906578

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Homo sapiens

Sample attributes

source_name: BEAS-2B expressing ORF6

antibody manufacturer: IBA Lifesciences

antibody: 2xStrep tag

adapter: InvRNA2

Original files (1)

BEAS-2B expressing ORF6

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14344026	29807340	3010541340	956.53	ORF6-IP2_S68_L002_R1_001.fastq.gz, SRR14344026, SRR14344026.lite	SRA

SRX10697884 SRP316737 OTHER SINGLE

GSM5268716: ORF7a rep1 IP; Homo sapiens; OTHER

Sample: SRS8787297

BioProject: PRJNA725841

BioSample: SAMN18906577

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Homo sapiens

Sample attributes

source_name: BEAS-2B expressing ORF7a

antibody manufacturer: IBA Lifesciences

antibody: 2xStrep tag

adapter: InvRNA3

Original files (1)

BEAS-2B expressing ORF7a

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14344027	18122216	1830343816	590.27	ORF7a-IP1_S101_L002_R1_001.fastq.gz, SRR14344027, SRR14344027.lite	SRA

SRX10697885 SRP316737 OTHER SINGLE

GSM5268717: ORF7a rep2 IP; Homo sapiens; OTHER

Sample: SRS8787298

BioProject: PRJNA725841

BioSample: SAMN18906576

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Homo sapiens

Sample attributes

source_name: BEAS-2B expressing ORF7a

antibody manufacturer: IBA Lifesciences

antibody: 2xStrep tag

adapter: InvRNA4

Original files (1)

BEAS-2B expressing ORF7a

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14344028	23771096	2400880696	774.5	ORF7a-IP2_S102_L002_R1_001.fastq.gz, SRR14344028, SRR14344028.lite	SRA

SRX10697886 SRP316737 OTHER SINGLE

GSM5268718: ORF7b rep1 IP; Homo sapiens; OTHER

Sample: SRS8787299

BioProject: PRJNA725841

BioSample: SAMN18906575

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Homo sapiens

Sample attributes

source_name: BEAS-2B expressing ORF7b

antibody manufacturer: Sigma-Aldrich

antibody: 3XFLAG tag

adapter: InvRNA1

Original files (1)

BEAS-2B expressing ORF7b

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14344029	48631215	4911752715	1532.59	orf7b-1-IP_S52_L004_R1_001.fastq.gz, SRR14344029, SRR14344029.lite	SRA

SRX10697887 SRP316737 OTHER SINGLE

GSM5268719: ORF7b rep2 IP; Homo sapiens; OTHER

Sample: SRS8787300

BioProject: PRJNA725841

BioSample: SAMN18906574

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Homo sapiens

Sample attributes

source_name: BEAS-2B expressing ORF7b

antibody manufacturer: Sigma-Aldrich

antibody: 3XFLAG tag

adapter: InvRNA2

Original files (1)

BEAS-2B expressing ORF7b

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14344030	53520083	5405528383	1688.65	orf7b-2-IP_S38_L004_R1_001.fastq.gz, SRR14344030, SRR14344030.lite	SRA

SRX10697888 SRP316737 OTHER SINGLE

GSM5268720: ORF8 rep1 IP; Homo sapiens; OTHER

Sample: SRS8787301

BioProject: PRJNA725841

BioSample: SAMN18906573

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Homo sapiens

Sample attributes

source_name: BEAS-2B expressing ORF8

antibody manufacturer: Sigma-Aldrich

antibody: 3XFLAG tag

adapter: InvRNA3

Original files (1)

BEAS-2B expressing ORF8

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14344031	50137478	5063885278	1627.3	orf8-1-IP_S57_L004_R1_001.fastq.gz, SRR14344031, SRR14344031.lite	SRA

SRX10697889 SRP316737 OTHER SINGLE

GSM5268721: ORF8 rep2 IP; Homo sapiens; OTHER

Sample: SRS8787302

BioProject: PRJNA725841

BioSample: SAMN18906572

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Homo sapiens

Sample attributes

source_name: BEAS-2B expressing ORF8

antibody manufacturer: Sigma-Aldrich

antibody: 3XFLAG tag

adapter: InvRNA4

Original files (1)

BEAS-2B expressing ORF8

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14344032	45917786	4637696386	1525.04	orf8-2-IP_S55_L004_R1_001.fastq.gz, SRR14344032, SRR14344032.lite	SRA

SRX10697890 SRP316737 OTHER SINGLE

GSM5268722: N rep1 IP; Homo sapiens; OTHER

Sample: SRS8787303

BioProject: PRJNA725841

BioSample: SAMN18906571

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Homo sapiens

Sample attributes

source_name: BEAS-2B expressing N

antibody manufacturer: IBA Lifesciences

antibody: 2xStrep tag

adapter: InvRNA1

Original files (1)

BEAS-2B expressing N

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14344033	14550551	1469605651	474.74	N-IP1_S75_L002_R1_001.fastq.gz, SRR14344033, SRR14344033.lite	SRA

SRX10697891 SRP316737 OTHER SINGLE

GSM5268723: N rep2 IP; Homo sapiens; OTHER

Sample: SRS8787304

BioProject: PRJNA725841

BioSample: SAMN18906570

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Homo sapiens

Sample attributes

source_name: BEAS-2B expressing N

antibody manufacturer: IBA Lifesciences

antibody: 2xStrep tag

adapter: InvRNA2

Original files (1)

BEAS-2B expressing N

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14344034	24802594	2505061994	798.61	N-IP2_S77_L002_R1_001.fastq.gz, SRR14344034, SRR14344034.lite	SRA

SRX10697892 SRP316737 OTHER SINGLE

GSM5268724: ORF9b rep1 IP; Homo sapiens; OTHER

Sample: SRS8787305

BioProject: PRJNA725841

BioSample: SAMN18906569

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Homo sapiens

Sample attributes

source_name: BEAS-2B expressing ORF9b

antibody manufacturer: Sigma-Aldrich

antibody: 3XFLAG tag

adapter: InvRNA3

Original files (1)

BEAS-2B expressing ORF9b

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14344035	38449216	3883370816	1220.77	orf9b-1-IP_S54_L004_R1_001.fastq.gz, SRR14344035, SRR14344035.lite	SRA

SRX10697893 SRP316737 OTHER SINGLE

GSM5268725: ORF9b rep2 IP; Homo sapiens; OTHER

Sample: SRS8787306

BioProject: PRJNA725841

BioSample: SAMN18906507

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Homo sapiens

Sample attributes

source_name: BEAS-2B expressing ORF9b

antibody manufacturer: Sigma-Aldrich

antibody: 3XFLAG tag

adapter: InvRNA4

Original files (1)

BEAS-2B expressing ORF9b

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14344036	104483147	10552797847	3234.68	orf9b-2-IP_S41_L004_R1_001.fastq.gz, SRR14344036, SRR14344036.lite	SRA

SRX10697894 SRP316737 OTHER SINGLE

GSM5268726: ORF9c rep1 IP; Homo sapiens; OTHER

Sample: SRS8787308

BioProject: PRJNA725841

BioSample: SAMN18906506

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Homo sapiens

Sample attributes

source_name: BEAS-2B expressing ORF9c

antibody manufacturer: Sigma-Aldrich

antibody: 3XFLAG tag

adapter: InvRNA1

Original files (1)

BEAS-2B expressing ORF9c

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14344037	53068632	5359931832	1661.98	orf9c-1-IP_S34_L004_R1_001.fastq.gz, SRR14344037, SRR14344037.lite	SRA

SRX10697895 SRP316737 OTHER SINGLE

GSM5268727: ORF9c rep2 IP; Homo sapiens; OTHER

Sample: SRS8787307

BioProject: PRJNA725841

BioSample: SAMN18906505

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Homo sapiens

Sample attributes

source_name: BEAS-2B expressing ORF9c

antibody manufacturer: Sigma-Aldrich

antibody: 3XFLAG tag

adapter: InvRNA2

Original files (1)

BEAS-2B expressing ORF9c

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14344038	59497435	6009240935	1884.04	orf9c-2-IP_S53_L004_R1_001.fastq.gz, SRR14344038, SRR14344038.lite	SRA

SRX10697896 SRP316737 OTHER SINGLE

GSM5268728: ORF10 rep1 IP; Homo sapiens; OTHER

Sample: SRS8787309

BioProject: PRJNA725841

BioSample: SAMN18906504

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Homo sapiens

Sample attributes

source_name: BEAS-2B expressing ORF10

antibody manufacturer: Sigma-Aldrich

antibody: 3XFLAG tag

adapter: InvRNA3

Original files (1)

BEAS-2B expressing ORF10

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14344039	21703092	2192012292	673.35	ORF10_1_IP_S48_L003_R1_001.fastq.gz, SRR14344039, SRR14344039.lite	SRA

SRX10697897 SRP316737 OTHER SINGLE

GSM5268729: ORF10 rep2 IP; Homo sapiens; OTHER

Sample: SRS8787310

BioProject: PRJNA725841

BioSample: SAMN18906503

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Homo sapiens

Sample attributes

source_name: BEAS-2B expressing ORF10

antibody manufacturer: Sigma-Aldrich

antibody: 3XFLAG tag

adapter: InvRNA4

Original files (1)

BEAS-2B expressing ORF10

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14344040	23795306	2403325906	762.78	ORF10_2_IP_S41_L003_R1_001.fastq.gz, SRR14344040, SRR14344040.lite	SRA

SRX10697898 SRP316737 OTHER SINGLE

GSM5268730: WT_Strep_HMW rep1 IP; Homo sapiens; OTHER

Sample: SRS8787311

BioProject: PRJNA725841

BioSample: SAMN18906502

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Homo sapiens

Sample attributes

source_name: BEAS-2B

antibody manufacturer: IBA Lifesciences

antibody: 2xStrep tag

adapter: InvRNA1

Original files (1)

BEAS-2B

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14344041	26831184	2709949584	884.28	WT-high-IP1_S71_L002_R1_001.fastq.gz, SRR14344041, SRR14344041.lite	SRA

SRX10697899 SRP316737 OTHER SINGLE

GSM5268731: WT_Strep_HMW rep2 IP; Homo sapiens; OTHER

Sample: SRS8787312

BioProject: PRJNA725841

BioSample: SAMN18906501

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Homo sapiens

Sample attributes

source_name: BEAS-2B

antibody manufacturer: IBA Lifesciences

antibody: 2xStrep tag

adapter: InvRNA2

Original files (1)

