← All datasets

ENCSR038JME

ENCSR ENCODE
Export SRA CSV View on ENCODE

eCLIP experiment on K562 against WRN

Organism: Homo sapiens
Experiment Types:
eCLIP
Status: released
Contact: Gene Yeo, UCSD

Relations

control:ENCSR925ZRV

Summary

eCLIP of WRN in Homo sapiens K562

Overall Design

eCLIP experiment on K562 against WRN

Analysis

View Data Processing
Analysis page is available for ENCSR038JME.

Dataset Citations (2)

Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins.
PMID 32252787 · 2020 · Genome biology
Eric L Van Nostrand, Gabriel A Pratt, Brian A Yee, Emily C Wheeler, Steven M Blue, Jasmine Mueller, Samuel S Park, Keri E Garcia, Chelsea Gelboin-Burkhart, Thai B Nguyen, Ines Rabano, Rebecca Stanton, Balaji Sundararaman, Ruth Wang, Xiang-Dong Fu, Brenton R Graveley, Gene W Yeo
A large-scale binding and functional map of human RNA-binding proteins.
PMID 32728246 · 2020 · Nature
Eric L Van Nostrand, Peter Freese, Gabriel A Pratt, Xiaofeng Wang, Xintao Wei, Rui Xiao, Steven M Blue, Jia-Yu Chen, Neal A L Cody, Daniel Dominguez, Sara Olson, Balaji Sundararaman, Lijun Zhan, Cassandra Bazile, Louis Philip Benoit Bouvrette, Julie Bergalet, Michael O Duff, Keri E Garcia, Chelsea Gelboin-Burkhart, Myles Hochman, Nicole J Lambert, Hairi Li, Michael P McGurk, Thai B Nguyen, Tsultrim Palden, Ines Rabano, Shashank Sathe, Rebecca Stanton, Amanda Su, Ruth Wang, Brian A Yee, Bing Zhou, Ashley L Louie, Stefan Aigner, Xiang-Dong Fu, Eric Lécuyer, Christopher B Burge, Brenton R Graveley, Gene W Yeo

ENCODE Metadata

Total file size: 1.7 GB
Assay: eCLIP
Target: WRN
Biosample: Homo sapiens K562
Files: 26
Unique ENC file IDs: 26
File Formats
bigWig (8) bed (6) bam (4) bigBed (4) fastq (4)
Output types (5)
peaks (10) alignments (4) minus strand signal of unique reads (4) plus strand signal of unique reads (4) reads (4)

Linked Publications (2)

Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins.
Genome biology · 2020
A large-scale binding and functional map of human RNA-binding proteins.
Nature · 2020

Data Files (26)

Accession File Name Stored Type Output Type Mapping Assembly Size Download
ENCFF526BOW ENCFF526BOW.bam bam (alignments); assembly: GRCh38 alignments GRCh38 106.3 MB link
ENCFF945HNC ENCFF945HNC.bam bam (alignments); assembly: GRCh38 alignments GRCh38 79.0 MB link
ENCFF264AQP ENCFF264AQP.bam bam (alignments); assembly: hg19 alignments hg19 108.3 MB link
ENCFF480XQJ ENCFF480XQJ.bam bam (alignments); assembly: hg19 alignments hg19 80.2 MB link
ENCFF289NNH ENCFF289NNH.bed bed (peaks); assembly: GRCh38 peaks GRCh38 607.6 KB link
ENCFF404HHM ENCFF404HHM.bed bed (peaks); assembly: GRCh38 peaks GRCh38 3.0 KB link
ENCFF556SMF ENCFF556SMF.bed bed (peaks); assembly: GRCh38 peaks GRCh38 566.1 KB link
ENCFF109LYL ENCFF109LYL.bed bed (peaks); assembly: hg19 peaks hg19 605.4 KB link
ENCFF138IUK ENCFF138IUK.bed bed (peaks); assembly: hg19 peaks hg19 569.1 KB link
ENCFF938JQE ENCFF938JQE.bed bed (peaks); assembly: hg19 peaks hg19 3.2 KB link
ENCFF128BXK ENCFF128BXK.bigBed bigBed (peaks); assembly: GRCh38 peaks GRCh38 1.1 MB link
ENCFF269MTH ENCFF269MTH.bigBed bigBed (peaks); assembly: GRCh38 peaks GRCh38 1.2 MB link
ENCFF254ATY ENCFF254ATY.bigBed bigBed (peaks); assembly: hg19 peaks hg19 1.1 MB link
ENCFF351RZD ENCFF351RZD.bigBed bigBed (peaks); assembly: hg19 peaks hg19 1.2 MB link
ENCFF318MEI ENCFF318MEI.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 minus strand signal of unique reads GRCh38 5.6 MB link
ENCFF494TID ENCFF494TID.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 minus strand signal of unique reads GRCh38 4.7 MB link
ENCFF208NTO ENCFF208NTO.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 minus strand signal of unique reads hg19 4.8 MB link
ENCFF901PRL ENCFF901PRL.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 minus strand signal of unique reads hg19 5.6 MB link
ENCFF379ORN ENCFF379ORN.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 plus strand signal of unique reads GRCh38 5.9 MB link
ENCFF632GZB ENCFF632GZB.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 plus strand signal of unique reads GRCh38 5.0 MB link
ENCFF773BDV ENCFF773BDV.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 plus strand signal of unique reads hg19 5.9 MB link
ENCFF838CRT ENCFF838CRT.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 plus strand signal of unique reads hg19 5.0 MB link
ENCFF137XEJ ENCFF137XEJ.fastq fastq (reads) reads 362.9 MB link
ENCFF548GPO ENCFF548GPO.fastq fastq (reads) reads 301.4 MB link
ENCFF553UKA ENCFF553UKA.fastq fastq (reads) reads 378.1 MB link
ENCFF673VLP ENCFF673VLP.fastq fastq (reads) reads 317.5 MB link