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GSE95237

GSE GEO
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Genome-wide maps of chromatin state and chromatin accessibility in CD8 T cell subsets

Organism: Mus musculus
Platform: GPL17021
Samples: 40
Experiment Types:
Genome binding/occupancy profiling by high throughput sequencing
Submitted: Feb 22 2017
Last Updated: May 15 2019
Status: Public on Mar 13 2017
Contact: Howard,Y,Chang (Stanford University)

Relations

SubSeries of: GSE95238 BioProject: https://www.ncbi.nlm.nih.gov/bioproject/PRJNA376705 SRA: https://www.ncbi.nlm.nih.gov/sra?term=SRP100941

Summary

To understand epigenetic mechanisms underlying CD8 T cell differentiation, we performed ChIP-seq of 4 histone modifications (H3K4me1, H3K4me3, H3K27ac, H3K27me3) and ATAC-seq to probe chromatin states and accessibility. We identified subset-specific regulatory elements (enhancers and promoters) from chromatin states and predicted key transcription factors from accessible regulatory regions using ATAC-seq.

Overall Design

Examination of 4 different histone modifications and open chromatin in 4 cell types.

Analysis (3 steps)

View Data Processing
Processing steps for GSE95237
  1. Reads were aligned to mm10 by BWA
  2. Reads with low quality (MAPQ < 30) were filtered out.
  3. If multiple reads were mapped to the exact same location, only one read was kept.

Supplementary Files (20)

GSE95237_MMemory_H3K4me3.bw Download
GSE95237_MP_ATAC-seq.bw Download
GSE95237_MP_H3K27ac.bw Download
GSE95237_MP_H3K4me1.bw Download
GSE95237_MP_H3K4me3.bw Download
GSE95237_MP_Input.bw Download
GSE95237_Memory_ATAC-seq.bw Download
GSE95237_Memory_H3K27ac.bw Download
GSE95237_Memory_H3K4me1.bw Download
GSE95237_Memory_Input.bw Download
GSE95237_TE_ATAC-seq.bw Download
GSE95237_TE_H3K27ac.bw Download
GSE95237_TE_H3K4me1.bw Download
GSE95237_TE_H3K4me3.bw Download
GSE95237_TE_Input.bw Download
GSE95237_TN_ATAC-seq.bw Download
GSE95237_TN_H3K27ac.bw Download
GSE95237_TN_H3K4me1.bw Download
GSE95237_TN_H3K4me3.bw Download
GSE95237_TN_Input.bw Download
GEO Samples (40)
GSM2357713 GSM2357714 GSM2357715 GSM2357716 GSM2357717 GSM2357718 GSM2357719 GSM2357720 GSM2357721 GSM2357722 GSM2357723 GSM2357724 GSM2357725 GSM2357726 GSM2357727 GSM2357728 GSM2357729 GSM2357730 GSM2357731 GSM2357732 GSM2357733 GSM2357734 GSM2357735 GSM2357736 GSM2357745 GSM2357746 GSM2357747 GSM2357748 GSM2357749 GSM2357750 GSM2357751 GSM2357752 GSM2357753 GSM2357754 GSM2357755 GSM2357756 GSM2357757 GSM2357758 GSM2357759 GSM2357760

Dataset Citations (1)

PubMed citation (PMID 28288100)

SRA Experiments (40) and Runs (40)