BEAS-2B

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14344042	12563597	1268923297	407.57	nsp8-IP2_S57_L002_R1_001.fastq.InvRNA2.fq.gz, SRR14344042, SRR1434404…	SRA

SRX10697900 SRP316737 OTHER SINGLE

GSM5268732: WT_Strep_LMW rep1 IP; Homo sapiens; OTHER

Sample: SRS8787314

BioProject: PRJNA725841

BioSample: SAMN18906500

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Homo sapiens

Sample attributes

source_name: BEAS-2B

antibody manufacturer: IBA Lifesciences

antibody: 2xStrep tag

adapter: InvRNA3

Original files (1)

BEAS-2B

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14344043	32586961	3291283061	1039.17	WT-low-IP1_S69_L002_R1_001.fastq.gz, SRR14344043, SRR14344043.lite	SRA

SRX10697901 SRP316737 OTHER SINGLE

GSM5268733: WT_Strep_LMW rep2 IP; Homo sapiens; OTHER

Sample: SRS8787313

BioProject: PRJNA725841

BioSample: SAMN18906499

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Homo sapiens

Sample attributes

source_name: BEAS-2B

antibody manufacturer: IBA Lifesciences

antibody: 2xStrep tag

adapter: InvRNA4

Original files (1)

BEAS-2B

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14344044	34681441	3502825541	1116.73	WT-low-IP2_S70_L002_R1_001.fastq.gz, SRR14344044, SRR14344044.lite	SRA

SRX10697902 SRP316737 OTHER SINGLE

GSM5268734: WT_FLAG_HMW rep1 IP; Homo sapiens; OTHER

Sample: SRS8787315

BioProject: PRJNA725841

BioSample: SAMN18906498

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Homo sapiens

Sample attributes

source_name: BEAS-2B

antibody manufacturer: Sigma-Aldrich

antibody: 3XFLAG tag

adapter: InvRNA1

Original files (1)

BEAS-2B

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14344045	22139369	2236076269	689.17	WTH_1_IP_S30_L003_R1_001.fastq.gz, SRR14344045, SRR14344045.lite	SRA

SRX10697903 SRP316737 OTHER SINGLE

GSM5268735: WT_FLAG_HMW rep2 IP; Homo sapiens; OTHER

Sample: SRS8787316

BioProject: PRJNA725841

BioSample: SAMN18906497

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Homo sapiens

Sample attributes

source_name: BEAS-2B

antibody manufacturer: Sigma-Aldrich

antibody: 3XFLAG tag

adapter: InvRNA2

Original files (1)

BEAS-2B

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14344046	14429571	1457386671	447.45	WTH_2_IP_S24_L003_R1_001.fastq.gz, SRR14344046, SRR14344046.lite	SRA

SRX10697904 SRP316737 OTHER SINGLE

GSM5268736: WT_FLAG_LMW rep1 IP; Homo sapiens; OTHER

Sample: SRS8787317

BioProject: PRJNA725841

BioSample: SAMN18906496

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Homo sapiens

Sample attributes

source_name: BEAS-2B

antibody manufacturer: Sigma-Aldrich

antibody: 3XFLAG tag

adapter: InvRNA1

Original files (1)

BEAS-2B

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14344047	12566877	1269254577	393.35	WTL_1_IP_S11_L003_R1_001.fastq.gz, SRR14344047, SRR14344047.lite	SRA

SRX10697905 SRP316737 OTHER SINGLE

GSM5268737: WT_FLAG_LMW rep2 IP; Homo sapiens; OTHER

Sample: SRS8787318

BioProject: PRJNA725841

BioSample: SAMN18906495

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Homo sapiens

Sample attributes

source_name: BEAS-2B

antibody manufacturer: Sigma-Aldrich

antibody: 3XFLAG tag

adapter: InvRNA2

Original files (1)

BEAS-2B

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14344048	21943760	2216319760	686.77	WTL_2_IP_S21_L003_R1_001.fastq.gz, SRR14344048, SRR14344048.lite	SRA

SRX10697906 SRP316737 OTHER SINGLE

GSM5268738: Vero_N rep1 IP; Chlorocebus sabaeus; OTHER

Sample: SRS8787319

BioProject: PRJNA725841

BioSample: SAMN18906494

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Chlorocebus sabaeus

Sample attributes

source_name: Vero E6 cells infected with SARS-CoV-2

antibody manufacturer: Sino Biological

antibody: None

adapter: InvRNA2

Original files (1)

Vero E6 cells infected with SARS-CoV-2

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14344049	44624755	4507100255	1635.05	Vero_N-1-IP_S5_L001_R1_001.fastq.gz, SRR14344049, SRR14344049.lite	SRA

SRX10697907 SRP316737 OTHER SINGLE

GSM5268739: Vero_N rep2 IP; Chlorocebus sabaeus; OTHER

Sample: SRS8787320

BioProject: PRJNA725841

BioSample: SAMN18906558

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Chlorocebus sabaeus

Sample attributes

source_name: Vero E6 cells infected with SARS-CoV-2

antibody manufacturer: Sino Biological

antibody: None

adapter: InvRNA2

Original files (1)

Vero E6 cells infected with SARS-CoV-2

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14344050	50801065	5130907565	1851.59	Vero_N-2-IP_S6_L001_R1_001.fastq.gz, SRR14344050, SRR14344050.lite	SRA

SRX10697908 SRP316737 OTHER SINGLE

GSM5268740: Vero_NSP8 rep1 IP; Chlorocebus sabaeus; OTHER

Sample: SRS8787321

BioProject: PRJNA725841

BioSample: SAMN18906557

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Chlorocebus sabaeus

Sample attributes

source_name: Vero E6 cells infected with SARS-CoV-2

antibody manufacturer: GeneTex

antibody: None

adapter: InvRNA2

Original files (1)

Vero E6 cells infected with SARS-CoV-2

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14344051	62084120	6270496120	2278.13	Vero_NSP8-1-IP_S1_L001_R1_001.fastq.gz, SRR14344051, SRR14344051.lite	SRA

SRX10697909 SRP316737 OTHER SINGLE

GSM5268741: Vero_NSP8 rep2 IP; Chlorocebus sabaeus; OTHER

Sample: SRS8787322

BioProject: PRJNA725841

BioSample: SAMN18906556

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Chlorocebus sabaeus

Sample attributes

source_name: Vero E6 cells infected with SARS-CoV-2

antibody manufacturer: GeneTex

antibody: None

adapter: InvRNA2

Original files (1)

Vero E6 cells infected with SARS-CoV-2

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14344052	60549891	6115538991	2245.46	Vero_NSP12-1-IP_S3_L001_R1_001.fastq.gz, SRR14344052, SRR14344052.lite	SRA

SRX10697910 SRP316737 OTHER SINGLE

GSM5268742: Vero_NSP12 rep1 IP; Chlorocebus sabaeus; OTHER

Sample: SRS8787323

BioProject: PRJNA725841

BioSample: SAMN18906555

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Chlorocebus sabaeus

Sample attributes

source_name: Vero E6 cells infected with SARS-CoV-2

antibody manufacturer: GeneTex

antibody: None

adapter: InvRNA2

Original files (1)

Vero E6 cells infected with SARS-CoV-2

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14344053	90484647	9138949347	3277.48	Vero_NSP8-2-IP_S2_L001_R1_001.fastq.gz, SRR14344053, SRR14344053.lite	SRA

SRX10697911 SRP316737 OTHER SINGLE

GSM5268743: Vero_NSP12 rep2 IP; Chlorocebus sabaeus; OTHER

Sample: SRS8787324

BioProject: PRJNA725841

BioSample: SAMN18906554

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Chlorocebus sabaeus

Sample attributes

source_name: Vero E6 cells infected with SARS-CoV-2

antibody manufacturer: GeneTex

antibody: None

adapter: InvRNA2

Original files (1)

Vero E6 cells infected with SARS-CoV-2

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14344054	51824065	5234230565	1897.17	Vero_NSP12-2-IP_S4_L001_R1_001.fastq.gz, SRR14344054, SRR14344054.lite	SRA

SRX10697912 SRP316737 OTHER SINGLE

GSM5268744: NSP1 rep1 input; Homo sapiens; OTHER

Sample: SRS8787325

BioProject: PRJNA725841

BioSample: SAMN18906553

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Homo sapiens

Sample attributes

source_name: BEAS-2B expressing NSP1

antibody manufacturer: Sigma-Aldrich

antibody: 3XFLAG tag

adapter: InvRiL19

Original files (1)

BEAS-2B expressing NSP1

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14344055	12988065	987092940	343.2	NSP1-1-IN_S1_L002_R1_001.fastq.gz, SRR14344055, SRR14344055.lite	SRA

SRX10697913 SRP316737 OTHER SINGLE

GSM5268745: NSP2 rep1 input; Homo sapiens; OTHER

Sample: SRS8787326

BioProject: PRJNA725841

BioSample: SAMN18906552

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Homo sapiens

Sample attributes

source_name: BEAS-2B expressing NSP2

antibody manufacturer: IBA Lifesciences

antibody: 2xStrep tag

adapter: InvRiL19

Original files (1)

BEAS-2B expressing NSP2

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14344056	58628035	5921431535	1829.56	nsp2-1-IN_S3_L004_R1_001.fastq.gz, SRR14344056, SRR14344056.lite	SRA

SRX10697914 SRP316737 OTHER SINGLE

GSM5268746: NSP2 rep2 input; Homo sapiens; OTHER

Sample: SRS8787327

BioProject: PRJNA725841

BioSample: SAMN18906551

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Homo sapiens

Sample attributes

source_name: BEAS-2B expressing NSP2

antibody manufacturer: IBA Lifesciences

antibody: 2xStrep tag

adapter: InvRiL19

Original files (1)

BEAS-2B expressing NSP2

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14344057	56244033	5680647333	1769.23	nsp2-2-IN_S4_L004_R1_001.fastq.gz, SRR14344057, SRR14344057.lite	SRA

