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ENCSR820DQJ

ENCSR ENCODE
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eCLIP experiment on HepG2 against NOL12

Organism: Homo sapiens
Experiment Types:
eCLIP
Status: released
Contact: Gene Yeo, UCSD

Relations

control:ENCSR709ABG

Summary

eCLIP of NOL12 in Homo sapiens HepG2

Analysis

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Analysis page is available for ENCSR820DQJ.

ENCODE Metadata

Total file size: 3.0 GB
Assay: eCLIP
Target: NOL12
Biosample: Homo sapiens HepG2
Files: 36
Unique ENC file IDs: 36
File Formats
bed (10) bigBed (10) bigWig (8) bam (4) fastq (4)
Output types (5)
peaks (20) alignments (4) minus strand signal of unique reads (4) plus strand signal of unique reads (4) reads (4)

Linked Publications (3)

Nol12 is a multifunctional RNA binding protein at the nexus of RNA and DNA metabolism.
Nucleic acids research · 2017
Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins.
Genome biology · 2020
A large-scale binding and functional map of human RNA-binding proteins.
Nature · 2020

Data Files (36)

Accession File Name Stored Type Output Type Mapping Assembly Size Download
ENCFF134IIH ENCFF134IIH.bam bam (alignments); assembly: GRCh38 alignments GRCh38 99.6 MB link
ENCFF722JFH ENCFF722JFH.bam bam (alignments); assembly: GRCh38 alignments GRCh38 186.9 MB link
ENCFF160ZHG ENCFF160ZHG.bam bam (alignments); assembly: hg19 alignments hg19 105.7 MB link
ENCFF821NNN ENCFF821NNN.bam bam (alignments); assembly: hg19 alignments hg19 193.6 MB link
ENCFF078UAE ENCFF078UAE.bed bed (peaks); assembly: GRCh38 peaks GRCh38 147.3 KB link
ENCFF087FYK ENCFF087FYK.bed bed (peaks); assembly: GRCh38 peaks GRCh38 890.7 KB link
ENCFF506LVL ENCFF506LVL.bed bed (peaks); assembly: GRCh38 peaks GRCh38 517.4 KB link
ENCFF746WOI ENCFF746WOI.bed bed (peaks); assembly: GRCh38 peaks GRCh38 161.4 KB link
ENCFF914WFQ ENCFF914WFQ.bed bed (peaks); assembly: GRCh38 peaks GRCh38 7.0 KB link
ENCFF047PZR ENCFF047PZR.bed bed (peaks); assembly: hg19 peaks hg19 7.2 KB link
ENCFF306ZNQ ENCFF306ZNQ.bed bed (peaks); assembly: hg19 peaks hg19 437.9 KB link
ENCFF515WRY ENCFF515WRY.bed bed (peaks); assembly: hg19 peaks hg19 540.5 KB link
ENCFF716SCR ENCFF716SCR.bed bed (peaks); assembly: hg19 peaks hg19 916.3 KB link
ENCFF920OZH ENCFF920OZH.bed bed (peaks); assembly: hg19 peaks hg19 527.3 KB link
ENCFF107XVX ENCFF107XVX.bigBed bigBed (peaks); assembly: GRCh38 peaks GRCh38 420.5 KB link
ENCFF429WKY ENCFF429WKY.bigBed bigBed (peaks); assembly: GRCh38 peaks GRCh38 391.7 KB link
ENCFF589NWW ENCFF589NWW.bigBed bigBed (peaks); assembly: GRCh38 peaks GRCh38 974.8 KB link
ENCFF817NNY ENCFF817NNY.bigBed bigBed (peaks); assembly: GRCh38 peaks GRCh38 1.6 MB link
ENCFF378YBS ENCFF378YBS.bigBed bigBed (peaks); assembly: hg19 peaks hg19 1.6 MB link
ENCFF694CAN ENCFF694CAN.bigBed bigBed (peaks); assembly: hg19 peaks hg19 1021.5 KB link
ENCFF808JBC ENCFF808JBC.bigBed bigBed (peaks); assembly: hg19 peaks hg19 861.1 KB link
ENCFF814JGB ENCFF814JGB.bigBed bigBed (peaks); assembly: hg19 peaks hg19 1018.8 KB link
ENCFF833LUK ENCFF833LUK.bigBed bigBed (peaks); assembly: hg19 peaks hg19 2.0 MB link
ENCFF957MPZ ENCFF957MPZ.bigBed bigBed (peaks); assembly: hg19 peaks hg19 1.6 MB link
ENCFF325BSW ENCFF325BSW.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 minus strand signal of unique reads GRCh38 4.9 MB link
ENCFF900ABY ENCFF900ABY.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 minus strand signal of unique reads GRCh38 8.5 MB link
ENCFF009PAA ENCFF009PAA.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 minus strand signal of unique reads hg19 5.1 MB link
ENCFF927YPS ENCFF927YPS.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 minus strand signal of unique reads hg19 11.5 MB link
ENCFF038OXX ENCFF038OXX.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 plus strand signal of unique reads GRCh38 5.0 MB link
ENCFF333DNO ENCFF333DNO.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 plus strand signal of unique reads GRCh38 8.7 MB link
ENCFF532KFY ENCFF532KFY.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 plus strand signal of unique reads hg19 5.3 MB link
ENCFF585HPQ ENCFF585HPQ.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 plus strand signal of unique reads hg19 8.9 MB link
ENCFF241ABH ENCFF241ABH.fastq fastq (reads) reads 593.3 MB link
ENCFF483TJU ENCFF483TJU.fastq fastq (reads) reads 565.9 MB link
ENCFF765OCP ENCFF765OCP.fastq fastq (reads) reads 610.4 MB link
ENCFF906PLZ ENCFF906PLZ.fastq fastq (reads) reads 637.0 MB link