Total: 26455 MB
SRX2606512 SRP100941 OTHER SINGLE
GSM2357713: TN_ATAC-seq_rep1; Mus musculus; OTHER
Sample: SRS1755799
BioProject: PRJNA376705
BioSample: SAMN05933608
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: naive CD8 T cells
strain: C57BL/6
age: six to seven weeks
tissue: Spleen
Original files (1)
naive CD8 T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR5305074 26741423 1337071150 882.3 SRR5305074, SRR5305074.sralite SRA
SRX2606513 SRP100941 OTHER SINGLE
GSM2357714: TN_ATAC-seq_rep2; Mus musculus; OTHER
Sample: SRS1755800
BioProject: PRJNA376705
BioSample: SAMN05933607
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: naive CD8 T cells
strain: C57BL/6
age: six to seven weeks
tissue: Spleen
Original files (1)
naive CD8 T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR5305075 20542729 1027136450 678.08 SRR5305075, SRR5305075.sralite SRA
SRX2606514 SRP100941 OTHER SINGLE
GSM2357715: TE_ATAC-seq_rep1; Mus musculus; OTHER
Sample: SRS1755802
BioProject: PRJNA376705
BioSample: SAMN05933606
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: KLRG1hiIL7Rlo terminal effector CD8 T cells
strain: C57BL/6
age: six to seven weeks
tissue: Spleen
Original files (1)
KLRG1hiIL7Rlo terminal effector CD8 T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR5305076 22183765 1109188250 733.27 SRR5305076, SRR5305076.sralite SRA
SRX2606515 SRP100941 OTHER SINGLE
GSM2357716: TE_ATAC-seq_rep2; Mus musculus; OTHER
Sample: SRS1755801
BioProject: PRJNA376705
BioSample: SAMN05933605
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: KLRG1hiIL7Rlo terminal effector CD8 T cells
strain: C57BL/6
age: six to seven weeks
tissue: Spleen
Original files (1)
KLRG1hiIL7Rlo terminal effector CD8 T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR5305077 19650404 982520200 649.2 SRR5305077, SRR5305077.sralite SRA
SRX2606516 SRP100941 OTHER SINGLE
GSM2357717: MP_ATAC-seq_rep1; Mus musculus; OTHER
Sample: SRS1755804
BioProject: PRJNA376705
BioSample: SAMN05933604
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: KLRG1loIL7Rhi memory precursor CD8 T cells
strain: C57BL/6
age: six to seven weeks
tissue: Spleen
Original files (1)
KLRG1loIL7Rhi memory precursor CD8 T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR5305078 20803622 1040181100 684.09 SRR5305078, SRR5305078.sralite SRA
SRX2606517 SRP100941 OTHER SINGLE
GSM2357718: MP_ATAC-seq_rep2; Mus musculus; OTHER
Sample: SRS1755803
BioProject: PRJNA376705
BioSample: SAMN05933603
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: KLRG1loIL7Rhi memory precursor CD8 T cells
strain: C57BL/6
age: six to seven weeks
tissue: Spleen
Original files (1)
KLRG1loIL7Rhi memory precursor CD8 T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR5305079 18856727 942836350 622.28 SRR5305079.sralite, SRR5305079 SRA
SRX2606518 SRP100941 OTHER SINGLE
GSM2357719: Memory_ATAC-seq_rep1; Mus musculus; OTHER
Sample: SRS1755805
BioProject: PRJNA376705
BioSample: SAMN05933602
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: KLRG1loIL7Rhi memory CD8 T cells
strain: C57BL/6
age: six to seven weeks
tissue: Spleen
Original files (1)
KLRG1loIL7Rhi memory CD8 T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR5305080 11537763 576888150 381.38 SRR5305080, SRR5305080.sralite SRA
SRX2606519 SRP100941 OTHER SINGLE
GSM2357720: Memory_ATAC-seq_rep2; Mus musculus; OTHER
Sample: SRS1755806
BioProject: PRJNA376705
BioSample: SAMN05933601
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: KLRG1loIL7Rhi memory CD8 T cells
strain: C57BL/6
age: six to seven weeks
tissue: Spleen
Original files (1)
KLRG1loIL7Rhi memory CD8 T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR5305081 32417837 1620891850 1073.05 SRR5305081, SRR5305081.sralite SRA
SRX2606520 SRP100941 ChIP-Seq SINGLE