SRX10697915 SRP316737 OTHER SINGLE

GSM5268747: NSP3 rep1 input; Homo sapiens; OTHER

Sample: SRS8787328

BioProject: PRJNA725841

BioSample: SAMN18906550

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Homo sapiens

Sample attributes

source_name: BEAS-2B expressing NSP3

antibody manufacturer: Sigma-Aldrich

antibody: 3XFLAG tag

adapter: InvRiL19

Original files (1)

BEAS-2B expressing NSP3

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14344058	58931982	5952130182	1834.72	nsp3-1-IN_S5_L004_R1_001.fastq.gz, SRR14344058, SRR14344058.lite	SRA

SRX10697916 SRP316737 OTHER SINGLE

GSM5268748: NSP3 rep2 input; Homo sapiens; OTHER

Sample: SRS8787329

BioProject: PRJNA725841

BioSample: SAMN18906549

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Homo sapiens

Sample attributes

source_name: BEAS-2B expressing NSP3

antibody manufacturer: Sigma-Aldrich

antibody: 3XFLAG tag

adapter: InvRiL19

Original files (1)

BEAS-2B expressing NSP3

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14344059	58785238	5937309038	1838.12	nsp3-2-IN_S6_L004_R1_001.fastq.gz, SRR14344059, SRR14344059.lite	SRA

SRX10697917 SRP316737 OTHER SINGLE

GSM5268749: NSP4 rep1 input; Homo sapiens; OTHER

Sample: SRS8787330

BioProject: PRJNA725841

BioSample: SAMN18906548

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Homo sapiens

Sample attributes

source_name: BEAS-2B expressing NSP4

antibody manufacturer: Sigma-Aldrich

antibody: 3XFLAG tag

adapter: InvRiL19

Original files (1)

BEAS-2B expressing NSP4

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14344060	23944096	2418353696	743.17	NSP4_1_IN_S5_L003_R1_001.fastq.gz, SRR14344060, SRR14344060.lite	SRA

SRX10697918 SRP316737 OTHER SINGLE

GSM5268750: NSP4 rep2 input; Homo sapiens; OTHER

Sample: SRS8787331

BioProject: PRJNA725841

BioSample: SAMN18906547

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Homo sapiens

Sample attributes

source_name: BEAS-2B expressing NSP4

antibody manufacturer: Sigma-Aldrich

antibody: 3XFLAG tag

adapter: InvRiL19

Original files (1)

BEAS-2B expressing NSP4

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14344061	23320589	2355379489	731.26	NSP4_2_iN_S4_L003_R1_001.fastq.gz, SRR14344061, SRR14344061.lite	SRA

SRX10697919 SRP316737 OTHER SINGLE

GSM5268751: NSP5 rep1 input; Homo sapiens; OTHER

Sample: SRS8787332

BioProject: PRJNA725841

BioSample: SAMN18906546

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Homo sapiens

Sample attributes

source_name: BEAS-2B expressing NSP5

antibody manufacturer: Sigma-Aldrich

antibody: 3XFLAG tag

adapter: InvRiL19

Original files (1)

BEAS-2B expressing NSP5

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14344062	37617791	3799396891	1170.63	nsp5-1-IN_S20_L004_R1_001.fastq.gz, SRR14344062, SRR14344062.lite	SRA

SRX10697920 SRP316737 OTHER SINGLE

GSM5268752: NSP5 rep2 input; Homo sapiens; OTHER

Sample: SRS8787333

BioProject: PRJNA725841

BioSample: SAMN18906545

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Homo sapiens

Sample attributes

source_name: BEAS-2B expressing NSP5

antibody manufacturer: Sigma-Aldrich

antibody: 3XFLAG tag

adapter: InvRiL19

Original files (1)

BEAS-2B expressing NSP5

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14344063	61788274	6240615674	1925.59	nsp5-2-IN_S17_L004_R1_001.fastq.gz, SRR14344063, SRR14344063.lite	SRA

SRX10697921 SRP316737 OTHER SINGLE

GSM5268753: NSP5_C145A rep1 input; Homo sapiens; OTHER

Sample: SRS8787334

BioProject: PRJNA725841

BioSample: SAMN18906544

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Homo sapiens

Sample attributes

source_name: BEAS-2B expressing NSP5_C145A

antibody manufacturer: IBA Lifesciences

antibody: 2xStrep tag

adapter: InvRiL19

Original files (1)

BEAS-2B expressing NSP5_C145A

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14344064	17440168	1761456968	557.58	nsp5_C145A-IN1_S47_L002_R1_001.fastq.gz, SRR14344064, SRR14344064.lite	SRA

SRX10697922 SRP316737 OTHER SINGLE

GSM5268754: NSP5_C145A rep2 input; Homo sapiens; OTHER

Sample: SRS8787335

BioProject: PRJNA725841

BioSample: SAMN18906543

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Homo sapiens

Sample attributes

source_name: BEAS-2B expressing NSP5_C145A

antibody manufacturer: IBA Lifesciences

antibody: 2xStrep tag

adapter: InvRiL19

Original files (1)

BEAS-2B expressing NSP5_C145A

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14344065	19787179	1998505079	627.98	nsp5_C145A-IN2_S49_L002_R1_001.fastq.gz, SRR14344065, SRR14344065.lite	SRA

SRX10697923 SRP316737 OTHER SINGLE

GSM5268755: NSP6 rep1 input; Homo sapiens; OTHER

Sample: SRS8787336

BioProject: PRJNA725841

BioSample: SAMN18906490

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Homo sapiens

Sample attributes

source_name: BEAS-2B expressing NSP6

antibody manufacturer: Sigma-Aldrich

antibody: 3XFLAG tag

adapter: InvRiL19

Original files (1)

BEAS-2B expressing NSP6

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14344066	51105469	5161652369	1590.74	nsp6-1-IN_S2_L004_R1_001.fastq.gz, SRR14344066, SRR14344066.lite	SRA

SRX10697924 SRP316737 OTHER SINGLE

GSM5268756: NSP6 rep2 input; Homo sapiens; OTHER

Sample: SRS8787337

BioProject: PRJNA725841

BioSample: SAMN18906489

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Homo sapiens

Sample attributes

source_name: BEAS-2B expressing NSP6

antibody manufacturer: Sigma-Aldrich

antibody: 3XFLAG tag

adapter: InvRiL19

Original files (1)

BEAS-2B expressing NSP6

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14344067	55005101	5555515201	1708.52	nsp6-2-IN_S1_L004_R1_001.fastq.gz, SRR14344067, SRR14344067.lite	SRA

SRX10697925 SRP316737 OTHER SINGLE

GSM5268757: NSP7 rep1 input; Homo sapiens; OTHER

Sample: SRS8787338

BioProject: PRJNA725841

BioSample: SAMN18906488

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Homo sapiens

Sample attributes

source_name: BEAS-2B expressing NSP7

antibody manufacturer: Sigma-Aldrich

antibody: 3XFLAG tag

adapter: InvRiL19

Original files (1)

BEAS-2B expressing NSP7

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14344068	31085666	3139652266	968.5	nsp7-1-IN_S13_L004_R1_001.fastq.gz, SRR14344068, SRR14344068.lite	SRA

SRX10697926 SRP316737 OTHER SINGLE

GSM5268758: NSP7 rep2 input; Homo sapiens; OTHER

Sample: SRS8787339

BioProject: PRJNA725841

BioSample: SAMN18906483

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Homo sapiens

Sample attributes

source_name: BEAS-2B expressing NSP7

antibody manufacturer: Sigma-Aldrich

antibody: 3XFLAG tag

adapter: InvRiL19

Original files (1)

BEAS-2B expressing NSP7

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14344069	57534361	5810970461	1796.08	nsp7-2-IN_S14_L004_R1_001.fastq.gz, SRR14344069, SRR14344069.lite	SRA

SRX10697927 SRP316737 OTHER SINGLE

GSM5268759: NSP8 rep1 input; Homo sapiens; OTHER

Sample: SRS8787340

BioProject: PRJNA725841

BioSample: SAMN18906482

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Homo sapiens

Sample attributes

source_name: BEAS-2B expressing NSP8

antibody manufacturer: Sigma-Aldrich

antibody: 3XFLAG tag

adapter: InvRiL19

Original files (1)

BEAS-2B expressing NSP8

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14344070	20889525	2109842025	649.7	NSP8_1_IN_S35_L003_R1_001.fastq.gz, SRR14344070, SRR14344070.lite	SRA

SRX10697928 SRP316737 OTHER SINGLE

GSM5268760: NSP8 rep2 input; Homo sapiens; OTHER

Sample: SRS8787341

BioProject: PRJNA725841

BioSample: SAMN18906487

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Homo sapiens

Sample attributes

source_name: BEAS-2B expressing NSP8

antibody manufacturer: Sigma-Aldrich

antibody: 3XFLAG tag

adapter: InvRiL19

Original files (1)

BEAS-2B expressing NSP8

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14344071	24408754	2465284154	757.65	NSP8_2_iN_S33_L003_R1_001.fastq.gz, SRR14344071, SRR14344071.lite	SRA

SRX10697929 SRP316737 OTHER SINGLE

GSM5268761: NSP9 rep1 input; Homo sapiens; OTHER

Sample: SRS8787342

BioProject: PRJNA725841

BioSample: SAMN18906486

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Homo sapiens

Sample attributes

source_name: BEAS-2B expressing NSP9

antibody manufacturer: IBA Lifesciences

antibody: 2xStrep tag

adapter: InvRiL19

Original files (1)

BEAS-2B expressing NSP9

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14344072	31190911	3150282011	958.0	nsp9-1-IN_S5_L001_R1_001.fastq.gz, SRR14344072, SRR14344072.lite	SRA

SRX10697930 SRP316737 OTHER SINGLE

GSM5268762: NSP9 rep2 input; Homo sapiens; OTHER

Sample: SRS8787343

BioProject: PRJNA725841

BioSample: SAMN18906485

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Homo sapiens

Sample attributes

source_name: BEAS-2B expressing NSP9

antibody manufacturer: IBA Lifesciences

antibody: 2xStrep tag

adapter: InvRiL19

Original files (1)

BEAS-2B expressing NSP9

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14344073	27921139	2820035039	872.26	nsp9-2-IN_S4_L001_R1_001.fastq.gz, SRR14344073, SRR14344073.lite	SRA

