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ENCSR145NLR

ENCSR ENCODE
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eCLIP experiment on K562 against DDX51

Organism: Homo sapiens
Experiment Types:
eCLIP
Status: released
Contact: Gene Yeo, UCSD

Relations

control:ENCSR268SKI

Summary

eCLIP of DDX51 in Homo sapiens K562

Overall Design

eCLIP experiment on K562 against DDX51

Analysis

View Data Processing
Analysis page is available for ENCSR145NLR.

Dataset Citations (2)

Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins.
PMID 32252787 · 2020 · Genome biology
Eric L Van Nostrand, Gabriel A Pratt, Brian A Yee, Emily C Wheeler, Steven M Blue, Jasmine Mueller, Samuel S Park, Keri E Garcia, Chelsea Gelboin-Burkhart, Thai B Nguyen, Ines Rabano, Rebecca Stanton, Balaji Sundararaman, Ruth Wang, Xiang-Dong Fu, Brenton R Graveley, Gene W Yeo
A large-scale binding and functional map of human RNA-binding proteins.
PMID 32728246 · 2020 · Nature
Eric L Van Nostrand, Peter Freese, Gabriel A Pratt, Xiaofeng Wang, Xintao Wei, Rui Xiao, Steven M Blue, Jia-Yu Chen, Neal A L Cody, Daniel Dominguez, Sara Olson, Balaji Sundararaman, Lijun Zhan, Cassandra Bazile, Louis Philip Benoit Bouvrette, Julie Bergalet, Michael O Duff, Keri E Garcia, Chelsea Gelboin-Burkhart, Myles Hochman, Nicole J Lambert, Hairi Li, Michael P McGurk, Thai B Nguyen, Tsultrim Palden, Ines Rabano, Shashank Sathe, Rebecca Stanton, Amanda Su, Ruth Wang, Brian A Yee, Bing Zhou, Ashley L Louie, Stefan Aigner, Xiang-Dong Fu, Eric Lécuyer, Christopher B Burge, Brenton R Graveley, Gene W Yeo

ENCODE Metadata

Total file size: 2.7 GB
Assay: eCLIP
Target: DDX51
Biosample: Homo sapiens K562
Files: 26
Unique ENC file IDs: 26
File Formats
bigWig (8) bed (6) bam (4) bigBed (4) fastq (4)
Output types (5)
peaks (10) alignments (4) minus strand signal of unique reads (4) plus strand signal of unique reads (4) reads (4)

Linked Publications (2)

Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins.
Genome biology · 2020
A large-scale binding and functional map of human RNA-binding proteins.
Nature · 2020

Data Files (26)

Accession File Name Stored Type Output Type Mapping Assembly Size Download
ENCFF486XDM ENCFF486XDM.bam bam (alignments); assembly: GRCh38 alignments GRCh38 104.7 MB link
ENCFF931ZGZ ENCFF931ZGZ.bam bam (alignments); assembly: GRCh38 alignments GRCh38 135.7 MB link
ENCFF536UEG ENCFF536UEG.bam bam (alignments); assembly: hg19 alignments hg19 139.3 MB link
ENCFF924PFV ENCFF924PFV.bam bam (alignments); assembly: hg19 alignments hg19 111.3 MB link
ENCFF584CZB ENCFF584CZB.bed bed (peaks); assembly: GRCh38 peaks GRCh38 555.7 KB link
ENCFF799ERK ENCFF799ERK.bed bed (peaks); assembly: GRCh38 peaks GRCh38 10.3 KB link
ENCFF965UZI ENCFF965UZI.bed bed (peaks); assembly: GRCh38 peaks GRCh38 684.7 KB link
ENCFF042FAB ENCFF042FAB.bed bed (peaks); assembly: hg19 peaks hg19 586.9 KB link
ENCFF146YPF ENCFF146YPF.bed bed (peaks); assembly: hg19 peaks hg19 10.9 KB link
ENCFF475ZZT ENCFF475ZZT.bed bed (peaks); assembly: hg19 peaks hg19 697.6 KB link
ENCFF323COR ENCFF323COR.bigBed bigBed (peaks); assembly: GRCh38 peaks GRCh38 1.0 MB link
ENCFF827UJU ENCFF827UJU.bigBed bigBed (peaks); assembly: GRCh38 peaks GRCh38 1.2 MB link
ENCFF420FBX ENCFF420FBX.bigBed bigBed (peaks); assembly: hg19 peaks hg19 1.1 MB link
ENCFF998TMB ENCFF998TMB.bigBed bigBed (peaks); assembly: hg19 peaks hg19 1.3 MB link
ENCFF072MQR ENCFF072MQR.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 minus strand signal of unique reads GRCh38 5.2 MB link
ENCFF582OJZ ENCFF582OJZ.bigWig bigWig (minus strand signal of unique reads); assembly: GRCh38 minus strand signal of unique reads GRCh38 6.4 MB link
ENCFF563HWS ENCFF563HWS.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 minus strand signal of unique reads hg19 5.4 MB link
ENCFF633XON ENCFF633XON.bigWig bigWig (minus strand signal of unique reads); assembly: hg19 minus strand signal of unique reads hg19 6.5 MB link
ENCFF230UVW ENCFF230UVW.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 plus strand signal of unique reads GRCh38 6.8 MB link
ENCFF286QNA ENCFF286QNA.bigWig bigWig (plus strand signal of unique reads); assembly: GRCh38 plus strand signal of unique reads GRCh38 5.5 MB link
ENCFF100CNX ENCFF100CNX.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 plus strand signal of unique reads hg19 6.9 MB link
ENCFF421HDU ENCFF421HDU.bigWig bigWig (plus strand signal of unique reads); assembly: hg19 plus strand signal of unique reads hg19 5.8 MB link
ENCFF143MWR ENCFF143MWR.fastq fastq (reads) reads 526.6 MB link
ENCFF258EAW ENCFF258EAW.fastq fastq (reads) reads 626.8 MB link
ENCFF402STK ENCFF402STK.fastq fastq (reads) reads 578.5 MB link
ENCFF447BHR ENCFF447BHR.fastq fastq (reads) reads 492.7 MB link