GSM2357721: TN_H3K4me3_rep1; Mus musculus; ChIP-Seq
Sample: SRS1755807
BioProject: PRJNA376705
BioSample: SAMN05933600
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: naive CD8 T cells
strain: C57BL/6
age: six to seven weeks
tissue: Spleen
Original files (1)
naive CD8 T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR5305082 46262495 2313124750 991.89 SRR5305082, SRR5305082.sralite SRA
SRX2606521 SRP100941 ChIP-Seq SINGLE
GSM2357722: TN_H3K4me3_rep2; Mus musculus; ChIP-Seq
Sample: SRS1755808
BioProject: PRJNA376705
BioSample: SAMN05933599
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: naive CD8 T cells
strain: C57BL/6
age: six to seven weeks
tissue: Spleen
Original files (1)
naive CD8 T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR5305083 33572925 1678646250 719.44 SRR5305083.sralite, SRR5305083 SRA
SRX2606522 SRP100941 ChIP-Seq SINGLE
GSM2357723: TE_H3K4me3_rep1; Mus musculus; ChIP-Seq
Sample: SRS1755809
BioProject: PRJNA376705
BioSample: SAMN05933598
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: KLRG1hiIL7Rlo terminal effector CD8 T cells
strain: C57BL/6
age: six to seven weeks
tissue: Spleen
Original files (1)
KLRG1hiIL7Rlo terminal effector CD8 T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR5305084 15400892 770044600 430.46 SRR5305084, SRR5305084.sralite SRA
SRX2606523 SRP100941 ChIP-Seq SINGLE
GSM2357724: TE_H3K4me3_rep2; Mus musculus; ChIP-Seq
Sample: SRS1755810
BioProject: PRJNA376705
BioSample: SAMN05933597
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: KLRG1hiIL7Rlo terminal effector CD8 T cells
strain: C57BL/6
age: six to seven weeks
tissue: Spleen
Original files (1)
KLRG1hiIL7Rlo terminal effector CD8 T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR5305085 31691826 1584591300 686.9 SRR5305085, SRR5305085.sralite SRA
SRX2606524 SRP100941 ChIP-Seq SINGLE
GSM2357725: MP_H3K4me3_rep1; Mus musculus; ChIP-Seq
Sample: SRS1755811
BioProject: PRJNA376705
BioSample: SAMN05933596
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: KLRG1loIL7Rhi memory precursor CD8 T cells
strain: C57BL/6
age: six to seven weeks
tissue: Spleen
Original files (1)
KLRG1loIL7Rhi memory precursor CD8 T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR5305086 22514628 1125731400 615.83 SRR5305086, SRR5305086.sralite SRA
SRX2606525 SRP100941 ChIP-Seq SINGLE
GSM2357726: MP_H3K4me3_rep2; Mus musculus; ChIP-Seq
Sample: SRS1755812
BioProject: PRJNA376705
BioSample: SAMN05933595
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: KLRG1loIL7Rhi memory precursor CD8 T cells
strain: C57BL/6
age: six to seven weeks
tissue: Spleen
Original files (1)
KLRG1loIL7Rhi memory precursor CD8 T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR5305087 25224006 1261200300 540.4 SRR5305087, SRR5305087.sralite SRA
SRX2606526 SRP100941 ChIP-Seq SINGLE
GSM2357727: Memory_H3K4me3_rep1; Mus musculus; ChIP-Seq
Sample: SRS1755813
BioProject: PRJNA376705
BioSample: SAMN05933594
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: KLRG1loIL7Rhi memory CD8 T cells
strain: C57BL/6
age: six to seven weeks
tissue: Spleen
Original files (1)
KLRG1loIL7Rhi memory CD8 T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR5305088 25909358 1295467900 848.84 SRR5305088, SRR5305088.sralite SRA
SRX2606527 SRP100941 ChIP-Seq SINGLE
GSM2357728: Memory_H3K4me3_rep2; Mus musculus; ChIP-Seq
Sample: SRS1755814
BioProject: PRJNA376705
BioSample: SAMN05933573
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: KLRG1loIL7Rhi memory CD8 T cells
strain: C57BL/6
age: six to seven weeks
tissue: Spleen
Original files (1)
KLRG1loIL7Rhi memory CD8 T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR5305089 16435074 821753700 266.6 SRR5305089, SRR5305089.sralite SRA
SRX2606528 SRP100941 ChIP-Seq SINGLE