SRX10697931 SRP316737 OTHER SINGLE

GSM5268763: NSP10 rep1 input; Homo sapiens; OTHER

Sample: SRS8787344

BioProject: PRJNA725841

BioSample: SAMN18906484

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Homo sapiens

Sample attributes

source_name: BEAS-2B expressing NSP10

antibody manufacturer: IBA Lifesciences

antibody: 2xStrep tag

adapter: InvRiL19

Original files (1)

BEAS-2B expressing NSP10

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14344074	34686264	3503312664	1092.73	nsp10-IN1_S64_L002_R1_001.fastq.gz, SRR14344074, SRR14344074.lite	SRA

SRX10697932 SRP316737 OTHER SINGLE

GSM5268764: NSP10 rep2 input; Homo sapiens; OTHER

Sample: SRS8787345

BioProject: PRJNA725841

BioSample: SAMN18906481

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Homo sapiens

Sample attributes

source_name: BEAS-2B expressing NSP10

antibody manufacturer: IBA Lifesciences

antibody: 2xStrep tag

adapter: InvRiL19

Original files (1)

BEAS-2B expressing NSP10

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14344075	23669454	2390614854	743.91	nsp10-IN1__S63_L002_R1_001.fastq.gz, SRR14344075, SRR14344075.lite	SRA

SRX10697933 SRP316737 OTHER SINGLE

GSM5268765: NSP11 rep1 input; Homo sapiens; OTHER

Sample: SRS8787346

BioProject: PRJNA725841

BioSample: SAMN18906480

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Homo sapiens

Sample attributes

source_name: BEAS-2B expressing NSP11

antibody manufacturer: Sigma-Aldrich

antibody: 3XFLAG tag

adapter: InvRiL19

Original files (1)

BEAS-2B expressing NSP11

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14344076	13542886	1029259336	407.0	Nsp11-1-IN_S28_L007_R1_001.fastq.gz, SRR14344076, SRR14344076.lite	SRA

SRX10697934 SRP316737 OTHER SINGLE

GSM5268766: NSP11 rep2 input; Homo sapiens; OTHER

Sample: SRS8787347

BioProject: PRJNA725841

BioSample: SAMN18906479

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Homo sapiens

Sample attributes

source_name: BEAS-2B expressing NSP11

antibody manufacturer: Sigma-Aldrich

antibody: 3XFLAG tag

adapter: InvRiL19

Original files (1)

BEAS-2B expressing NSP11

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14344077	26506732	2677179932	847.02	NSP11_2_iN_S18_L003_R1_001.fastq.gz, SRR14344077, SRR14344077.lite	SRA

SRX10697935 SRP316737 OTHER SINGLE

GSM5268767: NSP12 rep1 input; Homo sapiens; OTHER

Sample: SRS8787348

BioProject: PRJNA725841

BioSample: SAMN18906478

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Homo sapiens

Sample attributes

source_name: BEAS-2B expressing NSP12

antibody manufacturer: Sigma-Aldrich

antibody: 3XFLAG tag

adapter: InvRiL19

Original files (1)

BEAS-2B expressing NSP12

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14344078	62050122	6267062322	1939.49	nsp12-1-IN_S24_L004_R1_001.fastq.gz, SRR14344078, SRR14344078.lite	SRA

SRX10697936 SRP316737 OTHER SINGLE

GSM5268768: NSP12 rep2 input; Homo sapiens; OTHER

Sample: SRS8787349

BioProject: PRJNA725841

BioSample: SAMN18906477

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Homo sapiens

Sample attributes

source_name: BEAS-2B expressing NSP12

antibody manufacturer: Sigma-Aldrich

antibody: 3XFLAG tag

adapter: InvRiL19

Original files (1)

BEAS-2B expressing NSP12

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14344079	86156387	8701795087	2710.36	nsp12-2-IN_S26_L004_R1_001.fastq.gz, SRR14344079, SRR14344079.lite	SRA

SRX10697937 SRP316737 OTHER SINGLE

GSM5268769: NSP13 rep1 input; Homo sapiens; OTHER

Sample: SRS8787350

BioProject: PRJNA725841

BioSample: SAMN18906476

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Homo sapiens

Sample attributes

source_name: BEAS-2B expressing NSP13

antibody manufacturer: Sigma-Aldrich

antibody: 3XFLAG tag

adapter: InvRiL19

Original files (1)

BEAS-2B expressing NSP13

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14344080	26310236	2657333836	811.0	NSP13_1_IN_S36_L003_R1_001.fastq.gz, SRR14344080, SRR14344080.lite	SRA

SRX10697938 SRP316737 OTHER SINGLE

GSM5268770: NSP13 rep2 input; Homo sapiens; OTHER

Sample: SRS8787351

BioProject: PRJNA725841

BioSample: SAMN18906475

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Homo sapiens

Sample attributes

source_name: BEAS-2B expressing NSP13

antibody manufacturer: Sigma-Aldrich

antibody: 3XFLAG tag

adapter: InvRiL19

Original files (1)

BEAS-2B expressing NSP13

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14344081	12833952	975380352	388.5	Nsp13-2-IN_S29_L007_R1_001.fastq.gz, SRR14344081, SRR14344081.lite	SRA

SRX10697939 SRP316737 OTHER SINGLE

GSM5268771: NSP14 rep1 input; Homo sapiens; OTHER

Sample: SRS8787352

BioProject: PRJNA725841

BioSample: SAMN18906474

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Homo sapiens

Sample attributes

source_name: BEAS-2B expressing NSP14

antibody manufacturer: Sigma-Aldrich

antibody: 3XFLAG tag

adapter: InvRiL19

Original files (1)

BEAS-2B expressing NSP14

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14344082	23198651	2343063751	717.5	NSP14_1_IN_S2_L003_R1_001.fastq.gz, SRR14344082, SRR14344082.lite	SRA

SRX10697940 SRP316737 OTHER SINGLE

GSM5268772: NSP14 rep2 input; Homo sapiens; OTHER

Sample: SRS8787354

BioProject: PRJNA725841

BioSample: SAMN18906473

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Homo sapiens

Sample attributes

source_name: BEAS-2B expressing NSP14

antibody manufacturer: Sigma-Aldrich

antibody: 3XFLAG tag

adapter: InvRiL19

Original files (1)

BEAS-2B expressing NSP14

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14344083	26002352	2626237552	810.48	NSP14_2_iN_S3_L003_R1_001.fastq.gz, SRR14344083, SRR14344083.lite	SRA

SRX10697941 SRP316737 OTHER SINGLE

GSM5268773: NSP15 rep1 input; Homo sapiens; OTHER

Sample: SRS8787353

BioProject: PRJNA725841

BioSample: SAMN18906472

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Homo sapiens

Sample attributes

source_name: BEAS-2B expressing NSP15

antibody manufacturer: IBA Lifesciences

antibody: 2xStrep tag

adapter: InvRiL19

Original files (1)

BEAS-2B expressing NSP15

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14344084	9380088	947388888	307.08	nsp15-IN1_S78_L002_R1_001.fastq.gz, SRR14344084, SRR14344084.lite	SRA

SRX10697942 SRP316737 OTHER SINGLE

GSM5268774: NSP15 rep2 input; Homo sapiens; OTHER

Sample: SRS8787356

BioProject: PRJNA725841

BioSample: SAMN18906471

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Homo sapiens

Sample attributes

source_name: BEAS-2B expressing NSP15

antibody manufacturer: IBA Lifesciences

antibody: 2xStrep tag

adapter: InvRiL19

Original files (1)

BEAS-2B expressing NSP15

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14344085	20433221	2063755321	673.12	nsp15-IN2_S79_L002_R1_001.fastq.gz, SRR14344085, SRR14344085.lite	SRA

SRX10697943 SRP316737 OTHER SINGLE

GSM5268775: NSP16 rep1 input; Homo sapiens; OTHER

Sample: SRS8787355

BioProject: PRJNA725841

BioSample: SAMN18906470

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Homo sapiens

Sample attributes

source_name: BEAS-2B expressing NSP16

antibody manufacturer: Sigma-Aldrich

antibody: 3XFLAG tag

adapter: InvRiL19

Original files (1)

BEAS-2B expressing NSP16

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14344086	16726854	1271240904	442.01	NSP16-1-IN_S9_L002_R1_001.fastq.gz, SRR14344086, SRR14344086.lite	SRA

SRX10697944 SRP316737 OTHER SINGLE

GSM5268776: NSP16 rep2 input; Homo sapiens; OTHER

Sample: SRS8787358

BioProject: PRJNA725841

BioSample: SAMN18906469

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Homo sapiens

Sample attributes

source_name: BEAS-2B expressing NSP16

antibody manufacturer: Sigma-Aldrich

antibody: 3XFLAG tag

adapter: InvRiL19

Original files (1)

BEAS-2B expressing NSP16

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14344087	14755665	1121430540	389.8	NSP16-2-IN_S11_L002_R1_001.fastq.gz, SRR14344087, SRR14344087.lite	SRA

SRX10697945 SRP316737 OTHER SINGLE

GSM5268777: SPIKE rep1 input; Homo sapiens; OTHER

Sample: SRS8787357

BioProject: PRJNA725841

BioSample: SAMN18906468

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Homo sapiens

Sample attributes

source_name: BEAS-2B expressing SPIKE

antibody manufacturer: Sigma-Aldrich

antibody: 3XFLAG tag

adapter: InvRiL19

Original files (1)

BEAS-2B expressing SPIKE

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14344088	24436869	2468123769	750.82	SPIKE_1_IN_S16_L003_R1_001.fastq.gz, SRR14344088, SRR14344088.lite	SRA

SRX10697946 SRP316737 OTHER SINGLE

GSM5268778: SPIKE rep2 input; Homo sapiens; OTHER

Sample: SRS8787359

BioProject: PRJNA725841

BioSample: SAMN18906467

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Homo sapiens

Sample attributes

source_name: BEAS-2B expressing SPIKE

antibody manufacturer: Sigma-Aldrich

antibody: 3XFLAG tag

adapter: InvRiL19

Original files (1)

BEAS-2B expressing SPIKE

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14344089	21744715	2196216215	675.08	SPIKE_2_iN_S17_L003_R1_001.fastq.gz, SRR14344089, SRR14344089.lite	SRA

SRX10697947 SRP316737 OTHER SINGLE

GSM5268779: ORF3a rep1 input; Homo sapiens; OTHER

Sample: SRS8787360

BioProject: PRJNA725841

BioSample: SAMN18906466

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Homo sapiens

Sample attributes

source_name: BEAS-2B expressing ORF3a

antibody manufacturer: IBA Lifesciences

antibody: 2xStrep tag

adapter: InvRiL19

Original files (1)

BEAS-2B expressing ORF3a

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14344090	14813327	1496146027	480.97	ORF3a-IN1_S82_L002_R1_001.fastq.gz, SRR14344090, SRR14344090.lite	SRA

SRX10697948 SRP316737 OTHER SINGLE

GSM5268780: ORF3a rep2 input; Homo sapiens; OTHER

Sample: SRS8787361

BioProject: PRJNA725841

BioSample: SAMN18906465

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Homo sapiens

Sample attributes

source_name: BEAS-2B expressing ORF3a

antibody manufacturer: IBA Lifesciences

antibody: 2xStrep tag

adapter: InvRiL19

Original files (1)

BEAS-2B expressing ORF3a

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14344091	16546795	1671226295	538.6	ORF3a-IN2_S81_L002_R1_001.fastq.gz, SRR14344091, SRR14344091.lite	SRA

SRX10697949 SRP316737 OTHER SINGLE

GSM5268781: ORF3b rep1 input; Homo sapiens; OTHER

Sample: SRS8787362

BioProject: PRJNA725841

BioSample: SAMN18906464

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Homo sapiens

Sample attributes

source_name: BEAS-2B expressing ORF3b

antibody manufacturer: Sigma-Aldrich

antibody: 3XFLAG tag

adapter: InvRiL19

Original files (1)

BEAS-2B expressing ORF3b

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14344092	41328441	4174172541	1292.53	orf3b-1-IN_S23_L004_R1_001.fastq.gz, SRR14344092, SRR14344092.lite	SRA

SRX10697950 SRP316737 OTHER SINGLE

GSM5268782: ORF3b rep2 input; Homo sapiens; OTHER

Sample: SRS8787363

BioProject: PRJNA725841

BioSample: SAMN18906463

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Homo sapiens

Sample attributes

source_name: BEAS-2B expressing ORF3b

antibody manufacturer: Sigma-Aldrich

antibody: 3XFLAG tag

adapter: InvRiL19

Original files (1)

BEAS-2B expressing ORF3b

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14344093	62759052	6338664252	1973.25	orf3b-2-IN_S22_L004_R1_001.fastq.gz, SRR14344093, SRR14344093.lite	SRA

SRX10697951 SRP316737 OTHER SINGLE

GSM5268783: E rep1 input; Homo sapiens; OTHER

Sample: SRS8787364

BioProject: PRJNA725841

BioSample: SAMN18906462

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Homo sapiens

Sample attributes

source_name: BEAS-2B expressing E

antibody manufacturer: IBA Lifesciences

antibody: 2xStrep tag

adapter: InvRiL19

Original files (1)

BEAS-2B expressing E

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14344094	15872118	1603083918	525.88	E-IN1_S86_L002_R1_001.fastq.gz, SRR14344094, SRR14344094.lite	SRA

SRX10697952 SRP316737 OTHER SINGLE

GSM5268784: E rep2 input; Homo sapiens; OTHER

Sample: SRS8787366

BioProject: PRJNA725841

BioSample: SAMN18906461

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Homo sapiens

Sample attributes

source_name: BEAS-2B expressing E

antibody manufacturer: IBA Lifesciences

antibody: 2xStrep tag

adapter: InvRiL19

Original files (1)

BEAS-2B expressing E

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14344095	23670314	2390701714	766.09	E-IN2_S87_L002_R1_001.fastq.gz, SRR14344095, SRR14344095.lite	SRA

SRX10697953 SRP316737 OTHER SINGLE

GSM5268785: M rep1 input; Homo sapiens; OTHER

Sample: SRS8787365

BioProject: PRJNA725841

BioSample: SAMN18906568

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Homo sapiens

Sample attributes

source_name: BEAS-2B expressing M

antibody manufacturer: IBA Lifesciences

antibody: 2xStrep tag

adapter: InvRiL19

Original files (1)

BEAS-2B expressing M

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14344096	16151783	1631330083	519.32	M-IN1_S53_L002_R1_001.fastq.gz, SRR14344096, SRR14344096.lite	SRA

SRX10697954 SRP316737 OTHER SINGLE

GSM5268786: M rep2 input; Homo sapiens; OTHER

Sample: SRS8787367

BioProject: PRJNA725841

BioSample: SAMN18906564

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Homo sapiens

Sample attributes

source_name: BEAS-2B expressing M

antibody manufacturer: IBA Lifesciences

antibody: 2xStrep tag

adapter: InvRiL19

Original files (1)

BEAS-2B expressing M

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14344097	16880215	1704901715	537.78	M-IN2_S54_L002_R1_001.fastq.gz, SRR14344097, SRR14344097.lite	SRA

SRX10697955 SRP316737 OTHER SINGLE

GSM5268787: ORF6 rep1 input; Homo sapiens; OTHER

Sample: SRS8787368

BioProject: PRJNA725841

BioSample: SAMN18906563

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Homo sapiens

Sample attributes

source_name: BEAS-2B expressing ORF6

antibody manufacturer: IBA Lifesciences

antibody: 2xStrep tag

adapter: InvRiL19

Original files (1)

BEAS-2B expressing ORF6

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14344098	15972430	1613215430	512.88	ORF6-IN1_S88_L002_R1_001.fastq.gz, SRR14344098, SRR14344098.lite	SRA

SRX10697956 SRP316737 OTHER SINGLE

GSM5268788: ORF6 rep2 input; Homo sapiens; OTHER

Sample: SRS8787369

BioProject: PRJNA725841

BioSample: SAMN18906562

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Homo sapiens

Sample attributes

source_name: BEAS-2B expressing ORF6

antibody manufacturer: IBA Lifesciences

antibody: 2xStrep tag

adapter: InvRiL19

Original files (1)

BEAS-2B expressing ORF6

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14344099	16103801	1626483901	522.22	ORF6-IN2_S89_L002_R1_001.fastq.gz, SRR14344099, SRR14344099.lite	SRA

SRX10697957 SRP316737 OTHER SINGLE

GSM5268789: ORF7a rep1 input; Homo sapiens; OTHER

Sample: SRS8787370

BioProject: PRJNA725841

BioSample: SAMN18906561

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Homo sapiens

Sample attributes

source_name: BEAS-2B expressing ORF7a

antibody manufacturer: IBA Lifesciences

antibody: 2xStrep tag

adapter: InvRiL19

Original files (1)

BEAS-2B expressing ORF7a

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14344100	62404371	6302841471	1958.61	ORF7a-IN1_S59_L002_R1_001.fastq.gz, SRR14344100, SRR14344100.lite	SRA

SRX10697958 SRP316737 OTHER SINGLE

GSM5268790: ORF7a rep2 input; Homo sapiens; OTHER

Sample: SRS8787371

BioProject: PRJNA725841

BioSample: SAMN18906567

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Homo sapiens

Sample attributes

source_name: BEAS-2B expressing ORF7a

antibody manufacturer: IBA Lifesciences

antibody: 2xStrep tag

adapter: InvRiL19

Original files (1)

BEAS-2B expressing ORF7a

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14344101	43685975	4412283475	1376.27	ORF7a-IN2_S60_L002_R1_001.fastq.gz, SRR14344101, SRR14344101.lite	SRA

SRX10697959 SRP316737 OTHER SINGLE

GSM5268791: ORF7b rep1 input; Homo sapiens; OTHER

Sample: SRS8787372

BioProject: PRJNA725841

BioSample: SAMN18906566

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Homo sapiens

Sample attributes

source_name: BEAS-2B expressing ORF7b

antibody manufacturer: Sigma-Aldrich

antibody: 3XFLAG tag

adapter: InvRiL19

Original files (1)

BEAS-2B expressing ORF7b

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14344102	59875303	6047405603	1872.11	orf7b-1-IN_S29_L004_R1_001.fastq.gz, SRR14344102, SRR14344102.lite	SRA

SRX10697960 SRP316737 OTHER SINGLE

GSM5268792: ORF7b rep2 input; Homo sapiens; OTHER

Sample: SRS8787373

BioProject: PRJNA725841

BioSample: SAMN18906565

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Homo sapiens

Sample attributes

source_name: BEAS-2B expressing ORF7b

antibody manufacturer: Sigma-Aldrich

antibody: 3XFLAG tag

adapter: InvRiL19

Original files (1)

BEAS-2B expressing ORF7b

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14344103	59089207	5968009907	1856.88	orf7b-2-IN_S21_L004_R1_001.fastq.gz, SRR14344103, SRR14344103.lite	SRA

SRX10697961 SRP316737 OTHER SINGLE

GSM5268793: ORF8 rep1 input; Homo sapiens; OTHER

Sample: SRS8787374

BioProject: PRJNA725841

BioSample: SAMN18906560

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Homo sapiens

Sample attributes

source_name: BEAS-2B expressing ORF8

antibody manufacturer: Sigma-Aldrich

antibody: 3XFLAG tag

adapter: InvRiL19

Original files (1)

BEAS-2B expressing ORF8

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14344104	43325654	4375891054	1360.59	orf8-1-IN_S47_L004_R1_001.fastq.gz, SRR14344104, SRR14344104.lite	SRA

SRX10697962 SRP316737 OTHER SINGLE

GSM5268794: ORF8 rep2 input; Homo sapiens; OTHER

Sample: SRS8787375

BioProject: PRJNA725841

BioSample: SAMN18906559

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Homo sapiens

Sample attributes

source_name: BEAS-2B expressing ORF8

antibody manufacturer: Sigma-Aldrich

antibody: 3XFLAG tag

adapter: InvRiL19

Original files (1)

BEAS-2B expressing ORF8

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14344105	41226437	4163870137	1329.84	orf8-2-IN_S37_L004_R1_001.fastq.gz, SRR14344105, SRR14344105.lite	SRA