GSM2357729: TN_H3K4me1_rep1; Mus musculus; ChIP-Seq
Sample: SRS1755815
BioProject: PRJNA376705
BioSample: SAMN05933572
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: naive CD8 T cells
strain: C57BL/6
age: six to seven weeks
tissue: Spleen
Original files (1)
naive CD8 T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR5305090 28430510 1421525500 609.9 SRR5305090, SRR5305090.sralite SRA
SRX2606529 SRP100941 ChIP-Seq SINGLE
GSM2357730: TN_H3K4me1_rep2; Mus musculus; ChIP-Seq
Sample: SRS1755816
BioProject: PRJNA376705
BioSample: SAMN05933619
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: naive CD8 T cells
strain: C57BL/6
age: six to seven weeks
tissue: Spleen
Original files (1)
naive CD8 T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR5305091 27592193 1379609650 727.12 SRR5305091, SRR5305091.sralite SRA
SRX2606530 SRP100941 ChIP-Seq SINGLE
GSM2357731: TE_H3K4me1_rep1; Mus musculus; ChIP-Seq
Sample: SRS1755818
BioProject: PRJNA376705
BioSample: SAMN05933618
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: KLRG1hiIL7Rlo terminal effector CD8 T cells
strain: C57BL/6
age: six to seven weeks
tissue: Spleen
Original files (1)
KLRG1hiIL7Rlo terminal effector CD8 T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR5305092 33526334 1676316700 921.58 SRR5305092, SRR5305092.sralite SRA
SRX2606531 SRP100941 ChIP-Seq SINGLE
GSM2357732: TE_H3K4me1_rep2; Mus musculus; ChIP-Seq
Sample: SRS1755817
BioProject: PRJNA376705
BioSample: SAMN05933617
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: KLRG1hiIL7Rlo terminal effector CD8 T cells
strain: C57BL/6
age: six to seven weeks
tissue: Spleen
Original files (1)
KLRG1hiIL7Rlo terminal effector CD8 T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR5305093 30871872 1543593600 1040.42 SRR5305093, SRR5305093.sralite SRA
SRX2606532 SRP100941 ChIP-Seq SINGLE
GSM2357733: MP_H3K4me1_rep1; Mus musculus; ChIP-Seq
Sample: SRS1755820
BioProject: PRJNA376705
BioSample: SAMN05933616
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: KLRG1loIL7Rhi memory precursor CD8 T cells
strain: C57BL/6
age: six to seven weeks
tissue: Spleen
Original files (1)
KLRG1loIL7Rhi memory precursor CD8 T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR5305094 25989205 1299460250 891.58 SRR5305094, SRR5305094.sralite SRA
SRX2606533 SRP100941 ChIP-Seq SINGLE
GSM2357734: MP_H3K4me1_rep2; Mus musculus; ChIP-Seq
Sample: SRS1755819
BioProject: PRJNA376705
BioSample: SAMN05933615
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: KLRG1loIL7Rhi memory precursor CD8 T cells
strain: C57BL/6
age: six to seven weeks
tissue: Spleen
Original files (1)
KLRG1loIL7Rhi memory precursor CD8 T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR5305095 40052229 2002611450 861.74 SRR5305095, SRR5305095.sralite SRA
SRX2606534 SRP100941 ChIP-Seq SINGLE
GSM2357735: Memory_H3K4me1_rep1; Mus musculus; ChIP-Seq
Sample: SRS1755821
BioProject: PRJNA376705
BioSample: SAMN05933614
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: KLRG1loIL7Rhi memory CD8 T cells
strain: C57BL/6
age: six to seven weeks
tissue: Spleen
Original files (1)
KLRG1loIL7Rhi memory CD8 T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR5305096 34807959 1740397950 1116.17 SRR5305096, SRR5305096.sralite SRA
SRX2606535 SRP100941 ChIP-Seq SINGLE
GSM2357736: Memory_H3K4me1_rep2; Mus musculus; ChIP-Seq
Sample: SRS1755822
BioProject: PRJNA376705
BioSample: SAMN05933613
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: KLRG1loIL7Rhi memory CD8 T cells
strain: C57BL/6
age: six to seven weeks
tissue: Spleen
Original files (1)
KLRG1loIL7Rhi memory CD8 T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR5305097 21119917 1055995850 343.62 SRR5305097, SRR5305097.sralite SRA
SRX2606536 SRP100941 ChIP-Seq SINGLE