SRX10697963 SRP316737 OTHER SINGLE

GSM5268795: N rep1 input; Homo sapiens; OTHER

Sample: SRS8787376

BioProject: PRJNA725841

BioSample: SAMN18906525

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Homo sapiens

Sample attributes

source_name: BEAS-2B expressing N

antibody manufacturer: IBA Lifesciences

antibody: 2xStrep tag

adapter: InvRiL19

Original files (1)

BEAS-2B expressing N

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14344106	12540988	1266639788	406.45	N-IN1_S74_L002_R1_001.fastq.gz, SRR14344106, SRR14344106.lite	SRA

SRX10697964 SRP316737 OTHER SINGLE

GSM5268796: N rep2 input; Homo sapiens; OTHER

Sample: SRS8787377

BioProject: PRJNA725841

BioSample: SAMN18906524

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Homo sapiens

Sample attributes

source_name: BEAS-2B expressing N

antibody manufacturer: IBA Lifesciences

antibody: 2xStrep tag

adapter: InvRiL19

Original files (1)

BEAS-2B expressing N

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14344107	17453260	1762779260	560.12	N-IN2_S76_L002_R1_001.fastq.gz, SRR14344107, SRR14344107.lite	SRA

SRX10697965 SRP316737 OTHER SINGLE

GSM5268797: ORF9b rep1 input; Homo sapiens; OTHER

Sample: SRS8787378

BioProject: PRJNA725841

BioSample: SAMN18906523

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Homo sapiens

Sample attributes

source_name: BEAS-2B expressing ORF9b

antibody manufacturer: Sigma-Aldrich

antibody: 3XFLAG tag

adapter: InvRiL19

Original files (1)

BEAS-2B expressing ORF9b

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14344108	40958735	4136832235	1278.57	orf9b-1-IN_S30_L004_R1_001.fastq.gz, SRR14344108, SRR14344108.lite	SRA

SRX10697966 SRP316737 OTHER SINGLE

GSM5268798: ORF9b rep2 input; Homo sapiens; OTHER

Sample: SRS8787379

BioProject: PRJNA725841

BioSample: SAMN18906522

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Homo sapiens

Sample attributes

source_name: BEAS-2B expressing ORF9b

antibody manufacturer: Sigma-Aldrich

antibody: 3XFLAG tag

adapter: InvRiL19

Original files (1)

BEAS-2B expressing ORF9b

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14344109	48478888	4896367688	1525.26	orf9b-2-IN_S32_L004_R1_001.fastq.gz, SRR14344109, SRR14344109.lite	SRA

SRX10697967 SRP316737 OTHER SINGLE

GSM5268799: ORF9c rep1 input; Homo sapiens; OTHER

Sample: SRS8787380

BioProject: PRJNA725841

BioSample: SAMN18906521

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Homo sapiens

Sample attributes

source_name: BEAS-2B expressing ORF9c

antibody manufacturer: Sigma-Aldrich

antibody: 3XFLAG tag

adapter: InvRiL19

Original files (1)

BEAS-2B expressing ORF9c

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14344110	79934093	8073343393	2490.43	orf9c-1-IN_S27_L004_R1_001.fastq.gz, SRR14344110, SRR14344110.lite	SRA

SRX10697968 SRP316737 OTHER SINGLE

GSM5268800: ORF9c rep2 input; Homo sapiens; OTHER

Sample: SRS8787381

BioProject: PRJNA725841

BioSample: SAMN18906520

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Homo sapiens

Sample attributes

source_name: BEAS-2B expressing ORF9c

antibody manufacturer: Sigma-Aldrich

antibody: 3XFLAG tag

adapter: InvRiL19

Original files (1)

BEAS-2B expressing ORF9c

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14344111	55070760	5562146760	1729.86	orf9c-2-IN_S35_L004_R1_001.fastq.gz, SRR14344111, SRR14344111.lite	SRA

SRX10697969 SRP316737 OTHER SINGLE

GSM5268801: ORF10 rep1 input; Homo sapiens; OTHER

Sample: SRS8787382

BioProject: PRJNA725841

BioSample: SAMN18906519

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Homo sapiens

Sample attributes

source_name: BEAS-2B expressing ORF10

antibody manufacturer: Sigma-Aldrich

antibody: 3XFLAG tag

adapter: InvRiL19

Original files (1)

BEAS-2B expressing ORF10

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14344112	21479987	2169478687	661.69	ORF10_1_IN_S14_L003_R1_001.fastq.gz, SRR14344112, SRR14344112.lite	SRA

SRX10697970 SRP316737 OTHER SINGLE

GSM5268802: ORF10 rep2 input; Homo sapiens; OTHER

Sample: SRS8787383

BioProject: PRJNA725841

BioSample: SAMN18906518

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Homo sapiens

Sample attributes

source_name: BEAS-2B expressing ORF10

antibody manufacturer: Sigma-Aldrich

antibody: 3XFLAG tag

adapter: InvRiL19

Original files (1)

BEAS-2B expressing ORF10

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14344113	23517620	2375279620	738.67	ORF10_2_iN_S7_L003_R1_001.fastq.gz, SRR14344113, SRR14344113.lite	SRA

SRX10697971 SRP316737 OTHER SINGLE

GSM5268803: WT_Strep_HMW rep1 input; Homo sapiens; OTHER

Sample: SRS8787384

BioProject: PRJNA725841

BioSample: SAMN18906517

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Homo sapiens

Sample attributes

source_name: BEAS-2B

antibody manufacturer: IBA Lifesciences

antibody: 2xStrep tag

adapter: InvRiL19

Original files (1)

BEAS-2B

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14344114	17864164	1804280564	580.9	WT-high-IN1_S92_L002_R1_001.fastq.gz, SRR14344114, SRR14344114.lite	SRA

SRX10697972 SRP316737 OTHER SINGLE

GSM5268804: WT_Strep_HMW rep2 input; Homo sapiens; OTHER

Sample: SRS8787385

BioProject: PRJNA725841

BioSample: SAMN18906516

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Homo sapiens

Sample attributes

source_name: BEAS-2B

antibody manufacturer: IBA Lifesciences

antibody: 2xStrep tag

adapter: InvRiL19

Original files (1)

BEAS-2B

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14344115	15064506	1521515106	494.08	WT-high-IN2_S93_L002_R1_001.fastq.gz, SRR14344115, SRR14344115.lite	SRA

SRX10697973 SRP316737 OTHER SINGLE

GSM5268805: WT_Strep_LMW rep1 input; Homo sapiens; OTHER

Sample: SRS8787386

BioProject: PRJNA725841

BioSample: SAMN18906515

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Homo sapiens

Sample attributes

source_name: BEAS-2B

antibody manufacturer: IBA Lifesciences

antibody: 2xStrep tag

adapter: InvRiL19

Original files (1)

BEAS-2B

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14344116	14037357	1417773057	459.58	WT-low-IN1_S90_L002_R1_001.fastq.gz, SRR14344116, SRR14344116.lite	SRA

SRX10697974 SRP316737 OTHER SINGLE

GSM5268806: WT_Strep_LMW rep2 input; Homo sapiens; OTHER

Sample: SRS8787387

BioProject: PRJNA725841

BioSample: SAMN18906514

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Homo sapiens

Sample attributes

source_name: BEAS-2B

antibody manufacturer: IBA Lifesciences

antibody: 2xStrep tag

adapter: InvRiL19

Original files (1)

BEAS-2B

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14344117	17639601	1781599701	569.83	WT-low-IN2_S91_L002_R1_001.fastq.gz, SRR14344117, SRR14344117.lite	SRA

SRX10697975 SRP316737 OTHER SINGLE

GSM5268807: WT_FLAG_HMW rep1 input; Homo sapiens; OTHER

Sample: SRS8787388

BioProject: PRJNA725841

BioSample: SAMN18906513

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Homo sapiens

Sample attributes

source_name: BEAS-2B

antibody manufacturer: Sigma-Aldrich

antibody: 3XFLAG tag

adapter: InvRiL19

Original files (1)

BEAS-2B

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14344118	20531103	2073641403	631.27	WTH_1_IN_S13_L003_R1_001.fastq.gz, SRR14344118, SRR14344118.lite	SRA

SRX10697976 SRP316737 OTHER SINGLE

GSM5268808: WT_FLAG_HMW rep2 input; Homo sapiens; OTHER

Sample: SRS8787389

BioProject: PRJNA725841

BioSample: SAMN18906512

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Homo sapiens

Sample attributes

source_name: BEAS-2B

antibody manufacturer: Sigma-Aldrich

antibody: 3XFLAG tag

adapter: InvRiL19

Original files (1)

BEAS-2B

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14344119	24912585	2516171085	765.85	WTH_2_iN_S12_L003_R1_001.fastq.gz, SRR14344119, SRR14344119.lite	SRA

SRX10697977 SRP316737 OTHER SINGLE

GSM5268809: WT_FLAG_LMW rep1 input; Homo sapiens; OTHER

Sample: SRS8787390

BioProject: PRJNA725841

BioSample: SAMN18906511

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Homo sapiens

Sample attributes

source_name: BEAS-2B

antibody manufacturer: Sigma-Aldrich

antibody: 3XFLAG tag

adapter: InvRiL19

Original files (1)

BEAS-2B

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14344120	19780986	1997879586	610.65	WTL_1_IN_S10_L003_R1_001.fastq.gz, SRR14344120, SRR14344120.lite	SRA

SRX10697978 SRP316737 OTHER SINGLE

GSM5268810: WT_FLAG_LMW rep2 input; Homo sapiens; OTHER

Sample: SRS8787391

BioProject: PRJNA725841

BioSample: SAMN18906510

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Homo sapiens

Sample attributes

source_name: BEAS-2B

antibody manufacturer: Sigma-Aldrich

antibody: 3XFLAG tag

adapter: InvRiL19

Original files (1)

BEAS-2B

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14344121	17954792	1813433992	558.49	WTL_2_iN_S20_L003_R1_001.fastq.gz, SRR14344121, SRR14344121.lite	SRA

SRX10697979 SRP316737 OTHER SINGLE

GSM5268811: Vero_N rep1 input; Chlorocebus sabaeus; OTHER

Sample: SRS8787392

BioProject: PRJNA725841

BioSample: SAMN18906509

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Chlorocebus sabaeus

Sample attributes

source_name: Vero E6 cells infected with SARS-CoV-2

antibody manufacturer: Sino Biological

antibody: None

adapter: InvRiL19

Original files (1)

Vero E6 cells infected with SARS-CoV-2

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14344122	51281677	5179449377	1898.92	Vero_N-1-IN_S13_L001_R1_001.fastq.gz, SRR14344122, SRR14344122.lite	SRA

SRX10697980 SRP316737 OTHER SINGLE

GSM5268812: Vero_N rep2 input; Chlorocebus sabaeus; OTHER

Sample: SRS8787394

BioProject: PRJNA725841

BioSample: SAMN18906508

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Chlorocebus sabaeus

Sample attributes

source_name: Vero E6 cells infected with SARS-CoV-2

antibody manufacturer: Sino Biological

antibody: None

adapter: InvRiL19

Original files (1)

Vero E6 cells infected with SARS-CoV-2

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14344123	39806642	4020470842	1462.03	Vero_N-2-IN_S14_L001_R1_001.fastq.gz, SRR14344123, SRR14344123.lite	SRA

SRX10697981 SRP316737 OTHER SINGLE

GSM5268813: Vero_NSP8 rep1 input; Chlorocebus sabaeus; OTHER

Sample: SRS8787393

BioProject: PRJNA725841

BioSample: SAMN18906451

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Chlorocebus sabaeus

Sample attributes

source_name: Vero E6 cells infected with SARS-CoV-2

antibody manufacturer: GeneTex

antibody: None

adapter: InvRiL19

Original files (1)

Vero E6 cells infected with SARS-CoV-2

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14344124	55714003	5627114303	2039.81	Vero_NSP8-1-IN_S9_L001_R1_001.fastq.gz, SRR14344124, SRR14344124.lite	SRA

SRX10697982 SRP316737 OTHER SINGLE

GSM5268814: Vero_NSP8 rep2 input; Chlorocebus sabaeus; OTHER

Sample: SRS8787395

BioProject: PRJNA725841

BioSample: SAMN18906493

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Chlorocebus sabaeus

Sample attributes

source_name: Vero E6 cells infected with SARS-CoV-2

antibody manufacturer: GeneTex

antibody: None

adapter: InvRiL19

Original files (1)

Vero E6 cells infected with SARS-CoV-2

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14344125	56794275	5736221775	2051.91	Vero_NSP8-2-IN_S10_L001_R1_001.fastq.gz, SRR14344125, SRR14344125.lite	SRA

SRX10697983 SRP316737 OTHER SINGLE

GSM5268815: Vero_NSP12 rep1 input; Chlorocebus sabaeus; OTHER

Sample: SRS8787396

BioProject: PRJNA725841

BioSample: SAMN18906492

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Chlorocebus sabaeus

Sample attributes

source_name: Vero E6 cells infected with SARS-CoV-2

antibody manufacturer: GeneTex

antibody: None

adapter: InvRiL19

Original files (1)

Vero E6 cells infected with SARS-CoV-2

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14344126	65201374	6585338774	2376.28	Vero_NSP12-1-IN_S11_L001_R1_001.fastq.gz, SRR14344126, SRR14344126.li…	SRA

SRX10697984 SRP316737 OTHER SINGLE

GSM5268816: Vero_NSP12 rep2 input; Chlorocebus sabaeus; OTHER

Sample: SRS8787397

BioProject: PRJNA725841

BioSample: SAMN18906491

Platform: ILLUMINA

Instrument: Illumina HiSeq 2000

Organism: Chlorocebus sabaeus

Sample attributes

source_name: Vero E6 cells infected with SARS-CoV-2

antibody manufacturer: GeneTex

antibody: None

adapter: InvRiL19

Original files (1)

Vero E6 cells infected with SARS-CoV-2

Runs (1)

Run	Spots	Bases	Size (MB)	Files	Link
SRR14344127	74683446	7543028046	2746.92	Vero_NSP12-2-IN_S12_L001_R1_001.fastq.gz, SRR14344127, SRR14344127.li…	SRA

Linked Publications (2)

Discovery and functional interrogation of SARS-CoV-2 protein-RNA interactions.

Research square · 2022

Discovery and functional interrogation of SARS-CoV-2 protein-RNA interactions.

bioRxiv : the preprint server for biology · 2022

Data Files (152)