GSM2357745: TN_H3K27ac_rep1; Mus musculus; ChIP-Seq
Sample: SRS1755833
BioProject: PRJNA376705
BioSample: SAMN05933589
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: naive CD8 T cells
strain: C57BL/6
age: six to seven weeks
tissue: Spleen
Original files (1)
naive CD8 T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR5305098 26883088 1344154400 730.01 SRR5305098, SRR5305098.sralite SRA
SRX2606537 SRP100941 ChIP-Seq SINGLE
GSM2357746: TN_H3K27ac_rep2; Mus musculus; ChIP-Seq
Sample: SRS1755831
BioProject: PRJNA376705
BioSample: SAMN05933588
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: naive CD8 T cells
strain: C57BL/6
age: six to seven weeks
tissue: Spleen
Original files (1)
naive CD8 T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR5305099 16039187 801959350 432.8 SRR5305099.sralite, SRR5305099 SRA
SRX2606538 SRP100941 ChIP-Seq SINGLE
GSM2357747: TE_H3K27ac_rep1; Mus musculus; ChIP-Seq
Sample: SRS1755832
BioProject: PRJNA376705
BioSample: SAMN05933587
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: KLRG1hiIL7Rlo terminal effector CD8 T cells
strain: C57BL/6
age: six to seven weeks
tissue: Spleen
Original files (1)
KLRG1hiIL7Rlo terminal effector CD8 T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR5305100 20159315 1007965750 669.78 SRR5305100.sralite SRA
SRX2606539 SRP100941 ChIP-Seq SINGLE
GSM2357748: TE_H3K27ac_rep2; Mus musculus; ChIP-Seq
Sample: SRS1755834
BioProject: PRJNA376705
BioSample: SAMN05933586
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: KLRG1hiIL7Rlo terminal effector CD8 T cells
strain: C57BL/6
age: six to seven weeks
tissue: Spleen
Original files (1)
KLRG1hiIL7Rlo terminal effector CD8 T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR5305101 15236332 761816600 323.95 SRR5305101, SRR5305101.sralite SRA
SRX2606540 SRP100941 ChIP-Seq SINGLE
GSM2357749: MP_H3K27ac_rep1; Mus musculus; ChIP-Seq
Sample: SRS1755835
BioProject: PRJNA376705
BioSample: SAMN05933585
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: KLRG1loIL7Rhi memory precursor CD8 T cells
strain: C57BL/6
age: six to seven weeks
tissue: Spleen
Original files (1)
KLRG1loIL7Rhi memory precursor CD8 T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR5305102 26129267 1306463350 708.3 SRR5305102, SRR5305102.sralite SRA
SRX2606541 SRP100941 ChIP-Seq SINGLE
GSM2357750: MP_H3K27ac_rep2; Mus musculus; ChIP-Seq
Sample: SRS1755836
BioProject: PRJNA376705
BioSample: SAMN05933584
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: KLRG1loIL7Rhi memory precursor CD8 T cells
strain: C57BL/6
age: six to seven weeks
tissue: Spleen
Original files (1)
KLRG1loIL7Rhi memory precursor CD8 T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR5305103 20831757 1041587850 691.19 SRR5305103, SRR5305103.sralite SRA
SRX2606542 SRP100941 ChIP-Seq SINGLE
GSM2357751: Memory_H3K27ac_rep1; Mus musculus; ChIP-Seq
Sample: SRS1755838
BioProject: PRJNA376705
BioSample: SAMN05933583
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: KLRG1loIL7Rhi memory CD8 T cells
strain: C57BL/6
age: six to seven weeks
tissue: Spleen
Original files (1)
KLRG1loIL7Rhi memory CD8 T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR5305104 29446953 1472347650 969.68 SRR5305104, SRR5305104.sralite SRA
SRX2606543 SRP100941 ChIP-Seq SINGLE
GSM2357752: Memory_H3K27ac_rep2; Mus musculus; ChIP-Seq
Sample: SRS1755837
BioProject: PRJNA376705
BioSample: SAMN05933582
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: KLRG1loIL7Rhi memory CD8 T cells
strain: C57BL/6
age: six to seven weeks
tissue: Spleen
Original files (1)
KLRG1loIL7Rhi memory CD8 T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR5305105 20144233 1007211650 326.1 SRR5305105.sralite, SRR5305105 SRA
SRX2606544 SRP100941 ChIP-Seq SINGLE