Accession	File Name	Stored Type	Size	Download
—	E-IN1_S86_L002_R1_001.fastq.gz	OTHER	525.9 MB	link
—	E-IN2_S87_L002_R1_001.fastq.gz	OTHER	766.1 MB	link
—	E-IP1_S65_L002_R1_001.fastq.gz	OTHER	2.1 GB	link
—	E-IP2_S66_L002_R1_001.fastq.gz	OTHER	1.1 GB	link
—	M-IN1_S53_L002_R1_001.fastq.gz	OTHER	519.3 MB	link
—	M-IN2_S54_L002_R1_001.fastq.gz	OTHER	537.8 MB	link
—	M-IP1_S97_L002_R1_001.fastq.gz	OTHER	661.8 MB	link
—	M-IP2_S98_L002_R1_001.fastq.gz	OTHER	605.7 MB	link
—	N-IN1_S74_L002_R1_001.fastq.gz	OTHER	406.4 MB	link
—	N-IN2_S76_L002_R1_001.fastq.gz	OTHER	560.1 MB	link
—	N-IP1_S75_L002_R1_001.fastq.gz	OTHER	474.7 MB	link
—	N-IP2_S77_L002_R1_001.fastq.gz	OTHER	798.6 MB	link
—	nsp10-IN1__S63_L002_R1_001.fastq.gz	OTHER	743.9 MB	link
—	nsp10-IN1_S64_L002_R1_001.fastq.gz	OTHER	1.1 GB	link
—	nsp10-IP1_S103_L002_R1_001.fastq.gz	OTHER	813.4 MB	link
—	nsp10-IP2_S104_L002_R1_001.fastq.gz	OTHER	721.5 MB	link
—	Nsp11-1-IN_S28_L007_R1_001.fastq.gz	OTHER	407.0 MB	link
—	NSP11_1_IP_S47_L003_R1_001.fastq.gz	OTHER	734.6 MB	link
—	NSP11_2_iN_S18_L003_R1_001.fastq.gz	OTHER	847.0 MB	link
—	NSP11_2_IP_S44_L003_R1_001.fastq.gz	OTHER	727.6 MB	link
—	NSP1-1-IN_S1_L002_R1_001.fastq.gz	OTHER	343.2 MB	link
—	NSP1-1-IP_S2_L002_R1_001.fastq.gz	OTHER	1.4 GB	link
—	nsp12-1-IN_S24_L004_R1_001.fastq.gz	OTHER	1.9 GB	link
—	nsp12-1-IP_S42_L004_R1_001.fastq.gz	OTHER	1.4 GB	link
—	nsp12-2-IN_S26_L004_R1_001.fastq.gz	OTHER	2.6 GB	link
—	nsp12-2-IP_S43_L004_R1_001.fastq.gz	OTHER	1.4 GB	link
—	NSP1-2-IP_S4_L002_R1_001.fastq.gz	OTHER	533.0 MB	link
—	NSP13_1_IN_S36_L003_R1_001.fastq.gz	OTHER	811.0 MB	link
—	NSP13_1_IP_S45_L003_R1_001.fastq.gz	OTHER	771.9 MB	link
—	Nsp13-2-IN_S29_L007_R1_001.fastq.gz	OTHER	388.5 MB	link
—	NSP13_2_IP_S38_L003_R1_001.fastq.gz	OTHER	804.8 MB	link
—	NSP14_1_IN_S2_L003_R1_001.fastq.gz	OTHER	717.5 MB	link
—	NSP14_1_IP_S31_L003_R1_001.fastq.gz	OTHER	641.1 MB	link
—	NSP14_2_iN_S3_L003_R1_001.fastq.gz	OTHER	810.5 MB	link
—	NSP14_2_IP_S22_L003_R1_001.fastq.gz	OTHER	719.3 MB	link
—	nsp15-IN1_S78_L002_R1_001.fastq.gz	OTHER	307.1 MB	link
—	nsp15-IN2_S79_L002_R1_001.fastq.gz	OTHER	673.1 MB	link
—	nsp15-IP1_S45_L002_R1_001.fastq.gz	OTHER	613.1 MB	link
—	nsp15-IP2_S46_L002_R1_001.fastq.gz	OTHER	470.8 MB	link
—	NSP16-1-IN_S9_L002_R1_001.fastq.gz	OTHER	442.0 MB	link
—	NSP16-1-IP_S10_L002_R1_001.fastq.gz	OTHER	465.3 MB	link
—	NSP16-2-IN_S11_L002_R1_001.fastq.gz	OTHER	389.8 MB	link
—	NSP16-2-IP_S12_L002_R1_001.fastq.gz	OTHER	436.8 MB	link
—	nsp2-1-IN_S3_L004_R1_001.fastq.gz	OTHER	1.8 GB	link
—	nsp2-1-IP_S8_L004_R1_001.fastq.gz	OTHER	1.6 GB	link
—	nsp2-2-IN_S4_L004_R1_001.fastq.gz	OTHER	1.7 GB	link
—	nsp2-2-IP_S11_L004_R1_001.fastq.gz	OTHER	1.6 GB	link
—	nsp3-1-IN_S5_L004_R1_001.fastq.gz	OTHER	1.8 GB	link
—	nsp3-1-IP_S9_L004_R1_001.fastq.gz	OTHER	1.9 GB	link
—	nsp3-2-IN_S6_L004_R1_001.fastq.gz	OTHER	1.8 GB	link
—	nsp3-2-IP_S12_L004_R1_001.fastq.gz	OTHER	1.6 GB	link
—	NSP4_1_IN_S5_L003_R1_001.fastq.gz	OTHER	743.2 MB	link
—	Nsp4-1-IP_S27_L007_R1_001.fastq.gz	OTHER	396.0 MB	link
—	NSP4_2_iN_S4_L003_R1_001.fastq.gz	OTHER	731.3 MB	link
—	NSP4_2_IP_S28_L003_R1_001.fastq.gz	OTHER	737.6 MB	link
—	nsp5-1-IN_S20_L004_R1_001.fastq.gz	OTHER	1.1 GB	link
—	nsp5-1-IP_S44_L004_R1_001.fastq.gz	OTHER	1.7 GB	link
—	nsp5-2-IN_S17_L004_R1_001.fastq.gz	OTHER	1.9 GB	link
—	nsp5-2-IP_S39_L004_R1_001.fastq.gz	OTHER	2.7 GB	link
—	nsp5_C145A-IN1_S47_L002_R1_001.fastq.gz	OTHER	557.6 MB	link
—	nsp5_C145A-IN2_S49_L002_R1_001.fastq.gz	OTHER	628.0 MB	link
—	nsp5_C145A-IP1_S48_L002_R1_001.fastq.gz	OTHER	522.0 MB	link
—	nsp5_C145A-IP2_S50_L002_R1_001.fastq.gz	OTHER	528.5 MB	link
—	nsp6-1-IN_S2_L004_R1_001.fastq.gz	OTHER	1.6 GB	link
—	nsp6-1-IP_S10_L004_R1_001.fastq.gz	OTHER	1.6 GB	link
—	nsp6-2-IN_S1_L004_R1_001.fastq.gz	OTHER	1.7 GB	link
—	nsp6-2-IP_S7_L004_R1_001.fastq.gz	OTHER	1.9 GB	link
—	nsp7-1-IN_S13_L004_R1_001.fastq.gz	OTHER	968.5 MB	link
—	nsp7-1-IP_S16_L004_R1_001.fastq.gz	OTHER	829.7 MB	link
—	nsp7-2-IN_S14_L004_R1_001.fastq.gz	OTHER	1.8 GB	link
—	nsp7-2-IP_S15_L004_R1_001.fastq.gz	OTHER	1.2 GB	link
—	NSP8_1_IN_S35_L003_R1_001.fastq.gz	OTHER	649.7 MB	link
—	NSP8_1_IP_S39_L003_R1_001.fastq.gz	OTHER	1.0 GB	link
—	NSP8_2_iN_S33_L003_R1_001.fastq.gz	OTHER	757.6 MB	link
—	NSP8_2_IP_S43_L003_R1_001.fastq.gz	OTHER	942.8 MB	link
—	nsp8-IP2_S57_L002_R1_001.fastq.InvRNA2.fq.gz	OTHER	407.6 MB	link
—	nsp9-1-IN_S5_L001_R1_001.fastq.gz	OTHER	958.0 MB	link
—	nsp9-1-IP_S36_L001_R1_001.fastq.gz	OTHER	775.2 MB	link
—	nsp9-2-IN_S4_L001_R1_001.fastq.gz	OTHER	872.3 MB	link
—	nsp9-2-IP_S31_L001_R1_001.fastq.gz	OTHER	1.1 GB	link
—	ORF10_1_IN_S14_L003_R1_001.fastq.gz	OTHER	661.7 MB	link
—	ORF10_1_IP_S48_L003_R1_001.fastq.gz	OTHER	673.3 MB	link
—	ORF10_2_iN_S7_L003_R1_001.fastq.gz	OTHER	738.7 MB	link
—	ORF10_2_IP_S41_L003_R1_001.fastq.gz	OTHER	762.8 MB	link
—	ORF3a-IN1_S82_L002_R1_001.fastq.gz	OTHER	481.0 MB	link
—	ORF3a-IN2_S81_L002_R1_001.fastq.gz	OTHER	538.6 MB	link
—	ORF3a-IP1_S51_L002_R1_001.fastq.gz	OTHER	601.0 MB	link
—	ORF3a-IP2_S52_L002_R1_001.fastq.gz	OTHER	632.0 MB	link
—	orf3b-1-IN_S23_L004_R1_001.fastq.gz	OTHER	1.3 GB	link
—	orf3b-1-IP_S46_L004_R1_001.fastq.gz	OTHER	1.2 GB	link
—	orf3b-2-IN_S22_L004_R1_001.fastq.gz	OTHER	1.9 GB	link
—	orf3b-2-IP_S40_L004_R1_001.fastq.gz	OTHER	1.5 GB	link
—	ORF6-IN1_S88_L002_R1_001.fastq.gz	OTHER	512.9 MB	link
—	ORF6-IN2_S89_L002_R1_001.fastq.gz	OTHER	522.2 MB	link
—	ORF6-IP1_S67_L002_R1_001.fastq.gz	OTHER	874.8 MB	link
—	ORF6-IP2_S68_L002_R1_001.fastq.gz	OTHER	956.5 MB	link
—	ORF7a-IN1_S59_L002_R1_001.fastq.gz	OTHER	1.9 GB	link
—	ORF7a-IN2_S60_L002_R1_001.fastq.gz	OTHER	1.3 GB	link
—	ORF7a-IP1_S101_L002_R1_001.fastq.gz	OTHER	590.3 MB	link
—	ORF7a-IP2_S102_L002_R1_001.fastq.gz	OTHER	774.5 MB	link
—	orf7b-1-IN_S29_L004_R1_001.fastq.gz	OTHER	1.8 GB	link
—	orf7b-1-IP_S52_L004_R1_001.fastq.gz	OTHER	1.5 GB	link
—	orf7b-2-IN_S21_L004_R1_001.fastq.gz	OTHER	1.8 GB	link
—	orf7b-2-IP_S38_L004_R1_001.fastq.gz	OTHER	1.6 GB	link
—	orf8-1-IN_S47_L004_R1_001.fastq.gz	OTHER	1.3 GB	link
—	orf8-1-IP_S57_L004_R1_001.fastq.gz	OTHER	1.6 GB	link
—	orf8-2-IN_S37_L004_R1_001.fastq.gz	OTHER	1.3 GB	link
—	orf8-2-IP_S55_L004_R1_001.fastq.gz	OTHER	1.5 GB	link
—	orf9b-1-IN_S30_L004_R1_001.fastq.gz	OTHER	1.2 GB	link
—	orf9b-1-IP_S54_L004_R1_001.fastq.gz	OTHER	1.2 GB	link
—	orf9b-2-IN_S32_L004_R1_001.fastq.gz	OTHER	1.5 GB	link
—	orf9b-2-IP_S41_L004_R1_001.fastq.gz	OTHER	3.2 GB	link
—	orf9c-1-IN_S27_L004_R1_001.fastq.gz	OTHER	2.4 GB	link
—	orf9c-1-IP_S34_L004_R1_001.fastq.gz	OTHER	1.6 GB	link
—	orf9c-2-IN_S35_L004_R1_001.fastq.gz	OTHER	1.7 GB	link
—	orf9c-2-IP_S53_L004_R1_001.fastq.gz	OTHER	1.8 GB	link
—	SPIKE_1_IN_S16_L003_R1_001.fastq.gz	OTHER	750.8 MB	link
—	SPIKE_1_IP_S42_L003_R1_001.fastq.gz	OTHER	1002.8 MB	link
—	SPIKE_2_iN_S17_L003_R1_001.fastq.gz	OTHER	675.1 MB	link
—	SPIKE_2_IP_S34_L003_R1_001.fastq.gz	OTHER	668.7 MB	link
—	SRR14344084.lite	OTHER	307.1 MB	link
—	SRR14344093.lite	OTHER	1.9 GB	link
—	SRR14344098.lite	OTHER	512.9 MB	link
—	SRR14344110.lite	OTHER	2.4 GB	link
—	SRR14344127	OTHER	2.7 GB	link
—	Vero_N-1-IN_S13_L001_R1_001.fastq.gz	OTHER	1.9 GB	link
—	Vero_N-1-IP_S5_L001_R1_001.fastq.gz	OTHER	1.6 GB	link
—	Vero_N-2-IN_S14_L001_R1_001.fastq.gz	OTHER	1.4 GB	link
—	Vero_N-2-IP_S6_L001_R1_001.fastq.gz	OTHER	1.8 GB	link
—	Vero_NSP12-1-IN_S11_L001_R1_001.fastq.gz	OTHER	2.3 GB	link
—	Vero_NSP12-1-IP_S3_L001_R1_001.fastq.gz	OTHER	2.2 GB	link
—	Vero_NSP12-2-IN_S12_L001_R1_001.fastq.gz	OTHER	2.7 GB	link
—	Vero_NSP12-2-IP_S4_L001_R1_001.fastq.gz	OTHER	1.9 GB	link
—	Vero_NSP8-1-IN_S9_L001_R1_001.fastq.gz	OTHER	2.0 GB	link
—	Vero_NSP8-1-IP_S1_L001_R1_001.fastq.gz	OTHER	2.2 GB	link
—	Vero_NSP8-2-IN_S10_L001_R1_001.fastq.gz	OTHER	2.0 GB	link
—	Vero_NSP8-2-IP_S2_L001_R1_001.fastq.gz	OTHER	3.2 GB	link
—	WTH_1_IN_S13_L003_R1_001.fastq.gz	OTHER	631.3 MB	link
—	WTH_1_IP_S30_L003_R1_001.fastq.gz	OTHER	689.2 MB	link
—	WTH_2_iN_S12_L003_R1_001.fastq.gz	OTHER	765.8 MB	link
—	WTH_2_IP_S24_L003_R1_001.fastq.gz	OTHER	447.4 MB	link
—	WT-high-IN1_S92_L002_R1_001.fastq.gz	OTHER	580.9 MB	link
—	WT-high-IN2_S93_L002_R1_001.fastq.gz	OTHER	494.1 MB	link
—	WT-high-IP1_S71_L002_R1_001.fastq.gz	OTHER	884.3 MB	link
—	WTL_1_IN_S10_L003_R1_001.fastq.gz	OTHER	610.6 MB	link
—	WTL_1_IP_S11_L003_R1_001.fastq.gz	OTHER	393.3 MB	link
—	WTL_2_iN_S20_L003_R1_001.fastq.gz	OTHER	558.5 MB	link
—	WTL_2_IP_S21_L003_R1_001.fastq.gz	OTHER	686.8 MB	link
—	WT-low-IN1_S90_L002_R1_001.fastq.gz	OTHER	459.6 MB	link
—	WT-low-IN2_S91_L002_R1_001.fastq.gz	OTHER	569.8 MB	link
—	WT-low-IP1_S69_L002_R1_001.fastq.gz	OTHER	1.0 GB	link
—	WT-low-IP2_S70_L002_R1_001.fastq.gz	OTHER	1.1 GB	link