GSM2357753: TN_Input_rep1; Mus musculus; ChIP-Seq
Sample: SRS1755839
BioProject: PRJNA376705
BioSample: SAMN05933581
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: naive CD8 T cells
strain: C57BL/6
age: six to seven weeks
tissue: Spleen
Original files (1)
naive CD8 T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR5305106 12401697 620084850 355.16 SRR5305106, SRR5305106.sralite SRA
SRX2606545 SRP100941 ChIP-Seq SINGLE
GSM2357754: TN_Input_rep2; Mus musculus; ChIP-Seq
Sample: SRS1755840
BioProject: PRJNA376705
BioSample: SAMN05933580
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: naive CD8 T cells
strain: C57BL/6
age: six to seven weeks
tissue: Spleen
Original files (1)
naive CD8 T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR5305107 10478129 523906450 319.78 SRR5305107, SRR5305107.sralite SRA
SRX2606546 SRP100941 ChIP-Seq SINGLE
GSM2357755: TE_Input_rep1; Mus musculus; ChIP-Seq
Sample: SRS1755841
BioProject: PRJNA376705
BioSample: SAMN05933579
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: KLRG1hiIL7Rlo terminal effector CD8 T cells
strain: C57BL/6
age: six to seven weeks
tissue: Spleen
Original files (1)
KLRG1hiIL7Rlo terminal effector CD8 T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR5305108 42172067 2108603350 1151.65 SRR5305108.sralite, SRR5305108 SRA
SRX2606547 SRP100941 ChIP-Seq SINGLE
GSM2357756: TE_Input_rep2; Mus musculus; ChIP-Seq
Sample: SRS1755842
BioProject: PRJNA376705
BioSample: SAMN05933578
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: KLRG1hiIL7Rlo terminal effector CD8 T cells
strain: C57BL/6
age: six to seven weeks
tissue: Spleen
Original files (1)
KLRG1hiIL7Rlo terminal effector CD8 T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR5305109 11279019 563950950 346.44 SRR5305109, SRR5305109.sralite SRA
SRX2606548 SRP100941 ChIP-Seq SINGLE
GSM2357757: MP_Input_rep1; Mus musculus; ChIP-Seq
Sample: SRS1755844
BioProject: PRJNA376705
BioSample: SAMN05933577
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: KLRG1loIL7Rhi memory precursor CD8 T cells
strain: C57BL/6
age: six to seven weeks
tissue: Spleen
Original files (1)
KLRG1loIL7Rhi memory precursor CD8 T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR5305110 12394792 619739600 355.28 SRR5305110.sralite, SRR5305110 SRA
SRX2606549 SRP100941 ChIP-Seq SINGLE
GSM2357758: MP_Input_rep2; Mus musculus; ChIP-Seq
Sample: SRS1755843
BioProject: PRJNA376705
BioSample: SAMN05933576
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: KLRG1loIL7Rhi memory precursor CD8 T cells
strain: C57BL/6
age: six to seven weeks
tissue: Spleen
Original files (1)
KLRG1loIL7Rhi memory precursor CD8 T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR5305111 21921114 1096055700 753.36 SRR5305111, SRR5305111.sralite SRA
SRX2606550 SRP100941 ChIP-Seq SINGLE
GSM2357759: Memory_Input_rep1; Mus musculus; ChIP-Seq
Sample: SRS1755845
BioProject: PRJNA376705
BioSample: SAMN05933575
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: KLRG1loIL7Rhi memory CD8 T cells
strain: C57BL/6
age: six to seven weeks
tissue: Spleen
Original files (1)
KLRG1loIL7Rhi memory CD8 T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR5305112 18321954 916097700 644.11 SRR5305112.sralite, SRR5305112 SRA
SRX2606551 SRP100941 ChIP-Seq SINGLE
GSM2357760: Memory_Input_rep2; Mus musculus; ChIP-Seq
Sample: SRS1755846
BioProject: PRJNA376705
BioSample: SAMN05933574
Platform: ILLUMINA
Instrument: Illumina HiSeq 2500
Organism: Mus musculus
Sample attributes
source_name: KLRG1loIL7Rhi memory CD8 T cells
strain: C57BL/6
age: six to seven weeks
tissue: Spleen
Original files (1)
KLRG1loIL7Rhi memory CD8 T cells
Runs (1)
Run Spots Bases Size (MB) Files Link
SRR5305113 22357439 1117871950 361.42 SRR5305113.sralite, SRR5305113 SRA

Linked Publications (2)

The long noncoding RNA Malat1 regulates CD8+ T cell differentiation by mediating epigenetic repression.
The Journal of experimental medicine · 2022
Early transcriptional and epigenetic regulation of CD8<sup>+</sup> T cell differentiation revealed by single-cell RNA sequencing.
Nature immunology · 2017

Data Files (40)

Accession File Name Stored Type Output Type Mapping Assembly Size Download
— SRR5305082 ChIP-Seq 991.9 MB link
— SRR5305083.sralite ChIP-Seq 719.4 MB link
— SRR5305084 ChIP-Seq 430.5 MB link
— SRR5305085 ChIP-Seq 686.9 MB link
— SRR5305086 ChIP-Seq 615.8 MB link
— SRR5305087 ChIP-Seq 540.4 MB link
— SRR5305088 ChIP-Seq 848.8 MB link
— SRR5305089 ChIP-Seq 266.6 MB link
— SRR5305090 ChIP-Seq 609.9 MB link
— SRR5305091 ChIP-Seq 727.1 MB link
— SRR5305092 ChIP-Seq 921.6 MB link
— SRR5305093 ChIP-Seq 1.0 GB link
— SRR5305094 ChIP-Seq 891.6 MB link
— SRR5305095 ChIP-Seq 861.7 MB link
— SRR5305096 ChIP-Seq 1.1 GB link
— SRR5305097 ChIP-Seq 343.6 MB link
— SRR5305098 ChIP-Seq 730.0 MB link
— SRR5305099.sralite ChIP-Seq 432.8 MB link
— SRR5305100.sralite ChIP-Seq 669.8 MB link
— SRR5305101 ChIP-Seq 323.9 MB link
— SRR5305102 ChIP-Seq 708.3 MB link
— SRR5305103 ChIP-Seq 691.2 MB link
— SRR5305104 ChIP-Seq 969.7 MB link
— SRR5305105.sralite ChIP-Seq 326.1 MB link
— SRR5305106 ChIP-Seq 355.2 MB link
— SRR5305107 ChIP-Seq 319.8 MB link
— SRR5305108.sralite ChIP-Seq 1.1 GB link
— SRR5305109 ChIP-Seq 346.4 MB link
— SRR5305110.sralite ChIP-Seq 355.3 MB link
— SRR5305111 ChIP-Seq 753.4 MB link
— SRR5305112.sralite ChIP-Seq 644.1 MB link
— SRR5305113.sralite ChIP-Seq 361.4 MB link
— SRR5305074 OTHER 882.3 MB link
— SRR5305075 OTHER 678.1 MB link
— SRR5305076 OTHER 733.3 MB link
— SRR5305077 OTHER 649.2 MB link
— SRR5305078 OTHER 684.1 MB link
— SRR5305079.sralite OTHER 622.3 MB link
— SRR5305080 OTHER 381.4 MB link
— SRR5305081 OTHER 1.0 GB link